Citrus Sinensis ID: 038698

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MGKHNSSGSRTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADCNIFTDLSFETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPEDEKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccEEccccccccccccccccccccccccccccccccccccccccccHHHHHHcccEEEEEccEEEEccccccccccHHHHHHHHHHHcccccccEEEEEEcccccccHHHEEccccEEEEEcccccccHHHHHHHHHccccccEEcccccccccccccccHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccccccccccccccHHccccccccccccccccccccccccHccccccccHHHHHcccHHHHHHHHHccccccccccccccccccccccccccccccHEHHcccccHHHEEEEccccEEEEcccEEEcccccccccccHHHHHHHHHHHcccccccEEEEEEccccHccHHHHHHcccEEEEEcccccHHHHHHHHHHHccccEEEEEHcccccccccccEcEHHHcccccccccc
Coil and Loop (DISEMBL)
mgkhnssgsrtrspLSILIVIVLCGFFYMLGawqksgfgkgdtIASQITKQadcniftdlsfethhndveivepsepkakvfkpcdvkysdytpcqeqdramkfprenmtyrerhcppedeklhclipapkgymtpfpwpkgrdyvhyanvphksLTVEKAVQNWVQFQgnvfkfpgggtmfpqgaDAYIDELASvipikdgsvrtaldtgcgvASWGAYLLKRNvltmsfaprdnhEAQVQFALERGVPAVIGVLgtihlpypsrafdmaqcsrclipwtsn
Flexible Loop (DISEMBL)
mgkhnssgsrtrsplSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADCNIFTDLSFETHHNDveivepsepkakvfkpcdvkysdytpcqeqdramkfpreNMTYRERHCPPEDEKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN
Low Complexity Region (SEG)
MGKHNSSGSRTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADCNIFTDLSFETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPEDEKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN
Disordered region (IsUnstruct)
**************LSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADCNIFTDLSFETHHNDVEIVE*****AKVFKPCDVKYSDYTP***************************KLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPW***
Disordered Region (DISOPRED)
****************ILIVIVLCGFFYMLGAWQKS*********************************************FKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPEDEKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPW***
Disordered Region (DISEMBL)
***********RSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADCNIFTDLSFETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPEDEKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN
Disordered Region (DISPRO)
***********RSPLSILIVIVLCGFFYMLGAWQKS******************************************AKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPEDEKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWT**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKHNSSGSRTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADCNIFTDLSFETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPEDEKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	283	2.2.26 [Sep-21-2011]
Q94EJ6	621	Probable methyltransferas	yes	no	0.992	0.452	0.823	1e-139
B9DFI7	616	Probable methyltransferas	no	no	0.992	0.456	0.718	1e-123
Q9SZX8	633	Probable methyltransferas	no	no	0.968	0.432	0.540	4e-92
Q9C884	639	Probable methyltransferas	no	no	0.978	0.433	0.501	5e-89
O80844	631	Probable methyltransferas	no	no	0.971	0.435	0.542	1e-86
Q9ZPH9	633	Probable methyltransferas	no	no	0.929	0.415	0.549	6e-86
Q94II3	600	Probable methyltransferas	no	no	0.929	0.438	0.453	1e-69
Q9C6S7	603	Probable methyltransferas	no	no	0.954	0.447	0.462	4e-68
Q9ZW75	611	Probable methyltransferas	no	no	0.710	0.328	0.564	9e-65
Q940J9	623	Probable methyltransferas	no	no	0.989	0.449	0.415	3e-58

>sp|Q94EJ6|PMTE_ARATH Probable methyltransferase PMT14 OS=Arabidopsis thaliana GN=At4g18030 PE=1 SV=1

 Score =  494 bits (1273), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 233/283 (82%), Positives = 254/283 (89%), Gaps = 2/283 (0%)

Query: 3   KHNSSGS-RTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADC-NIFTDL 60
           KHN  G+ R+RS LS+L+V+ LC FFY+LGAWQKSGFGKGD+IA +ITKQA C +I TDL
Sbjct: 4   KHNPPGNNRSRSTLSLLVVVGLCCFFYLLGAWQKSGFGKGDSIAMEITKQAQCTDIVTDL 63

Query: 61  SFETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPED 120
            FE HHN V+I   ++PK   FKPCDVK  DYTPCQEQDRAMKFPRENM YRERHCPP++
Sbjct: 64  DFEPHHNTVKIPHKADPKPVSFKPCDVKLKDYTPCQEQDRAMKFPRENMIYRERHCPPDN 123

Query: 121 EKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGT 180
           EKL CL+PAPKGYMTPFPWPK RDYVHYAN P KSLTVEKA QNWVQFQGNVFKFPGGGT
Sbjct: 124 EKLRCLVPAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKAGQNWVQFQGNVFKFPGGGT 183

Query: 181 MFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQ 240
           MFPQGADAYI+ELASVIPIKDGSVRTALDTGCGVASWGAY+LKRNVLTMSFAPRDNHEAQ
Sbjct: 184 MFPQGADAYIEELASVIPIKDGSVRTALDTGCGVASWGAYMLKRNVLTMSFAPRDNHEAQ 243

Query: 241 VQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN 283
           VQFALERGVPA+I VLG+I LPYP+RAFDMAQCSRCLIPWT+N
Sbjct: 244 VQFALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWTAN 286

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|B9DFI7|PMT2_ARATH Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2

 Score =  440 bits (1131), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 204/284 (71%), Positives = 240/284 (84%), Gaps = 3/284 (1%)

Query: 3   KHNSSGSRTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQ-ADCNIFTDLS 61
           K +S+  +TRS + I IV  LC FFY+LGAWQ+SGFGKGD+IA ++T   ADCNI   L+
Sbjct: 4   KSSSADGKTRSSVQIFIVFSLCCFFYILGAWQRSGFGKGDSIALEMTNSGADCNIVPSLN 63

Query: 62  FETHH-NDVEIVEPSEP-KAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPE 119
           FETHH  +  +V  SE  K K F+PCD +Y+DYTPCQ+Q RAM FPR++M YRERHC PE
Sbjct: 64  FETHHAGESSLVGASEAAKVKAFEPCDGRYTDYTPCQDQRRAMTFPRDSMIYRERHCAPE 123

Query: 120 DEKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGG 179
           +EKLHCLIPAPKGY+TPF WPK RDYV YAN P+K+LTVEKA+QNW+Q++G+VF+FPGGG
Sbjct: 124 NEKLHCLIPAPKGYVTPFSWPKSRDYVPYANAPYKALTVEKAIQNWIQYEGDVFRFPGGG 183

Query: 180 TMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEA 239
           T FPQGAD YID+LASVIP+++G+VRTALDTGCGVASWGAYL  RNV  MSFAPRD+HEA
Sbjct: 184 TQFPQGADKYIDQLASVIPMENGTVRTALDTGCGVASWGAYLWSRNVRAMSFAPRDSHEA 243

Query: 240 QVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN 283
           QVQFALERGVPAVIGVLGTI LPYP+RAFDMA CSRCLIPW +N
Sbjct: 244 QVQFALERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWGAN 287

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SZX8|PMTH_ARATH Probable methyltransferase PMT17 OS=Arabidopsis thaliana GN=At4g10440 PE=3 SV=1

 Score =  337 bits (865), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 160/296 (54%), Positives = 211/296 (71%), Gaps = 22/296 (7%)

Query: 2   GKHNSSGSRTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITK---QADCN--- 55
           G H+ + +R +    IL V  LC  FY+LGAWQ       +T+ S I+K   +   N   
Sbjct: 7   GHHHQTEARRKKLTLILGVSGLCILFYVLGAWQ------ANTVPSSISKLGCETQSNPSS 60

Query: 56  --------IFTDLSFETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRE 107
                      +L F++H N +E+ E ++   K F+PC++  S+YTPC+++ R  +F R 
Sbjct: 61  SSSSSSSSESAELDFKSH-NQIELKETNQ-TIKYFEPCELSLSEYTPCEDRQRGRRFDRN 118

Query: 108 NMTYRERHCPPEDEKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQ 167
            M YRERHCP +DE L+CLIP P  Y  PF WP+ RDY  Y N+PHK L+VEKAVQNW+Q
Sbjct: 119 MMKYRERHCPVKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSVEKAVQNWIQ 178

Query: 168 FQGNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVL 227
            +G+ F+FPGGGTMFP+GADAYID++A +IP+ DG +RTA+DTGCGVAS+GAYLLKR+++
Sbjct: 179 VEGDRFRFPGGGTMFPRGADAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAYLLKRDIM 238

Query: 228 TMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN 283
            +SFAPRD HEAQVQFALERGVPA+IG++G+  LPYP+RAFD+A CSRCLIPW  N
Sbjct: 239 AVSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFKN 294

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9C884|PMTI_ARATH Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1

 Score =  327 bits (839), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 159/317 (50%), Positives = 210/317 (66%), Gaps = 40/317 (12%)

Query: 1   MGKHNSSGS----RTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADCNI 56
           M K NSS S    + +    IL V  LC   Y+LG+WQ +      T +S+   +  C+ 
Sbjct: 1   MAKENSSHSLAEAKRKRLTWILCVSGLCILSYVLGSWQTNTV---PTSSSEAYSRMGCDE 57

Query: 57  F-----------------------------TDLSFETHHN-DVEIVEPSEPKAKVFKPCD 86
                                          +L FE+HH  +++I   +    K F+PCD
Sbjct: 58  TSTTTRAQTTQTQTNPSSDDTSSSLSSSEPVELDFESHHKLELKITNQT---VKYFEPCD 114

Query: 87  VKYSDYTPCQEQDRAMKFPRENMTYRERHCPPEDEKLHCLIPAPKGYMTPFPWPKGRDYV 146
           +  S+YTPC++++R  +F R  M YRERHCP +DE L+CLIP P  Y  PF WP+ RDY 
Sbjct: 115 MSLSEYTPCEDRERGRRFDRNMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWPQSRDYA 174

Query: 147 HYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRT 206
            Y N+PHK L++EKA+QNW+Q +G  F+FPGGGTMFP+GADAYID++A +IP+ DG++RT
Sbjct: 175 WYDNIPHKELSIEKAIQNWIQVEGERFRFPGGGTMFPRGADAYIDDIARLIPLTDGAIRT 234

Query: 207 ALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSR 266
           A+DTGCGVAS+GAYLLKR+++ MSFAPRD HEAQVQFALERGVPA+IG++G+  LPYP+R
Sbjct: 235 AIDTGCGVASFGAYLLKRDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPAR 294

Query: 267 AFDMAQCSRCLIPWTSN 283
           AFD+A CSRCLIPW  N
Sbjct: 295 AFDLAHCSRCLIPWFQN 311

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O80844|PMTG_ARATH Probable methyltransferase PMT16 OS=Arabidopsis thaliana GN=At2g45750 PE=3 SV=1

 Score =  320 bits (819), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 154/284 (54%), Positives = 193/284 (67%), Gaps = 9/284 (3%)

Query: 6   SSGSRTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADCNIFT------D 59
           SS ++  +   + +V +LC   Y+LG WQ +        A   +    C  FT      D
Sbjct: 8   SSRTKKANLYYVTLVALLCIASYLLGIWQNTAVNP--RAAFDDSDGTPCEGFTRPNSTKD 65

Query: 60  LSFETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPE 119
           L F+ HHN ++   P    A  F  C    S++TPC++  R++KF RE + YR+RHCP  
Sbjct: 66  LDFDAHHN-IQDPPPVTETAVSFPSCAAALSEHTPCEDAKRSLKFSRERLEYRQRHCPER 124

Query: 120 DEKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGG 179
           +E L C IPAP GY TPF WP  RD   +ANVPH  LTVEK  QNWV+++ + F FPGGG
Sbjct: 125 EEILKCRIPAPYGYKTPFRWPASRDVAWFANVPHTELTVEKKNQNWVRYENDRFWFPGGG 184

Query: 180 TMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEA 239
           TMFP+GADAYID++  +I + DGS+RTA+DTGCGVAS+GAYLL RN+ TMSFAPRD HEA
Sbjct: 185 TMFPRGADAYIDDIGRLIDLSDGSIRTAIDTGCGVASFGAYLLSRNITTMSFAPRDTHEA 244

Query: 240 QVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN 283
           QVQFALERGVPA+IG++ TI LPYPSRAFD+A CSRCLIPW  N
Sbjct: 245 QVQFALERGVPAMIGIMATIRLPYPSRAFDLAHCSRCLIPWGQN 288

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9ZPH9|PMTF_ARATH Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1

 Score =  317 bits (812), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 149/271 (54%), Positives = 196/271 (72%), Gaps = 8/271 (2%)

Query: 17  ILIVIVLCGFFYMLGAWQKSGFG-KGDTIASQITKQADCNIFTD----LSFETHHNDVEI 71
           ++++ +LC  FY +G WQ SG G    +I++       C         L+F + H   ++
Sbjct: 25  VILIAILCVTFYFVGVWQHSGRGISRSSISNHELTSVPCTFPHQTTPILNFASRHTAPDL 84

Query: 72  VEPSEPKAKVFK--PCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPEDEKLHCLIPA 129
             P+   A+V +   C V++S+YTPC+  +R++ FPRE + YRERHCP + E + C IPA
Sbjct: 85  -PPTITDARVVQIPSCGVEFSEYTPCEFVNRSLNFPRERLIYRERHCPEKHEIVRCRIPA 143

Query: 130 PKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMFPQGADAY 189
           P GY  PF WP+ RD   +ANVPH  LTVEK  QNWV+++ + F FPGGGTMFP+GADAY
Sbjct: 144 PYGYSLPFRWPESRDVAWFANVPHTELTVEKKNQNWVRYEKDRFLFPGGGTMFPRGADAY 203

Query: 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV 249
           IDE+  +I +KDGS+RTA+DTGCGVAS+GAYL+ RN++TMSFAPRD HEAQVQFALERGV
Sbjct: 204 IDEIGRLINLKDGSIRTAIDTGCGVASFGAYLMSRNIVTMSFAPRDTHEAQVQFALERGV 263

Query: 250 PAVIGVLGTIHLPYPSRAFDMAQCSRCLIPW 280
           PA+IGVL +I LP+P+RAFD+A CSRCLIPW
Sbjct: 264 PAIIGVLASIRLPFPARAFDIAHCSRCLIPW 294

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q94II3|PMTL_ARATH Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1

 Score =  263 bits (672), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 127/280 (45%), Positives = 172/280 (61%), Gaps = 17/280 (6%)

Query: 3   KHNSSGSRTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADCNIFTDLSF 62
           K+  +   +R     +++I+LCG  + LG       GK     S + K    ++  D S 
Sbjct: 7   KYEKAEKGSRILPKTVLLILLCGLSFYLGGLY---CGKNIIEVSDVAKAESSSLDVDDSL 63

Query: 63  ETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPEDEK 122
           +              K+  F  C   Y DYTPC +  +  K+    +T+ ERHCPP  ++
Sbjct: 64  QV-------------KSVSFSECSSDYQDYTPCTDPRKWKKYGTHRLTFMERHCPPVFDR 110

Query: 123 LHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMF 182
             CL+P P GY  P  WPK +D   Y NVP+  +  +K+ QNW++ +G  F FPGGGTMF
Sbjct: 111 KQCLVPPPDGYKPPIRWPKSKDECWYRNVPYDWINKQKSNQNWLRKEGEKFIFPGGGTMF 170

Query: 183 PQGADAYIDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQV 241
           P G  AY+D +  +IP +KDG++RTA+DTGCGVASWG  LL R +LT+S APRDNHEAQV
Sbjct: 171 PHGVSAYVDLMQDLIPEMKDGTIRTAIDTGCGVASWGGDLLDRGILTVSLAPRDNHEAQV 230

Query: 242 QFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWT 281
           QFALERG+PA++G++ T  LP+PS +FDMA CSRCLIPWT
Sbjct: 231 QFALERGIPAILGIISTQRLPFPSNSFDMAHCSRCLIPWT 270

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9C6S7|PMTK_ARATH Probable methyltransferase PMT20 OS=Arabidopsis thaliana GN=At1g31850 PE=1 SV=1

 Score =  258 bits (658), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 131/283 (46%), Positives = 175/283 (61%), Gaps = 13/283 (4%)

Query: 2   GKHNSSGSRTRSPLSILIV--IVLCGFFYMLGAWQKSGFGKGDTIASQITKQADCNIFTD 59
           GK +S   +  S +  L V  I  CGF + LG    S   K   +A  +T+     + + 
Sbjct: 4   GKQSSQPEKGTSRILSLTVLFIAFCGFSFYLGGIFCSERDK--IVAKDVTRTTTKAVASP 61

Query: 60  LSFETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPE 119
                         P + K+  F  C  ++ DYTPC +  R  K+    +++ ERHCPP 
Sbjct: 62  KE--------PTATPIQIKSVSFPECGSEFQDYTPCTDPKRWKKYGVHRLSFLERHCPPV 113

Query: 120 DEKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGG 179
            EK  CLIP P GY  P  WPK R+   Y NVP+  +  +K+ Q+W++ +G+ F FPGGG
Sbjct: 114 YEKNECLIPPPDGYKPPIRWPKSREQCWYRNVPYDWINKQKSNQHWLKKEGDKFHFPGGG 173

Query: 180 TMFPQGADAYIDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHE 238
           TMFP+G   Y+D +  +IP +KDG+VRTA+DTGCGVASWG  LL R +L++S APRDNHE
Sbjct: 174 TMFPRGVSHYVDLMQDLIPEMKDGTVRTAIDTGCGVASWGGDLLDRGILSLSLAPRDNHE 233

Query: 239 AQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWT 281
           AQVQFALERG+PA++G++ T  LP+PS AFDMA CSRCLIPWT
Sbjct: 234 AQVQFALERGIPAILGIISTQRLPFPSNAFDMAHCSRCLIPWT 276

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9ZW75|PMTJ_ARATH Probable methyltransferase PMT19 OS=Arabidopsis thaliana GN=At2g43200 PE=3 SV=1

 Score =  246 bits (629), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 114/202 (56%), Positives = 139/202 (68%), Gaps = 1/202 (0%)

Query: 82  FKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPP-EDEKLHCLIPAPKGYMTPFPWP 140
           F  C   +++Y PC +   A ++  E    RERHCP    EK  CL+P P GY TPFPWP
Sbjct: 91  FPLCPKNFTNYLPCHDPSTARQYSIERHYRRERHCPDIAQEKFRCLVPKPTGYKTPFPWP 150

Query: 141 KGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMFPQGADAYIDELASVIPIK 200
           + R Y  + NVP K L   K  QNWV+ +G+ F FPGGGT FP G   Y+D + SV+P+ 
Sbjct: 151 ESRKYAWFRNVPFKRLAELKKTQNWVRLEGDRFVFPGGGTSFPGGVKDYVDVILSVLPLA 210

Query: 201 DGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIH 260
            GS+RT LD GCGVAS+GA+LL   +LTMS APRD HEAQVQFALERG+PA++GVL T  
Sbjct: 211 SGSIRTVLDIGCGVASFGAFLLNYKILTMSIAPRDIHEAQVQFALERGLPAMLGVLSTYK 270

Query: 261 LPYPSRAFDMAQCSRCLIPWTS 282
           LPYPSR+FDM  CSRCL+ WTS
Sbjct: 271 LPYPSRSFDMVHCSRCLVNWTS 292

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q940J9|PMT8_ARATH Probable methyltransferase PMT8 OS=Arabidopsis thaliana GN=At1g04430 PE=1 SV=1

 Score =  225 bits (574), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 121/291 (41%), Positives = 163/291 (56%), Gaps = 11/291 (3%)

Query: 1   MGKHNSSGSRTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADCNIFTDL 60
           M   +  G + R   S+ +V +   F +M       G    +   S     +      D 
Sbjct: 2   MRGRSDGGLKKRLIASVCVVALFVCFLFMYYGSSSQGASALEYGRSLRKLGSSYLSGDDD 61

Query: 61  SFETHHND-VEIVEPSEPKAKVFKPCDVKYSDYTPCQEQD----RAMKFPRENMTYRERH 115
           + +T  +D V   E S   AK F  CD ++S+  PC +++      +K     M + ERH
Sbjct: 62  NGDTKQDDSVANAEDSLVVAKSFPVCDDRHSEIIPCLDRNFIYQMRLKLDLSLMEHYERH 121

Query: 116 CPPEDEKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKF 175
           CPP + + +CLIP P GY  P  WPK RD V  AN+PH  L  EK+ QNW+  +G    F
Sbjct: 122 CPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAKEKSDQNWMVEKGEKISF 181

Query: 176 PGGGTMFPQGADAYIDELASVIPIK------DGSVRTALDTGCGVASWGAYLLKRNVLTM 229
           PGGGT F  GAD YI  +A+++         +G +RT LD GCGVAS+GAYLL  +++TM
Sbjct: 182 PGGGTHFHYGADKYIASIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIMTM 241

Query: 230 SFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPW 280
           S AP D H+ Q+QFALERG+PA +GVLGT  LPYPSR+F+ A CSRC I W
Sbjct: 242 SLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDW 292

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
224126563	612	predicted protein [Populus trichocarpa]	0.992	0.459	0.893	1e-152
359474588	611	PREDICTED: probable methyltransferase PM	0.992	0.459	0.868	1e-148
224138032	605	predicted protein [Populus trichocarpa]	0.975	0.456	0.873	1e-146
255575722	612	ATP binding protein, putative [Ricinus c	0.992	0.459	0.843	1e-144
356511449	613	PREDICTED: probable methyltransferase PM	0.992	0.458	0.833	1e-141
449464908	614	PREDICTED: probable methyltransferase PM	0.989	0.456	0.811	1e-139
297800264	624	dehydration-responsive family protein [A	0.992	0.450	0.823	1e-138
22328758	621	putative methyltransferase PMT14 [Arabid	0.992	0.452	0.823	1e-137
222423309	621	AT4G18030 [Arabidopsis thaliana]	0.992	0.452	0.823	1e-137
356563439	613	PREDICTED: probable methyltransferase PM	0.992	0.458	0.812	1e-137

>gi|224126563|ref|XP_002329585.1| predicted protein [Populus trichocarpa] gi|222870294|gb|EEF07425.1| predicted protein [Populus trichocarpa]

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 251/281 (89%), Positives = 265/281 (94%)

Query: 3   KHNSSGSRTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADCNIFTDLSF 62
           KHNS+G +TRSPLSI IVI LC FFY+LGAWQKSGFGKGD IA Q++KQ DC IF DL+F
Sbjct: 4   KHNSAGFKTRSPLSIFIVICLCCFFYILGAWQKSGFGKGDGIAVQMSKQTDCQIFPDLNF 63

Query: 63  ETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPEDEK 122
           ETHHNDVEI+EPS+PKAKVFKPCDVKY+DYTPCQEQDRAM FPRENM YRERHCP E+EK
Sbjct: 64  ETHHNDVEIIEPSKPKAKVFKPCDVKYTDYTPCQEQDRAMTFPRENMIYRERHCPREEEK 123

Query: 123 LHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMF 182
           LHCLIPAPKGY TPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQG+VFKFPGGGTMF
Sbjct: 124 LHCLIPAPKGYTTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGDVFKFPGGGTMF 183

Query: 183 PQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQ 242
           PQGADAYIDELASVIPI DGSVRTALDTGCGVASWGAYL+KRNVL MSFAPRDNHEAQVQ
Sbjct: 184 PQGADAYIDELASVIPIADGSVRTALDTGCGVASWGAYLMKRNVLAMSFAPRDNHEAQVQ 243

Query: 243 FALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN 283
           FALERGVPAVIGVLG+IHLPYPSRAFDMAQCSRCLIPW +N
Sbjct: 244 FALERGVPAVIGVLGSIHLPYPSRAFDMAQCSRCLIPWAAN 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474588|ref|XP_002282093.2| PREDICTED: probable methyltransferase PMT14-like [Vitis vinifera]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 244/281 (86%), Positives = 264/281 (93%)

Query: 3   KHNSSGSRTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADCNIFTDLSF 62
           KHN SG+RTRSP+SI IVI LC FFY+LGAWQ+SGFGKGD+IA +ITKQ DCNI ++L+F
Sbjct: 4   KHNPSGNRTRSPVSIFIVIGLCCFFYILGAWQRSGFGKGDSIALEITKQTDCNIISNLNF 63

Query: 63  ETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPEDEK 122
           ETHHN+V+ +EPS+ K +VFKPCD KY+DYTPCQEQDRAMKFPRENM YRERHCP E+EK
Sbjct: 64  ETHHNNVDSIEPSQLKVEVFKPCDDKYTDYTPCQEQDRAMKFPRENMIYRERHCPEEEEK 123

Query: 123 LHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMF 182
           LHCLIPAPKGY TPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQG+VFKFPGGGTMF
Sbjct: 124 LHCLIPAPKGYKTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGDVFKFPGGGTMF 183

Query: 183 PQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQ 242
           PQGADAYIDELASVIPI DGSVRTALDTGCGVASWGAYLLKRNVL MSFAPRDNHEAQVQ
Sbjct: 184 PQGADAYIDELASVIPIADGSVRTALDTGCGVASWGAYLLKRNVLPMSFAPRDNHEAQVQ 243

Query: 243 FALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN 283
           FALERGVPA+IGVLG+I LPYP+RAFDMAQCSRCLIPWTSN
Sbjct: 244 FALERGVPAIIGVLGSIRLPYPARAFDMAQCSRCLIPWTSN 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138032|ref|XP_002326501.1| predicted protein [Populus trichocarpa] gi|222833823|gb|EEE72300.1| predicted protein [Populus trichocarpa]

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 241/276 (87%), Positives = 259/276 (93%)

Query: 8   GSRTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADCNIFTDLSFETHHN 67
           G +TR+ LSI +VI LC  FY+LGAWQKSGFGKGD IA Q+TK+ DCNIFT+L+FETHHN
Sbjct: 2   GFKTRNSLSIFVVICLCCLFYILGAWQKSGFGKGDGIAVQMTKKTDCNIFTELNFETHHN 61

Query: 68  DVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPEDEKLHCLI 127
            VEI+EPS+PKAKVFKPC VKY+DYTPCQEQDRAMKFPRENM YRERHCPPE+EKLHCLI
Sbjct: 62  YVEIIEPSQPKAKVFKPCHVKYTDYTPCQEQDRAMKFPRENMIYRERHCPPEEEKLHCLI 121

Query: 128 PAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMFPQGAD 187
           PAPKGY TPFPWPKGRDYV YANVP+KSLTVEKAVQNWVQFQG+VFKFPGGGTMFPQGAD
Sbjct: 122 PAPKGYKTPFPWPKGRDYVRYANVPYKSLTVEKAVQNWVQFQGDVFKFPGGGTMFPQGAD 181

Query: 188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER 247
           AYIDELASVIPI DGSVRTALDTGCGVASWGAYL+KRNVL MSFAPRDNHEAQVQFALER
Sbjct: 182 AYIDELASVIPIADGSVRTALDTGCGVASWGAYLMKRNVLAMSFAPRDNHEAQVQFALER 241

Query: 248 GVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN 283
           GVPAVIGVLG+I LP+PSRAFDMAQCSRCLIPWT+N
Sbjct: 242 GVPAVIGVLGSIRLPFPSRAFDMAQCSRCLIPWTAN 277

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575722|ref|XP_002528760.1| ATP binding protein, putative [Ricinus communis] gi|223531763|gb|EEF33582.1| ATP binding protein, putative [Ricinus communis]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 237/281 (84%), Positives = 260/281 (92%)

Query: 3   KHNSSGSRTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADCNIFTDLSF 62
           K N +G+RTRSPLSI IV  LC FFY+LGAWQKSGFGKGD+IA ++TKQ DCNIF +L+F
Sbjct: 4   KLNPTGNRTRSPLSIFIVFCLCCFFYVLGAWQKSGFGKGDSIAFEVTKQTDCNIFPELNF 63

Query: 63  ETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPEDEK 122
           E  HN VEI++PS+PKA+VFKPCDVKY+DYTPCQEQDRAMKF RENM YRERHCPPE+EK
Sbjct: 64  EPRHNIVEIIQPSKPKAEVFKPCDVKYTDYTPCQEQDRAMKFSRENMIYRERHCPPEEEK 123

Query: 123 LHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMF 182
           LHCLIPAP+GY TPFPWPKGRDYVH+ANVP+KSLTVEKA Q+WV+FQG+VFKFPGGGTMF
Sbjct: 124 LHCLIPAPEGYKTPFPWPKGRDYVHFANVPYKSLTVEKANQHWVEFQGDVFKFPGGGTMF 183

Query: 183 PQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQ 242
           PQGAD YIDELASVIPI DGSVRTALDTGCGVASWGAYL KRNVL MSFAPRDNHEAQ+Q
Sbjct: 184 PQGADKYIDELASVIPIADGSVRTALDTGCGVASWGAYLTKRNVLAMSFAPRDNHEAQIQ 243

Query: 243 FALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN 283
           FALERGVPA+IGVLG+I LPYPSRAFDMAQCSRCLIPWTSN
Sbjct: 244 FALERGVPAIIGVLGSIRLPYPSRAFDMAQCSRCLIPWTSN 284

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511449|ref|XP_003524439.1| PREDICTED: probable methyltransferase PMT14-like [Glycine max]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 235/282 (83%), Positives = 251/282 (89%), Gaps = 1/282 (0%)

Query: 3   KHNSSGSRTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITK-QADCNIFTDLS 61
           K N+SG R R PLSI  V+ LC FFY+LGAWQ+SG GKGD +A ++     DC +  +LS
Sbjct: 4   KTNASGHRARRPLSIFAVLGLCCFFYLLGAWQRSGSGKGDNLALKVNNLMTDCTVLPNLS 63

Query: 62  FETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPEDE 121
           FE+HHNDVEIVEP+EPKAK FKPCDVKY+DYTPCQEQDRAM FPRENM YRERHCP E E
Sbjct: 64  FESHHNDVEIVEPAEPKAKEFKPCDVKYTDYTPCQEQDRAMTFPRENMIYRERHCPAEKE 123

Query: 122 KLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTM 181
           KL CLIPAP+GY TPFPWPK RDY +YANVP+KSLTVEKAVQNWVQFQGNVFKFPGGGTM
Sbjct: 124 KLRCLIPAPEGYTTPFPWPKSRDYAYYANVPYKSLTVEKAVQNWVQFQGNVFKFPGGGTM 183

Query: 182 FPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQV 241
           FP GADAYIDELASVIPI DGSVRTALDTGCGVASWGAYLLKRNVL MSFAP+DNHEAQV
Sbjct: 184 FPHGADAYIDELASVIPIADGSVRTALDTGCGVASWGAYLLKRNVLAMSFAPKDNHEAQV 243

Query: 242 QFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN 283
           QFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN
Sbjct: 244 QFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464908|ref|XP_004150171.1| PREDICTED: probable methyltransferase PMT14-like [Cucumis sativus] gi|449513569|ref|XP_004164359.1| PREDICTED: probable methyltransferase PMT14-like [Cucumis sativus]

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 228/281 (81%), Positives = 255/281 (90%), Gaps = 1/281 (0%)

Query: 3   KHNSSGSRTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADCNIFTDLSF 62
           KHN   +R R P+S+  VI LC FFY+LGAWQ+SGFGKGD+IA +IT+ ++CN   DL+F
Sbjct: 4   KHNLPANRNRGPISLFAVIGLCLFFYILGAWQRSGFGKGDSIAMEITRLSNCNTVKDLNF 63

Query: 63  ETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPEDEK 122
           ETHH+ +EIVE +EPKAKVFKPCD K++DYTPCQEQDRAM+FPRE+M YRERHCP  DEK
Sbjct: 64  ETHHS-IEIVESTEPKAKVFKPCDKKFTDYTPCQEQDRAMRFPRESMIYRERHCPAVDEK 122

Query: 123 LHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMF 182
           LHCLIPAPKGYMTPFPWPKGRDYVHYANVP+KSLTVEKA Q+WV+FQGNVFKFPGGGTMF
Sbjct: 123 LHCLIPAPKGYMTPFPWPKGRDYVHYANVPYKSLTVEKANQHWVEFQGNVFKFPGGGTMF 182

Query: 183 PQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQ 242
           PQGADAYIDELASVIPI DGS+RTALDTGCGVASWGAYL KRNVL +SFAPRDNHEAQ+Q
Sbjct: 183 PQGADAYIDELASVIPIADGSIRTALDTGCGVASWGAYLFKRNVLAISFAPRDNHEAQIQ 242

Query: 243 FALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN 283
           FALERGVPA IGVLG+I LP+PSR+FDMAQCSRCLIPWTSN
Sbjct: 243 FALERGVPAFIGVLGSIRLPFPSRSFDMAQCSRCLIPWTSN 283

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800264|ref|XP_002868016.1| dehydration-responsive family protein [Arabidopsis lyrata subsp. lyrata] gi|297313852|gb|EFH44275.1| dehydration-responsive family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  495 bits (1274), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 233/283 (82%), Positives = 254/283 (89%), Gaps = 2/283 (0%)

Query: 3   KHNSSGS-RTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADC-NIFTDL 60
           KHN  G+ R+RS LS+L+V+ LC FFY+LGAWQKSGFGKGD+IA +ITKQA C +I TDL
Sbjct: 4   KHNPPGNNRSRSTLSLLVVVGLCCFFYLLGAWQKSGFGKGDSIAMEITKQAQCTDIVTDL 63

Query: 61  SFETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPED 120
            FE HHN V+I   ++PK   FKPCDVK  DYTPCQEQDRAMKFPRENM YRERHCPP++
Sbjct: 64  DFEPHHNTVKIPRKADPKPVSFKPCDVKLKDYTPCQEQDRAMKFPRENMIYRERHCPPDN 123

Query: 121 EKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGT 180
           EKL CL+PAPKGYMTPFPWPK RDYVHYAN P KSLTVEKA QNWVQFQGNVFKFPGGGT
Sbjct: 124 EKLRCLVPAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKAGQNWVQFQGNVFKFPGGGT 183

Query: 181 MFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQ 240
           MFPQGADAYI+ELASVIPIKDGSVRTALDTGCGVASWGAY+LKRNVLTMSFAPRDNHEAQ
Sbjct: 184 MFPQGADAYIEELASVIPIKDGSVRTALDTGCGVASWGAYMLKRNVLTMSFAPRDNHEAQ 243

Query: 241 VQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN 283
           VQFALERGVPA+I VLG+I LPYP+RAFDMAQCSRCLIPWT+N
Sbjct: 244 VQFALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWTAN 286

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328758|ref|NP_193537.2| putative methyltransferase PMT14 [Arabidopsis thaliana] gi|75250016|sp|Q94EJ6.1|PMTE_ARATH RecName: Full=Probable methyltransferase PMT14 gi|15294146|gb|AAK95250.1|AF410264_1 AT4g18030/T6K21_210 [Arabidopsis thaliana] gi|24797056|gb|AAN64540.1| At4g18030/T6K21_210 [Arabidopsis thaliana] gi|332658586|gb|AEE83986.1| putative methyltransferase PMT14 [Arabidopsis thaliana]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 233/283 (82%), Positives = 254/283 (89%), Gaps = 2/283 (0%)

Query: 3   KHNSSGS-RTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADC-NIFTDL 60
           KHN  G+ R+RS LS+L+V+ LC FFY+LGAWQKSGFGKGD+IA +ITKQA C +I TDL
Sbjct: 4   KHNPPGNNRSRSTLSLLVVVGLCCFFYLLGAWQKSGFGKGDSIAMEITKQAQCTDIVTDL 63

Query: 61  SFETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPED 120
            FE HHN V+I   ++PK   FKPCDVK  DYTPCQEQDRAMKFPRENM YRERHCPP++
Sbjct: 64  DFEPHHNTVKIPHKADPKPVSFKPCDVKLKDYTPCQEQDRAMKFPRENMIYRERHCPPDN 123

Query: 121 EKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGT 180
           EKL CL+PAPKGYMTPFPWPK RDYVHYAN P KSLTVEKA QNWVQFQGNVFKFPGGGT
Sbjct: 124 EKLRCLVPAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKAGQNWVQFQGNVFKFPGGGT 183

Query: 181 MFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQ 240
           MFPQGADAYI+ELASVIPIKDGSVRTALDTGCGVASWGAY+LKRNVLTMSFAPRDNHEAQ
Sbjct: 184 MFPQGADAYIEELASVIPIKDGSVRTALDTGCGVASWGAYMLKRNVLTMSFAPRDNHEAQ 243

Query: 241 VQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN 283
           VQFALERGVPA+I VLG+I LPYP+RAFDMAQCSRCLIPWT+N
Sbjct: 244 VQFALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWTAN 286

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222423309|dbj|BAH19630.1| AT4G18030 [Arabidopsis thaliana]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 233/283 (82%), Positives = 254/283 (89%), Gaps = 2/283 (0%)

Query: 3   KHNSSGS-RTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADC-NIFTDL 60
           KHN  G+ R+RS LS+L+V+ LC FFY+LGAWQKSGFGKGD+IA +ITKQA C +I TDL
Sbjct: 4   KHNPPGNNRSRSTLSLLVVVGLCCFFYLLGAWQKSGFGKGDSIAMEITKQAQCTDIVTDL 63

Query: 61  SFETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPED 120
            FE HHN V+I   ++PK   FKPCDVK  DYTPCQEQDRAMKFPRENM YRERHCPP++
Sbjct: 64  DFEPHHNTVKIPHKADPKPVSFKPCDVKLKDYTPCQEQDRAMKFPRENMIYRERHCPPDN 123

Query: 121 EKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGT 180
           EKL CL+PAPKGYMTPFPWPK RDYVHYAN P KSLTVEKA QNWVQFQGNVFKFPGGGT
Sbjct: 124 EKLRCLVPAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKAGQNWVQFQGNVFKFPGGGT 183

Query: 181 MFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQ 240
           MFPQGADAYI+ELASVIPIKDGSVRTALDTGCGVASWGAY+LKRNVLTMSFAPRDNHEAQ
Sbjct: 184 MFPQGADAYIEELASVIPIKDGSVRTALDTGCGVASWGAYMLKRNVLTMSFAPRDNHEAQ 243

Query: 241 VQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN 283
           VQFALERGVPA+I VLG+I LPYP+RAFDMAQCSRCLIPWT+N
Sbjct: 244 VQFALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWTAN 286

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563439|ref|XP_003549970.1| PREDICTED: probable methyltransferase PMT14-like [Glycine max]

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 229/282 (81%), Positives = 247/282 (87%), Gaps = 1/282 (0%)

Query: 3   KHNSSGSRTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITK-QADCNIFTDLS 61
           K N+SG R R PLSI  V+ LC FFY+LGAWQ+SG GK D +A ++      C +  +LS
Sbjct: 4   KTNASGYRARRPLSIFAVLGLCCFFYLLGAWQRSGSGKADKLALKVNNLMTGCTVLPNLS 63

Query: 62  FETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPEDE 121
           FE+HH+DVEIV P   KAK FKPCD+KY+DYTPCQEQD+AMKFPRENM YRERHCP E E
Sbjct: 64  FESHHSDVEIVRPDVLKAKAFKPCDMKYTDYTPCQEQDQAMKFPRENMIYRERHCPAEKE 123

Query: 122 KLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTM 181
           KLHCLIPAP+GY TPFPWPK RDY +YANVP+KSLTVEKAVQNWVQFQGNVFKFPGGGTM
Sbjct: 124 KLHCLIPAPEGYTTPFPWPKSRDYAYYANVPYKSLTVEKAVQNWVQFQGNVFKFPGGGTM 183

Query: 182 FPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQV 241
           FPQGADAYIDELASVIPI DGSVRTALDTGCGVASWGAYLLKRNVL MSFAP+DNHEAQV
Sbjct: 184 FPQGADAYIDELASVIPIADGSVRTALDTGCGVASWGAYLLKRNVLAMSFAPKDNHEAQV 243

Query: 242 QFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN 283
           QFALERGVPAVIGVLGTI LPYPSRAFDMAQCSRCLIPWTSN
Sbjct: 244 QFALERGVPAVIGVLGTIRLPYPSRAFDMAQCSRCLIPWTSN 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
TAIR|locus:2141035	621	AT4G18030 [Arabidopsis thalian	1.0	0.455	0.821	1.7e-130
TAIR|locus:2202805	616	AT1G26850 [Arabidopsis thalian	0.992	0.456	0.718	2.2e-114
TAIR|locus:2196651	639	AT1G33170 [Arabidopsis thalian	0.787	0.348	0.622	6.4e-87
TAIR|locus:2127711	633	AT4G10440 [Arabidopsis thalian	0.989	0.442	0.551	7.7e-87
TAIR|locus:2050679	631	AT2G45750 [Arabidopsis thalian	0.971	0.435	0.542	2.5e-81
TAIR|locus:2117728	633	AT4G00750 [Arabidopsis thalian	0.929	0.415	0.557	3.2e-81
TAIR|locus:2134756	600	ERD3 "early-responsive to dehy	0.904	0.426	0.469	3.6e-66
TAIR|locus:2034522	603	AT1G31850 [Arabidopsis thalian	0.954	0.447	0.462	1.2e-65
TAIR|locus:2041031	611	AT2G43200 [Arabidopsis thalian	0.734	0.340	0.550	3.8e-62
TAIR|locus:2063947	694	AT2G39750 [Arabidopsis thalian	0.759	0.309	0.5	2e-57

TAIR|locus:2141035 AT4G18030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1280 (455.6 bits), Expect = 1.7e-130, P = 1.7e-130
 Identities = 235/286 (82%), Positives = 256/286 (89%)

Query:     1 MG-KHNSSGS-RTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADC-NIF 57
             MG KHN  G+ R+RS LS+L+V+ LC FFY+LGAWQKSGFGKGD+IA +ITKQA C +I 
Sbjct:     1 MGSKHNPPGNNRSRSTLSLLVVVGLCCFFYLLGAWQKSGFGKGDSIAMEITKQAQCTDIV 60

Query:    58 TDLSFETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCP 117
             TDL FE HHN V+I   ++PK   FKPCDVK  DYTPCQEQDRAMKFPRENM YRERHCP
Sbjct:    61 TDLDFEPHHNTVKIPHKADPKPVSFKPCDVKLKDYTPCQEQDRAMKFPRENMIYRERHCP 120

Query:   118 PEDEKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPG 177
             P++EKL CL+PAPKGYMTPFPWPK RDYVHYAN P KSLTVEKA QNWVQFQGNVFKFPG
Sbjct:   121 PDNEKLRCLVPAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKAGQNWVQFQGNVFKFPG 180

Query:   178 GGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNH 237
             GGTMFPQGADAYI+ELASVIPIKDGSVRTALDTGCGVASWGAY+LKRNVLTMSFAPRDNH
Sbjct:   181 GGTMFPQGADAYIEELASVIPIKDGSVRTALDTGCGVASWGAYMLKRNVLTMSFAPRDNH 240

Query:   238 EAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN 283
             EAQVQFALERGVPA+I VLG+I LPYP+RAFDMAQCSRCLIPWT+N
Sbjct:   241 EAQVQFALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWTAN 286

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2202805 AT1G26850 [Arabidopsis thaliana (taxid:3702)]

 Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
 Identities = 204/284 (71%), Positives = 240/284 (84%)

Query:     3 KHNSSGSRTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQ-ADCNIFTDLS 61
             K +S+  +TRS + I IV  LC FFY+LGAWQ+SGFGKGD+IA ++T   ADCNI   L+
Sbjct:     4 KSSSADGKTRSSVQIFIVFSLCCFFYILGAWQRSGFGKGDSIALEMTNSGADCNIVPSLN 63

Query:    62 FETHH-NDVEIVEPSEP-KAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPE 119
             FETHH  +  +V  SE  K K F+PCD +Y+DYTPCQ+Q RAM FPR++M YRERHC PE
Sbjct:    64 FETHHAGESSLVGASEAAKVKAFEPCDGRYTDYTPCQDQRRAMTFPRDSMIYRERHCAPE 123

Query:   120 DEKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGG 179
             +EKLHCLIPAPKGY+TPF WPK RDYV YAN P+K+LTVEKA+QNW+Q++G+VF+FPGGG
Sbjct:   124 NEKLHCLIPAPKGYVTPFSWPKSRDYVPYANAPYKALTVEKAIQNWIQYEGDVFRFPGGG 183

Query:   180 TMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEA 239
             T FPQGAD YID+LASVIP+++G+VRTALDTGCGVASWGAYL  RNV  MSFAPRD+HEA
Sbjct:   184 TQFPQGADKYIDQLASVIPMENGTVRTALDTGCGVASWGAYLWSRNVRAMSFAPRDSHEA 243

Query:   240 QVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN 283
             QVQFALERGVPAVIGVLGTI LPYP+RAFDMA CSRCLIPW +N
Sbjct:   244 QVQFALERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWGAN 287

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2196651 AT1G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 830 (297.2 bits), Expect = 6.4e-87, Sum P(2) = 6.4e-87
 Identities = 140/225 (62%), Positives = 182/225 (80%)

Query:    59 DLSFETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPP 118
             +L FE+HH  +E+ + +    K F+PCD+  S+YTPC++++R  +F R  M YRERHCP 
Sbjct:    89 ELDFESHHK-LEL-KITNQTVKYFEPCDMSLSEYTPCEDRERGRRFDRNMMKYRERHCPS 146

Query:   119 EDEKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGG 178
             +DE L+CLIP P  Y  PF WP+ RDY  Y N+PHK L++EKA+QNW+Q +G  F+FPGG
Sbjct:   147 KDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSIEKAIQNWIQVEGERFRFPGG 206

Query:   179 GTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHE 238
             GTMFP+GADAYID++A +IP+ DG++RTA+DTGCGVAS+GAYLLKR+++ MSFAPRD HE
Sbjct:   207 GTMFPRGADAYIDDIARLIPLTDGAIRTAIDTGCGVASFGAYLLKRDIVAMSFAPRDTHE 266

Query:   239 AQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN 283
             AQVQFALERGVPA+IG++G+  LPYP+RAFD+A CSRCLIPW  N
Sbjct:   267 AQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFQN 311

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2127711 AT4G10440 [Arabidopsis thaliana (taxid:3702)]

 Score = 868 (310.6 bits), Expect = 7.7e-87, P = 7.7e-87
 Identities = 160/290 (55%), Positives = 212/290 (73%)

Query:     2 GKHNSSGSRTRSPLSILIVIVLCGFFYMLGAWQK----SGFGK-G-DTIA--SQITKQAD 53
             G H+ + +R +    IL V  LC  FY+LGAWQ     S   K G +T +  S  +  + 
Sbjct:     7 GHHHQTEARRKKLTLILGVSGLCILFYVLGAWQANTVPSSISKLGCETQSNPSSSSSSSS 66

Query:    54 CNIFTDLSFETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRE 113
              +   +L F++H N +E+ E ++   K F+PC++  S+YTPC+++ R  +F R  M YRE
Sbjct:    67 SSESAELDFKSH-NQIELKETNQT-IKYFEPCELSLSEYTPCEDRQRGRRFDRNMMKYRE 124

Query:   114 RHCPPEDEKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVF 173
             RHCP +DE L+CLIP P  Y  PF WP+ RDY  Y N+PHK L+VEKAVQNW+Q +G+ F
Sbjct:   125 RHCPVKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSVEKAVQNWIQVEGDRF 184

Query:   174 KFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAP 233
             +FPGGGTMFP+GADAYID++A +IP+ DG +RTA+DTGCGVAS+GAYLLKR+++ +SFAP
Sbjct:   185 RFPGGGTMFPRGADAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAYLLKRDIMAVSFAP 244

Query:   234 RDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN 283
             RD HEAQVQFALERGVPA+IG++G+  LPYP+RAFD+A CSRCLIPW  N
Sbjct:   245 RDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFKN 294

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2050679 AT2G45750 [Arabidopsis thaliana (taxid:3702)]

 Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
 Identities = 154/284 (54%), Positives = 193/284 (67%)

Query:     6 SSGSRTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADCNIFT------D 59
             SS ++  +   + +V +LC   Y+LG WQ +        A   +    C  FT      D
Sbjct:     8 SSRTKKANLYYVTLVALLCIASYLLGIWQNTAVNP--RAAFDDSDGTPCEGFTRPNSTKD 65

Query:    60 LSFETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPE 119
             L F+ HHN ++   P    A  F  C    S++TPC++  R++KF RE + YR+RHCP  
Sbjct:    66 LDFDAHHN-IQDPPPVTETAVSFPSCAAALSEHTPCEDAKRSLKFSRERLEYRQRHCPER 124

Query:   120 DEKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGG 179
             +E L C IPAP GY TPF WP  RD   +ANVPH  LTVEK  QNWV+++ + F FPGGG
Sbjct:   125 EEILKCRIPAPYGYKTPFRWPASRDVAWFANVPHTELTVEKKNQNWVRYENDRFWFPGGG 184

Query:   180 TMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEA 239
             TMFP+GADAYID++  +I + DGS+RTA+DTGCGVAS+GAYLL RN+ TMSFAPRD HEA
Sbjct:   185 TMFPRGADAYIDDIGRLIDLSDGSIRTAIDTGCGVASFGAYLLSRNITTMSFAPRDTHEA 244

Query:   240 QVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN 283
             QVQFALERGVPA+IG++ TI LPYPSRAFD+A CSRCLIPW  N
Sbjct:   245 QVQFALERGVPAMIGIMATIRLPYPSRAFDLAHCSRCLIPWGQN 288

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0010054 "trichoblast differentiation" evidence=RCA

TAIR|locus:2117728 AT4G00750 [Arabidopsis thaliana (taxid:3702)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 151/271 (55%), Positives = 198/271 (73%)

Query:    17 ILIVIVLCGFFYMLGAWQKSGFG-KGDTIASQITKQADCNI---FTD-LSFETHHNDVEI 71
             ++++ +LC  FY +G WQ SG G    +I++       C      T  L+F + H   ++
Sbjct:    25 VILIAILCVTFYFVGVWQHSGRGISRSSISNHELTSVPCTFPHQTTPILNFASRHTAPDL 84

Query:    72 VEPSEPKAKVFK-P-CDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPEDEKLHCLIPA 129
               P+   A+V + P C V++S+YTPC+  +R++ FPRE + YRERHCP + E + C IPA
Sbjct:    85 -PPTITDARVVQIPSCGVEFSEYTPCEFVNRSLNFPRERLIYRERHCPEKHEIVRCRIPA 143

Query:   130 PKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMFPQGADAY 189
             P GY  PF WP+ RD   +ANVPH  LTVEK  QNWV+++ + F FPGGGTMFP+GADAY
Sbjct:   144 PYGYSLPFRWPESRDVAWFANVPHTELTVEKKNQNWVRYEKDRFLFPGGGTMFPRGADAY 203

Query:   190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV 249
             IDE+  +I +KDGS+RTA+DTGCGVAS+GAYL+ RN++TMSFAPRD HEAQVQFALERGV
Sbjct:   204 IDEIGRLINLKDGSIRTAIDTGCGVASFGAYLMSRNIVTMSFAPRDTHEAQVQFALERGV 263

Query:   250 PAVIGVLGTIHLPYPSRAFDMAQCSRCLIPW 280
             PA+IGVL +I LP+P+RAFD+A CSRCLIPW
Sbjct:   264 PAIIGVLASIRLPFPARAFDIAHCSRCLIPW 294

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2134756 ERD3 "early-responsive to dehydration 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
 Identities = 129/275 (46%), Positives = 172/275 (62%)

Query:     8 GSRTRSPLSILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADCNIFTDLSFETHHN 67
             GSR   P ++L+++ LCG  + LG       GK     S + K    ++  D S +    
Sbjct:    14 GSRIL-PKTVLLIL-LCGLSFYLGGLY---CGKNIIEVSDVAKAESSSLDVDDSLQV--- 65

Query:    68 DVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPEDEKLHCLI 127
                       K+  F  C   Y DYTPC +  +  K+    +T+ ERHCPP  ++  CL+
Sbjct:    66 ----------KSVSFSECSSDYQDYTPCTDPRKWKKYGTHRLTFMERHCPPVFDRKQCLV 115

Query:   128 PAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMFPQGAD 187
             P P GY  P  WPK +D   Y NVP+  +  +K+ QNW++ +G  F FPGGGTMFP G  
Sbjct:   116 PPPDGYKPPIRWPKSKDECWYRNVPYDWINKQKSNQNWLRKEGEKFIFPGGGTMFPHGVS 175

Query:   188 AYIDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE 246
             AY+D +  +IP +KDG++RTA+DTGCGVASWG  LL R +LT+S APRDNHEAQVQFALE
Sbjct:   176 AYVDLMQDLIPEMKDGTIRTAIDTGCGVASWGGDLLDRGILTVSLAPRDNHEAQVQFALE 235

Query:   247 RGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWT 281
             RG+PA++G++ T  LP+PS +FDMA CSRCLIPWT
Sbjct:   236 RGIPAILGIISTQRLPFPSNSFDMAHCSRCLIPWT 270

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2034522 AT1G31850 [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 131/283 (46%), Positives = 177/283 (62%)

Query:     2 GKHNSSGSR-TRSPLSILIV-IVLCGFFYMLGAWQKSGFGKGDTIASQITKQADCNIFTD 59
             GK +S   + T   LS+ ++ I  CGF + LG    S   K   +A  +T+     + + 
Sbjct:     4 GKQSSQPEKGTSRILSLTVLFIAFCGFSFYLGGIFCSERDK--IVAKDVTRTTTKAVASP 61

Query:    60 LSFETHHNDVEIVEPSEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPPE 119
                           P + K+  F  C  ++ DYTPC +  R  K+    +++ ERHCPP 
Sbjct:    62 KE--------PTATPIQIKSVSFPECGSEFQDYTPCTDPKRWKKYGVHRLSFLERHCPPV 113

Query:   120 DEKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGG 179
              EK  CLIP P GY  P  WPK R+   Y NVP+  +  +K+ Q+W++ +G+ F FPGGG
Sbjct:   114 YEKNECLIPPPDGYKPPIRWPKSREQCWYRNVPYDWINKQKSNQHWLKKEGDKFHFPGGG 173

Query:   180 TMFPQGADAYIDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHE 238
             TMFP+G   Y+D +  +IP +KDG+VRTA+DTGCGVASWG  LL R +L++S APRDNHE
Sbjct:   174 TMFPRGVSHYVDLMQDLIPEMKDGTVRTAIDTGCGVASWGGDLLDRGILSLSLAPRDNHE 233

Query:   239 AQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWT 281
             AQVQFALERG+PA++G++ T  LP+PS AFDMA CSRCLIPWT
Sbjct:   234 AQVQFALERGIPAILGIISTQRLPFPSNAFDMAHCSRCLIPWT 276

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2041031 AT2G43200 [Arabidopsis thaliana (taxid:3702)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 115/209 (55%), Positives = 141/209 (67%)

Query:    75 SEPKAKVFKPCDVKYSDYTPCQEQDRAMKFPRENMTYRERHCPP-EDEKLHCLIPAPKGY 133
             S   +  F  C   +++Y PC +   A ++  E    RERHCP    EK  CL+P P GY
Sbjct:    84 SSSLSSYFPLCPKNFTNYLPCHDPSTARQYSIERHYRRERHCPDIAQEKFRCLVPKPTGY 143

Query:   134 MTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMFPQGADAYIDEL 193
              TPFPWP+ R Y  + NVP K L   K  QNWV+ +G+ F FPGGGT FP G   Y+D +
Sbjct:   144 KTPFPWPESRKYAWFRNVPFKRLAELKKTQNWVRLEGDRFVFPGGGTSFPGGVKDYVDVI 203

Query:   194 ASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVI 253
              SV+P+  GS+RT LD GCGVAS+GA+LL   +LTMS APRD HEAQVQFALERG+PA++
Sbjct:   204 LSVLPLASGSIRTVLDIGCGVASFGAFLLNYKILTMSIAPRDIHEAQVQFALERGLPAML 263

Query:   254 GVLGTIHLPYPSRAFDMAQCSRCLIPWTS 282
             GVL T  LPYPSR+FDM  CSRCL+ WTS
Sbjct:   264 GVLSTYKLPYPSRSFDMVHCSRCLVNWTS 292

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2063947 AT2G39750 [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 2.0e-57, Sum P(2) = 2.0e-57
 Identities = 113/226 (50%), Positives = 141/226 (62%)

Query:    67 NDVEIVEPS---EPKAKV----FKPCDVKYSDYTPCQEQ-DRAMKFPRENMTYR-ERHCP 117
             N  EIVE     + KA+V    F  C     +Y PC +  D   K        R ERHCP
Sbjct:   155 NQTEIVEAKSDGDSKARVRIKKFGMCPESMREYIPCLDNTDVIKKLKSTERGERFERHCP 214

Query:   118 PEDEKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPG 177
              + + L+CL+P PKGY  P PWPK RD V ++NVPH  L  +K  QNW+    N FKFPG
Sbjct:   215 EKGKGLNCLVPPPKGYRQPIPWPKSRDEVWFSNVPHTRLVEDKGGQNWISRDKNKFKFPG 274

Query:   178 GGTMFPQGADAYIDELASVIP-IKDGS-VRTALDTGCGVASWGAYLLKRNVLTMSFAPRD 235
             GGT F  GAD Y+D+++ ++  I  G  +R A+D GCGVAS+GAYLL R+V+TMS AP+D
Sbjct:   275 GGTQFIHGADQYLDQMSKMVSDITFGKHIRVAMDVGCGVASFGAYLLSRDVMTMSVAPKD 334

Query:   236 NHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWT 281
              HE Q+QFALERGVPA+     T  L YPS+AFD+  CSRC I WT
Sbjct:   335 VHENQIQFALERGVPAMAAAFATRRLLYPSQAFDLIHCSRCRINWT 380

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94EJ6	PMTE_ARATH	2, ., 1, ., 1, ., -	0.8233	0.9929	0.4524	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01180054 hypothetical protein (613 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	283
pfam03141	506	pfam03141, Methyltransf_29, Putative S-adenosyl-L-	1e-136
pfam13349	166	pfam13349, DUF4097, Domain of unknown function (DU	0.004

>gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase

 Score =  395 bits (1016), Expect = e-136
 Identities = 138/197 (70%), Positives = 155/197 (78%), Gaps = 4/197 (2%)

Query: 91  DYTPCQEQDRAMKF--PRENMTYRERHCPPEDEKLHCLIPAPKGYMTPFPWPKGRDYVHY 148
           DY PC + DRA+KF   RE M +RERHCPP +EKL CL+P P GY TP PWPK RD V Y
Sbjct: 1   DYIPCLDNDRAIKFLLSRERMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKVWY 60

Query: 149 ANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMFPQGADAYIDELASVIPI--KDGSVRT 206
           ANVPH  L  EK  QNWV+ +G+ F+FPGGGT FP GADAYID LA +IP     G VRT
Sbjct: 61  ANVPHTKLAEEKGGQNWVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDIAWGGRVRT 120

Query: 207 ALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSR 266
           ALD GCGVAS+GAYLL R+VLTMSFAP+D HEAQVQFALERGVPA++GVLGT  LPYPSR
Sbjct: 121 ALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPYPSR 180

Query: 267 AFDMAQCSRCLIPWTSN 283
           +FDMA CSRCLIPW +N
Sbjct: 181 SFDMAHCSRCLIPWHAN 197

This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506

>gnl|CDD|222062 pfam13349, DUF4097, Domain of unknown function (DUF4097)

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 14/91 (15%)

Query: 17  ILIVIVLCGFFYMLGAWQKSGFGKGDTIASQITKQADCNI------FTDLSFETHHNDVE 70
           I+I  +L G  +  G ++   F  G  I  +   +            TD+  ++   DVE
Sbjct: 11  IVIGGILLGIGFGAGGFKSVLFDNGFKIIDK-KTEKKTEEKTFNDDITDIDIDSSSADVE 69

Query: 71  IVEPSEPKAKVFKPCDVKYSDYTP-CQEQDR 100
           I       +K+     V Y       +    
Sbjct: 70  IKP--GDDSKI----KVTYKGKKLKVKVNGG 94

Length = 166

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	100.0
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.3
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.29
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.26
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.24
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.2
PRK05785	226	hypothetical protein; Provisional	99.17
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.16
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.13
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.12
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.09
PLN02244	340	tocopherol O-methyltransferase	99.08
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.06
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.0
PRK08317	241	hypothetical protein; Provisional	98.99
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.99
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.97
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.97
PRK06202	232	hypothetical protein; Provisional	98.92
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.92
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.91
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.91
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.89
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.87
PLN02336	475	phosphoethanolamine N-methyltransferase	98.86
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.85
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.84
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.82
PRK11207	197	tellurite resistance protein TehB; Provisional	98.82
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.8
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.8
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.79
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.78
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.78
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.7
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.68
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.68
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.66
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.66
PLN02490	340	MPBQ/MSBQ methyltransferase	98.64
PRK12335	287	tellurite resistance protein TehB; Provisional	98.63
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.63
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.63
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.62
PRK06922	677	hypothetical protein; Provisional	98.61
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.6
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.58
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.58
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.58
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.57
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.57
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.57
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.56
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.55
PLN02336	475	phosphoethanolamine N-methyltransferase	98.54
KOG3010	261	consensus Methyltransferase [General function pred	98.52
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.51
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.5
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.49
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.48
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.47
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.43
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.41
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.4
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.4
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.39
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.38
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.38
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.37
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.35
PRK14967	223	putative methyltransferase; Provisional	98.35
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.34
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.33
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.33
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.33
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.33
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.31
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.3
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.3
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.3
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.3
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.3
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.29
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.27
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.27
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.26
KOG2940	325	consensus Predicted methyltransferase [General fun	98.25
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.24
PRK14968	188	putative methyltransferase; Provisional	98.2
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.18
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.18
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.16
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.16
PLN03075	296	nicotianamine synthase; Provisional	98.13
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.13
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.12
PHA03412	241	putative methyltransferase; Provisional	98.12
TIGR03438	301	probable methyltransferase. This model represents	98.09
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.08
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.07
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.07
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.06
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.06
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.05
PHA03411	279	putative methyltransferase; Provisional	98.05
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.04
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.04
PRK04266	226	fibrillarin; Provisional	98.01
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.01
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.0
KOG1271	227	consensus Methyltransferases [General function pre	98.0
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.99
TIGR00438	188	rrmJ cell division protein FtsJ.	97.97
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	97.96
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	97.91
COG4123	248	Predicted O-methyltransferase [General function pr	97.88
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.86
PRK00811	283	spermidine synthase; Provisional	97.84
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	97.84
PRK14904	445	16S rRNA methyltransferase B; Provisional	97.83
PRK04148	134	hypothetical protein; Provisional	97.82
PRK14903	431	16S rRNA methyltransferase B; Provisional	97.79
PRK14901	434	16S rRNA methyltransferase B; Provisional	97.79
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	97.79
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	97.79
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	97.78
COG2890	280	HemK Methylase of polypeptide chain release factor	97.77
KOG4300	252	consensus Predicted methyltransferase [General fun	97.74
PRK14902	444	16S rRNA methyltransferase B; Provisional	97.73
PTZ00146	293	fibrillarin; Provisional	97.7
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	97.69
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	97.68
PRK01581	374	speE spermidine synthase; Validated	97.68
PRK13256	226	thiopurine S-methyltransferase; Reviewed	97.66
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.62
PRK07402	196	precorrin-6B methylase; Provisional	97.54
PRK03612	521	spermidine synthase; Provisional	97.51
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	97.51
PRK04457	262	spermidine synthase; Provisional	97.5
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.48
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.47
PLN02366	308	spermidine synthase	97.46
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.45
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	97.44
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.37
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.19
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.12
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	97.09
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.05
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	97.02
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	97.01
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	96.96
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	96.85
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	96.81
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	96.8
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	96.78
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	96.75
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	96.71
KOG2904	328	consensus Predicted methyltransferase [General fun	96.69
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	96.65
PLN02672	1082	methionine S-methyltransferase	96.56
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	96.56
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	96.56
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	96.43
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	96.43
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	96.38
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.36
PF13679	141	Methyltransf_32: Methyltransferase domain	96.34
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	96.33
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.25
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	96.17
KOG2361	264	consensus Predicted methyltransferase [General fun	96.15
COG1041	347	Predicted DNA modification methylase [DNA replicat	96.05
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	96.03
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	95.99
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	95.97
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	95.92
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	95.89
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	95.85
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	95.81
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	95.79
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	95.62
PLN02823	336	spermine synthase	95.52
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	95.5
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	95.45
COG2265	432	TrmA SAM-dependent methyltransferases related to t	95.35
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	95.22
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	95.21
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	95.2
PLN02476	278	O-methyltransferase	95.2
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	95.07
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	94.88
KOG1331	293	consensus Predicted methyltransferase [General fun	94.82
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	94.81
PLN02232	160	ubiquinone biosynthesis methyltransferase	94.77
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	94.73
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	94.68
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	94.1
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	94.07
COG4122	219	Predicted O-methyltransferase [General function pr	93.71
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	93.08
KOG2899	288	consensus Predicted methyltransferase [General fun	93.08
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	92.79
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	92.02
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	91.9
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	91.6
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	91.39
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	91.19
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	90.9
PLN02589	247	caffeoyl-CoA O-methyltransferase	90.36
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	90.2
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	90.14
KOG2352	482	consensus Predicted spermine/spermidine synthase [	89.62
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	88.67
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	88.14
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	88.04
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	88.02
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	87.48
PLN02668	386	indole-3-acetate carboxyl methyltransferase	87.2
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	86.89
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	86.33
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	86.09
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	84.31
PRK10742	250	putative methyltransferase; Provisional	84.0
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	83.83
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	81.31
KOG3201	201	consensus Uncharacterized conserved protein [Funct	80.91
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	80.79
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	80.49

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=100.00  E-value=6.9e-71  Score=541.62  Aligned_cols=193  Identities=69%  Similarity=1.310  Sum_probs=189.4

Q ss_pred             CccccccchhhhcC--CcccchhhccCCCCCCCccccccCCCCCCCCCCCCCCCCceeeecccCCchhhhhhhhcCceee
Q 038698           91 DYTPCQEQDRAMKF--PRENMTYRERHCPPEDEKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQF  168 (283)
Q Consensus        91 ~y~pc~d~~~~~~~--~~~~~~~~eRhCp~~~~~~~Clv~~P~~Y~~P~~wP~sr~~~W~~n~p~~~L~~~k~~q~w~~~  168 (283)
                      |||||+|+.+++++  ++++++|||||||+.+++++||||+|+||+.|||||+|||+|||+||||++|+++|+.||||++
T Consensus         1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~   80 (506)
T PF03141_consen    1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV   80 (506)
T ss_pred             CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence            79999999999999  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCeeeeCCCCCCCCCchhHHHHHHHhhCCC--CCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH
Q 038698          169 QGNVFKFPGGGTMFPQGADAYIDELASVIPI--KDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE  246 (283)
Q Consensus       169 ~~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~--~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e  246 (283)
                      +||+|+||||||+|++||++|||+|.++++.  .+|.+|++||||||+|+||++|++++|++|++++.|.+++|+|+|+|
T Consensus        81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale  160 (506)
T PF03141_consen   81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE  160 (506)
T ss_pred             cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence            9999999999999999999999999999998  77889999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEeccccCCCCCCCceeeeeecccccccccC
Q 038698          247 RGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN  283 (283)
Q Consensus       247 rg~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~W~~~  283 (283)
                      ||+|+++++++++|||||+++||||||++|+|+|+++
T Consensus       161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~  197 (506)
T PF03141_consen  161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPN  197 (506)
T ss_pred             cCcchhhhhhccccccCCccchhhhhcccccccchhc
Confidence            9999999999999999999999999999999999974

; GO: 0008168 methyltransferase activity

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.30  E-value=5.7e-12  Score=94.52  Aligned_cols=71  Identities=28%  Similarity=0.348  Sum_probs=56.4

Q ss_pred             eecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC--CeEEEeccccCCCCCCCceeeeeeccccccc
Q 038698          208 LDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV--PAVIGVLGTIHLPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       208 LDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~--~a~~~v~da~rLPFpd~SFDlV~cs~~Li~W  280 (283)
                      ||+|||+|.++..|+++  ...++.+.|.++++++.++++..  ...+..++.+.|||++++||+|+|..++-.+
T Consensus         1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred             CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec
Confidence            89999999999999998  23467889999999999988743  2347778999999999999999999998444

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.29  E-value=6.4e-12  Score=115.44  Aligned_cols=90  Identities=27%  Similarity=0.300  Sum_probs=72.4

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCC-----eEEEeccccCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVP-----AVIGVLGTIHL  261 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~-----a~~~v~da~rL  261 (283)
                      ..+-+.+.+.+....|  .+|||||||||-++..|++..- ...+.+.|+++.|+..|++|-..     ..+.++++++|
T Consensus        37 ~~Wr~~~i~~~~~~~g--~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L  113 (238)
T COG2226          37 RLWRRALISLLGIKPG--DKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL  113 (238)
T ss_pred             HHHHHHHHHhhCCCCC--CEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC
Confidence            3456666666665444  7999999999999999998643 45788999999999999987332     45677899999


Q ss_pred             CCCCCceeeeeecccccc
Q 038698          262 PYPSRAFDMAQCSRCLIP  279 (283)
Q Consensus       262 PFpd~SFDlV~cs~~Li~  279 (283)
                      ||+|+|||+|.++-.|-+
T Consensus       114 Pf~D~sFD~vt~~fglrn  131 (238)
T COG2226         114 PFPDNSFDAVTISFGLRN  131 (238)
T ss_pred             CCCCCccCEEEeeehhhc
Confidence            999999999999988743

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.26  E-value=1.1e-11  Score=111.54  Aligned_cols=87  Identities=21%  Similarity=0.345  Sum_probs=68.5

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCcee
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFD  269 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFD  269 (283)
                      .+.|.+.++..  ...+|||+|||+|.++..|.+++.   .+.++|+++++++.|.++.....+..++.+.+||++++||
T Consensus        31 a~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD  105 (251)
T PRK10258         31 ADALLAMLPQR--KFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFD  105 (251)
T ss_pred             HHHHHHhcCcc--CCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEE
Confidence            44566666643  236899999999999999987643   5678899999999998875434455678899999999999


Q ss_pred             eeeeccccccccc
Q 038698          270 MAQCSRCLIPWTS  282 (283)
Q Consensus       270 lV~cs~~Li~W~~  282 (283)
                      +|+|+.++ +|..
T Consensus       106 ~V~s~~~l-~~~~  117 (251)
T PRK10258        106 LAWSNLAV-QWCG  117 (251)
T ss_pred             EEEECchh-hhcC
Confidence            99999887 6753

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.24  E-value=1.1e-11  Score=110.59  Aligned_cols=82  Identities=29%  Similarity=0.404  Sum_probs=68.3

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhh-cCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCC-CCCCCc
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLK-RNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHL-PYPSRA  267 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~-r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rL-PFpd~S  267 (283)
                      .+.|.++++.  |  .+|||+|||.|.+.++|.+ +++.   ..|++++++.+..+.++|++++-..++. .| -|+|+|
T Consensus         4 ~~~I~~~I~p--g--srVLDLGCGdG~LL~~L~~~k~v~---g~GvEid~~~v~~cv~rGv~Viq~Dld~-gL~~f~d~s   75 (193)
T PF07021_consen    4 LQIIAEWIEP--G--SRVLDLGCGDGELLAYLKDEKQVD---GYGVEIDPDNVAACVARGVSVIQGDLDE-GLADFPDQS   75 (193)
T ss_pred             HHHHHHHcCC--C--CEEEecCCCchHHHHHHHHhcCCe---EEEEecCHHHHHHHHHcCCCEEECCHHH-hHhhCCCCC
Confidence            3578888876  5  6899999999999999998 5554   4678899999999999999987776654 45 499999


Q ss_pred             eeeeeecccccc
Q 038698          268 FDMAQCSRCLIP  279 (283)
Q Consensus       268 FDlV~cs~~Li~  279 (283)
                      ||.|+.+++|..
T Consensus        76 FD~VIlsqtLQ~   87 (193)
T PF07021_consen   76 FDYVILSQTLQA   87 (193)
T ss_pred             ccEEehHhHHHh
Confidence            999999999854

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.20  E-value=3e-11  Score=110.08  Aligned_cols=87  Identities=22%  Similarity=0.323  Sum_probs=56.8

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLPYP  264 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLPFp  264 (283)
                      .+.+.+.+....|  .+|||+|||||.++..|+++......+.+.|++++|++.|+++    +. ++.+.+++++.|||+
T Consensus        36 r~~~~~~~~~~~g--~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~  113 (233)
T PF01209_consen   36 RRKLIKLLGLRPG--DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFP  113 (233)
T ss_dssp             -SHHHHHHT--S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-
T ss_pred             HHHHHhccCCCCC--CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCC
Confidence            3345555554444  6999999999999998887633334678999999999999865    23 456778899999999


Q ss_pred             CCceeeeeeccccc
Q 038698          265 SRAFDMAQCSRCLI  278 (283)
Q Consensus       265 d~SFDlV~cs~~Li  278 (283)
                      |++||+|+|+-.|-
T Consensus       114 d~sfD~v~~~fglr  127 (233)
T PF01209_consen  114 DNSFDAVTCSFGLR  127 (233)
T ss_dssp             TT-EEEEEEES-GG
T ss_pred             CCceeEEEHHhhHH
Confidence            99999999998774

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK05785 hypothetical protein; Provisional

Probab=99.17  E-value=4.6e-11  Score=107.77  Aligned_cols=70  Identities=20%  Similarity=0.185  Sum_probs=58.4

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeecccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIP  279 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~  279 (283)
                      .+|||||||||.++..|+++.  ...+.++|++++|++.|.++..   ..+++++.|||++++||+|+|+.+|-+
T Consensus        53 ~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~~---~~~~d~~~lp~~d~sfD~v~~~~~l~~  122 (226)
T PRK05785         53 KKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVADD---KVVGSFEALPFRDKSFDVVMSSFALHA  122 (226)
T ss_pred             CeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhccc---eEEechhhCCCCCCCEEEEEecChhhc
Confidence            589999999999999998873  2367889999999999987631   335688999999999999999998843

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.16  E-value=1.2e-10  Score=107.06  Aligned_cols=86  Identities=20%  Similarity=0.093  Sum_probs=64.8

Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHcC-------C-CeEEEeccccCCC
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALERG-------V-PAVIGVLGTIHLP  262 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~erg-------~-~a~~~v~da~rLP  262 (283)
                      .+.+.+....+  .+|||||||+|.++..|+++ +.. ..+.++|++++|++.|.++.       . ...+..++++.||
T Consensus        64 ~~~~~~~~~~~--~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp  140 (261)
T PLN02233         64 MAVSWSGAKMG--DRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP  140 (261)
T ss_pred             HHHHHhCCCCC--CEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence            34445554333  68999999999999888875 222 25678899999999887552       1 3456677899999


Q ss_pred             CCCCceeeeeeccccccc
Q 038698          263 YPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       263 Fpd~SFDlV~cs~~Li~W  280 (283)
                      |++++||+|+|+.++-++
T Consensus       141 ~~~~sfD~V~~~~~l~~~  158 (261)
T PLN02233        141 FDDCYFDAITMGYGLRNV  158 (261)
T ss_pred             CCCCCEeEEEEecccccC
Confidence            999999999999888544

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.13  E-value=1.9e-10  Score=105.74  Aligned_cols=83  Identities=20%  Similarity=0.263  Sum_probs=63.9

Q ss_pred             HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCC--eeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCce
Q 038698          191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNV--LTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAF  268 (283)
Q Consensus       191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v--~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SF  268 (283)
                      +.|.+.++.   ...+|||+|||+|.++..|++...  ....+.++|+++.+++.|.++.....+.++++..|||++++|
T Consensus        76 ~~l~~~l~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sf  152 (272)
T PRK11088         76 NLLAERLDE---KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSL  152 (272)
T ss_pred             HHHHHhcCC---CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCce
Confidence            344444442   235799999999999999887521  123578899999999999887666667778999999999999


Q ss_pred             eeeeeccc
Q 038698          269 DMAQCSRC  276 (283)
Q Consensus       269 DlV~cs~~  276 (283)
                      |+|++..+
T Consensus       153 D~I~~~~~  160 (272)
T PRK11088        153 DAIIRIYA  160 (272)
T ss_pred             eEEEEecC
Confidence            99998643

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.12  E-value=1.3e-10  Score=103.56  Aligned_cols=89  Identities=16%  Similarity=0.049  Sum_probs=65.7

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCce
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAF  268 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SF  268 (283)
                      +++.+.+.+.... ...+|||||||+|.++..|++.. ....+.++|+++++++.|+++.....+..+++.. ||++++|
T Consensus        30 ~~~~~~~~l~~~~-~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sf  106 (204)
T TIGR03587        30 KLAMFARALNRLP-KIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFF  106 (204)
T ss_pred             HHHHHHHHHHhcC-CCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCE
Confidence            4444444443211 23689999999999999998762 1236789999999999998754334455567666 9999999


Q ss_pred             eeeeeccccccc
Q 038698          269 DMAQCSRCLIPW  280 (283)
Q Consensus       269 DlV~cs~~Li~W  280 (283)
                      |+|+|..+|.++
T Consensus       107 D~V~~~~vL~hl  118 (204)
T TIGR03587       107 DLVLTKGVLIHI  118 (204)
T ss_pred             EEEEECChhhhC
Confidence            999999999765

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.09  E-value=1.9e-10  Score=104.39  Aligned_cols=85  Identities=24%  Similarity=0.342  Sum_probs=66.1

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCcee
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFD  269 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFD  269 (283)
                      ...+.+.++...+  .+|||||||+|.++..|+++.. ...+.++|+++.+++.|+++++.  +..++++.++ ++++||
T Consensus        18 ~~~ll~~l~~~~~--~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~~--~~~~d~~~~~-~~~~fD   91 (255)
T PRK14103         18 FYDLLARVGAERA--RRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGVD--ARTGDVRDWK-PKPDTD   91 (255)
T ss_pred             HHHHHHhCCCCCC--CEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCCc--EEEcChhhCC-CCCCce
Confidence            4566667765444  6899999999999999988732 23578899999999999887654  4456777775 678999


Q ss_pred             eeeecccccccc
Q 038698          270 MAQCSRCLIPWT  281 (283)
Q Consensus       270 lV~cs~~Li~W~  281 (283)
                      +|+|+.++ +|.
T Consensus        92 ~v~~~~~l-~~~  102 (255)
T PRK14103         92 VVVSNAAL-QWV  102 (255)
T ss_pred             EEEEehhh-hhC
Confidence            99999988 664

>PLN02244 tocopherol O-methyltransferase

Probab=99.08  E-value=2.8e-10  Score=108.36  Aligned_cols=92  Identities=16%  Similarity=0.226  Sum_probs=68.6

Q ss_pred             hHHHHHHHhhCCCC---CCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEecc
Q 038698          187 DAYIDELASVIPIK---DGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLG  257 (283)
Q Consensus       187 ~~Yid~I~~~l~~~---~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~d  257 (283)
                      ...++.+.+.+.+.   .....+|||||||+|.++.+|+++.  ...+.++|+++.|++.|.++    +.  .+.+.++|
T Consensus        99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D  176 (340)
T PLN02244         99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVAD  176 (340)
T ss_pred             HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence            34466666666541   1223689999999999999998862  23567889999998877543    44  35677789


Q ss_pred             ccCCCCCCCceeeeeeccccccc
Q 038698          258 TIHLPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       258 a~rLPFpd~SFDlV~cs~~Li~W  280 (283)
                      +..+||++++||+|+|..++.++
T Consensus       177 ~~~~~~~~~~FD~V~s~~~~~h~  199 (340)
T PLN02244        177 ALNQPFEDGQFDLVWSMESGEHM  199 (340)
T ss_pred             cccCCCCCCCccEEEECCchhcc
Confidence            99999999999999999888655

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.06  E-value=6.5e-10  Score=102.30  Aligned_cols=88  Identities=18%  Similarity=0.251  Sum_probs=68.5

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC---CeEEEeccccCCCCCC
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV---PAVIGVLGTIHLPYPS  265 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~---~a~~~v~da~rLPFpd  265 (283)
                      ..+.+.+.+.+..+  .+|||||||+|..+.+|++..  ...+.++|+++.+++.|.++..   ...+...+...+||++
T Consensus        40 ~~~~~l~~l~l~~~--~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~  115 (263)
T PTZ00098         40 ATTKILSDIELNEN--SKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPE  115 (263)
T ss_pred             HHHHHHHhCCCCCC--CEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCC
Confidence            35667777776544  689999999999998887642  2357788999999999887632   3456667888899999


Q ss_pred             Cceeeeeeccccccc
Q 038698          266 RAFDMAQCSRCLIPW  280 (283)
Q Consensus       266 ~SFDlV~cs~~Li~W  280 (283)
                      ++||+|++..++.++
T Consensus       116 ~~FD~V~s~~~l~h~  130 (263)
T PTZ00098        116 NTFDMIYSRDAILHL  130 (263)
T ss_pred             CCeEEEEEhhhHHhC
Confidence            999999998877555

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.00  E-value=1e-09  Score=95.83  Aligned_cols=76  Identities=24%  Similarity=0.302  Sum_probs=60.8

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC-CeEEEeccccCCCCCCCceeeeeecccccccc
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV-PAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~-~a~~~v~da~rLPFpd~SFDlV~cs~~Li~W~  281 (283)
                      ..+|||+|||+|.++..|++... ...+.+.|+++++++.+.++.. ...+...+...+|+++++||+|+|+.++ +|.
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l-~~~  111 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLAL-QWC  111 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhh-hhc
Confidence            36899999999999999988743 2346788999999988877643 3345567888999999999999999887 554

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK08317 hypothetical protein; Provisional

Probab=98.99  E-value=1.9e-09  Score=93.82  Aligned_cols=92  Identities=25%  Similarity=0.328  Sum_probs=70.5

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLP  262 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLP  262 (283)
                      ..|.+.+.+.+.+..+  .+|||+|||+|.++..++++......+.++|+++.+++.|+++    +....+...+...+|
T Consensus         5 ~~~~~~~~~~~~~~~~--~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~   82 (241)
T PRK08317          5 RRYRARTFELLAVQPG--DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP   82 (241)
T ss_pred             HHHHHHHHHHcCCCCC--CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC
Confidence            4567778788877544  6899999999999999887531223567889999998888765    223456667888899


Q ss_pred             CCCCceeeeeeccccccc
Q 038698          263 YPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       263 Fpd~SFDlV~cs~~Li~W  280 (283)
                      +++++||+|++..++-.+
T Consensus        83 ~~~~~~D~v~~~~~~~~~  100 (241)
T PRK08317         83 FPDGSFDAVRSDRVLQHL  100 (241)
T ss_pred             CCCCCceEEEEechhhcc
Confidence            999999999999888443

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.99  E-value=1.3e-09  Score=96.62  Aligned_cols=89  Identities=19%  Similarity=0.311  Sum_probs=66.4

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHL  261 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rL  261 (283)
                      ..+.+.+.+.+....+  .+|||+|||+|.++..|++..-....+.++|+++.+++.|.++    +. ...+..+++..+
T Consensus        31 ~~~~~~~l~~l~~~~~--~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~  108 (231)
T TIGR02752        31 KKWRKDTMKRMNVQAG--TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL  108 (231)
T ss_pred             HHHHHHHHHhcCCCCC--CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC
Confidence            3445667777776545  6899999999999999887521223567889999998877654    33 244556688899


Q ss_pred             CCCCCceeeeeecccc
Q 038698          262 PYPSRAFDMAQCSRCL  277 (283)
Q Consensus       262 PFpd~SFDlV~cs~~L  277 (283)
                      ||++++||+|++..++
T Consensus       109 ~~~~~~fD~V~~~~~l  124 (231)
T TIGR02752       109 PFDDNSFDYVTIGFGL  124 (231)
T ss_pred             CCCCCCccEEEEeccc
Confidence            9999999999998766

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.97  E-value=4.7e-10  Score=87.74  Aligned_cols=70  Identities=23%  Similarity=0.282  Sum_probs=55.1

Q ss_pred             EeecCCCccHHHHHHhhcC--CeeEeeccccChHHHHHHHHHcC----CCeEEEeccccCCCCCCCceeeeeeccc
Q 038698          207 ALDTGCGVASWGAYLLKRN--VLTMSFAPRDNHEAQVQFALERG----VPAVIGVLGTIHLPYPSRAFDMAQCSRC  276 (283)
Q Consensus       207 VLDVGCGtGsfaa~L~~r~--v~~~sla~~D~s~a~vq~A~erg----~~a~~~v~da~rLPFpd~SFDlV~cs~~  276 (283)
                      |||+|||+|..+..|.+..  .....+.++|++++++..|.++.    .++.+.++|...||+.+++||+|+|+.+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~   76 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGL   76 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCC
Confidence            7999999999999988763  11246789999999999988663    6778888999999999999999999655

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.97  E-value=1.3e-09  Score=98.47  Aligned_cols=88  Identities=20%  Similarity=0.289  Sum_probs=66.1

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCce
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAF  268 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SF  268 (283)
                      ..+.|.+.++...+  .+|||||||+|.++..|+++. ....+.++|+++.+++.|.++.....+...+...++ ++++|
T Consensus        19 ~~~~ll~~~~~~~~--~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~f   94 (258)
T PRK01683         19 PARDLLARVPLENP--RYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQAL   94 (258)
T ss_pred             HHHHHHhhCCCcCC--CEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCc
Confidence            34555566665444  689999999999999998763 223577889999999999877544556666776665 56799


Q ss_pred             eeeeecccccccc
Q 038698          269 DMAQCSRCLIPWT  281 (283)
Q Consensus       269 DlV~cs~~Li~W~  281 (283)
                      |+|+|+.++ +|.
T Consensus        95 D~v~~~~~l-~~~  106 (258)
T PRK01683         95 DLIFANASL-QWL  106 (258)
T ss_pred             cEEEEccCh-hhC
Confidence            999999988 665

>PRK06202 hypothetical protein; Provisional

Probab=98.92  E-value=3.9e-09  Score=94.38  Aligned_cols=74  Identities=20%  Similarity=0.218  Sum_probs=57.4

Q ss_pred             ccEEeecCCCccHHHHHHhhc----CCeeEeeccccChHHHHHHHHHcC--CCeEEEeccccCCCCCCCceeeeeecccc
Q 038698          204 VRTALDTGCGVASWGAYLLKR----NVLTMSFAPRDNHEAQVQFALERG--VPAVIGVLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r----~v~~~sla~~D~s~a~vq~A~erg--~~a~~~v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                      ..+|||+|||+|.++..|++.    +. ...+.++|+++++++.|.++.  .+..+.+.++..+|+++++||+|+|+.+|
T Consensus        61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~l  139 (232)
T PRK06202         61 PLTLLDIGCGGGDLAIDLARWARRDGL-RLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFL  139 (232)
T ss_pred             CcEEEEeccCCCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCee
Confidence            468999999999988887652    22 236789999999999998762  12334455677889999999999999988


Q ss_pred             c
Q 038698          278 I  278 (283)
Q Consensus       278 i  278 (283)
                      -
T Consensus       140 h  140 (232)
T PRK06202        140 H  140 (232)
T ss_pred             e
Confidence            3

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.92  E-value=2.3e-09  Score=89.68  Aligned_cols=72  Identities=24%  Similarity=0.281  Sum_probs=57.8

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCC--CCCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLP--YPSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLP--Fpd~SFDlV~cs~~L  277 (283)
                      .+|||+|||+|.++..|+++-.....+.++|+++++++.|.++    +.+ ..+.+.++..++  |+ +.||+|++..++
T Consensus         5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l   83 (152)
T PF13847_consen    5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGVL   83 (152)
T ss_dssp             SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEESTG
T ss_pred             CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCch
Confidence            6899999999999999995311233578999999999998763    554 667778888888  88 999999999887

...

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.91  E-value=2e-09  Score=88.53  Aligned_cols=85  Identities=26%  Similarity=0.423  Sum_probs=61.7

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSR  266 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~  266 (283)
                      ..+.+.|.++++.. ....+|||||||+|.++..|.+++.   .+.++|+++.++..     ........+....+++++
T Consensus         7 ~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~   77 (161)
T PF13489_consen    7 RAYADLLERLLPRL-KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDG   77 (161)
T ss_dssp             HCHHHHHHHHHTCT-TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSS
T ss_pred             HHHHHHHHHHhccc-CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh-----hhhhhhhhhhhhhhcccc
Confidence            34566666666521 1236999999999999999988755   57788999888766     222333334557788999


Q ss_pred             ceeeeeecccccccc
Q 038698          267 AFDMAQCSRCLIPWT  281 (283)
Q Consensus       267 SFDlV~cs~~Li~W~  281 (283)
                      +||+|+|..+| .|.
T Consensus        78 ~fD~i~~~~~l-~~~   91 (161)
T PF13489_consen   78 SFDLIICNDVL-EHL   91 (161)
T ss_dssp             SEEEEEEESSG-GGS
T ss_pred             chhhHhhHHHH-hhc
Confidence            99999999888 443

...

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.91  E-value=9.5e-10  Score=101.26  Aligned_cols=120  Identities=22%  Similarity=0.249  Sum_probs=78.9

Q ss_pred             ecccCCchhhhh-hhhcCceeecCCeeeeCCCCCCCCCchhHHHHHHHhhCCC---CCCCccEEeecCCCccHHHHHHhh
Q 038698          148 YANVPHKSLTVE-KAVQNWVQFQGNVFKFPGGGTMFPQGADAYIDELASVIPI---KDGSVRTALDTGCGVASWGAYLLK  223 (283)
Q Consensus       148 ~~n~p~~~L~~~-k~~q~w~~~~~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~---~~g~~r~VLDVGCGtGsfaa~L~~  223 (283)
                      ..|+++..++.. +..++|-..+|+.-.-    ..+.   ...++.|.+.+..   ..|  .+|||||||.|.++.-|++
T Consensus         9 ~~~id~~e~~~F~~la~~wwd~~g~f~~L----H~~N---~~rl~~i~~~~~~~~~l~g--~~vLDvGCGgG~Lse~mAr   79 (243)
T COG2227           9 TQNVDYKELDKFEALASRWWDPEGEFKPL----HKIN---PLRLDYIREVARLRFDLPG--LRVLDVGCGGGILSEPLAR   79 (243)
T ss_pred             cccCCHHHHHHHHHHHhhhcCCCCceeee----eeec---cchhhhhhhhhhcccCCCC--CeEEEecCCccHhhHHHHH
Confidence            557777766533 3456776655441110    0011   1122233344331   123  5899999999999999999


Q ss_pred             cCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCCCceeeeeecccccc
Q 038698          224 RNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIP  279 (283)
Q Consensus       224 r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~  279 (283)
                      .+.   .+.++|+++..|+.|+.+    |+.+.+....++.|-...++||+|+|..+|.|
T Consensus        80 ~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH  136 (243)
T COG2227          80 LGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH  136 (243)
T ss_pred             CCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence            873   567899999999888643    55544555667788777799999999999865

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.89  E-value=4.4e-09  Score=91.74  Aligned_cols=80  Identities=25%  Similarity=0.375  Sum_probs=58.8

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccC-C-CCCCCc
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIH-L-PYPSRA  267 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~r-L-PFpd~S  267 (283)
                      ++.|.+.++.  +  .+|||||||+|.++..|+++..  ..+.++|+++++++.|.++++....  +++.. + ++++++
T Consensus         4 ~~~i~~~i~~--~--~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~~~~~~~--~d~~~~l~~~~~~s   75 (194)
T TIGR02081         4 LESILNLIPP--G--SRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVARGVNVIQ--GDLDEGLEAFPDKS   75 (194)
T ss_pred             HHHHHHhcCC--C--CEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHcCCeEEE--EEhhhcccccCCCC
Confidence            3455566642  3  4899999999999988876421  2346789999999988877765443  35433 5 589999


Q ss_pred             eeeeeecccc
Q 038698          268 FDMAQCSRCL  277 (283)
Q Consensus       268 FDlV~cs~~L  277 (283)
                      ||+|+|+.++
T Consensus        76 fD~Vi~~~~l   85 (194)
T TIGR02081        76 FDYVILSQTL   85 (194)
T ss_pred             cCEEEEhhHh
Confidence            9999999987

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.87  E-value=3.2e-09  Score=96.49  Aligned_cols=71  Identities=17%  Similarity=0.070  Sum_probs=56.8

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCC-CCCCCceeeeeeccc
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHL-PYPSRAFDMAQCSRC  276 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rL-PFpd~SFDlV~cs~~  276 (283)
                      ..+|||+|||+|.++..|++++.   .+.++|+++.+++.|.++    +.  .+.+..++++.+ ++++++||+|+|+.+
T Consensus        45 ~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v  121 (255)
T PRK11036         45 PLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV  121 (255)
T ss_pred             CCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence            36999999999999999999853   467889999999888754    33  234555677777 478899999999998


Q ss_pred             c
Q 038698          277 L  277 (283)
Q Consensus       277 L  277 (283)
                      +
T Consensus       122 l  122 (255)
T PRK11036        122 L  122 (255)
T ss_pred             H
Confidence            7

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.86  E-value=7.4e-09  Score=101.83  Aligned_cols=86  Identities=24%  Similarity=0.442  Sum_probs=65.5

Q ss_pred             HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc--CC--CeEEEeccccCCCCCCC
Q 038698          191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER--GV--PAVIGVLGTIHLPYPSR  266 (283)
Q Consensus       191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er--g~--~a~~~v~da~rLPFpd~  266 (283)
                      +.+.+.+.+..+  .+|||||||+|.++..|+++.  ...+.++|++++++..|.++  +.  ...+..++...+||+++
T Consensus       256 e~l~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~  331 (475)
T PLN02336        256 KEFVDKLDLKPG--QKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDN  331 (475)
T ss_pred             HHHHHhcCCCCC--CEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCC
Confidence            345555554333  689999999999998888752  23577899999999888764  22  34566778889999999


Q ss_pred             ceeeeeeccccccc
Q 038698          267 AFDMAQCSRCLIPW  280 (283)
Q Consensus       267 SFDlV~cs~~Li~W  280 (283)
                      +||+|+|..++.++
T Consensus       332 ~fD~I~s~~~l~h~  345 (475)
T PLN02336        332 SFDVIYSRDTILHI  345 (475)
T ss_pred             CEEEEEECCccccc
Confidence            99999999888554

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.85  E-value=7.6e-09  Score=95.60  Aligned_cols=104  Identities=16%  Similarity=0.205  Sum_probs=71.3

Q ss_pred             CCCCCCCchhHHHHHHHhhCC----CC-CCCccEEeecCCCcc----HHHHHHhhcCC----eeEeeccccChHHHHHHH
Q 038698          178 GGTMFPQGADAYIDELASVIP----IK-DGSVRTALDTGCGVA----SWGAYLLKRNV----LTMSFAPRDNHEAQVQFA  244 (283)
Q Consensus       178 ggt~F~~ga~~Yid~I~~~l~----~~-~g~~r~VLDVGCGtG----sfaa~L~~r~v----~~~sla~~D~s~a~vq~A  244 (283)
                      +-|.|.+...++-.....++|    .. .+...+|||+|||||    +++..|++...    ....+.+.|+++.+++.|
T Consensus        69 ~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~A  148 (264)
T smart00138       69 NETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKA  148 (264)
T ss_pred             CCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHH
Confidence            357777777666332222333    11 123468999999999    46666666422    135788999999999998


Q ss_pred             HHc--------CC------------------------CeEEEeccccCCCCCCCceeeeeecccccccc
Q 038698          245 LER--------GV------------------------PAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       245 ~er--------g~------------------------~a~~~v~da~rLPFpd~SFDlV~cs~~Li~W~  281 (283)
                      ++.        ++                        .+.+.+.+...+|+++++||+|+|..+|+.+.
T Consensus       149 r~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~  217 (264)
T smart00138      149 RAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD  217 (264)
T ss_pred             HcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC
Confidence            753        11                        23466778888899999999999999987763

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.84  E-value=7.9e-09  Score=90.99  Aligned_cols=88  Identities=30%  Similarity=0.362  Sum_probs=62.2

Q ss_pred             HHHHHHHhhCCCC-CCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccC
Q 038698          188 AYIDELASVIPIK-DGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIH  260 (283)
Q Consensus       188 ~Yid~I~~~l~~~-~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~r  260 (283)
                      ...+.+.++++.. .....+|||||||+|.++..|++++.   .+.++|+++.+++.|.++    +.  ...+..++   
T Consensus        47 ~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---  120 (230)
T PRK07580         47 RMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGD---  120 (230)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---
Confidence            3344555555430 11236899999999999999988754   367889999999988765    22  23344334   


Q ss_pred             CCCCCCceeeeeecccccccc
Q 038698          261 LPYPSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       261 LPFpd~SFDlV~cs~~Li~W~  281 (283)
                      +++.+++||+|+|..++.+|.
T Consensus       121 ~~~~~~~fD~v~~~~~l~~~~  141 (230)
T PRK07580        121 LESLLGRFDTVVCLDVLIHYP  141 (230)
T ss_pred             chhccCCcCEEEEcchhhcCC
Confidence            677789999999999987654

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.82  E-value=1.1e-08  Score=97.26  Aligned_cols=86  Identities=23%  Similarity=0.220  Sum_probs=62.2

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHH--HHc----CCCeEEEeccccCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFA--LER----GVPAVIGVLGTIHLPY  263 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A--~er----g~~a~~~v~da~rLPF  263 (283)
                      .+.|...++...|  ++|||||||+|.++.+|++.+..  .+.++|.++.++..+  .++    ..++.+..++++.+|+
T Consensus       111 ~~~l~~~l~~l~g--~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~  186 (322)
T PRK15068        111 WDRVLPHLSPLKG--RTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA  186 (322)
T ss_pred             HHHHHHhhCCCCC--CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC
Confidence            4456666654344  69999999999999999987543  356788888776432  222    1235566678899999


Q ss_pred             CCCceeeeeeccccccc
Q 038698          264 PSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       264 pd~SFDlV~cs~~Li~W  280 (283)
                       +++||+|+|..++-++
T Consensus       187 -~~~FD~V~s~~vl~H~  202 (322)
T PRK15068        187 -LKAFDTVFSMGVLYHR  202 (322)
T ss_pred             -cCCcCEEEECChhhcc
Confidence             8999999999888543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.82  E-value=1.2e-08  Score=89.75  Aligned_cols=80  Identities=16%  Similarity=0.268  Sum_probs=59.6

Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCCCC
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYPSR  266 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFpd~  266 (283)
                      .+.+.++...+  .+|||+|||+|.++.+|++++.   .+.++|+++.+++.|+++    ++. ..+.+++...++++ +
T Consensus        21 ~l~~~l~~~~~--~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~   94 (197)
T PRK11207         21 EVLEAVKVVKP--GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-G   94 (197)
T ss_pred             HHHHhcccCCC--CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-C
Confidence            45556654333  5899999999999999999853   567789999888876532    443 34555677777875 6


Q ss_pred             ceeeeeecccc
Q 038698          267 AFDMAQCSRCL  277 (283)
Q Consensus       267 SFDlV~cs~~L  277 (283)
                      +||+|+|+.++
T Consensus        95 ~fD~I~~~~~~  105 (197)
T PRK11207         95 EYDFILSTVVL  105 (197)
T ss_pred             CcCEEEEecch
Confidence            79999999887

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.80  E-value=6.6e-09  Score=95.34  Aligned_cols=87  Identities=20%  Similarity=0.349  Sum_probs=68.8

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCC--eEEEeccccCCCCCCCc
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVP--AVIGVLGTIHLPYPSRA  267 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~--a~~~v~da~rLPFpd~S  267 (283)
                      .+.-.+++.+.++..+-|||||||+|.-+..|.+.+.   -..|+|+|+.|+..|.++-+.  .++..|+ +-|||..++
T Consensus        37 ~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG-~GlpfrpGt  112 (270)
T KOG1541|consen   37 AERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMG-EGLPFRPGT  112 (270)
T ss_pred             HHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecC-CCCCCCCCc
Confidence            3344566666554568999999999999998888763   357899999999999976543  4455555 899999999


Q ss_pred             eeeeeecccccccc
Q 038698          268 FDMAQCSRCLIPWT  281 (283)
Q Consensus       268 FDlV~cs~~Li~W~  281 (283)
                      ||-|++-.++ +|.
T Consensus       113 FDg~ISISAv-QWL  125 (270)
T KOG1541|consen  113 FDGVISISAV-QWL  125 (270)
T ss_pred             cceEEEeeee-eee
Confidence            9999999988 885

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.80  E-value=9.7e-09  Score=90.92  Aligned_cols=88  Identities=28%  Similarity=0.358  Sum_probs=64.6

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIH  260 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~r  260 (283)
                      +...+.+.+.++.......+|||+|||+|.++..|++++.   .+.++|+++++++.|+++    +.  ...+.+.+...
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~  115 (219)
T TIGR02021        39 AAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS  115 (219)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence            4445566666652112247899999999999999988743   567889999999888765    22  34566677777


Q ss_pred             CCCCCCceeeeeeccccccc
Q 038698          261 LPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       261 LPFpd~SFDlV~cs~~Li~W  280 (283)
                      ++   ++||+|++..++.++
T Consensus       116 ~~---~~fD~ii~~~~l~~~  132 (219)
T TIGR02021       116 LC---GEFDIVVCMDVLIHY  132 (219)
T ss_pred             CC---CCcCEEEEhhHHHhC
Confidence            76   899999999887655

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.79  E-value=1.3e-08  Score=96.97  Aligned_cols=86  Identities=20%  Similarity=0.195  Sum_probs=60.4

Q ss_pred             HHHHHhhCCCC-CCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC----------CeEEEeccc
Q 038698          190 IDELASVIPIK-DGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV----------PAVIGVLGT  258 (283)
Q Consensus       190 id~I~~~l~~~-~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~----------~a~~~v~da  258 (283)
                      ++.+.+++... +....+|||||||+|.++..|++++.   .+.++|+++.+++.|+++..          ...+.+.+.
T Consensus       130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl  206 (315)
T PLN02585        130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL  206 (315)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence            45555555432 11226899999999999999998753   56788999999998876521          223444454


Q ss_pred             cCCCCCCCceeeeeecccccccc
Q 038698          259 IHLPYPSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       259 ~rLPFpd~SFDlV~cs~~Li~W~  281 (283)
                      ..   .+++||+|+|..++.++.
T Consensus       207 ~~---l~~~fD~Vv~~~vL~H~p  226 (315)
T PLN02585        207 ES---LSGKYDTVTCLDVLIHYP  226 (315)
T ss_pred             hh---cCCCcCEEEEcCEEEecC
Confidence            33   368999999999987653

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.78  E-value=5.8e-09  Score=99.52  Aligned_cols=73  Identities=18%  Similarity=0.145  Sum_probs=59.3

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCCCCCCCceeeeeeccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHLPYPSRAFDMAQCSRCLI  278 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rLPFpd~SFDlV~cs~~Li  278 (283)
                      .+|||||||+|.++..|++.+.   .+.++|.++++++.|+++    +.  ...+..++++.||+++++||+|+|..+|-
T Consensus       133 ~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe  209 (322)
T PLN02396        133 LKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE  209 (322)
T ss_pred             CEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence            5899999999999999987643   567889999999988754    11  34466678899999999999999999885


Q ss_pred             cc
Q 038698          279 PW  280 (283)
Q Consensus       279 ~W  280 (283)
                      +.
T Consensus       210 Hv  211 (322)
T PLN02396        210 HV  211 (322)
T ss_pred             hc
Confidence            44

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.78  E-value=1.4e-08  Score=89.34  Aligned_cols=83  Identities=14%  Similarity=0.231  Sum_probs=60.4

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCCeEEEeccccCCCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVPAVIGVLGTIHLPYPS  265 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~a~~~v~da~rLPFpd  265 (283)
                      ...|.+.+....+  .+|||+|||+|.++.+|++++.   .+.++|+++.+++.+.+    .+++....+++...++++ 
T Consensus        19 ~~~l~~~~~~~~~--~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-   92 (195)
T TIGR00477        19 HSAVREAVKTVAP--CKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-   92 (195)
T ss_pred             hHHHHHHhccCCC--CcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-
Confidence            3355566654333  5899999999999999998753   56788999988876643    355545555566667775 


Q ss_pred             Cceeeeeeccccc
Q 038698          266 RAFDMAQCSRCLI  278 (283)
Q Consensus       266 ~SFDlV~cs~~Li  278 (283)
                      ++||+|+|+.++.
T Consensus        93 ~~fD~I~~~~~~~  105 (195)
T TIGR00477        93 EDYDFIFSTVVFM  105 (195)
T ss_pred             CCCCEEEEecccc
Confidence            6899999998773

Part of a tellurite-reducing operon tehA and tehB

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.70  E-value=8e-08  Score=85.13  Aligned_cols=88  Identities=11%  Similarity=0.012  Sum_probs=61.7

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCC
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHL  261 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rL  261 (283)
                      ...+.+.+.+....+  .+|||||||+|++++.|++.--....+.++|+++++++.|.++    +..  ..+..++....
T Consensus        59 ~~~~~~~~~l~~~~~--~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~  136 (205)
T PRK13944         59 HMVAMMCELIEPRPG--MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG  136 (205)
T ss_pred             HHHHHHHHhcCCCCC--CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence            345666677766544  6899999999999988877421112467788888888777643    442  44555676665


Q ss_pred             CCCCCceeeeeecccc
Q 038698          262 PYPSRAFDMAQCSRCL  277 (283)
Q Consensus       262 PFpd~SFDlV~cs~~L  277 (283)
                      +..+++||+|++..++
T Consensus       137 ~~~~~~fD~Ii~~~~~  152 (205)
T PRK13944        137 LEKHAPFDAIIVTAAA  152 (205)
T ss_pred             CccCCCccEEEEccCc
Confidence            5567899999998765

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.68  E-value=6.2e-08  Score=75.84  Aligned_cols=67  Identities=21%  Similarity=0.293  Sum_probs=50.5

Q ss_pred             cEEeecCCCccHHHHHHhh--cCCeeEeeccccChHHHHHHHHHcC------CCeEEEeccc-cCCCCCCCceeeeeecc
Q 038698          205 RTALDTGCGVASWGAYLLK--RNVLTMSFAPRDNHEAQVQFALERG------VPAVIGVLGT-IHLPYPSRAFDMAQCSR  275 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~--r~v~~~sla~~D~s~a~vq~A~erg------~~a~~~v~da-~rLPFpd~SFDlV~cs~  275 (283)
                      .+|||||||+|.++..|++  .+.   .+.++|+++++++.|+++-      ....+...+. ....+ .+.||+|++..
T Consensus         3 ~~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~   78 (112)
T PF12847_consen    3 GRVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSG   78 (112)
T ss_dssp             CEEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECS
T ss_pred             CEEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECC
Confidence            5899999999999999998  443   4678899999988887542      2455666676 33333 34599999998

...

>TIGR00452 methyltransferase, putative

Probab=98.68  E-value=6.5e-08  Score=92.14  Aligned_cols=86  Identities=23%  Similarity=0.204  Sum_probs=60.4

Q ss_pred             HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH--Hc--C--CCeEEEeccccCCCCC
Q 038698          191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL--ER--G--VPAVIGVLGTIHLPYP  264 (283)
Q Consensus       191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~--er--g--~~a~~~v~da~rLPFp  264 (283)
                      +.+...+....|  ++|||||||+|.++..|+..+..  .+.++|.++.++..+.  ++  +  ..+.+..++.+.+|+.
T Consensus       111 ~~~l~~l~~~~g--~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~  186 (314)
T TIGR00452       111 DRVLPHLSPLKG--RTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL  186 (314)
T ss_pred             HHHHHhcCCCCC--CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC
Confidence            345555554344  69999999999999988887542  3577888887765432  12  1  2344556678889875


Q ss_pred             CCceeeeeecccccccc
Q 038698          265 SRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       265 d~SFDlV~cs~~Li~W~  281 (283)
                       ++||+|+|+.+|.++.
T Consensus       187 -~~FD~V~s~gvL~H~~  202 (314)
T TIGR00452       187 -YAFDTVFSMGVLYHRK  202 (314)
T ss_pred             -CCcCEEEEcchhhccC
Confidence             4899999999996653

Known examples to date are restricted to the proteobacteria.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.66  E-value=4.2e-08  Score=91.52  Aligned_cols=96  Identities=24%  Similarity=0.379  Sum_probs=61.1

Q ss_pred             eCCCCCCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc----CC
Q 038698          175 FPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER----GV  249 (283)
Q Consensus       175 Fpgggt~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er----g~  249 (283)
                      |+.+.......-...++.|.+.+.+++|  .+|||||||-|.++.+++++ ++   .+.++.+|++|.+.|.++    |+
T Consensus        36 ~~~~~~~Le~AQ~~k~~~~~~~~~l~~G--~~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl  110 (273)
T PF02353_consen   36 FDEGDDTLEEAQERKLDLLCEKLGLKPG--DRVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGL  110 (273)
T ss_dssp             -SSTT--HHHHHHHHHHHHHTTTT--TT---EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTS
T ss_pred             cCCchhhHHHHHHHHHHHHHHHhCCCCC--CEEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCC
Confidence            3444444433335568888899988877  69999999999999999998 55   456778899998887643    65


Q ss_pred             C--eEEEeccccCCCCCCCceeeeeeccccc
Q 038698          250 P--AVIGVLGTIHLPYPSRAFDMAQCSRCLI  278 (283)
Q Consensus       250 ~--a~~~v~da~rLPFpd~SFDlV~cs~~Li  278 (283)
                      .  +.+...|...++.   +||.|++-.++-
T Consensus       111 ~~~v~v~~~D~~~~~~---~fD~IvSi~~~E  138 (273)
T PF02353_consen  111 EDRVEVRLQDYRDLPG---KFDRIVSIEMFE  138 (273)
T ss_dssp             SSTEEEEES-GGG------S-SEEEEESEGG
T ss_pred             CCceEEEEeeccccCC---CCCEEEEEechh
Confidence            3  4455567666655   999999987764

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.66  E-value=2.2e-08  Score=91.72  Aligned_cols=88  Identities=20%  Similarity=0.266  Sum_probs=71.3

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCcee
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFD  269 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFD  269 (283)
                      ...|...+++.  ..++|.|+|||+|..+++|.+|=.. ..|.|+|.|.+|+..|++|.+.+.+..+|.+.. =|+..+|
T Consensus        19 a~dLla~Vp~~--~~~~v~DLGCGpGnsTelL~~RwP~-A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w-~p~~~~d   94 (257)
T COG4106          19 ARDLLARVPLE--RPRRVVDLGCGPGNSTELLARRWPD-AVITGIDSSPAMLAKAAQRLPDATFEEADLRTW-KPEQPTD   94 (257)
T ss_pred             HHHHHhhCCcc--ccceeeecCCCCCHHHHHHHHhCCC-CeEeeccCCHHHHHHHHHhCCCCceecccHhhc-CCCCccc
Confidence            33566677763  4589999999999999999998433 357899999999999999988888877776554 2678999


Q ss_pred             eeeeccccccccc
Q 038698          270 MAQCSRCLIPWTS  282 (283)
Q Consensus       270 lV~cs~~Li~W~~  282 (283)
                      +++++.+| +|..
T Consensus        95 llfaNAvl-qWlp  106 (257)
T COG4106          95 LLFANAVL-QWLP  106 (257)
T ss_pred             hhhhhhhh-hhcc
Confidence            99999999 8853

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.64  E-value=8.1e-08  Score=92.51  Aligned_cols=76  Identities=17%  Similarity=0.137  Sum_probs=59.0

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC--CCeEEEeccccCCCCCCCceeeeeecccccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG--VPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg--~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~W~  281 (283)
                      .+|||||||+|.++..|+++. ....+.++|.++++++.|.++.  ....+..++.+.+||++++||+|+++.++..|.
T Consensus       115 ~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~  192 (340)
T PLN02490        115 LKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP  192 (340)
T ss_pred             CEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence            689999999999988877642 1235678899999998887652  123455668899999999999999998886553

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.63  E-value=6.9e-08  Score=89.66  Aligned_cols=69  Identities=19%  Similarity=0.268  Sum_probs=53.9

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCCeEEEeccccCCCCCCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVPAVIGVLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~a~~~v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                      .+|||+|||+|.++.+|++++.   .+.++|.++.+++.+.+    .++...+...+....++ +++||+|+|..++
T Consensus       122 ~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl  194 (287)
T PRK12335        122 GKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVL  194 (287)
T ss_pred             CCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchh
Confidence            4899999999999999998753   56788999988887653    35555555556666666 7899999999876

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.63  E-value=1.5e-07  Score=82.42  Aligned_cols=89  Identities=19%  Similarity=0.190  Sum_probs=64.4

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC------CCeEEEeccccCCC
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG------VPAVIGVLGTIHLP  262 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg------~~a~~~v~da~rLP  262 (283)
                      +...+.+.+....+  .+|||+|||+|.++..|++.......+.++|+++.+++.|.++-      .+..+...+...++
T Consensus        39 ~~~~~~~~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  116 (239)
T PRK00216         39 WRRKTIKWLGVRPG--DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP  116 (239)
T ss_pred             HHHHHHHHhCCCCC--CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC
Confidence            34455555554333  68999999999999988876421235678899998888877651      23456667888889


Q ss_pred             CCCCceeeeeecccccc
Q 038698          263 YPSRAFDMAQCSRCLIP  279 (283)
Q Consensus       263 Fpd~SFDlV~cs~~Li~  279 (283)
                      +++++||+|+++.++-.
T Consensus       117 ~~~~~~D~I~~~~~l~~  133 (239)
T PRK00216        117 FPDNSFDAVTIAFGLRN  133 (239)
T ss_pred             CCCCCccEEEEeccccc
Confidence            99999999999887743

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.63  E-value=8.4e-08  Score=87.60  Aligned_cols=73  Identities=18%  Similarity=0.064  Sum_probs=55.2

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCCCCCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                      .+|||||||+|..+..+++.-.....+.++|.++++++.|+++    +. ...+..++.+.+||++++||+|++..++
T Consensus        79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~  156 (272)
T PRK11873         79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVI  156 (272)
T ss_pred             CEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcc
Confidence            6999999999987766555311112467789999998888764    44 3445567889999999999999998776

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.62  E-value=6.1e-09  Score=96.09  Aligned_cols=84  Identities=26%  Similarity=0.311  Sum_probs=64.2

Q ss_pred             HHHhhCCC-CCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEecccc-CCC-CCCCce
Q 038698          192 ELASVIPI-KDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTI-HLP-YPSRAF  268 (283)
Q Consensus       192 ~I~~~l~~-~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~-rLP-Fpd~SF  268 (283)
                      .+.+||.. ..|..+++||+|||||.++..|..+   +-.+.|+|+|++|+..|.++|+--.+.++++. -|+ ..+..|
T Consensus       113 ~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~  189 (287)
T COG4976         113 LLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERF  189 (287)
T ss_pred             HHHHHHHhccCCccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcc
Confidence            45556553 2355899999999999999999886   23578999999999999999875445555544 333 567899


Q ss_pred             eeeeeccccc
Q 038698          269 DMAQCSRCLI  278 (283)
Q Consensus       269 DlV~cs~~Li  278 (283)
                      |+|.+..||.
T Consensus       190 DLi~AaDVl~  199 (287)
T COG4976         190 DLIVAADVLP  199 (287)
T ss_pred             cchhhhhHHH
Confidence            9999998873

>PRK06922 hypothetical protein; Provisional

Probab=98.61  E-value=9e-08  Score=98.98  Aligned_cols=75  Identities=16%  Similarity=0.097  Sum_probs=58.9

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCC--CCCCceeeeeeccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLP--YPSRAFDMAQCSRCLI  278 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLP--Fpd~SFDlV~cs~~Li  278 (283)
                      .+|||||||+|.++..|+++. ....+.++|+++.+++.|.++    +.+..+..++...||  |++++||+|+++.++-
T Consensus       420 ~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH  498 (677)
T PRK06922        420 DTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILH  498 (677)
T ss_pred             CEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence            589999999999988887753 234678899999999888764    333445556888898  9999999999998774


Q ss_pred             cc
Q 038698          279 PW  280 (283)
Q Consensus       279 ~W  280 (283)
                      .|
T Consensus       499 ~L  500 (677)
T PRK06922        499 EL  500 (677)
T ss_pred             hh
Confidence            44

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.60  E-value=1.9e-07  Score=80.99  Aligned_cols=88  Identities=16%  Similarity=0.163  Sum_probs=65.0

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC---CeEEEeccccCCCCC
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV---PAVIGVLGTIHLPYP  264 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~---~a~~~v~da~rLPFp  264 (283)
                      .+.+.+.+.+....  ..+|||+|||+|.++..+++.......+.++|+++.++..+.++..   ...+...++..+|++
T Consensus        26 ~~~~~~~~~~~~~~--~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  103 (223)
T TIGR01934        26 LWRRRAVKLIGVFK--GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFE  103 (223)
T ss_pred             HHHHHHHHHhccCC--CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCC
Confidence            34555666665433  3689999999999999988764322357788999988888876531   344556688889999


Q ss_pred             CCceeeeeecccc
Q 038698          265 SRAFDMAQCSRCL  277 (283)
Q Consensus       265 d~SFDlV~cs~~L  277 (283)
                      +++||+|+++..+
T Consensus       104 ~~~~D~i~~~~~~  116 (223)
T TIGR01934       104 DNSFDAVTIAFGL  116 (223)
T ss_pred             CCcEEEEEEeeee
Confidence            9999999998766

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.58  E-value=2.3e-07  Score=82.82  Aligned_cols=89  Identities=11%  Similarity=0.038  Sum_probs=64.0

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHL  261 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rL  261 (283)
                      ......+.+.+.+..|  .+|||||||+|++++.|++.--....+.++|+++++++.|+++    +. +..+..+++...
T Consensus        62 p~~~~~~~~~l~~~~g--~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~  139 (212)
T PRK13942         62 IHMVAIMCELLDLKEG--MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG  139 (212)
T ss_pred             HHHHHHHHHHcCCCCc--CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC
Confidence            3345566677776555  6999999999999988887521122567788888888877653    44 345666777777


Q ss_pred             CCCCCceeeeeecccc
Q 038698          262 PYPSRAFDMAQCSRCL  277 (283)
Q Consensus       262 PFpd~SFDlV~cs~~L  277 (283)
                      +++++.||+|++....
T Consensus       140 ~~~~~~fD~I~~~~~~  155 (212)
T PRK13942        140 YEENAPYDRIYVTAAG  155 (212)
T ss_pred             CCcCCCcCEEEECCCc
Confidence            7788999999987654

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.58  E-value=1.5e-07  Score=89.73  Aligned_cols=86  Identities=24%  Similarity=0.290  Sum_probs=58.2

Q ss_pred             HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCe-eEeeccccChHHHHHHHHHc-CCC--eEEEeccccCCCCCCC
Q 038698          191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVL-TMSFAPRDNHEAQVQFALER-GVP--AVIGVLGTIHLPYPSR  266 (283)
Q Consensus       191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~-~~sla~~D~s~a~vq~A~er-g~~--a~~~v~da~rLPFpd~  266 (283)
                      ++|...++...|  ++|||||||.|+++-+|+.++.. ++.+.+....-.|-+++.+- |..  ....-++.+.||. .+
T Consensus       105 ~rl~p~l~~L~g--k~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~  181 (315)
T PF08003_consen  105 DRLLPHLPDLKG--KRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LG  181 (315)
T ss_pred             HHHHhhhCCcCC--CEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cC
Confidence            455666653345  79999999999999999998764 34444444444443343332 332  2222257899999 89


Q ss_pred             ceeeeeecccccc
Q 038698          267 AFDMAQCSRCLIP  279 (283)
Q Consensus       267 SFDlV~cs~~Li~  279 (283)
                      +||+|+|..+|-|
T Consensus       182 ~FDtVF~MGVLYH  194 (315)
T PF08003_consen  182 AFDTVFSMGVLYH  194 (315)
T ss_pred             CcCEEEEeeehhc
Confidence            9999999999843

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.58  E-value=1.1e-07  Score=89.76  Aligned_cols=98  Identities=21%  Similarity=0.278  Sum_probs=70.2

Q ss_pred             eCCCCCCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHH----cCC
Q 038698          175 FPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALE----RGV  249 (283)
Q Consensus       175 Fpgggt~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~e----rg~  249 (283)
                      |+.+..+....-.+.++.+.+.+.+++|  .+|||||||-|.++.+++++ +++   +.|+++|++|...|.+    +|.
T Consensus        46 f~~~~~tL~eAQ~~k~~~~~~kl~L~~G--~~lLDiGCGWG~l~~~aA~~y~v~---V~GvTlS~~Q~~~~~~r~~~~gl  120 (283)
T COG2230          46 FEDPDMTLEEAQRAKLDLILEKLGLKPG--MTLLDIGCGWGGLAIYAAEEYGVT---VVGVTLSEEQLAYAEKRIAARGL  120 (283)
T ss_pred             eCCCCCChHHHHHHHHHHHHHhcCCCCC--CEEEEeCCChhHHHHHHHHHcCCE---EEEeeCCHHHHHHHHHHHHHcCC
Confidence            4554444433335568999999999888  79999999999999999997 554   5678999999877655    365


Q ss_pred             CeEEEeccccCCCCCCCceeeeeeccccc
Q 038698          250 PAVIGVLGTIHLPYPSRAFDMAQCSRCLI  278 (283)
Q Consensus       250 ~a~~~v~da~rLPFpd~SFDlV~cs~~Li  278 (283)
                      ...+.+ -.+..+..++.||-|++..++-
T Consensus       121 ~~~v~v-~l~d~rd~~e~fDrIvSvgmfE  148 (283)
T COG2230         121 EDNVEV-RLQDYRDFEEPFDRIVSVGMFE  148 (283)
T ss_pred             CcccEE-EeccccccccccceeeehhhHH
Confidence            522221 2345555666699999987763

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.57  E-value=1.7e-07  Score=80.21  Aligned_cols=80  Identities=14%  Similarity=0.092  Sum_probs=61.4

Q ss_pred             HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---CCeEEEeccccCCCCCCCc
Q 038698          191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---VPAVIGVLGTIHLPYPSRA  267 (283)
Q Consensus       191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---~~a~~~v~da~rLPFpd~S  267 (283)
                      +.|.+.+....+  .+|||+|||+|.++..|++++.   .+.++|+++.+++.++++-   ....+...|+..+++++..
T Consensus         3 ~~i~~~~~~~~~--~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~   77 (169)
T smart00650        3 DKIVRAANLRPG--DTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQ   77 (169)
T ss_pred             HHHHHhcCCCCc--CEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccC
Confidence            456666665444  5899999999999999999842   4677888888888887652   1345666789999999989


Q ss_pred             eeeeeecc
Q 038698          268 FDMAQCSR  275 (283)
Q Consensus       268 FDlV~cs~  275 (283)
                      ||.|+++-
T Consensus        78 ~d~vi~n~   85 (169)
T smart00650       78 PYKVVGNL   85 (169)
T ss_pred             CCEEEECC
Confidence            99998863

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.57  E-value=1.5e-07  Score=91.67  Aligned_cols=84  Identities=25%  Similarity=0.367  Sum_probs=63.0

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc--CCCeEEEeccccCCCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER--GVPAVIGVLGTIHLPYP  264 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er--g~~a~~~v~da~rLPFp  264 (283)
                      ...++.|.+.+.+..|  .+|||||||+|.++.+|+++.  ...+.++|++++|++.|.++  +....+...+...+   
T Consensus       153 ~~k~~~l~~~l~l~~g--~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---  225 (383)
T PRK11705        153 EAKLDLICRKLQLKPG--MRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---  225 (383)
T ss_pred             HHHHHHHHHHhCCCCC--CEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---
Confidence            4456777777777555  689999999999999998752  22567889999999999876  33444544565554   


Q ss_pred             CCceeeeeecccc
Q 038698          265 SRAFDMAQCSRCL  277 (283)
Q Consensus       265 d~SFDlV~cs~~L  277 (283)
                      +++||+|++..++
T Consensus       226 ~~~fD~Ivs~~~~  238 (383)
T PRK11705        226 NGQFDRIVSVGMF  238 (383)
T ss_pred             CCCCCEEEEeCch
Confidence            5899999998776

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.57  E-value=2.4e-07  Score=83.45  Aligned_cols=87  Identities=24%  Similarity=0.293  Sum_probs=57.4

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc--CCC-eEEEeccccCCCCC
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER--GVP-AVIGVLGTIHLPYP  264 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er--g~~-a~~~v~da~rLPFp  264 (283)
                      .|...|.-.||.  +..+.+||+|||.|.|+..|+.+.   -.+...|+++..++.|++|  +.+ +.+.+++..+ ..|
T Consensus        30 K~~~~l~aaLp~--~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~-~~P  103 (201)
T PF05401_consen   30 KYRATLLAALPR--RRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADVPE-FWP  103 (201)
T ss_dssp             HHHHHHHHHHTT--SSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----
T ss_pred             HHHHHHHHhcCc--cccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCC-CCC
Confidence            344344444664  466899999999999999999982   3566789999999999987  433 4566666544 368


Q ss_pred             CCceeeeeeccccccc
Q 038698          265 SRAFDMAQCSRCLIPW  280 (283)
Q Consensus       265 d~SFDlV~cs~~Li~W  280 (283)
                      ++.||+|+++.++--+
T Consensus       104 ~~~FDLIV~SEVlYYL  119 (201)
T PF05401_consen  104 EGRFDLIVLSEVLYYL  119 (201)
T ss_dssp             SS-EEEEEEES-GGGS
T ss_pred             CCCeeEEEEehHhHcC
Confidence            9999999999988433

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR00740 methyltransferase, putative

Probab=98.56  E-value=1.2e-07  Score=85.09  Aligned_cols=71  Identities=15%  Similarity=0.123  Sum_probs=54.9

Q ss_pred             cEEeecCCCccHHHHHHhhcC-CeeEeeccccChHHHHHHHHHc----C--CCeEEEeccccCCCCCCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKRN-VLTMSFAPRDNHEAQVQFALER----G--VPAVIGVLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~-v~~~sla~~D~s~a~vq~A~er----g--~~a~~~v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                      .+|||||||+|.++..|+++. -....+.++|+++.+++.|+++    +  ....+..++...+|+++  +|+|+|+.++
T Consensus        55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~d~v~~~~~l  132 (239)
T TIGR00740        55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKN--ASMVILNFTL  132 (239)
T ss_pred             CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCC--CCEEeeecch
Confidence            589999999999998888752 1234577889999999888764    2  23456677888898874  8999998887

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.55  E-value=2.5e-07  Score=82.16  Aligned_cols=87  Identities=15%  Similarity=0.103  Sum_probs=60.7

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCC
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPY  263 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPF  263 (283)
                      .+..+.+.+.+..+  .+|||||||+|++++.|++..-....+.++|+++++++.|+++    +.. +.+...+....+.
T Consensus        65 ~~~~~~~~l~~~~~--~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~  142 (215)
T TIGR00080        65 MVAMMTELLELKPG--MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE  142 (215)
T ss_pred             HHHHHHHHhCCCCc--CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc
Confidence            34566677776555  6899999999999999888632212356778888888877643    443 4455567665555


Q ss_pred             CCCceeeeeecccc
Q 038698          264 PSRAFDMAQCSRCL  277 (283)
Q Consensus       264 pd~SFDlV~cs~~L  277 (283)
                      ..+.||+|++..+.
T Consensus       143 ~~~~fD~Ii~~~~~  156 (215)
T TIGR00080       143 PLAPYDRIYVTAAG  156 (215)
T ss_pred             ccCCCCEEEEcCCc
Confidence            56799999987653

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.54  E-value=1.6e-07  Score=92.33  Aligned_cols=84  Identities=17%  Similarity=0.210  Sum_probs=62.6

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC--C-CeEEEeccc--cCCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG--V-PAVIGVLGT--IHLPYP  264 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg--~-~a~~~v~da--~rLPFp  264 (283)
                      .+.+.+.++...+  .+|||||||+|.++..|+++..   .+.++|.++.+++.+.+..  . ...+...++  ..+||+
T Consensus        26 ~~~il~~l~~~~~--~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~  100 (475)
T PLN02336         26 RPEILSLLPPYEG--KSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNIS  100 (475)
T ss_pred             hhHHHhhcCccCC--CEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCC
Confidence            4566667765333  5899999999999999998742   4678899999998876542  1 234544554  468999


Q ss_pred             CCceeeeeeccccc
Q 038698          265 SRAFDMAQCSRCLI  278 (283)
Q Consensus       265 d~SFDlV~cs~~Li  278 (283)
                      +++||+|+|+.++-
T Consensus       101 ~~~fD~I~~~~~l~  114 (475)
T PLN02336        101 DGSVDLIFSNWLLM  114 (475)
T ss_pred             CCCEEEEehhhhHH
Confidence            99999999998873

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.52  E-value=1e-07  Score=88.20  Aligned_cols=88  Identities=16%  Similarity=0.186  Sum_probs=56.6

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeE----EEeccccCCCCC-
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAV----IGVLGTIHLPYP-  264 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~----~~v~da~rLPFp-  264 (283)
                      ++.+.+.....++ .+.++|||||+| .+++..+.-  --.+.+.|++++|+++|.+.-....    ....+.+-.++- 
T Consensus        21 tdw~~~ia~~~~~-h~~a~DvG~G~G-qa~~~iae~--~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g   96 (261)
T KOG3010|consen   21 TDWFKKIASRTEG-HRLAWDVGTGNG-QAARGIAEH--YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG   96 (261)
T ss_pred             HHHHHHHHhhCCC-cceEEEeccCCC-cchHHHHHh--hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccC
Confidence            4444444443334 368999999999 555544421  1134567999999999986421111    222234455665 


Q ss_pred             -CCceeeeeeccccccccc
Q 038698          265 -SRAFDMAQCSRCLIPWTS  282 (283)
Q Consensus       265 -d~SFDlV~cs~~Li~W~~  282 (283)
                       ++|.|||+|.+|+ ||-.
T Consensus        97 ~e~SVDlI~~Aqa~-HWFd  114 (261)
T KOG3010|consen   97 GEESVDLITAAQAV-HWFD  114 (261)
T ss_pred             CCcceeeehhhhhH-Hhhc
Confidence             9999999999999 9964

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.51  E-value=1.4e-07  Score=83.44  Aligned_cols=75  Identities=23%  Similarity=0.291  Sum_probs=57.7

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccc-cCCC--CCCCceeeeeeccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGT-IHLP--YPSRAFDMAQCSRC  276 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da-~rLP--Fpd~SFDlV~cs~~  276 (283)
                      .+|||+|||+|.++..|+++.. ...+.++|+++.+++.|.++    +. +..+..+++ +.++  +++++||+|++..+
T Consensus        42 ~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~  120 (202)
T PRK00121         42 PIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP  120 (202)
T ss_pred             CeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence            6899999999999999887532 23577889999998887643    33 345666777 7888  89999999998765


Q ss_pred             ccccc
Q 038698          277 LIPWT  281 (283)
Q Consensus       277 Li~W~  281 (283)
                      . +|.
T Consensus       121 ~-p~~  124 (202)
T PRK00121        121 D-PWP  124 (202)
T ss_pred             C-CCC
Confidence            4 664

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.50  E-value=8.3e-08  Score=85.80  Aligned_cols=80  Identities=14%  Similarity=0.057  Sum_probs=52.2

Q ss_pred             HHHHHhhCC-CCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCC-------
Q 038698          190 IDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHL-------  261 (283)
Q Consensus       190 id~I~~~l~-~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rL-------  261 (283)
                      +.+|.+.+. +..|  .+|||+|||+|.++..|+++......+.++|+++ +     ..-..+.+..+|+..+       
T Consensus        39 l~~~~~~~~~~~~~--~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~~~~~v~~i~~D~~~~~~~~~i~  110 (209)
T PRK11188         39 LDEIQQSDKLFKPG--MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----DPIVGVDFLQGDFRDELVLKALL  110 (209)
T ss_pred             hHHHHHHhccCCCC--CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----cCCCCcEEEecCCCChHHHHHHH
Confidence            555555555 3344  5899999999999999988632222455666655 1     1111234555676665       


Q ss_pred             -CCCCCceeeeeecccc
Q 038698          262 -PYPSRAFDMAQCSRCL  277 (283)
Q Consensus       262 -PFpd~SFDlV~cs~~L  277 (283)
                       ++.+++||+|+|..+.
T Consensus       111 ~~~~~~~~D~V~S~~~~  127 (209)
T PRK11188        111 ERVGDSKVQVVMSDMAP  127 (209)
T ss_pred             HHhCCCCCCEEecCCCC
Confidence             3788999999998765

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.49  E-value=2.4e-07  Score=84.25  Aligned_cols=71  Identities=13%  Similarity=0.097  Sum_probs=53.7

Q ss_pred             cEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCCCCCCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                      .+|||||||+|.++..|++. .-....+.++|+++.|++.|+++    +.  ...+...++..+|+++  +|+|+|+.++
T Consensus        58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~--~D~vv~~~~l  135 (247)
T PRK15451         58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIEN--ASMVVLNFTL  135 (247)
T ss_pred             CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCC--CCEEehhhHH
Confidence            58999999999998887763 11233577889999999988765    23  3456667788888864  8999998876

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.48  E-value=1.8e-08  Score=78.04  Aligned_cols=71  Identities=25%  Similarity=0.299  Sum_probs=38.8

Q ss_pred             eecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCC-C-CCCCceeeeeecccccc
Q 038698          208 LDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHL-P-YPSRAFDMAQCSRCLIP  279 (283)
Q Consensus       208 LDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rL-P-Fpd~SFDlV~cs~~Li~  279 (283)
                      ||||||+|.++..|+++. ....+.+.|+++.+++.|+++    +. ...........+ . ...++||+|++..++-+
T Consensus         1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~   78 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH   78 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred             CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence            899999999999998874 345677888888887655443    21 112222222222 1 12269999999999843

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.47  E-value=1.1e-06  Score=78.34  Aligned_cols=85  Identities=15%  Similarity=0.198  Sum_probs=60.1

Q ss_pred             hhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccC
Q 038698          186 ADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIH  260 (283)
Q Consensus       186 a~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~r  260 (283)
                      ....++.+.+.++.   ...+|||+|||+|.++..|++... ...+.++|+++.+++.|.+.    +.. ..+..++...
T Consensus        73 ~~~l~~~~l~~~~~---~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~  148 (251)
T TIGR03534        73 TEELVEAALERLKK---GPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE  148 (251)
T ss_pred             hHHHHHHHHHhccc---CCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc
Confidence            35566666666653   225899999999999999988632 22567889999888877543    443 4455556544


Q ss_pred             CCCCCCceeeeeecc
Q 038698          261 LPYPSRAFDMAQCSR  275 (283)
Q Consensus       261 LPFpd~SFDlV~cs~  275 (283)
                       ++++++||+|+|+-
T Consensus       149 -~~~~~~fD~Vi~np  162 (251)
T TIGR03534       149 -PLPGGKFDLIVSNP  162 (251)
T ss_pred             -cCcCCceeEEEECC
Confidence             67889999999953

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.43  E-value=6.4e-07  Score=83.83  Aligned_cols=91  Identities=15%  Similarity=0.118  Sum_probs=64.4

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCe-----eEeeccccChHHHHHHHHHc----CCC----eEEEe
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVL-----TMSFAPRDNHEAQVQFALER----GVP----AVIGV  255 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~-----~~sla~~D~s~a~vq~A~er----g~~----a~~~v  255 (283)
                      +-|.....+...+|  .++|||+||||-.+-.+++.--.     ...+...|+++.|+..+.+|    +..    ..+..
T Consensus        88 WKd~~v~~L~p~~~--m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~  165 (296)
T KOG1540|consen   88 WKDMFVSKLGPGKG--MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVE  165 (296)
T ss_pred             HHHHhhhccCCCCC--CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEe
Confidence            44455555655445  78999999999888777764111     12345567778877666544    332    34666


Q ss_pred             ccccCCCCCCCceeeeeecccccccc
Q 038698          256 LGTIHLPYPSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       256 ~da~rLPFpd~SFDlV~cs~~Li~W~  281 (283)
                      +|++.|||+|++||+.+.+--+-+|+
T Consensus       166 ~dAE~LpFdd~s~D~yTiafGIRN~t  191 (296)
T KOG1540|consen  166 GDAEDLPFDDDSFDAYTIAFGIRNVT  191 (296)
T ss_pred             CCcccCCCCCCcceeEEEecceecCC
Confidence            79999999999999999988777775

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.41  E-value=1.1e-06  Score=79.08  Aligned_cols=71  Identities=18%  Similarity=0.083  Sum_probs=53.3

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH-HcCC----------------CeEEEeccccCCCCC-CC
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL-ERGV----------------PAVIGVLGTIHLPYP-SR  266 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~-erg~----------------~a~~~v~da~rLPFp-d~  266 (283)
                      .+|||+|||.|..+.+|++++.   ++.++|+++..++.|. +.++                .+.+.++|...++.. ..
T Consensus        36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~  112 (213)
T TIGR03840        36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG  112 (213)
T ss_pred             CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence            5899999999999999999854   4567899998887653 3333                244566777777653 46


Q ss_pred             ceeeeeeccccc
Q 038698          267 AFDMAQCSRCLI  278 (283)
Q Consensus       267 SFDlV~cs~~Li  278 (283)
                      .||.|+-..++.
T Consensus       113 ~fD~i~D~~~~~  124 (213)
T TIGR03840       113 PVDAVYDRAALI  124 (213)
T ss_pred             CcCEEEechhhc
Confidence            799999877764

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.40  E-value=1.8e-06  Score=68.02  Aligned_cols=85  Identities=14%  Similarity=0.005  Sum_probs=57.6

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccC-CCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIH-LPY  263 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~r-LPF  263 (283)
                      .+.+.+.+....+  .+|||+|||+|.++..++++... ..+.++|.++.+++.|.+.    +.. ..+...+... +++
T Consensus         8 ~~~~~~~~~~~~~--~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   84 (124)
T TIGR02469         8 RALTLSKLRLRPG--DVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED   84 (124)
T ss_pred             HHHHHHHcCCCCC--CEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh
Confidence            3345555555333  58999999999999999886322 3567889998888776532    332 3444445443 555


Q ss_pred             CCCceeeeeecccc
Q 038698          264 PSRAFDMAQCSRCL  277 (283)
Q Consensus       264 pd~SFDlV~cs~~L  277 (283)
                      ...+||.|++..+.
T Consensus        85 ~~~~~D~v~~~~~~   98 (124)
T TIGR02469        85 SLPEPDRVFIGGSG   98 (124)
T ss_pred             hcCCCCEEEECCcc
Confidence            56799999997654

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.40  E-value=4.3e-07  Score=80.12  Aligned_cols=71  Identities=23%  Similarity=0.288  Sum_probs=52.8

Q ss_pred             EEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCCCCCCCceeeeeeccccc
Q 038698          206 TALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLPYPSRAFDMAQCSRCLI  278 (283)
Q Consensus       206 ~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLPFpd~SFDlV~cs~~Li  278 (283)
                      +|||||||+|.++..|++... ...+.++|+++++++.|.++    |..  ..+...+..+.|++ ++||+|++..++-
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~   78 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIH   78 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHH
Confidence            699999999999998887531 13567889999998887754    332  34555677677886 4899999988763

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.39  E-value=1.1e-06  Score=78.63  Aligned_cols=80  Identities=21%  Similarity=0.384  Sum_probs=54.1

Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHH----HHHHcCCCeEEEeccccCCCCCCCc
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQ----FALERGVPAVIGVLGTIHLPYPSRA  267 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq----~A~erg~~a~~~v~da~rLPFpd~S  267 (283)
                      .+.+.++...+  .++||+|||.|..+.+|++++.   ++..+|.++..++    .|.+.+++....+.|.....++ +.
T Consensus        21 ~v~~a~~~~~~--g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~   94 (192)
T PF03848_consen   21 EVLEAVPLLKP--GKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EE   94 (192)
T ss_dssp             HHHHHCTTS-S--SEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TT
T ss_pred             HHHHHHhhcCC--CcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CC
Confidence            45566664322  4899999999999999999865   3455677765554    3455688877777787777775 68


Q ss_pred             eeeeeecccc
Q 038698          268 FDMAQCSRCL  277 (283)
Q Consensus       268 FDlV~cs~~L  277 (283)
                      ||+|++.-++
T Consensus        95 yD~I~st~v~  104 (192)
T PF03848_consen   95 YDFIVSTVVF  104 (192)
T ss_dssp             EEEEEEESSG
T ss_pred             cCEEEEEEEe
Confidence            9999987555

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.38  E-value=6.4e-07  Score=79.30  Aligned_cols=69  Identities=17%  Similarity=0.184  Sum_probs=51.9

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC-eEEEeccccCCCCCCCceeeeeecc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP-AVIGVLGTIHLPYPSRAFDMAQCSR  275 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~-a~~~v~da~rLPFpd~SFDlV~cs~  275 (283)
                      .+|||+|||+|.++..|+.+.. ...+.++|.++.+++.|.+    .+.. ..+..+++..++. +++||+|+|..
T Consensus        47 ~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~  120 (187)
T PRK00107         47 ERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA  120 (187)
T ss_pred             CeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence            6899999999998888776321 2356788999888877654    2543 4566667888887 88999999964

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.38  E-value=1.5e-06  Score=82.59  Aligned_cols=102  Identities=23%  Similarity=0.292  Sum_probs=71.0

Q ss_pred             CCeeeeCCCCCCCCCch-hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-
Q 038698          170 GNVFKFPGGGTMFPQGA-DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-  247 (283)
Q Consensus       170 ~~~~~Fpgggt~F~~ga-~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-  247 (283)
                      |.-++|-.-...|.++. |.=.+.|.+.++...+.  +|||+|||-|.++..|+++.. ...++..|++...++.|++. 
T Consensus       126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl  202 (300)
T COG2813         126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNL  202 (300)
T ss_pred             cCceEEEeCCCCCcCCCcChHHHHHHHhCCccCCC--cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhH
Confidence            44455555555777655 44477888888865443  899999999999999999865 33677789888888887643 


Q ss_pred             ---CCCeEEEeccccCCCCCCCceeeeeecc
Q 038698          248 ---GVPAVIGVLGTIHLPYPSRAFDMAQCSR  275 (283)
Q Consensus       248 ---g~~a~~~v~da~rLPFpd~SFDlV~cs~  275 (283)
                         ++.......+.--.+-.+ .||+|+|+-
T Consensus       203 ~~N~~~~~~v~~s~~~~~v~~-kfd~IisNP  232 (300)
T COG2813         203 AANGVENTEVWASNLYEPVEG-KFDLIISNP  232 (300)
T ss_pred             HHcCCCccEEEEecccccccc-cccEEEeCC
Confidence               444322223444556666 999999974

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.37  E-value=1e-06  Score=82.26  Aligned_cols=69  Identities=17%  Similarity=0.104  Sum_probs=48.7

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCCCceeeeeecc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPSRAFDMAQCSR  275 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd~SFDlV~cs~  275 (283)
                      .+|||+|||+|.++..+++.+.  ..+.++|+++.+++.|++.    ++...+.+.....+++.++.||+|+|+.
T Consensus       161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~  233 (288)
T TIGR00406       161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANI  233 (288)
T ss_pred             CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEec
Confidence            6899999999999888877643  2567889999888887654    3332222222224566788999999964

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.35  E-value=9.6e-07  Score=81.75  Aligned_cols=81  Identities=12%  Similarity=0.083  Sum_probs=61.9

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC--CCeEEEeccccCCCCCCC
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG--VPAVIGVLGTIHLPYPSR  266 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg--~~a~~~v~da~rLPFpd~  266 (283)
                      .++.|.+.+....+  .+|||||||+|.++..|+++..   .+.++|+++++++.+.++-  ....+..+|+..+++++-
T Consensus        30 i~~~i~~~l~~~~~--~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~  104 (272)
T PRK00274         30 ILDKIVDAAGPQPG--DNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSEL  104 (272)
T ss_pred             HHHHHHHhcCCCCc--CeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHc
Confidence            46677777766444  6899999999999999999853   5678899999988887642  245566678888888764


Q ss_pred             ceeeeeec
Q 038698          267 AFDMAQCS  274 (283)
Q Consensus       267 SFDlV~cs  274 (283)
                      .+|.|+++
T Consensus       105 ~~~~vv~N  112 (272)
T PRK00274        105 QPLKVVAN  112 (272)
T ss_pred             CcceEEEe
Confidence            46888876

>PRK14967 putative methyltransferase; Provisional

Probab=98.35  E-value=2.9e-06  Score=75.76  Aligned_cols=68  Identities=19%  Similarity=0.109  Sum_probs=50.0

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCCCceeeeeecc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPSRAFDMAQCSR  275 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd~SFDlV~cs~  275 (283)
                      .+|||+|||+|.++..|+..+.  ..+.++|+++.+++.|+++    +....+...+... ++++++||+|+|+.
T Consensus        38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~np  109 (223)
T PRK14967         38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNP  109 (223)
T ss_pred             CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECC
Confidence            5899999999999998887643  2567788888888766542    4444455555543 46788999999973

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.34  E-value=1.2e-06  Score=76.82  Aligned_cols=69  Identities=17%  Similarity=0.208  Sum_probs=49.4

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC-eEEEeccccCCCCCCCceeeeeecc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP-AVIGVLGTIHLPYPSRAFDMAQCSR  275 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~-a~~~v~da~rLPFpd~SFDlV~cs~  275 (283)
                      .+|||+|||+|.++..|+.... ...+.++|.++.+++.+.+    .+.. ..+..++++.++ .+++||+|+|..
T Consensus        44 ~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~  117 (181)
T TIGR00138        44 KKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA  117 (181)
T ss_pred             CeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh
Confidence            6899999999999888775422 2346778888887766542    3553 445566777775 468999999864

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.33  E-value=1.7e-06  Score=74.48  Aligned_cols=69  Identities=14%  Similarity=0.087  Sum_probs=51.1

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCCCceeeeeeccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPSRAFDMAQCSRCLI  278 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd~SFDlV~cs~~Li  278 (283)
                      .+|||+|||+|.++..|.+++.   .+.++|+++++++.|.++    +....+...+....+  .++||+|+++...+
T Consensus        21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~   93 (179)
T TIGR00537        21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYL   93 (179)
T ss_pred             CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCC
Confidence            5799999999999999998754   567889999988877653    344444445654433  46999999986554

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.33  E-value=1.7e-06  Score=79.48  Aligned_cols=83  Identities=17%  Similarity=0.171  Sum_probs=63.2

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---CCeEEEeccccCCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---VPAVIGVLGTIHLPY  263 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---~~a~~~v~da~rLPF  263 (283)
                      ...++.|.+.+....+  .+|||||||+|.++..|+++..   .+.++|+++.+++.+.++-   ....+..+|+..+++
T Consensus        15 ~~~~~~iv~~~~~~~~--~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~   89 (258)
T PRK14896         15 DRVVDRIVEYAEDTDG--DPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDL   89 (258)
T ss_pred             HHHHHHHHHhcCCCCc--CeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCc
Confidence            4467788888776544  6899999999999999999743   4677889999888887652   134566678888887


Q ss_pred             CCCceeeeeeccc
Q 038698          264 PSRAFDMAQCSRC  276 (283)
Q Consensus       264 pd~SFDlV~cs~~  276 (283)
                      ++  ||.|+++.-
T Consensus        90 ~~--~d~Vv~NlP  100 (258)
T PRK14896         90 PE--FNKVVSNLP  100 (258)
T ss_pred             hh--ceEEEEcCC
Confidence            64  899998754

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.33  E-value=5.8e-07  Score=71.00  Aligned_cols=72  Identities=24%  Similarity=0.331  Sum_probs=54.8

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCCC--CCCCceeeeeeccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHLP--YPSRAFDMAQCSRC  276 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rLP--Fpd~SFDlV~cs~~  276 (283)
                      .+|||+|||+|.++..++++.  ...+.++|+++..++.|+++    +.  +..+.+.|...++  +++++||+|+++--
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP   79 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP   79 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred             CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence            489999999999999988876  34678899999988887653    33  3567777877776  89999999999765


Q ss_pred             cc
Q 038698          277 LI  278 (283)
Q Consensus       277 Li  278 (283)
                      ..
T Consensus        80 ~~   81 (117)
T PF13659_consen   80 YG   81 (117)
T ss_dssp             TT
T ss_pred             Cc
Confidence            44

...

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.33  E-value=2.7e-06  Score=81.83  Aligned_cols=92  Identities=18%  Similarity=0.243  Sum_probs=60.4

Q ss_pred             CCCCc-hhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEe
Q 038698          181 MFPQG-ADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGV  255 (283)
Q Consensus       181 ~F~~g-a~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v  255 (283)
                      .|..+ .+.-.+.+.+.++....  .+|||+|||+|.++..|+++.. ...+.++|+++.+++.|.+.    ++...+..
T Consensus       175 vFs~~~lD~gt~lLl~~l~~~~~--g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~  251 (342)
T PRK09489        175 VFSRDGLDVGSQLLLSTLTPHTK--GKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLEGEVFA  251 (342)
T ss_pred             CCCCCCCCHHHHHHHHhccccCC--CeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEE
Confidence            44442 34444556666653222  3799999999999999998743 23577889999888877542    44444443


Q ss_pred             ccccCCCCCCCceeeeeecccc
Q 038698          256 LGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       256 ~da~rLPFpd~SFDlV~cs~~L  277 (283)
                      .+.  +...++.||+|+|+-.+
T Consensus       252 ~D~--~~~~~~~fDlIvsNPPF  271 (342)
T PRK09489        252 SNV--FSDIKGRFDMIISNPPF  271 (342)
T ss_pred             ccc--ccccCCCccEEEECCCc
Confidence            443  23347899999998654

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.31  E-value=1.2e-06  Score=77.08  Aligned_cols=71  Identities=20%  Similarity=0.275  Sum_probs=53.3

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCCCC-CCceeeeeecccc
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLPYP-SRAFDMAQCSRCL  277 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLPFp-d~SFDlV~cs~~L  277 (283)
                      ..+|||+|||+|.++..|++.+.   .+.+.|.++.++..+.++    +. ...+...+...++.. .++||+|+++.++
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l  122 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL  122 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence            36899999999999998887643   366788888887777653    33 345555677777765 4899999998766

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.30  E-value=3.2e-07  Score=85.83  Aligned_cols=69  Identities=25%  Similarity=0.305  Sum_probs=50.0

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC--CeE---------EEeccccCCCCCCCceeeeee
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV--PAV---------IGVLGTIHLPYPSRAFDMAQC  273 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~--~a~---------~~v~da~rLPFpd~SFDlV~c  273 (283)
                      ++|||||||+|-++.-|++.+.   +++|+|+++++|+.|.+...  |..         +...+++.+   .+.||.|+|
T Consensus        91 ~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvc  164 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVC  164 (282)
T ss_pred             ceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeee
Confidence            6799999999999999999764   57899999999999987521  110         111223332   223999999


Q ss_pred             cccccc
Q 038698          274 SRCLIP  279 (283)
Q Consensus       274 s~~Li~  279 (283)
                      +.++.+
T Consensus       165 sevleH  170 (282)
T KOG1270|consen  165 SEVLEH  170 (282)
T ss_pred             HHHHHH
Confidence            999865

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.30  E-value=3.6e-06  Score=82.29  Aligned_cols=102  Identities=15%  Similarity=0.153  Sum_probs=62.8

Q ss_pred             eeeeCCCCCCCCCch-hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc---
Q 038698          172 VFKFPGGGTMFPQGA-DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER---  247 (283)
Q Consensus       172 ~~~Fpgggt~F~~ga-~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er---  247 (283)
                      .+.|-.-...|..+. |.=.+.+.+.++...+  .+|||+|||+|.++..|+++... ..+.++|+++.+++.|++.   
T Consensus       198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~~~~--~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~  274 (378)
T PRK15001        198 DWTIHNHANVFSRTGLDIGARFFMQHLPENLE--GEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVET  274 (378)
T ss_pred             eEEEEecCCccCCCCcChHHHHHHHhCCcccC--CeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHH
Confidence            344433333444432 3224456667765322  48999999999999999887532 3577889999888887643   


Q ss_pred             -CC----CeEEEeccccCCCCCCCceeeeeecccc
Q 038698          248 -GV----PAVIGVLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       248 -g~----~a~~~v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                       +.    .+.+...+... .+++.+||+|+|+-.+
T Consensus       275 n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPPf  308 (378)
T PRK15001        275 NMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPF  308 (378)
T ss_pred             cCcccCceEEEEEccccc-cCCCCCEEEEEECcCc
Confidence             22    12333333321 2355789999997544

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.30  E-value=2.9e-06  Score=73.02  Aligned_cols=79  Identities=20%  Similarity=0.272  Sum_probs=53.9

Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCCCC
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYPSR  266 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFpd~  266 (283)
                      .|.+.++...  ..+|||+|||+|.++..|+++... ..+...|+++.+++.|.+.    ++. +.+...|... +++++
T Consensus        22 lL~~~l~~~~--~~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~   97 (170)
T PF05175_consen   22 LLLDNLPKHK--GGRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDG   97 (170)
T ss_dssp             HHHHHHHHHT--TCEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTT
T ss_pred             HHHHHHhhcc--CCeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-ccccc
Confidence            4445444322  258999999999999999987543 2467889999988877542    454 4444445322 44589


Q ss_pred             ceeeeeec
Q 038698          267 AFDMAQCS  274 (283)
Q Consensus       267 SFDlV~cs  274 (283)
                      .||+|+|+
T Consensus        98 ~fD~Iv~N  105 (170)
T PF05175_consen   98 KFDLIVSN  105 (170)
T ss_dssp             CEEEEEE-
T ss_pred             ceeEEEEc
Confidence            99999997

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.30  E-value=2.2e-06  Score=76.21  Aligned_cols=87  Identities=17%  Similarity=0.205  Sum_probs=60.7

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCC-
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLP-  262 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLP-  262 (283)
                      ..++.|...+....+  .+|||||||+|.++..|.+++.   .+.++|.++.+++.|.++    +....+...+...++ 
T Consensus        35 ~~~~~l~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  109 (233)
T PRK05134         35 LRLNYIREHAGGLFG--KRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAA  109 (233)
T ss_pred             HHHHHHHHhccCCCC--CeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhh
Confidence            345566666643323  6899999999999998888753   467788888888777654    333344445555554 


Q ss_pred             CCCCceeeeeecccccc
Q 038698          263 YPSRAFDMAQCSRCLIP  279 (283)
Q Consensus       263 Fpd~SFDlV~cs~~Li~  279 (283)
                      ..++.||+|+|+.++.+
T Consensus       110 ~~~~~fD~Ii~~~~l~~  126 (233)
T PRK05134        110 EHPGQFDVVTCMEMLEH  126 (233)
T ss_pred             hcCCCccEEEEhhHhhc
Confidence            46689999999887644

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.30  E-value=3.5e-06  Score=76.16  Aligned_cols=71  Identities=18%  Similarity=0.112  Sum_probs=53.7

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH-HcCCC----------------eEEEeccccCCCCCC-C
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL-ERGVP----------------AVIGVLGTIHLPYPS-R  266 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~-erg~~----------------a~~~v~da~rLPFpd-~  266 (283)
                      .+|||+|||+|..+.+|++++.   ++.++|+++..++.+. ++++.                +.+.++|...++..+ .
T Consensus        39 ~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~  115 (218)
T PRK13255         39 SRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA  115 (218)
T ss_pred             CeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence            4899999999999999999865   4678899999888653 44442                335567777775433 6


Q ss_pred             ceeeeeeccccc
Q 038698          267 AFDMAQCSRCLI  278 (283)
Q Consensus       267 SFDlV~cs~~Li  278 (283)
                      .||+|+-+.++.
T Consensus       116 ~fd~v~D~~~~~  127 (218)
T PRK13255        116 DVDAVYDRAALI  127 (218)
T ss_pred             CeeEEEehHhHh
Confidence            899999887764

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.29  E-value=9.9e-07  Score=77.42  Aligned_cols=75  Identities=20%  Similarity=0.252  Sum_probs=55.3

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCC---CCCCceeeeeeccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLP---YPSRAFDMAQCSRC  276 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLP---Fpd~SFDlV~cs~~  276 (283)
                      .+|||||||+|.++..|+++... ..+.++|+++.+++.|.++    ++. ..+..+++..++   +++++||.|+.+-.
T Consensus        18 ~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p   96 (194)
T TIGR00091        18 PLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP   96 (194)
T ss_pred             ceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence            58999999999999999887432 3567888888888777543    443 445556776655   67889999998754


Q ss_pred             ccccc
Q 038698          277 LIPWT  281 (283)
Q Consensus       277 Li~W~  281 (283)
                       .||.
T Consensus        97 -dpw~  100 (194)
T TIGR00091        97 -DPWP  100 (194)
T ss_pred             -CcCC
Confidence             3674

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.27  E-value=2.2e-06  Score=84.13  Aligned_cols=76  Identities=18%  Similarity=0.255  Sum_probs=56.8

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC-eEEEeccccCC--CCCCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP-AVIGVLGTIHL--PYPSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~-a~~~v~da~rL--PFpd~SFDlV~cs~~L  277 (283)
                      ..+||||||+|.++..|+.+.. ...+.|+|+++.++..|++    .++. +.+..+|+..+  +|++++||.|+++-. 
T Consensus       124 p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP-  201 (390)
T PRK14121        124 KILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP-  201 (390)
T ss_pred             CeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC-
Confidence            5899999999999999998753 2356788888887766643    3554 34556677655  689999999998754 


Q ss_pred             ccccc
Q 038698          278 IPWTS  282 (283)
Q Consensus       278 i~W~~  282 (283)
                      .||..
T Consensus       202 dPW~K  206 (390)
T PRK14121        202 VPWDK  206 (390)
T ss_pred             CCccc
Confidence            58853

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.27  E-value=3.5e-06  Score=77.09  Aligned_cols=103  Identities=13%  Similarity=0.076  Sum_probs=62.6

Q ss_pred             CCeeeeCCCCCCCCCchhHHHHHHHhhCCC-CCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC
Q 038698          170 GNVFKFPGGGTMFPQGADAYIDELASVIPI-KDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG  248 (283)
Q Consensus       170 ~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~-~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg  248 (283)
                      ++.+.+-+... |-..+...+..+.+.++. ..+  .++||+|||||.|+..|+++++  -.+.++|++..|+...++..
T Consensus        44 ~d~I~v~~~~~-~vsr~~~kL~~~l~~~~~~~~~--~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~  118 (228)
T TIGR00478        44 DAKIELLQNPL-FVSRGGEKLKEALEEFNIDVKN--KIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQD  118 (228)
T ss_pred             CCEEeccCccc-hhhhhHHHHHHHHHhcCCCCCC--CEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcC
Confidence            34455544322 333334445666666654 233  6899999999999999999854  24667899888876654443


Q ss_pred             CCeE-EEecccc-----CCCCCCCceeeeeecccc
Q 038698          249 VPAV-IGVLGTI-----HLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       249 ~~a~-~~v~da~-----rLPFpd~SFDlV~cs~~L  277 (283)
                      .... +...+.+     .++..-..||++++|.++
T Consensus       119 ~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~  153 (228)
T TIGR00478       119 ERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS  153 (228)
T ss_pred             CCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh
Confidence            3322 2222333     233233589999988764

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.26  E-value=9e-07  Score=80.69  Aligned_cols=75  Identities=24%  Similarity=0.301  Sum_probs=49.8

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCC
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYP  264 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFp  264 (283)
                      -++.|.+.+.  .+  .+|||+|||+|.++..+++.+..  .+.++|+++.+++.|+++    ++...      ..++..
T Consensus       109 ~l~~l~~~~~--~~--~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~------~~~~~~  176 (250)
T PRK00517        109 CLEALEKLVL--PG--KTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELN------VYLPQG  176 (250)
T ss_pred             HHHHHHhhcC--CC--CEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCce------EEEccC
Confidence            3445544432  23  68999999999998887776543  367889999999888754    22111      123333


Q ss_pred             CCceeeeeecc
Q 038698          265 SRAFDMAQCSR  275 (283)
Q Consensus       265 d~SFDlV~cs~  275 (283)
                      +.+||+|+|+.
T Consensus       177 ~~~fD~Vvani  187 (250)
T PRK00517        177 DLKADVIVANI  187 (250)
T ss_pred             CCCcCEEEEcC
Confidence            44899999864

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.25  E-value=6.9e-07  Score=82.89  Aligned_cols=77  Identities=21%  Similarity=0.254  Sum_probs=64.0

Q ss_pred             CccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc---CCCeEEEeccccCCCCCCCceeeeeecccccc
Q 038698          203 SVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER---GVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIP  279 (283)
Q Consensus       203 ~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er---g~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~  279 (283)
                      ...+++|||||.|.....|+.++|.  .+...|.+-.|++.++.-   ++.....+.|-+.|||.+++||+|++|.-+ +
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-H  148 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-H  148 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-h
Confidence            3468999999999999999998864  456678888998888754   344556678999999999999999999998 9


Q ss_pred             ccc
Q 038698          280 WTS  282 (283)
Q Consensus       280 W~~  282 (283)
                      |+.
T Consensus       149 W~N  151 (325)
T KOG2940|consen  149 WTN  151 (325)
T ss_pred             hhc
Confidence            974

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.24  E-value=6.5e-06  Score=71.32  Aligned_cols=80  Identities=13%  Similarity=0.101  Sum_probs=53.4

Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCCCC
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYPSR  266 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFpd~  266 (283)
                      .+.+.+....+  .+|||+|||+|.++..++++.. ...+.++|+++.+++.|.++    ++. ..+...+. ..+++ +
T Consensus        22 ~~~~~l~~~~~--~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~-~~~~~-~   96 (187)
T PRK08287         22 LALSKLELHRA--KHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA-PIELP-G   96 (187)
T ss_pred             HHHHhcCCCCC--CEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc-hhhcC-c
Confidence            34455655444  6899999999999998887632 23567888888888877542    332 33333443 23443 6


Q ss_pred             ceeeeeeccc
Q 038698          267 AFDMAQCSRC  276 (283)
Q Consensus       267 SFDlV~cs~~  276 (283)
                      +||+|++...
T Consensus        97 ~~D~v~~~~~  106 (187)
T PRK08287         97 KADAIFIGGS  106 (187)
T ss_pred             CCCEEEECCC
Confidence            8999998764

>PRK14968 putative methyltransferase; Provisional

Probab=98.20  E-value=4.5e-06  Score=70.87  Aligned_cols=69  Identities=14%  Similarity=0.126  Sum_probs=50.2

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC---eEEEeccccCCCCCCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP---AVIGVLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~---a~~~v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                      .+|||+|||+|.++..|++++   ..+.+.|.++.+++.+++.    +..   +.+...+... ++++++||+|+++.-.
T Consensus        25 ~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~  100 (188)
T PRK14968         25 DRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY  100 (188)
T ss_pred             CEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence            589999999999999998873   3567789999888777543    332   4444445433 5677799999987543

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.18  E-value=5.1e-06  Score=78.71  Aligned_cols=79  Identities=16%  Similarity=0.147  Sum_probs=57.0

Q ss_pred             HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCCC
Q 038698          191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYPS  265 (283)
Q Consensus       191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFpd  265 (283)
                      ..+..+.....|  .+|||.|||+|+++..++..+   ..+.+.|+++.+++.|++.    |+. ..+..+|+.++|+++
T Consensus       172 ~~~~~l~~~~~g--~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~  246 (329)
T TIGR01177       172 RAMVNLARVTEG--DRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSS  246 (329)
T ss_pred             HHHHHHhCCCCc--CEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCccc
Confidence            344445444444  589999999999876655543   2466789988888766532    443 346667899999999


Q ss_pred             Cceeeeeec
Q 038698          266 RAFDMAQCS  274 (283)
Q Consensus       266 ~SFDlV~cs  274 (283)
                      ++||+|+|.
T Consensus       247 ~~~D~Iv~d  255 (329)
T TIGR01177       247 ESVDAIATD  255 (329)
T ss_pred             CCCCEEEEC
Confidence            999999995

This family is found exclusively in the Archaea.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.18  E-value=3.8e-06  Score=82.81  Aligned_cols=83  Identities=18%  Similarity=0.225  Sum_probs=60.9

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEecccc--
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTI--  259 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~--  259 (283)
                      ...++.+.+++....+  .+|||+|||+|.++..|+++.   ..+.++|+++++++.|.+.    ++ ++.+..+++.  
T Consensus       283 e~l~~~vl~~l~~~~~--~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~  357 (443)
T PRK13168        283 QKMVARALEWLDPQPG--DRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEED  357 (443)
T ss_pred             HHHHHHHHHHhcCCCC--CEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHh
Confidence            4556677777765444  689999999999999998874   2567889999998887643    44 3445555643  


Q ss_pred             --CCCCCCCceeeeeec
Q 038698          260 --HLPYPSRAFDMAQCS  274 (283)
Q Consensus       260 --rLPFpd~SFDlV~cs  274 (283)
                        .+|+.+++||+|++.
T Consensus       358 l~~~~~~~~~fD~Vi~d  374 (443)
T PRK13168        358 FTDQPWALGGFDKVLLD  374 (443)
T ss_pred             hhhhhhhcCCCCEEEEC
Confidence              356878899999974

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.16  E-value=5.9e-06  Score=79.11  Aligned_cols=86  Identities=9%  Similarity=0.026  Sum_probs=59.3

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCC
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPY  263 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPF  263 (283)
                      ....+.+.+.+..+  .+|||||||+|.+++.|++.......+.++|.++++++.|+++    |.. +.+..+++...+.
T Consensus        68 l~a~ll~~L~i~~g--~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~  145 (322)
T PRK13943         68 LMALFMEWVGLDKG--MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP  145 (322)
T ss_pred             HHHHHHHhcCCCCC--CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc
Confidence            34456666665544  5899999999999999987521111356778888888777642    443 4455567766666


Q ss_pred             CCCceeeeeeccc
Q 038698          264 PSRAFDMAQCSRC  276 (283)
Q Consensus       264 pd~SFDlV~cs~~  276 (283)
                      ..+.||+|++...
T Consensus       146 ~~~~fD~Ii~~~g  158 (322)
T PRK13943        146 EFAPYDVIFVTVG  158 (322)
T ss_pred             ccCCccEEEECCc
Confidence            6788999998643

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.16  E-value=9.2e-06  Score=71.70  Aligned_cols=83  Identities=14%  Similarity=0.093  Sum_probs=55.4

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYP  264 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFp  264 (283)
                      ...+.+.+....+  .+|||||||+|.++..|++...   .+.++|.++++++.|.++    +.. +.+...+......+
T Consensus        67 ~~~l~~~l~~~~~--~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~  141 (212)
T PRK00312         67 VARMTELLELKPG--DRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA  141 (212)
T ss_pred             HHHHHHhcCCCCC--CEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc
Confidence            3455566665444  6899999999999987777532   456778888888777653    442 44544554332224


Q ss_pred             CCceeeeeecccc
Q 038698          265 SRAFDMAQCSRCL  277 (283)
Q Consensus       265 d~SFDlV~cs~~L  277 (283)
                      .+.||+|++..+.
T Consensus       142 ~~~fD~I~~~~~~  154 (212)
T PRK00312        142 YAPFDRILVTAAA  154 (212)
T ss_pred             CCCcCEEEEccCc
Confidence            5899999987654

>PLN03075 nicotianamine synthase; Provisional

Probab=98.13  E-value=5.1e-06  Score=78.92  Aligned_cols=78  Identities=14%  Similarity=0.129  Sum_probs=55.1

Q ss_pred             CccEEeecCCCccHHHHH-HhhcCCeeEeeccccChHHHHHHHHHc-----CC--CeEEEeccccCCCCCCCceeeeeec
Q 038698          203 SVRTALDTGCGVASWGAY-LLKRNVLTMSFAPRDNHEAQVQFALER-----GV--PAVIGVLGTIHLPYPSRAFDMAQCS  274 (283)
Q Consensus       203 ~~r~VLDVGCGtGsfaa~-L~~r~v~~~sla~~D~s~a~vq~A~er-----g~--~a~~~v~da~rLPFpd~SFDlV~cs  274 (283)
                      .+++|||||||.|-+++. |+++-.....+.++|.++++++.|++.     ++  ...|.++++..++-..+.||+|+|.
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~  202 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA  202 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence            358999999997755444 333323334678899999999888642     33  2557677766654346789999999


Q ss_pred             ccccccc
Q 038698          275 RCLIPWT  281 (283)
Q Consensus       275 ~~Li~W~  281 (283)
                       +++.|.
T Consensus       203 -ALi~~d  208 (296)
T PLN03075        203 -ALVGMD  208 (296)
T ss_pred             -cccccc
Confidence             999995

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.13  E-value=1.3e-05  Score=79.60  Aligned_cols=85  Identities=11%  Similarity=0.140  Sum_probs=57.3

Q ss_pred             hhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCC
Q 038698          186 ADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHL  261 (283)
Q Consensus       186 a~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rL  261 (283)
                      .+..++.+.+.++.  +  .+|||+|||+|.++..|+.+.. ...+.++|+++++++.|++.    +....+...|....
T Consensus       238 TE~LVe~aL~~l~~--~--~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~  312 (423)
T PRK14966        238 TEHLVEAVLARLPE--N--GRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDT  312 (423)
T ss_pred             HHHHHHHhhhccCC--C--CEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcc
Confidence            35556665555432  2  4899999999999988876422 23467889999998887653    44455555565443


Q ss_pred             CCC-CCceeeeeecc
Q 038698          262 PYP-SRAFDMAQCSR  275 (283)
Q Consensus       262 PFp-d~SFDlV~cs~  275 (283)
                      .++ +++||+|+|+-
T Consensus       313 ~l~~~~~FDLIVSNP  327 (423)
T PRK14966        313 DMPSEGKWDIIVSNP  327 (423)
T ss_pred             ccccCCCccEEEECC
Confidence            333 46899999965

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.12  E-value=1.3e-05  Score=78.70  Aligned_cols=79  Identities=16%  Similarity=0.161  Sum_probs=57.0

Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCC--CCC
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLP--YPS  265 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLP--Fpd  265 (283)
                      .+...+....|  .+|||+|||+|..+..|+++... ..+.++|.++.+++.++++    |..+.+...|+..++  +++
T Consensus       235 ~~~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~  311 (427)
T PRK10901        235 LAATLLAPQNG--ERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDG  311 (427)
T ss_pred             HHHHHcCCCCC--CEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhccc
Confidence            44455655555  68999999999999998886321 3567889999888777543    555556666777765  457


Q ss_pred             Cceeeeee
Q 038698          266 RAFDMAQC  273 (283)
Q Consensus       266 ~SFDlV~c  273 (283)
                      ++||.|++
T Consensus       312 ~~fD~Vl~  319 (427)
T PRK10901        312 QPFDRILL  319 (427)
T ss_pred             CCCCEEEE
Confidence            89999993

>PHA03412 putative methyltransferase; Provisional

Probab=98.12  E-value=3.9e-06  Score=77.64  Aligned_cols=69  Identities=10%  Similarity=0.073  Sum_probs=52.0

Q ss_pred             cEEeecCCCccHHHHHHhhcCC--eeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeec
Q 038698          205 RTALDTGCGVASWGAYLLKRNV--LTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCS  274 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v--~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs  274 (283)
                      .+|||+|||+|.++..++++..  ....+.++|+.+.+++.|++....+.+...|....++ +++||+|+|+
T Consensus        51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsN  121 (241)
T PHA03412         51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISN  121 (241)
T ss_pred             CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEEC
Confidence            5899999999999988776411  1236788899999999998653345566667766665 5799999996

>TIGR03438 probable methyltransferase

Probab=98.09  E-value=9.4e-06  Score=76.20  Aligned_cols=75  Identities=16%  Similarity=0.147  Sum_probs=50.5

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc------CCCeEEEeccccC-
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER------GVPAVIGVLGTIH-  260 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er------g~~a~~~v~da~r-  260 (283)
                      .+.+.|.+.++.  +  .+|||+|||+|..+..|+++......+.++|++++|++.|+++      ++.+....+|..+ 
T Consensus        52 ~~~~~ia~~~~~--~--~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~  127 (301)
T TIGR03438        52 RHADEIAAATGA--G--CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP  127 (301)
T ss_pred             HHHHHHHHhhCC--C--CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence            345566666642  2  5899999999999999988643234678999999999888654      1233334456544 


Q ss_pred             CCCCCC
Q 038698          261 LPYPSR  266 (283)
Q Consensus       261 LPFpd~  266 (283)
                      ++++..
T Consensus       128 ~~~~~~  133 (301)
T TIGR03438       128 LALPPE  133 (301)
T ss_pred             hhhhcc
Confidence            455544

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.08  E-value=8.8e-06  Score=73.43  Aligned_cols=89  Identities=13%  Similarity=0.097  Sum_probs=55.4

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHL  261 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rL  261 (283)
                      -.-...+.+.+.++.|  .+|||||||+|++++.|...--....+..+|..++.++.|+++    +. ++.+..+|...-
T Consensus        58 P~~~a~~l~~L~l~pg--~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g  135 (209)
T PF01135_consen   58 PSMVARMLEALDLKPG--DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG  135 (209)
T ss_dssp             HHHHHHHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT
T ss_pred             HHHHHHHHHHHhcCCC--CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc
Confidence            3345577778877767  6999999999999998887411111344567777777666543    55 345666664332


Q ss_pred             CCCCCceeeeeecccc
Q 038698          262 PYPSRAFDMAQCSRCL  277 (283)
Q Consensus       262 PFpd~SFDlV~cs~~L  277 (283)
                      --....||.|++..+.
T Consensus       136 ~~~~apfD~I~v~~a~  151 (209)
T PF01135_consen  136 WPEEAPFDRIIVTAAV  151 (209)
T ss_dssp             TGGG-SEEEEEESSBB
T ss_pred             cccCCCcCEEEEeecc
Confidence            2245689999998765

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.07  E-value=1.1e-05  Score=73.59  Aligned_cols=80  Identities=14%  Similarity=0.155  Sum_probs=58.5

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---CCeEEEeccccCCCCCC
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---VPAVIGVLGTIHLPYPS  265 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---~~a~~~v~da~rLPFpd  265 (283)
                      .++.|.+.+....+  .+|||||||+|.++..|+++..   .+.++|.++++++.+.++-   ....+..+|+..+|++ 
T Consensus        17 i~~~i~~~~~~~~~--~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~-   90 (253)
T TIGR00755        17 VIQKIVEAANVLEG--DVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP-   90 (253)
T ss_pred             HHHHHHHhcCCCCc--CEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh-
Confidence            45667777765433  6899999999999999999753   3566788888888776541   2345666788888886 


Q ss_pred             Ccee---eeeecc
Q 038698          266 RAFD---MAQCSR  275 (283)
Q Consensus       266 ~SFD---lV~cs~  275 (283)
                       +||   +|+++.
T Consensus        91 -~~d~~~~vvsNl  102 (253)
T TIGR00755        91 -DFPKQLKVVSNL  102 (253)
T ss_pred             -HcCCcceEEEcC
Confidence             566   777764

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.07  E-value=3.5e-06  Score=84.73  Aligned_cols=139  Identities=19%  Similarity=0.318  Sum_probs=92.7

Q ss_pred             ccccccCCCCC-----CCCCCCCCCCCceeee--cccCCchhhhhh---hhcCceeecCCeeeeCCCCCCCCCchhHHHH
Q 038698          122 KLHCLIPAPKG-----YMTPFPWPKGRDYVHY--ANVPHKSLTVEK---AVQNWVQFQGNVFKFPGGGTMFPQGADAYID  191 (283)
Q Consensus       122 ~~~Clv~~P~~-----Y~~P~~wP~sr~~~W~--~n~p~~~L~~~k---~~q~w~~~~~~~~~Fpgggt~F~~ga~~Yid  191 (283)
                      -..|+.|.|..     -..|-+||+-...+-.  ........+.++   ..+.|-+.                 +.+|-.
T Consensus       293 l~~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~-----------------V~~Y~~  355 (506)
T PF03141_consen  293 LEACITPLPEVSSEIAGGWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKR-----------------VSHYKK  355 (506)
T ss_pred             hhhhcCcCCcccccccccCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHH-----------------HHHHHH
Confidence            36788888874     5677888887654322  221122222221   23344331                 233432


Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEecc-ccCCCCCCCceee
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLG-TIHLPYPSRAFDM  270 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~d-a~rLPFpd~SFDl  270 (283)
                      .+.  +.+..+++|.|+|...|.|.|+|.|.+..+-+|.+.+. ..+.-+....+||+-.++.  | -+++++-.+++|+
T Consensus       356 l~~--~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLIG~yh--DWCE~fsTYPRTYDL  430 (506)
T PF03141_consen  356 LLG--LAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLIGVYH--DWCEAFSTYPRTYDL  430 (506)
T ss_pred             hhc--ccccccceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccchhcc--chhhccCCCCcchhh
Confidence            221  22456789999999999999999999999999999997 3444566777888632222  2 5889999999999


Q ss_pred             eeeccccccccc
Q 038698          271 AQCSRCLIPWTS  282 (283)
Q Consensus       271 V~cs~~Li~W~~  282 (283)
                      ||++..+..|..
T Consensus       431 lHA~~lfs~~~~  442 (506)
T PF03141_consen  431 LHADGLFSLYKD  442 (506)
T ss_pred             eehhhhhhhhcc
Confidence            999999887753

; GO: 0008168 methyltransferase activity

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.06  E-value=2.2e-05  Score=71.19  Aligned_cols=85  Identities=16%  Similarity=0.195  Sum_probs=56.9

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc---C--CCeEEEeccccCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER---G--VPAVIGVLGTIHL  261 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er---g--~~a~~~v~da~rL  261 (283)
                      +..++.+.+.+....  ..+|||+|||+|.++..|++... ...+.+.|+++.+++.|.+.   .  ....+...+... 
T Consensus        94 e~l~~~~~~~~~~~~--~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-  169 (275)
T PRK09328         94 EELVEWALEALLLKE--PLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-  169 (275)
T ss_pred             HHHHHHHHHhccccC--CCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-
Confidence            455665554444322  35899999999999999887632 23567889999988887754   1  123444445422 


Q ss_pred             CCCCCceeeeeecc
Q 038698          262 PYPSRAFDMAQCSR  275 (283)
Q Consensus       262 PFpd~SFDlV~cs~  275 (283)
                      ++++++||+|+|+-
T Consensus       170 ~~~~~~fD~Iv~np  183 (275)
T PRK09328        170 PLPGGRFDLIVSNP  183 (275)
T ss_pred             cCCCCceeEEEECC
Confidence            45578999999963

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.06  E-value=7.1e-06  Score=77.40  Aligned_cols=83  Identities=12%  Similarity=0.163  Sum_probs=58.3

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHL  261 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rL  261 (283)
                      ....+.+.+++....+  .+|||+|||+|.++..|++++.   .+.++|+++.+++.|.+.    ++. +.+..+++..+
T Consensus       159 ~~l~~~v~~~l~~~~~--~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~  233 (315)
T PRK03522        159 AQLYATARDWVRELPP--RSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQF  233 (315)
T ss_pred             HHHHHHHHHHHHhcCC--CEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHH
Confidence            3445555566543223  6899999999999999998753   567889999988877532    553 55666776665


Q ss_pred             CC-CCCceeeeeec
Q 038698          262 PY-PSRAFDMAQCS  274 (283)
Q Consensus       262 PF-pd~SFDlV~cs  274 (283)
                      .. .++.||+|++.
T Consensus       234 ~~~~~~~~D~Vv~d  247 (315)
T PRK03522        234 ATAQGEVPDLVLVN  247 (315)
T ss_pred             HHhcCCCCeEEEEC
Confidence            43 45689999975

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.05  E-value=3.3e-05  Score=72.19  Aligned_cols=68  Identities=13%  Similarity=0.105  Sum_probs=49.5

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCCCCCCCceeeeeec
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLPYPSRAFDMAQCS  274 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLPFpd~SFDlV~cs  274 (283)
                      .+|||+|||+|.++..|+++.. ...+.++|+++.+++.|++.    ++.  ..+...|... ++++++||+|+|+
T Consensus       123 ~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~N  196 (284)
T TIGR03533       123 KRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSN  196 (284)
T ss_pred             CEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEEC
Confidence            5899999999999999988632 22567889999998877643    543  3455555422 4567789999996

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PHA03411 putative methyltransferase; Provisional

Probab=98.05  E-value=8.6e-06  Score=76.83  Aligned_cols=71  Identities=11%  Similarity=0.059  Sum_probs=53.4

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                      .+|||+|||+|.++..++++.. ...+.++|+++.+++.|+++-..+.+...|+..++ .+.+||+|+++--.
T Consensus        66 grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF  136 (279)
T PHA03411         66 GKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPF  136 (279)
T ss_pred             CeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCc
Confidence            5899999999999888877531 13577889999999998875334556666776665 35789999997654

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.04  E-value=1.9e-05  Score=73.65  Aligned_cols=86  Identities=20%  Similarity=0.222  Sum_probs=58.0

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC--eEEEeccccCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP--AVIGVLGTIHLPY  263 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~--a~~~v~da~rLPF  263 (283)
                      .+.|.+.+....  .++|||||||+|.++..++++... ..+..+|. +.+++.|.+    .|..  ..+...|....++
T Consensus       138 ~~~l~~~~~~~~--~~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~  213 (306)
T TIGR02716       138 IQLLLEEAKLDG--VKKMIDVGGGIGDISAAMLKHFPE-LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY  213 (306)
T ss_pred             HHHHHHHcCCCC--CCEEEEeCCchhHHHHHHHHHCCC-CEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC
Confidence            445556665533  379999999999999999887422 24456676 456666543    3443  3355567766777


Q ss_pred             CCCceeeeeecccccccc
Q 038698          264 PSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       264 pd~SFDlV~cs~~Li~W~  281 (283)
                      ++  +|+|+++.++-.|.
T Consensus       214 ~~--~D~v~~~~~lh~~~  229 (306)
T TIGR02716       214 PE--ADAVLFCRILYSAN  229 (306)
T ss_pred             CC--CCEEEeEhhhhcCC
Confidence            65  69999999987774

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.04  E-value=1.3e-05  Score=76.31  Aligned_cols=80  Identities=25%  Similarity=0.380  Sum_probs=54.0

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPS  265 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd  265 (283)
                      ++.|.+++.  .|  ++|||+|||+|-++...++.+..  .+.+.|+.+-.++.|++.    ++...........+.++.
T Consensus       153 L~~Le~~~~--~g--~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~  226 (300)
T COG2264         153 LEALEKLLK--KG--KTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE  226 (300)
T ss_pred             HHHHHHhhc--CC--CEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc
Confidence            667766665  23  79999999999888777766543  356778888888877643    555322222233455666


Q ss_pred             -Cceeeeeecc
Q 038698          266 -RAFDMAQCSR  275 (283)
Q Consensus       266 -~SFDlV~cs~  275 (283)
                       +.||+|+|+-
T Consensus       227 ~~~~DvIVANI  237 (300)
T COG2264         227 NGPFDVIVANI  237 (300)
T ss_pred             cCcccEEEehh
Confidence             4999999974

>PRK04266 fibrillarin; Provisional

Probab=98.01  E-value=2.2e-05  Score=71.40  Aligned_cols=78  Identities=12%  Similarity=-0.021  Sum_probs=50.4

Q ss_pred             hhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc--C-CCeEEEeccccC----CCCCCCc
Q 038698          195 SVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER--G-VPAVIGVLGTIH----LPYPSRA  267 (283)
Q Consensus       195 ~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er--g-~~a~~~v~da~r----LPFpd~S  267 (283)
                      +.+++..|  .+|||+|||+|.++..|+++-. ...+.++|+++.+++.+.++  . .++.+..+++..    .+++ .+
T Consensus        66 ~~l~i~~g--~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~  141 (226)
T PRK04266         66 KNFPIKKG--SKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EK  141 (226)
T ss_pred             hhCCCCCC--CEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-cc
Confidence            45776666  5899999999999999988621 22467789998877644322  1 123333445443    2333 56


Q ss_pred             eeeeeeccc
Q 038698          268 FDMAQCSRC  276 (283)
Q Consensus       268 FDlV~cs~~  276 (283)
                      ||+|++...
T Consensus       142 ~D~i~~d~~  150 (226)
T PRK04266        142 VDVIYQDVA  150 (226)
T ss_pred             CCEEEECCC
Confidence            999997543

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.01  E-value=1.3e-05  Score=58.67  Aligned_cols=71  Identities=18%  Similarity=0.163  Sum_probs=49.3

Q ss_pred             EEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH---cC--CCeEEEeccccCCCC-CCCceeeeeeccccc
Q 038698          206 TALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE---RG--VPAVIGVLGTIHLPY-PSRAFDMAQCSRCLI  278 (283)
Q Consensus       206 ~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e---rg--~~a~~~v~da~rLPF-pd~SFDlV~cs~~Li  278 (283)
                      ++||+|||+|.++..+.+..  ...+.+.|.++.+++.+.+   .+  ....+...+....+. ..+.||+|++..++.
T Consensus         1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~   77 (107)
T cd02440           1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLH   77 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEcccee
Confidence            48999999999999888732  3356778888888776651   12  123344445444443 678899999988874

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.00  E-value=2.6e-05  Score=73.88  Aligned_cols=68  Identities=13%  Similarity=0.088  Sum_probs=49.1

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCCCCCCCceeeeeec
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLPYPSRAFDMAQCS  274 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLPFpd~SFDlV~cs  274 (283)
                      .+|||+|||+|.++..|+.+.. ...+.+.|+++.+++.|++.    ++.  ..+..+|... ++++++||+|+|+
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsN  208 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSN  208 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEEC
Confidence            5899999999999999887632 23567889999998877643    442  4455555422 3456789999997

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.00  E-value=1.2e-05  Score=72.32  Aligned_cols=72  Identities=22%  Similarity=0.224  Sum_probs=58.9

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH----HcCCC--eEEEeccccCCCCCCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL----ERGVP--AVIGVLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~----erg~~--a~~~v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                      .+|||+|||.|.+...|++.+... .+.|+|.++..|..|.    .++.+  +.+.++|...-.|..+.||+|+--..+
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~  146 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL  146 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence            489999999999999999987654 4899999999988764    33666  568888877778999999999865544

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.99  E-value=1.2e-05  Score=70.61  Aligned_cols=77  Identities=21%  Similarity=0.164  Sum_probs=49.4

Q ss_pred             hCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccC-CCCCCCce
Q 038698          196 VIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIH-LPYPSRAF  268 (283)
Q Consensus       196 ~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~r-LPFpd~SF  268 (283)
                      .+.+..+  .+|||+|||+|.++..++..-.....+.++|+++.+++.|+++    ++  ...+...+... ++..++.|
T Consensus        35 ~l~~~~~--~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~  112 (198)
T PRK00377         35 KLRLRKG--DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF  112 (198)
T ss_pred             HcCCCCc--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence            3444334  5899999999999887765311112466778888888776543    42  23344445544 44455789


Q ss_pred             eeeeec
Q 038698          269 DMAQCS  274 (283)
Q Consensus       269 DlV~cs  274 (283)
                      |.|++.
T Consensus       113 D~V~~~  118 (198)
T PRK00377        113 DRIFIG  118 (198)
T ss_pred             CEEEEC
Confidence            999984

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.97  E-value=1.2e-05  Score=69.90  Aligned_cols=79  Identities=14%  Similarity=0.074  Sum_probs=47.0

Q ss_pred             HHHHHhhCC-CCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCC------
Q 038698          190 IDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLP------  262 (283)
Q Consensus       190 id~I~~~l~-~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLP------  262 (283)
                      +.++.+.+. +..|  .+|||+|||+|.++..++++......+.++|+++.+    ...+  +.+..++...++      
T Consensus        20 ~~~~~~~~~~i~~g--~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~--i~~~~~d~~~~~~~~~l~   91 (188)
T TIGR00438        20 LLQLNQKFKLIKPG--DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIEN--VDFIRGDFTDEEVLNKIR   91 (188)
T ss_pred             HHHHHHHhcccCCC--CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCC--ceEEEeeCCChhHHHHHH
Confidence            334444443 2334  689999999999988887653211234556666543    1112  333444554443      


Q ss_pred             --CCCCceeeeeeccc
Q 038698          263 --YPSRAFDMAQCSRC  276 (283)
Q Consensus       263 --Fpd~SFDlV~cs~~  276 (283)
                        +++++||+|+|..+
T Consensus        92 ~~~~~~~~D~V~~~~~  107 (188)
T TIGR00438        92 ERVGDDKVDVVMSDAA  107 (188)
T ss_pred             HHhCCCCccEEEcCCC
Confidence              67889999999653

>TIGR00536 hemK_fam HemK family putative methylases

Probab=97.96  E-value=2.6e-05  Score=72.53  Aligned_cols=85  Identities=12%  Similarity=0.123  Sum_probs=55.8

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIH  260 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~r  260 (283)
                      +..++.+.+.+... ....+|||+|||+|.++..|+.... ...+.++|+++.+++.|.+.    +..  ..+...+...
T Consensus        99 e~lv~~~l~~~~~~-~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~  176 (284)
T TIGR00536        99 EELVEKALASLISQ-NPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE  176 (284)
T ss_pred             HHHHHHHHHHhhhc-CCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc
Confidence            44555554433211 1125899999999999998887532 22567889999998877653    443  4455555433


Q ss_pred             CCCCCCceeeeeec
Q 038698          261 LPYPSRAFDMAQCS  274 (283)
Q Consensus       261 LPFpd~SFDlV~cs  274 (283)
                       +++++.||+|+|+
T Consensus       177 -~~~~~~fDlIvsN  189 (284)
T TIGR00536       177 -PLAGQKIDIIVSN  189 (284)
T ss_pred             -cCcCCCccEEEEC
Confidence             5666689999996

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=97.91  E-value=7.2e-05  Score=68.79  Aligned_cols=89  Identities=18%  Similarity=0.195  Sum_probs=55.6

Q ss_pred             chhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc--CCCeEEEeccccC-C
Q 038698          185 GADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER--GVPAVIGVLGTIH-L  261 (283)
Q Consensus       185 ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er--g~~a~~~v~da~r-L  261 (283)
                      .+...++.+.+.+.... ...+|||+|||+|.++..|+++.. ...+.++|+++.+++.|++.  .....+...|... +
T Consensus        69 ~Te~Lv~~~l~~~~~~~-~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l  146 (251)
T TIGR03704        69 RTEFLVDEAAALARPRS-GTLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDAL  146 (251)
T ss_pred             cHHHHHHHHHHhhcccC-CCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhc
Confidence            44566776666554221 235899999999999988876521 22457789999988877643  1112334445332 3


Q ss_pred             CC-CCCceeeeeecc
Q 038698          262 PY-PSRAFDMAQCSR  275 (283)
Q Consensus       262 PF-pd~SFDlV~cs~  275 (283)
                      +- ..+.||+|+++-
T Consensus       147 ~~~~~~~fDlVv~NP  161 (251)
T TIGR03704       147 PTALRGRVDILAANA  161 (251)
T ss_pred             chhcCCCEeEEEECC
Confidence            21 135799999874

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=97.88  E-value=3.8e-05  Score=71.43  Aligned_cols=88  Identities=22%  Similarity=0.301  Sum_probs=59.4

Q ss_pred             CCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEe
Q 038698          182 FPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGV  255 (283)
Q Consensus       182 F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v  255 (283)
                      |.-+.|.-  .|...++...  ..+|||+|||+|..+-.|++|--. ..+.++++.+++.++|.+.    +..  +.+..
T Consensus        27 ~~~~~Dai--LL~~~~~~~~--~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~  101 (248)
T COG4123          27 FRYGTDAI--LLAAFAPVPK--KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIE  101 (248)
T ss_pred             cccccHHH--HHHhhccccc--CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEeh
Confidence            44455554  5666666533  479999999999999888887322 4678889999988888743    121  33444


Q ss_pred             ccccCC--CCCCCceeeeeec
Q 038698          256 LGTIHL--PYPSRAFDMAQCS  274 (283)
Q Consensus       256 ~da~rL--PFpd~SFDlV~cs  274 (283)
                      +|..++  ++.-.+||+|+|+
T Consensus       102 ~Di~~~~~~~~~~~fD~Ii~N  122 (248)
T COG4123         102 ADIKEFLKALVFASFDLIICN  122 (248)
T ss_pred             hhHHHhhhcccccccCEEEeC
Confidence            564444  2344589999997

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.86  E-value=3.6e-05  Score=72.73  Aligned_cols=81  Identities=17%  Similarity=0.174  Sum_probs=58.1

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----C--CCeEEEeccccCC
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----G--VPAVIGVLGTIHL  261 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g--~~a~~~v~da~rL  261 (283)
                      ..++.|.+.+....+  .+|||||||+|.++..|+++..   .+.++|+++.+++.+.++    +  ....+...|+...
T Consensus        23 ~i~~~Iv~~~~~~~~--~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~   97 (294)
T PTZ00338         23 LVLDKIVEKAAIKPT--DTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT   97 (294)
T ss_pred             HHHHHHHHhcCCCCc--CEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence            357778887776544  6899999999999999998743   356778888888877653    2  1244555676555


Q ss_pred             CCCCCceeeeeecc
Q 038698          262 PYPSRAFDMAQCSR  275 (283)
Q Consensus       262 PFpd~SFDlV~cs~  275 (283)
                      +++  .||+|+++.
T Consensus        98 ~~~--~~d~VvaNl  109 (294)
T PTZ00338         98 EFP--YFDVCVANV  109 (294)
T ss_pred             ccc--ccCEEEecC
Confidence            554  689998763

>PRK00811 spermidine synthase; Provisional

Probab=97.84  E-value=4.5e-05  Score=71.28  Aligned_cols=87  Identities=16%  Similarity=0.122  Sum_probs=56.9

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc------C----CCeEEEe
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER------G----VPAVIGV  255 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er------g----~~a~~~v  255 (283)
                      -.|.+.|....-.....+++|||||||+|..+..++++ ++  ..+..+|+++++++.|++.      +    ....+..
T Consensus        60 ~~Y~e~l~h~~~~~~~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~  137 (283)
T PRK00811         60 FIYHEMMTHVPLFAHPNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVI  137 (283)
T ss_pred             hhHHHHhhhHHHhhCCCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEE
Confidence            34665554332222234579999999999999998876 33  2466788888888888753      1    1233444


Q ss_pred             ccccC-CCCCCCceeeeeecc
Q 038698          256 LGTIH-LPYPSRAFDMAQCSR  275 (283)
Q Consensus       256 ~da~r-LPFpd~SFDlV~cs~  275 (283)
                      .|+.+ ++..+++||+|++-.
T Consensus       138 ~Da~~~l~~~~~~yDvIi~D~  158 (283)
T PRK00811        138 GDGIKFVAETENSFDVIIVDS  158 (283)
T ss_pred             CchHHHHhhCCCcccEEEECC
Confidence            55433 444678999999854

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=97.84  E-value=2.6e-05  Score=73.93  Aligned_cols=78  Identities=23%  Similarity=0.249  Sum_probs=45.9

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCCeEEEeccccCCCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVPAVIGVLGTIHLPYPS  265 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~a~~~v~da~rLPFpd  265 (283)
                      ++.|.++...  |  .+|||||||+|-++..-+..+..  .+.++|+.+..++.|++    .++...+.+..  ...+..
T Consensus       152 l~~l~~~~~~--g--~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~  223 (295)
T PF06325_consen  152 LELLEKYVKP--G--KRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDLVE  223 (295)
T ss_dssp             HHHHHHHSST--T--SEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCC
T ss_pred             HHHHHHhccC--C--CEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--eccccc
Confidence            6666666432  4  69999999999776544444332  24556666666666553    35544443322  334556


Q ss_pred             Cceeeeeecc
Q 038698          266 RAFDMAQCSR  275 (283)
Q Consensus       266 ~SFDlV~cs~  275 (283)
                      ..||+|+++-
T Consensus       224 ~~~dlvvANI  233 (295)
T PF06325_consen  224 GKFDLVVANI  233 (295)
T ss_dssp             S-EEEEEEES
T ss_pred             ccCCEEEECC
Confidence            9999999874

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=97.83  E-value=4.6e-05  Score=75.32  Aligned_cols=76  Identities=11%  Similarity=0.043  Sum_probs=52.5

Q ss_pred             hhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCCCCcee
Q 038698          195 SVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYPSRAFD  269 (283)
Q Consensus       195 ~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFpd~SFD  269 (283)
                      .++....|  .+|||+|||+|..+..|++.--....+.++|+++.+++.+.++    |+. +.+...++..++ ++++||
T Consensus       244 ~~l~~~~g--~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD  320 (445)
T PRK14904        244 LLLNPQPG--STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPD  320 (445)
T ss_pred             HhcCCCCC--CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCC
Confidence            44444444  6899999999998877776411122567889999888766533    654 345566777765 678999


Q ss_pred             eeee
Q 038698          270 MAQC  273 (283)
Q Consensus       270 lV~c  273 (283)
                      +|++
T Consensus       321 ~Vl~  324 (445)
T PRK14904        321 AILL  324 (445)
T ss_pred             EEEE
Confidence            9994

>PRK04148 hypothetical protein; Provisional

Probab=97.82  E-value=6e-05  Score=64.11  Aligned_cols=79  Identities=14%  Similarity=0.095  Sum_probs=55.8

Q ss_pred             HHHHhhCCCCCCCccEEeecCCCccH-HHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCC-CCce
Q 038698          191 DELASVIPIKDGSVRTALDTGCGVAS-WGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYP-SRAF  268 (283)
Q Consensus       191 d~I~~~l~~~~g~~r~VLDVGCGtGs-faa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFp-d~SF  268 (283)
                      +.|.+.++...+  .++||||||.|. ++..|.+.+.   ++.++|+++..++.|.+.++.+...  |..+-++. -..+
T Consensus         6 ~~l~~~~~~~~~--~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~d--Dlf~p~~~~y~~a   78 (134)
T PRK04148          6 EFIAENYEKGKN--KKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVD--DLFNPNLEIYKNA   78 (134)
T ss_pred             HHHHHhcccccC--CEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEEC--cCCCCCHHHHhcC
Confidence            345555554333  689999999995 8888988764   5567899999999998888766554  54444443 4668


Q ss_pred             eeeeeccc
Q 038698          269 DMAQCSRC  276 (283)
Q Consensus       269 DlV~cs~~  276 (283)
                      |+|.+-+.
T Consensus        79 ~liysirp   86 (134)
T PRK04148         79 KLIYSIRP   86 (134)
T ss_pred             CEEEEeCC
Confidence            88877653

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=97.79  E-value=4.5e-05  Score=75.42  Aligned_cols=79  Identities=14%  Similarity=0.139  Sum_probs=56.1

Q ss_pred             HHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCC-CCCC
Q 038698          193 LASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLP-YPSR  266 (283)
Q Consensus       193 I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLP-Fpd~  266 (283)
                      +..++....|  .+|||+|||+|..+.+|++.--....+.++|+++.+++.+.++    |+. +.+..+|+..++ +.++
T Consensus       229 ~~~~l~~~~g--~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~  306 (431)
T PRK14903        229 VPLLMELEPG--LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQD  306 (431)
T ss_pred             HHHHhCCCCC--CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhc
Confidence            3444555445  5899999999998888877521123567789999888776533    654 346667887777 6788


Q ss_pred             ceeeeee
Q 038698          267 AFDMAQC  273 (283)
Q Consensus       267 SFDlV~c  273 (283)
                      +||.|++
T Consensus       307 ~fD~Vl~  313 (431)
T PRK14903        307 TFDRILV  313 (431)
T ss_pred             cCCEEEE
Confidence            9999986

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=97.79  E-value=5.4e-05  Score=74.62  Aligned_cols=80  Identities=14%  Similarity=0.024  Sum_probs=55.9

Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCC----
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLP----  262 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLP----  262 (283)
                      .+...+....|  .+|||+|||+|..+..|++..-....+.++|+++.+++.+.++    |+. +.+..+|+..++    
T Consensus       243 l~~~~l~~~~g--~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~  320 (434)
T PRK14901        243 LVAPLLDPQPG--EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKP  320 (434)
T ss_pred             HHHHHhCCCCc--CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccc
Confidence            34455555445  5899999999999988887521122467789998887766432    654 445566777776    


Q ss_pred             CCCCceeeeee
Q 038698          263 YPSRAFDMAQC  273 (283)
Q Consensus       263 Fpd~SFDlV~c  273 (283)
                      +.+++||.|++
T Consensus       321 ~~~~~fD~Vl~  331 (434)
T PRK14901        321 QWRGYFDRILL  331 (434)
T ss_pred             cccccCCEEEE
Confidence            66889999995

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=97.79  E-value=5.8e-05  Score=74.16  Aligned_cols=79  Identities=15%  Similarity=0.080  Sum_probs=55.0

Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEE--EeccccCCCC--
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVI--GVLGTIHLPY--  263 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~--~v~da~rLPF--  263 (283)
                      .+...+....|  .+|||+|||+|..+..|++..- ...+.++|+++.+++.+.++    |+...+  ..++...+++  
T Consensus       229 ~~~~~L~~~~g--~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~  305 (426)
T TIGR00563       229 WVATWLAPQNE--ETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA  305 (426)
T ss_pred             HHHHHhCCCCC--CeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc
Confidence            45556665555  6899999999999988887522 23577889999888766533    555333  4445555555  


Q ss_pred             CCCceeeeee
Q 038698          264 PSRAFDMAQC  273 (283)
Q Consensus       264 pd~SFDlV~c  273 (283)
                      ++++||.|++
T Consensus       306 ~~~~fD~Vll  315 (426)
T TIGR00563       306 ENEQFDRILL  315 (426)
T ss_pred             cccccCEEEE
Confidence            6789999984

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=97.79  E-value=6.5e-05  Score=72.08  Aligned_cols=89  Identities=18%  Similarity=0.243  Sum_probs=57.0

Q ss_pred             chhHHHHHHHhhCCCC------CCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc---C--CCeE-
Q 038698          185 GADAYIDELASVIPIK------DGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER---G--VPAV-  252 (283)
Q Consensus       185 ga~~Yid~I~~~l~~~------~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er---g--~~a~-  252 (283)
                      +.-.||..|.++|...      .|...+|||||||+|.....|..+.. ...+.+.|+++..++.|++.   .  +... 
T Consensus        90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I  168 (321)
T PRK11727         90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAI  168 (321)
T ss_pred             cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence            3567888888876431      23446899999999988877776522 23567889988888877632   2  3211 


Q ss_pred             -EE-eccccCC----CCCCCceeeeeec
Q 038698          253 -IG-VLGTIHL----PYPSRAFDMAQCS  274 (283)
Q Consensus       253 -~~-v~da~rL----PFpd~SFDlV~cs  274 (283)
                       +. +.+...+    -.+++.||+|+|+
T Consensus       169 ~~~~~~~~~~i~~~i~~~~~~fDlivcN  196 (321)
T PRK11727        169 RLRLQKDSKAIFKGIIHKNERFDATLCN  196 (321)
T ss_pred             EEEEccchhhhhhcccccCCceEEEEeC
Confidence             21 1122222    1357799999997

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=97.78  E-value=4.6e-05  Score=74.64  Aligned_cols=82  Identities=16%  Similarity=0.195  Sum_probs=57.3

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccC--
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIH--  260 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~r--  260 (283)
                      ...+.+.+++....+  .+|||+|||+|.++..|++...   .+.++|+++.+++.|++.    ++. +.+..+++..  
T Consensus       279 ~l~~~~~~~l~~~~~--~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l  353 (431)
T TIGR00479       279 KLVDRALEALELQGE--ELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL  353 (431)
T ss_pred             HHHHHHHHHhccCCC--CEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH
Confidence            345566666654333  5899999999999999987632   456788888888877642    443 4455556433  


Q ss_pred             --CCCCCCceeeeeec
Q 038698          261 --LPYPSRAFDMAQCS  274 (283)
Q Consensus       261 --LPFpd~SFDlV~cs  274 (283)
                        +++.+++||+|+..
T Consensus       354 ~~~~~~~~~~D~vi~d  369 (431)
T TIGR00479       354 PKQPWAGQIPDVLLLD  369 (431)
T ss_pred             HHHHhcCCCCCEEEEC
Confidence              45667889999864

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=97.77  E-value=9.2e-05  Score=69.44  Aligned_cols=66  Identities=20%  Similarity=0.223  Sum_probs=45.9

Q ss_pred             EEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCe-EEEeccccCC-CCCCCceeeeeecc
Q 038698          206 TALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPA-VIGVLGTIHL-PYPSRAFDMAQCSR  275 (283)
Q Consensus       206 ~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a-~~~v~da~rL-PFpd~SFDlV~cs~  275 (283)
                      +|||+|||+|..+..|+.+... ..+.+.|+++..++.|++.    |+.. .+...+  -+ +.. +.||+|+|+-
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~d--lf~~~~-~~fDlIVsNP  184 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQSD--LFEPLR-GKFDLIVSNP  184 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeee--cccccC-CceeEEEeCC
Confidence            7999999999999999987543 3577889999998888643    5321 222111  11 223 3899999973

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=97.74  E-value=1.8e-05  Score=72.45  Aligned_cols=70  Identities=20%  Similarity=0.277  Sum_probs=51.5

Q ss_pred             EEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-----CCCeE-EEeccccCCC-CCCCceeeeeecccc
Q 038698          206 TALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-----GVPAV-IGVLGTIHLP-YPSRAFDMAQCSRCL  277 (283)
Q Consensus       206 ~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-----g~~a~-~~v~da~rLP-Fpd~SFDlV~cs~~L  277 (283)
                      .+|.||||||..-.++.-..  .-+++.+|.++.|.++|.++     ..... +.+++.++|| .+|+|+|+|+|..||
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~p--~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL  155 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWKP--INSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL  155 (252)
T ss_pred             ceEEecccCCCCcccccCCC--CceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence            58999999998766655321  22456777777776665432     23333 7788999999 999999999999887

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=97.73  E-value=9e-05  Score=73.10  Aligned_cols=81  Identities=19%  Similarity=0.173  Sum_probs=55.2

Q ss_pred             HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCC--C
Q 038698          191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLP--Y  263 (283)
Q Consensus       191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLP--F  263 (283)
                      ..+...+....|  .+|||+|||+|.++..|+++--....+.++|+++.+++.+.++    |+. +.+..+|+..++  +
T Consensus       240 ~lv~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~  317 (444)
T PRK14902        240 MLVAPALDPKGG--DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKF  317 (444)
T ss_pred             HHHHHHhCCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchh
Confidence            345555655444  6899999999999988887521123567889998888776542    554 345556766653  4


Q ss_pred             CCCceeeeeec
Q 038698          264 PSRAFDMAQCS  274 (283)
Q Consensus       264 pd~SFDlV~cs  274 (283)
                      + ++||+|++.
T Consensus       318 ~-~~fD~Vl~D  327 (444)
T PRK14902        318 A-EKFDKILVD  327 (444)
T ss_pred             c-ccCCEEEEc
Confidence            4 889999964

>PTZ00146 fibrillarin; Provisional

Probab=97.70  E-value=6.5e-05  Score=71.39  Aligned_cols=79  Identities=14%  Similarity=-0.017  Sum_probs=48.8

Q ss_pred             CCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHH----HHHHHHHcCCCeEEEeccccC---CCCCCCceee
Q 038698          198 PIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEA----QVQFALERGVPAVIGVLGTIH---LPYPSRAFDM  270 (283)
Q Consensus       198 ~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a----~vq~A~erg~~a~~~v~da~r---LPFpd~SFDl  270 (283)
                      ++..|  .+|||+|||+|+++..|++.--..-.+..+|+++.    ++..|.++ .++.....|+..   ++++..+||+
T Consensus       129 ~IkpG--~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDv  205 (293)
T PTZ00146        129 PIKPG--SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDV  205 (293)
T ss_pred             ccCCC--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCE
Confidence            44455  68999999999999999986211113455677764    44555554 222333345432   2334568999


Q ss_pred             eeeccccccc
Q 038698          271 AQCSRCLIPW  280 (283)
Q Consensus       271 V~cs~~Li~W  280 (283)
                      |++..+ .+|
T Consensus       206 V~~Dva-~pd  214 (293)
T PTZ00146        206 IFADVA-QPD  214 (293)
T ss_pred             EEEeCC-Ccc
Confidence            999765 355

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=97.69  E-value=7.9e-05  Score=68.77  Aligned_cols=76  Identities=8%  Similarity=0.029  Sum_probs=53.1

Q ss_pred             hCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCCCCceee
Q 038698          196 VIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYPSRAFDM  270 (283)
Q Consensus       196 ~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFpd~SFDl  270 (283)
                      .+....|  .+|||+|||+|..+..|++.--....+.++|+++.+++.+.++    |+. +.+...|+..++...+.||.
T Consensus        66 ~l~~~~g--~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~  143 (264)
T TIGR00446        66 ALEPDPP--ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDA  143 (264)
T ss_pred             HhCCCCc--CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCE
Confidence            4444445  5899999999999988877421112467789999888766532    553 34555677777777778999


Q ss_pred             eee
Q 038698          271 AQC  273 (283)
Q Consensus       271 V~c  273 (283)
                      |++
T Consensus       144 Vl~  146 (264)
T TIGR00446       144 ILL  146 (264)
T ss_pred             EEE
Confidence            985

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=97.68  E-value=0.00018  Score=64.39  Aligned_cols=101  Identities=15%  Similarity=0.141  Sum_probs=60.2

Q ss_pred             cCCeeeeCCCCCCCCCchhHHHHHHHhhCCC-CCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc
Q 038698          169 QGNVFKFPGGGTMFPQGADAYIDELASVIPI-KDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER  247 (283)
Q Consensus       169 ~~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~-~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er  247 (283)
                      .|-++..|.+... --..+.-.+.+.+++.. ..+  .+|||+|||+|+++..++.++.  ..+.++|.+++.++.|.+.
T Consensus        21 ~g~~l~~~~~~~~-Rp~~d~v~e~l~~~l~~~~~~--~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~N   95 (199)
T PRK10909         21 RGRKLPVPDSPGL-RPTTDRVRETLFNWLAPVIVD--ARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKN   95 (199)
T ss_pred             CCCEeCCCCCCCc-CcCCHHHHHHHHHHHhhhcCC--CEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHH
Confidence            3455666664322 22344445555665542 233  5899999999999986555543  2466778888777655432


Q ss_pred             ----CC-CeEEEeccccC-CCCCCCceeeeeec
Q 038698          248 ----GV-PAVIGVLGTIH-LPYPSRAFDMAQCS  274 (283)
Q Consensus       248 ----g~-~a~~~v~da~r-LPFpd~SFDlV~cs  274 (283)
                          ++ .+.+...|+.. |+..+.+||+|++.
T Consensus        96 l~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~D  128 (199)
T PRK10909         96 LATLKAGNARVVNTNALSFLAQPGTPHNVVFVD  128 (199)
T ss_pred             HHHhCCCcEEEEEchHHHHHhhcCCCceEEEEC
Confidence                43 23444455433 44345679999975

>PRK01581 speE spermidine synthase; Validated

Probab=97.68  E-value=0.00012  Score=71.72  Aligned_cols=122  Identities=14%  Similarity=0.072  Sum_probs=75.4

Q ss_pred             ceeeecccCCchhhhhhhhcCceeecCCeeeeCCCCCCCCCch-hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHh
Q 038698          144 DYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMFPQGA-DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLL  222 (283)
Q Consensus       144 ~~~W~~n~p~~~L~~~k~~q~w~~~~~~~~~Fpgggt~F~~ga-~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~  222 (283)
                      +++-+..-||..+....... +       ..|=.|-.||...- -.|.+.|....-.....+++||+||||+|..++.++
T Consensus        98 ~vl~~~~S~yQ~I~I~et~~-~-------~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelL  169 (374)
T PRK01581         98 TNLFAEKSNYQNINLLQVSD-I-------RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVL  169 (374)
T ss_pred             CEEEecCCCCceEEEEEcCC-E-------EEEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHH
Confidence            45555566777765443222 1       23334444554322 457777776432223456899999999999888888


Q ss_pred             hcCCeeEeeccccChHHHHHHHHHc------------CCCeEEEeccccC-CCCCCCceeeeeec
Q 038698          223 KRNVLTMSFAPRDNHEAQVQFALER------------GVPAVIGVLGTIH-LPYPSRAFDMAQCS  274 (283)
Q Consensus       223 ~r~v~~~sla~~D~s~a~vq~A~er------------g~~a~~~v~da~r-LPFpd~SFDlV~cs  274 (283)
                      ++. ....+..+|+++++++.|++.            .....+.+.|+.+ |+-.++.||+|++.
T Consensus       170 k~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvD  233 (374)
T PRK01581        170 KYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIID  233 (374)
T ss_pred             hcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEc
Confidence            763 223567789999999998851            1123344455443 45567889999986

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=97.66  E-value=0.00018  Score=65.96  Aligned_cols=72  Identities=21%  Similarity=0.199  Sum_probs=56.3

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH-----------------cCCCeEEEeccccCCCCCC--
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE-----------------RGVPAVIGVLGTIHLPYPS--  265 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e-----------------rg~~a~~~v~da~rLPFpd--  265 (283)
                      .+||+.|||.|.-+.+|++++.   ++.++|+|+..++.+.+                 ++..+.+.++|...|+...  
T Consensus        45 ~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~  121 (226)
T PRK13256         45 SVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN  121 (226)
T ss_pred             CeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence            5899999999999999999865   45688999988877543                 2345567788888887532  


Q ss_pred             -Cceeeeeecccccc
Q 038698          266 -RAFDMAQCSRCLIP  279 (283)
Q Consensus       266 -~SFDlV~cs~~Li~  279 (283)
                       +.||+|+=..+++.
T Consensus       122 ~~~fD~VyDra~~~A  136 (226)
T PRK13256        122 LPVFDIWYDRGAYIA  136 (226)
T ss_pred             cCCcCeeeeehhHhc
Confidence             68999988877754

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.62  E-value=8.4e-05  Score=75.02  Aligned_cols=69  Identities=16%  Similarity=0.101  Sum_probs=47.7

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCCCCCCCceeeeeecc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLPYPSRAFDMAQCSR  275 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLPFpd~SFDlV~cs~  275 (283)
                      .+|||+|||+|.++..|+.+.. ...+.++|+++.+++.|.+.    ++.  +.+...+... ++++++||+|+|+-
T Consensus       140 ~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNP  214 (506)
T PRK01544        140 LNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNP  214 (506)
T ss_pred             CEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECC
Confidence            5899999999999988876521 23567789999888887653    432  3333344321 34567999999963

>PRK07402 precorrin-6B methylase; Provisional

Probab=97.54  E-value=0.00026  Score=61.79  Aligned_cols=79  Identities=15%  Similarity=0.023  Sum_probs=48.2

Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccC-CCCCC
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIH-LPYPS  265 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~r-LPFpd  265 (283)
                      .+.+.+....+  .+|||+|||+|.++..+++... ...+.++|.++.+++.|.++    +.. ..+...++.. ++...
T Consensus        31 ~l~~~l~~~~~--~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~  107 (196)
T PRK07402         31 LLISQLRLEPD--SVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLA  107 (196)
T ss_pred             HHHHhcCCCCC--CEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCC
Confidence            45566665444  6899999999999888875421 23567788888888777542    443 3344445432 33323


Q ss_pred             Cceeeeee
Q 038698          266 RAFDMAQC  273 (283)
Q Consensus       266 ~SFDlV~c  273 (283)
                      ..+|.|+.
T Consensus       108 ~~~d~v~~  115 (196)
T PRK07402        108 PAPDRVCI  115 (196)
T ss_pred             CCCCEEEE
Confidence            34566544

>PRK03612 spermidine synthase; Provisional

Probab=97.51  E-value=0.00021  Score=72.32  Aligned_cols=87  Identities=16%  Similarity=0.048  Sum_probs=56.7

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-C-----------CCeEEEe
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-G-----------VPAVIGV  255 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-g-----------~~a~~~v  255 (283)
                      .|.+.+....-....+.++|||||||+|..+..++++.. ...+..+|+++++++.|++. .           ....+..
T Consensus       282 ~y~e~l~~~~l~~~~~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~  360 (521)
T PRK03612        282 RYHEALVHPAMAASARPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVN  360 (521)
T ss_pred             HHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEE
Confidence            466665542111112457899999999999988887632 13567789999999998872 0           1233444


Q ss_pred             ccccC-CCCCCCceeeeeecc
Q 038698          256 LGTIH-LPYPSRAFDMAQCSR  275 (283)
Q Consensus       256 ~da~r-LPFpd~SFDlV~cs~  275 (283)
                      .|+.+ +.-.+++||+|++..
T Consensus       361 ~Da~~~l~~~~~~fDvIi~D~  381 (521)
T PRK03612        361 DDAFNWLRKLAEKFDVIIVDL  381 (521)
T ss_pred             ChHHHHHHhCCCCCCEEEEeC
Confidence            55443 344457999999873

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.51  E-value=0.00052  Score=61.88  Aligned_cols=83  Identities=18%  Similarity=0.061  Sum_probs=47.9

Q ss_pred             hhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCC
Q 038698          186 ADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHL  261 (283)
Q Consensus       186 a~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rL  261 (283)
                      ...|+-.++.+-....|  ++|||+|||||.++--.+-.+..  .+.++|+.+++++.+++.    +....+.++|+.+ 
T Consensus        30 ~Aa~il~~a~~~g~l~g--~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~-  104 (198)
T COG2263          30 LAAYILWVAYLRGDLEG--KTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEELLGDVEFVVADVSD-  104 (198)
T ss_pred             HHHHHHHHHHHcCCcCC--CEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhh-
Confidence            34454444444444344  68999999999765433322221  245567777777766532    2345566666655 


Q ss_pred             CCCCCceeeeeecc
Q 038698          262 PYPSRAFDMAQCSR  275 (283)
Q Consensus       262 PFpd~SFDlV~cs~  275 (283)
                        .+.-||.|+.+-
T Consensus       105 --~~~~~dtvimNP  116 (198)
T COG2263         105 --FRGKFDTVIMNP  116 (198)
T ss_pred             --cCCccceEEECC
Confidence              345577776653

>PRK04457 spermidine synthase; Provisional

Probab=97.50  E-value=0.00019  Score=66.53  Aligned_cols=85  Identities=9%  Similarity=0.084  Sum_probs=56.4

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-CC-----CeEEEeccccC-
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-GV-----PAVIGVLGTIH-  260 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-g~-----~a~~~v~da~r-  260 (283)
                      .|.+.|...+... ..+++|||||||+|+++.+|+++.. ...+..+|++++.++.|++. +.     ...+...|+.. 
T Consensus        52 ~y~~~m~~~l~~~-~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~  129 (262)
T PRK04457         52 AYTRAMMGFLLFN-PRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY  129 (262)
T ss_pred             HHHHHHHHHHhcC-CCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH
Confidence            4777665444322 2347899999999999998887632 34577889999999988865 22     13344455322 


Q ss_pred             CCCCCCceeeeeec
Q 038698          261 LPYPSRAFDMAQCS  274 (283)
Q Consensus       261 LPFpd~SFDlV~cs  274 (283)
                      ++-..++||+|++.
T Consensus       130 l~~~~~~yD~I~~D  143 (262)
T PRK04457        130 IAVHRHSTDVILVD  143 (262)
T ss_pred             HHhCCCCCCEEEEe
Confidence            23234689999974

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.48  E-value=0.00022  Score=68.65  Aligned_cols=73  Identities=27%  Similarity=0.265  Sum_probs=46.2

Q ss_pred             CccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---------------CCeEEEecccc------CC
Q 038698          203 SVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---------------VPAVIGVLGTI------HL  261 (283)
Q Consensus       203 ~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---------------~~a~~~v~da~------rL  261 (283)
                      ...+|||+|||-|.-.......++.  .+.++|++...|+.|.+|.               ..+.+..+|..      .+
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~--~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIK--HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCC--EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            3479999999988755555555443  4678999999999988775               23444444422      33


Q ss_pred             CCCCCceeeeeecccc
Q 038698          262 PYPSRAFDMAQCSRCL  277 (283)
Q Consensus       262 PFpd~SFDlV~cs~~L  277 (283)
                      +.....||+|-|.-++
T Consensus       140 ~~~~~~FDvVScQFal  155 (331)
T PF03291_consen  140 PPRSRKFDVVSCQFAL  155 (331)
T ss_dssp             SSTTS-EEEEEEES-G
T ss_pred             cccCCCcceeehHHHH
Confidence            4445699999998876

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.47  E-value=0.00021  Score=69.32  Aligned_cols=98  Identities=11%  Similarity=0.086  Sum_probs=60.8

Q ss_pred             CCeeeeCCCCCCCCCchhHH----HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH
Q 038698          170 GNVFKFPGGGTMFPQGADAY----IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL  245 (283)
Q Consensus       170 ~~~~~Fpgggt~F~~ga~~Y----id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~  245 (283)
                      |-+|.++.  ..|.+-...-    .+.+.+++....+  .+|||+|||+|.++..|+.++.   .+.++|+++.+++.|+
T Consensus       200 g~~~~~~~--~~F~Q~n~~~~~~l~~~~~~~l~~~~~--~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~  272 (374)
T TIGR02085       200 DVPLVIRP--QSFFQTNPKVAAQLYATARQWVREIPV--TQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQ  272 (374)
T ss_pred             CEEEEECC--CccccCCHHHHHHHHHHHHHHHHhcCC--CEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHH
Confidence            43566654  3465433332    3444444432223  5899999999999999987642   4678888888888776


Q ss_pred             Hc----CC-CeEEEeccccCC-CCCCCceeeeeec
Q 038698          246 ER----GV-PAVIGVLGTIHL-PYPSRAFDMAQCS  274 (283)
Q Consensus       246 er----g~-~a~~~v~da~rL-PFpd~SFDlV~cs  274 (283)
                      +.    ++ .+.+..+++..+ +-..+.||+|+..
T Consensus       273 ~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D  307 (374)
T TIGR02085       273 QSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN  307 (374)
T ss_pred             HHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence            42    44 344655665442 2122469999864

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PLN02366 spermidine synthase

Probab=97.46  E-value=0.00061  Score=64.94  Aligned_cols=122  Identities=8%  Similarity=0.055  Sum_probs=68.5

Q ss_pred             ceeeecccCCchhhhhhhhc--CceeecCCeeeeCCCCCCCCCc-hhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHH
Q 038698          144 DYVHYANVPHKSLTVEKAVQ--NWVQFQGNVFKFPGGGTMFPQG-ADAYIDELASVIPIKDGSVRTALDTGCGVASWGAY  220 (283)
Q Consensus       144 ~~~W~~n~p~~~L~~~k~~q--~w~~~~~~~~~Fpgggt~F~~g-a~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~  220 (283)
                      .++....-+|.++...+...  +++.++|. +       ++... .-.|.+.|..+.-.....+++|||||||.|..+..
T Consensus        37 ~~l~~~~s~yQ~i~v~~~~~~g~~L~lDg~-~-------q~~~~de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~re  108 (308)
T PLN02366         37 KVLFQGKSDFQDVLVFESATYGKVLVLDGV-I-------QLTERDECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLRE  108 (308)
T ss_pred             eEEEeccCCCeeEEEEEcCCCceEEEECCE-e-------eecCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHH
Confidence            45555666777655433222  33444433 2       22222 23566655543111122457999999999999999


Q ss_pred             HhhcCCeeEeeccccChHHHHHHHHHcC---------CCeEEEeccccC-C-CCCCCceeeeeec
Q 038698          221 LLKRNVLTMSFAPRDNHEAQVQFALERG---------VPAVIGVLGTIH-L-PYPSRAFDMAQCS  274 (283)
Q Consensus       221 L~~r~v~~~sla~~D~s~a~vq~A~erg---------~~a~~~v~da~r-L-PFpd~SFDlV~cs  274 (283)
                      |+++. ....+..+|+++..++.|++.-         ....+..+|+.. + ..+++.||+|++-
T Consensus       109 llk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D  172 (308)
T PLN02366        109 IARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVD  172 (308)
T ss_pred             HHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEc
Confidence            98862 2224556677788888876531         123344445321 1 1246789999984

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.00038  Score=63.33  Aligned_cols=83  Identities=14%  Similarity=0.183  Sum_probs=55.7

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCCC
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLPY  263 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLPF  263 (283)
                      -.-.+.+.|.++.|  .+||+||||+|+.+|.|++..-.+   ..++..++..++|+++    |. ++.+..+|. ..=+
T Consensus        60 ~vA~m~~~L~~~~g--~~VLEIGtGsGY~aAvla~l~~~V---~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG-~~G~  133 (209)
T COG2518          60 MVARMLQLLELKPG--DRVLEIGTGSGYQAAVLARLVGRV---VSIERIEELAEQARRNLETLGYENVTVRHGDG-SKGW  133 (209)
T ss_pred             HHHHHHHHhCCCCC--CeEEEECCCchHHHHHHHHHhCeE---EEEEEcHHHHHHHHHHHHHcCCCceEEEECCc-ccCC
Confidence            45567777877766  699999999999999999863333   3345555666666432    55 444555553 3344


Q ss_pred             CC-Cceeeeeecccc
Q 038698          264 PS-RAFDMAQCSRCL  277 (283)
Q Consensus       264 pd-~SFDlV~cs~~L  277 (283)
                      +. .-||.|+.+.+.
T Consensus       134 ~~~aPyD~I~Vtaaa  148 (209)
T COG2518         134 PEEAPYDRIIVTAAA  148 (209)
T ss_pred             CCCCCcCEEEEeecc
Confidence            44 789999987653

>TIGR00417 speE spermidine synthase

Probab=97.44  E-value=0.00045  Score=63.91  Aligned_cols=88  Identities=15%  Similarity=0.093  Sum_probs=53.2

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---------CCeEEEeccc
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---------VPAVIGVLGT  258 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---------~~a~~~v~da  258 (283)
                      .|.+.|..+--.....+++|||||||+|.++..++++.. ...+..+|++++.++.|.+.-         ....+...|+
T Consensus        57 ~y~e~l~~~~l~~~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~  135 (270)
T TIGR00417        57 IYHEMIAHVPLFTHPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDG  135 (270)
T ss_pred             HHHHHhhhhHhhcCCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECch
Confidence            466555443212223457999999999999988877641 234567788888887776531         1122333343


Q ss_pred             cC-CCCCCCceeeeeeccc
Q 038698          259 IH-LPYPSRAFDMAQCSRC  276 (283)
Q Consensus       259 ~r-LPFpd~SFDlV~cs~~  276 (283)
                      .+ |.-.+++||+|++...
T Consensus       136 ~~~l~~~~~~yDvIi~D~~  154 (270)
T TIGR00417       136 FKFLADTENTFDVIIVDST  154 (270)
T ss_pred             HHHHHhCCCCccEEEEeCC
Confidence            21 2233579999998543

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.37  E-value=0.00056  Score=50.37  Aligned_cols=71  Identities=24%  Similarity=0.323  Sum_probs=44.5

Q ss_pred             EeecCCCccHHH--HHHhhcCCeeEeeccccChHHHHHHHHHcC--C--C-eEEEeccccC--CCCCC-Cceeeeeeccc
Q 038698          207 ALDTGCGVASWG--AYLLKRNVLTMSFAPRDNHEAQVQFALERG--V--P-AVIGVLGTIH--LPYPS-RAFDMAQCSRC  276 (283)
Q Consensus       207 VLDVGCGtGsfa--a~L~~r~v~~~sla~~D~s~a~vq~A~erg--~--~-a~~~v~da~r--LPFpd-~SFDlV~cs~~  276 (283)
                      +||+|||+|...  ..+....   ..+.+.|.+..++..+....  .  . ..+...+...  +||.+ ..||++ +...
T Consensus        52 ~ld~~~g~g~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~  127 (257)
T COG0500          52 VLDIGCGTGRLALLARLGGRG---AYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL  127 (257)
T ss_pred             eEEecCCcCHHHHHHHhCCCC---ceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence            999999999854  3333322   12344788887776644332  1  1 2344445554  89998 599999 7777


Q ss_pred             ccccc
Q 038698          277 LIPWT  281 (283)
Q Consensus       277 Li~W~  281 (283)
                      ...|.
T Consensus       128 ~~~~~  132 (257)
T COG0500         128 VLHLL  132 (257)
T ss_pred             ehhcC
Confidence            65543

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.19  E-value=0.00052  Score=62.78  Aligned_cols=58  Identities=17%  Similarity=0.270  Sum_probs=30.2

Q ss_pred             cEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                      .+|-|+|||++.++..+.+. .|...|+...             +.  .+...|+..+|++|++.|+|++...|
T Consensus        74 ~viaD~GCGdA~la~~~~~~~~V~SfDLva~-------------n~--~Vtacdia~vPL~~~svDv~VfcLSL  132 (219)
T PF05148_consen   74 LVIADFGCGDAKLAKAVPNKHKVHSFDLVAP-------------NP--RVTACDIANVPLEDESVDVAVFCLSL  132 (219)
T ss_dssp             S-EEEES-TT-HHHHH--S---EEEEESS-S-------------ST--TEEES-TTS-S--TT-EEEEEEES--
T ss_pred             EEEEECCCchHHHHHhcccCceEEEeeccCC-------------CC--CEEEecCccCcCCCCceeEEEEEhhh
Confidence            68999999999999776542 2333333221             11  23445889999999999999997766

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.12  E-value=0.0016  Score=58.43  Aligned_cols=84  Identities=18%  Similarity=0.173  Sum_probs=54.7

Q ss_pred             HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceee
Q 038698          191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDM  270 (283)
Q Consensus       191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDl  270 (283)
                      +.+.+....  .+.++|||||+|.|.++..++++... +.+.-.|+ +..++.+.+ .-...+..+|.. =|+|.  +|+
T Consensus        90 ~~~~~~~d~--~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~  161 (241)
T PF00891_consen   90 DILLEAFDF--SGFKTVVDVGGGSGHFAIALARAYPN-LRATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADV  161 (241)
T ss_dssp             HHHHHHSTT--TTSSEEEEET-TTSHHHHHHHHHSTT-SEEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESE
T ss_pred             hhhhccccc--cCccEEEeccCcchHHHHHHHHHCCC-Ccceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccc
Confidence            444455554  34579999999999999999886332 13344565 445666665 333555555665 67887  999


Q ss_pred             eeeccccccccc
Q 038698          271 AQCSRCLIPWTS  282 (283)
Q Consensus       271 V~cs~~Li~W~~  282 (283)
                      |+.+++|-.|..
T Consensus       162 ~~l~~vLh~~~d  173 (241)
T PF00891_consen  162 YLLRHVLHDWSD  173 (241)
T ss_dssp             EEEESSGGGS-H
T ss_pred             eeeehhhhhcch
Confidence            999999998863

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=97.09  E-value=0.0015  Score=57.13  Aligned_cols=81  Identities=22%  Similarity=0.248  Sum_probs=51.4

Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHH--HHhhcCCe------eEeeccccChHHHHHHHHHc----CCC--eEEEecc
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGA--YLLKRNVL------TMSFAPRDNHEAQVQFALER----GVP--AVIGVLG  257 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa--~L~~r~v~------~~sla~~D~s~a~vq~A~er----g~~--a~~~v~d  257 (283)
                      .|..+.....+  .++||-=||+|++..  .|...++.      ...+.+.|+++.+++.|++.    |+.  ..+...|
T Consensus        19 ~ll~la~~~~~--~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D   96 (179)
T PF01170_consen   19 ALLNLAGWRPG--DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWD   96 (179)
T ss_dssp             HHHHHTT--TT--S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--
T ss_pred             HHHHHhCCCCC--CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecc
Confidence            45555555444  689999999999873  23333332      12256889999888877532    543  4566778


Q ss_pred             ccCCCCCCCceeeeeec
Q 038698          258 TIHLPYPSRAFDMAQCS  274 (283)
Q Consensus       258 a~rLPFpd~SFDlV~cs  274 (283)
                      +.+||+.++++|.|+|.
T Consensus        97 ~~~l~~~~~~~d~Ivtn  113 (179)
T PF01170_consen   97 ARELPLPDGSVDAIVTN  113 (179)
T ss_dssp             GGGGGGTTSBSCEEEEE
T ss_pred             hhhcccccCCCCEEEEC
Confidence            99999999999999986

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.05  E-value=0.0016  Score=68.19  Aligned_cols=68  Identities=12%  Similarity=0.047  Sum_probs=48.1

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC---eEEEeccccC-CCCCCCceeeeeec
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP---AVIGVLGTIH-LPYPSRAFDMAQCS  274 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~---a~~~v~da~r-LPFpd~SFDlV~cs  274 (283)
                      ++|||+|||+|.|+..++..+..  .+..+|+++.+++.|.+.    ++.   ..+..+|+.. |.-..++||+|++.
T Consensus       540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD  615 (702)
T PRK11783        540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID  615 (702)
T ss_pred             CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence            68999999999999999987542  467789999888877643    443   3455556422 21115789999984

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=97.02  E-value=0.0012  Score=58.65  Aligned_cols=75  Identities=25%  Similarity=0.332  Sum_probs=47.0

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH----HcCCCe-EEEeccccC-CC--CCCCceeeeeeccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL----ERGVPA-VIGVLGTIH-LP--YPSRAFDMAQCSRC  276 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~----erg~~a-~~~v~da~r-LP--Fpd~SFDlV~cs~~  276 (283)
                      ..+||||||.|.|...|+.+... ..+.|+|+....+..|.    ++++++ .+..+++.. |+  ++++++|.|+-.--
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP   97 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP   97 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred             CeEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence            48999999999999999987543 24667777777665554    346654 455556555 33  57899999986433


Q ss_pred             ccccc
Q 038698          277 LIPWT  281 (283)
Q Consensus       277 Li~W~  281 (283)
                      = ||.
T Consensus        98 D-PWp  101 (195)
T PF02390_consen   98 D-PWP  101 (195)
T ss_dssp             -----
T ss_pred             C-CCc
Confidence            2 553

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=97.01  E-value=0.0024  Score=57.98  Aligned_cols=71  Identities=20%  Similarity=0.195  Sum_probs=52.4

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH-cCC-------C---------eEEEeccccCCCCCC-C
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE-RGV-------P---------AVIGVLGTIHLPYPS-R  266 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e-rg~-------~---------a~~~v~da~rLPFpd-~  266 (283)
                      .+||+.|||.|.-+.+|++++.   ++.++|+++..++.|.+ .+.       .         ..+.++|...|+-.+ +
T Consensus        39 ~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g  115 (218)
T PF05724_consen   39 GRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG  115 (218)
T ss_dssp             EEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred             CeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence            6899999999999999999864   56789999999988743 333       1         134566777776544 4


Q ss_pred             ceeeeeeccccc
Q 038698          267 AFDMAQCSRCLI  278 (283)
Q Consensus       267 SFDlV~cs~~Li  278 (283)
                      .||+|+=..+|+
T Consensus       116 ~fD~iyDr~~l~  127 (218)
T PF05724_consen  116 KFDLIYDRTFLC  127 (218)
T ss_dssp             SEEEEEECSSTT
T ss_pred             CceEEEEecccc
Confidence            899999887774

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=96.96  E-value=0.0033  Score=56.43  Aligned_cols=76  Identities=17%  Similarity=0.098  Sum_probs=43.7

Q ss_pred             HHhhCCCCCCCccEEeecCCCccHHHHHHhh--cCCeeEeeccccChHHH---HHHHHHc-CCCeE-EEecc-ccCCCCC
Q 038698          193 LASVIPIKDGSVRTALDTGCGVASWGAYLLK--RNVLTMSFAPRDNHEAQ---VQFALER-GVPAV-IGVLG-TIHLPYP  264 (283)
Q Consensus       193 I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~--r~v~~~sla~~D~s~a~---vq~A~er-g~~a~-~~v~d-a~rLPFp  264 (283)
                      ....|.+.+|  .+++|||||||+.+..++.  ....+   ..+|-.++.   ++..+++ |+++. +..++ -+.|+=.
T Consensus        26 ~ls~L~~~~g--~~l~DIGaGtGsi~iE~a~~~p~~~v---~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~  100 (187)
T COG2242          26 TLSKLRPRPG--DRLWDIGAGTGSITIEWALAGPSGRV---IAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL  100 (187)
T ss_pred             HHHhhCCCCC--CEEEEeCCCccHHHHHHHHhCCCceE---EEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC
Confidence            3344555556  5999999999999988773  22333   344444444   3444444 76544 33333 2344422


Q ss_pred             CCceeeeeec
Q 038698          265 SRAFDMAQCS  274 (283)
Q Consensus       265 d~SFDlV~cs  274 (283)
                      + +||.|+-.
T Consensus       101 ~-~~daiFIG  109 (187)
T COG2242         101 P-SPDAIFIG  109 (187)
T ss_pred             C-CCCEEEEC
Confidence            2 79988754

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=96.85  E-value=0.0025  Score=58.04  Aligned_cols=83  Identities=16%  Similarity=0.117  Sum_probs=49.9

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIH  260 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~r  260 (283)
                      ..++..+.++.+     .++|||+|||+|+-+..|+..-.....+..+|.+++.++.|++.    |+.  ..+..+++..
T Consensus        57 g~~L~~l~~~~~-----~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~  131 (234)
T PLN02781         57 GLFLSMLVKIMN-----AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALS  131 (234)
T ss_pred             HHHHHHHHHHhC-----CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHH
Confidence            445555555543     36899999999987666665311122466678888777766532    543  3344444322


Q ss_pred             -CC-----CCCCceeeeeec
Q 038698          261 -LP-----YPSRAFDMAQCS  274 (283)
Q Consensus       261 -LP-----Fpd~SFDlV~cs  274 (283)
                       |+     .++.+||+|+.-
T Consensus       132 ~L~~l~~~~~~~~fD~VfiD  151 (234)
T PLN02781        132 ALDQLLNNDPKPEFDFAFVD  151 (234)
T ss_pred             HHHHHHhCCCCCCCCEEEEC
Confidence             22     235789999864

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=96.81  E-value=0.0065  Score=59.32  Aligned_cols=67  Identities=18%  Similarity=0.249  Sum_probs=41.7

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeeccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRC  276 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~  276 (283)
                      .++||+||++|.|+.+|++++..   +.++|..+  +.-.+.....+.....+..+..-+.+.+|+|+|-.+
T Consensus       213 ~~vlDLGAsPGGWT~~L~~rG~~---V~AVD~g~--l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv  279 (357)
T PRK11760        213 MRAVDLGAAPGGWTYQLVRRGMF---VTAVDNGP--MAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV  279 (357)
T ss_pred             CEEEEeCCCCcHHHHHHHHcCCE---EEEEechh--cCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence            68999999999999999999753   34455322  111122222344444454443223778999999644

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=96.80  E-value=0.0049  Score=58.66  Aligned_cols=80  Identities=21%  Similarity=0.232  Sum_probs=50.4

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc--CCC--eEEEeccccCCCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER--GVP--AVIGVLGTIHLPYPS  265 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er--g~~--a~~~v~da~rLPFpd  265 (283)
                      +++|.+-.+++.+  .+||.||-|||.++..|++.+.+++.   .++.+.++..-.+|  |.+  ..+.++....|--+.
T Consensus        47 ~~~I~~ka~~k~t--D~VLEvGPGTGnLT~~lLe~~kkVvA---~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~  121 (315)
T KOG0820|consen   47 IDQIVEKADLKPT--DVVLEVGPGTGNLTVKLLEAGKKVVA---VEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL  121 (315)
T ss_pred             HHHHHhccCCCCC--CEEEEeCCCCCHHHHHHHHhcCeEEE---EecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence            6777777777554  79999999999999999998655432   33444554443444  544  334433333333333


Q ss_pred             Cceeeeeec
Q 038698          266 RAFDMAQCS  274 (283)
Q Consensus       266 ~SFDlV~cs  274 (283)
                      -.||.++++
T Consensus       122 P~fd~cVsN  130 (315)
T KOG0820|consen  122 PRFDGCVSN  130 (315)
T ss_pred             cccceeecc
Confidence            458888774

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=96.78  E-value=0.0046  Score=58.56  Aligned_cols=101  Identities=14%  Similarity=0.093  Sum_probs=65.2

Q ss_pred             CCCCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCcc----HHHHHHhhcC---CeeEeeccccChHHHHHHHHHc---
Q 038698          178 GGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVA----SWGAYLLKRN---VLTMSFAPRDNHEAQVQFALER---  247 (283)
Q Consensus       178 ggt~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtG----sfaa~L~~r~---v~~~sla~~D~s~a~vq~A~er---  247 (283)
                      +.|.|++...++ +.|.+.+... +..-+|+..||.||    |++..|.+..   ...+.|.+.|+++..++.|++-   
T Consensus        92 neT~FFRd~~~f-~~L~~~~~~~-~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~  169 (287)
T PRK10611         92 NLTAFFREAHHF-PILAEHARRR-SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYR  169 (287)
T ss_pred             CCCCccCCcHHH-HHHHHHHHhc-CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCC
Confidence            468888887776 3343333222 22358999999999    5666666631   1135688899999999888532   


Q ss_pred             -----CCC----------------------------eEEEeccccCCCCC-CCceeeeeeccccccc
Q 038698          248 -----GVP----------------------------AVIGVLGTIHLPYP-SRAFDMAQCSRCLIPW  280 (283)
Q Consensus       248 -----g~~----------------------------a~~~v~da~rLPFp-d~SFDlV~cs~~Li~W  280 (283)
                           +++                            +.|...+....||+ .+.||+|+|..+||..
T Consensus       170 ~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF  236 (287)
T PRK10611        170 QEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF  236 (287)
T ss_pred             HHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC
Confidence                 110                            12334454454554 6899999999998875

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.75  E-value=0.0057  Score=54.81  Aligned_cols=102  Identities=22%  Similarity=0.343  Sum_probs=52.7

Q ss_pred             CCCCCchhHHHHHHHhhCC----C-CCCCccEEeecCCCcc----HHHHHHhh--cCCe--eEeeccccChHHHHHHHHH
Q 038698          180 TMFPQGADAYIDELASVIP----I-KDGSVRTALDTGCGVA----SWGAYLLK--RNVL--TMSFAPRDNHEAQVQFALE  246 (283)
Q Consensus       180 t~F~~ga~~Yid~I~~~l~----~-~~g~~r~VLDVGCGtG----sfaa~L~~--r~v~--~~sla~~D~s~a~vq~A~e  246 (283)
                      |.|.+...++-..-..++|    . ..+..-+|+.+||++|    |++..|.+  .+..  .+.|.+.|+++..++.|++
T Consensus         3 T~FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~   82 (196)
T PF01739_consen    3 TYFFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA   82 (196)
T ss_dssp             --TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred             CcccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence            5677777666333333332    1 2235678999999999    56666666  2211  4678899999999988742


Q ss_pred             --------cCCC-------------------------eEEEeccccCCCCCCCceeeeeecccccccc
Q 038698          247 --------RGVP-------------------------AVIGVLGTIHLPYPSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       247 --------rg~~-------------------------a~~~v~da~rLPFpd~SFDlV~cs~~Li~W~  281 (283)
                              ++++                         +.|...+....+-+.+.||+|+|.-+||-..
T Consensus        83 G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~  150 (196)
T PF01739_consen   83 GIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFD  150 (196)
T ss_dssp             TEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-
T ss_pred             CCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeC
Confidence                    1221                         1233334344455778999999999998653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=96.71  E-value=0.0061  Score=60.01  Aligned_cols=68  Identities=12%  Similarity=0.087  Sum_probs=45.9

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC---eEEEeccccCC----CCCCCceeeeee
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP---AVIGVLGTIHL----PYPSRAFDMAQC  273 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~---a~~~v~da~rL----PFpd~SFDlV~c  273 (283)
                      .+|||+|||+|.|+..++..+.  ..+..+|+++.+++.|.+.    ++.   ..+..+|+...    .-..++||+|++
T Consensus       222 ~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil  299 (396)
T PRK15128        222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM  299 (396)
T ss_pred             CeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence            6899999999999876554432  2456788888888877542    442   34555564332    123568999998


Q ss_pred             c
Q 038698          274 S  274 (283)
Q Consensus       274 s  274 (283)
                      .
T Consensus       300 D  300 (396)
T PRK15128        300 D  300 (396)
T ss_pred             C
Confidence            5

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=96.69  E-value=0.005  Score=58.69  Aligned_cols=89  Identities=16%  Similarity=0.232  Sum_probs=56.4

Q ss_pred             hhHHHHHHHhhCCCC-CCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEec----
Q 038698          186 ADAYIDELASVIPIK-DGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVL----  256 (283)
Q Consensus       186 a~~Yid~I~~~l~~~-~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~----  256 (283)
                      .+.+.+.+.+.+... .-....+||+|||+|..+..|+..-. -..+..+|.+++++..|.|.    ++...+.+.    
T Consensus       130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m  208 (328)
T KOG2904|consen  130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM  208 (328)
T ss_pred             HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc
Confidence            456666666666531 11124799999999998877776311 22356679999888877542    232222221    


Q ss_pred             --c-ccCCCCCCCceeeeeecc
Q 038698          257 --G-TIHLPYPSRAFDMAQCSR  275 (283)
Q Consensus       257 --d-a~rLPFpd~SFDlV~cs~  275 (283)
                        + ....|..++..|+++|+-
T Consensus       209 e~d~~~~~~l~~~~~dllvsNP  230 (328)
T KOG2904|consen  209 ESDASDEHPLLEGKIDLLVSNP  230 (328)
T ss_pred             ccccccccccccCceeEEecCC
Confidence              2 345567889999999974

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=96.65  E-value=0.0054  Score=59.66  Aligned_cols=86  Identities=17%  Similarity=0.257  Sum_probs=46.6

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCe-eEeeccccChHHHHHHHHHcCCCeEEEe--ccccCCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVL-TMSFAPRDNHEAQVQFALERGVPAVIGV--LGTIHLPY  263 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~-~~sla~~D~s~a~vq~A~erg~~a~~~v--~da~rLPF  263 (283)
                      .+|-+.|.+-=.+-.+  ++|||||||||-++..=++.+.. ++.+...++..-..+.+...+...++.+  +.++.+-+
T Consensus        46 ~aYr~~i~~n~~lf~d--K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~L  123 (346)
T KOG1499|consen   46 LAYRNAILQNKHLFKD--KTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIEL  123 (346)
T ss_pred             HHHHHHHhcchhhcCC--CEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEec
Confidence            5565555433332223  79999999999877655554322 2222222333222334444455544433  23444444


Q ss_pred             CCCceeeeeec
Q 038698          264 PSRAFDMAQCS  274 (283)
Q Consensus       264 pd~SFDlV~cs  274 (283)
                      |-...|+|++.
T Consensus       124 P~eKVDiIvSE  134 (346)
T KOG1499|consen  124 PVEKVDIIVSE  134 (346)
T ss_pred             CccceeEEeeh
Confidence            48899999884

>PLN02672 methionine S-methyltransferase

Probab=96.56  E-value=0.0026  Score=69.76  Aligned_cols=71  Identities=11%  Similarity=0.008  Sum_probs=47.5

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-----------------CeEEEeccccCCCC
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-----------------PAVIGVLGTIHLPY  263 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-----------------~a~~~v~da~rLPF  263 (283)
                      .+|||+|||+|.++..|+++... ..+.+.|+++++++.|++.    ++                 .+.+...|... ++
T Consensus       120 ~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~-~~  197 (1082)
T PLN02672        120 KTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLG-YC  197 (1082)
T ss_pred             CEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhh-hc
Confidence            58999999999999998876322 2567889999988877532    11                 13444445433 23


Q ss_pred             CC--Cceeeeeecccc
Q 038698          264 PS--RAFDMAQCSRCL  277 (283)
Q Consensus       264 pd--~SFDlV~cs~~L  277 (283)
                      .+  ..||+|+|+-=-
T Consensus       198 ~~~~~~fDlIVSNPPY  213 (1082)
T PLN02672        198 RDNNIELDRIVGCIPQ  213 (1082)
T ss_pred             cccCCceEEEEECCCc
Confidence            33  369999997533

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=96.56  E-value=0.0026  Score=60.20  Aligned_cols=71  Identities=18%  Similarity=0.247  Sum_probs=46.4

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCcee
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFD  269 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFD  269 (283)
                      +|.|.+.|....+ ...|-|+|||++-++..- ...|..+|+...+          +     .+...|+.++|.+|+|.|
T Consensus       168 ld~ii~~ik~r~~-~~vIaD~GCGEakiA~~~-~~kV~SfDL~a~~----------~-----~V~~cDm~~vPl~d~svD  230 (325)
T KOG3045|consen  168 LDVIIRKIKRRPK-NIVIADFGCGEAKIASSE-RHKVHSFDLVAVN----------E-----RVIACDMRNVPLEDESVD  230 (325)
T ss_pred             HHHHHHHHHhCcC-ceEEEecccchhhhhhcc-ccceeeeeeecCC----------C-----ceeeccccCCcCccCccc
Confidence            5666666665443 367999999999887511 1245555544432          1     123347889999999999


Q ss_pred             eeeecccc
Q 038698          270 MAQCSRCL  277 (283)
Q Consensus       270 lV~cs~~L  277 (283)
                      ++++-..|
T Consensus       231 vaV~CLSL  238 (325)
T KOG3045|consen  231 VAVFCLSL  238 (325)
T ss_pred             EEEeeHhh
Confidence            99885544

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=96.56  E-value=0.0023  Score=62.14  Aligned_cols=71  Identities=23%  Similarity=0.244  Sum_probs=50.4

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC-----------CCeEEEecc------ccCCCCCCCc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG-----------VPAVIGVLG------TIHLPYPSRA  267 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg-----------~~a~~~v~d------a~rLPFpd~S  267 (283)
                      +.+||+|||-|.-+...-..++.  .+.++|+++..|+.|.+|.           .++.+..+|      ...++|+|-+
T Consensus       119 ~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~  196 (389)
T KOG1975|consen  119 DDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR  196 (389)
T ss_pred             cccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence            67999999988654433333332  4678899998888887552           124454454      4678999999


Q ss_pred             eeeeeecccc
Q 038698          268 FDMAQCSRCL  277 (283)
Q Consensus       268 FDlV~cs~~L  277 (283)
                      ||+|-|.-|+
T Consensus       197 fDivScQF~~  206 (389)
T KOG1975|consen  197 FDIVSCQFAF  206 (389)
T ss_pred             cceeeeeeeE
Confidence            9999998876

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=96.43  E-value=0.0046  Score=56.75  Aligned_cols=76  Identities=18%  Similarity=0.224  Sum_probs=53.3

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHH----HHcCC-CeEEEeccccCC-C--CCCCceeeeeeccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFA----LERGV-PAVIGVLGTIHL-P--YPSRAFDMAQCSRC  276 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A----~erg~-~a~~~v~da~rL-P--Fpd~SFDlV~cs~~  276 (283)
                      .++||||||.|.+...|++++... .+.|+++....+..|    .+.++ ++.+...|+..+ +  ++++|.|-|+-.--
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~-nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP  128 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEK-NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP  128 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCC-CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence            489999999999999999987654 566777776665544    45588 666666664443 2  46669999876433


Q ss_pred             cccccc
Q 038698          277 LIPWTS  282 (283)
Q Consensus       277 Li~W~~  282 (283)
                       .||+.
T Consensus       129 -DPWpK  133 (227)
T COG0220         129 -DPWPK  133 (227)
T ss_pred             -CCCCC
Confidence             36654

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=96.43  E-value=0.014  Score=54.73  Aligned_cols=81  Identities=17%  Similarity=0.177  Sum_probs=55.6

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---CCeEEEeccccCCCCCC
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---VPAVIGVLGTIHLPYPS  265 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---~~a~~~v~da~rLPFpd  265 (283)
                      .++.|.+.+....+  .+||+||+|.|.++..|+++...   +..+++++..++.-.++-   -+..+..+|+-..+|++
T Consensus        18 v~~kIv~~a~~~~~--d~VlEIGpG~GaLT~~Ll~~~~~---v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~   92 (259)
T COG0030          18 VIDKIVEAANISPG--DNVLEIGPGLGALTEPLLERAAR---VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPS   92 (259)
T ss_pred             HHHHHHHhcCCCCC--CeEEEECCCCCHHHHHHHhhcCe---EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchh
Confidence            48888888887553  79999999999999999998543   233444555554444432   22345556888888886


Q ss_pred             C-ceeeeeec
Q 038698          266 R-AFDMAQCS  274 (283)
Q Consensus       266 ~-SFDlV~cs  274 (283)
                      . .++.|+++
T Consensus        93 l~~~~~vVaN  102 (259)
T COG0030          93 LAQPYKVVAN  102 (259)
T ss_pred             hcCCCEEEEc
Confidence            5 57777765

>TIGR00095 RNA methyltransferase, RsmD family

Probab=96.38  E-value=0.0093  Score=52.69  Aligned_cols=99  Identities=17%  Similarity=0.128  Sum_probs=58.1

Q ss_pred             CCeeeeCCCCCCCCCchhHHHHHHHhhCC-CCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH--
Q 038698          170 GNVFKFPGGGTMFPQGADAYIDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE--  246 (283)
Q Consensus       170 ~~~~~Fpgggt~F~~ga~~Yid~I~~~l~-~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e--  246 (283)
                      |-++..|.++...|.. +.-.+.+-.++. ...|  .++||++||+|+++..++.++..  .+..+|.++..++.+++  
T Consensus        18 g~~l~~p~~~~~rpt~-~~vrea~f~~l~~~~~g--~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~   92 (189)
T TIGR00095        18 GRLLKLPPGGSTRPTT-RVVRELFFNILRPEIQG--AHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENL   92 (189)
T ss_pred             CcccCCCCCCCCCCch-HHHHHHHHHHHHHhcCC--CEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHH
Confidence            4556667766666532 222334444443 1223  58999999999999999998753  35667777777665543  


Q ss_pred             --cCCC--eEEEeccc-cCCC-C-CCC-ceeeeee
Q 038698          247 --RGVP--AVIGVLGT-IHLP-Y-PSR-AFDMAQC  273 (283)
Q Consensus       247 --rg~~--a~~~v~da-~rLP-F-pd~-SFDlV~c  273 (283)
                        .+..  +.+...|+ ..|. + ... .||+|+.
T Consensus        93 ~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~  127 (189)
T TIGR00095        93 ALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL  127 (189)
T ss_pred             HHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence              2432  34444554 2222 2 122 4787764

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.36  E-value=0.0091  Score=55.73  Aligned_cols=84  Identities=23%  Similarity=0.198  Sum_probs=50.0

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc--CCCeE----E-EeccccCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER--GVPAV----I-GVLGTIHL  261 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er--g~~a~----~-~v~da~rL  261 (283)
                      +++|.+.++.  -.+++|||+|||+|+-.-...+. + ...++..+|.++.+++++..-  ..+..    . ...-.+.+
T Consensus        22 l~El~~r~p~--f~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~   98 (274)
T PF09243_consen   22 LSELRKRLPD--FRPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL   98 (274)
T ss_pred             HHHHHHhCcC--CCCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc
Confidence            5566655543  24689999999999644333331 1 233567789999998877532  22111    1 11112345


Q ss_pred             CCCCCceeeeeeccccc
Q 038698          262 PYPSRAFDMAQCSRCLI  278 (283)
Q Consensus       262 PFpd~SFDlV~cs~~Li  278 (283)
                      ++...  |+|+++.+|.
T Consensus        99 ~~~~~--DLvi~s~~L~  113 (274)
T PF09243_consen   99 PFPPD--DLVIASYVLN  113 (274)
T ss_pred             cCCCC--cEEEEehhhh
Confidence            55444  9999999884

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.34  E-value=0.004  Score=52.08  Aligned_cols=59  Identities=19%  Similarity=0.182  Sum_probs=37.1

Q ss_pred             hHHHHHHHhhCCC--CCCCccEEeecCCCccHHHHHHhh-----cCCeeEeeccccChHHHHHHHHHc
Q 038698          187 DAYIDELASVIPI--KDGSVRTALDTGCGVASWGAYLLK-----RNVLTMSFAPRDNHEAQVQFALER  247 (283)
Q Consensus       187 ~~Yid~I~~~l~~--~~g~~r~VLDVGCGtGsfaa~L~~-----r~v~~~sla~~D~s~a~vq~A~er  247 (283)
                      ..+.+.|.+++..  ...+..+|+|+|||-|+++..|..     .  ....+.++|..+..++.|.++
T Consensus         7 ~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~   72 (141)
T PF13679_consen    7 ERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKR   72 (141)
T ss_pred             HHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHH
Confidence            3344444444432  123457899999999999998888     3  233455667766666655443

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=96.33  E-value=0.0086  Score=51.43  Aligned_cols=41  Identities=29%  Similarity=0.408  Sum_probs=31.2

Q ss_pred             chhHHHHHHHhhCC-CCCCCccEEeecCCCccHHHHHHhhcC
Q 038698          185 GADAYIDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKRN  225 (283)
Q Consensus       185 ga~~Yid~I~~~l~-~~~g~~r~VLDVGCGtGsfaa~L~~r~  225 (283)
                      .|...+.+|.+..+ ...+...++||+||++|.|+.+++++.
T Consensus         4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~   45 (181)
T PF01728_consen    4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRG   45 (181)
T ss_dssp             THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTST
T ss_pred             HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecc
Confidence            34455777888887 445556899999999999999999986

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=96.25  E-value=0.0041  Score=60.97  Aligned_cols=68  Identities=16%  Similarity=0.135  Sum_probs=46.1

Q ss_pred             cEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCCCCceeeeeec
Q 038698          205 RTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYPSRAFDMAQCS  274 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFpd~SFDlV~cs  274 (283)
                      .+|||++||+|.++..++.+ ++  ..+..+|+++..++.+.+.    ++. ..+...|+..+....+.||+|+..
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD  132 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID  132 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC
Confidence            47999999999999998764 32  2466788888887776532    443 225555665543214679999864

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=96.17  E-value=0.016  Score=50.31  Aligned_cols=75  Identities=16%  Similarity=0.141  Sum_probs=33.9

Q ss_pred             ccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHcCC-----CeEEEecc-ccCC--C-CCCCceeeeee
Q 038698          204 VRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALERGV-----PAVIGVLG-TIHL--P-YPSRAFDMAQC  273 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~erg~-----~a~~~v~d-a~rL--P-Fpd~SFDlV~c  273 (283)
                      ..+||++|||+|..+..++.. +...+-++-.+.....++...+++.     .+.+..++ .+.+  . +..+.||+|++
T Consensus        46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Ila  125 (173)
T PF10294_consen   46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILA  125 (173)
T ss_dssp             TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEE
T ss_pred             CceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEE
Confidence            379999999999777666655 2211212222222233333333321     12233222 1111  1 24568999999


Q ss_pred             ccccc
Q 038698          274 SRCLI  278 (283)
Q Consensus       274 s~~Li  278 (283)
                      +.|+-
T Consensus       126 sDv~Y  130 (173)
T PF10294_consen  126 SDVLY  130 (173)
T ss_dssp             ES--S
T ss_pred             ecccc
Confidence            99983

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=96.15  E-value=0.012  Score=55.15  Aligned_cols=89  Identities=21%  Similarity=0.273  Sum_probs=58.1

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcC-CeeEeeccccChHHHHHHHHHc------CCCeEEEecccc--C
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRN-VLTMSFAPRDNHEAQVQFALER------GVPAVIGVLGTI--H  260 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~-v~~~sla~~D~s~a~vq~A~er------g~~a~~~v~da~--r  260 (283)
                      .+...++++.......+||.||||+|...--|++.+ -..+.+..-|.++.++..-.++      ...+.+..++..  .
T Consensus        58 ~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~  137 (264)
T KOG2361|consen   58 LREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLK  137 (264)
T ss_pred             HHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhcc
Confidence            456667777544334489999999997665555532 2235667789998888776544      112333333333  3


Q ss_pred             CCCCCCceeeeeeccccc
Q 038698          261 LPYPSRAFDMAQCSRCLI  278 (283)
Q Consensus       261 LPFpd~SFDlV~cs~~Li  278 (283)
                      -|...+++|+|++--+|.
T Consensus       138 ~~~~~~svD~it~IFvLS  155 (264)
T KOG2361|consen  138 EPPEEGSVDIITLIFVLS  155 (264)
T ss_pred             CCCCcCccceEEEEEEEe
Confidence            478899999999877663

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=96.05  E-value=0.016  Score=56.48  Aligned_cols=80  Identities=20%  Similarity=0.285  Sum_probs=56.8

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH---c-CCCeE--EEeccccCCC
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE---R-GVPAV--IGVLGTIHLP  262 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e---r-g~~a~--~~v~da~rLP  262 (283)
                      +...+..+...+.|  ..|||==||||+++   .+.+..+....|.|+..+|++-|..   . ++.-.  +.+.|+..||
T Consensus       185 lAR~mVNLa~v~~G--~~vlDPFcGTGgiL---iEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp  259 (347)
T COG1041         185 LARAMVNLARVKRG--ELVLDPFCGTGGIL---IEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP  259 (347)
T ss_pred             HHHHHHHHhccccC--CEeecCcCCccHHH---HhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC
Confidence            34445555555555  58999999999985   3444445556788999999887753   2 34322  3444999999


Q ss_pred             CCCCceeeeee
Q 038698          263 YPSRAFDMAQC  273 (283)
Q Consensus       263 Fpd~SFDlV~c  273 (283)
                      |++++||.|.|
T Consensus       260 l~~~~vdaIat  270 (347)
T COG1041         260 LRDNSVDAIAT  270 (347)
T ss_pred             CCCCccceEEe
Confidence            99999999987

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=96.03  E-value=0.01  Score=57.26  Aligned_cols=67  Identities=12%  Similarity=0.061  Sum_probs=44.3

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEecccc
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTI  259 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~  259 (283)
                      ...++.+.+.+...+   .+|||+|||+|.|+..|.+..   ..+.++|.++.+++.|.+.    ++. +.+..+++.
T Consensus       184 ~~l~~~v~~~~~~~~---~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~  255 (353)
T TIGR02143       184 IKMLEWACEVTQGSK---GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAE  255 (353)
T ss_pred             HHHHHHHHHHhhcCC---CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHH
Confidence            344556666654322   259999999999999887753   2567888888888877653    442 345545543

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=95.99  E-value=0.0088  Score=55.68  Aligned_cols=85  Identities=15%  Similarity=0.212  Sum_probs=50.7

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc------CCeeEeeccccChHHHHHHHHH----cCCC---eEEEe
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR------NVLTMSFAPRDNHEAQVQFALE----RGVP---AVIGV  255 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r------~v~~~sla~~D~s~a~vq~A~e----rg~~---a~~~v  255 (283)
                      -.+.|.+++....+  .+|||-.||+|.|.....++      ......+.|.|+.+..+..|..    +++.   ..+..
T Consensus        34 i~~l~~~~~~~~~~--~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~  111 (311)
T PF02384_consen   34 IVDLMVKLLNPKKG--DSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQ  111 (311)
T ss_dssp             HHHHHHHHHTT-TT--EEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEE
T ss_pred             HHHHHHhhhhcccc--ceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccc
Confidence            36778888865444  68999999999998766552      1123467788998887776642    2332   12444


Q ss_pred             ccccCCCCC--CCceeeeeecc
Q 038698          256 LGTIHLPYP--SRAFDMAQCSR  275 (283)
Q Consensus       256 ~da~rLPFp--d~SFDlV~cs~  275 (283)
                      .++-..+..  ...||+|+++-
T Consensus       112 ~d~l~~~~~~~~~~~D~ii~NP  133 (311)
T PF02384_consen  112 GDSLENDKFIKNQKFDVIIGNP  133 (311)
T ss_dssp             S-TTTSHSCTST--EEEEEEE-
T ss_pred             cccccccccccccccccccCCC
Confidence            454444433  58999999874

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.97  E-value=0.017  Score=53.24  Aligned_cols=72  Identities=13%  Similarity=0.086  Sum_probs=46.8

Q ss_pred             cEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc---CC------------CeEEEeccccCCCCCCCce
Q 038698          205 RTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER---GV------------PAVIGVLGTIHLPYPSRAF  268 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er---g~------------~a~~~v~da~rLPFpd~SF  268 (283)
                      ...||||.|+|++++.+... +.++....|++..++.|+.+.+.   -+            ...+.++|....-=+.+.+
T Consensus        84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~Y  163 (237)
T KOG1661|consen   84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPY  163 (237)
T ss_pred             cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCc
Confidence            57999999999988765532 22232336777777766655321   11            1234466776666677889


Q ss_pred             eeeeeccc
Q 038698          269 DMAQCSRC  276 (283)
Q Consensus       269 DlV~cs~~  276 (283)
                      |.|||...
T Consensus       164 DaIhvGAa  171 (237)
T KOG1661|consen  164 DAIHVGAA  171 (237)
T ss_pred             ceEEEccC
Confidence            99999754

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=95.92  E-value=0.013  Score=55.85  Aligned_cols=84  Identities=15%  Similarity=0.055  Sum_probs=54.7

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---CCeEEEeccccCCC-C-C
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---VPAVIGVLGTIHLP-Y-P  264 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---~~a~~~v~da~rLP-F-p  264 (283)
                      ++++.+.+...+|  .++||.+||.|..+..|++..-....+.++|.++++++.|.++-   -...+...+...++ . +
T Consensus         8 l~Evl~~L~~~pg--~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~   85 (296)
T PRK00050          8 LDEVVDALAIKPD--GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA   85 (296)
T ss_pred             HHHHHHhhCCCCC--CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence            4566666665444  48999999999999999987322235788999999999987652   12333333333221 1 1


Q ss_pred             CC--ceeeeeecc
Q 038698          265 SR--AFDMAQCSR  275 (283)
Q Consensus       265 d~--SFDlV~cs~  275 (283)
                      ++  +||.|++-.
T Consensus        86 ~~~~~vDgIl~DL   98 (296)
T PRK00050         86 EGLGKVDGILLDL   98 (296)
T ss_pred             cCCCccCEEEECC
Confidence            12  788887643

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=95.89  E-value=0.022  Score=53.64  Aligned_cols=69  Identities=14%  Similarity=0.111  Sum_probs=46.4

Q ss_pred             CccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeeccccc
Q 038698          203 SVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLI  278 (283)
Q Consensus       203 ~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~Li  278 (283)
                      ...++||||.|.|.-+..|+..--   .+..-+.|.-|...-.+||....    +.....=.+..||+|.|--+|.
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~kg~~vl----~~~~w~~~~~~fDvIscLNvLD  162 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSKKGFTVL----DIDDWQQTDFKFDVISCLNVLD  162 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHhCCCeEE----ehhhhhccCCceEEEeehhhhh
Confidence            456899999999999999987411   23334667777666667786432    2222322456899999987764

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=95.85  E-value=0.02  Score=51.27  Aligned_cols=85  Identities=20%  Similarity=0.098  Sum_probs=60.7

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCC-----CC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLP-----YP  264 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLP-----Fp  264 (283)
                      .+.|...+..+.|  .-||.+|-|||-++..++++++.--++..++.+.+-+..-.++...+.+..+|+..|-     ++
T Consensus        37 A~~M~s~I~pesg--lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~  114 (194)
T COG3963          37 ARKMASVIDPESG--LPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHK  114 (194)
T ss_pred             HHHHHhccCcccC--CeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcC
Confidence            5667777766544  6799999999999999999987766777777777654444444333334445555554     78


Q ss_pred             CCceeeeeeccc
Q 038698          265 SRAFDMAQCSRC  276 (283)
Q Consensus       265 d~SFDlV~cs~~  276 (283)
                      +.-||.|+|..=
T Consensus       115 gq~~D~viS~lP  126 (194)
T COG3963         115 GQFFDSVISGLP  126 (194)
T ss_pred             CCeeeeEEeccc
Confidence            999999999653

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=95.81  E-value=0.028  Score=52.68  Aligned_cols=85  Identities=18%  Similarity=0.174  Sum_probs=57.0

Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCCCCCC
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLPYPS  265 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLPFpd  265 (283)
                      .|...+.+..|  .+|||.|.|+|.++++|+..-.....+..++..++..+.|++.    ++.  +.+...|....=+++
T Consensus        85 ~I~~~~gi~pg--~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~  162 (256)
T COG2519          85 YIVARLGISPG--SRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE  162 (256)
T ss_pred             HHHHHcCCCCC--CEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence            56677777666  6999999999999999996311122455677788877777643    442  344455666655555


Q ss_pred             Cceeeeeeccccccc
Q 038698          266 RAFDMAQCSRCLIPW  280 (283)
Q Consensus       266 ~SFDlV~cs~~Li~W  280 (283)
                       .||.|+- ....||
T Consensus       163 -~vDav~L-Dmp~PW  175 (256)
T COG2519         163 -DVDAVFL-DLPDPW  175 (256)
T ss_pred             -ccCEEEE-cCCChH
Confidence             8998875 333455

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=95.79  E-value=0.018  Score=55.76  Aligned_cols=80  Identities=13%  Similarity=0.090  Sum_probs=49.4

Q ss_pred             eeCCCCCCCCCch----hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc--
Q 038698          174 KFPGGGTMFPQGA----DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER--  247 (283)
Q Consensus       174 ~Fpgggt~F~~ga----~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er--  247 (283)
                      .|.=....|.+--    +...+.+.+.+... +  .++||++||+|.|+..|.+..   -.+.++|.++.+++.|++.  
T Consensus       176 ~~~~~~~sF~Q~N~~~~e~l~~~v~~~~~~~-~--~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~  249 (362)
T PRK05031        176 IYRQVENSFTQPNAAVNEKMLEWALDATKGS-K--GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIA  249 (362)
T ss_pred             EEEeCCCCeeccCHHHHHHHHHHHHHHhhcC-C--CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHH
Confidence            3333334566532    33455555555421 1  369999999999999887752   2567788888888877643  


Q ss_pred             --CCC-eEEEecccc
Q 038698          248 --GVP-AVIGVLGTI  259 (283)
Q Consensus       248 --g~~-a~~~v~da~  259 (283)
                        ++. +.+..+++.
T Consensus       250 ~~~~~~v~~~~~d~~  264 (362)
T PRK05031        250 ANGIDNVQIIRMSAE  264 (362)
T ss_pred             HhCCCcEEEEECCHH
Confidence              453 445555543

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=95.62  E-value=0.025  Score=54.58  Aligned_cols=73  Identities=21%  Similarity=0.213  Sum_probs=41.8

Q ss_pred             CCCCCch----hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC-
Q 038698          180 TMFPQGA----DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP-  250 (283)
Q Consensus       180 t~F~~ga----~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~-  250 (283)
                      ..|.+--    ...++.+.++++...+   +|||+=||+|+|+..|++..-   .+.++++.+++++.|.+    .++. 
T Consensus       172 ~sFfQvN~~~~~~l~~~~~~~l~~~~~---~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~i~n  245 (352)
T PF05958_consen  172 GSFFQVNPEQNEKLYEQALEWLDLSKG---DVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNGIDN  245 (352)
T ss_dssp             TS---SBHHHHHHHHHHHHHHCTT-TT---EEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT--S
T ss_pred             CcCccCcHHHHHHHHHHHHHHhhcCCC---cEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcCCCc
Confidence            4466533    3336666777775432   699999999999999998633   35566777888776653    3554 


Q ss_pred             eEEEeccc
Q 038698          251 AVIGVLGT  258 (283)
Q Consensus       251 a~~~v~da  258 (283)
                      +.+..+++
T Consensus       246 ~~f~~~~~  253 (352)
T PF05958_consen  246 VEFIRGDA  253 (352)
T ss_dssp             EEEEE--S
T ss_pred             ceEEEeec
Confidence            34544433

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PLN02823 spermine synthase

Probab=95.52  E-value=0.051  Score=52.56  Aligned_cols=86  Identities=15%  Similarity=0.133  Sum_probs=55.1

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---------CCeEEEeccc
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---------VPAVIGVLGT  258 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---------~~a~~~v~da  258 (283)
                      .|.+.|....-.....+++||-||+|.|..+..+++... ...+..+|+.++.++.|++.-         ....+.+.|+
T Consensus        88 ~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da  166 (336)
T PLN02823         88 VYHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDA  166 (336)
T ss_pred             HHHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChh
Confidence            466666544222223468999999999999988887531 124566788889888887531         1122344442


Q ss_pred             -cCCCCCCCceeeeeec
Q 038698          259 -IHLPYPSRAFDMAQCS  274 (283)
Q Consensus       259 -~rLPFpd~SFDlV~cs  274 (283)
                       .-|.-.++.||+|++-
T Consensus       167 ~~~L~~~~~~yDvIi~D  183 (336)
T PLN02823        167 RAELEKRDEKFDVIIGD  183 (336)
T ss_pred             HHHHhhCCCCccEEEec
Confidence             2234456899999975

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=95.50  E-value=0.064  Score=50.52  Aligned_cols=68  Identities=18%  Similarity=0.181  Sum_probs=46.2

Q ss_pred             CCCCCCCchhHHHHHHHhhCC----CCCCCccEEeecCCCcc----HHHHHHhhcCCe----eEeeccccChHHHHHHHH
Q 038698          178 GGTMFPQGADAYIDELASVIP----IKDGSVRTALDTGCGVA----SWGAYLLKRNVL----TMSFAPRDNHEAQVQFAL  245 (283)
Q Consensus       178 ggt~F~~ga~~Yid~I~~~l~----~~~g~~r~VLDVGCGtG----sfaa~L~~r~v~----~~sla~~D~s~a~vq~A~  245 (283)
                      .-|.|+++..++-..-.+++|    .+.++.-+|.-+||+||    |+|..|.+....    .+.|.+.|++...++.|.
T Consensus        67 n~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~  146 (268)
T COG1352          67 NVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKAR  146 (268)
T ss_pred             ccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHh
Confidence            357777877777333333333    22234678999999999    677777775432    467888899999888874

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=95.45  E-value=0.041  Score=50.68  Aligned_cols=83  Identities=14%  Similarity=0.117  Sum_probs=55.3

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc---CCCeEEEeccccCCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER---GVPAVIGVLGTIHLPY  263 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er---g~~a~~~v~da~rLPF  263 (283)
                      ...++.|.+.+....+  ..|||||.|+|.++..|+++..   .+..++.++...+.-.++   .....+...|+..+.+
T Consensus        16 ~~~~~~Iv~~~~~~~~--~~VlEiGpG~G~lT~~L~~~~~---~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~   90 (262)
T PF00398_consen   16 PNIADKIVDALDLSEG--DTVLEIGPGPGALTRELLKRGK---RVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDL   90 (262)
T ss_dssp             HHHHHHHHHHHTCGTT--SEEEEESSTTSCCHHHHHHHSS---EEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCG
T ss_pred             HHHHHHHHHhcCCCCC--CEEEEeCCCCccchhhHhcccC---cceeecCcHhHHHHHHHHhhhcccceeeecchhcccc
Confidence            4468888888876534  7999999999999999998752   334455556665555553   2334555567777776


Q ss_pred             CC---Cceeeeeec
Q 038698          264 PS---RAFDMAQCS  274 (283)
Q Consensus       264 pd---~SFDlV~cs  274 (283)
                      ++   +.-..|+++
T Consensus        91 ~~~~~~~~~~vv~N  104 (262)
T PF00398_consen   91 YDLLKNQPLLVVGN  104 (262)
T ss_dssp             GGHCSSSEEEEEEE
T ss_pred             HHhhcCCceEEEEE
Confidence            65   445566654

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.35  E-value=0.057  Score=53.99  Aligned_cols=97  Identities=19%  Similarity=0.199  Sum_probs=61.1

Q ss_pred             CCeeeeCCCCCCCCCch----hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH
Q 038698          170 GNVFKFPGGGTMFPQGA----DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL  245 (283)
Q Consensus       170 ~~~~~Fpgggt~F~~ga----~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~  245 (283)
                      +..+.|+.+  .|.+-.    ...++...+.+...++  .++||+=||.|+|+..|+++.-   .+.++++++++++.|.
T Consensus       260 ~~~~~~~~~--sF~Q~N~~~~ekl~~~a~~~~~~~~~--~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~  332 (432)
T COG2265         260 GVSFQISPR--SFFQVNPAVAEKLYETALEWLELAGG--ERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQ  332 (432)
T ss_pred             ceEEEeCCC--CceecCHHHHHHHHHHHHHHHhhcCC--CEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHH
Confidence            455666554  777644    3345555566655333  6899999999999999997632   3445566666665543


Q ss_pred             ----HcCCC-eEEEeccccCCCCC---CCceeeeee
Q 038698          246 ----ERGVP-AVIGVLGTIHLPYP---SRAFDMAQC  273 (283)
Q Consensus       246 ----erg~~-a~~~v~da~rLPFp---d~SFDlV~c  273 (283)
                          ..++. +.+..+++++..-.   ...||+|+-
T Consensus       333 ~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv  368 (432)
T COG2265         333 ENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV  368 (432)
T ss_pred             HHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence                23554 55666676665433   357888863

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=95.22  E-value=0.028  Score=56.92  Aligned_cols=76  Identities=17%  Similarity=0.100  Sum_probs=50.2

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH----HcCCCeE-EEeccccCC--CCCCCceeeeeeccc
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL----ERGVPAV-IGVLGTIHL--PYPSRAFDMAQCSRC  276 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~----erg~~a~-~~v~da~rL--PFpd~SFDlV~cs~~  276 (283)
                      ...+||||||.|.|...++.++... .+.|+|++...+..|+    ++++.+. +...++..+  =|+++++|.|+-.--
T Consensus       348 ~p~~lEIG~G~G~~~~~~A~~~p~~-~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP  426 (506)
T PRK01544        348 RKVFLEIGFGMGEHFINQAKMNPDA-LFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP  426 (506)
T ss_pred             CceEEEECCCchHHHHHHHHhCCCC-CEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence            4789999999999999999875432 3556666666555443    3466443 333343322  288999999987644


Q ss_pred             ccccc
Q 038698          277 LIPWT  281 (283)
Q Consensus       277 Li~W~  281 (283)
                      = ||-
T Consensus       427 D-PWp  430 (506)
T PRK01544        427 D-PWI  430 (506)
T ss_pred             C-CCC
Confidence            3 774

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=95.21  E-value=0.043  Score=55.36  Aligned_cols=43  Identities=23%  Similarity=0.259  Sum_probs=32.6

Q ss_pred             ccEEeecCCCccHHHHHHhhcCC-------eeEeeccccChHHHHHHHHH
Q 038698          204 VRTALDTGCGVASWGAYLLKRNV-------LTMSFAPRDNHEAQVQFALE  246 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v-------~~~sla~~D~s~a~vq~A~e  246 (283)
                      ..+|||.+||+|.|...++++..       ....+.+.|+++..+..|..
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~   81 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKK   81 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHH
Confidence            35899999999999887765421       13577899999988887754

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=95.20  E-value=0.17  Score=45.69  Aligned_cols=101  Identities=15%  Similarity=0.123  Sum_probs=54.9

Q ss_pred             eecCCeeeeCCCCCCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhh--cCCeeEeeccccChHHHHHHH
Q 038698          167 QFQGNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLK--RNVLTMSFAPRDNHEAQVQFA  244 (283)
Q Consensus       167 ~~~~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~--r~v~~~sla~~D~s~a~vq~A  244 (283)
                      +..|=+|.+.-.-.+|..+-..-..+|.+.+..  |  .+|||+-||.|.|+..+++  +...   +...|+.+..++..
T Consensus        69 ~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~~--~--e~VlD~faGIG~f~l~~ak~~~~~~---V~A~d~Np~a~~~L  141 (200)
T PF02475_consen   69 KENGIRFKVDLSKVYFSPRLSTERRRIANLVKP--G--EVVLDMFAGIGPFSLPIAKHGKAKR---VYAVDLNPDAVEYL  141 (200)
T ss_dssp             EETTEEEEEETTTS---GGGHHHHHHHHTC--T--T---EEEETT-TTTTTHHHHHHHT-SSE---EEEEES-HHHHHHH
T ss_pred             EeCCEEEEEccceEEEccccHHHHHHHHhcCCc--c--eEEEEccCCccHHHHHHhhhcCccE---EEEecCCHHHHHHH
Confidence            344556666666677776655556677777543  4  6999999999999998887  3332   33456665554433


Q ss_pred             ---HHc-CCC--eEEEeccccCCCCCCCceeeeeecc
Q 038698          245 ---LER-GVP--AVIGVLGTIHLPYPSRAFDMAQCSR  275 (283)
Q Consensus       245 ---~er-g~~--a~~~v~da~rLPFpd~SFDlV~cs~  275 (283)
                         .+. ++.  .....+|+..++- .+.||-|++..
T Consensus       142 ~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l  177 (200)
T PF02475_consen  142 KENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL  177 (200)
T ss_dssp             HHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred             HHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence               233 443  3345567776655 89999998764

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PLN02476 O-methyltransferase

Probab=95.20  E-value=0.039  Score=52.23  Aligned_cols=70  Identities=10%  Similarity=0.040  Sum_probs=41.7

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC--eEEEeccc-cCCC-C----CCCceeee
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP--AVIGVLGT-IHLP-Y----PSRAFDMA  271 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~--a~~~v~da-~rLP-F----pd~SFDlV  271 (283)
                      .++|||||+|+|+.+.+|+..-.....+..+|..++..+.|++    .|+.  ..+..+++ +-|| +    .+++||+|
T Consensus       119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V  198 (278)
T PLN02476        119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA  198 (278)
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence            3799999999999998888631111124455666666666642    3553  33333442 2232 1    24689999


Q ss_pred             ee
Q 038698          272 QC  273 (283)
Q Consensus       272 ~c  273 (283)
                      +-
T Consensus       199 FI  200 (278)
T PLN02476        199 FV  200 (278)
T ss_pred             EE
Confidence            74

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=95.07  E-value=0.06  Score=50.08  Aligned_cols=88  Identities=17%  Similarity=0.225  Sum_probs=53.8

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLP  262 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLP  262 (283)
                      +-.|..++.+.+|  .+||+.|.|.|+++..|+.. +..+ .+.-+|.+++..+.|++.    |+.  ..+...|+..--
T Consensus        29 ~~~I~~~l~i~pG--~~VlEaGtGSG~lt~~l~r~v~p~G-~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g  105 (247)
T PF08704_consen   29 ISYILMRLDIRPG--SRVLEAGTGSGSLTHALARAVGPTG-HVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG  105 (247)
T ss_dssp             HHHHHHHTT--TT---EEEEE--TTSHHHHHHHHHHTTTS-EEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred             HHHHHHHcCCCCC--CEEEEecCCcHHHHHHHHHHhCCCe-EEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence            4467778888777  69999999999999999874 2222 455678888887777532    553  456666765555


Q ss_pred             CC---CCceeeeeecccccccc
Q 038698          263 YP---SRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       263 Fp---d~SFDlV~cs~~Li~W~  281 (283)
                      |+   ++.||.|+- ..-.||.
T Consensus       106 ~~~~~~~~~DavfL-Dlp~Pw~  126 (247)
T PF08704_consen  106 FDEELESDFDAVFL-DLPDPWE  126 (247)
T ss_dssp             -STT-TTSEEEEEE-ESSSGGG
T ss_pred             ccccccCcccEEEE-eCCCHHH
Confidence            53   368999875 2334553

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=94.88  E-value=0.03  Score=45.71  Aligned_cols=39  Identities=8%  Similarity=0.158  Sum_probs=26.7

Q ss_pred             EEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH
Q 038698          206 TALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL  245 (283)
Q Consensus       206 ~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~  245 (283)
                      ++||||||.|.++..++++.... .+..++..+.+.+.++
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~-~v~~~E~~~~~~~~l~   39 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEG-RVIAFEPLPDAYEILE   39 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCC-EEEEEecCHHHHHHHH
Confidence            58999999999999888764321 3445566665554443

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=94.82  E-value=0.0088  Score=56.93  Aligned_cols=70  Identities=19%  Similarity=0.212  Sum_probs=50.3

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeeccccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~W  280 (283)
                      ..+||+|||.|-++.   ..  ....+.+.|++...+..|...|.. ...++|+-.+|+.+.+||.+++..++-+|
T Consensus        47 sv~~d~gCGngky~~---~~--p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhl  116 (293)
T KOG1331|consen   47 SVGLDVGCGNGKYLG---VN--PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHL  116 (293)
T ss_pred             ceeeecccCCcccCc---CC--CcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhh
Confidence            689999999996542   11  112356778877766666654542 34556899999999999999999988544

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=94.81  E-value=0.058  Score=49.58  Aligned_cols=75  Identities=20%  Similarity=0.190  Sum_probs=42.0

Q ss_pred             CccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-CC----CeEEEeccccCCCCCCCceeeeeecccc
Q 038698          203 SVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-GV----PAVIGVLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       203 ~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-g~----~a~~~v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                      ...++||.|+|.|..+..|+-.-...+++  ++..+.-++.|.+. +.    ...+...+.|..--+.+.+|+|||.=|+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDl--VEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l  132 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDL--VEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL  132 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEE--EES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEE--eccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence            45789999999999998776543444444  44455556666642 21    1234445666665556899999998887


Q ss_pred             cc
Q 038698          278 IP  279 (283)
Q Consensus       278 i~  279 (283)
                      .+
T Consensus       133 gh  134 (218)
T PF05891_consen  133 GH  134 (218)
T ss_dssp             GG
T ss_pred             cc
Confidence            54

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=94.77  E-value=0.03  Score=47.77  Aligned_cols=30  Identities=20%  Similarity=0.102  Sum_probs=25.6

Q ss_pred             eEEEeccccCCCCCCCceeeeeeccccccc
Q 038698          251 AVIGVLGTIHLPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       251 a~~~v~da~rLPFpd~SFDlV~cs~~Li~W  280 (283)
                      +.+.+++++.|||++++||+|++..++..|
T Consensus        28 i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~   57 (160)
T PLN02232         28 IEWIEGDAIDLPFDDCEFDAVTMGYGLRNV   57 (160)
T ss_pred             eEEEEechhhCCCCCCCeeEEEecchhhcC
Confidence            457778999999999999999999888544

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.73  E-value=0.049  Score=47.98  Aligned_cols=67  Identities=19%  Similarity=0.164  Sum_probs=45.9

Q ss_pred             cEEeecCCCccHHH--HHHhhcCCeeEeeccccChHHHHHHHH----HcCCCeEEEeccccCCCCCCCceeeeeecc
Q 038698          205 RTALDTGCGVASWG--AYLLKRNVLTMSFAPRDNHEAQVQFAL----ERGVPAVIGVLGTIHLPYPSRAFDMAQCSR  275 (283)
Q Consensus       205 r~VLDVGCGtGsfa--a~L~~r~v~~~sla~~D~s~a~vq~A~----erg~~a~~~v~da~rLPFpd~SFDlV~cs~  275 (283)
                      ..++|+|||.|-+.  ..+.+.    -.+.|+|+.++.++.+.    +--+.+.+.+.+...|-+..+.||.++-+.
T Consensus        50 kkl~DLgcgcGmLs~a~sm~~~----e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNp  122 (185)
T KOG3420|consen   50 KKLKDLGCGCGMLSIAFSMPKN----ESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP  122 (185)
T ss_pred             cchhhhcCchhhhHHHhhcCCC----ceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence            68999999999665  333332    13567888888877654    334445555667777778889999887653

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=94.68  E-value=0.12  Score=47.08  Aligned_cols=87  Identities=22%  Similarity=0.413  Sum_probs=51.3

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHH---HHH-HHHcCCCeEE--EeccccC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQ---VQF-ALERGVPAVI--GVLGTIH  260 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~---vq~-A~erg~~a~~--~v~da~r  260 (283)
                      +.-++.|.+.++.. +  .+||.||||||.-+.+++++-. .+..-+.|.....   |+. +.+.+.+++.  ..+|+.+
T Consensus        12 ~pIl~vL~~~l~~~-~--~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~   87 (204)
T PF06080_consen   12 DPILEVLKQYLPDS-G--TRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSA   87 (204)
T ss_pred             hHHHHHHHHHhCcc-C--ceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCC
Confidence            44566677777642 2  2699999999998888887632 2345566666544   221 2233433221  0123323


Q ss_pred             C--C------CCCCceeeeeecccc
Q 038698          261 L--P------YPSRAFDMAQCSRCL  277 (283)
Q Consensus       261 L--P------Fpd~SFDlV~cs~~L  277 (283)
                      -  |      +..++||.|+|.-++
T Consensus        88 ~~w~~~~~~~~~~~~~D~i~~~N~l  112 (204)
T PF06080_consen   88 PPWPWELPAPLSPESFDAIFCINML  112 (204)
T ss_pred             CCCccccccccCCCCcceeeehhHH
Confidence            2  2      346799999998776

The function of this family is unknown.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=94.10  E-value=0.12  Score=51.90  Aligned_cols=89  Identities=15%  Similarity=0.181  Sum_probs=42.6

Q ss_pred             hHHHHHHHhhCCCC--CC----CccEEeecCCCccHHHHHHhhc------CCeeEeeccccChHHHHHH-HHHcCC--Ce
Q 038698          187 DAYIDELASVIPIK--DG----SVRTALDTGCGVASWGAYLLKR------NVLTMSFAPRDNHEAQVQF-ALERGV--PA  251 (283)
Q Consensus       187 ~~Yid~I~~~l~~~--~g----~~r~VLDVGCGtGsfaa~L~~r------~v~~~sla~~D~s~a~vq~-A~erg~--~a  251 (283)
                      +.|-+.|.+.|...  ..    ...+|||||||+|-+...-++.      .+.+..+.........++. ..+.+.  .+
T Consensus       164 ~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V  243 (448)
T PF05185_consen  164 DQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKV  243 (448)
T ss_dssp             HHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTE
T ss_pred             HHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeE
Confidence            55655665555421  11    1357999999999876543332      1223223222211111211 122333  35


Q ss_pred             EEEeccccCCCCCCCceeeeeeccc
Q 038698          252 VIGVLGTIHLPYPSRAFDMAQCSRC  276 (283)
Q Consensus       252 ~~~v~da~rLPFpd~SFDlV~cs~~  276 (283)
                      .+...+++.+..|. ..|+|++...
T Consensus       244 ~vi~~d~r~v~lpe-kvDIIVSElL  267 (448)
T PF05185_consen  244 TVIHGDMREVELPE-KVDIIVSELL  267 (448)
T ss_dssp             EEEES-TTTSCHSS--EEEEEE---
T ss_pred             EEEeCcccCCCCCC-ceeEEEEecc
Confidence            55556777777765 8999998643

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=94.07  E-value=0.15  Score=53.75  Aligned_cols=45  Identities=20%  Similarity=0.190  Sum_probs=33.9

Q ss_pred             eeccccChHHHHHHHHHc----CCC--eEEEeccccCCCCCC--Cceeeeeec
Q 038698          230 SFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLPYPS--RAFDMAQCS  274 (283)
Q Consensus       230 sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLPFpd--~SFDlV~cs  274 (283)
                      .+.+.|+++.++..|++.    |+.  +.+...|..+++.++  ++||+|+|+
T Consensus       258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtN  310 (702)
T PRK11783        258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISN  310 (702)
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEEC
Confidence            578999999999887643    653  446667888886654  689999997

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=93.71  E-value=0.32  Score=44.65  Aligned_cols=85  Identities=15%  Similarity=0.129  Sum_probs=53.6

Q ss_pred             CchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeE--EEe-c
Q 038698          184 QGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAV--IGV-L  256 (283)
Q Consensus       184 ~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~--~~v-~  256 (283)
                      .....++..|.++.+     +.+||+||.+.|+-+.+|+..-..-..+.-+|..++..+.|++.    |+...  +.. +
T Consensus        45 ~e~g~~L~~L~~~~~-----~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~g  119 (219)
T COG4122          45 PETGALLRLLARLSG-----PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGG  119 (219)
T ss_pred             hhHHHHHHHHHHhcC-----CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecC
Confidence            345667777766663     36899999999998888887421011455667778887777632    55332  222 2


Q ss_pred             c-ccCCC-CCCCceeeeee
Q 038698          257 G-TIHLP-YPSRAFDMAQC  273 (283)
Q Consensus       257 d-a~rLP-Fpd~SFDlV~c  273 (283)
                      + .+.|- +.+++||+|+-
T Consensus       120 dal~~l~~~~~~~fDliFI  138 (219)
T COG4122         120 DALDVLSRLLDGSFDLVFI  138 (219)
T ss_pred             cHHHHHHhccCCCccEEEE
Confidence            3 11222 67899999974

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=93.08  E-value=0.37  Score=42.81  Aligned_cols=69  Identities=19%  Similarity=0.190  Sum_probs=39.8

Q ss_pred             EEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHH----HHHcCCC-eEEEeccccCCCCCCCceeeeeeccc
Q 038698          206 TALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQF----ALERGVP-AVIGVLGTIHLPYPSRAFDMAQCSRC  276 (283)
Q Consensus       206 ~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~----A~erg~~-a~~~v~da~rLPFpd~SFDlV~cs~~  276 (283)
                      ++||||.|.|.-|.-|+=... ...+..+|...-.+.|    +.+-|.. +.+....++. +-...+||+|++..+
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv  124 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV  124 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS
T ss_pred             eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh
Confidence            799999999976654432111 1123445555544433    3344776 4444445666 778899999998654

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=93.08  E-value=0.11  Score=48.93  Aligned_cols=52  Identities=19%  Similarity=0.075  Sum_probs=36.8

Q ss_pred             HhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH
Q 038698          194 ASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE  246 (283)
Q Consensus       194 ~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e  246 (283)
                      .+.++..+-....+|||||-.|.+++.+++.-. ...+-|+|+.+..|+.|.+
T Consensus        49 Lk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark  100 (288)
T KOG2899|consen   49 LKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARK  100 (288)
T ss_pred             hhhccccccCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHH
Confidence            344443333457899999999999999887411 2235677888888888864

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=92.79  E-value=0.33  Score=47.71  Aligned_cols=103  Identities=12%  Similarity=0.103  Sum_probs=59.4

Q ss_pred             cCC-eeeeCCCCCCCCCchhHH-----HHHHHhhCCCCCCC-ccEEeecCCCccHHHHHHhhc--CCeeEeeccccChHH
Q 038698          169 QGN-VFKFPGGGTMFPQGADAY-----IDELASVIPIKDGS-VRTALDTGCGVASWGAYLLKR--NVLTMSFAPRDNHEA  239 (283)
Q Consensus       169 ~~~-~~~Fpgggt~F~~ga~~Y-----id~I~~~l~~~~g~-~r~VLDVGCGtGsfaa~L~~r--~v~~~sla~~D~s~a  239 (283)
                      ||. +|.+|..+..|-+-+...     +-.+........+. .-+|||+-||+|.++..++.+  ++  -.+..+|+++.
T Consensus         3 EG~~~i~~p~~~~vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga--~~Vv~nD~n~~   80 (374)
T TIGR00308         3 EGKAEILVPKKETVFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGV--REVFANDINPK   80 (374)
T ss_pred             cceEEEEecCCCCcccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCC--CEEEEEeCCHH
Confidence            444 667776666777766444     21111112211110 137999999999999998886  33  24567888888


Q ss_pred             HHHHHHHc----CCC-eEEEeccccCC-CCCCCceeeeee
Q 038698          240 QVQFALER----GVP-AVIGVLGTIHL-PYPSRAFDMAQC  273 (283)
Q Consensus       240 ~vq~A~er----g~~-a~~~v~da~rL-PFpd~SFDlV~c  273 (283)
                      .++.+.+.    ++. ..+...|+.++ .-....||+|..
T Consensus        81 Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl  120 (374)
T TIGR00308        81 AVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDI  120 (374)
T ss_pred             HHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence            87766432    332 33444454333 222356998864

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=92.02  E-value=0.42  Score=41.98  Aligned_cols=67  Identities=21%  Similarity=0.126  Sum_probs=37.6

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccc----cCCCCCCCceeeeeec
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGT----IHLPYPSRAFDMAQCS  274 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da----~rLPFpd~SFDlV~cs  274 (283)
                      ++|||+-||.|..+.++++..-.   +..+|+.+..++.|+..    |+.  ..+..+|.    .++..... ||+|+++
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~---Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~-~D~vFlS   76 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDR---VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKI-FDVVFLS   76 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-E---EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------SEEEE-
T ss_pred             CEEEEeccCcCHHHHHHHHhCCe---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcccccc-ccEEEEC
Confidence            37999999999999999987432   34567777777776532    553  34544552    23333333 8999987


Q ss_pred             c
Q 038698          275 R  275 (283)
Q Consensus       275 ~  275 (283)
                      -
T Consensus        77 P   77 (163)
T PF09445_consen   77 P   77 (163)
T ss_dssp             -
T ss_pred             C
Confidence            4

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=91.90  E-value=0.39  Score=48.60  Aligned_cols=71  Identities=15%  Similarity=0.156  Sum_probs=46.6

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH---Hc-CCCe-EEEeccccCCC-CCCCceeeee----ec
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL---ER-GVPA-VIGVLGTIHLP-YPSRAFDMAQ----CS  274 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~---er-g~~a-~~~v~da~rLP-Fpd~SFDlV~----cs  274 (283)
                      .+|||+++|.|.=+.+|++.--....+..+|+++..++...   +| |+.. .+...|+..++ ...+.||.|.    ||
T Consensus       115 ~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCS  194 (470)
T PRK11933        115 QRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPCS  194 (470)
T ss_pred             CEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCC
Confidence            68999999999777666664111114567788887765443   34 7754 45556766653 4456899999    77


Q ss_pred             c
Q 038698          275 R  275 (283)
Q Consensus       275 ~  275 (283)
                      .
T Consensus       195 G  195 (470)
T PRK11933        195 G  195 (470)
T ss_pred             C
Confidence            4

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=91.60  E-value=0.63  Score=44.14  Aligned_cols=86  Identities=19%  Similarity=0.099  Sum_probs=53.6

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-CCC--------eEEEeccc
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-GVP--------AVIGVLGT  258 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-g~~--------a~~~v~da  258 (283)
                      .|.+.+..+-....+.+++||=||-|.|..++.+++.... -.+.-+|+.++.+..|++. +..        +.+...|+
T Consensus        61 ~yhEml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~v-e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg  139 (282)
T COG0421          61 IYHEMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPV-ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG  139 (282)
T ss_pred             HHHHHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCc-ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH
Confidence            4555554443345566789999999999999999887532 2345567778888888764 211        12222232


Q ss_pred             -cCCCCCCCceeeeeec
Q 038698          259 -IHLPYPSRAFDMAQCS  274 (283)
Q Consensus       259 -~rLPFpd~SFDlV~cs  274 (283)
                       +-+.=...+||+|++-
T Consensus       140 ~~~v~~~~~~fDvIi~D  156 (282)
T COG0421         140 VEFLRDCEEKFDVIIVD  156 (282)
T ss_pred             HHHHHhCCCcCCEEEEc
Confidence             2233233389999863

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=91.39  E-value=0.7  Score=44.35  Aligned_cols=89  Identities=21%  Similarity=0.276  Sum_probs=61.4

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC--eEEEeccccCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP--AVIGVLGTIHLPY  263 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~--a~~~v~da~rLPF  263 (283)
                      |..|.++|....|  .+||.-|.|.|+++-.++..-..+.-+.-+|.|+...+.|++    .|++  ..+..-|+...-|
T Consensus        94 ia~I~~~L~i~PG--svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF  171 (314)
T KOG2915|consen   94 IAMILSMLEIRPG--SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF  171 (314)
T ss_pred             HHHHHHHhcCCCC--CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence            5678888888888  699999999999998888752223345567888877777764    3554  4455556666666


Q ss_pred             C--CCceeeeeecccccccc
Q 038698          264 P--SRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       264 p--d~SFDlV~cs~~Li~W~  281 (283)
                      .  +..+|.|+- ....||.
T Consensus       172 ~~ks~~aDaVFL-DlPaPw~  190 (314)
T KOG2915|consen  172 LIKSLKADAVFL-DLPAPWE  190 (314)
T ss_pred             cccccccceEEE-cCCChhh
Confidence            4  588888875 3334553

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=91.19  E-value=0.39  Score=46.24  Aligned_cols=57  Identities=19%  Similarity=0.275  Sum_probs=40.1

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc---CCeeEeeccccChHHHHHHHHHc
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR---NVLTMSFAPRDNHEAQVQFALER  247 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r---~v~~~sla~~D~s~a~vq~A~er  247 (283)
                      +.+.+.|++.++.  +  .+++|+|||.|.=+..|++.   ........++|+|.+.++.+.++
T Consensus        64 ~~~~~~Ia~~i~~--~--~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~  123 (319)
T TIGR03439        64 KKHSSDIAASIPS--G--SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAE  123 (319)
T ss_pred             HHHHHHHHHhcCC--C--CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHh
Confidence            3456677777764  3  47999999999877766652   11123568999999999887653

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=90.90  E-value=0.38  Score=43.38  Aligned_cols=82  Identities=13%  Similarity=0.085  Sum_probs=46.7

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC--eEEEeccc-c
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP--AVIGVLGT-I  259 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~--a~~~v~da-~  259 (283)
                      ...+..|.++..     +++||+|||++|+-+.+|++.-.....+.-+|..+...+.|++    .|..  +.+..+++ +
T Consensus        34 g~lL~~l~~~~~-----~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~  108 (205)
T PF01596_consen   34 GQLLQMLVRLTR-----PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE  108 (205)
T ss_dssp             HHHHHHHHHHHT------SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH
T ss_pred             HHHHHHHHHhcC-----CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh
Confidence            344555555553     3799999999999988888741111133445566666666642    2542  33444442 2


Q ss_pred             CCC-----CCCCceeeeee
Q 038698          260 HLP-----YPSRAFDMAQC  273 (283)
Q Consensus       260 rLP-----Fpd~SFDlV~c  273 (283)
                      -||     .+.+.||+|+-
T Consensus       109 ~l~~l~~~~~~~~fD~VFi  127 (205)
T PF01596_consen  109 VLPELANDGEEGQFDFVFI  127 (205)
T ss_dssp             HHHHHHHTTTTTSEEEEEE
T ss_pred             hHHHHHhccCCCceeEEEE
Confidence            122     22468999985

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=90.36  E-value=0.54  Score=43.65  Aligned_cols=82  Identities=12%  Similarity=0.034  Sum_probs=45.3

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC--eEEEecc-cc
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP--AVIGVLG-TI  259 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~--a~~~v~d-a~  259 (283)
                      ...+..+.++.+     +++||+||+++|+-+.+|+..-.....+..+|..++..++|++    .|+.  +.+..++ .+
T Consensus        68 g~lL~~l~~~~~-----ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e  142 (247)
T PLN02589         68 GQFLNMLLKLIN-----AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP  142 (247)
T ss_pred             HHHHHHHHHHhC-----CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence            344555555443     3689999999998888777631111133444555555555542    2543  2333333 22


Q ss_pred             CCCC------CCCceeeeee
Q 038698          260 HLPY------PSRAFDMAQC  273 (283)
Q Consensus       260 rLPF------pd~SFDlV~c  273 (283)
                      -||-      .+++||+|+-
T Consensus       143 ~L~~l~~~~~~~~~fD~iFi  162 (247)
T PLN02589        143 VLDQMIEDGKYHGTFDFIFV  162 (247)
T ss_pred             HHHHHHhccccCCcccEEEe
Confidence            3331      1368999975

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=90.20  E-value=0.43  Score=46.61  Aligned_cols=72  Identities=25%  Similarity=0.202  Sum_probs=45.3

Q ss_pred             CccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHH-HHHHH--cCCCeEEEeccccCCCCCCCceeeeeecccccc
Q 038698          203 SVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQV-QFALE--RGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIP  279 (283)
Q Consensus       203 ~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~v-q~A~e--rg~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~  279 (283)
                      .....+|+|.|.|..+..|+.+ ..-++..-+|  ...+ +.|..  .|+..+.+++ .+.+|=.|    +|++..||-+
T Consensus       177 ~v~~avDvGgGiG~v~k~ll~~-fp~ik~infd--lp~v~~~a~~~~~gV~~v~gdm-fq~~P~~d----aI~mkWiLhd  248 (342)
T KOG3178|consen  177 GVNVAVDVGGGIGRVLKNLLSK-YPHIKGINFD--LPFVLAAAPYLAPGVEHVAGDM-FQDTPKGD----AIWMKWILHD  248 (342)
T ss_pred             cCceEEEcCCcHhHHHHHHHHh-CCCCceeecC--HHHHHhhhhhhcCCcceecccc-cccCCCcC----eEEEEeeccc
Confidence            4689999999999999988874 2222333333  3332 22222  2344444433 33477665    9999999999


Q ss_pred             ccc
Q 038698          280 WTS  282 (283)
Q Consensus       280 W~~  282 (283)
                      |..
T Consensus       249 wtD  251 (342)
T KOG3178|consen  249 WTD  251 (342)
T ss_pred             CCh
Confidence            975

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=90.14  E-value=0.38  Score=46.35  Aligned_cols=25  Identities=24%  Similarity=0.410  Sum_probs=15.9

Q ss_pred             cccCCCCCCCceeeeeeccccccccc
Q 038698          257 GTIHLPYPSRAFDMAQCSRCLIPWTS  282 (283)
Q Consensus       257 da~rLPFpd~SFDlV~cs~~Li~W~~  282 (283)
                      +-+.==||++|.|++||+-+| +|.+
T Consensus        97 SFy~rLfP~~Svh~~~Ss~al-HWLS  121 (334)
T PF03492_consen   97 SFYGRLFPSNSVHFGHSSYAL-HWLS  121 (334)
T ss_dssp             -TTS--S-TT-EEEEEEES-T-TB-S
T ss_pred             hhhhccCCCCceEEEEEechh-hhcc
Confidence            344555999999999999999 9976

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=89.62  E-value=0.43  Score=48.53  Aligned_cols=71  Identities=20%  Similarity=0.253  Sum_probs=52.2

Q ss_pred             EEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC---C-eEEEeccccCCCCCCCceeeeeeccccc
Q 038698          206 TALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV---P-AVIGVLGTIHLPYPSRAFDMAQCSRCLI  278 (283)
Q Consensus       206 ~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~---~-a~~~v~da~rLPFpd~SFDlV~cs~~Li  278 (283)
                      ++|=+|||---+...|.+-+..  +|.-+|+|.-.+.....++.   + ..+..++...|.|+|.|||+|+--..|.
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlD  125 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLD  125 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccc
Confidence            8999999998888777774332  45556777766666665542   2 3466778999999999999998766653

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=88.67  E-value=1.6  Score=43.24  Aligned_cols=67  Identities=15%  Similarity=0.214  Sum_probs=36.7

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEec--cccCCCCCCCceeeeeec
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVL--GTIHLPYPSRAFDMAQCS  274 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~--da~rLPFpd~SFDlV~cs  274 (283)
                      .++|||||||.|-+.-.-++.+..  .+..++.+ +|.|.|++.    .+...+.+.  -++.+-+| ...|++++.
T Consensus       178 ~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISE  250 (517)
T KOG1500|consen  178 DKIVLDVGAGSGILSFFAAQAGAK--KVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISE  250 (517)
T ss_pred             CcEEEEecCCccHHHHHHHHhCcc--eEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEec
Confidence            379999999999765444443322  22233322 445666532    222223332  35666666 457888875

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=88.14  E-value=1.2  Score=40.83  Aligned_cols=88  Identities=15%  Similarity=0.216  Sum_probs=47.6

Q ss_pred             hhHHHHHHHhhCCC---CCCCccEEeecCCCccHHHHHHh--hcCCeeEeeccccChHHHHHH----HHHcCCC-eEEEe
Q 038698          186 ADAYIDELASVIPI---KDGSVRTALDTGCGVASWGAYLL--KRNVLTMSFAPRDNHEAQVQF----ALERGVP-AVIGV  255 (283)
Q Consensus       186 a~~Yid~I~~~l~~---~~g~~r~VLDVGCGtGsfaa~L~--~r~v~~~sla~~D~s~a~vq~----A~erg~~-a~~~v  255 (283)
                      .+-|.++|.+-+..   .++...+++|||.|.|.-|.-|+  ..+.   .++.+|...-.+.|    +.+-+.+ +.+..
T Consensus        47 ~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~---~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~  123 (215)
T COG0357          47 EELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDL---KVTLLESLGKKIAFLREVKKELGLENVEIVH  123 (215)
T ss_pred             HHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCC---cEEEEccCchHHHHHHHHHHHhCCCCeEEeh
Confidence            34555555555442   22114799999999998776655  2222   23445554444333    3345776 44444


Q ss_pred             ccccCCCCCCCceeeeeeccc
Q 038698          256 LGTIHLPYPSRAFDMAQCSRC  276 (283)
Q Consensus       256 ~da~rLPFpd~SFDlV~cs~~  276 (283)
                      .-++.+.=...-||+|+|..+
T Consensus       124 ~RaE~~~~~~~~~D~vtsRAv  144 (215)
T COG0357         124 GRAEEFGQEKKQYDVVTSRAV  144 (215)
T ss_pred             hhHhhcccccccCcEEEeehc
Confidence            445554321111999998654

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=88.04  E-value=0.42  Score=46.94  Aligned_cols=71  Identities=20%  Similarity=0.194  Sum_probs=46.4

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC--eEEEeccccCCCCCCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP--AVIGVLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~--a~~~v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                      ..+||+|||.|-...+......  -...+.+....++..+.+    .++.  ..+.+.+....||+|++||.|.+..+.
T Consensus       112 ~~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~  188 (364)
T KOG1269|consen  112 SKVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV  188 (364)
T ss_pred             ccccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence            3789999999987776665321  123455555555444322    2222  234555788999999999999987765

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=88.02  E-value=3  Score=41.40  Aligned_cols=44  Identities=14%  Similarity=0.114  Sum_probs=34.2

Q ss_pred             eccccChHHHHHHHHH----cCCC--eEEEeccccCCCCCCCceeeeeec
Q 038698          231 FAPRDNHEAQVQFALE----RGVP--AVIGVLGTIHLPYPSRAFDMAQCS  274 (283)
Q Consensus       231 la~~D~s~a~vq~A~e----rg~~--a~~~v~da~rLPFpd~SFDlV~cs  274 (283)
                      +.+.|++..+++.|+.    .|+.  ..|.++++.+|+=+-+.+|+|+|+
T Consensus       257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~N  306 (381)
T COG0116         257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISN  306 (381)
T ss_pred             EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeC
Confidence            5688999999988753    3665  557788888886544899999997

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=87.48  E-value=1.3  Score=40.38  Aligned_cols=38  Identities=16%  Similarity=0.266  Sum_probs=25.0

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCe-eEeeccccChHHHHH
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVL-TMSFAPRDNHEAQVQ  242 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~-~~sla~~D~s~a~vq  242 (283)
                      +..+|+||||+|.-+..|++.... ++. -..|+.+....
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~-latDiNp~A~~   82 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALY-LATDINPEALE   82 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceE-EEecCCHHHHH
Confidence            578999999999888888875221 111 13466665544

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=87.20  E-value=0.83  Score=45.31  Aligned_cols=24  Identities=25%  Similarity=0.488  Sum_probs=20.2

Q ss_pred             ccCCCCCCCceeeeeeccccccccc
Q 038698          258 TIHLPYPSRAFDMAQCSRCLIPWTS  282 (283)
Q Consensus       258 a~rLPFpd~SFDlV~cs~~Li~W~~  282 (283)
                      -+.==||++|.+++||+-+| +|.+
T Consensus       153 FY~RLfP~~Slh~~~Ss~sl-HWLS  176 (386)
T PLN02668        153 FYRRLFPARSIDVFHSAFSL-HWLS  176 (386)
T ss_pred             ccccccCCCceEEEEeeccc-eecc
Confidence            34445999999999999999 9975

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=86.89  E-value=0.75  Score=44.16  Aligned_cols=89  Identities=20%  Similarity=0.266  Sum_probs=44.9

Q ss_pred             chhHHHHHHHhhCCCCCCC---ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH---cC--CC--eEEE
Q 038698          185 GADAYIDELASVIPIKDGS---VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE---RG--VP--AVIG  254 (283)
Q Consensus       185 ga~~Yid~I~~~l~~~~g~---~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e---rg--~~--a~~~  254 (283)
                      +.-.||..|.++|......   .-++||||+|.-..=..|..+ ...-.+.+.|+.+..++.|.+   ++  +.  +.+.
T Consensus        81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~-~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~  159 (299)
T PF05971_consen   81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAK-LYGWSFVATDIDPKSLESARENVERNPNLESRIELR  159 (299)
T ss_dssp             HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHH-HH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEE
T ss_pred             hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhh-hcCCeEEEecCCHHHHHHHHHHHHhccccccceEEE
Confidence            3467888888888753221   357999999977443334332 123456777888888887763   23  22  2221


Q ss_pred             -ecc----ccCCCCCCCceeeeeec
Q 038698          255 -VLG----TIHLPYPSRAFDMAQCS  274 (283)
Q Consensus       255 -v~d----a~rLPFpd~SFDlV~cs  274 (283)
                       +-+    ...+--++..||+..|+
T Consensus       160 ~~~~~~~i~~~i~~~~e~~dftmCN  184 (299)
T PF05971_consen  160 KQKNPDNIFDGIIQPNERFDFTMCN  184 (299)
T ss_dssp             E--ST-SSTTTSTT--S-EEEEEE-
T ss_pred             EcCCccccchhhhcccceeeEEecC
Confidence             111    11222345689999986

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=86.33  E-value=0.79  Score=47.06  Aligned_cols=80  Identities=21%  Similarity=0.240  Sum_probs=48.9

Q ss_pred             CCeeeeCCCCCCCCCc----hhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH
Q 038698          170 GNVFKFPGGGTMFPQG----ADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL  245 (283)
Q Consensus       170 ~~~~~Fpgggt~F~~g----a~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~  245 (283)
                      |=+|+|+-  +.|++-    |.-.-..|.+++.+..+  ..+||+=||||+++..|+++-   ..+.|+.++++.+..|.
T Consensus       350 ~ltF~iSp--~AFFQ~Nt~~aevLys~i~e~~~l~~~--k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~  422 (534)
T KOG2187|consen  350 GLTFRISP--GAFFQTNTSAAEVLYSTIGEWAGLPAD--KTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAE  422 (534)
T ss_pred             CeEEEECC--chhhccCcHHHHHHHHHHHHHhCCCCC--cEEEEEeecCCceehhhhccc---cceeeeecChhhcchhh
Confidence            33666765  234442    23334456666666444  689999999999999998862   23456666666666654


Q ss_pred             H----cCC-CeEEEec
Q 038698          246 E----RGV-PAVIGVL  256 (283)
Q Consensus       246 e----rg~-~a~~~v~  256 (283)
                      +    .|+ ++.|.++
T Consensus       423 ~nA~~NgisNa~Fi~g  438 (534)
T KOG2187|consen  423 KNAQINGISNATFIVG  438 (534)
T ss_pred             hcchhcCccceeeeec
Confidence            3    355 3445554

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=86.09  E-value=0.69  Score=43.11  Aligned_cols=92  Identities=16%  Similarity=0.197  Sum_probs=51.5

Q ss_pred             eCCCCCCCCCchhHHHHHHHhhCCC---CCC-CccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCC
Q 038698          175 FPGGGTMFPQGADAYIDELASVIPI---KDG-SVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVP  250 (283)
Q Consensus       175 Fpgggt~F~~ga~~Yid~I~~~l~~---~~g-~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~  250 (283)
                      |-|-|.||--.-+++    .+++.+   .++ ++.++||+|.|.|-.+..|+..--   .+..-++|..|...-.+++..
T Consensus        84 ~lgrGsMFifSe~QF----~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk~yn  156 (288)
T KOG3987|consen   84 FLGRGSMFIFSEEQF----RKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKKNYN  156 (288)
T ss_pred             ccccCceEEecHHHH----HHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhcCCc
Confidence            344456654333444    344333   233 467899999999999887766311   133446666666555555543


Q ss_pred             eEEEeccccCCCCCCCceeeeeecccc
Q 038698          251 AVIGVLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       251 a~~~v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                      + +...+-.+   -|=.||+|.|--.|
T Consensus       157 V-l~~~ew~~---t~~k~dli~clNlL  179 (288)
T KOG3987|consen  157 V-LTEIEWLQ---TDVKLDLILCLNLL  179 (288)
T ss_pred             e-eeehhhhh---cCceeehHHHHHHH
Confidence            2 33223222   23348999886544

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=84.31  E-value=2  Score=37.86  Aligned_cols=100  Identities=19%  Similarity=0.268  Sum_probs=52.5

Q ss_pred             cCCeeeeCCCCCCCCCchhHHHHHHHhhCCCC--CCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH-
Q 038698          169 QGNVFKFPGGGTMFPQGADAYIDELASVIPIK--DGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL-  245 (283)
Q Consensus       169 ~~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~~--~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~-  245 (283)
                      .|-++..|.|...=|.. +.--+.|-.+|...  .|  .++||+=||+|++|.--++|+..-  +.-+|.+...++..+ 
T Consensus         9 kgr~l~~p~~~~~RPT~-drvrealFniL~~~~~~g--~~vLDLFaGSGalGlEALSRGA~~--v~fVE~~~~a~~~i~~   83 (183)
T PF03602_consen    9 KGRKLKTPKGDNTRPTT-DRVREALFNILQPRNLEG--ARVLDLFAGSGALGLEALSRGAKS--VVFVEKNRKAIKIIKK   83 (183)
T ss_dssp             TT-EEE-TT--TS-SSS-HHHHHHHHHHHHCH-HTT---EEEETT-TTSHHHHHHHHTT-SE--EEEEES-HHHHHHHHH
T ss_pred             CCCEecCCCCCCcCCCc-HHHHHHHHHHhcccccCC--CeEEEcCCccCccHHHHHhcCCCe--EEEEECCHHHHHHHHH
Confidence            46677778765443322 33344555555532  23  689999999999998888887653  345566665544332 


Q ss_pred             --H-cCCC--eEEEecc----ccCCCCCCCceeeeee
Q 038698          246 --E-RGVP--AVIGVLG----TIHLPYPSRAFDMAQC  273 (283)
Q Consensus       246 --e-rg~~--a~~~v~d----a~rLPFpd~SFDlV~c  273 (283)
                        + -+..  ..+...|    ..++.-....||+|+.
T Consensus        84 N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl  120 (183)
T PF03602_consen   84 NLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL  120 (183)
T ss_dssp             HHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred             HHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence              2 2433  3343344    2223235789999975

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK10742 putative methyltransferase; Provisional

Probab=84.00  E-value=4  Score=38.38  Aligned_cols=38  Identities=16%  Similarity=0.189  Sum_probs=30.6

Q ss_pred             HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCee
Q 038698          191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLT  228 (283)
Q Consensus       191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~  228 (283)
                      |.|.+.+.++.|..-+|||.=+|.|..+.-|+.++..+
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V  113 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRV  113 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEE
Confidence            56778888776643489999999999999999987653

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=83.83  E-value=1.6  Score=39.43  Aligned_cols=27  Identities=15%  Similarity=0.276  Sum_probs=17.1

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHH
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWG  218 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfa  218 (283)
                      +..|.+.+.+..+  .+.+|+|||.|...
T Consensus        31 ~~~il~~~~l~~~--dvF~DlGSG~G~~v   57 (205)
T PF08123_consen   31 VSKILDELNLTPD--DVFYDLGSGVGNVV   57 (205)
T ss_dssp             HHHHHHHTT--TT---EEEEES-TTSHHH
T ss_pred             HHHHHHHhCCCCC--CEEEECCCCCCHHH
Confidence            5566677776433  79999999999653

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=81.31  E-value=2.6  Score=38.10  Aligned_cols=68  Identities=16%  Similarity=0.130  Sum_probs=39.3

Q ss_pred             EeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCCCCCCCc-eeeeeeccc
Q 038698          207 ALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLPYPSRA-FDMAQCSRC  276 (283)
Q Consensus       207 VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLPFpd~S-FDlV~cs~~  276 (283)
                      |.||||--|++..+|.+++... .+...|+++.-++.|.+.    |..  ..+..+|.-. +++.+- .|.|+-+.+
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~-~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGM   75 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAP-KAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGM   75 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEE-EEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecC
Confidence            6899999999999999987643 345568888777776532    532  3333334222 344443 677765543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.91  E-value=0.76  Score=41.27  Aligned_cols=100  Identities=19%  Similarity=0.242  Sum_probs=57.1

Q ss_pred             ecCCeeeeCCCCCCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEee---ccccChHHHHHHH
Q 038698          168 FQGNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSF---APRDNHEAQVQFA  244 (283)
Q Consensus       168 ~~~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sl---a~~D~s~a~vq~A  244 (283)
                      -.|+.-++|+      .+|-+|  .+.+-....-|  +.||.+|.|-=.++..|....++..++   .|.+.+...++..
T Consensus         4 ntgnvciwps------eeala~--~~l~~~n~~rg--~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki   73 (201)
T KOG3201|consen    4 NTGNVCIWPS------EEALAW--TILRDPNKIRG--RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKI   73 (201)
T ss_pred             CCCcEEeccc------HHHHHH--HHHhchhHHhH--HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHH
Confidence            3577778888      334444  23333222223  789999999877887777754444344   3555555555544


Q ss_pred             HHcCCC--eE-EEec----cccCCCCCCCceeeeeecccc
Q 038698          245 LERGVP--AV-IGVL----GTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       245 ~erg~~--a~-~~v~----da~rLPFpd~SFDlV~cs~~L  277 (283)
                      .-++..  .. ..++    -..+.--..++||+|.|+.|+
T Consensus        74 ~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaADCl  113 (201)
T KOG3201|consen   74 RNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAADCL  113 (201)
T ss_pred             HhcccccccceehhhHHHHhhhHHHHhhCcccEEEeccch
Confidence            433310  00 1011    123334456799999999997

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=80.79  E-value=2.5  Score=35.20  Aligned_cols=30  Identities=20%  Similarity=0.160  Sum_probs=22.7

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCeeEeeccccC
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDN  236 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~  236 (283)
                      ...-.|+|||.|.+.-.|.+.+..+.   |+|.
T Consensus        59 ~~~FVDlGCGNGLLV~IL~~EGy~G~---GiD~   88 (112)
T PF07757_consen   59 FQGFVDLGCGNGLLVYILNSEGYPGW---GIDA   88 (112)
T ss_pred             CCceEEccCCchHHHHHHHhCCCCcc---cccc
Confidence            35689999999998888888766553   5553

; GO: 0008168 methyltransferase activity

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=80.49  E-value=2.6  Score=39.68  Aligned_cols=68  Identities=24%  Similarity=0.352  Sum_probs=38.7

Q ss_pred             CccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCCeEEEeccccCCCCCCCceeeee
Q 038698          203 SVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVPAVIGVLGTIHLPYPSRAFDMAQ  272 (283)
Q Consensus       203 ~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~a~~~v~da~rLPFpd~SFDlV~  272 (283)
                      .+.+|||||||.==++........ .....+.|++..++++...    .+++..+.+.|...=| +...-|+.+
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~~-~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaL  176 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEAP-GATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLAL  176 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSST-T-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEE
T ss_pred             CCchhhhhhccCCceehhhcccCC-CcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhh
Confidence            368999999998877766555432 2256789999988876532    2555544444422211 345566654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	283
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	5e-04

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 24/121 (19%)

Query: 173 FKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFA 232
           ++  G         D   DE+ +++ ++ G     LD GCG+      L           
Sbjct: 33  WEDAGADVSVDDATDRLTDEMIALLDVRSGD--RVLDVGCGIGKPAVRLATA------RD 84

Query: 233 PR----DNHEAQVQFALERGVPAVIGVLGTIH--------LPYPSRAFD--MAQCSRCLI 278
            R         QV  A  R   A  G+   +         LP+   +FD   A  S   +
Sbjct: 85  VRVTGISISRPQVNQANARATAA--GLANRVTFSYADAMDLPFEDASFDAVWALESLHHM 142

Query: 279 P 279
           P
Sbjct: 143 P 143

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	283
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.34
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.26
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.23
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.23
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.23
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.21
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.2
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.17
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.17
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.17
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.16
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.14
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.13
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.13
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.11
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.11
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.11
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.11
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.09
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.07
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.07
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.07
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.07
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.07
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.07
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.06
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.06
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.06
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.06
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.05
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.05
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.04
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.04
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.04
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.04
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.04
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.04
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.04
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.03
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.03
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.03
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.02
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.01
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.01
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.0
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.0
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.99
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.99
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.99
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.97
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.97
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.97
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.96
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.96
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.95
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.94
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.93
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.92
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.92
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.92
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.92
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.91
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.91
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.9
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.89
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.89
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.89
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.88
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.87
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.87
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.86
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.86
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.86
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.86
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.85
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.84
3ocj_A	305	Putative exported protein; structural genomics, PS	98.84
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.83
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.82
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.82
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.8
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.8
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.8
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.8
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.8
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.79
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.79
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.77
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.77
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.77
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.76
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.76
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.75
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.74
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.74
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.74
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.74
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.73
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.73
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.73
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.72
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.71
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.7
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.7
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.69
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.69
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.69
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.66
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.66
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.66
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.66
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.65
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.65
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.65
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.64
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.64
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.64
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.64
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.64
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.63
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.63
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.63
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.63
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.62
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.62
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.62
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.62
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.62
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.6
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.6
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.6
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.6
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.59
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.59
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.58
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.58
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.58
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.58
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.57
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.56
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.55
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.55
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.55
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.54
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.54
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.53
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.53
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.53
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.52
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.51
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.51
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.51
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.5
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.5
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.49
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.49
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.49
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.49
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.49
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.48
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.48
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.47
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.47
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.46
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.45
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	98.45
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.45
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.45
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.44
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.44
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.42
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.42
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.42
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.41
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.4
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.4
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.4
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.39
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.39
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.39
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.38
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.37
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.36
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.36
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.35
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.35
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.35
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.34
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.34
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.34
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.33
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.32
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.32
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.31
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.31
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.3
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.29
2o07_A	304	Spermidine synthase; structural genomics, structur	98.28
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.28
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.27
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.26
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.25
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.25
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.24
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.23
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.22
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.21
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.2
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.19
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.19
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.18
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.18
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.16
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.15
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.15
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.14
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.13
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.13
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.12
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.12
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.11
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.11
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.11
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.11
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.1
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.1
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.09
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.09
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.08
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.08
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.07
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.06
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.05
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.05
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.04
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.04
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.03
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.03
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.02
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.02
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.02
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.0
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	97.99
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.99
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.99
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.98
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	97.97
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	97.96
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	97.95
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.95
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.94
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	97.93
3k6r_A	278	Putative transferase PH0793; structural genomics,	97.91
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	97.88
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	97.86
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	97.85
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	97.85
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	97.84
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.81
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	97.79
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	97.78
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	97.75
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	97.75
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	97.71
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	97.66
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.66
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.66
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.4
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.39
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.38
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.28
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.27
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.13
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.09
3khk_A	544	Type I restriction-modification system methylation	97.04
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	97.01
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	96.96
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	96.91
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	96.8
3lkd_A	542	Type I restriction-modification system methyltrans	96.65
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.51
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	96.22
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	96.12
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	95.89
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	95.73
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	95.43
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	95.21
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	94.55
3ufb_A	530	Type I restriction-modification system methyltran	93.12
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	93.07
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	92.98
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	92.64
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	91.84
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	90.67
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	87.57
3cvo_A	202	Methyltransferase-like protein of unknown functio;	87.13
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	85.52
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	85.07
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	82.81
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	80.66

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.34  E-value=4.9e-13  Score=120.84  Aligned_cols=84  Identities=25%  Similarity=0.296  Sum_probs=67.8

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCcee
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFD  269 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFD  269 (283)
                      ++.|.+..+.    ..+|||||||+|.++..|++++.   .+.++|++++|++.|.++ ..+.+.+++++.+||++++||
T Consensus        30 ~~~l~~~~~~----~~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~~-~~v~~~~~~~e~~~~~~~sfD  101 (257)
T 4hg2_A           30 FRWLGEVAPA----RGDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALRH-PRVTYAVAPAEDTGLPPASVD  101 (257)
T ss_dssp             HHHHHHHSSC----SSEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCCC-TTEEEEECCTTCCCCCSSCEE
T ss_pred             HHHHHHhcCC----CCCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhhc-CCceeehhhhhhhcccCCccc
Confidence            4556565543    25899999999999999999854   467889999999887643 346677789999999999999


Q ss_pred             eeeeccccccccc
Q 038698          270 MAQCSRCLIPWTS  282 (283)
Q Consensus       270 lV~cs~~Li~W~~  282 (283)
                      +|+|..++ +|..
T Consensus       102 ~v~~~~~~-h~~~  113 (257)
T 4hg2_A          102 VAIAAQAM-HWFD  113 (257)
T ss_dssp             EEEECSCC-TTCC
T ss_pred             EEEEeeeh-hHhh
Confidence            99999998 8853

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.26  E-value=1.1e-11  Score=108.70  Aligned_cols=86  Identities=14%  Similarity=0.174  Sum_probs=68.8

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYP  264 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFp  264 (283)
                      ++.|.+.++...+  .+|||||||+|.++..|+++..   .+.++|+++.+++.|+++    +.+ ..+.+++++.+||+
T Consensus        26 ~~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~  100 (260)
T 1vl5_A           26 LAKLMQIAALKGN--EEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT  100 (260)
T ss_dssp             HHHHHHHHTCCSC--CEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC
T ss_pred             HHHHHHHhCCCCC--CEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCC
Confidence            5566777766444  6899999999999999998753   577889999999888754    443 56777899999999


Q ss_pred             CCceeeeeeccccccc
Q 038698          265 SRAFDMAQCSRCLIPW  280 (283)
Q Consensus       265 d~SFDlV~cs~~Li~W  280 (283)
                      +++||+|+|..++-+|
T Consensus       101 ~~~fD~V~~~~~l~~~  116 (260)
T 1vl5_A          101 DERFHIVTCRIAAHHF  116 (260)
T ss_dssp             TTCEEEEEEESCGGGC
T ss_pred             CCCEEEEEEhhhhHhc
Confidence            9999999999998554

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.23  E-value=2.1e-11  Score=107.17  Aligned_cols=92  Identities=22%  Similarity=0.382  Sum_probs=72.9

Q ss_pred             chhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccc
Q 038698          185 GADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGT  258 (283)
Q Consensus       185 ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da  258 (283)
                      .....++.|.+.+++..+  .+|||||||+|.++..|+++.  ...+.++|+++.+++.|.++    +.  ...+..++.
T Consensus        45 ~~~~~~~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~  120 (273)
T 3bus_A           45 ATDRLTDEMIALLDVRSG--DRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADA  120 (273)
T ss_dssp             HHHHHHHHHHHHSCCCTT--CEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             HHHHHHHHHHHhcCCCCC--CEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcc
Confidence            345567788888876544  699999999999999998752  23677889999998888654    44  256777789


Q ss_pred             cCCCCCCCceeeeeeccccccc
Q 038698          259 IHLPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       259 ~rLPFpd~SFDlV~cs~~Li~W  280 (283)
                      ..+||++++||+|+|..++.++
T Consensus       121 ~~~~~~~~~fD~v~~~~~l~~~  142 (273)
T 3bus_A          121 MDLPFEDASFDAVWALESLHHM  142 (273)
T ss_dssp             TSCCSCTTCEEEEEEESCTTTS
T ss_pred             ccCCCCCCCccEEEEechhhhC
Confidence            9999999999999999998543

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.23  E-value=3.2e-11  Score=104.69  Aligned_cols=91  Identities=16%  Similarity=0.222  Sum_probs=72.4

Q ss_pred             hhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---CCeEEEeccccCCC
Q 038698          186 ADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---VPAVIGVLGTIHLP  262 (283)
Q Consensus       186 a~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---~~a~~~v~da~rLP  262 (283)
                      .....+.+.+.++...+  .+|||||||+|.++..|+++.  ...+.++|+++.+++.|.++.   ....+...+...+|
T Consensus        40 ~~~~~~~~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~  115 (266)
T 3ujc_A           40 GLEATKKILSDIELNEN--SKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKE  115 (266)
T ss_dssp             HHHHHHHHTTTCCCCTT--CEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCC
T ss_pred             hHHHHHHHHHhcCCCCC--CEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCC
Confidence            34445677777766444  699999999999999999862  235678899999999998874   34567778999999


Q ss_pred             CCCCceeeeeeccccccc
Q 038698          263 YPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       263 Fpd~SFDlV~cs~~Li~W  280 (283)
                      |++++||+|+|..++-++
T Consensus       116 ~~~~~fD~v~~~~~l~~~  133 (266)
T 3ujc_A          116 FPENNFDLIYSRDAILAL  133 (266)
T ss_dssp             CCTTCEEEEEEESCGGGS
T ss_pred             CCCCcEEEEeHHHHHHhc
Confidence            999999999999988554

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.23  E-value=2.9e-12  Score=111.12  Aligned_cols=90  Identities=13%  Similarity=0.082  Sum_probs=70.1

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC---CeEEEeccccCCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV---PAVIGVLGTIHLPY  263 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~---~a~~~v~da~rLPF  263 (283)
                      ..+++.+.+.++...+  .+|||||||+|.++..|++++.  ..+.++|+++.+++.|+++..   ...+...+...+|+
T Consensus        79 ~~~~~~~l~~l~~~~~--~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~  154 (254)
T 1xtp_A           79 IEGSRNFIASLPGHGT--SRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATL  154 (254)
T ss_dssp             HHHHHHHHHTSTTCCC--SEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCC
T ss_pred             HHHHHHHHHhhcccCC--CEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCC
Confidence            4455666666664333  6899999999999999988742  246788999999999987642   34566778889999


Q ss_pred             CCCceeeeeeccccccc
Q 038698          264 PSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       264 pd~SFDlV~cs~~Li~W  280 (283)
                      ++++||+|+|..++.++
T Consensus       155 ~~~~fD~v~~~~~l~~~  171 (254)
T 1xtp_A          155 PPNTYDLIVIQWTAIYL  171 (254)
T ss_dssp             CSSCEEEEEEESCGGGS
T ss_pred             CCCCeEEEEEcchhhhC
Confidence            99999999999998654

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.21  E-value=1.5e-11  Score=108.74  Aligned_cols=88  Identities=11%  Similarity=0.117  Sum_probs=71.9

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSR  266 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~  266 (283)
                      ..+.+.|.+.++...+  .+|||||||+|.++..|++.+.   .+.++|+++.+++.|.++. +..+.+.+.+.+||+++
T Consensus        20 ~~~~~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~-~~~~~~~d~~~~~~~~~   93 (261)
T 3ege_A           20 IRIVNAIINLLNLPKG--SVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVVHP-QVEWFTGYAENLALPDK   93 (261)
T ss_dssp             HHHHHHHHHHHCCCTT--CEEEEETCTTSHHHHHHHTTTC---EEEEECSCHHHHHSSCCCT-TEEEECCCTTSCCSCTT
T ss_pred             HHHHHHHHHHhCCCCC--CEEEEEcCcccHHHHHHHhCCC---EEEEEeCCHHHHHHHHhcc-CCEEEECchhhCCCCCC
Confidence            3467778888876444  6999999999999999998643   5678999999988776654 66677788999999999


Q ss_pred             ceeeeeeccccccc
Q 038698          267 AFDMAQCSRCLIPW  280 (283)
Q Consensus       267 SFDlV~cs~~Li~W  280 (283)
                      +||+|+|..++-++
T Consensus        94 ~fD~v~~~~~l~~~  107 (261)
T 3ege_A           94 SVDGVISILAIHHF  107 (261)
T ss_dssp             CBSEEEEESCGGGC
T ss_pred             CEeEEEEcchHhhc
Confidence            99999999998554

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.20  E-value=1.4e-11  Score=105.83  Aligned_cols=71  Identities=15%  Similarity=0.042  Sum_probs=60.2

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-C----------------CCeEEEeccccCCCCCC-C
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-G----------------VPAVIGVLGTIHLPYPS-R  266 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-g----------------~~a~~~v~da~rLPFpd-~  266 (283)
                      .+|||+|||+|.++.+|++++.   .+.++|+++.|++.|+++ +                ..+.+.++|+..||+++ +
T Consensus        24 ~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~  100 (203)
T 1pjz_A           24 ARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG  100 (203)
T ss_dssp             CEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH
T ss_pred             CEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCC
Confidence            5899999999999999999753   577899999999999876 2                24567778999999987 9


Q ss_pred             ceeeeeeccccc
Q 038698          267 AFDMAQCSRCLI  278 (283)
Q Consensus       267 SFDlV~cs~~Li  278 (283)
                      +||+|+|..++.
T Consensus       101 ~fD~v~~~~~l~  112 (203)
T 1pjz_A          101 HCAAFYDRAAMI  112 (203)
T ss_dssp             SEEEEEEESCGG
T ss_pred             CEEEEEECcchh
Confidence            999999988774

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.17  E-value=7.6e-11  Score=98.96  Aligned_cols=88  Identities=17%  Similarity=0.217  Sum_probs=69.7

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCC
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHL  261 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rL  261 (283)
                      ...+.+.+.++...   .+|||||||+|.++..|+++  ....+.++|+++.+++.|.++    +.  ...+..++...+
T Consensus        31 ~~~~~~~~~~~~~~---~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  105 (219)
T 3dlc_A           31 IIAENIINRFGITA---GTCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI  105 (219)
T ss_dssp             HHHHHHHHHHCCCE---EEEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBC
T ss_pred             HHHHHHHHhcCCCC---CEEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHC
Confidence            34566666666532   38999999999999999987  245678899999999888765    43  356777899999


Q ss_pred             CCCCCceeeeeeccccccc
Q 038698          262 PYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       262 PFpd~SFDlV~cs~~Li~W  280 (283)
                      ||++++||+|+|..++.++
T Consensus       106 ~~~~~~~D~v~~~~~l~~~  124 (219)
T 3dlc_A          106 PIEDNYADLIVSRGSVFFW  124 (219)
T ss_dssp             SSCTTCEEEEEEESCGGGC
T ss_pred             CCCcccccEEEECchHhhc
Confidence            9999999999999988554

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.17  E-value=8.6e-11  Score=102.11  Aligned_cols=90  Identities=18%  Similarity=0.126  Sum_probs=70.8

Q ss_pred             hhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEecccc
Q 038698          186 ADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTI  259 (283)
Q Consensus       186 a~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~  259 (283)
                      ....++.|.+.+.+..+  .+|||||||+|.++..|+++.  ...+.++|+++.+++.|.++    |+  ...+..+++.
T Consensus        21 ~~~~~~~l~~~~~~~~~--~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~   96 (256)
T 1nkv_A           21 TEEKYATLGRVLRMKPG--TRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA   96 (256)
T ss_dssp             CHHHHHHHHHHTCCCTT--CEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT
T ss_pred             CHHHHHHHHHhcCCCCC--CEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChH
Confidence            35667888888876555  689999999999999998762  22457889999998887654    54  3667778999


Q ss_pred             CCCCCCCceeeeeeccccccc
Q 038698          260 HLPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       260 rLPFpd~SFDlV~cs~~Li~W  280 (283)
                      .+|+ +++||+|+|..++-++
T Consensus        97 ~~~~-~~~fD~V~~~~~~~~~  116 (256)
T 1nkv_A           97 GYVA-NEKCDVAACVGATWIA  116 (256)
T ss_dssp             TCCC-SSCEEEEEEESCGGGT
T ss_pred             hCCc-CCCCCEEEECCChHhc
Confidence            9999 9999999999888544

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.17  E-value=9.5e-11  Score=102.09  Aligned_cols=87  Identities=18%  Similarity=0.177  Sum_probs=70.0

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC--CCeEEEeccccCCCCCCCc
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG--VPAVIGVLGTIHLPYPSRA  267 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg--~~a~~~v~da~rLPFpd~S  267 (283)
                      .+.|.+.++...+  .+|||||||+|.++..|++++..  .+.++|+++.+++.|.++.  ....+..+++..+|+++++
T Consensus        33 ~~~l~~~~~~~~~--~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~  108 (253)
T 3g5l_A           33 WHELKKMLPDFNQ--KTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDA  108 (253)
T ss_dssp             HHHHHTTCCCCTT--CEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTC
T ss_pred             HHHHHHhhhccCC--CEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCC
Confidence            3456667765333  68999999999999999998642  5678899999999998774  3466777889999999999


Q ss_pred             eeeeeeccccccc
Q 038698          268 FDMAQCSRCLIPW  280 (283)
Q Consensus       268 FDlV~cs~~Li~W  280 (283)
                      ||+|+|..++-++
T Consensus       109 fD~v~~~~~l~~~  121 (253)
T 3g5l_A          109 YNVVLSSLALHYI  121 (253)
T ss_dssp             EEEEEEESCGGGC
T ss_pred             eEEEEEchhhhhh
Confidence            9999999988443

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.16  E-value=4.7e-11  Score=106.63  Aligned_cols=89  Identities=17%  Similarity=0.204  Sum_probs=70.6

Q ss_pred             hHHHHHHHhhC----CCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc----CC--CeEEEe
Q 038698          187 DAYIDELASVI----PIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER----GV--PAVIGV  255 (283)
Q Consensus       187 ~~Yid~I~~~l----~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v  255 (283)
                      ...++.|.+.+    ....+  .+|||||||+|.++..|+++ +.   .+.++|+++.+++.|.++    +.  ...+..
T Consensus        64 ~~~~~~l~~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~  138 (297)
T 2o57_A           64 LRTDEWLASELAMTGVLQRQ--AKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKY  138 (297)
T ss_dssp             HHHHHHHHHHHHHTTCCCTT--CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEE
T ss_pred             HHHHHHHHHHhhhccCCCCC--CEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEE
Confidence            44567777777    54434  68999999999999999886 43   567889999998888654    44  356777


Q ss_pred             ccccCCCCCCCceeeeeeccccccc
Q 038698          256 LGTIHLPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       256 ~da~rLPFpd~SFDlV~cs~~Li~W  280 (283)
                      ++...+||++++||+|+|..++.++
T Consensus       139 ~d~~~~~~~~~~fD~v~~~~~l~~~  163 (297)
T 2o57_A          139 GSFLEIPCEDNSYDFIWSQDAFLHS  163 (297)
T ss_dssp             CCTTSCSSCTTCEEEEEEESCGGGC
T ss_pred             cCcccCCCCCCCEeEEEecchhhhc
Confidence            8899999999999999999998655

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.14  E-value=1.1e-10  Score=101.44  Aligned_cols=73  Identities=12%  Similarity=0.157  Sum_probs=61.8

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCCCceeeeeeccccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~W  280 (283)
                      .+|||||||+|.++..|++++.   .+.++|+++.+++.|.++    .....+..++...+||++++||+|+|..++ +|
T Consensus        41 ~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l-~~  116 (263)
T 2yqz_A           41 PVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW-HL  116 (263)
T ss_dssp             CEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG-GG
T ss_pred             CEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch-hh
Confidence            6899999999999999998743   567889999999998876    234667778899999999999999999887 44


Q ss_pred             c
Q 038698          281 T  281 (283)
Q Consensus       281 ~  281 (283)
                      .
T Consensus       117 ~  117 (263)
T 2yqz_A          117 V  117 (263)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.13  E-value=1.6e-10  Score=101.84  Aligned_cols=89  Identities=16%  Similarity=0.138  Sum_probs=69.8

Q ss_pred             hHHHHHHHhhCC-CCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEecccc
Q 038698          187 DAYIDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTI  259 (283)
Q Consensus       187 ~~Yid~I~~~l~-~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~  259 (283)
                      ...++.+.+.++ +..+  .+|||||||+|.++..|+++.  ...+.++|+++.+++.|.++    +++  ..+...+..
T Consensus        31 ~~~~~~~l~~l~~~~~~--~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  106 (267)
T 3kkz_A           31 PEVTLKALSFIDNLTEK--SLIADIGCGTGGQTMVLAGHV--TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMD  106 (267)
T ss_dssp             HHHHHHHHTTCCCCCTT--CEEEEETCTTCHHHHHHHTTC--SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             HHHHHHHHHhcccCCCC--CEEEEeCCCCCHHHHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChh
Confidence            445666777776 3333  699999999999999999872  23567889999998888654    443  667778999


Q ss_pred             CCCCCCCceeeeeecccccc
Q 038698          260 HLPYPSRAFDMAQCSRCLIP  279 (283)
Q Consensus       260 rLPFpd~SFDlV~cs~~Li~  279 (283)
                      .+||++++||+|+|..++-+
T Consensus       107 ~~~~~~~~fD~i~~~~~~~~  126 (267)
T 3kkz_A          107 DLPFRNEELDLIWSEGAIYN  126 (267)
T ss_dssp             SCCCCTTCEEEEEESSCGGG
T ss_pred             hCCCCCCCEEEEEEcCCcee
Confidence            99999999999999988744

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.13  E-value=5.7e-11  Score=100.00  Aligned_cols=73  Identities=15%  Similarity=0.127  Sum_probs=63.8

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeeccccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~W  280 (283)
                      .+|||||||+|.++..|++++.   .+.++|+++.+++.|.++.....+..++...+|+++++||+|+|..++.++
T Consensus        43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  115 (203)
T 3h2b_A           43 GVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHM  115 (203)
T ss_dssp             SCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTC
T ss_pred             CeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcC
Confidence            5899999999999999999854   567889999999999988666777778899999999999999999988654

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.11  E-value=2.7e-10  Score=99.01  Aligned_cols=89  Identities=15%  Similarity=0.144  Sum_probs=69.1

Q ss_pred             hHHHHHHHhhCC-CCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEecccc
Q 038698          187 DAYIDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTI  259 (283)
Q Consensus       187 ~~Yid~I~~~l~-~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~  259 (283)
                      ...++.+.+.++ +..+  .+|||||||+|.++..|+++...  .+.++|+++.+++.|.++    ++.  ..+..++..
T Consensus        31 ~~~~~~~l~~l~~~~~~--~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~  106 (257)
T 3f4k_A           31 PEATRKAVSFINELTDD--AKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD  106 (257)
T ss_dssp             HHHHHHHHTTSCCCCTT--CEEEEETCTTSHHHHHHHHHCCS--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             HHHHHHHHHHHhcCCCC--CeEEEeCCCCCHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence            344556666664 3333  58999999999999999987431  567889999998887654    443  567778899


Q ss_pred             CCCCCCCceeeeeecccccc
Q 038698          260 HLPYPSRAFDMAQCSRCLIP  279 (283)
Q Consensus       260 rLPFpd~SFDlV~cs~~Li~  279 (283)
                      .+||++++||+|+|..++-+
T Consensus       107 ~~~~~~~~fD~v~~~~~l~~  126 (257)
T 3f4k_A          107 NLPFQNEELDLIWSEGAIYN  126 (257)
T ss_dssp             SCSSCTTCEEEEEEESCSCC
T ss_pred             hCCCCCCCEEEEEecChHhh
Confidence            99999999999999998844

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.11  E-value=1.8e-10  Score=99.00  Aligned_cols=86  Identities=20%  Similarity=0.142  Sum_probs=70.2

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc--CCCeEEEeccccCCCCCC
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER--GVPAVIGVLGTIHLPYPS  265 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er--g~~a~~~v~da~rLPFpd  265 (283)
                      ..++.+.+.++.  +  .+|||||||+|.++..|++++.   .+.++|+++.+++.|.++  .....+..++...+|+++
T Consensus        42 ~~~~~l~~~~~~--~--~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~  114 (242)
T 3l8d_A           42 TIIPFFEQYVKK--E--AEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFEN  114 (242)
T ss_dssp             THHHHHHHHSCT--T--CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCT
T ss_pred             HHHHHHHHHcCC--C--CeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCC
Confidence            356667677653  3  5899999999999999999854   567889999999999877  334667778999999999


Q ss_pred             Cceeeeeeccccccc
Q 038698          266 RAFDMAQCSRCLIPW  280 (283)
Q Consensus       266 ~SFDlV~cs~~Li~W  280 (283)
                      ++||+|+|..++.++
T Consensus       115 ~~fD~v~~~~~l~~~  129 (242)
T 3l8d_A          115 EQFEAIMAINSLEWT  129 (242)
T ss_dssp             TCEEEEEEESCTTSS
T ss_pred             CCccEEEEcChHhhc
Confidence            999999999988544

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.11  E-value=2.4e-10  Score=99.17  Aligned_cols=88  Identities=17%  Similarity=0.264  Sum_probs=68.3

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCce
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAF  268 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SF  268 (283)
                      ....+.+.++...+  .+|||||||+|.++..|+++.. ...+.++|+++.+++.|.++.....+..++.+.+| ++++|
T Consensus        21 ~~~~l~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~f   96 (259)
T 2p35_A           21 PARDLLAQVPLERV--LNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKA   96 (259)
T ss_dssp             HHHHHHTTCCCSCC--SSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCE
T ss_pred             HHHHHHHhcCCCCC--CEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCc
Confidence            34466666665433  6899999999999999988611 12466789999999999887555667778899999 89999


Q ss_pred             eeeeecccccccc
Q 038698          269 DMAQCSRCLIPWT  281 (283)
Q Consensus       269 DlV~cs~~Li~W~  281 (283)
                      |+|+|+.++ +|.
T Consensus        97 D~v~~~~~l-~~~  108 (259)
T 2p35_A           97 DLLYANAVF-QWV  108 (259)
T ss_dssp             EEEEEESCG-GGS
T ss_pred             CEEEEeCch-hhC
Confidence            999999988 443

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.11  E-value=1.8e-10  Score=100.41  Aligned_cols=85  Identities=18%  Similarity=0.230  Sum_probs=66.8

Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCCCC
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYPSR  266 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFpd~  266 (283)
                      .+.+.+....+  .+|||||||+|.++..|+++..   .+.++|+++.+++.|.++    +.+ ..+..++.+.+||+++
T Consensus        12 ~~~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~   86 (239)
T 1xxl_A           12 LMIKTAECRAE--HRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD   86 (239)
T ss_dssp             HHHHHHTCCTT--CEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred             hHHHHhCcCCC--CEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence            34455555444  6899999999999999998753   567889999988877653    443 5567778999999999


Q ss_pred             ceeeeeecccccccc
Q 038698          267 AFDMAQCSRCLIPWT  281 (283)
Q Consensus       267 SFDlV~cs~~Li~W~  281 (283)
                      +||+|+|..++.+|.
T Consensus        87 ~fD~v~~~~~l~~~~  101 (239)
T 1xxl_A           87 SFDIITCRYAAHHFS  101 (239)
T ss_dssp             CEEEEEEESCGGGCS
T ss_pred             cEEEEEECCchhhcc
Confidence            999999999986653

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.09  E-value=1.4e-10  Score=98.47  Aligned_cols=88  Identities=22%  Similarity=0.272  Sum_probs=68.1

Q ss_pred             HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCCCCC
Q 038698          191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLPYPS  265 (283)
Q Consensus       191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLPFpd  265 (283)
                      +.+.+.+....+  .+|||+|||+|.++..|+++......+.++|+++.+++.|+++    ++ ...+..++...+|+++
T Consensus        27 ~~~~~~~~~~~~--~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~  104 (219)
T 3dh0_A           27 EKVLKEFGLKEG--MTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD  104 (219)
T ss_dssp             HHHHHHHTCCTT--CEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred             HHHHHHhCCCCC--CEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence            455566665444  6899999999999999988641123567889999998888654    44 3667778899999999


Q ss_pred             Cceeeeeeccccccc
Q 038698          266 RAFDMAQCSRCLIPW  280 (283)
Q Consensus       266 ~SFDlV~cs~~Li~W  280 (283)
                      ++||+|+|..++-++
T Consensus       105 ~~fD~v~~~~~l~~~  119 (219)
T 3dh0_A          105 NTVDFIFMAFTFHEL  119 (219)
T ss_dssp             SCEEEEEEESCGGGC
T ss_pred             CCeeEEEeehhhhhc
Confidence            999999999988554

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.07  E-value=2.2e-10  Score=100.96  Aligned_cols=84  Identities=23%  Similarity=0.374  Sum_probs=66.5

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCcee
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFD  269 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFD  269 (283)
                      .+.|.+.++  .+  .+|||||||+|.++..|++++.   .+.++|+++.+++.|.++.... +..+++..+|+++++||
T Consensus        45 ~~~l~~~~~--~~--~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~-~~~~d~~~~~~~~~~fD  116 (260)
T 2avn_A           45 GSFLEEYLK--NP--CRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFE  116 (260)
T ss_dssp             HHHHHHHCC--SC--CEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEE
T ss_pred             HHHHHHhcC--CC--CeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcCCC-EEECcHHHCCCCCCCEE
Confidence            344555554  23  5899999999999999998753   5678899999999998875433 55678899999999999


Q ss_pred             eeeecccccccc
Q 038698          270 MAQCSRCLIPWT  281 (283)
Q Consensus       270 lV~cs~~Li~W~  281 (283)
                      +|+|..++.+|.
T Consensus       117 ~v~~~~~~~~~~  128 (260)
T 2avn_A          117 AVLALGDVLSYV  128 (260)
T ss_dssp             EEEECSSHHHHC
T ss_pred             EEEEcchhhhcc
Confidence            999988776663

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.07  E-value=1.5e-10  Score=102.96  Aligned_cols=83  Identities=17%  Similarity=0.288  Sum_probs=65.3

Q ss_pred             HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceee
Q 038698          191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDM  270 (283)
Q Consensus       191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDl  270 (283)
                      +.|.+.++...+  .+|||||||+|.++..|++.+.   .+.++|+++.+++.|.++.....+.++++..+|+ +++||+
T Consensus        47 ~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~  120 (279)
T 3ccf_A           47 EDLLQLLNPQPG--EFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDA  120 (279)
T ss_dssp             CHHHHHHCCCTT--CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEE
T ss_pred             HHHHHHhCCCCC--CEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCE
Confidence            345555555333  6899999999999999998543   5678899999999998875445566678899998 689999


Q ss_pred             eeeccccccc
Q 038698          271 AQCSRCLIPW  280 (283)
Q Consensus       271 V~cs~~Li~W  280 (283)
                      |+|..++ +|
T Consensus       121 v~~~~~l-~~  129 (279)
T 3ccf_A          121 VFSNAML-HW  129 (279)
T ss_dssp             EEEESCG-GG
T ss_pred             EEEcchh-hh
Confidence            9999988 44

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.07  E-value=1e-10  Score=104.01  Aligned_cols=90  Identities=19%  Similarity=0.268  Sum_probs=69.7

Q ss_pred             hhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---------CCeEEEec
Q 038698          186 ADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---------VPAVIGVL  256 (283)
Q Consensus       186 a~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---------~~a~~~v~  256 (283)
                      ...|.+.|.+.++...+  .+|||||||+|.++..|++++.   .+.++|+++.+++.|+++.         ....+..+
T Consensus        42 ~~~~~~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~  116 (293)
T 3thr_A           42 TAEYKAWLLGLLRQHGC--HRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEA  116 (293)
T ss_dssp             CHHHHHHHHHHHHHTTC--CEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEEC
T ss_pred             HHHHHHHHHHHhcccCC--CEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeec
Confidence            35667777777765433  6899999999999999999864   5678999999999887531         12446667


Q ss_pred             cccCCC---CCCCceeeeeec-cccccc
Q 038698          257 GTIHLP---YPSRAFDMAQCS-RCLIPW  280 (283)
Q Consensus       257 da~rLP---Fpd~SFDlV~cs-~~Li~W  280 (283)
                      +...+|   |++++||+|+|. .++-++
T Consensus       117 d~~~~~~~~~~~~~fD~V~~~g~~l~~~  144 (293)
T 3thr_A          117 NWLTLDKDVPAGDGFDAVICLGNSFAHL  144 (293)
T ss_dssp             CGGGHHHHSCCTTCEEEEEECTTCGGGS
T ss_pred             ChhhCccccccCCCeEEEEEcChHHhhc
Confidence            888888   999999999998 676443

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.07  E-value=4.5e-10  Score=96.35  Aligned_cols=86  Identities=21%  Similarity=0.218  Sum_probs=68.5

Q ss_pred             HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC--CeEEEeccccCCCCCCCce
Q 038698          191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV--PAVIGVLGTIHLPYPSRAF  268 (283)
Q Consensus       191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~--~a~~~v~da~rLPFpd~SF  268 (283)
                      +.|.+.++...+  .+|||||||+|.++..|++++..  .+.++|+++.+++.|.++..  ...+..++...+|+++++|
T Consensus        33 ~~l~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~f  108 (243)
T 3bkw_A           33 PALRAMLPEVGG--LRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSF  108 (243)
T ss_dssp             HHHHHHSCCCTT--CEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCE
T ss_pred             HHHHHhccccCC--CEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCc
Confidence            356677765434  68999999999999999987542  56788999999999987743  3556677888999999999


Q ss_pred             eeeeeccccccc
Q 038698          269 DMAQCSRCLIPW  280 (283)
Q Consensus       269 DlV~cs~~Li~W  280 (283)
                      |+|+|..++.++
T Consensus       109 D~v~~~~~l~~~  120 (243)
T 3bkw_A          109 DLAYSSLALHYV  120 (243)
T ss_dssp             EEEEEESCGGGC
T ss_pred             eEEEEecccccc
Confidence            999999987543

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.07  E-value=3.5e-10  Score=102.62  Aligned_cols=86  Identities=16%  Similarity=0.167  Sum_probs=68.4

Q ss_pred             HHHHHhhCC-CCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCC
Q 038698          190 IDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHL  261 (283)
Q Consensus       190 id~I~~~l~-~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rL  261 (283)
                      .+.|.+.++ +..+  .+|||||||+|.++..|+++ +.   .+.++|+++.+++.|.++    ++.  +.+..++...+
T Consensus       105 ~~~l~~~l~~~~~~--~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  179 (312)
T 3vc1_A          105 AEFLMDHLGQAGPD--DTLVDAGCGRGGSMVMAHRRFGS---RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT  179 (312)
T ss_dssp             HHHHHTTSCCCCTT--CEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             HHHHHHHhccCCCC--CEEEEecCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC
Confidence            456777776 5444  68999999999999999887 43   467889999999888754    443  66777899999


Q ss_pred             CCCCCceeeeeeccccccc
Q 038698          262 PYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       262 PFpd~SFDlV~cs~~Li~W  280 (283)
                      ||++++||+|+|..++-.+
T Consensus       180 ~~~~~~fD~V~~~~~l~~~  198 (312)
T 3vc1_A          180 PFDKGAVTASWNNESTMYV  198 (312)
T ss_dssp             CCCTTCEEEEEEESCGGGS
T ss_pred             CCCCCCEeEEEECCchhhC
Confidence            9999999999999887443

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.07  E-value=1.7e-10  Score=98.44  Aligned_cols=89  Identities=15%  Similarity=0.163  Sum_probs=68.3

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC----C------CeEEEeccc
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG----V------PAVIGVLGT  258 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg----~------~a~~~v~da  258 (283)
                      ..+.|.+.+....+  .+|||||||+|.++..|+++... ..+.++|+++.+++.|+++-    .      ...+..++.
T Consensus        17 ~~~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~   93 (219)
T 3jwg_A           17 RLGTVVAVLKSVNA--KKVIDLGCGEGNLLSLLLKDKSF-EQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL   93 (219)
T ss_dssp             HHHHHHHHHHHTTC--CEEEEETCTTCHHHHHHHTSTTC-CEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS
T ss_pred             HHHHHHHHHhhcCC--CEEEEecCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc
Confidence            35556566653333  68999999999999999987532 35778999999999887651    1      456677788


Q ss_pred             cCCCCCCCceeeeeeccccccc
Q 038698          259 IHLPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       259 ~rLPFpd~SFDlV~cs~~Li~W  280 (283)
                      ..+|+++++||+|+|..++-++
T Consensus        94 ~~~~~~~~~fD~V~~~~~l~~~  115 (219)
T 3jwg_A           94 VYRDKRFSGYDAATVIEVIEHL  115 (219)
T ss_dssp             SSCCGGGTTCSEEEEESCGGGC
T ss_pred             cccccccCCCCEEEEHHHHHhC
Confidence            8999999999999999988544

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.06  E-value=3.3e-10  Score=101.84  Aligned_cols=86  Identities=10%  Similarity=0.103  Sum_probs=66.6

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-------CCCeEEEeccccCC
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-------GVPAVIGVLGTIHL  261 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-------g~~a~~~v~da~rL  261 (283)
                      ..+.|.++...   ...+|||||||+|.++..|+++-.....+.++|+++.+++.|.++       ...+.+.+++++.+
T Consensus        25 ~~~~l~~~~~~---~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~  101 (299)
T 3g5t_A           25 FYKMIDEYHDG---ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDF  101 (299)
T ss_dssp             HHHHHHHHCCS---CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCC
T ss_pred             HHHHHHHHhcC---CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhC
Confidence            45566665542   236999999999999999996311233567899999999988765       33566778899999


Q ss_pred             CCCC------Cceeeeeecccc
Q 038698          262 PYPS------RAFDMAQCSRCL  277 (283)
Q Consensus       262 PFpd------~SFDlV~cs~~L  277 (283)
                      |+++      ++||+|+|+.++
T Consensus       102 ~~~~~~~~~~~~fD~V~~~~~l  123 (299)
T 3g5t_A          102 KFLGADSVDKQKIDMITAVECA  123 (299)
T ss_dssp             GGGCTTTTTSSCEEEEEEESCG
T ss_pred             CccccccccCCCeeEEeHhhHH
Confidence            9998      999999999987

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.06  E-value=1.3e-10  Score=100.84  Aligned_cols=87  Identities=18%  Similarity=0.237  Sum_probs=66.3

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCC--CCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHL--PYP  264 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rL--PFp  264 (283)
                      +...+.+.+.++... ...+|||||||+|.++..|++++.   .+.++|+++.+++.|.++   ..+..++...+  ||+
T Consensus        26 ~~~~~~~~~~l~~~~-~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~---~~~~~~d~~~~~~~~~   98 (240)
T 3dli_A           26 ELVKARLRRYIPYFK-GCRRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK---FNVVKSDAIEYLKSLP   98 (240)
T ss_dssp             HHHHHHHGGGGGGTT-TCSCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT---SEEECSCHHHHHHTSC
T ss_pred             HHHHHHHHHHHhhhc-CCCeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh---cceeeccHHHHhhhcC
Confidence            445566666666322 226899999999999999998754   457889999999999876   34445566665  999


Q ss_pred             CCceeeeeeccccccc
Q 038698          265 SRAFDMAQCSRCLIPW  280 (283)
Q Consensus       265 d~SFDlV~cs~~Li~W  280 (283)
                      +++||+|+|..++-++
T Consensus        99 ~~~fD~i~~~~~l~~~  114 (240)
T 3dli_A           99 DKYLDGVMISHFVEHL  114 (240)
T ss_dssp             TTCBSEEEEESCGGGS
T ss_pred             CCCeeEEEECCchhhC
Confidence            9999999999988544

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.06  E-value=4.6e-10  Score=95.75  Aligned_cols=72  Identities=13%  Similarity=-0.016  Sum_probs=59.8

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC-CeEEEeccccCCCCCCCceeeeeeccccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV-PAVIGVLGTIHLPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~-~a~~~v~da~rLPFpd~SFDlV~cs~~Li~W  280 (283)
                      .+|||||||+|.++..|++++.   .+.++|+++.+++.|.++.. ...+...+...+ +++++||+|+|..+|-++
T Consensus        44 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~  116 (250)
T 2p7i_A           44 GNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHI  116 (250)
T ss_dssp             SCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGC
T ss_pred             CcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhh
Confidence            4799999999999999998754   46788999999999988744 456666788887 688999999999988543

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.06  E-value=6.4e-10  Score=94.40  Aligned_cols=86  Identities=14%  Similarity=0.170  Sum_probs=67.7

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC---CeEEEeccccCCCCC
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV---PAVIGVLGTIHLPYP  264 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~---~a~~~v~da~rLPFp  264 (283)
                      .+.+.+...++..  ...+|||||||+|.++..|++++   ..+.++|+++.+++.|.++..   ...+..++...++ +
T Consensus        38 ~~~~~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~  111 (216)
T 3ofk_A           38 RHTQLLRLSLSSG--AVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-T  111 (216)
T ss_dssp             HHHHHHHHHTTTS--SEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-C
T ss_pred             HHHHHHHHHcccC--CCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-C
Confidence            4455555566553  34789999999999999999874   367889999999999987632   3567778888998 7


Q ss_pred             CCceeeeeecccccc
Q 038698          265 SRAFDMAQCSRCLIP  279 (283)
Q Consensus       265 d~SFDlV~cs~~Li~  279 (283)
                      +++||+|+|+.++-+
T Consensus       112 ~~~fD~v~~~~~l~~  126 (216)
T 3ofk_A          112 AELFDLIVVAEVLYY  126 (216)
T ss_dssp             SCCEEEEEEESCGGG
T ss_pred             CCCccEEEEccHHHh
Confidence            999999999988843

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.05  E-value=3.6e-10  Score=95.23  Aligned_cols=85  Identities=13%  Similarity=0.087  Sum_probs=66.8

Q ss_pred             HHHHHhhCC-CCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC-CeEEEeccccCCCCCCCc
Q 038698          190 IDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV-PAVIGVLGTIHLPYPSRA  267 (283)
Q Consensus       190 id~I~~~l~-~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~-~a~~~v~da~rLPFpd~S  267 (283)
                      .+.+.+.+. ...+  .+|||||||+|.++..|++++.   .+.++|+++.+++.|.+.+. ...+..++...+ +++++
T Consensus        34 ~~~~~~~l~~~~~~--~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~  107 (218)
T 3ou2_A           34 APAALERLRAGNIR--GDVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQ  107 (218)
T ss_dssp             HHHHHHHHTTTTSC--SEEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSC
T ss_pred             HHHHHHHHhcCCCC--CeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCc
Confidence            444555554 3333  5899999999999999998843   56788999999999988773 466777788888 89999


Q ss_pred             eeeeeeccccccc
Q 038698          268 FDMAQCSRCLIPW  280 (283)
Q Consensus       268 FDlV~cs~~Li~W  280 (283)
                      ||+|+|+.++-++
T Consensus       108 ~D~v~~~~~l~~~  120 (218)
T 3ou2_A          108 WDAVFFAHWLAHV  120 (218)
T ss_dssp             EEEEEEESCGGGS
T ss_pred             eeEEEEechhhcC
Confidence            9999999988443

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.05  E-value=2.1e-10  Score=97.93  Aligned_cols=89  Identities=16%  Similarity=0.181  Sum_probs=68.2

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC------CeEEEeccc
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV------PAVIGVLGT  258 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~------~a~~~v~da  258 (283)
                      ..+.|.+.++...+  .+|||||||+|.++..|+++... ..+.++|+++.+++.|.++    +.      ...+..++.
T Consensus        17 ~~~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~   93 (217)
T 3jwh_A           17 RMNGVVAALKQSNA--RRVIDLGCGQGNLLKILLKDSFF-EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL   93 (217)
T ss_dssp             HHHHHHHHHHHTTC--CEEEEETCTTCHHHHHHHHCTTC-SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT
T ss_pred             HHHHHHHHHHhcCC--CEEEEeCCCCCHHHHHHHhhCCC-CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc
Confidence            45566666654333  69999999999999999986431 2567889999999988765    22      356667788


Q ss_pred             cCCCCCCCceeeeeeccccccc
Q 038698          259 IHLPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       259 ~rLPFpd~SFDlV~cs~~Li~W  280 (283)
                      ..+++++++||+|+|..++-++
T Consensus        94 ~~~~~~~~~fD~v~~~~~l~~~  115 (217)
T 3jwh_A           94 TYQDKRFHGYDAATVIEVIEHL  115 (217)
T ss_dssp             TSCCGGGCSCSEEEEESCGGGC
T ss_pred             ccccccCCCcCEEeeHHHHHcC
Confidence            8889999999999999988543

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.04  E-value=6.5e-10  Score=93.19  Aligned_cols=86  Identities=16%  Similarity=0.144  Sum_probs=66.9

Q ss_pred             hhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---CCeEEEeccccCCC
Q 038698          186 ADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---VPAVIGVLGTIHLP  262 (283)
Q Consensus       186 a~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---~~a~~~v~da~rLP  262 (283)
                      .....+.|.+.+..  +  .+|||+|||+|.++..|++++..  .+.++|+++.+++.|+++.   ....+.++++..+|
T Consensus        29 ~~~~~~~l~~~~~~--~--~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~  102 (215)
T 2pxx_A           29 FSSFRALLEPELRP--E--DRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLD  102 (215)
T ss_dssp             HHHHHHHHGGGCCT--T--CCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCC
T ss_pred             HHHHHHHHHHhcCC--C--CeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCC
Confidence            34456666666532  3  58999999999999999987542  5678899999999988763   23556677888999


Q ss_pred             CCCCceeeeeecccc
Q 038698          263 YPSRAFDMAQCSRCL  277 (283)
Q Consensus       263 Fpd~SFDlV~cs~~L  277 (283)
                      +++++||+|+|..++
T Consensus       103 ~~~~~fD~v~~~~~~  117 (215)
T 2pxx_A          103 FPSASFDVVLEKGTL  117 (215)
T ss_dssp             SCSSCEEEEEEESHH
T ss_pred             CCCCcccEEEECcch
Confidence            999999999997765

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.04  E-value=6.7e-10  Score=93.35  Aligned_cols=82  Identities=16%  Similarity=0.171  Sum_probs=63.8

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLP  262 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLP  262 (283)
                      ..++..+.+.++.  +   +|||||||+|.++..|++++.   .+.++|+++.+++.|.++    +....+..++...+|
T Consensus        18 ~~~l~~~~~~~~~--~---~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~   89 (202)
T 2kw5_A           18 NDFLVSVANQIPQ--G---KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFD   89 (202)
T ss_dssp             CSSHHHHHHHSCS--S---EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBS
T ss_pred             hHHHHHHHHhCCC--C---CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcC
Confidence            3345555555543  2   899999999999999998754   567889999998888765    456667777889999


Q ss_pred             CCCCceeeeeeccc
Q 038698          263 YPSRAFDMAQCSRC  276 (283)
Q Consensus       263 Fpd~SFDlV~cs~~  276 (283)
                      +++++||+|+|+.+
T Consensus        90 ~~~~~fD~v~~~~~  103 (202)
T 2kw5_A           90 IVADAWEGIVSIFC  103 (202)
T ss_dssp             CCTTTCSEEEEECC
T ss_pred             CCcCCccEEEEEhh
Confidence            99999999999643

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.04  E-value=1.7e-10  Score=100.26  Aligned_cols=82  Identities=15%  Similarity=0.098  Sum_probs=63.7

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC----CCeEEEeccccCC-
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG----VPAVIGVLGTIHL-  261 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg----~~a~~~v~da~rL-  261 (283)
                      ..+++.+.+.++. .+  .+|||||||+|.++..|++...  ..+.++|+++.+++.|+++.    ....+..++.+.+ 
T Consensus        47 ~~~~~~l~~~~~~-~~--~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~  121 (236)
T 1zx0_A           47 TPYMHALAAAASS-KG--GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA  121 (236)
T ss_dssp             HHHHHHHHHHHTT-TC--EEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG
T ss_pred             HHHHHHHHhhcCC-CC--CeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhh
Confidence            4456666666543 23  6899999999999999977543  25778999999999988652    3455667788888 


Q ss_pred             -CCCCCceeeeee
Q 038698          262 -PYPSRAFDMAQC  273 (283)
Q Consensus       262 -PFpd~SFDlV~c  273 (283)
                       ||++++||+|+|
T Consensus       122 ~~~~~~~fD~V~~  134 (236)
T 1zx0_A          122 PTLPDGHFDGILY  134 (236)
T ss_dssp             GGSCTTCEEEEEE
T ss_pred             cccCCCceEEEEE
Confidence             999999999999

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.04  E-value=5.6e-10  Score=94.45  Aligned_cols=70  Identities=21%  Similarity=0.221  Sum_probs=57.8

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeecccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIP  279 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~  279 (283)
                      .+|||||||+|.++..|   +.  ..+.++|+++.+++.|.++.....+..++...+|+++++||+|+|..++-+
T Consensus        38 ~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  107 (211)
T 2gs9_A           38 ESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEF  107 (211)
T ss_dssp             SEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTT
T ss_pred             CeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhh
Confidence            68999999999999887   22  146788999999999988754455666788999999999999999988844

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.04  E-value=4.1e-10  Score=101.11  Aligned_cols=71  Identities=14%  Similarity=0.099  Sum_probs=60.0

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC----------------------CCeEEEeccccCCC
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG----------------------VPAVIGVLGTIHLP  262 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg----------------------~~a~~~v~da~rLP  262 (283)
                      .+|||+|||+|.++.+|++++.   .+.++|+++.+++.|+++.                      ..+.+.++|+..||
T Consensus        70 ~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~  146 (252)
T 2gb4_A           70 LRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP  146 (252)
T ss_dssp             CEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred             CeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence            5899999999999999999864   5778999999999987542                      24567788999999


Q ss_pred             CCC-Cceeeeeeccccc
Q 038698          263 YPS-RAFDMAQCSRCLI  278 (283)
Q Consensus       263 Fpd-~SFDlV~cs~~Li  278 (283)
                      +++ ++||+|++..++.
T Consensus       147 ~~~~~~FD~V~~~~~l~  163 (252)
T 2gb4_A          147 RANIGKFDRIWDRGALV  163 (252)
T ss_dssp             GGCCCCEEEEEESSSTT
T ss_pred             cccCCCEEEEEEhhhhh
Confidence            976 9999999988773

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.04  E-value=4.9e-10  Score=95.16  Aligned_cols=82  Identities=18%  Similarity=0.173  Sum_probs=64.6

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCC
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYP  264 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFp  264 (283)
                      ..+.|.+.++.    ..+|||+|||+|.++..|++++.   .+.++|+++.+++.|.++    +....+...+...+|++
T Consensus        28 ~~~~l~~~~~~----~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~  100 (227)
T 1ve3_A           28 LEPLLMKYMKK----RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFE  100 (227)
T ss_dssp             HHHHHHHSCCS----CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSC
T ss_pred             HHHHHHHhcCC----CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCC
Confidence            34555555543    26899999999999999988754   567889999998888754    34456777788899999


Q ss_pred             CCceeeeeecccc
Q 038698          265 SRAFDMAQCSRCL  277 (283)
Q Consensus       265 d~SFDlV~cs~~L  277 (283)
                      +++||+|+|..++
T Consensus       101 ~~~~D~v~~~~~~  113 (227)
T 1ve3_A          101 DKTFDYVIFIDSI  113 (227)
T ss_dssp             TTCEEEEEEESCG
T ss_pred             CCcEEEEEEcCch
Confidence            9999999999884

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.04  E-value=3.6e-10  Score=99.18  Aligned_cols=69  Identities=17%  Similarity=0.188  Sum_probs=59.9

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeecc-cc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSR-CL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~-~L  277 (283)
                      .+|||||||+|.++..|++++.   .+.++|+++.+++.|.++.....+..++...+|+ +++||+|+|.. ++
T Consensus        52 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l  121 (263)
T 3pfg_A           52 ASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSI  121 (263)
T ss_dssp             CEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGG
T ss_pred             CcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchh
Confidence            6899999999999999999854   4678899999999999875556677789999999 89999999997 66

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.03  E-value=1.7e-10  Score=94.56  Aligned_cols=70  Identities=17%  Similarity=0.154  Sum_probs=58.8

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeeccccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~W  280 (283)
                      .+|||+|||+|.++..|+++.  . .+.++|+++.+++.|.++.....+...+   +|+++++||+|+|..++-++
T Consensus        19 ~~vLDiG~G~G~~~~~l~~~~--~-~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~   88 (170)
T 3i9f_A           19 GVIVDYGCGNGFYCKYLLEFA--T-KLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDM   88 (170)
T ss_dssp             EEEEEETCTTCTTHHHHHTTE--E-EEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTC
T ss_pred             CeEEEECCCCCHHHHHHHhhc--C-eEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhcc
Confidence            689999999999999999875  2 6788999999999998874445555445   89999999999999998554

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.03  E-value=2.4e-10  Score=97.07  Aligned_cols=71  Identities=14%  Similarity=0.082  Sum_probs=60.3

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC-CeEEEeccccCCCCCCCceeeeeecccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV-PAVIGVLGTIHLPYPSRAFDMAQCSRCLIP  279 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~-~a~~~v~da~rLPFpd~SFDlV~cs~~Li~  279 (283)
                      .+|||||||+|.++..|++++.   .+.++|+++.+++.|.++.. ...+..+++..+|++ ++||+|+|..++-+
T Consensus        47 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~  118 (220)
T 3hnr_A           47 GNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHH  118 (220)
T ss_dssp             SEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGG
T ss_pred             CeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhc
Confidence            6899999999999999999843   56789999999999988743 455666789999999 99999999988844

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.03  E-value=4e-10  Score=97.89  Aligned_cols=75  Identities=16%  Similarity=0.001  Sum_probs=60.9

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC-----CeEEEeccccCCCCCCCceeeeeeccccc
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV-----PAVIGVLGTIHLPYPSRAFDMAQCSRCLI  278 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~-----~a~~~v~da~rLPFpd~SFDlV~cs~~Li  278 (283)
                      ..+|||||||+|.++..|+++.  ...+.++|+++.+++.|+++..     ...+...+...+|+++++||+|+|..++.
T Consensus        80 ~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  157 (241)
T 2ex4_A           80 TSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  157 (241)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence            3699999999999999998875  2356788999999999887632     24466678899999999999999998875


Q ss_pred             cc
Q 038698          279 PW  280 (283)
Q Consensus       279 ~W  280 (283)
                      ++
T Consensus       158 ~~  159 (241)
T 2ex4_A          158 HL  159 (241)
T ss_dssp             GS
T ss_pred             hC
Confidence            43

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.02  E-value=1.5e-09  Score=89.11  Aligned_cols=104  Identities=17%  Similarity=0.218  Sum_probs=73.5

Q ss_pred             ecCCeeeeCCCCCCC-CCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH
Q 038698          168 FQGNVFKFPGGGTMF-PQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE  246 (283)
Q Consensus       168 ~~~~~~~Fpgggt~F-~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e  246 (283)
                      ..|..+.|-.+...| +...+...+.|.+.+....+  .+|||+|||+|.++..|++++   ..+.++|+++.+++.|.+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~vLdiG~G~G~~~~~~~~~~---~~v~~~D~~~~~~~~a~~   92 (194)
T 1dus_A           18 LRGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKD--DDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKE   92 (194)
T ss_dssp             ETTEEEEEEEETTSTTTTSCCHHHHHHHHHCCCCTT--CEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHH
T ss_pred             cCCCceEEEeCCCcCCccccchHHHHHHHHcccCCC--CeEEEeCCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHH
Confidence            445566663333333 33334566778888876544  689999999999999998873   356788999999888775


Q ss_pred             c----CCC---eEEEeccccCCCCCCCceeeeeecccc
Q 038698          247 R----GVP---AVIGVLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       247 r----g~~---a~~~v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                      +    +..   ..+...+... ++++++||+|+++..+
T Consensus        93 ~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~  129 (194)
T 1dus_A           93 NIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPI  129 (194)
T ss_dssp             HHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCS
T ss_pred             HHHHcCCCccceEEEECchhc-ccccCCceEEEECCCc
Confidence            4    444   5566667655 5668899999998765

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.01  E-value=3.4e-11  Score=113.44  Aligned_cols=90  Identities=8%  Similarity=0.004  Sum_probs=72.5

Q ss_pred             hhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEE---EeccccCCC
Q 038698          186 ADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVI---GVLGTIHLP  262 (283)
Q Consensus       186 a~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~---~v~da~rLP  262 (283)
                      +..+.+.+.+.+....+  .+|||||||+|.++..|++++.   .+.++|+++.+++.|.+++++...   ...+.+.+|
T Consensus        92 ~~~~~~~l~~~~~~~~~--~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~  166 (416)
T 4e2x_A           92 FAMLARDFLATELTGPD--PFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVR  166 (416)
T ss_dssp             HHHHHHHHHHTTTCSSS--CEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCC--CEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcc
Confidence            35567778787776444  6999999999999999999865   567899999999999988776542   234577889


Q ss_pred             CCCCceeeeeeccccccc
Q 038698          263 YPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       263 Fpd~SFDlV~cs~~Li~W  280 (283)
                      |++++||+|+|..++-++
T Consensus       167 ~~~~~fD~I~~~~vl~h~  184 (416)
T 4e2x_A          167 RTEGPANVIYAANTLCHI  184 (416)
T ss_dssp             HHHCCEEEEEEESCGGGC
T ss_pred             cCCCCEEEEEECChHHhc
Confidence            999999999999998554

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.01  E-value=9.3e-10  Score=91.39  Aligned_cols=83  Identities=17%  Similarity=0.269  Sum_probs=64.5

Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCCCCCC
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLPYPSR  266 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLPFpd~  266 (283)
                      .+.+.++...+  .+|||+|||+|.++..|++++.   .+.++|+++.+++.|.++    +. ...+..++...+|+ ++
T Consensus        23 ~l~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~   96 (199)
T 2xvm_A           23 EVLEAVKVVKP--GKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DR   96 (199)
T ss_dssp             HHHHHTTTSCS--CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CC
T ss_pred             HHHHHhhccCC--CeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CC
Confidence            45555654333  5999999999999999998843   567889999888877653    44 45667778889999 89


Q ss_pred             ceeeeeeccccccc
Q 038698          267 AFDMAQCSRCLIPW  280 (283)
Q Consensus       267 SFDlV~cs~~Li~W  280 (283)
                      +||+|+|..++..+
T Consensus        97 ~~D~v~~~~~l~~~  110 (199)
T 2xvm_A           97 QYDFILSTVVLMFL  110 (199)
T ss_dssp             CEEEEEEESCGGGS
T ss_pred             CceEEEEcchhhhC
Confidence            99999999988543

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.00  E-value=1.2e-09  Score=93.80  Aligned_cols=90  Identities=16%  Similarity=0.190  Sum_probs=69.2

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC---CeEEEeccccCCCCC
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV---PAVIGVLGTIHLPYP  264 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~---~a~~~v~da~rLPFp  264 (283)
                      ...+.+.+.++.. ....+|||||||+|.++..|+++.. ...+.++|+++.+++.|.++-.   ...+..++...+|++
T Consensus        30 ~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~  107 (234)
T 3dtn_A           30 DFYGVSVSIASVD-TENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE  107 (234)
T ss_dssp             HHHHHHHHTCCCS-CSSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC
T ss_pred             HHHHHHHHHhhcC-CCCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC
Confidence            3446666777632 2237899999999999999998732 2356788999999999987622   466777899999998


Q ss_pred             CCceeeeeeccccccc
Q 038698          265 SRAFDMAQCSRCLIPW  280 (283)
Q Consensus       265 d~SFDlV~cs~~Li~W  280 (283)
                       ++||+|+|..++-++
T Consensus       108 -~~fD~v~~~~~l~~~  122 (234)
T 3dtn_A          108 -EKYDMVVSALSIHHL  122 (234)
T ss_dssp             -SCEEEEEEESCGGGS
T ss_pred             -CCceEEEEeCccccC
Confidence             999999999988544

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.00  E-value=1e-09  Score=95.02  Aligned_cols=68  Identities=19%  Similarity=0.213  Sum_probs=58.5

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccc-cCCCCC-CCceeeeeecc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGT-IHLPYP-SRAFDMAQCSR  275 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da-~rLPFp-d~SFDlV~cs~  275 (283)
                      .+|||||||+|.++..|++++.   .+.++|+++.+++.|.++.....+..++. +.+||+ +++||+|+|+.
T Consensus        50 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~  119 (226)
T 3m33_A           50 TRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR  119 (226)
T ss_dssp             CEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES
T ss_pred             CeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC
Confidence            5899999999999999999853   56788999999999998855566777787 789999 99999999973

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.99  E-value=8.8e-10  Score=96.99  Aligned_cols=84  Identities=15%  Similarity=0.198  Sum_probs=65.1

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCce
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAF  268 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SF  268 (283)
                      ..+.+.+.++.   ...+|||||||+|.++..|+++. ....+.++|+++.+++.|.+++....+.+++...+||++++|
T Consensus        74 ~~~~~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~f  149 (269)
T 1p91_A           74 IVAQLRERLDD---KATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSM  149 (269)
T ss_dssp             HHHHHHHHSCT---TCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCE
T ss_pred             HHHHHHHhcCC---CCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCce
Confidence            34444444432   22589999999999999998862 122567889999999999988766677778889999999999


Q ss_pred             eeeeeccc
Q 038698          269 DMAQCSRC  276 (283)
Q Consensus       269 DlV~cs~~  276 (283)
                      |+|+|..+
T Consensus       150 D~v~~~~~  157 (269)
T 1p91_A          150 DAIIRIYA  157 (269)
T ss_dssp             EEEEEESC
T ss_pred             eEEEEeCC
Confidence            99998654

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.99  E-value=1.3e-09  Score=96.01  Aligned_cols=91  Identities=20%  Similarity=0.252  Sum_probs=68.4

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHL  261 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rL  261 (283)
                      ..+.+.+........+  .+|||||||+|.++..|+++.. ...+.++|+++.+++.|.++    ++ ...+...+...+
T Consensus        23 ~~l~~~l~~~~~~~~~--~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~   99 (276)
T 3mgg_A           23 ETLEKLLHHDTVYPPG--AKVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL   99 (276)
T ss_dssp             CHHHHHHHTTCCCCTT--CEEEETTCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGC
T ss_pred             HHHHHHHhhcccCCCC--CeEEEecCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccC
Confidence            3444455554444333  6899999999999999998732 23567889999998888654    44 355777789999


Q ss_pred             CCCCCceeeeeeccccccc
Q 038698          262 PYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       262 PFpd~SFDlV~cs~~Li~W  280 (283)
                      |+++++||+|+|..++.++
T Consensus       100 ~~~~~~fD~v~~~~~l~~~  118 (276)
T 3mgg_A          100 PFEDSSFDHIFVCFVLEHL  118 (276)
T ss_dssp             CSCTTCEEEEEEESCGGGC
T ss_pred             CCCCCCeeEEEEechhhhc
Confidence            9999999999999988543

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.99  E-value=1.1e-09  Score=98.01  Aligned_cols=91  Identities=20%  Similarity=0.227  Sum_probs=67.7

Q ss_pred             hHHHHHHHhhCC-CCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCC
Q 038698          187 DAYIDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHL  261 (283)
Q Consensus       187 ~~Yid~I~~~l~-~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rL  261 (283)
                      ..+++.+.+.+. ...  ..+|||||||+|.++..|+++......+.++|+++.+++.|.++    +.+..+.+.|+..+
T Consensus         7 ~~~~~~~~~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~   84 (284)
T 3gu3_A            7 DDYVSFLVNTVWKITK--PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI   84 (284)
T ss_dssp             HHHHHHHHHTTSCCCS--CCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTC
T ss_pred             hHHHHHHHHHHhccCC--CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhc
Confidence            345666666553 332  36899999999999999988632223567889999999888765    23456777889999


Q ss_pred             CCCCCceeeeeeccccccc
Q 038698          262 PYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       262 PFpd~SFDlV~cs~~Li~W  280 (283)
                      |++ ++||+|+|..++..+
T Consensus        85 ~~~-~~fD~v~~~~~l~~~  102 (284)
T 3gu3_A           85 ELN-DKYDIAICHAFLLHM  102 (284)
T ss_dssp             CCS-SCEEEEEEESCGGGC
T ss_pred             CcC-CCeeEEEECChhhcC
Confidence            995 699999999987543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.97  E-value=1.1e-09  Score=97.34  Aligned_cols=86  Identities=16%  Similarity=0.130  Sum_probs=66.2

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhh-cCCeeEeeccccChHHHHHHHHHc----CC--CeEEEecccc
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLK-RNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTI  259 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~-r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~  259 (283)
                      ...++.+.+.+++..+  .+|||||||+|.++..|++ .+.   .+.++|+++.+++.|.++    +.  ...+...+..
T Consensus        50 ~~~~~~~~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~  124 (287)
T 1kpg_A           50 IAKIDLALGKLGLQPG--MTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE  124 (287)
T ss_dssp             HHHHHHHHTTTTCCTT--CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG
T ss_pred             HHHHHHHHHHcCCCCc--CEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChh
Confidence            4456777777776544  6899999999999999985 333   577889999999988765    33  3556667777


Q ss_pred             CCCCCCCceeeeeeccccccc
Q 038698          260 HLPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       260 rLPFpd~SFDlV~cs~~Li~W  280 (283)
                      .+|   ++||+|+|..++.++
T Consensus       125 ~~~---~~fD~v~~~~~l~~~  142 (287)
T 1kpg_A          125 QFD---EPVDRIVSIGAFEHF  142 (287)
T ss_dssp             GCC---CCCSEEEEESCGGGT
T ss_pred             hCC---CCeeEEEEeCchhhc
Confidence            776   899999999988654

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.97  E-value=1e-09  Score=93.83  Aligned_cols=90  Identities=16%  Similarity=0.153  Sum_probs=68.0

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLP  262 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLP  262 (283)
                      ..+.+.|.+++........+|||||||+|.++..|++++.   .+.++|+++.+++.|.++    +....+..++...+|
T Consensus        21 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~   97 (246)
T 1y8c_A           21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN   97 (246)
T ss_dssp             HHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCC
Confidence            4455666666654211336899999999999999998853   567889999999888765    334566777888999


Q ss_pred             CCCCceeeeeecc-ccccc
Q 038698          263 YPSRAFDMAQCSR-CLIPW  280 (283)
Q Consensus       263 Fpd~SFDlV~cs~-~Li~W  280 (283)
                      ++ ++||+|+|.. ++-++
T Consensus        98 ~~-~~fD~v~~~~~~l~~~  115 (246)
T 1y8c_A           98 IN-RKFDLITCCLDSTNYI  115 (246)
T ss_dssp             CS-CCEEEEEECTTGGGGC
T ss_pred             cc-CCceEEEEcCcccccc
Confidence            88 9999999998 77443

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.97  E-value=1.9e-09  Score=97.25  Aligned_cols=71  Identities=13%  Similarity=0.073  Sum_probs=57.2

Q ss_pred             cEEeecCCCccHHHHHHhhcC-CeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCCCCCCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKRN-VLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~-v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                      .+|||||||+|.++..|+++. .....+.++|++++|++.|+++    +.  ++.+..+++..+|++  .||+|+|..+|
T Consensus        72 ~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~~~l  149 (261)
T 4gek_A           72 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFTL  149 (261)
T ss_dssp             CEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEESCG
T ss_pred             CEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceeeeee
Confidence            589999999999999998752 2344678899999999999765    32  355777889999885  49999999887

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.96  E-value=1.1e-09  Score=98.41  Aligned_cols=86  Identities=16%  Similarity=0.134  Sum_probs=67.1

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc----CCC--eEEEecccc
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTI  259 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~  259 (283)
                      ...++.+.+.+.+..+  .+|||||||+|.++..|+++ +   ..+.++|+++.+++.|.++    ++.  +.+...+..
T Consensus        58 ~~~~~~~~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (302)
T 3hem_A           58 YAKRKLALDKLNLEPG--MTLLDIGCGWGSTMRHAVAEYD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE  132 (302)
T ss_dssp             HHHHHHHHHTTCCCTT--CEEEEETCTTSHHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGG
T ss_pred             HHHHHHHHHHcCCCCc--CEEEEeeccCcHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHH
Confidence            4456777788776555  68999999999999999987 5   3567889999999888765    443  556666776


Q ss_pred             CCCCCCCceeeeeeccccccc
Q 038698          260 HLPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       260 rLPFpd~SFDlV~cs~~Li~W  280 (283)
                      .+   +++||+|+|..++-++
T Consensus       133 ~~---~~~fD~v~~~~~~~~~  150 (302)
T 3hem_A          133 EF---DEPVDRIVSLGAFEHF  150 (302)
T ss_dssp             GC---CCCCSEEEEESCGGGT
T ss_pred             Hc---CCCccEEEEcchHHhc
Confidence            65   8999999999888554

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.96  E-value=8.3e-10  Score=93.58  Aligned_cols=83  Identities=22%  Similarity=0.344  Sum_probs=64.3

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-CCCeEEEeccccCCCCCCC
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-GVPAVIGVLGTIHLPYPSR  266 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-g~~a~~~v~da~rLPFpd~  266 (283)
                      .++..+...++.  +  .+|||||||+|.++..|++++.   .+.++|+++.+++.|.++ ++..  ..++...+| +++
T Consensus        32 ~~~~~~~~~~~~--~--~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~--~~~d~~~~~-~~~  101 (211)
T 3e23_A           32 ATLTKFLGELPA--G--AKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRLGRPV--RTMLFHQLD-AID  101 (211)
T ss_dssp             HHHHHHHTTSCT--T--CEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTSCC--EECCGGGCC-CCS
T ss_pred             HHHHHHHHhcCC--C--CcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhcCCce--EEeeeccCC-CCC
Confidence            344555555542  3  5899999999999999998854   567889999999999877 5443  345788889 899


Q ss_pred             ceeeeeeccccccc
Q 038698          267 AFDMAQCSRCLIPW  280 (283)
Q Consensus       267 SFDlV~cs~~Li~W  280 (283)
                      +||+|+|..++.++
T Consensus       102 ~fD~v~~~~~l~~~  115 (211)
T 3e23_A          102 AYDAVWAHACLLHV  115 (211)
T ss_dssp             CEEEEEECSCGGGS
T ss_pred             cEEEEEecCchhhc
Confidence            99999999988554

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.95  E-value=1.1e-09  Score=97.45  Aligned_cols=73  Identities=15%  Similarity=0.044  Sum_probs=60.5

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCCC-CCCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHLP-YPSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rLP-Fpd~SFDlV~cs~~L  277 (283)
                      .+|||||||+|.++..|++++.   .+.++|+++.+++.|.++    ++  ...+..++...+| +++++||+|+|..++
T Consensus        70 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l  146 (285)
T 4htf_A           70 LRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL  146 (285)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred             CEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence            6899999999999999998843   567889999999888765    43  2456777888998 999999999999988


Q ss_pred             ccc
Q 038698          278 IPW  280 (283)
Q Consensus       278 i~W  280 (283)
                      -++
T Consensus       147 ~~~  149 (285)
T 4htf_A          147 EWV  149 (285)
T ss_dssp             GGC
T ss_pred             hcc
Confidence            443

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.94  E-value=3.8e-10  Score=99.23  Aligned_cols=90  Identities=18%  Similarity=0.166  Sum_probs=64.1

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHH------HHHHHHHc----CC--CeEEE
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEA------QVQFALER----GV--PAVIG  254 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a------~vq~A~er----g~--~a~~~  254 (283)
                      .+.+.|.+.+++..+  .+|||||||+|.++..|+++ +.. ..+.++|+++.      +++.|.++    +.  .+.+.
T Consensus        30 ~~~~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~g~~-~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~  106 (275)
T 3bkx_A           30 AHRLAIAEAWQVKPG--EKILEIGCGQGDLSAVLADQVGSS-GHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVH  106 (275)
T ss_dssp             HHHHHHHHHHTCCTT--CEEEEESCTTSHHHHHHHHHHCTT-CEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEE
T ss_pred             HHHHHHHHHcCCCCC--CEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEE
Confidence            345566677766545  68999999999999999886 221 24566777665      66666543    33  34565


Q ss_pred             ecc---ccCCCCCCCceeeeeeccccccc
Q 038698          255 VLG---TIHLPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       255 v~d---a~rLPFpd~SFDlV~cs~~Li~W  280 (283)
                      .++   ...+||++++||+|+|..++-++
T Consensus       107 ~~d~~~~~~~~~~~~~fD~v~~~~~l~~~  135 (275)
T 3bkx_A          107 FNTNLSDDLGPIADQHFDRVVLAHSLWYF  135 (275)
T ss_dssp             CSCCTTTCCGGGTTCCCSEEEEESCGGGS
T ss_pred             ECChhhhccCCCCCCCEEEEEEccchhhC
Confidence            666   67889999999999999988443

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.93  E-value=2.5e-09  Score=90.84  Aligned_cols=73  Identities=23%  Similarity=0.317  Sum_probs=60.8

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC------CeEEEeccccCCCCCCCceeeeeec
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV------PAVIGVLGTIHLPYPSRAFDMAQCS  274 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~------~a~~~v~da~rLPFpd~SFDlV~cs  274 (283)
                      .+|||+|||+|.++..|++++.   .+.++|+++.+++.|.++    ++      ...+...+...+|+++++||+|+|.
T Consensus        32 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  108 (235)
T 3sm3_A           32 DEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ  108 (235)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred             CeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence            5899999999999999999844   567889999999988874    22      2356677899999999999999999


Q ss_pred             cccccc
Q 038698          275 RCLIPW  280 (283)
Q Consensus       275 ~~Li~W  280 (283)
                      .++..+
T Consensus       109 ~~l~~~  114 (235)
T 3sm3_A          109 AFLTSV  114 (235)
T ss_dssp             SCGGGC
T ss_pred             chhhcC
Confidence            888554

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.92  E-value=3e-09  Score=91.02  Aligned_cols=81  Identities=19%  Similarity=0.146  Sum_probs=62.4

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCce
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAF  268 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SF  268 (283)
                      +.+.|.+.++  .  ..+|||||||+|.++..|+++..   .+.++|+++.+++.|.++.....+..++...+|+ +++|
T Consensus        30 ~~~~l~~~~~--~--~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~  101 (239)
T 3bxo_A           30 IADLVRSRTP--E--ASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKF  101 (239)
T ss_dssp             HHHHHHHHCT--T--CCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCE
T ss_pred             HHHHHHHhcC--C--CCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCC
Confidence            3444554442  2  26899999999999999998743   5678899999999998875456666778888998 7899


Q ss_pred             eeeeecc-cc
Q 038698          269 DMAQCSR-CL  277 (283)
Q Consensus       269 DlV~cs~-~L  277 (283)
                      |+|+|+. ++
T Consensus       102 D~v~~~~~~~  111 (239)
T 3bxo_A          102 SAVVSMFSSV  111 (239)
T ss_dssp             EEEEECTTGG
T ss_pred             cEEEEcCchH
Confidence            9999765 44

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.92  E-value=1.9e-09  Score=90.98  Aligned_cols=82  Identities=20%  Similarity=0.248  Sum_probs=63.5

Q ss_pred             HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccC--CCCCCCce
Q 038698          191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIH--LPYPSRAF  268 (283)
Q Consensus       191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~r--LPFpd~SF  268 (283)
                      +.|.+.++ ..  ..+|||+|||+|.++..|++++   ..+.++|+++.+++.|.++..  .+...+...  +|+++++|
T Consensus        23 ~~l~~~~~-~~--~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~f   94 (230)
T 3cc8_A           23 PNLLKHIK-KE--WKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKLD--HVVLGDIETMDMPYEEEQF   94 (230)
T ss_dssp             HHHHTTCC-TT--CSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTSS--EEEESCTTTCCCCSCTTCE
T ss_pred             HHHHHHhc-cC--CCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCC--cEEEcchhhcCCCCCCCcc
Confidence            35556665 22  3689999999999999999884   357889999999999887653  344456554  88999999


Q ss_pred             eeeeeccccccc
Q 038698          269 DMAQCSRCLIPW  280 (283)
Q Consensus       269 DlV~cs~~Li~W  280 (283)
                      |+|+|..++.++
T Consensus        95 D~v~~~~~l~~~  106 (230)
T 3cc8_A           95 DCVIFGDVLEHL  106 (230)
T ss_dssp             EEEEEESCGGGS
T ss_pred             CEEEECChhhhc
Confidence            999999988544

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.92  E-value=3.5e-10  Score=112.30  Aligned_cols=72  Identities=15%  Similarity=0.186  Sum_probs=60.6

Q ss_pred             CccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cC-CCeEEEeccccCC--CCCCCceeeeeecc
Q 038698          203 SVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RG-VPAVIGVLGTIHL--PYPSRAFDMAQCSR  275 (283)
Q Consensus       203 ~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg-~~a~~~v~da~rL--PFpd~SFDlV~cs~  275 (283)
                      .+.+|||||||+|.++..|++++.   ++.|+|.++.+|+.|+.    .| .++.+.+.+++.|  ++.+++||+|+|..
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga---~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e  142 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGA---TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS  142 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCC---EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence            346899999999999999999865   46789999999988764    34 4566778888888  78899999999999


Q ss_pred             cc
Q 038698          276 CL  277 (283)
Q Consensus       276 ~L  277 (283)
                      +|
T Consensus       143 ~~  144 (569)
T 4azs_A          143 VF  144 (569)
T ss_dssp             CH
T ss_pred             ch
Confidence            87

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.92  E-value=2.4e-09  Score=90.04  Aligned_cols=73  Identities=14%  Similarity=0.096  Sum_probs=57.0

Q ss_pred             cEEeecCCCccHH-HHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCCCceeeeeecccccc
Q 038698          205 RTALDTGCGVASW-GAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIP  279 (283)
Q Consensus       205 r~VLDVGCGtGsf-aa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~  279 (283)
                      .+|||+|||+|.+ ...|.+.+.   .+.++|+++.+++.|.++    +....+..+++..+|+++++||+|+|..++-+
T Consensus        25 ~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  101 (209)
T 2p8j_A           25 KTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFH  101 (209)
T ss_dssp             SEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGG
T ss_pred             CEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHh
Confidence            6899999999987 455555543   567889999998887654    44455666788899999999999999988755


Q ss_pred             c
Q 038698          280 W  280 (283)
Q Consensus       280 W  280 (283)
                      +
T Consensus       102 ~  102 (209)
T 2p8j_A          102 M  102 (209)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.91  E-value=1.7e-09  Score=97.16  Aligned_cols=87  Identities=10%  Similarity=-0.011  Sum_probs=66.5

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----C----CCeEEEecccc
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----G----VPAVIGVLGTI  259 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g----~~a~~~v~da~  259 (283)
                      ...+.+.+.++...   .+|||||||+|.++..|++++.   .+.++|+++.+++.|+++    +    ..+.+.+++..
T Consensus        70 ~~~~~~~~~~~~~~---~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~  143 (299)
T 3g2m_A           70 SEAREFATRTGPVS---GPVLELAAGMGRLTFPFLDLGW---EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS  143 (299)
T ss_dssp             HHHHHHHHHHCCCC---SCEEEETCTTTTTHHHHHTTTC---CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT
T ss_pred             HHHHHHHHhhCCCC---CcEEEEeccCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh
Confidence            34556666665433   3899999999999999999853   567889999999988765    2    34667778999


Q ss_pred             CCCCCCCceeeeeecccccccc
Q 038698          260 HLPYPSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       260 rLPFpd~SFDlV~cs~~Li~W~  281 (283)
                      .+|+ +++||+|+|+..+.+|.
T Consensus       144 ~~~~-~~~fD~v~~~~~~~~~~  164 (299)
T 3g2m_A          144 AFAL-DKRFGTVVISSGSINEL  164 (299)
T ss_dssp             BCCC-SCCEEEEEECHHHHTTS
T ss_pred             cCCc-CCCcCEEEECCcccccC
Confidence            9998 79999999876555553

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.91  E-value=2.1e-09  Score=92.76  Aligned_cols=72  Identities=17%  Similarity=0.021  Sum_probs=58.3

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC------CeEEEeccccCCCCCCCceeeeeeccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV------PAVIGVLGTIHLPYPSRAFDMAQCSRCLI  278 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~------~a~~~v~da~rLPFpd~SFDlV~cs~~Li  278 (283)
                      .+|||||||+|.++..|++.+   ..+.++|+++.+++.|.++..      ...+..++...++ ++++||+|+|..++.
T Consensus        68 ~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~  143 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMASPE---RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFC  143 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCBTT---EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTT
T ss_pred             CCEEEeCCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhh
Confidence            489999999999999998864   357789999999999887632      2567777888887 567999999999885


Q ss_pred             cc
Q 038698          279 PW  280 (283)
Q Consensus       279 ~W  280 (283)
                      .+
T Consensus       144 ~~  145 (235)
T 3lcc_A          144 AI  145 (235)
T ss_dssp             TS
T ss_pred             cC
Confidence            44

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.90  E-value=2.4e-09  Score=97.61  Aligned_cols=87  Identities=14%  Similarity=0.030  Sum_probs=64.2

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCC----
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPY----  263 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPF----  263 (283)
                      ..++.+.+.+++..+  .+|||||||+|.++..|++++.   .+.++|++++|++.|+++-... ....+...+++    
T Consensus        32 ~~~~~il~~l~l~~g--~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~~~~  105 (261)
T 3iv6_A           32 SDRENDIFLENIVPG--STVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADR-CVTIDLLDITAEIPK  105 (261)
T ss_dssp             CHHHHHHHTTTCCTT--CEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSS-CCEEEECCTTSCCCG
T ss_pred             HHHHHHHHhcCCCCc--CEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhc-cceeeeeeccccccc
Confidence            356677778876555  6899999999999999999854   5678999999999998763222 11223334433    


Q ss_pred             -CCCceeeeeeccccccc
Q 038698          264 -PSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       264 -pd~SFDlV~cs~~Li~W  280 (283)
                       .+++||+|+|+.++-+|
T Consensus       106 ~~~~~fD~Vv~~~~l~~~  123 (261)
T 3iv6_A          106 ELAGHFDFVLNDRLINRF  123 (261)
T ss_dssp             GGTTCCSEEEEESCGGGS
T ss_pred             ccCCCccEEEEhhhhHhC
Confidence             36899999999888555

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.89  E-value=4.1e-09  Score=86.55  Aligned_cols=70  Identities=21%  Similarity=0.243  Sum_probs=59.2

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeec-ccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCS-RCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs-~~L  277 (283)
                      .+|||+|||+|.++..|++++.   .+.++|+++.+++.|.++.....+...+...+|+++++||+|+|. .++
T Consensus        48 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~  118 (195)
T 3cgg_A           48 AKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVM  118 (195)
T ss_dssp             CEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCG
T ss_pred             CeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHH
Confidence            5899999999999999998753   567889999999999887555566677888899999999999998 444

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.89  E-value=3.1e-09  Score=91.15  Aligned_cols=76  Identities=17%  Similarity=0.286  Sum_probs=60.2

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCcee
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFD  269 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFD  269 (283)
                      ++.|.+.++   +  .+|||||||+|.++..|+++       .++|+++.+++.|.+++  ..+...+...+|+++++||
T Consensus        39 ~~~l~~~~~---~--~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~--~~~~~~d~~~~~~~~~~fD  104 (219)
T 1vlm_A           39 LQAVKCLLP---E--GRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRG--VFVLKGTAENLPLKDESFD  104 (219)
T ss_dssp             HHHHHHHCC---S--SCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTT--CEEEECBTTBCCSCTTCEE
T ss_pred             HHHHHHhCC---C--CcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcC--CEEEEcccccCCCCCCCee
Confidence            344555554   2  58999999999999998876       46788999999998874  4455668889999999999


Q ss_pred             eeeecccccc
Q 038698          270 MAQCSRCLIP  279 (283)
Q Consensus       270 lV~cs~~Li~  279 (283)
                      +|+|..++-.
T Consensus       105 ~v~~~~~l~~  114 (219)
T 1vlm_A          105 FALMVTTICF  114 (219)
T ss_dssp             EEEEESCGGG
T ss_pred             EEEEcchHhh
Confidence            9999988743

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.89  E-value=2.5e-09  Score=112.01  Aligned_cols=92  Identities=16%  Similarity=0.129  Sum_probs=71.6

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----------CC-CeEEEe
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----------GV-PAVIGV  255 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----------g~-~a~~~v  255 (283)
                      ...++.+.+.+....+  .+|||||||+|.++..|+++......+.++|+++.+++.|+++          +. .+.+.+
T Consensus       707 eqRle~LLelL~~~~g--~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiq  784 (950)
T 3htx_A          707 KQRVEYALKHIRESSA--STLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYD  784 (950)
T ss_dssp             HHHHHHHHHHHHHSCC--SEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEE
T ss_pred             HHHHHHHHHHhcccCC--CEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEE
Confidence            3446666676654333  6899999999999999998752224678899999999998762          33 355778


Q ss_pred             ccccCCCCCCCceeeeeeccccccc
Q 038698          256 LGTIHLPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       256 ~da~rLPFpd~SFDlV~cs~~Li~W  280 (283)
                      +++..+|+++++||+|+|..++.+.
T Consensus       785 GDa~dLp~~d~sFDlVV~~eVLeHL  809 (950)
T 3htx_A          785 GSILEFDSRLHDVDIGTCLEVIEHM  809 (950)
T ss_dssp             SCTTSCCTTSCSCCEEEEESCGGGS
T ss_pred             CchHhCCcccCCeeEEEEeCchhhC
Confidence            8999999999999999999988543

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.88  E-value=6.8e-09  Score=90.04  Aligned_cols=68  Identities=19%  Similarity=0.227  Sum_probs=55.8

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCCCceeeeeeccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPSRAFDMAQCSRC  276 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd~SFDlV~cs~~  276 (283)
                      .+|||+|||+|.++..|++++.   .+.++|+++.+++.|+++    +....+..++...+|++ ++||+|+|...
T Consensus        43 ~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~  114 (252)
T 1wzn_A           43 RRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFS  114 (252)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSS
T ss_pred             CEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCC
Confidence            6899999999999999998854   567889999999888654    45566777788889886 78999998643

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.87  E-value=2.1e-09  Score=96.64  Aligned_cols=75  Identities=11%  Similarity=0.022  Sum_probs=51.7

Q ss_pred             ccEEeecCCCccHHHHH----Hhhc--CCeeEeeccccChHHHHHHHHHc-----CCC-eE--EEeccccCCC------C
Q 038698          204 VRTALDTGCGVASWGAY----LLKR--NVLTMSFAPRDNHEAQVQFALER-----GVP-AV--IGVLGTIHLP------Y  263 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~----L~~r--~v~~~sla~~D~s~a~vq~A~er-----g~~-a~--~~v~da~rLP------F  263 (283)
                      ..+|||||||+|.++..    |+++  ++ .+.+.++|.+++|++.|+++     +++ ..  +..++++.++      |
T Consensus        53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~-~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (292)
T 2aot_A           53 EIKILSIGGGAGEIDLQILSKVQAQYPGV-CINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK  131 (292)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTC-EEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred             CCeEEEEcCCCCHHHHHHHHHHHhhCCCc-eeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence            46899999999976543    3333  22 12347889999999988765     332 22  3344555554      7


Q ss_pred             CCCceeeeeecccccc
Q 038698          264 PSRAFDMAQCSRCLIP  279 (283)
Q Consensus       264 pd~SFDlV~cs~~Li~  279 (283)
                      ++++||+|+|+.+|-+
T Consensus       132 ~~~~fD~V~~~~~l~~  147 (292)
T 2aot_A          132 ELQKWDFIHMIQMLYY  147 (292)
T ss_dssp             CCCCEEEEEEESCGGG
T ss_pred             CCCceeEEEEeeeeee
Confidence            8999999999999943

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.87  E-value=3.6e-09  Score=94.04  Aligned_cols=71  Identities=17%  Similarity=0.250  Sum_probs=59.6

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCCCceeeeeecccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIP  279 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~  279 (283)
                      .+|||+|||+|.++..|++++.   .+.++|+++.+++.|+++    +..+.+...+...+++ +++||+|+|+.++..
T Consensus       122 ~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~  196 (286)
T 3m70_A          122 CKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMF  196 (286)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGG
T ss_pred             CcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhh
Confidence            5899999999999999999854   567889999998877654    5566777788889888 899999999988743

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.86  E-value=3e-09  Score=88.33  Aligned_cols=68  Identities=18%  Similarity=0.156  Sum_probs=53.0

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCC-CCCCceeeeeecc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLP-YPSRAFDMAQCSR  275 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLP-Fpd~SFDlV~cs~  275 (283)
                      .+|||+|||+|.++..|++++   ..+.++|+++++++.|+++    ++ ...+...+.+.++ +++++||+|+++.
T Consensus        24 ~~vLDiGcG~G~~~~~la~~~---~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~   97 (185)
T 3mti_A           24 SIVVDATMGNGNDTAFLAGLS---KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL   97 (185)
T ss_dssp             CEEEESCCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred             CEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence            689999999999999999873   3567889999999888654    44 3445555666654 6789999999873

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.86  E-value=4.6e-09  Score=94.96  Aligned_cols=86  Identities=17%  Similarity=0.147  Sum_probs=66.2

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc----CC--CeEEEecccc
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTI  259 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~  259 (283)
                      ...++.+.+.++...+  .+|||||||+|.++..|+++ +.   .+.++|+++.+++.|.++    ++  ...+...+..
T Consensus        76 ~~~~~~~~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  150 (318)
T 2fk8_A           76 YAKVDLNLDKLDLKPG--MTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE  150 (318)
T ss_dssp             HHHHHHHHTTSCCCTT--CEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG
T ss_pred             HHHHHHHHHhcCCCCc--CEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChH
Confidence            3456677777776544  68999999999999999886 43   567889999999988765    43  2556667777


Q ss_pred             CCCCCCCceeeeeeccccccc
Q 038698          260 HLPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       260 rLPFpd~SFDlV~cs~~Li~W  280 (283)
                      .+|   ++||+|+|..++.+.
T Consensus       151 ~~~---~~fD~v~~~~~l~~~  168 (318)
T 2fk8_A          151 DFA---EPVDRIVSIEAFEHF  168 (318)
T ss_dssp             GCC---CCCSEEEEESCGGGT
T ss_pred             HCC---CCcCEEEEeChHHhc
Confidence            776   899999999888443

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.86  E-value=6.8e-09  Score=88.97  Aligned_cols=82  Identities=18%  Similarity=0.223  Sum_probs=64.5

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLP  262 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLP  262 (283)
                      ..+.+.|.+.++.  +  .+|||||||+|.++..|+++    ..+.++|+++.+++.|.++    +....+...+...+|
T Consensus        21 ~~~~~~~~~~~~~--~--~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~   92 (243)
T 3d2l_A           21 PEWVAWVLEQVEP--G--KRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELE   92 (243)
T ss_dssp             HHHHHHHHHHSCT--T--CEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC
T ss_pred             HHHHHHHHHHcCC--C--CeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcC
Confidence            4456677777754  3  68999999999999999887    3567889999999888754    344566677888899


Q ss_pred             CCCCceeeeeecc-cc
Q 038698          263 YPSRAFDMAQCSR-CL  277 (283)
Q Consensus       263 Fpd~SFDlV~cs~-~L  277 (283)
                      ++ ++||+|+|.. ++
T Consensus        93 ~~-~~fD~v~~~~~~~  107 (243)
T 3d2l_A           93 LP-EPVDAITILCDSL  107 (243)
T ss_dssp             CS-SCEEEEEECTTGG
T ss_pred             CC-CCcCEEEEeCCch
Confidence            87 8999999976 55

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.86  E-value=1.4e-09  Score=91.58  Aligned_cols=82  Identities=20%  Similarity=0.250  Sum_probs=60.1

Q ss_pred             HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCC---CCCCCc
Q 038698          191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHL---PYPSRA  267 (283)
Q Consensus       191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rL---PFpd~S  267 (283)
                      ..+.+.+....+  .+|||||||+|.++..|++++.   .+.++|+++.+++.|.+++ ...+...+...+   |++++.
T Consensus        42 ~~~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~  115 (227)
T 3e8s_A           42 QAILLAILGRQP--ERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAAG-AGEVHLASYAQLAEAKVPVGK  115 (227)
T ss_dssp             HHHHHHHHHTCC--SEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHTC-SSCEEECCHHHHHTTCSCCCC
T ss_pred             HHHHHHhhcCCC--CEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHhc-ccccchhhHHhhcccccccCC
Confidence            344455543333  6899999999999999999854   5678899999999999873 233344455455   766555


Q ss_pred             -eeeeeeccccc
Q 038698          268 -FDMAQCSRCLI  278 (283)
Q Consensus       268 -FDlV~cs~~Li  278 (283)
                       ||+|+|+.++.
T Consensus       116 ~fD~v~~~~~l~  127 (227)
T 3e8s_A          116 DYDLICANFALL  127 (227)
T ss_dssp             CEEEEEEESCCC
T ss_pred             CccEEEECchhh
Confidence             99999998885

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.85  E-value=3.4e-09  Score=88.87  Aligned_cols=102  Identities=16%  Similarity=0.172  Sum_probs=68.4

Q ss_pred             CCeeeeCCCCCCCCCchhHHHHHHHhhCCC---CCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH
Q 038698          170 GNVFKFPGGGTMFPQGADAYIDELASVIPI---KDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE  246 (283)
Q Consensus       170 ~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~---~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e  246 (283)
                      |-.+..|..+  +....+...+.+.+.+..   ..+  .+|||+|||+|.++..+++++.  ..+.++|+++.+++.|++
T Consensus        12 g~~l~~~~~~--~rp~~~~~~~~l~~~l~~~~~~~~--~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~   85 (189)
T 3p9n_A           12 GRRIAVPPRG--TRPTTDRVRESLFNIVTARRDLTG--LAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIAR   85 (189)
T ss_dssp             TCEEECCSCC--C---CHHHHHHHHHHHHHHSCCTT--CEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHH
T ss_pred             CcEecCCCCC--CccCcHHHHHHHHHHHHhccCCCC--CEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHH
Confidence            4566666622  222335555555555532   223  6899999999999998887643  246788999998888765


Q ss_pred             c----CC-CeEEEeccccCCC--CCCCceeeeeecccc
Q 038698          247 R----GV-PAVIGVLGTIHLP--YPSRAFDMAQCSRCL  277 (283)
Q Consensus       247 r----g~-~a~~~v~da~rLP--Fpd~SFDlV~cs~~L  277 (283)
                      +    ++ ...+..+|+..++  +++++||+|++...+
T Consensus        86 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~  123 (189)
T 3p9n_A           86 NIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY  123 (189)
T ss_dssp             HHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred             HHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence            3    54 4556677776664  568999999997654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.84  E-value=3.1e-09  Score=99.98  Aligned_cols=75  Identities=19%  Similarity=0.038  Sum_probs=60.3

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc---------C----CCeEEEeccccCC------CCCC
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER---------G----VPAVIGVLGTIHL------PYPS  265 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er---------g----~~a~~~v~da~rL------PFpd  265 (283)
                      .+|||||||+|.++..|+++......+.++|+++.+++.|.++         |    ..+.+..+++..+      ||++
T Consensus        85 ~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~~  164 (383)
T 4fsd_A           85 ATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPD  164 (383)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCCT
T ss_pred             CEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCCC
Confidence            6899999999999998887521123567889999999988865         4    3566777788887      9999


Q ss_pred             Cceeeeeecccccc
Q 038698          266 RAFDMAQCSRCLIP  279 (283)
Q Consensus       266 ~SFDlV~cs~~Li~  279 (283)
                      ++||+|+|+.++..
T Consensus       165 ~~fD~V~~~~~l~~  178 (383)
T 4fsd_A          165 SSVDIVISNCVCNL  178 (383)
T ss_dssp             TCEEEEEEESCGGG
T ss_pred             CCEEEEEEccchhc
Confidence            99999999998843

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.84  E-value=4e-09  Score=95.34  Aligned_cols=75  Identities=12%  Similarity=-0.005  Sum_probs=59.8

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCCCCCCCceeeeeeccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLPYPSRAFDMAQCSRCLI  278 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLPFpd~SFDlV~cs~~Li  278 (283)
                      .+|||||||+|.++..|+........+.++|+++.+++.|+++    +..  ..+..+++..+|++ ++||+|+|..++.
T Consensus       120 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~  198 (305)
T 3ocj_A          120 CVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGLNI  198 (305)
T ss_dssp             CEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSSGG
T ss_pred             CEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECChhh
Confidence            6899999999999999853322234678899999999988765    332  56777899999998 9999999999886


Q ss_pred             cc
Q 038698          279 PW  280 (283)
Q Consensus       279 ~W  280 (283)
                      ++
T Consensus       199 ~~  200 (305)
T 3ocj_A          199 YE  200 (305)
T ss_dssp             GC
T ss_pred             hc
Confidence            55

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.83  E-value=7.9e-09  Score=87.47  Aligned_cols=85  Identities=11%  Similarity=0.027  Sum_probs=66.5

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCC
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLP  262 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLP  262 (283)
                      .....+.+.+....+  .+|||||||+|.++..|++++   ..+.++|+++.+++.|+++    +.+ ..+..++....+
T Consensus        64 ~~~~~~~~~l~~~~~--~~vLdiG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  138 (210)
T 3lbf_A           64 YMVARMTELLELTPQ--SRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW  138 (210)
T ss_dssp             HHHHHHHHHTTCCTT--CEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred             HHHHHHHHhcCCCCC--CEEEEEcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC
Confidence            345566777776544  689999999999999999873   3567889999998888754    443 556677888888


Q ss_pred             CCCCceeeeeecccc
Q 038698          263 YPSRAFDMAQCSRCL  277 (283)
Q Consensus       263 Fpd~SFDlV~cs~~L  277 (283)
                      .++++||+|++..++
T Consensus       139 ~~~~~~D~i~~~~~~  153 (210)
T 3lbf_A          139 QARAPFDAIIVTAAP  153 (210)
T ss_dssp             GGGCCEEEEEESSBC
T ss_pred             ccCCCccEEEEccch
Confidence            888999999998776

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.82  E-value=1.2e-08  Score=86.30  Aligned_cols=69  Identities=19%  Similarity=0.136  Sum_probs=52.6

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCCCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                      .+|||+|||+|.++..|++.+.  ..+.++|+++.+++.|+++    +.. ..+...+.  +++.+++||+|+|+..+
T Consensus        62 ~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~~~fD~i~~~~~~  135 (205)
T 3grz_A           62 LTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSL--LADVDGKFDLIVANILA  135 (205)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESST--TTTCCSCEEEEEEESCH
T ss_pred             CEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccc--cccCCCCceEEEECCcH
Confidence            6899999999999999888643  2567889999998888754    544 44555554  45668999999997654

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.82  E-value=2.9e-09  Score=88.91  Aligned_cols=65  Identities=14%  Similarity=0.110  Sum_probs=52.4

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeeccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLI  278 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~Li  278 (283)
                      .+|||+|||+|.++..|+++.    .+.++|+++.+++.    .....+..+++.. |+++++||+|+|+..+.
T Consensus        25 ~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~----~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~   89 (170)
T 3q87_B           25 KIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES----HRGGNLVRADLLC-SINQESVDVVVFNPPYV   89 (170)
T ss_dssp             CEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT----CSSSCEEECSTTT-TBCGGGCSEEEECCCCB
T ss_pred             CeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc----ccCCeEEECChhh-hcccCCCCEEEECCCCc
Confidence            489999999999999999986    67789999998876    2223455567766 88889999999987664

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.80  E-value=3.2e-09  Score=96.17  Aligned_cols=74  Identities=19%  Similarity=0.227  Sum_probs=57.9

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC-----------C-CeEEEeccccCCC----CC--CC
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG-----------V-PAVIGVLGTIHLP----YP--SR  266 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg-----------~-~a~~~v~da~rLP----Fp--d~  266 (283)
                      .+|||||||+|.++..|++...  ..+.++|+++.+++.|.++.           . .+.+.++|...+|    |+  ++
T Consensus        36 ~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~  113 (313)
T 3bgv_A           36 ITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM  113 (313)
T ss_dssp             CEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred             CEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence            6899999999999999987532  35678899999998887651           1 3456677888886    74  55


Q ss_pred             ceeeeeecccccccc
Q 038698          267 AFDMAQCSRCLIPWT  281 (283)
Q Consensus       267 SFDlV~cs~~Li~W~  281 (283)
                      +||+|+|+.++ +|.
T Consensus       114 ~fD~V~~~~~l-~~~  127 (313)
T 3bgv_A          114 CFDICSCQFVC-HYS  127 (313)
T ss_dssp             CEEEEEEETCG-GGG
T ss_pred             CEEEEEEecch-hhc
Confidence            99999999987 664

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.80  E-value=6.2e-09  Score=89.22  Aligned_cols=102  Identities=14%  Similarity=0.088  Sum_probs=68.3

Q ss_pred             CCeeeeCCCCCCCCCchhHHHHHHHhhCCCC-CCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-
Q 038698          170 GNVFKFPGGGTMFPQGADAYIDELASVIPIK-DGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-  247 (283)
Q Consensus       170 ~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~~-~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-  247 (283)
                      |-++..|.|.. +....+...+.+.+++... .+  .+|||+|||+|.++..+++++..  .+.++|+++.+++.|+++ 
T Consensus        23 g~~l~~~~~~~-~rp~~~~~~~~l~~~l~~~~~~--~~vLDlgcG~G~~~~~l~~~~~~--~V~~vD~s~~~l~~a~~~~   97 (202)
T 2fpo_A           23 GRKLPVPDSPG-LRPTTDRVRETLFNWLAPVIVD--AQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNL   97 (202)
T ss_dssp             TCEEECCCC-------CHHHHHHHHHHHHHHHTT--CEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHH
T ss_pred             CcEecCCCCCC-CCCCHHHHHHHHHHHHHhhcCC--CeEEEeCCCcCHHHHHHHhcCCC--EEEEEECCHHHHHHHHHHH
Confidence            34455555422 2223355566666666431 23  58999999999999987777532  567889999999888653 


Q ss_pred             ---CC-CeEEEeccccC-CCCCCCceeeeeeccc
Q 038698          248 ---GV-PAVIGVLGTIH-LPYPSRAFDMAQCSRC  276 (283)
Q Consensus       248 ---g~-~a~~~v~da~r-LPFpd~SFDlV~cs~~  276 (283)
                         ++ .+.+..+|+.. +|+.+++||+|++...
T Consensus        98 ~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p  131 (202)
T 2fpo_A           98 ATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP  131 (202)
T ss_dssp             HHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred             HHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCC
Confidence               44 45566677665 6888899999998755

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.80  E-value=1.3e-08  Score=83.27  Aligned_cols=86  Identities=17%  Similarity=0.062  Sum_probs=60.8

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccc-cCCC
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGT-IHLP  262 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da-~rLP  262 (283)
                      ....+.+.+....+  .+|||+|||+|.++..|+++. ....+.++|+++.+++.|+++    +.+ ..+...+. +.+|
T Consensus        13 ~~~~~~~~~~~~~~--~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~   89 (178)
T 3hm2_A           13 VRALAISALAPKPH--ETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFD   89 (178)
T ss_dssp             HHHHHHHHHCCCTT--EEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGG
T ss_pred             HHHHHHHHhcccCC--CeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhh
Confidence            44556666665444  689999999999999998873 234678899999999888754    444 22444454 4455


Q ss_pred             CCCCceeeeeecccc
Q 038698          263 YPSRAFDMAQCSRCL  277 (283)
Q Consensus       263 Fpd~SFDlV~cs~~L  277 (283)
                      ..+++||+|++..++
T Consensus        90 ~~~~~~D~i~~~~~~  104 (178)
T 3hm2_A           90 DVPDNPDVIFIGGGL  104 (178)
T ss_dssp             GCCSCCSEEEECC-T
T ss_pred             ccCCCCCEEEECCcc
Confidence            554999999998876

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.80  E-value=1.1e-08  Score=87.89  Aligned_cols=86  Identities=9%  Similarity=0.016  Sum_probs=64.9

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC---CeEEEeccccCCCCC
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV---PAVIGVLGTIHLPYP  264 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~---~a~~~v~da~rLPFp  264 (283)
                      ..++.+.+.+....+  .+|||||||+|.++..|++..   ..+.++|+++.+++.|.++..   ...+..++......+
T Consensus        57 ~~~~~~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~  131 (231)
T 1vbf_A           57 NLGIFMLDELDLHKG--QKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEE  131 (231)
T ss_dssp             HHHHHHHHHTTCCTT--CEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGG
T ss_pred             HHHHHHHHhcCCCCC--CEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCccccccc
Confidence            345667777766444  589999999999999999875   356788999999998887621   455666676663335


Q ss_pred             CCceeeeeeccccc
Q 038698          265 SRAFDMAQCSRCLI  278 (283)
Q Consensus       265 d~SFDlV~cs~~Li  278 (283)
                      +++||+|++..++-
T Consensus       132 ~~~fD~v~~~~~~~  145 (231)
T 1vbf_A          132 EKPYDRVVVWATAP  145 (231)
T ss_dssp             GCCEEEEEESSBBS
T ss_pred             CCCccEEEECCcHH
Confidence            78999999998874

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.80  E-value=1.7e-08  Score=96.23  Aligned_cols=88  Identities=14%  Similarity=0.047  Sum_probs=65.8

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLP  262 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLP  262 (283)
                      ...++.+.+.+........+|||+|||+|.++..|++++.   .+.++|+++.+++.|+++    ++.+.+...|+..++
T Consensus       217 ~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~  293 (381)
T 3dmg_A          217 LLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEAL  293 (381)
T ss_dssp             HHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTS
T ss_pred             HHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhcc
Confidence            3345555555431111225899999999999999999854   567889999998887653    555667778899998


Q ss_pred             CCCCceeeeeecccc
Q 038698          263 YPSRAFDMAQCSRCL  277 (283)
Q Consensus       263 Fpd~SFDlV~cs~~L  277 (283)
                      +++++||+|+|+..+
T Consensus       294 ~~~~~fD~Ii~npp~  308 (381)
T 3dmg_A          294 TEEARFDIIVTNPPF  308 (381)
T ss_dssp             CTTCCEEEEEECCCC
T ss_pred             ccCCCeEEEEECCch
Confidence            888999999998665

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.79  E-value=6.4e-09  Score=84.75  Aligned_cols=84  Identities=12%  Similarity=0.112  Sum_probs=63.5

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHL  261 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rL  261 (283)
                      ....+.+.+.+....+  .+|||+|||+|.++..|++.+   ..+.++|+++.+++.|.++    +. ...+...+... 
T Consensus        21 ~~~~~~~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-   94 (183)
T 2yxd_A           21 EEIRAVSIGKLNLNKD--DVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-   94 (183)
T ss_dssp             HHHHHHHHHHHCCCTT--CEEEEESCCCSHHHHHHHTTS---SEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-
T ss_pred             HHHHHHHHHHcCCCCC--CEEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-
Confidence            4455667777765444  689999999999999998842   3567889999998888754    43 35566667666 


Q ss_pred             CCCCCceeeeeeccc
Q 038698          262 PYPSRAFDMAQCSRC  276 (283)
Q Consensus       262 PFpd~SFDlV~cs~~  276 (283)
                      ++++++||+|+|..+
T Consensus        95 ~~~~~~~D~i~~~~~  109 (183)
T 2yxd_A           95 VLDKLEFNKAFIGGT  109 (183)
T ss_dssp             HGGGCCCSEEEECSC
T ss_pred             cccCCCCcEEEECCc
Confidence            888899999999865

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.79  E-value=5.4e-09  Score=91.98  Aligned_cols=81  Identities=16%  Similarity=0.087  Sum_probs=60.5

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccC--C
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIH--L  261 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~r--L  261 (283)
                      .|.+.+++.+... |  .+|||||||+|..+.+|+++..  -++.++|+++.+++.|+++    +....+..++++.  .
T Consensus        48 ~~m~~~a~~~~~~-G--~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~  122 (236)
T 3orh_A           48 PYMHALAAAASSK-G--GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAP  122 (236)
T ss_dssp             HHHHHHHHHHTTT-C--EEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGG
T ss_pred             HHHHHHHHhhccC-C--CeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcc
Confidence            4666777777643 3  5899999999999999988754  3567899999999999865    3334454455443  4


Q ss_pred             CCCCCceeeeee
Q 038698          262 PYPSRAFDMAQC  273 (283)
Q Consensus       262 PFpd~SFDlV~c  273 (283)
                      ++++++||.|++
T Consensus       123 ~~~~~~FD~i~~  134 (236)
T 3orh_A          123 TLPDGHFDGILY  134 (236)
T ss_dssp             GSCTTCEEEEEE
T ss_pred             cccccCCceEEE
Confidence            799999999975

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.77  E-value=1.2e-08  Score=84.10  Aligned_cols=103  Identities=16%  Similarity=0.093  Sum_probs=70.6

Q ss_pred             CCeeeeCCCCCCCCCchhHHHHHHHhhCC-CCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-
Q 038698          170 GNVFKFPGGGTMFPQGADAYIDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-  247 (283)
Q Consensus       170 ~~~~~Fpgggt~F~~ga~~Yid~I~~~l~-~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-  247 (283)
                      |.+|.+|.|. ......+.+.+.+.+.+. ...+  .+|||+|||+|.++..+++++.  ..+.++|+++.+++.|+++ 
T Consensus        13 ~~~~~~~~~~-~~rp~~~~~~~~~~~~l~~~~~~--~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~   87 (187)
T 2fhp_A           13 GRRLKALDGD-NTRPTTDKVKESIFNMIGPYFDG--GMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENI   87 (187)
T ss_dssp             TCBCCCCCCC-SSCCCCHHHHHHHHHHHCSCCSS--CEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHH
T ss_pred             CccccCCCCC-CcCcCHHHHHHHHHHHHHhhcCC--CCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHH
Confidence            4556666654 333345677777777774 2233  6899999999999998887642  2567889999988887643 


Q ss_pred             ---CC--CeEEEeccccC----CCCCCCceeeeeecccc
Q 038698          248 ---GV--PAVIGVLGTIH----LPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       248 ---g~--~a~~~v~da~r----LPFpd~SFDlV~cs~~L  277 (283)
                         ++  ...+..+++..    +|+++++||+|++...+
T Consensus        88 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~  126 (187)
T 2fhp_A           88 AITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPY  126 (187)
T ss_dssp             HHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCG
T ss_pred             HHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCC
Confidence               43  24565666544    34558999999997653

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.77  E-value=2.5e-08  Score=88.26  Aligned_cols=88  Identities=17%  Similarity=0.144  Sum_probs=65.2

Q ss_pred             CCCchhHHHHHHHhhCCCC-CCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEE
Q 038698          182 FPQGADAYIDELASVIPIK-DGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIG  254 (283)
Q Consensus       182 F~~ga~~Yid~I~~~l~~~-~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~  254 (283)
                      |.-+.+..  .+..+++.. .+  .+|||+|||+|.++..|+++...  .+.++|+++.+++.|+++    +..  ..+.
T Consensus        31 ~~~~~d~~--ll~~~~~~~~~~--~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~  104 (259)
T 3lpm_A           31 FSFSIDAV--LLAKFSYLPIRK--GKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEII  104 (259)
T ss_dssp             BCCCHHHH--HHHHHCCCCSSC--CEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred             ccCcHHHH--HHHHHhcCCCCC--CEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEE
Confidence            33345544  566666654 44  68999999999999999987432  678899999998888654    443  5666


Q ss_pred             eccccCCC--CCCCceeeeeecc
Q 038698          255 VLGTIHLP--YPSRAFDMAQCSR  275 (283)
Q Consensus       255 v~da~rLP--Fpd~SFDlV~cs~  275 (283)
                      .+|+..++  +++++||+|+|+-
T Consensus       105 ~~D~~~~~~~~~~~~fD~Ii~np  127 (259)
T 3lpm_A          105 EYDLKKITDLIPKERADIVTCNP  127 (259)
T ss_dssp             CSCGGGGGGTSCTTCEEEEEECC
T ss_pred             ECcHHHhhhhhccCCccEEEECC
Confidence            67877776  6789999999963

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.77  E-value=3.4e-08  Score=89.15  Aligned_cols=100  Identities=13%  Similarity=0.077  Sum_probs=73.0

Q ss_pred             cCCeeeeCCCCCCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-
Q 038698          169 QGNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-  247 (283)
Q Consensus       169 ~~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-  247 (283)
                      .|-+|.+.-..+.|...-......+.+++..  |  .+|||+|||+|.++..|++++..  .+.++|+++.+++.|++. 
T Consensus        95 ~g~~f~~d~~~~~f~~~~~~~~~~l~~~~~~--~--~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~  168 (278)
T 2frn_A           95 NGIKYKLDVAKIMFSPANVKERVRMAKVAKP--D--ELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENI  168 (278)
T ss_dssp             TTEEEEEETTTSCCCGGGHHHHHHHHHHCCT--T--CEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHH
T ss_pred             CCEEEEEEccceeEcCCcHHHHHHHHHhCCC--C--CEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHH
Confidence            3445556545566766554556667776542  3  58999999999999999987543  467889999998887653 


Q ss_pred             ---CCC--eEEEeccccCCCCCCCceeeeeecc
Q 038698          248 ---GVP--AVIGVLGTIHLPYPSRAFDMAQCSR  275 (283)
Q Consensus       248 ---g~~--a~~~v~da~rLPFpd~SFDlV~cs~  275 (283)
                         ++.  ..+..+|+..+++ +++||+|++..
T Consensus       169 ~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~  200 (278)
T 2frn_A          169 HLNKVEDRMSAYNMDNRDFPG-ENIADRILMGY  200 (278)
T ss_dssp             HHTTCTTTEEEECSCTTTCCC-CSCEEEEEECC
T ss_pred             HHcCCCceEEEEECCHHHhcc-cCCccEEEECC
Confidence               553  4577778888887 88999999853

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.76  E-value=7.8e-09  Score=93.51  Aligned_cols=43  Identities=19%  Similarity=0.166  Sum_probs=35.3

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER  247 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er  247 (283)
                      ..+|||||||+|.++..|+++-. ...+.++|+++.+++.|+++
T Consensus        47 ~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~   89 (292)
T 3g07_A           47 GRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQN   89 (292)
T ss_dssp             TSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHT
T ss_pred             CCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHH
Confidence            36899999999999999988621 23577899999999998765

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.76  E-value=8.8e-09  Score=89.39  Aligned_cols=73  Identities=12%  Similarity=0.065  Sum_probs=56.6

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC--CC-------------------------------
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG--VP-------------------------------  250 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg--~~-------------------------------  250 (283)
                      ..+|||||||+|.++..|++++.  ..+.++|+++.+++.|.++-  .+                               
T Consensus        57 ~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           57 GELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             EEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             CCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            37899999999999988887754  36788999999998887651  11                               


Q ss_pred             -e-EEEeccccCC-CCCC---Cceeeeeeccccc
Q 038698          251 -A-VIGVLGTIHL-PYPS---RAFDMAQCSRCLI  278 (283)
Q Consensus       251 -a-~~~v~da~rL-PFpd---~SFDlV~cs~~Li  278 (283)
                       + .+..++...+ |+++   ++||+|+|..+|.
T Consensus       135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~  168 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLD  168 (265)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHH
T ss_pred             hheeEEEeeeccCCCCCccccCCccEEEEhhhhh
Confidence             3 5666777665 4477   9999999998874

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.75  E-value=1.2e-08  Score=93.73  Aligned_cols=71  Identities=10%  Similarity=0.009  Sum_probs=51.2

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-------eEEEeccc------cCC--CCCC
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-------AVIGVLGT------IHL--PYPS  265 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-------a~~~v~da------~rL--PFpd  265 (283)
                      .+|||||||+|..+..++..+.  ..+.|+|+++.+++.|+++    +..       ..+.+.+.      +.|  ++++
T Consensus        50 ~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           50 RKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             CEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            6899999999976665555432  2567899999999998865    221       22434444      434  5889


Q ss_pred             Cceeeeeecccc
Q 038698          266 RAFDMAQCSRCL  277 (283)
Q Consensus       266 ~SFDlV~cs~~L  277 (283)
                      ++||+|.|..++
T Consensus       128 ~~FD~V~~~~~l  139 (302)
T 2vdw_A          128 GKFNIIDWQFAI  139 (302)
T ss_dssp             SCEEEEEEESCG
T ss_pred             CCeeEEEECchH
Confidence            999999999877

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.74  E-value=9.1e-09  Score=88.09  Aligned_cols=102  Identities=13%  Similarity=0.061  Sum_probs=64.8

Q ss_pred             CCeeeeCCCCCCCCCchhHHHHHHHhhCCCC-CCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-
Q 038698          170 GNVFKFPGGGTMFPQGADAYIDELASVIPIK-DGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-  247 (283)
Q Consensus       170 ~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~~-~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-  247 (283)
                      |-++..|.|. .+.-..+.+.+.|.+.+... .+  .+|||+|||+|.++..+++++.  ..+.++|+++.+++.|+++ 
T Consensus        22 g~~l~~~~~~-~~rp~~~~~~~~l~~~l~~~~~~--~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~   96 (201)
T 2ift_A           22 GRKLPVLNSE-GLRPTGDRVKETLFNWLMPYIHQ--SECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNL   96 (201)
T ss_dssp             TCEEECC----------CHHHHHHHHHHHHHHTT--CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHH
T ss_pred             CcEecCCCCC-CcCcCHHHHHHHHHHHHHHhcCC--CeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHH
Confidence            3455666542 22223455556666655431 23  5899999999999998777653  2567889999999888653 


Q ss_pred             ---CC---CeEEEeccccCC-CC-CCCc-eeeeeeccc
Q 038698          248 ---GV---PAVIGVLGTIHL-PY-PSRA-FDMAQCSRC  276 (283)
Q Consensus       248 ---g~---~a~~~v~da~rL-PF-pd~S-FDlV~cs~~  276 (283)
                         ++   .+.+..+|+..+ +. ++++ ||+|++...
T Consensus        97 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  134 (201)
T 2ift_A           97 QTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPP  134 (201)
T ss_dssp             HHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCC
T ss_pred             HHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECCC
Confidence               44   455666676554 32 4789 999998765

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.74  E-value=9.3e-09  Score=90.73  Aligned_cols=71  Identities=15%  Similarity=0.141  Sum_probs=57.8

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCCCC-CCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHLPY-PSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rLPF-pd~SFDlV~cs~~L  277 (283)
                      .+|||||||+|.++..|++.+.  ..+.++|+++.+++.|.++    +.  ...+..++...+|+ ++++||+|+|..++
T Consensus        66 ~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l  143 (298)
T 1ri5_A           66 DSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF  143 (298)
T ss_dssp             CEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred             CeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchh
Confidence            6899999999999988887643  2567889999999888765    22  24566778999999 79999999999887

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.74  E-value=1.4e-08  Score=94.48  Aligned_cols=84  Identities=17%  Similarity=0.191  Sum_probs=63.1

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIH  260 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~r  260 (283)
                      ..|.+.|.+.+....+  .+|||||||+|.++..|++++.  ..+.++|+++ +++.|+++    +.  ...+..+++..
T Consensus        50 ~~~~~~i~~~~~~~~~--~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~  124 (340)
T 2fyt_A           50 ESYRDFIYQNPHIFKD--KVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEE  124 (340)
T ss_dssp             HHHHHHHHHCGGGTTT--CEEEEETCTTSHHHHHHHHTTC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             HHHHHHHHhhhhhcCC--CEEEEeeccCcHHHHHHHHcCC--CEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHH
Confidence            4567778777665444  6899999999999999988743  2456677775 66666543    43  35667778999


Q ss_pred             CCCCCCceeeeeecc
Q 038698          261 LPYPSRAFDMAQCSR  275 (283)
Q Consensus       261 LPFpd~SFDlV~cs~  275 (283)
                      +++++++||+|+|..
T Consensus       125 ~~~~~~~~D~Ivs~~  139 (340)
T 2fyt_A          125 VHLPVEKVDVIISEW  139 (340)
T ss_dssp             SCCSCSCEEEEEECC
T ss_pred             hcCCCCcEEEEEEcC
Confidence            999999999999976

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.74  E-value=1.7e-08  Score=84.49  Aligned_cols=75  Identities=13%  Similarity=0.127  Sum_probs=57.5

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCCC-CCCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHLP-YPSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rLP-Fpd~SFDlV~cs~~L  277 (283)
                      .+|||+|||+|.++..|+++--....+.++|+++.+++.|+++    ++  ...+..+++..++ +.+++||+|++...+
T Consensus        24 ~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~~  103 (197)
T 3eey_A           24 DTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGY  103 (197)
T ss_dssp             CEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEESB
T ss_pred             CEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCCc
Confidence            5899999999999999888611112567889999998888654    43  3556777888887 888999999998765


Q ss_pred             cc
Q 038698          278 IP  279 (283)
Q Consensus       278 i~  279 (283)
                      .+
T Consensus       104 ~~  105 (197)
T 3eey_A          104 LP  105 (197)
T ss_dssp             CT
T ss_pred             cc
Confidence            43

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.73  E-value=9.1e-09  Score=91.94  Aligned_cols=86  Identities=17%  Similarity=0.073  Sum_probs=55.3

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC--------------------
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV--------------------  249 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~--------------------  249 (283)
                      ++.|.+.+........+|||||||+|.+...++...  ...+.++|+++.+++.|+++-.                    
T Consensus        58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~  135 (289)
T 2g72_A           58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEG  135 (289)
T ss_dssp             HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccC--CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcC
Confidence            455666654321123689999999999554333321  2256788999999988765310                    


Q ss_pred             ---------------CeEEEeccccC-CCCC-----CCceeeeeecccc
Q 038698          250 ---------------PAVIGVLGTIH-LPYP-----SRAFDMAQCSRCL  277 (283)
Q Consensus       250 ---------------~a~~~v~da~r-LPFp-----d~SFDlV~cs~~L  277 (283)
                                     ...+..+|+.. +||+     +++||+|+|+.+|
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l  184 (289)
T 2g72_A          136 KGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCL  184 (289)
T ss_dssp             SCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCH
T ss_pred             cccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhh
Confidence                           01233447666 7754     5679999999987

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.73  E-value=1.7e-08  Score=92.47  Aligned_cols=89  Identities=9%  Similarity=0.023  Sum_probs=67.1

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCC
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLP  262 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLP  262 (283)
                      ...+.+.+.+....+  .+|||||||+|.++..|+++......+.++|+++++++.|+++    |.. ..+..++...++
T Consensus        62 ~~~~~l~~~l~~~~~--~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~  139 (317)
T 1dl5_A           62 SLMALFMEWVGLDKG--MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV  139 (317)
T ss_dssp             HHHHHHHHHTTCCTT--CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred             HHHHHHHHhcCCCCc--CEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcc
Confidence            456677777776555  6899999999999999988633212367789999998888754    543 556667877766


Q ss_pred             CCCCceeeeeeccccc
Q 038698          263 YPSRAFDMAQCSRCLI  278 (283)
Q Consensus       263 Fpd~SFDlV~cs~~Li  278 (283)
                      .++++||+|++..++-
T Consensus       140 ~~~~~fD~Iv~~~~~~  155 (317)
T 1dl5_A          140 PEFSPYDVIFVTVGVD  155 (317)
T ss_dssp             GGGCCEEEEEECSBBS
T ss_pred             ccCCCeEEEEEcCCHH
Confidence            6789999999998773

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.73  E-value=1e-08  Score=95.62  Aligned_cols=85  Identities=12%  Similarity=0.115  Sum_probs=61.6

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC--eEEEeccccC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP--AVIGVLGTIH  260 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~--a~~~v~da~r  260 (283)
                      ..|.+.|.+......+  .+|||||||+|.++..|++++.  ..+.++|+++ +++.|++    .+..  +.+..++++.
T Consensus        52 ~~~~~~i~~~~~~~~~--~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~  126 (349)
T 3q7e_A           52 LTYRNSMFHNRHLFKD--KVVLDVGSGTGILCMFAAKAGA--RKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEE  126 (349)
T ss_dssp             HHHHHHHHTCHHHHTT--CEEEEESCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             HHHHHHHHhccccCCC--CEEEEEeccchHHHHHHHHCCC--CEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHH
Confidence            4466666654333233  6899999999999999998743  2456677773 6666654    3554  5677789999


Q ss_pred             CCCCCCceeeeeeccc
Q 038698          261 LPYPSRAFDMAQCSRC  276 (283)
Q Consensus       261 LPFpd~SFDlV~cs~~  276 (283)
                      +|+++++||+|+|..+
T Consensus       127 ~~~~~~~fD~Iis~~~  142 (349)
T 3q7e_A          127 VELPVEKVDIIISEWM  142 (349)
T ss_dssp             CCCSSSCEEEEEECCC
T ss_pred             ccCCCCceEEEEEccc
Confidence            9999999999999653

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.72  E-value=6.7e-09  Score=85.65  Aligned_cols=86  Identities=10%  Similarity=0.080  Sum_probs=60.7

Q ss_pred             hHHHHHHHhhCC-CCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEecccc
Q 038698          187 DAYIDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTI  259 (283)
Q Consensus       187 ~~Yid~I~~~l~-~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~  259 (283)
                      +...+.+.+.+. ...+  .+|||+|||+|.++..|++++.  ..+.++|+++.+++.|+++    ++.  ..+..+++.
T Consensus        16 ~~~~~~~~~~l~~~~~~--~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   91 (177)
T 2esr_A           16 DKVRGAIFNMIGPYFNG--GRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAE   91 (177)
T ss_dssp             --CHHHHHHHHCSCCCS--CEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHH
T ss_pred             HHHHHHHHHHHHhhcCC--CeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHH
Confidence            334556666665 3333  6899999999999999988742  3567889999999888754    332  456566665


Q ss_pred             C-CCCCCCceeeeeeccc
Q 038698          260 H-LPYPSRAFDMAQCSRC  276 (283)
Q Consensus       260 r-LPFpd~SFDlV~cs~~  276 (283)
                      . +|..+++||+|++...
T Consensus        92 ~~~~~~~~~fD~i~~~~~  109 (177)
T 2esr_A           92 RAIDCLTGRFDLVFLDPP  109 (177)
T ss_dssp             HHHHHBCSCEEEEEECCS
T ss_pred             HhHHhhcCCCCEEEECCC
Confidence            5 5666778999999744

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.71  E-value=1.7e-08  Score=87.41  Aligned_cols=70  Identities=16%  Similarity=0.080  Sum_probs=57.1

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCCCCCCCceeeeeeccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHLPYPSRAFDMAQCSRCLI  278 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rLPFpd~SFDlV~cs~~Li  278 (283)
                      .+|||+|||+|.++..|++++   ..+.++|+++.+++.|+++    ++  ...+..+|+..++ ++++||+|++...+.
T Consensus        80 ~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~  155 (241)
T 3gdh_A           80 DVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWG  155 (241)
T ss_dssp             SEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCS
T ss_pred             CEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcC
Confidence            589999999999999999985   3567889999998887643    54  4567777887877 788999999987663

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.70  E-value=6.2e-09  Score=84.37  Aligned_cols=100  Identities=17%  Similarity=0.138  Sum_probs=67.0

Q ss_pred             CCeeeeCCCCCCCCCchhHHHHHHHhhCCCC--CCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc
Q 038698          170 GNVFKFPGGGTMFPQGADAYIDELASVIPIK--DGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER  247 (283)
Q Consensus       170 ~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~~--~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er  247 (283)
                      |.++..+.+   +....+...+.+.+.+...  .+  .+|||+|||+|.++..|++++..   +.++|+++.+++.|+++
T Consensus        11 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~   82 (171)
T 1ws6_A           11 GVALKVPAS---ARPSPVRLRKALFDYLRLRYPRR--GRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKEN   82 (171)
T ss_dssp             TCEECCCTT---CCCCCHHHHHHHHHHHHHHCTTC--CEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHH
T ss_pred             CeEecCCCC---CCCCHHHHHHHHHHHHHhhccCC--CeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHH
Confidence            344445554   3334456666666666421  23  58999999999999999988643   67889999998888653


Q ss_pred             ----CCCeEEEeccccC-CCC---CCCceeeeeecccc
Q 038698          248 ----GVPAVIGVLGTIH-LPY---PSRAFDMAQCSRCL  277 (283)
Q Consensus       248 ----g~~a~~~v~da~r-LPF---pd~SFDlV~cs~~L  277 (283)
                          +....+...++.. ++.   .+++||+|++...+
T Consensus        83 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~  120 (171)
T 1ws6_A           83 VRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY  120 (171)
T ss_dssp             HHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT
T ss_pred             HHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCC
Confidence                4445566666554 332   23489999998654

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.70  E-value=3e-08  Score=92.06  Aligned_cols=106  Identities=11%  Similarity=0.124  Sum_probs=64.6

Q ss_pred             CCeeeeCCCCCCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC
Q 038698          170 GNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV  249 (283)
Q Consensus       170 ~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~  249 (283)
                      ++.+..-|....|-......++.+.+.+.+.. ...+|||||||||.|+..|++++.  ..+.++|+++.|++.++++..
T Consensus        53 ~d~I~v~g~~~~yvsrg~~Kl~~~l~~~~~~~-~g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~~  129 (291)
T 3hp7_A           53 GTELKLKGEKLRYVSRGGLKLEKALAVFNLSV-EDMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQDD  129 (291)
T ss_dssp             TCCEEETTCCCCSSSTTHHHHHHHHHHTTCCC-TTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTCT
T ss_pred             CCEEEEcccccccccchHHHHHHHHHhcCCCc-cccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCc
Confidence            44455543322333333444566666665432 226999999999999999988753  235677888887777665443


Q ss_pred             CeEE-EeccccCCC---CCCCceeeeeeccccc
Q 038698          250 PAVI-GVLGTIHLP---YPSRAFDMAQCSRCLI  278 (283)
Q Consensus       250 ~a~~-~v~da~rLP---Fpd~SFDlV~cs~~Li  278 (283)
                      .+.. ...+++.++   +++.+||+|+|..+++
T Consensus       130 rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~  162 (291)
T 3hp7_A          130 RVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFI  162 (291)
T ss_dssp             TEEEECSCCGGGCCGGGCTTCCCSEEEECCSSS
T ss_pred             ccceecccCceecchhhCCCCCCCEEEEEeeHh
Confidence            3322 222333443   3556799999987765

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.69  E-value=4.9e-08  Score=89.34  Aligned_cols=100  Identities=11%  Similarity=0.043  Sum_probs=67.9

Q ss_pred             CCCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCccH----HHHHHhhc-CCe--eEeeccccChHHHHHHHHHcC---
Q 038698          179 GTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVAS----WGAYLLKR-NVL--TMSFAPRDNHEAQVQFALERG---  248 (283)
Q Consensus       179 gt~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGs----faa~L~~r-~v~--~~sla~~D~s~a~vq~A~erg---  248 (283)
                      -|.|.+...++-..-..++|..  ...+|||+|||||.    ++..|++. +..  ...+.+.|+++++++.|++.-   
T Consensus        83 ~t~FfRd~~~f~~l~~~llp~~--~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~  160 (274)
T 1af7_A           83 LTAFFREAHHFPILAEHARRRH--GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRL  160 (274)
T ss_dssp             CCCTTTTTTHHHHHHHHHHHSC--SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEG
T ss_pred             CccccCChHHHHHHHHHccCCC--CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCch
Confidence            5677766655532222345542  23689999999996    66666654 210  236789999999999997631   


Q ss_pred             ---------------------------------CCeEEEeccccCCCCC-CCceeeeeeccccccc
Q 038698          249 ---------------------------------VPAVIGVLGTIHLPYP-SRAFDMAQCSRCLIPW  280 (283)
Q Consensus       249 ---------------------------------~~a~~~v~da~rLPFp-d~SFDlV~cs~~Li~W  280 (283)
                                                       ..+.+...+...+||+ ++.||+|+|..+|+..
T Consensus       161 ~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf  226 (274)
T 1af7_A          161 SELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF  226 (274)
T ss_dssp             GGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS
T ss_pred             hhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhC
Confidence                                             0244566677777787 7899999999988654

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.69  E-value=4.5e-08  Score=82.53  Aligned_cols=71  Identities=13%  Similarity=0.017  Sum_probs=55.2

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeeccccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~W  280 (283)
                      .+|||+|||+|.++..|++++.  ..+.++|+++.+++.|+++-....+..+++..+|   ++||+|+++..+..|
T Consensus        53 ~~vlD~gcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~  123 (200)
T 1ne2_A           53 RSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSV  123 (200)
T ss_dssp             SEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC---
T ss_pred             CEEEEEeCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhc
Confidence            6899999999999999988742  2467889999999999876434566667877776   799999998776443

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.69  E-value=2.1e-08  Score=85.75  Aligned_cols=75  Identities=17%  Similarity=0.326  Sum_probs=58.4

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCC--CCCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLP--YPSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLP--Fpd~SFDlV~cs~~L  277 (283)
                      .+|||||||+|.++..|+++.. ...+.++|+++.+++.|.++    ++ +..+..+++..+|  |++++||+|++.-. 
T Consensus        43 ~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~-  120 (214)
T 1yzh_A           43 PIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS-  120 (214)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC-
T ss_pred             CeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC-
Confidence            5899999999999999988632 23567889999998887653    54 4556677888888  89999999999854 


Q ss_pred             cccc
Q 038698          278 IPWT  281 (283)
Q Consensus       278 i~W~  281 (283)
                      .+|.
T Consensus       121 ~~~~  124 (214)
T 1yzh_A          121 DPWP  124 (214)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            3663

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.66  E-value=4.2e-08  Score=92.42  Aligned_cols=82  Identities=17%  Similarity=0.087  Sum_probs=62.7

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHLPY  263 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rLPF  263 (283)
                      ...|..+. ...+  .+|||+|||+|+++..++..... ..+.+.|+++.+++.|+++    |+  ...+..+|+..+|+
T Consensus       207 a~~l~~~~-~~~~--~~vLD~gCGsG~~~i~~a~~~~~-~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~  282 (373)
T 3tm4_A          207 ANAMIELA-ELDG--GSVLDPMCGSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQ  282 (373)
T ss_dssp             HHHHHHHH-TCCS--CCEEETTCTTCHHHHHHHHTTCC-SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGG
T ss_pred             HHHHHHhh-cCCC--CEEEEccCcCcHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCc
Confidence            44455555 3333  68999999999999999887431 1467889999998888653    55  45677889999999


Q ss_pred             CCCceeeeeecc
Q 038698          264 PSRAFDMAQCSR  275 (283)
Q Consensus       264 pd~SFDlV~cs~  275 (283)
                      ++++||+|+|+-
T Consensus       283 ~~~~fD~Ii~np  294 (373)
T 3tm4_A          283 YVDSVDFAISNL  294 (373)
T ss_dssp             TCSCEEEEEEEC
T ss_pred             ccCCcCEEEECC
Confidence            999999999963

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.66  E-value=1.1e-08  Score=90.76  Aligned_cols=90  Identities=10%  Similarity=-0.024  Sum_probs=58.5

Q ss_pred             hhHHH-HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc--CCC------------
Q 038698          186 ADAYI-DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER--GVP------------  250 (283)
Q Consensus       186 a~~Yi-d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er--g~~------------  250 (283)
                      +..|+ +.+.+++........+|||||||+|.+...++..+.  -.+.++|+++.+++.|+++  ..+            
T Consensus        37 ~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~  114 (263)
T 2a14_A           37 MLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFA  114 (263)
T ss_dssp             HHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHH
Confidence            34443 345455522111236899999999988777766653  2577889999998887653  100            


Q ss_pred             --------------------e-EEEeccccC-CCCC---CCceeeeeecccc
Q 038698          251 --------------------A-VIGVLGTIH-LPYP---SRAFDMAQCSRCL  277 (283)
Q Consensus       251 --------------------a-~~~v~da~r-LPFp---d~SFDlV~cs~~L  277 (283)
                                          + .+.++|+.. .|++   +++||+|+|+.||
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l  166 (263)
T 2a14_A          115 CELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAM  166 (263)
T ss_dssp             HHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCH
T ss_pred             HhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHH
Confidence                                1 144556555 4654   7899999999887

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.66  E-value=4.6e-08  Score=84.89  Aligned_cols=81  Identities=11%  Similarity=0.138  Sum_probs=61.8

Q ss_pred             HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc-----CC-CeEEEeccccCCCC
Q 038698          191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER-----GV-PAVIGVLGTIHLPY  263 (283)
Q Consensus       191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er-----g~-~a~~~v~da~rLPF  263 (283)
                      ..+.+.+....+  .+|||+|||+|.++..|++. +. ...+.++|+++.+++.|+++     |. ...+...+...+|+
T Consensus        86 ~~~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~  162 (258)
T 2pwy_A           86 SAMVTLLDLAPG--MRVLEAGTGSGGLTLFLARAVGE-KGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAEL  162 (258)
T ss_dssp             HHHHHHTTCCTT--CEEEEECCTTSHHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCC
T ss_pred             HHHHHHcCCCCC--CEEEEECCCcCHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCC
Confidence            456666666544  68999999999999999886 21 12467789999988888765     53 35566778888899


Q ss_pred             CCCceeeeeec
Q 038698          264 PSRAFDMAQCS  274 (283)
Q Consensus       264 pd~SFDlV~cs  274 (283)
                      ++++||+|++.
T Consensus       163 ~~~~~D~v~~~  173 (258)
T 2pwy_A          163 EEAAYDGVALD  173 (258)
T ss_dssp             CTTCEEEEEEE
T ss_pred             CCCCcCEEEEC
Confidence            99999999984

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.66  E-value=4.2e-08  Score=86.70  Aligned_cols=83  Identities=16%  Similarity=0.122  Sum_probs=62.0

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-----C--C-CeEEEeccccCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-----G--V-PAVIGVLGTIHL  261 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-----g--~-~a~~~v~da~rL  261 (283)
                      +..|.+.+....+  .+|||+|||+|.++..|+++-.....+.++|+++.+++.|+++     |  . ...+...++..+
T Consensus        88 ~~~i~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~  165 (280)
T 1i9g_A           88 AAQIVHEGDIFPG--ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS  165 (280)
T ss_dssp             HHHHHHHTTCCTT--CEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred             HHHHHHHcCCCCC--CEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc
Confidence            4456666666544  5899999999999999988511112467789999988887654     3  2 355667788889


Q ss_pred             CCCCCceeeeeec
Q 038698          262 PYPSRAFDMAQCS  274 (283)
Q Consensus       262 PFpd~SFDlV~cs  274 (283)
                      ++++++||+|++.
T Consensus       166 ~~~~~~~D~v~~~  178 (280)
T 1i9g_A          166 ELPDGSVDRAVLD  178 (280)
T ss_dssp             CCCTTCEEEEEEE
T ss_pred             CCCCCceeEEEEC
Confidence            9999999999985

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.65  E-value=5.6e-08  Score=83.62  Aligned_cols=81  Identities=7%  Similarity=-0.101  Sum_probs=59.1

Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCCCCCC
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLPYPS  265 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLPFpd  265 (283)
                      .+.+.+....+  .+|||+|||+|.++..|++++   ..+.++|+++++++.|+++    +++  ..+..+++.......
T Consensus        46 ~~l~~l~~~~~--~~vLDlGcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~  120 (204)
T 3njr_A           46 LTLAALAPRRG--ELLWDIGGGSGSVSVEWCLAG---GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL  120 (204)
T ss_dssp             HHHHHHCCCTT--CEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTS
T ss_pred             HHHHhcCCCCC--CEEEEecCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccC
Confidence            45555555444  689999999999999999873   3567889999998887654    554  556667776633344


Q ss_pred             Cceeeeeecccc
Q 038698          266 RAFDMAQCSRCL  277 (283)
Q Consensus       266 ~SFDlV~cs~~L  277 (283)
                      ..||+|++...+
T Consensus       121 ~~~D~v~~~~~~  132 (204)
T 3njr_A          121 PLPEAVFIGGGG  132 (204)
T ss_dssp             CCCSEEEECSCC
T ss_pred             CCCCEEEECCcc
Confidence            689999987643

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.65  E-value=2.1e-08  Score=92.86  Aligned_cols=85  Identities=9%  Similarity=0.039  Sum_probs=66.0

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc---CCCeEEEeccccCCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER---GVPAVIGVLGTIHLPY  263 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er---g~~a~~~v~da~rLPF  263 (283)
                      ...++.|.+.+....+  .+|||||||+|.++..|++++.   .+.++|+++.+++.+.++   ..+..+..+|+..+++
T Consensus        36 ~~i~~~Iv~~l~~~~~--~~VLEIG~G~G~lT~~La~~~~---~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~  110 (295)
T 3gru_A           36 KNFVNKAVESANLTKD--DVVLEIGLGKGILTEELAKNAK---KVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDL  110 (295)
T ss_dssp             HHHHHHHHHHTTCCTT--CEEEEECCTTSHHHHHHHHHSS---EEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCG
T ss_pred             HHHHHHHHHhcCCCCc--CEEEEECCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCc
Confidence            3467788888877554  6899999999999999998742   455677777777777654   2345677789999999


Q ss_pred             CCCceeeeeeccc
Q 038698          264 PSRAFDMAQCSRC  276 (283)
Q Consensus       264 pd~SFDlV~cs~~  276 (283)
                      ++.+||+|+++.-
T Consensus       111 ~~~~fD~Iv~NlP  123 (295)
T 3gru_A          111 NKLDFNKVVANLP  123 (295)
T ss_dssp             GGSCCSEEEEECC
T ss_pred             ccCCccEEEEeCc
Confidence            9999999998743

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.65  E-value=5.8e-08  Score=91.58  Aligned_cols=83  Identities=14%  Similarity=0.158  Sum_probs=62.0

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIH  260 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~r  260 (283)
                      ..|.+.|.+.+....+  .+|||||||+|.++..|++++..  .+.++|++ .+++.|+++    +..  +.+..++++.
T Consensus        49 ~~~~~~i~~~~~~~~~--~~VLDlGcGtG~ls~~la~~g~~--~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~  123 (376)
T 3r0q_C           49 DAYFNAVFQNKHHFEG--KTVLDVGTGSGILAIWSAQAGAR--KVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVED  123 (376)
T ss_dssp             HHHHHHHHTTTTTTTT--CEEEEESCTTTHHHHHHHHTTCS--EEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGG
T ss_pred             HHHHHHHHhccccCCC--CEEEEeccCcCHHHHHHHhcCCC--EEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhh
Confidence            5567777776665444  68999999999999999987541  45667777 666666543    443  5677788999


Q ss_pred             CCCCCCceeeeeecc
Q 038698          261 LPYPSRAFDMAQCSR  275 (283)
Q Consensus       261 LPFpd~SFDlV~cs~  275 (283)
                      ++++ ++||+|+|..
T Consensus       124 ~~~~-~~~D~Iv~~~  137 (376)
T 3r0q_C          124 ISLP-EKVDVIISEW  137 (376)
T ss_dssp             CCCS-SCEEEEEECC
T ss_pred             cCcC-CcceEEEEcC
Confidence            9988 9999999954

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.64  E-value=5.8e-08  Score=84.95  Aligned_cols=73  Identities=14%  Similarity=0.200  Sum_probs=52.8

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCC---CCC---CCceeee
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHL---PYP---SRAFDMA  271 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rL---PFp---d~SFDlV  271 (283)
                      ..+|||+|||+|.++..|+++. ....+.++|+++.+++.|+++    ++.  +.+..+++..+   +++   +++||+|
T Consensus        66 ~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           66 LRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            3689999999999998888752 113567889999998888653    443  55666676552   566   3799999


Q ss_pred             eecccc
Q 038698          272 QCSRCL  277 (283)
Q Consensus       272 ~cs~~L  277 (283)
                      +|+-..
T Consensus       145 ~~npp~  150 (254)
T 2h00_A          145 MCNPPF  150 (254)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            998443

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.64  E-value=3.1e-08  Score=84.44  Aligned_cols=66  Identities=17%  Similarity=0.133  Sum_probs=49.9

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHH----HHH----cCC-CeEEEeccccCCCCCCCceeeee
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQF----ALE----RGV-PAVIGVLGTIHLPYPSRAFDMAQ  272 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~----A~e----rg~-~a~~~v~da~rLPFpd~SFDlV~  272 (283)
                      .+|||||||+|.++..|+++.. ...+.++|+++++++.    |++    .+. ...+.++++..+||++++ |.|+
T Consensus        29 ~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~  103 (218)
T 3mq2_A           29 DVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH  103 (218)
T ss_dssp             EEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE
T ss_pred             CEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE
Confidence            6899999999999999998731 2356777888876664    221    244 456777899999999988 8887

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.64  E-value=5.1e-08  Score=84.68  Aligned_cols=67  Identities=9%  Similarity=-0.040  Sum_probs=47.3

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHH----HHHHcCCCeEEEeccccC----CCCCCCceeeeeec
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQ----FALERGVPAVIGVLGTIH----LPYPSRAFDMAQCS  274 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq----~A~erg~~a~~~v~da~r----LPFpd~SFDlV~cs  274 (283)
                      .+|||+|||+|.++..|+++.. ...+.++|+++.+++    .|.++ .+..+..+++..    +|++ ++||+|+|.
T Consensus        59 ~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~  133 (210)
T 1nt2_A           59 ERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQD  133 (210)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEEC
T ss_pred             CEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEEe
Confidence            5899999999999998887632 225678899987543    34333 234444556655    4666 899999997

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.64  E-value=2.4e-08  Score=87.38  Aligned_cols=75  Identities=20%  Similarity=0.255  Sum_probs=56.8

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccC-CC--CCCCceeeeeeccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIH-LP--YPSRAFDMAQCSRC  276 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~r-LP--Fpd~SFDlV~cs~~  276 (283)
                      .+|||||||+|.++..|+++... ..+.++|+++.+++.|+++    ++ ++.+..+|+.. ||  |++++||+|++.-.
T Consensus        36 ~~vLDiGcG~G~~~~~lA~~~p~-~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~  114 (218)
T 3dxy_A           36 PVTLEIGFGMGASLVAMAKDRPE-QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFP  114 (218)
T ss_dssp             CEEEEESCTTCHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESC
T ss_pred             CeEEEEeeeChHHHHHHHHHCCC-CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeCC
Confidence            58999999999999999986432 2467889999998877643    55 35566677766 45  89999999998644


Q ss_pred             ccccc
Q 038698          277 LIPWT  281 (283)
Q Consensus       277 Li~W~  281 (283)
                      . +|.
T Consensus       115 ~-p~~  118 (218)
T 3dxy_A          115 D-PWH  118 (218)
T ss_dssp             C-CCC
T ss_pred             C-Ccc
Confidence            3 664

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.64  E-value=3.3e-08  Score=85.44  Aligned_cols=75  Identities=11%  Similarity=0.199  Sum_probs=57.8

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCC--CCCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLP--YPSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLP--Fpd~SFDlV~cs~~L  277 (283)
                      .+|||||||+|.++..|+++.. ...+.++|+++.+++.|.++    +.. +.+..+++..|+  |++++||.|++... 
T Consensus        40 ~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~-  117 (213)
T 2fca_A           40 PIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS-  117 (213)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC-
T ss_pred             ceEEEEecCCCHHHHHHHHHCC-CCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC-
Confidence            5899999999999999988632 23567889999999888653    553 556667888887  89999999987643 


Q ss_pred             cccc
Q 038698          278 IPWT  281 (283)
Q Consensus       278 i~W~  281 (283)
                      .+|.
T Consensus       118 ~p~~  121 (213)
T 2fca_A          118 DPWP  121 (213)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            3564

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.63  E-value=6e-08  Score=87.87  Aligned_cols=87  Identities=15%  Similarity=0.163  Sum_probs=64.8

Q ss_pred             HHHHHhhCCC--CCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCC
Q 038698          190 IDELASVIPI--KDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHL  261 (283)
Q Consensus       190 id~I~~~l~~--~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rL  261 (283)
                      ++.+.+.++.  ..  ..+|||||||+|.++..|+++.. ...+.+.|++ .+++.|.++    ++.  ..+...+...+
T Consensus       152 ~~~~~~~~~~~~~~--~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  227 (335)
T 2r3s_A          152 AQLIAQLVNENKIE--PLKVLDISASHGLFGIAVAQHNP-NAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV  227 (335)
T ss_dssp             HHHHHHHHTC--CC--CSEEEEETCTTCHHHHHHHHHCT-TCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS
T ss_pred             HHHHHHhcccccCC--CCEEEEECCCcCHHHHHHHHHCC-CCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC
Confidence            4455555554  33  36899999999999999988632 2356788999 888887654    442  55667788888


Q ss_pred             CCCCCceeeeeecccccccc
Q 038698          262 PYPSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       262 PFpd~SFDlV~cs~~Li~W~  281 (283)
                      |++++ ||+|+|+.++.+|.
T Consensus       228 ~~~~~-~D~v~~~~~l~~~~  246 (335)
T 2r3s_A          228 DYGND-YDLVLLPNFLHHFD  246 (335)
T ss_dssp             CCCSC-EEEEEEESCGGGSC
T ss_pred             CCCCC-CcEEEEcchhccCC
Confidence            88876 99999999998873

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.63  E-value=1.1e-07  Score=90.23  Aligned_cols=93  Identities=17%  Similarity=0.193  Sum_probs=66.7

Q ss_pred             CCCC-chhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC----Ce
Q 038698          181 MFPQ-GADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV----PA  251 (283)
Q Consensus       181 ~F~~-ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~----~a  251 (283)
                      .|.. +.+.-.+.+.+.++...+  .+|||+|||+|.++..|+++.. ...+.++|+++.+++.|+++    ++    .+
T Consensus       201 ~Fs~~~~d~~~~~ll~~l~~~~~--~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v  277 (375)
T 4dcm_A          201 VFSRTGLDIGARFFMQHLPENLE--GEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRC  277 (375)
T ss_dssp             CTTCSSCCHHHHHHHHTCCCSCC--SEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGE
T ss_pred             cccCCcccHHHHHHHHhCcccCC--CeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCceE
Confidence            4444 344445567777776444  6899999999999999998742 23567889999998887653    43    24


Q ss_pred             EEEeccccCCCCCCCceeeeeecccc
Q 038698          252 VIGVLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       252 ~~~v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                      .+...+... ++++++||+|+|+-.+
T Consensus       278 ~~~~~D~~~-~~~~~~fD~Ii~nppf  302 (375)
T 4dcm_A          278 EFMINNALS-GVEPFRFNAVLCNPPF  302 (375)
T ss_dssp             EEEECSTTT-TCCTTCEEEEEECCCC
T ss_pred             EEEechhhc-cCCCCCeeEEEECCCc
Confidence            455667655 7889999999997654

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.63  E-value=2.5e-08  Score=88.57  Aligned_cols=84  Identities=13%  Similarity=0.113  Sum_probs=54.1

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEE--------e-ccc
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIG--------V-LGT  258 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~--------v-~da  258 (283)
                      ..++.+.+.++... ...+|||||||+|.++..|++++..  .+.++|++++|++.|+++.......        . .+.
T Consensus        23 ~kL~~~L~~~~~~~-~g~~VLDiGcGtG~~t~~la~~g~~--~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~   99 (232)
T 3opn_A           23 LKLEKALKEFHLEI-NGKTCLDIGSSTGGFTDVMLQNGAK--LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADF   99 (232)
T ss_dssp             HHHHHHHHHTTCCC-TTCEEEEETCTTSHHHHHHHHTTCS--EEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGC
T ss_pred             HHHHHHHHHcCCCC-CCCEEEEEccCCCHHHHHHHhcCCC--EEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHc
Confidence            34555566665432 2268999999999999999988532  4667888888888777654332211        1 112


Q ss_pred             cCCCCCCCceeeeeec
Q 038698          259 IHLPYPSRAFDMAQCS  274 (283)
Q Consensus       259 ~rLPFpd~SFDlV~cs  274 (283)
                      ...+|.+.+||+++++
T Consensus       100 ~~~~~d~~~~D~v~~~  115 (232)
T 3opn_A          100 EQGRPSFTSIDVSFIS  115 (232)
T ss_dssp             CSCCCSEEEECCSSSC
T ss_pred             CcCCCCEEEEEEEhhh
Confidence            2223566789988876

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.63  E-value=6e-08  Score=83.09  Aligned_cols=85  Identities=13%  Similarity=0.065  Sum_probs=60.5

Q ss_pred             HHHHHhhCC--CCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc----CC------CeEEEec
Q 038698          190 IDELASVIP--IKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER----GV------PAVIGVL  256 (283)
Q Consensus       190 id~I~~~l~--~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er----g~------~a~~~v~  256 (283)
                      ...+.+.+.  ...+  .+|||||||+|.++..|+++ +.. ..+.++|+++.+++.|+++    +.      ...+..+
T Consensus        64 ~~~~l~~l~~~~~~~--~~vLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  140 (226)
T 1i1n_A           64 HAYALELLFDQLHEG--AKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG  140 (226)
T ss_dssp             HHHHHHHTTTTSCTT--CEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES
T ss_pred             HHHHHHHHHhhCCCC--CEEEEEcCCcCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEEC
Confidence            334555554  3333  68999999999999998875 221 2567788999888877643    21      4556667


Q ss_pred             cccCCCCCCCceeeeeecccc
Q 038698          257 GTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       257 da~rLPFpd~SFDlV~cs~~L  277 (283)
                      +....++++++||+|++...+
T Consensus       141 d~~~~~~~~~~fD~i~~~~~~  161 (226)
T 1i1n_A          141 DGRMGYAEEAPYDAIHVGAAA  161 (226)
T ss_dssp             CGGGCCGGGCCEEEEEECSBB
T ss_pred             CcccCcccCCCcCEEEECCch
Confidence            777777778899999998765

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.62  E-value=1e-07  Score=85.03  Aligned_cols=80  Identities=15%  Similarity=0.111  Sum_probs=60.9

Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC-------CC--eEEEeccccCC-
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG-------VP--AVIGVLGTIHL-  261 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg-------~~--a~~~v~da~rL-  261 (283)
                      .|...++...+  .+|||+|||+|.++..|+++.. ...+.++|+++.+++.|++.-       ..  ..+..+|...+ 
T Consensus        27 lL~~~~~~~~~--~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~  103 (260)
T 2ozv_A           27 LLASLVADDRA--CRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRA  103 (260)
T ss_dssp             HHHHTCCCCSC--EEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCH
T ss_pred             HHHHHhcccCC--CEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHh
Confidence            45566665433  6899999999999999988742 246788999999999887642       21  45666777776 


Q ss_pred             ------CCCCCceeeeeec
Q 038698          262 ------PYPSRAFDMAQCS  274 (283)
Q Consensus       262 ------PFpd~SFDlV~cs  274 (283)
                            +|++++||+|+|+
T Consensus       104 ~~~~~~~~~~~~fD~Vv~n  122 (260)
T 2ozv_A          104 KARVEAGLPDEHFHHVIMN  122 (260)
T ss_dssp             HHHHHTTCCTTCEEEEEEC
T ss_pred             hhhhhhccCCCCcCEEEEC
Confidence                  4789999999997

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.62  E-value=9.4e-08  Score=80.78  Aligned_cols=85  Identities=11%  Similarity=-0.100  Sum_probs=61.5

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYP  264 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFp  264 (283)
                      ...+.+.+....+  .+|||+|||+|.++..|+++.. ...+.++|+++++++.|+++    +.. ..+...+.......
T Consensus        29 ~~~~l~~l~~~~~--~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~  105 (204)
T 3e05_A           29 RAVTLSKLRLQDD--LVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDD  105 (204)
T ss_dssp             HHHHHHHTTCCTT--CEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTT
T ss_pred             HHHHHHHcCCCCC--CEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhc
Confidence            3456666766545  6899999999999999998742 23567889999998888654    443 45556676554444


Q ss_pred             CCceeeeeecccc
Q 038698          265 SRAFDMAQCSRCL  277 (283)
Q Consensus       265 d~SFDlV~cs~~L  277 (283)
                      .++||+|++...+
T Consensus       106 ~~~~D~i~~~~~~  118 (204)
T 3e05_A          106 LPDPDRVFIGGSG  118 (204)
T ss_dssp             SCCCSEEEESCCT
T ss_pred             CCCCCEEEECCCC
Confidence            5789999998764

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.62  E-value=4e-08  Score=85.83  Aligned_cols=70  Identities=10%  Similarity=0.049  Sum_probs=53.9

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCCCC---CCceeeeeecc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLPYP---SRAFDMAQCSR  275 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLPFp---d~SFDlV~cs~  275 (283)
                      .+|||||||+|.++..|+.... ...+.++|+++.++++|.+.    ++ .+.+..+++..++++   +++||+|+|..
T Consensus        72 ~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~  149 (240)
T 1xdz_A           72 NTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (240)
T ss_dssp             CEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CEEEEecCCCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence            6899999999999988885321 23567889999888877643    55 355666788888875   78999999965

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.62  E-value=5.4e-09  Score=87.36  Aligned_cols=85  Identities=12%  Similarity=0.094  Sum_probs=52.0

Q ss_pred             hHHHHHHHhhCCC-CCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCC
Q 038698          187 DAYIDELASVIPI-KDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHL  261 (283)
Q Consensus       187 ~~Yid~I~~~l~~-~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rL  261 (283)
                      ...++.+.+.+.. ..  ..+|||+|||+|.++..|+++.. ...+.++|+++.+++.|+++    +....+..+|+.. 
T Consensus        15 ~~~~~~~~~~l~~~~~--~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-   90 (215)
T 4dzr_A           15 EVLVEEAIRFLKRMPS--GTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-   90 (215)
T ss_dssp             HHHHHHHHHHHTTCCT--TEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC-------------------CCHHHHHH-
T ss_pred             HHHHHHHHHHhhhcCC--CCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-
Confidence            4556777777754 23  37999999999999999998732 23567889998888887654    2223344556655 


Q ss_pred             CCCC-----Cceeeeeecc
Q 038698          262 PYPS-----RAFDMAQCSR  275 (283)
Q Consensus       262 PFpd-----~SFDlV~cs~  275 (283)
                      ++++     ++||+|+|+-
T Consensus        91 ~~~~~~~~~~~fD~i~~np  109 (215)
T 4dzr_A           91 WLIERAERGRPWHAIVSNP  109 (215)
T ss_dssp             HHHHHHHTTCCBSEEEECC
T ss_pred             hhhhhhhccCcccEEEECC
Confidence            7777     9999999953

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.62  E-value=4.9e-08  Score=86.43  Aligned_cols=74  Identities=14%  Similarity=0.064  Sum_probs=54.9

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----------CC-CeEEEeccccC-CC--CCCCceee
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----------GV-PAVIGVLGTIH-LP--YPSRAFDM  270 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----------g~-~a~~~v~da~r-LP--Fpd~SFDl  270 (283)
                      .+|||||||+|.++..|+++.. ...+.++|+++.+++.|.++          +. ++.+..+++.. ||  |++++||+
T Consensus        48 ~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~  126 (235)
T 3ckk_A           48 VEFADIGCGYGGLLVELSPLFP-DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTK  126 (235)
T ss_dssp             EEEEEETCTTCHHHHHHGGGST-TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEE
T ss_pred             CeEEEEccCCcHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeE
Confidence            6899999999999999998632 23567889999998877532          33 35566778776 88  99999999


Q ss_pred             eeeccccccc
Q 038698          271 AQCSRCLIPW  280 (283)
Q Consensus       271 V~cs~~Li~W  280 (283)
                      |++.-. .+|
T Consensus       127 v~~~~~-dp~  135 (235)
T 3ckk_A          127 MFFLFP-DPH  135 (235)
T ss_dssp             EEEESC-C--
T ss_pred             EEEeCC-Cch
Confidence            987543 366

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.60  E-value=6.7e-08  Score=87.88  Aligned_cols=83  Identities=16%  Similarity=0.157  Sum_probs=64.5

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIH  260 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~r  260 (283)
                      ...++.|.+.++...+  .+|||||||+|.++..|++++.   .+.++|+++.+++.|.++    +.  ...+..+|+..
T Consensus        14 ~~i~~~i~~~~~~~~~--~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~   88 (285)
T 1zq9_A           14 PLIINSIIDKAALRPT--DVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK   88 (285)
T ss_dssp             HHHHHHHHHHTCCCTT--CEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred             HHHHHHHHHhcCCCCC--CEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceec
Confidence            3457788888876544  6899999999999999998753   467889999999888765    22  35566778888


Q ss_pred             CCCCCCceeeeeeccc
Q 038698          261 LPYPSRAFDMAQCSRC  276 (283)
Q Consensus       261 LPFpd~SFDlV~cs~~  276 (283)
                      ++++  +||+|+++..
T Consensus        89 ~~~~--~fD~vv~nlp  102 (285)
T 1zq9_A           89 TDLP--FFDTCVANLP  102 (285)
T ss_dssp             SCCC--CCSEEEEECC
T ss_pred             ccch--hhcEEEEecC
Confidence            8887  7999999743

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.60  E-value=8.7e-08  Score=92.09  Aligned_cols=98  Identities=16%  Similarity=0.192  Sum_probs=69.9

Q ss_pred             CCeeeeCCCCCCCCC----chhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH
Q 038698          170 GNVFKFPGGGTMFPQ----GADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL  245 (283)
Q Consensus       170 ~~~~~Fpgggt~F~~----ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~  245 (283)
                      |-.|.|+.+  .|.+    .+...++.+.+.+....+  .+|||+|||+|.++..|+++.   ..+.++|+++++++.|+
T Consensus       253 g~~~~~~~~--~f~q~n~~~~e~l~~~~~~~l~~~~~--~~VLDlgcG~G~~~~~la~~~---~~V~gvD~s~~al~~A~  325 (433)
T 1uwv_A          253 GLRLTFSPR--DFIQVNAGVNQKMVARALEWLDVQPE--DRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQ  325 (433)
T ss_dssp             TEEEECCSS--SCCCSBHHHHHHHHHHHHHHHTCCTT--CEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHH
T ss_pred             CEEEEECcc--cccccCHHHHHHHHHHHHHhhcCCCC--CEEEECCCCCCHHHHHHHhhC---CEEEEEeCCHHHHHHHH
Confidence            444555443  3444    245566777777765433  589999999999999999873   35678899999988876


Q ss_pred             Hc----CC-CeEEEeccccC----CCCCCCceeeeeec
Q 038698          246 ER----GV-PAVIGVLGTIH----LPYPSRAFDMAQCS  274 (283)
Q Consensus       246 er----g~-~a~~~v~da~r----LPFpd~SFDlV~cs  274 (283)
                      +.    ++ ++.+..+++..    +|+++++||+|++.
T Consensus       326 ~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d  363 (433)
T 1uwv_A          326 QNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD  363 (433)
T ss_dssp             HHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             HHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence            43    44 35566677665    67888999999975

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.60  E-value=6.9e-08  Score=86.19  Aligned_cols=72  Identities=19%  Similarity=0.096  Sum_probs=54.5

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCC---CCceeeeeecc
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYP---SRAFDMAQCSR  275 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFp---d~SFDlV~cs~  275 (283)
                      ..+|||||||+|.++..|+.... ...+.++|+++.++++|.+.    ++. +.+..++++.+++.   +++||+|+|..
T Consensus        81 ~~~vLDiG~G~G~~~i~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a  159 (249)
T 3g89_A           81 PLRVLDLGTGAGFPGLPLKIVRP-ELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARA  159 (249)
T ss_dssp             SCEEEEETCTTTTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEES
T ss_pred             CCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECC
Confidence            36899999999999988887521 23567889999998887643    653 55666788888764   58999999964


Q ss_pred             c
Q 038698          276 C  276 (283)
Q Consensus       276 ~  276 (283)
                      +
T Consensus       160 ~  160 (249)
T 3g89_A          160 V  160 (249)
T ss_dssp             S
T ss_pred             c
Confidence            3

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.60  E-value=7e-08  Score=78.93  Aligned_cols=83  Identities=13%  Similarity=0.071  Sum_probs=59.9

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCCC
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHLP  262 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rLP  262 (283)
                      ..+.+.+.+....+  .+|||+|||+|.++..|+++.   ..+.++|+++.+++.|.++    +.  ...+...+... +
T Consensus        21 ~~~~~~~~~~~~~~--~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~   94 (192)
T 1l3i_A           21 VRCLIMCLAEPGKN--DVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-A   94 (192)
T ss_dssp             HHHHHHHHHCCCTT--CEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-H
T ss_pred             HHHHHHHhcCCCCC--CEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-h
Confidence            34455666665444  699999999999999998875   3567889999988887653    44  34455556544 4


Q ss_pred             CCC-Cceeeeeecccc
Q 038698          263 YPS-RAFDMAQCSRCL  277 (283)
Q Consensus       263 Fpd-~SFDlV~cs~~L  277 (283)
                      +++ ++||+|++..++
T Consensus        95 ~~~~~~~D~v~~~~~~  110 (192)
T 1l3i_A           95 LCKIPDIDIAVVGGSG  110 (192)
T ss_dssp             HTTSCCEEEEEESCCT
T ss_pred             cccCCCCCEEEECCch
Confidence            444 689999998765

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.59  E-value=9.7e-08  Score=81.79  Aligned_cols=71  Identities=14%  Similarity=0.045  Sum_probs=54.4

Q ss_pred             cEEeecCCC-ccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEecccc-CCCCCCCceeeeeecccc
Q 038698          205 RTALDTGCG-VASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTI-HLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCG-tGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~-rLPFpd~SFDlV~cs~~L  277 (283)
                      .+|||+||| +|.++..|+++.  ...+.++|+++.+++.|+++    +....+..+++. -.++++++||+|+|+-..
T Consensus        57 ~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~  133 (230)
T 3evz_A           57 EVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPY  133 (230)
T ss_dssp             CEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCC
T ss_pred             CEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCC
Confidence            689999999 999999988872  23567889999998887643    555566666754 347788999999997443

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.59  E-value=6.7e-08  Score=89.30  Aligned_cols=84  Identities=15%  Similarity=0.189  Sum_probs=60.6

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIH  260 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~r  260 (283)
                      ..|.+.|.+.+....+  .+|||||||+|.++..+++++.  ..+.++|.+ .+++.|+++    +..  ..+..+++..
T Consensus        24 ~~y~~ai~~~~~~~~~--~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~   98 (328)
T 1g6q_1           24 LSYRNAIIQNKDLFKD--KIVLDVGCGTGILSMFAAKHGA--KHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLED   98 (328)
T ss_dssp             HHHHHHHHHHHHHHTT--CEEEEETCTTSHHHHHHHHTCC--SEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             HHHHHHHHhhHhhcCC--CEEEEecCccHHHHHHHHHCCC--CEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhh
Confidence            5577777666554334  5899999999999999988743  235566776 356655543    442  5566778899


Q ss_pred             CCCCCCceeeeeecc
Q 038698          261 LPYPSRAFDMAQCSR  275 (283)
Q Consensus       261 LPFpd~SFDlV~cs~  275 (283)
                      +++++++||+|+|..
T Consensus        99 ~~~~~~~~D~Ivs~~  113 (328)
T 1g6q_1           99 VHLPFPKVDIIISEW  113 (328)
T ss_dssp             SCCSSSCEEEEEECC
T ss_pred             ccCCCCcccEEEEeC
Confidence            999999999999974

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.58  E-value=7.2e-08  Score=81.80  Aligned_cols=88  Identities=14%  Similarity=0.096  Sum_probs=62.0

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCC
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLP  262 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLP  262 (283)
                      .....+.+.+....+  .+|||||||+|.++..|++.......+.++|+++.+++.|+++    +.. ..+...+.. .+
T Consensus        64 ~~~~~~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~  140 (215)
T 2yxe_A           64 HMVGMMCELLDLKPG--MKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGT-LG  140 (215)
T ss_dssp             HHHHHHHHHTTCCTT--CEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGG-GC
T ss_pred             HHHHHHHHhhCCCCC--CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcc-cC
Confidence            345566677765444  6899999999999999988631112567789999988888754    443 445555653 34


Q ss_pred             CC-CCceeeeeeccccc
Q 038698          263 YP-SRAFDMAQCSRCLI  278 (283)
Q Consensus       263 Fp-d~SFDlV~cs~~Li  278 (283)
                      ++ +++||+|++..++-
T Consensus       141 ~~~~~~fD~v~~~~~~~  157 (215)
T 2yxe_A          141 YEPLAPYDRIYTTAAGP  157 (215)
T ss_dssp             CGGGCCEEEEEESSBBS
T ss_pred             CCCCCCeeEEEECCchH
Confidence            44 78999999998874

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.58  E-value=6.5e-08  Score=82.90  Aligned_cols=73  Identities=15%  Similarity=0.111  Sum_probs=55.7

Q ss_pred             cEEeecCCCccHHHHHHhhcCC----eeEeeccccChHHHHHHHHHc----C-----C-CeEEEeccccCCC----CCCC
Q 038698          205 RTALDTGCGVASWGAYLLKRNV----LTMSFAPRDNHEAQVQFALER----G-----V-PAVIGVLGTIHLP----YPSR  266 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v----~~~sla~~D~s~a~vq~A~er----g-----~-~a~~~v~da~rLP----Fpd~  266 (283)
                      .+|||||||+|.++..|++...    ....+.++|+++.+++.|.++    +     . ...+..++....+    ++++
T Consensus        82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  161 (227)
T 2pbf_A           82 SRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELG  161 (227)
T ss_dssp             CEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHHC
T ss_pred             CEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccCC
Confidence            6899999999999999988632    122567789999888887654    3     2 4556667777766    7788


Q ss_pred             ceeeeeecccc
Q 038698          267 AFDMAQCSRCL  277 (283)
Q Consensus       267 SFDlV~cs~~L  277 (283)
                      +||+|++...+
T Consensus       162 ~fD~I~~~~~~  172 (227)
T 2pbf_A          162 LFDAIHVGASA  172 (227)
T ss_dssp             CEEEEEECSBB
T ss_pred             CcCEEEECCch
Confidence            99999998776

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.58  E-value=6.9e-08  Score=83.85  Aligned_cols=86  Identities=16%  Similarity=0.197  Sum_probs=62.2

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCC
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLP  262 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLP  262 (283)
                      .....+.+.+....+  .+|||||||+|.++..|++...  ..+.++|+++.+++.|+++    +. ...+...+. .++
T Consensus        78 ~~~~~~~~~l~~~~~--~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~  152 (235)
T 1jg1_A           78 HMVAIMLEIANLKPG--MNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKG  152 (235)
T ss_dssp             HHHHHHHHHHTCCTT--CCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGC
T ss_pred             HHHHHHHHhcCCCCC--CEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccC
Confidence            345566666665444  5899999999999999988632  3566788888888887654    44 344555565 567


Q ss_pred             CCCCc-eeeeeeccccc
Q 038698          263 YPSRA-FDMAQCSRCLI  278 (283)
Q Consensus       263 Fpd~S-FDlV~cs~~Li  278 (283)
                      +++++ ||+|++..++-
T Consensus       153 ~~~~~~fD~Ii~~~~~~  169 (235)
T 1jg1_A          153 FPPKAPYDVIIVTAGAP  169 (235)
T ss_dssp             CGGGCCEEEEEECSBBS
T ss_pred             CCCCCCccEEEECCcHH
Confidence            77765 99999988763

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.58  E-value=4.3e-08  Score=84.82  Aligned_cols=71  Identities=10%  Similarity=0.036  Sum_probs=56.8

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC--CeEEEeccccCCCCCC-----Cceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV--PAVIGVLGTIHLPYPS-----RAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~--~a~~~v~da~rLPFpd-----~SFDlV~cs~~L  277 (283)
                      .+|||||||+|.++..|+++..   .+.++|+++.+++.|+++..  ...+.+++...++++.     ..||+|+|..++
T Consensus        58 ~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~  134 (245)
T 3ggd_A           58 LPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGF  134 (245)
T ss_dssp             SCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSS
T ss_pred             CeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchh
Confidence            5899999999999999998754   56788999999999987632  4567777887776543     349999999887


Q ss_pred             c
Q 038698          278 I  278 (283)
Q Consensus       278 i  278 (283)
                      -
T Consensus       135 ~  135 (245)
T 3ggd_A          135 H  135 (245)
T ss_dssp             T
T ss_pred             h
Confidence            4

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.57  E-value=1.1e-07  Score=82.44  Aligned_cols=76  Identities=11%  Similarity=-0.032  Sum_probs=55.4

Q ss_pred             HhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---CCeEEEeccccC----CCCCCC
Q 038698          194 ASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---VPAVIGVLGTIH----LPYPSR  266 (283)
Q Consensus       194 ~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---~~a~~~v~da~r----LPFpd~  266 (283)
                      .+.+++..+  .+|||+|||+|.++..|+++.. ...+.++|+++.+++.|.++.   ....+...++..    +|++ +
T Consensus        67 l~~~~~~~~--~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~  142 (230)
T 1fbn_A           67 LKVMPIKRD--SKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-E  142 (230)
T ss_dssp             CCCCCCCTT--CEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-C
T ss_pred             ccccCCCCC--CEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-c
Confidence            344444333  6899999999999999988621 225678899999988876542   234555667777    8888 8


Q ss_pred             ceeeeee
Q 038698          267 AFDMAQC  273 (283)
Q Consensus       267 SFDlV~c  273 (283)
                      +||+|++
T Consensus       143 ~~D~v~~  149 (230)
T 1fbn_A          143 KVDVIYE  149 (230)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEEE
Confidence            9999984

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.56  E-value=1.2e-07  Score=82.68  Aligned_cols=81  Identities=14%  Similarity=0.149  Sum_probs=60.6

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLP  262 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLP  262 (283)
                      +..|.+.+....+  .+|||+|||+|.++..|+++ +. ...+.++|+++.+++.|+++    +.+  ..+...|+.. +
T Consensus        82 ~~~i~~~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~  157 (255)
T 3mb5_A           82 AALIVAYAGISPG--DFIVEAGVGSGALTLFLANIVGP-EGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE-G  157 (255)
T ss_dssp             HHHHHHHTTCCTT--CEEEEECCTTSHHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG-C
T ss_pred             HHHHHHhhCCCCC--CEEEEecCCchHHHHHHHHHhCC-CeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh-c
Confidence            4466667766545  68999999999999999887 21 12467789999998888754    553  5566667664 4


Q ss_pred             CCCCceeeeeec
Q 038698          263 YPSRAFDMAQCS  274 (283)
Q Consensus       263 Fpd~SFDlV~cs  274 (283)
                      +++++||+|++.
T Consensus       158 ~~~~~~D~v~~~  169 (255)
T 3mb5_A          158 IEEENVDHVILD  169 (255)
T ss_dssp             CCCCSEEEEEEC
T ss_pred             cCCCCcCEEEEC
Confidence            889999999985

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.55  E-value=9.7e-08  Score=89.09  Aligned_cols=76  Identities=14%  Similarity=0.110  Sum_probs=56.0

Q ss_pred             hCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCCCCCCceee
Q 038698          196 VIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLPYPSRAFDM  270 (283)
Q Consensus       196 ~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLPFpd~SFDl  270 (283)
                      ++.+..|  .+|||||||+|.+++.++.+.. ...+.++|+++++++.|+++    |. ...+..+++..+|  +++||+
T Consensus       117 la~l~~g--~rVLDIGcG~G~~ta~~lA~~~-ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDv  191 (298)
T 3fpf_A          117 LGRFRRG--ERAVFIGGGPLPLTGILLSHVY-GMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDV  191 (298)
T ss_dssp             HTTCCTT--CEEEEECCCSSCHHHHHHHHTT-CCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSE
T ss_pred             HcCCCCc--CEEEEECCCccHHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCE
Confidence            4555444  7999999999988766554322 33678889999999988764    65 3556777887776  899999


Q ss_pred             eeeccc
Q 038698          271 AQCSRC  276 (283)
Q Consensus       271 V~cs~~  276 (283)
                      |++...
T Consensus       192 V~~~a~  197 (298)
T 3fpf_A          192 LMVAAL  197 (298)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            998644

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.55  E-value=1e-07  Score=85.19  Aligned_cols=79  Identities=13%  Similarity=0.207  Sum_probs=56.0

Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc-----CC-CeEEEeccccCCCCC
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER-----GV-PAVIGVLGTIHLPYP  264 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er-----g~-~a~~~v~da~rLPFp  264 (283)
                      .+.+.+....+  .+|||+|||+|.++..|++. .. ...+.++|+++.+++.|.++     |. .+.+..+++.. +++
T Consensus       101 ~~~~~~~~~~~--~~VLD~G~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~  176 (275)
T 1yb2_A          101 YIIMRCGLRPG--MDILEVGVGSGNMSSYILYALNG-KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FIS  176 (275)
T ss_dssp             -----CCCCTT--CEEEEECCTTSHHHHHHHHHHTT-SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCC
T ss_pred             HHHHHcCCCCc--CEEEEecCCCCHHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCc
Confidence            45555655444  68999999999999999886 11 22567889999998888754     43 35566667766 888


Q ss_pred             CCceeeeeec
Q 038698          265 SRAFDMAQCS  274 (283)
Q Consensus       265 d~SFDlV~cs  274 (283)
                      +++||+|++.
T Consensus       177 ~~~fD~Vi~~  186 (275)
T 1yb2_A          177 DQMYDAVIAD  186 (275)
T ss_dssp             SCCEEEEEEC
T ss_pred             CCCccEEEEc
Confidence            9999999984

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.55  E-value=2.4e-08  Score=80.02  Aligned_cols=79  Identities=14%  Similarity=0.091  Sum_probs=53.0

Q ss_pred             HHHHHhhCC-CCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCC-----
Q 038698          190 IDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLP-----  262 (283)
Q Consensus       190 id~I~~~l~-~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLP-----  262 (283)
                      +..+.+.+. ...+  .+|||+|||+|.++..|+++ +.. ..+.++|+++ +++.     ....+..++...+|     
T Consensus        10 l~~~~~~~~~~~~~--~~vLd~G~G~G~~~~~l~~~~~~~-~~v~~~D~~~-~~~~-----~~~~~~~~d~~~~~~~~~~   80 (180)
T 1ej0_A           10 LDEIQQSDKLFKPG--MTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLP-MDPI-----VGVDFLQGDFRDELVMKAL   80 (180)
T ss_dssp             HHHHHHHHCCCCTT--CEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSC-CCCC-----TTEEEEESCTTSHHHHHHH
T ss_pred             HHHHHHHhCCCCCC--CeEEEeCCCCCHHHHHHHHHhCCC-CeEEEEECcc-cccc-----CcEEEEEcccccchhhhhh
Confidence            445555554 3333  58999999999999988876 211 1344556555 3221     23456667888877     


Q ss_pred             ---CCCCceeeeeecccc
Q 038698          263 ---YPSRAFDMAQCSRCL  277 (283)
Q Consensus       263 ---Fpd~SFDlV~cs~~L  277 (283)
                         +++++||+|++...+
T Consensus        81 ~~~~~~~~~D~i~~~~~~   98 (180)
T 1ej0_A           81 LERVGDSKVQVVMSDMAP   98 (180)
T ss_dssp             HHHHTTCCEEEEEECCCC
T ss_pred             hccCCCCceeEEEECCCc
Confidence               889999999997665

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.54  E-value=2e-07  Score=82.75  Aligned_cols=82  Identities=10%  Similarity=0.159  Sum_probs=63.0

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---CCeEEEeccccCCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---VPAVIGVLGTIHLPY  263 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---~~a~~~v~da~rLPF  263 (283)
                      ...++.|.+.+....+  .+|||||||+|.++..|++++   ..+.++|+++.+++.|.++-   ....+..+|+..+||
T Consensus        16 ~~~~~~i~~~~~~~~~--~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~   90 (244)
T 1qam_A           16 KHNIDKIMTNIRLNEH--DNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKF   90 (244)
T ss_dssp             HHHHHHHHTTCCCCTT--CEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCC
T ss_pred             HHHHHHHHHhCCCCCC--CEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCc
Confidence            4567888888876444  689999999999999999985   35678899999999888752   245567778999999


Q ss_pred             CC-Cceeeeeec
Q 038698          264 PS-RAFDMAQCS  274 (283)
Q Consensus       264 pd-~SFDlV~cs  274 (283)
                      ++ ..|+ |+++
T Consensus        91 ~~~~~~~-vv~n  101 (244)
T 1qam_A           91 PKNQSYK-IFGN  101 (244)
T ss_dssp             CSSCCCE-EEEE
T ss_pred             ccCCCeE-EEEe
Confidence            85 5664 4443

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.54  E-value=8.1e-08  Score=83.16  Aligned_cols=71  Identities=8%  Similarity=-0.078  Sum_probs=50.5

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHH----HHHHcCCCeEEEeccccC---CCCCCCceeeeeeccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQ----FALERGVPAVIGVLGTIH---LPYPSRAFDMAQCSRC  276 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq----~A~erg~~a~~~v~da~r---LPFpd~SFDlV~cs~~  276 (283)
                      .+|||+|||+|.++..|+++.-....+.++|+++.+++    .|.++ ....+..+++..   +|+.+++||+|+|...
T Consensus        79 ~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~  156 (233)
T 2ipx_A           79 AKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFADVA  156 (233)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEECCC
T ss_pred             CEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEcCC
Confidence            68999999999999999886101124567888876544    34333 345566667665   6788899999999654

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.53  E-value=7.3e-08  Score=81.11  Aligned_cols=69  Identities=17%  Similarity=0.113  Sum_probs=52.3

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCCCCceeeeeecc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYPSRAFDMAQCSR  275 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFpd~SFDlV~cs~  275 (283)
                      .+|||+|||+|.++..|+++.. ...+.++|+++.+++.|.++    +.. ..+...+...++ ++++||+|+|..
T Consensus        67 ~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~  140 (207)
T 1jsx_A           67 ERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA  140 (207)
T ss_dssp             SEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC
T ss_pred             CeEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEec
Confidence            5899999999999998887521 22567889999988887653    543 556666777766 678999999864

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.53  E-value=2e-07  Score=86.40  Aligned_cols=86  Identities=17%  Similarity=0.196  Sum_probs=62.1

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLP  262 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLP  262 (283)
                      +...+.|.+.++...+  .+|||+|||+|.++..|++++.. ..+.++|+++.+++.|+++    ++...+...+.  ++
T Consensus       182 d~~~~~ll~~l~~~~~--~~VLDlGcG~G~~~~~la~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~--~~  256 (343)
T 2pjd_A          182 DVGSQLLLSTLTPHTK--GKVLDVGCGAGVLSVAFARHSPK-IRLTLCDVSAPAVEASRATLAANGVEGEVFASNV--FS  256 (343)
T ss_dssp             CHHHHHHHHHSCTTCC--SBCCBTTCTTSHHHHHHHHHCTT-CBCEEEESBHHHHHHHHHHHHHTTCCCEEEECST--TT
T ss_pred             cHHHHHHHHhcCcCCC--CeEEEecCccCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccc--cc
Confidence            4456677777754333  48999999999999999887532 2567889999988887654    45544554554  34


Q ss_pred             CCCCceeeeeecccc
Q 038698          263 YPSRAFDMAQCSRCL  277 (283)
Q Consensus       263 Fpd~SFDlV~cs~~L  277 (283)
                      +.+++||+|+|+..+
T Consensus       257 ~~~~~fD~Iv~~~~~  271 (343)
T 2pjd_A          257 EVKGRFDMIISNPPF  271 (343)
T ss_dssp             TCCSCEEEEEECCCC
T ss_pred             cccCCeeEEEECCCc
Confidence            558899999998766

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.53  E-value=8.5e-08  Score=87.89  Aligned_cols=82  Identities=20%  Similarity=0.270  Sum_probs=59.6

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCC
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLP  262 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLP  262 (283)
                      ..++.|.+.+....+  .+|||||||+|.++..|++++.   .+.++|+++.+++.|.++    +. ...+..+|+..+|
T Consensus        29 ~i~~~i~~~~~~~~~--~~VLDiG~G~G~lt~~La~~~~---~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~  103 (299)
T 2h1r_A           29 GILDKIIYAAKIKSS--DIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV  103 (299)
T ss_dssp             HHHHHHHHHHCCCTT--CEEEEECCTTSTTHHHHTTTSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC
T ss_pred             HHHHHHHHhcCCCCc--CEEEEEcCcCcHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCC
Confidence            356777777776444  6899999999999999998743   567889999998887654    43 3445566777777


Q ss_pred             CCCCceeeeeeccc
Q 038698          263 YPSRAFDMAQCSRC  276 (283)
Q Consensus       263 Fpd~SFDlV~cs~~  276 (283)
                      ++  +||+|+|+..
T Consensus       104 ~~--~~D~Vv~n~p  115 (299)
T 2h1r_A          104 FP--KFDVCTANIP  115 (299)
T ss_dssp             CC--CCSEEEEECC
T ss_pred             cc--cCCEEEEcCC
Confidence            65  8999999643

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.52  E-value=2.1e-07  Score=85.85  Aligned_cols=86  Identities=21%  Similarity=0.234  Sum_probs=61.2

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHLPY  263 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rLPF  263 (283)
                      ++.|.+.++...  ..+|||||||+|.++..|+++.. ...+.++|+ +.+++.|.++    ++  ...+..++... ++
T Consensus       171 ~~~~~~~~~~~~--~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~  245 (374)
T 1qzz_A          171 YEAPADAYDWSA--VRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PL  245 (374)
T ss_dssp             THHHHHTSCCTT--CCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC
T ss_pred             HHHHHHhCCCCC--CCEEEEECCCcCHHHHHHHHHCC-CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cC
Confidence            345666666533  36999999999999999988632 224567888 8888877653    43  35566667544 45


Q ss_pred             CCCceeeeeecccccccc
Q 038698          264 PSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       264 pd~SFDlV~cs~~Li~W~  281 (283)
                      +.+ ||+|+|+.++.+|.
T Consensus       246 ~~~-~D~v~~~~vl~~~~  262 (374)
T 1qzz_A          246 PVT-ADVVLLSFVLLNWS  262 (374)
T ss_dssp             SCC-EEEEEEESCGGGSC
T ss_pred             CCC-CCEEEEeccccCCC
Confidence            544 99999999998774

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.51  E-value=7.9e-08  Score=85.49  Aligned_cols=81  Identities=19%  Similarity=0.090  Sum_probs=57.4

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLP  262 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLP  262 (283)
                      ..+++.|.+.+.  .+  .+|||+|||+|.++..+++.+.   .+.++|+++.+++.|+++    ++...+...+... +
T Consensus       108 ~~~~~~l~~~~~--~~--~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~-~  179 (254)
T 2nxc_A          108 RLALKALARHLR--PG--DKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-A  179 (254)
T ss_dssp             HHHHHHHHHHCC--TT--CEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-H
T ss_pred             HHHHHHHHHhcC--CC--CEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh-c
Confidence            445666666543  23  6899999999999999888754   567788888888777653    4444454455444 3


Q ss_pred             CCCCceeeeeecc
Q 038698          263 YPSRAFDMAQCSR  275 (283)
Q Consensus       263 Fpd~SFDlV~cs~  275 (283)
                      +++++||+|+++.
T Consensus       180 ~~~~~fD~Vv~n~  192 (254)
T 2nxc_A          180 LPFGPFDLLVANL  192 (254)
T ss_dssp             GGGCCEEEEEEEC
T ss_pred             CcCCCCCEEEECC
Confidence            5678999999974

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.51  E-value=4.7e-07  Score=76.30  Aligned_cols=69  Identities=10%  Similarity=0.004  Sum_probs=54.3

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCCCceeeeeeccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPSRAFDMAQCSRCLI  278 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd~SFDlV~cs~~Li  278 (283)
                      .+|||+|||+|.++..|++++..  .+.++|+++.+++.|.++    ++...+..+++..+|   ++||+|+++-...
T Consensus        51 ~~vlD~g~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~  123 (207)
T 1wy7_A           51 KVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFG  123 (207)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCS
T ss_pred             CEEEEeeCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCc
Confidence            68999999999999999887432  467889999999888764    335566677877775   4899999986553

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.51  E-value=1.1e-07  Score=83.64  Aligned_cols=68  Identities=18%  Similarity=0.206  Sum_probs=46.7

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccCh-HHHHHHH---HH----cCCC-eEEEeccccCCCCC-CCceeeeee
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNH-EAQVQFA---LE----RGVP-AVIGVLGTIHLPYP-SRAFDMAQC  273 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s-~a~vq~A---~e----rg~~-a~~~v~da~rLPFp-d~SFDlV~c  273 (283)
                      .+|||||||+|.++..|+++.. ...+.++|++ +++++.|   ++    .+.+ ..+..++++.||.. .+.||.|++
T Consensus        26 ~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~  103 (225)
T 3p2e_A           26 RVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI  103 (225)
T ss_dssp             EEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred             CEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence            6899999999999999986432 3356788998 6666655   43    2553 56777788888642 245555544

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.50  E-value=5.3e-07  Score=80.37  Aligned_cols=87  Identities=14%  Similarity=0.169  Sum_probs=62.0

Q ss_pred             hhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccC
Q 038698          186 ADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIH  260 (283)
Q Consensus       186 a~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~r  260 (283)
                      .+..++.+.+.++ ..  ..+|||+|||+|.++..|++... ...+.++|+++.+++.|+++    +++ ..+..++...
T Consensus        95 te~l~~~~l~~~~-~~--~~~vLDlG~GsG~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~  170 (276)
T 2b3t_A           95 TECLVEQALARLP-EQ--PCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS  170 (276)
T ss_dssp             HHHHHHHHHHHSC-SS--CCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG
T ss_pred             HHHHHHHHHHhcc-cC--CCEEEEecCCccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhh
Confidence            4556777777775 22  25899999999999999886521 22567889999998887654    543 5566566544


Q ss_pred             CCCCCCceeeeeecccc
Q 038698          261 LPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       261 LPFpd~SFDlV~cs~~L  277 (283)
                       ++++++||+|+|+-..
T Consensus       171 -~~~~~~fD~Iv~npPy  186 (276)
T 2b3t_A          171 -ALAGQQFAMIVSNPPY  186 (276)
T ss_dssp             -GGTTCCEEEEEECCCC
T ss_pred             -hcccCCccEEEECCCC
Confidence             4567899999998444

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.50  E-value=3.4e-07  Score=85.48  Aligned_cols=86  Identities=20%  Similarity=0.146  Sum_probs=63.4

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHLPY  263 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rLPF  263 (283)
                      .+.|.+.++...  ..+|||||||+|.++..|+++.. ...+.+.|+ +.+++.|.++    ++  .+.+...|.. .|+
T Consensus       191 ~~~l~~~~~~~~--~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~  265 (369)
T 3gwz_A          191 AGQVAAAYDFSG--AATAVDIGGGRGSLMAAVLDAFP-GLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETI  265 (369)
T ss_dssp             HHHHHHHSCCTT--CSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCC
T ss_pred             HHHHHHhCCCcc--CcEEEEeCCCccHHHHHHHHHCC-CCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCC
Confidence            455666666533  47999999999999999988632 224567788 7888777653    43  3556666766 688


Q ss_pred             CCCceeeeeecccccccc
Q 038698          264 PSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       264 pd~SFDlV~cs~~Li~W~  281 (283)
                      |+ .||+|+|..+|..|.
T Consensus       266 p~-~~D~v~~~~vlh~~~  282 (369)
T 3gwz_A          266 PD-GADVYLIKHVLHDWD  282 (369)
T ss_dssp             CS-SCSEEEEESCGGGSC
T ss_pred             CC-CceEEEhhhhhccCC
Confidence            87 899999999998885

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.49  E-value=9.6e-08  Score=81.02  Aligned_cols=59  Identities=19%  Similarity=0.205  Sum_probs=44.1

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeeccccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~W  280 (283)
                      .+|||||||+|.++..|. ..++++     |+++.        .+  .+..++...+|+++++||+|+|..++ +|
T Consensus        69 ~~vLDiG~G~G~~~~~l~-~~v~~~-----D~s~~--------~~--~~~~~d~~~~~~~~~~fD~v~~~~~l-~~  127 (215)
T 2zfu_A           69 LVVADFGCGDCRLASSIR-NPVHCF-----DLASL--------DP--RVTVCDMAQVPLEDESVDVAVFCLSL-MG  127 (215)
T ss_dssp             SCEEEETCTTCHHHHHCC-SCEEEE-----ESSCS--------ST--TEEESCTTSCSCCTTCEEEEEEESCC-CS
T ss_pred             CeEEEECCcCCHHHHHhh-ccEEEE-----eCCCC--------Cc--eEEEeccccCCCCCCCEeEEEEehhc-cc
Confidence            589999999999998884 334444     44433        22  24456888899999999999999988 44

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.49  E-value=5.7e-07  Score=83.71  Aligned_cols=89  Identities=12%  Similarity=0.087  Sum_probs=63.9

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIH  260 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~r  260 (283)
                      ..|.+.|.+.+....+  .+|||||||+|.++..+++++.  ..+.++|.++ +++.|+++    +.  ...+..++...
T Consensus        36 ~~y~~~i~~~l~~~~~--~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~  110 (348)
T 2y1w_A           36 GTYQRAILQNHTDFKD--KIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEE  110 (348)
T ss_dssp             HHHHHHHHHTGGGTTT--CEEEEETCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             HHHHHHHHhccccCCc--CEEEEcCCCccHHHHHHHhCCC--CEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhh
Confidence            5677888888765444  6899999999999999888743  1345566664 55555433    44  35566778888


Q ss_pred             CCCCCCceeeeeecccccccc
Q 038698          261 LPYPSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       261 LPFpd~SFDlV~cs~~Li~W~  281 (283)
                      ++++ ++||+|+|..++..|.
T Consensus       111 ~~~~-~~~D~Ivs~~~~~~~~  130 (348)
T 2y1w_A          111 VSLP-EQVDIIISEPMGYMLF  130 (348)
T ss_dssp             CCCS-SCEEEEEECCCBTTBT
T ss_pred             CCCC-CceeEEEEeCchhcCC
Confidence            8887 6899999987765553

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.49  E-value=1.9e-07  Score=78.14  Aligned_cols=67  Identities=15%  Similarity=0.120  Sum_probs=46.7

Q ss_pred             cEEeecCCCccHHHHHHhhcCCe-eEeeccccChHHHHHHHHHcCCCeEEEeccccCCC---------------------
Q 038698          205 RTALDTGCGVASWGAYLLKRNVL-TMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLP---------------------  262 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~-~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLP---------------------  262 (283)
                      .+|||+|||+|.++..|+++... ...+.++|+++.+      ....+.+..++...++                     
T Consensus        24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~   97 (201)
T 2plw_A           24 KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYK   97 (201)
T ss_dssp             EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC------CCTTCEEEECCTTTTSSCCC-----------CHHHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC------CCCCceEEEccccchhhhhhccccccccccchhhHHH
Confidence            68999999999999999876320 1245566666521      1112445566777777                     


Q ss_pred             ----CCCCceeeeeecccc
Q 038698          263 ----YPSRAFDMAQCSRCL  277 (283)
Q Consensus       263 ----Fpd~SFDlV~cs~~L  277 (283)
                          |++++||+|+|..++
T Consensus        98 ~~~~~~~~~fD~v~~~~~~  116 (201)
T 2plw_A           98 LKEILQDKKIDIILSDAAV  116 (201)
T ss_dssp             HHHHHTTCCEEEEEECCCC
T ss_pred             HHhhcCCCcccEEEeCCCc
Confidence                788999999997664

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.49  E-value=2.5e-07  Score=79.80  Aligned_cols=79  Identities=14%  Similarity=0.046  Sum_probs=59.0

Q ss_pred             HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCCCCC
Q 038698          191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHLPYP  264 (283)
Q Consensus       191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rLPFp  264 (283)
                      ..+.+.+....+  .+|||+|||+|.++..|++++   ..+.++|+++.+++.|+++    ++  ...+...+.....++
T Consensus        81 ~~~~~~~~~~~~--~~vldiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  155 (248)
T 2yvl_A           81 FYIALKLNLNKE--KRVLEFGTGSGALLAVLSEVA---GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVP  155 (248)
T ss_dssp             HHHHHHTTCCTT--CEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCC
T ss_pred             HHHHHhcCCCCC--CEEEEeCCCccHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccC
Confidence            356666665444  689999999999999998872   3567889999998888754    43  345555676665447


Q ss_pred             CCceeeeeec
Q 038698          265 SRAFDMAQCS  274 (283)
Q Consensus       265 d~SFDlV~cs  274 (283)
                      +++||+|++.
T Consensus       156 ~~~~D~v~~~  165 (248)
T 2yvl_A          156 EGIFHAAFVD  165 (248)
T ss_dssp             TTCBSEEEEC
T ss_pred             CCcccEEEEC
Confidence            8899999985

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.49  E-value=1.8e-07  Score=85.42  Aligned_cols=75  Identities=23%  Similarity=0.201  Sum_probs=56.5

Q ss_pred             CccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCCCCCCCceeeeeeccc
Q 038698          203 SVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHLPYPSRAFDMAQCSRC  276 (283)
Q Consensus       203 ~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rLPFpd~SFDlV~cs~~  276 (283)
                      ...+|||||||+|.++..|+++... ..+.++|+ +.+++.|.++    ++  .+.+...|.. .|+|. +||+|+|..+
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v  244 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHED-LSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV  244 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCC-CeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence            3479999999999999999885321 24556788 8888777653    43  3556666765 57776 8999999999


Q ss_pred             ccccc
Q 038698          277 LIPWT  281 (283)
Q Consensus       277 Li~W~  281 (283)
                      |.+|.
T Consensus       245 lh~~~  249 (332)
T 3i53_A          245 LHDWD  249 (332)
T ss_dssp             GGGSC
T ss_pred             hccCC
Confidence            98885

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.48  E-value=1.1e-07  Score=87.36  Aligned_cols=83  Identities=17%  Similarity=0.134  Sum_probs=55.7

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHcC----------------CCeE
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALERG----------------VPAV  252 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~erg----------------~~a~  252 (283)
                      +..+.+.+.+..|  .+|||+|||+|.++..|++. +.. ..+.++|+++.+++.|+++.                ..+.
T Consensus        94 ~~~~l~~l~~~~g--~~VLDiG~G~G~~~~~la~~~g~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~  170 (336)
T 2b25_A           94 INMILSMMDINPG--DTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD  170 (336)
T ss_dssp             HHHHHHHHTCCTT--CEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred             HHHHHHhcCCCCC--CEEEEeCCCcCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceE
Confidence            4456666666555  68999999999999999886 321 24677899998888876531                2355


Q ss_pred             EEeccccCC--CCCCCceeeeeecc
Q 038698          253 IGVLGTIHL--PYPSRAFDMAQCSR  275 (283)
Q Consensus       253 ~~v~da~rL--PFpd~SFDlV~cs~  275 (283)
                      +..+++..+  ++++++||+|++..
T Consensus       171 ~~~~d~~~~~~~~~~~~fD~V~~~~  195 (336)
T 2b25_A          171 FIHKDISGATEDIKSLTFDAVALDM  195 (336)
T ss_dssp             EEESCTTCCC-------EEEEEECS
T ss_pred             EEECChHHcccccCCCCeeEEEECC
Confidence            666777776  68889999999864

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.48  E-value=1.5e-07  Score=81.10  Aligned_cols=87  Identities=13%  Similarity=0.109  Sum_probs=59.2

Q ss_pred             HHHHHHHhhCC--CCCCCccEEeecCCCccHHHHHHhhcCCe-----eEeeccccChHHHHHHHHHc----C------CC
Q 038698          188 AYIDELASVIP--IKDGSVRTALDTGCGVASWGAYLLKRNVL-----TMSFAPRDNHEAQVQFALER----G------VP  250 (283)
Q Consensus       188 ~Yid~I~~~l~--~~~g~~r~VLDVGCGtGsfaa~L~~r~v~-----~~sla~~D~s~a~vq~A~er----g------~~  250 (283)
                      .....+.+.+.  ...+  .+|||||||+|.++..|+++.-.     ...+.++|+++++++.|.++    +      ..
T Consensus        69 ~~~~~~~~~l~~~~~~~--~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~  146 (227)
T 1r18_A           69 HMHAFALEYLRDHLKPG--ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ  146 (227)
T ss_dssp             HHHHHHHHHTTTTCCTT--CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhhCCCC--CEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCc
Confidence            34445556653  3333  68999999999999988874110     01456778888888877654    2      23


Q ss_pred             eEEEeccccCCCCCC-Cceeeeeecccc
Q 038698          251 AVIGVLGTIHLPYPS-RAFDMAQCSRCL  277 (283)
Q Consensus       251 a~~~v~da~rLPFpd-~SFDlV~cs~~L  277 (283)
                      ..+...+... ++++ ++||+|++...+
T Consensus       147 v~~~~~d~~~-~~~~~~~fD~I~~~~~~  173 (227)
T 1r18_A          147 LLIVEGDGRK-GYPPNAPYNAIHVGAAA  173 (227)
T ss_dssp             EEEEESCGGG-CCGGGCSEEEEEECSCB
T ss_pred             eEEEECCccc-CCCcCCCccEEEECCch
Confidence            4566667655 6766 899999998776

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.47  E-value=1.9e-07  Score=86.98  Aligned_cols=75  Identities=17%  Similarity=0.231  Sum_probs=57.7

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCC--CCCCCceeeeeecc
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHL--PYPSRAFDMAQCSR  275 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rL--PFpd~SFDlV~cs~  275 (283)
                      ..+|||||||+|.++..|+++.. ...+.++|+ +.+++.|.++    +.  .+.+..+|....  |+| ++||+|+++.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~  256 (363)
T 3dp7_A          180 PKRLLDIGGNTGKWATQCVQYNK-EVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQ  256 (363)
T ss_dssp             CSEEEEESCTTCHHHHHHHHHST-TCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEES
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEec
Confidence            47999999999999999988532 225677888 7888888764    33  255666676664  787 8999999999


Q ss_pred             cccccc
Q 038698          276 CLIPWT  281 (283)
Q Consensus       276 ~Li~W~  281 (283)
                      +|-.|.
T Consensus       257 vlh~~~  262 (363)
T 3dp7_A          257 FLDCFS  262 (363)
T ss_dssp             CSTTSC
T ss_pred             hhhhCC
Confidence            998785

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.47  E-value=2.5e-07  Score=83.61  Aligned_cols=81  Identities=16%  Similarity=0.196  Sum_probs=62.7

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---CCeEEEeccccCCCCC
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---VPAVIGVLGTIHLPYP  264 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---~~a~~~v~da~rLPFp  264 (283)
                      ..++.|.+.+....+  .+|||||||+|.++..|++++.   .+.++|+++.+++.+.++-   ....+..+|+..++|+
T Consensus        16 ~i~~~iv~~~~~~~~--~~VLEIG~G~G~lt~~La~~~~---~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~   90 (255)
T 3tqs_A           16 FVLQKIVSAIHPQKT--DTLVEIGPGRGALTDYLLTECD---NLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS   90 (255)
T ss_dssp             HHHHHHHHHHCCCTT--CEEEEECCTTTTTHHHHTTTSS---EEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred             HHHHHHHHhcCCCCc--CEEEEEcccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence            457788888876555  6899999999999999999853   5678899999998887651   3456777899999886


Q ss_pred             C----Cceeeeeec
Q 038698          265 S----RAFDMAQCS  274 (283)
Q Consensus       265 d----~SFDlV~cs  274 (283)
                      +    ..|| |+++
T Consensus        91 ~~~~~~~~~-vv~N  103 (255)
T 3tqs_A           91 SVKTDKPLR-VVGN  103 (255)
T ss_dssp             GSCCSSCEE-EEEE
T ss_pred             HhccCCCeE-EEec
Confidence            4    5799 4443

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.46  E-value=3e-07  Score=85.00  Aligned_cols=87  Identities=20%  Similarity=0.218  Sum_probs=63.4

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCCC
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLP  262 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLP  262 (283)
                      .++.|.+.++...  ..+|||||||+|.++..|+++.. ...+.++|+ +.+++.|.++    +.+  ..+...|...+|
T Consensus       178 ~~~~l~~~~~~~~--~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  253 (359)
T 1x19_A          178 AIQLLLEEAKLDG--VKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES  253 (359)
T ss_dssp             HHHHHHHHCCCTT--CCEEEEESCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSC
T ss_pred             hHHHHHHhcCCCC--CCEEEEECCcccHHHHHHHHHCC-CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCC
Confidence            3456667776533  37999999999999999988632 124556677 6777766643    443  566777888888


Q ss_pred             CCCCceeeeeecccccccc
Q 038698          263 YPSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       263 Fpd~SFDlV~cs~~Li~W~  281 (283)
                      +++.  |+|+++.++-+|.
T Consensus       254 ~~~~--D~v~~~~vlh~~~  270 (359)
T 1x19_A          254 YPEA--DAVLFCRILYSAN  270 (359)
T ss_dssp             CCCC--SEEEEESCGGGSC
T ss_pred             CCCC--CEEEEechhccCC
Confidence            8876  9999999998774

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.45  E-value=4e-08  Score=89.73  Aligned_cols=77  Identities=17%  Similarity=0.173  Sum_probs=50.0

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHcCC-------CeEEE--ecccc
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALERGV-------PAVIG--VLGTI  259 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~erg~-------~a~~~--v~da~  259 (283)
                      ++.|.+...+..|  .+|||+|||+|.++.+|+++ .|+++|+.+ +     +..|.++..       ++.+.  .+|+.
T Consensus        71 L~~i~~~~~~~~g--~~VLDlGcGtG~~s~~la~~~~V~gVD~s~-m-----~~~a~~~~~~~~~~~~~v~~~~~~~D~~  142 (276)
T 2wa2_A           71 LAWIDERGGVELK--GTVVDLGCGRGSWSYYAASQPNVREVKAYT-L-----GTSGHEKPRLVETFGWNLITFKSKVDVT  142 (276)
T ss_dssp             HHHHHHTTSCCCC--EEEEEESCTTCHHHHHHHTSTTEEEEEEEC-C-----CCTTSCCCCCCCCTTGGGEEEECSCCGG
T ss_pred             HHHHHHcCCCCCC--CEEEEeccCCCHHHHHHHHcCCEEEEECch-h-----hhhhhhchhhhhhcCCCeEEEeccCcHh
Confidence            4555555333334  68999999999999999886 345555554 2     112222221       34555  67888


Q ss_pred             CCCCCCCceeeeeeccc
Q 038698          260 HLPYPSRAFDMAQCSRC  276 (283)
Q Consensus       260 rLPFpd~SFDlV~cs~~  276 (283)
                      .||  +++||+|+|..+
T Consensus       143 ~l~--~~~fD~Vvsd~~  157 (276)
T 2wa2_A          143 KME--PFQADTVLCDIG  157 (276)
T ss_dssp             GCC--CCCCSEEEECCC
T ss_pred             hCC--CCCcCEEEECCC
Confidence            776  789999999755

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=98.45  E-value=2.4e-07  Score=81.11  Aligned_cols=90  Identities=10%  Similarity=0.079  Sum_probs=60.8

Q ss_pred             chhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC---eEEEecc
Q 038698          185 GADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP---AVIGVLG  257 (283)
Q Consensus       185 ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~---a~~~v~d  257 (283)
                      ....++..+....+.+.+  .+|||||||+|..+..|++.-.....+.++|+++.+++.|++.    |..   ..+..++
T Consensus        40 ~~~~~l~~l~~~~~~~~~--~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gd  117 (221)
T 3dr5_A           40 MTGQLLTTLAATTNGNGS--TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSR  117 (221)
T ss_dssp             HHHHHHHHHHHHSCCTTC--CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSC
T ss_pred             HHHHHHHHHHHhhCCCCC--CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcC
Confidence            345566666666654222  4899999999999999987521123567889999988887643    544   4455555


Q ss_pred             ccC-CC-CCCCceeeeeeccc
Q 038698          258 TIH-LP-YPSRAFDMAQCSRC  276 (283)
Q Consensus       258 a~r-LP-Fpd~SFDlV~cs~~  276 (283)
                      +.. +| +++++||+|++...
T Consensus       118 a~~~l~~~~~~~fD~V~~d~~  138 (221)
T 3dr5_A          118 PLDVMSRLANDSYQLVFGQVS  138 (221)
T ss_dssp             HHHHGGGSCTTCEEEEEECCC
T ss_pred             HHHHHHHhcCCCcCeEEEcCc
Confidence            433 33 45899999998653

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.45  E-value=4.7e-08  Score=88.68  Aligned_cols=77  Identities=18%  Similarity=0.191  Sum_probs=49.6

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHcCC-------CeEEE--ecccc
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALERGV-------PAVIG--VLGTI  259 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~erg~-------~a~~~--v~da~  259 (283)
                      +..|.+...+..|  .+|||+|||+|.|+.+|+++ .|+++|+.+ +.     ..+.++..       ++.+.  .+|+.
T Consensus        63 L~~i~~~~~~~~g--~~VLDlGcGtG~~s~~la~~~~V~gvD~s~-m~-----~~a~~~~~~~~~~~~~v~~~~~~~D~~  134 (265)
T 2oxt_A           63 LAWMEERGYVELT--GRVVDLGCGRGGWSYYAASRPHVMDVRAYT-LG-----VGGHEVPRITESYGWNIVKFKSRVDIH  134 (265)
T ss_dssp             HHHHHHHTSCCCC--EEEEEESCTTSHHHHHHHTSTTEEEEEEEC-CC-----CSSCCCCCCCCBTTGGGEEEECSCCTT
T ss_pred             HHHHHHcCCCCCC--CEEEEeCcCCCHHHHHHHHcCcEEEEECch-hh-----hhhhhhhhhhhccCCCeEEEecccCHh
Confidence            4555555333334  68999999999999999886 455555554 21     11111111       34455  66877


Q ss_pred             CCCCCCCceeeeeeccc
Q 038698          260 HLPYPSRAFDMAQCSRC  276 (283)
Q Consensus       260 rLPFpd~SFDlV~cs~~  276 (283)
                      .||  +++||+|+|..+
T Consensus       135 ~l~--~~~fD~V~sd~~  149 (265)
T 2oxt_A          135 TLP--VERTDVIMCDVG  149 (265)
T ss_dssp             TSC--CCCCSEEEECCC
T ss_pred             HCC--CCCCcEEEEeCc
Confidence            776  789999999754

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.45  E-value=1.9e-07  Score=86.55  Aligned_cols=84  Identities=18%  Similarity=0.072  Sum_probs=62.9

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCCC
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLPY  263 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLPF  263 (283)
                      ....|..+.....+  .+|||+|||+|+++..++........+.+.|+++.+++.|++.    |+ ...+.++|+..+|+
T Consensus       191 la~~l~~~~~~~~~--~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~  268 (354)
T 3tma_A          191 LAQALLRLADARPG--MRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR  268 (354)
T ss_dssp             HHHHHHHHTTCCTT--CCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGG
T ss_pred             HHHHHHHHhCCCCC--CEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcc
Confidence            34556666665444  6899999999999988877531113467889999988887643    55 36677889999999


Q ss_pred             CCCceeeeeec
Q 038698          264 PSRAFDMAQCS  274 (283)
Q Consensus       264 pd~SFDlV~cs  274 (283)
                      +.++||+|+|+
T Consensus       269 ~~~~~D~Ii~n  279 (354)
T 3tma_A          269 FFPEVDRILAN  279 (354)
T ss_dssp             TCCCCSEEEEC
T ss_pred             ccCCCCEEEEC
Confidence            99999999995

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.44  E-value=2.9e-07  Score=80.73  Aligned_cols=69  Identities=14%  Similarity=0.130  Sum_probs=53.4

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc------------CC-CeEEEeccccC-CC--CCCCce
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER------------GV-PAVIGVLGTIH-LP--YPSRAF  268 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er------------g~-~a~~~v~da~r-LP--Fpd~SF  268 (283)
                      .+|||||||+|.++..|+++.. ...+.++|+++.+++.|.++            ++ +..+..+|+.. ||  |++++|
T Consensus        51 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~  129 (246)
T 2vdv_E           51 VTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQL  129 (246)
T ss_dssp             EEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCE
T ss_pred             CEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccccc
Confidence            6899999999999999998753 22567889999888877543            44 35566677765 78  899999


Q ss_pred             eeeeec
Q 038698          269 DMAQCS  274 (283)
Q Consensus       269 DlV~cs  274 (283)
                      |.|+..
T Consensus       130 d~v~~~  135 (246)
T 2vdv_E          130 SKMFFC  135 (246)
T ss_dssp             EEEEEE
T ss_pred             CEEEEE
Confidence            999854

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.44  E-value=3.5e-07  Score=80.11  Aligned_cols=57  Identities=16%  Similarity=0.098  Sum_probs=40.4

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcC-CeeEeeccccChHHHHHHHHH
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRN-VLTMSFAPRDNHEAQVQFALE  246 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~-v~~~sla~~D~s~a~vq~A~e  246 (283)
                      ..++.+.+.++..  ...+|||+|||+|.++..|+++- .....+.++|+++.+++.|++
T Consensus        38 ~l~~~~l~~~~~~--~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~   95 (250)
T 1o9g_A           38 EIFQRALARLPGD--GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAK   95 (250)
T ss_dssp             HHHHHHHHTSSCC--SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHhcccC--CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHH
Confidence            3455555554432  23689999999999999888761 123467889999999888874

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.42  E-value=5.1e-07  Score=80.38  Aligned_cols=80  Identities=19%  Similarity=0.251  Sum_probs=59.0

Q ss_pred             HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCCCC
Q 038698          191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHLPY  263 (283)
Q Consensus       191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rLPF  263 (283)
                      ..|.+.+....+  .+|||+|||+|.++..|+++ +. ...+.++|+++.+++.|++.    ++  ...+...+...+ +
T Consensus       102 ~~i~~~~~~~~~--~~VLDiG~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~  177 (277)
T 1o54_A          102 SFIAMMLDVKEG--DRIIDTGVGSGAMCAVLARAVGS-SGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-F  177 (277)
T ss_dssp             HHHHHHTTCCTT--CEEEEECCTTSHHHHHHHHHTTT-TCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-C
T ss_pred             HHHHHHhCCCCC--CEEEEECCcCCHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-c
Confidence            455666666545  58999999999999998886 32 23567889999988888654    44  345556676665 7


Q ss_pred             CCCceeeeeec
Q 038698          264 PSRAFDMAQCS  274 (283)
Q Consensus       264 pd~SFDlV~cs  274 (283)
                      ++++||+|++.
T Consensus       178 ~~~~~D~V~~~  188 (277)
T 1o54_A          178 DEKDVDALFLD  188 (277)
T ss_dssp             SCCSEEEEEEC
T ss_pred             cCCccCEEEEC
Confidence            88899999985

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.42  E-value=3.1e-07  Score=81.44  Aligned_cols=82  Identities=18%  Similarity=0.191  Sum_probs=59.0

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPS  265 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd  265 (283)
                      -+.+.++++.    ..+|||+|||+|.++..++.....+ .+.+.|+++.++++|.++    |+...+.+.+.... .+.
T Consensus        40 Y~~~~~~l~~----~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~  113 (200)
T 3fzg_A           40 YTYVFGNIKH----VSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYK  113 (200)
T ss_dssp             HHHHHHHSCC----CSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTT
T ss_pred             HHHHHhhcCC----CCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCC
Confidence            3455555643    4699999999999999998774444 678899999999988754    56533444454333 577


Q ss_pred             Cceeeeeecccc
Q 038698          266 RAFDMAQCSRCL  277 (283)
Q Consensus       266 ~SFDlV~cs~~L  277 (283)
                      ++||+|...-+|
T Consensus       114 ~~~DvVLa~k~L  125 (200)
T 3fzg_A          114 GTYDVVFLLKML  125 (200)
T ss_dssp             SEEEEEEEETCH
T ss_pred             CCcChhhHhhHH
Confidence            999999987654

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.42  E-value=3.5e-07  Score=83.27  Aligned_cols=85  Identities=15%  Similarity=0.143  Sum_probs=57.8

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----C--CCeEEEeccccCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----G--VPAVIGVLGTIHLPY  263 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g--~~a~~~v~da~rLPF  263 (283)
                      .+.+.+.++..  . .+|||||||+|.++..|+++.. ...+.+.|+ +.+++.|.++    +  ....+...+... |+
T Consensus       157 ~~~~~~~~~~~--~-~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~  230 (334)
T 2ip2_A          157 FHEIPRLLDFR--G-RSFVDVGGGSGELTKAILQAEP-SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EV  230 (334)
T ss_dssp             HHHHHHHSCCT--T-CEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CC
T ss_pred             HHHHHHhCCCC--C-CEEEEeCCCchHHHHHHHHHCC-CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CC
Confidence            44555666543  2 7999999999999999987621 123445566 5555555443    2  235566667655 67


Q ss_pred             CCCceeeeeecccccccc
Q 038698          264 PSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       264 pd~SFDlV~cs~~Li~W~  281 (283)
                      + ++||+|++..++.+|.
T Consensus       231 ~-~~~D~v~~~~vl~~~~  247 (334)
T 2ip2_A          231 P-SNGDIYLLSRIIGDLD  247 (334)
T ss_dssp             C-SSCSEEEEESCGGGCC
T ss_pred             C-CCCCEEEEchhccCCC
Confidence            7 6899999999998885

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.41  E-value=1.5e-07  Score=82.06  Aligned_cols=71  Identities=11%  Similarity=0.171  Sum_probs=53.5

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccC-CC-CCCCceeeeeeccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIH-LP-YPSRAFDMAQCSRC  276 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~r-LP-Fpd~SFDlV~cs~~  276 (283)
                      .+|||||||+|.++..|++... ...+.++|+++.+++.|+++    ++  ...+..+++.. +| +.+++||+|++...
T Consensus        73 ~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~  151 (232)
T 3ntv_A           73 KNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAA  151 (232)
T ss_dssp             CEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEETT
T ss_pred             CEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcCc
Confidence            6899999999999999998422 33577889999998888653    54  35566667644 56 66899999997643

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.40  E-value=1.2e-06  Score=78.87  Aligned_cols=70  Identities=9%  Similarity=0.042  Sum_probs=53.2

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCCCCCCceeeeeeccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLPYPSRAFDMAQCSRC  276 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLPFpd~SFDlV~cs~~  276 (283)
                      .+|||+|||+|.++..|+++.. ...+.++|+++.+++.|++.    ++ +..+..+++..+|. +++||+|++...
T Consensus       121 ~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p  195 (272)
T 3a27_A          121 EVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYV  195 (272)
T ss_dssp             CEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCC
T ss_pred             CEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCc
Confidence            6899999999999999988632 22467788998888877643    44 34566778777765 789999998754

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.40  E-value=5.4e-07  Score=88.30  Aligned_cols=85  Identities=13%  Similarity=0.114  Sum_probs=62.2

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIH  260 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~r  260 (283)
                      +.|.+.|.+.+....+  .+|||||||+|.++..|++++.  ..+.++|+++ +++.|+++    ++  .+.+..++...
T Consensus       144 ~~~~~~il~~l~~~~~--~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~  218 (480)
T 3b3j_A          144 GTYQRAILQNHTDFKD--KIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEE  218 (480)
T ss_dssp             HHHHHHHHHTGGGTTT--CEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             HHHHHHHHHhhhhcCC--CEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhh
Confidence            4567777777754333  6899999999999998888642  2456778887 77766543    54  35666778888


Q ss_pred             CCCCCCceeeeeecccc
Q 038698          261 LPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       261 LPFpd~SFDlV~cs~~L  277 (283)
                      ++++ +.||+|+|...+
T Consensus       219 ~~~~-~~fD~Ivs~~~~  234 (480)
T 3b3j_A          219 VSLP-EQVDIIISEPMG  234 (480)
T ss_dssp             CCCS-SCEEEEECCCCH
T ss_pred             CccC-CCeEEEEEeCch
Confidence            8877 589999997654

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.40  E-value=4.3e-07  Score=82.06  Aligned_cols=90  Identities=8%  Similarity=-0.111  Sum_probs=60.2

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCc---cHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---CCeEEEeccccCC
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGV---ASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---VPAVIGVLGTIHL  261 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGt---Gsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---~~a~~~v~da~rL  261 (283)
                      .+++.+.+.+.... ..++|||||||+   |.++..+.+... ...+.++|+++.+++.|+++-   ....+..+|...+
T Consensus        63 ~~~~~~~~~l~~~~-~~~~vLDlGcG~pt~G~~~~~~~~~~p-~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~  140 (274)
T 2qe6_A           63 KVLVRGVRFLAGEA-GISQFLDLGSGLPTVQNTHEVAQSVNP-DARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDP  140 (274)
T ss_dssp             HHHHHHHHHHHTTT-CCCEEEEETCCSCCSSCHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCH
T ss_pred             HHHHHHHHHHhhcc-CCCEEEEECCCCCCCChHHHHHHHhCC-CCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCc
Confidence            45566656654222 347999999999   988776665422 235678899999999887651   2355666666432


Q ss_pred             C-----------CCCCceeeeeecccccc
Q 038698          262 P-----------YPSRAFDMAQCSRCLIP  279 (283)
Q Consensus       262 P-----------Fpd~SFDlV~cs~~Li~  279 (283)
                      +           |+.++||+|++..+|-.
T Consensus       141 ~~~~~~~~~~~~~d~~~~d~v~~~~vlh~  169 (274)
T 2qe6_A          141 EYILNHPDVRRMIDFSRPAAIMLVGMLHY  169 (274)
T ss_dssp             HHHHHSHHHHHHCCTTSCCEEEETTTGGG
T ss_pred             hhhhccchhhccCCCCCCEEEEEechhhh
Confidence            1           33358999999998833

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.39  E-value=2.8e-07  Score=84.28  Aligned_cols=83  Identities=11%  Similarity=0.132  Sum_probs=64.0

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC--CCeEEEeccccCCCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG--VPAVIGVLGTIHLPYP  264 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg--~~a~~~v~da~rLPFp  264 (283)
                      ...++.|.+.+....+   +|||||||+|.++..|++++.   .+.++|+++.+++.+.++-  ....+..+|+..++++
T Consensus        33 ~~i~~~Iv~~~~~~~~---~VLEIG~G~G~lt~~L~~~~~---~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~  106 (271)
T 3fut_A           33 EAHLRRIVEAARPFTG---PVFEVGPGLGALTRALLEAGA---EVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWE  106 (271)
T ss_dssp             HHHHHHHHHHHCCCCS---CEEEECCTTSHHHHHHHHTTC---CEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGG
T ss_pred             HHHHHHHHHhcCCCCC---eEEEEeCchHHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChh
Confidence            3457788888876443   899999999999999999853   4567788888888887652  3456777899999987


Q ss_pred             CC-ceeeeeecc
Q 038698          265 SR-AFDMAQCSR  275 (283)
Q Consensus       265 d~-SFDlV~cs~  275 (283)
                      +. .||.|+++.
T Consensus       107 ~~~~~~~iv~Nl  118 (271)
T 3fut_A          107 EVPQGSLLVANL  118 (271)
T ss_dssp             GSCTTEEEEEEE
T ss_pred             hccCccEEEecC
Confidence            64 789998864

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.39  E-value=6.3e-07  Score=81.32  Aligned_cols=85  Identities=14%  Similarity=0.108  Sum_probs=62.8

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIH  260 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~r  260 (283)
                      ...++.|.++++.  |  .+|||||||+|.++..|++.+. ...+.+.|+++.+++.|.+.    |+.  ..+..+|...
T Consensus         9 s~RL~~i~~~v~~--g--~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~   83 (244)
T 3gnl_A            9 SKRLEKVASYITK--N--ERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLA   83 (244)
T ss_dssp             CHHHHHHHTTCCS--S--EEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG
T ss_pred             hHHHHHHHHhCCC--C--CEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhh
Confidence            3457788888874  4  6899999999999999998753 23567889999988888654    553  4566667666


Q ss_pred             CCCCCCceeeeeeccc
Q 038698          261 LPYPSRAFDMAQCSRC  276 (283)
Q Consensus       261 LPFpd~SFDlV~cs~~  276 (283)
                      ...++..||+|+....
T Consensus        84 ~~~~~~~~D~Iviagm   99 (244)
T 3gnl_A           84 VIEKKDAIDTIVIAGM   99 (244)
T ss_dssp             GCCGGGCCCEEEEEEE
T ss_pred             ccCccccccEEEEeCC
Confidence            5555557999886543

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.39  E-value=1.9e-07  Score=80.33  Aligned_cols=73  Identities=10%  Similarity=0.026  Sum_probs=52.1

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccC-CCCCC-----Cceeeee
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIH-LPYPS-----RAFDMAQ  272 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~r-LPFpd-----~SFDlV~  272 (283)
                      .+|||||||+|.++..|++.-.....+.++|+++.+++.|+++    +..  +.+..+++.. +|...     ++||+|+
T Consensus        60 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~  139 (221)
T 3u81_A           60 SLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVF  139 (221)
T ss_dssp             SEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEE
T ss_pred             CEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEE
Confidence            6899999999999999988421123567889999998888653    543  4566666433 44433     7999999


Q ss_pred             ecccc
Q 038698          273 CSRCL  277 (283)
Q Consensus       273 cs~~L  277 (283)
                      +....
T Consensus       140 ~d~~~  144 (221)
T 3u81_A          140 LDHWK  144 (221)
T ss_dssp             ECSCG
T ss_pred             EcCCc
Confidence            87654

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.38  E-value=6.1e-07  Score=82.50  Aligned_cols=86  Identities=22%  Similarity=0.263  Sum_probs=58.6

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHLPY  263 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rLPF  263 (283)
                      ++.|.+.++...+  .+|||||||+|.++..|+++... ..+.++|+ +.+++.|.++    ++  ...+..+|... ++
T Consensus       172 ~~~l~~~~~~~~~--~~vLDvG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~  246 (360)
T 1tw3_A          172 FDAPAAAYDWTNV--RHVLDVGGGKGGFAAAIARRAPH-VSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PL  246 (360)
T ss_dssp             THHHHHHSCCTTC--SEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CC
T ss_pred             HHHHHHhCCCccC--cEEEEeCCcCcHHHHHHHHhCCC-CEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CC
Confidence            3456666665333  68999999999999999886321 23455676 6666666543    44  35566667544 55


Q ss_pred             CCCceeeeeecccccccc
Q 038698          264 PSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       264 pd~SFDlV~cs~~Li~W~  281 (283)
                      +.+ ||+|+++.++.+|.
T Consensus       247 ~~~-~D~v~~~~vl~~~~  263 (360)
T 1tw3_A          247 PRK-ADAIILSFVLLNWP  263 (360)
T ss_dssp             SSC-EEEEEEESCGGGSC
T ss_pred             CCC-ccEEEEcccccCCC
Confidence            554 99999999997774

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.37  E-value=2.5e-07  Score=83.25  Aligned_cols=78  Identities=9%  Similarity=-0.051  Sum_probs=55.6

Q ss_pred             hCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc--CCC-eEEEecc---ccCCCCCCCce
Q 038698          196 VIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER--GVP-AVIGVLG---TIHLPYPSRAF  268 (283)
Q Consensus       196 ~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er--g~~-a~~~v~d---a~rLPFpd~SF  268 (283)
                      .|++++|  .+|||+|||+|+++..|++. +..+ .+.++|+++.+++.+.++  ..+ ......+   ....|+.+++|
T Consensus        72 ~l~ikpG--~~VldlG~G~G~~~~~la~~VG~~G-~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~v  148 (233)
T 4df3_A           72 ELPVKEG--DRILYLGIASGTTASHMSDIIGPRG-RIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGV  148 (233)
T ss_dssp             CCCCCTT--CEEEEETCTTSHHHHHHHHHHCTTC-EEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCE
T ss_pred             hcCCCCC--CEEEEecCcCCHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceE
Confidence            3556667  69999999999999999985 3322 467789999998887654  222 2222223   45678999999


Q ss_pred             eeeeeccc
Q 038698          269 DMAQCSRC  276 (283)
Q Consensus       269 DlV~cs~~  276 (283)
                      |+|++.-.
T Consensus       149 DvVf~d~~  156 (233)
T 4df3_A          149 DGLYADVA  156 (233)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEecc
Confidence            99997543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.36  E-value=3.9e-07  Score=80.43  Aligned_cols=71  Identities=15%  Similarity=0.129  Sum_probs=52.3

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccC-CCCCC--Cceeeeeecc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIH-LPYPS--RAFDMAQCSR  275 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~r-LPFpd--~SFDlV~cs~  275 (283)
                      .+|||||||+|..+..|++.-.....+.++|+++.+++.|+++    |+.  +.+..+++.. +|..+  ++||+|++..
T Consensus        65 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~  144 (248)
T 3tfw_A           65 KRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDA  144 (248)
T ss_dssp             SEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECS
T ss_pred             CEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECC
Confidence            6899999999999999998622123567889999998888654    553  5566667544 55544  4999999754

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.36  E-value=5.2e-07  Score=83.11  Aligned_cols=80  Identities=15%  Similarity=0.091  Sum_probs=58.9

Q ss_pred             HHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCCCCCCc
Q 038698          193 LASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLPYPSRA  267 (283)
Q Consensus       193 I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLPFpd~S  267 (283)
                      +...+....|  .+|||+|||+|..+..|+++......+.++|+++.+++.+.++    |+ .+.+..+|+..++..+++
T Consensus       110 ~~~~l~~~~g--~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~  187 (315)
T 1ixk_A          110 PPVALDPKPG--EIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVE  187 (315)
T ss_dssp             HHHHHCCCTT--CEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCC
T ss_pred             HHHHhCCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccccccc
Confidence            3445555445  5899999999999999987521123467889999988877644    65 455666788888777789


Q ss_pred             eeeeeec
Q 038698          268 FDMAQCS  274 (283)
Q Consensus       268 FDlV~cs  274 (283)
                      ||+|++.
T Consensus       188 fD~Il~d  194 (315)
T 1ixk_A          188 FDKILLD  194 (315)
T ss_dssp             EEEEEEE
T ss_pred             CCEEEEe
Confidence            9999984

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.35  E-value=5.3e-07  Score=84.00  Aligned_cols=84  Identities=12%  Similarity=0.071  Sum_probs=60.0

Q ss_pred             HHHHHhhCC-CCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCce
Q 038698          190 IDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAF  268 (283)
Q Consensus       190 id~I~~~l~-~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SF  268 (283)
                      ++.|.+.++ ..  ...+|||||||+|.++..|+++... +.+.++|+ +.+++.|.+. ..+.+..+|... |+++  |
T Consensus       197 ~~~l~~~~~~~~--~~~~vLDvG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~--~  268 (372)
T 1fp1_D          197 MKRMLEIYTGFE--GISTLVDVGGGSGRNLELIISKYPL-IKGINFDL-PQVIENAPPL-SGIEHVGGDMFA-SVPQ--G  268 (372)
T ss_dssp             HHHHHHHCCTTT--TCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCC--E
T ss_pred             HHHHHHHhhccC--CCCEEEEeCCCCcHHHHHHHHHCCC-CeEEEeCh-HHHHHhhhhc-CCCEEEeCCccc-CCCC--C
Confidence            345555554 32  3479999999999999999987432 24567788 7777766542 235566667766 7876  9


Q ss_pred             eeeeecccccccc
Q 038698          269 DMAQCSRCLIPWT  281 (283)
Q Consensus       269 DlV~cs~~Li~W~  281 (283)
                      |+|+++.+|-+|.
T Consensus       269 D~v~~~~~lh~~~  281 (372)
T 1fp1_D          269 DAMILKAVCHNWS  281 (372)
T ss_dssp             EEEEEESSGGGSC
T ss_pred             CEEEEecccccCC
Confidence            9999999997774

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.35  E-value=5.5e-07  Score=82.54  Aligned_cols=87  Identities=16%  Similarity=0.166  Sum_probs=58.5

Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCCC-CC
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLP-YP  264 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLP-Fp  264 (283)
                      .+.+.++... ...+|||||||+|.++..|+++... ..+.++|+ +.+++.|.++    +..  ..+..++....+ ++
T Consensus       169 ~~l~~~~~~~-~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  245 (352)
T 3mcz_A          169 DVVSELGVFA-RARTVIDLAGGHGTYLAQVLRRHPQ-LTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE  245 (352)
T ss_dssp             HHHHTCGGGT-TCCEEEEETCTTCHHHHHHHHHCTT-CEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT
T ss_pred             HHHHhCCCcC-CCCEEEEeCCCcCHHHHHHHHhCCC-CeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC
Confidence            4555555433 1479999999999999999886321 23455666 4555555432    432  556667777766 34


Q ss_pred             CCceeeeeecccccccc
Q 038698          265 SRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       265 d~SFDlV~cs~~Li~W~  281 (283)
                      .+.||+|+|+.+|.+|.
T Consensus       246 ~~~~D~v~~~~vlh~~~  262 (352)
T 3mcz_A          246 GGAADVVMLNDCLHYFD  262 (352)
T ss_dssp             TCCEEEEEEESCGGGSC
T ss_pred             CCCccEEEEecccccCC
Confidence            56799999999998775

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.34  E-value=3.5e-07  Score=82.48  Aligned_cols=92  Identities=14%  Similarity=0.046  Sum_probs=58.1

Q ss_pred             CchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccC-hHHHHHHHHHcC---------C----
Q 038698          184 QGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDN-HEAQVQFALERG---------V----  249 (283)
Q Consensus       184 ~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~-s~a~vq~A~erg---------~----  249 (283)
                      .++....+.|.+......+  .+|||+|||+|.++..|++.+.  ..+.++|+ ++.+++.|++.-         +    
T Consensus        62 ~~~~~l~~~l~~~~~~~~~--~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~  137 (281)
T 3bzb_A           62 SGARALADTLCWQPELIAG--KTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSETVK  137 (281)
T ss_dssp             CHHHHHHHHHHHCGGGTTT--CEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC---------
T ss_pred             cHHHHHHHHHHhcchhcCC--CeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCC
Confidence            3445556666665543334  5899999999999998888753  24677888 788887775431         1    


Q ss_pred             --CeEEEeccc----cCCCC--CCCceeeeeecccccc
Q 038698          250 --PAVIGVLGT----IHLPY--PSRAFDMAQCSRCLIP  279 (283)
Q Consensus       250 --~a~~~v~da----~rLPF--pd~SFDlV~cs~~Li~  279 (283)
                        .+.+..++.    ..++.  ++++||+|+++.++.+
T Consensus       138 ~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~  175 (281)
T 3bzb_A          138 RASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSF  175 (281)
T ss_dssp             -CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSC
T ss_pred             CCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccC
Confidence              122222221    11211  4689999999888744

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.34  E-value=6.4e-08  Score=85.38  Aligned_cols=80  Identities=10%  Similarity=0.183  Sum_probs=59.7

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC--C-CeEEEeccccCCCCCC
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG--V-PAVIGVLGTIHLPYPS  265 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg--~-~a~~~v~da~rLPFpd  265 (283)
                      .++.|.+.+....+  .+|||||||+|.++..|++++   ..+.++|+++.+++.|.++-  . ...+..+|+..+|+++
T Consensus        17 ~~~~i~~~~~~~~~--~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~   91 (245)
T 1yub_A           17 VLNQIIKQLNLKET--DTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPN   91 (245)
T ss_dssp             THHHHHHHCCCCSS--EEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCC
T ss_pred             HHHHHHHhcCCCCC--CEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCccc
Confidence            46677788876544  689999999999999999875   24677888888777665541  1 3456667899999985


Q ss_pred             -Cceeeeeec
Q 038698          266 -RAFDMAQCS  274 (283)
Q Consensus       266 -~SFDlV~cs  274 (283)
                       ++| .|+++
T Consensus        92 ~~~f-~vv~n  100 (245)
T 1yub_A           92 KQRY-KIVGN  100 (245)
T ss_dssp             SSEE-EEEEE
T ss_pred             CCCc-EEEEe
Confidence             789 66664

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.34  E-value=1.2e-06  Score=78.89  Aligned_cols=85  Identities=16%  Similarity=0.170  Sum_probs=63.4

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIH  260 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~r  260 (283)
                      ...++.|.++++.  |  .+|||||||+|.++..|++.+. ...+.+.|+++.+++.|++.    |+.  ..+..+|...
T Consensus         9 s~RL~~i~~~v~~--g--~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~   83 (230)
T 3lec_A            9 SKRLQKVANYVPK--G--ARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLS   83 (230)
T ss_dssp             CHHHHHHHTTSCT--T--EEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG
T ss_pred             HHHHHHHHHhCCC--C--CEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh
Confidence            4467788888874  4  6899999999999999998753 23567889999988887643    553  5566667767


Q ss_pred             CCCCCCceeeeeeccc
Q 038698          261 LPYPSRAFDMAQCSRC  276 (283)
Q Consensus       261 LPFpd~SFDlV~cs~~  276 (283)
                      .+.+++.||+|+....
T Consensus        84 ~~~~~~~~D~IviaGm   99 (230)
T 3lec_A           84 AFEEADNIDTITICGM   99 (230)
T ss_dssp             GCCGGGCCCEEEEEEE
T ss_pred             ccccccccCEEEEeCC
Confidence            6666668999875543

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.33  E-value=6.2e-08  Score=85.56  Aligned_cols=72  Identities=10%  Similarity=-0.032  Sum_probs=49.7

Q ss_pred             cEEeecCCCccHHHHHHhhc---CCeeEeeccccChHHHHHHHHHcCCCeEEEeccccC---CCCCCC-ceeeeeeccc
Q 038698          205 RTALDTGCGVASWGAYLLKR---NVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIH---LPYPSR-AFDMAQCSRC  276 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r---~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~r---LPFpd~-SFDlV~cs~~  276 (283)
                      .+|||||||+|..+..|++.   -.....+.++|+++.+++.|+.....+.+..+++..   ||+.++ +||+|++...
T Consensus        83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~  161 (236)
T 2bm8_A           83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA  161 (236)
T ss_dssp             SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred             CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc
Confidence            58999999999999998875   011224566777777666665333345666677777   476554 7999997543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.32  E-value=9e-07  Score=75.90  Aligned_cols=84  Identities=8%  Similarity=-0.100  Sum_probs=54.6

Q ss_pred             HHHHHhhCC---CCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc---CCCeEEEeccccCC-
Q 038698          190 IDELASVIP---IKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER---GVPAVIGVLGTIHL-  261 (283)
Q Consensus       190 id~I~~~l~---~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er---g~~a~~~v~da~rL-  261 (283)
                      .+.|...+.   ...+  .+|||+|||+|.++..|+++ +.. ..+.++|+++.+++.+.++   .....+..+++... 
T Consensus        59 ~~~i~~~l~~~~~~~~--~~vLDlG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~  135 (227)
T 1g8a_A           59 GAAIMNGLKNFPIKPG--KSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPE  135 (227)
T ss_dssp             HHHHHTTCCCCCCCTT--CEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGG
T ss_pred             HHHHHhhHHhcCCCCC--CEEEEEeccCCHHHHHHHHHhCCC-eEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcc
Confidence            355533343   4334  68999999999999999875 211 2456779999887766543   22455666676552 


Q ss_pred             --CCCCCceeeeeeccc
Q 038698          262 --PYPSRAFDMAQCSRC  276 (283)
Q Consensus       262 --PFpd~SFDlV~cs~~  276 (283)
                        +..+++||+|++...
T Consensus       136 ~~~~~~~~~D~v~~~~~  152 (227)
T 1g8a_A          136 EYRALVPKVDVIFEDVA  152 (227)
T ss_dssp             GGTTTCCCEEEEEECCC
T ss_pred             hhhcccCCceEEEECCC
Confidence              222469999998654

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.32  E-value=3.4e-07  Score=79.01  Aligned_cols=72  Identities=10%  Similarity=0.043  Sum_probs=53.8

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccC-CCCC--CCceeeeeecc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIH-LPYP--SRAFDMAQCSR  275 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~r-LPFp--d~SFDlV~cs~  275 (283)
                      .+|||||||+|.++..|++... ...+.++|+++.+++.|+++    +.  ...+..+++.. +|..  +++||+|++..
T Consensus        56 ~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  134 (233)
T 2gpy_A           56 ARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDA  134 (233)
T ss_dssp             SEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEG
T ss_pred             CEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECC
Confidence            5899999999999999988632 23567889999998888754    54  25565566555 3554  68999999876


Q ss_pred             cc
Q 038698          276 CL  277 (283)
Q Consensus       276 ~L  277 (283)
                      ..
T Consensus       135 ~~  136 (233)
T 2gpy_A          135 AK  136 (233)
T ss_dssp             GG
T ss_pred             CH
Confidence            54

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.31  E-value=6.8e-07  Score=75.94  Aligned_cols=70  Identities=11%  Similarity=0.095  Sum_probs=50.7

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccC-CCCCCCceeeeeecc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIH-LPYPSRAFDMAQCSR  275 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~r-LPFpd~SFDlV~cs~  275 (283)
                      .+|||||||+|..+..|++.......+.++|+++.+++.|+++    +.  ...+..+++.. +|..++ ||+|++..
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~  134 (210)
T 3c3p_A           58 QLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC  134 (210)
T ss_dssp             SEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred             CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence            5899999999999999988622123567889999988887643    43  24455566544 476667 99999863

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.31  E-value=4.6e-07  Score=83.06  Aligned_cols=73  Identities=12%  Similarity=0.044  Sum_probs=54.8

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---------CCeEEEeccccCCCC--CCCceeeee
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---------VPAVIGVLGTIHLPY--PSRAFDMAQ  272 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---------~~a~~~v~da~rLPF--pd~SFDlV~  272 (283)
                      ..+|||||||+|.++..|+++.. ...+.++|+++.+++.|+++-         ....+..+|+..+++  ++++||+|+
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi  174 (304)
T 3bwc_A           96 PERVLIIGGGDGGVLREVLRHGT-VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI  174 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence            47899999999999999987621 235678899999998887642         235566677766665  589999999


Q ss_pred             ecccc
Q 038698          273 CSRCL  277 (283)
Q Consensus       273 cs~~L  277 (283)
                      +....
T Consensus       175 ~d~~~  179 (304)
T 3bwc_A          175 IDTTD  179 (304)
T ss_dssp             EECC-
T ss_pred             ECCCC
Confidence            96543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.30  E-value=2.8e-07  Score=90.17  Aligned_cols=86  Identities=10%  Similarity=0.090  Sum_probs=62.8

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHH-----------cCC---CeE
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALE-----------RGV---PAV  252 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~e-----------rg~---~a~  252 (283)
                      ..++.|.+.+.+..+  .+|||||||+|.++..|+.. +..  .+.|+|+++.+++.|.+           .|+   .+.
T Consensus       160 ~~i~~il~~l~l~~g--d~VLDLGCGtG~l~l~lA~~~g~~--kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVe  235 (438)
T 3uwp_A          160 DLVAQMIDEIKMTDD--DLFVDLGSGVGQVVLQVAAATNCK--HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT  235 (438)
T ss_dssp             HHHHHHHHHHCCCTT--CEEEEESCTTSHHHHHHHHHCCCS--EEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEE
T ss_pred             HHHHHHHHhcCCCCC--CEEEEeCCCCCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeE
Confidence            346677777776555  68999999999999888764 321  36678888877766643           143   355


Q ss_pred             EEeccccCCCCCC--Cceeeeeecccc
Q 038698          253 IGVLGTIHLPYPS--RAFDMAQCSRCL  277 (283)
Q Consensus       253 ~~v~da~rLPFpd--~SFDlV~cs~~L  277 (283)
                      +..+|+..+||++  .+||+|+++..+
T Consensus       236 fi~GD~~~lp~~d~~~~aDVVf~Nn~~  262 (438)
T 3uwp_A          236 LERGDFLSEEWRERIANTSVIFVNNFA  262 (438)
T ss_dssp             EEECCTTSHHHHHHHHTCSEEEECCTT
T ss_pred             EEECcccCCccccccCCccEEEEcccc
Confidence            7778999999976  589999987654

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.29  E-value=1.4e-06  Score=77.97  Aligned_cols=83  Identities=11%  Similarity=-0.052  Sum_probs=53.4

Q ss_pred             HHHhhCC---CCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHH----HHHHHcCCCeEEEeccccCCC--
Q 038698          192 ELASVIP---IKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQV----QFALERGVPAVIGVLGTIHLP--  262 (283)
Q Consensus       192 ~I~~~l~---~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~v----q~A~erg~~a~~~v~da~rLP--  262 (283)
                      .|.+.+.   +..|  .+|||+|||+|.++..|++.--....+.++|+++.++    +.|.++ .+..+..+|+..++  
T Consensus        64 ~ll~~l~~~~l~~g--~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-~nv~~i~~Da~~~~~~  140 (232)
T 3id6_C           64 AILKGLKTNPIRKG--TKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-PNIFPLLADARFPQSY  140 (232)
T ss_dssp             HHHTTCSCCSCCTT--CEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-TTEEEEECCTTCGGGT
T ss_pred             HHHhhhhhcCCCCC--CEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCeEEEEcccccchhh
Confidence            4444443   4455  6999999999999999887511112456778888764    344444 34555556765532  


Q ss_pred             -CCCCceeeeeecccc
Q 038698          263 -YPSRAFDMAQCSRCL  277 (283)
Q Consensus       263 -Fpd~SFDlV~cs~~L  277 (283)
                       ...++||+|++....
T Consensus       141 ~~~~~~~D~I~~d~a~  156 (232)
T 3id6_C          141 KSVVENVDVLYVDIAQ  156 (232)
T ss_dssp             TTTCCCEEEEEECCCC
T ss_pred             hccccceEEEEecCCC
Confidence             235799999998654

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.28  E-value=6.7e-07  Score=82.40  Aligned_cols=71  Identities=17%  Similarity=0.100  Sum_probs=53.5

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc---------CCCeEEEeccccC-CCCCCCceeeeee
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER---------GVPAVIGVLGTIH-LPYPSRAFDMAQC  273 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er---------g~~a~~~v~da~r-LPFpd~SFDlV~c  273 (283)
                      ..+|||||||+|.++..|+++.. ...+..+|+++++++.|+++         .....+...|+.. |+..+++||+|++
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~  174 (304)
T 2o07_A           96 PRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT  174 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence            47999999999999999998732 23567889999999888753         1234555666544 6667899999998


Q ss_pred             cc
Q 038698          274 SR  275 (283)
Q Consensus       274 s~  275 (283)
                      ..
T Consensus       175 d~  176 (304)
T 2o07_A          175 DS  176 (304)
T ss_dssp             EC
T ss_pred             CC
Confidence            54

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.28  E-value=5.4e-07  Score=82.55  Aligned_cols=76  Identities=13%  Similarity=0.183  Sum_probs=57.5

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCe-eEeeccccChHHHHHHHHHc-CCCeEEEeccccCCCCCC
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVL-TMSFAPRDNHEAQVQFALER-GVPAVIGVLGTIHLPYPS  265 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~-~~sla~~D~s~a~vq~A~er-g~~a~~~v~da~rLPFpd  265 (283)
                      ..++.|.+.+....+  .+|||||||+|.++..|+++... ...+.++|+++.+++.+.++ .....+..+|+..+||++
T Consensus        29 ~i~~~iv~~~~~~~~--~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~  106 (279)
T 3uzu_A           29 GVIDAIVAAIRPERG--ERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS  106 (279)
T ss_dssp             HHHHHHHHHHCCCTT--CEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred             HHHHHHHHhcCCCCc--CEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence            457788888876555  68999999999999999986332 01256788999999988876 234556777999999875

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.27  E-value=1e-06  Score=80.09  Aligned_cols=83  Identities=18%  Similarity=0.233  Sum_probs=59.2

Q ss_pred             hhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEecccc
Q 038698          186 ADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTI  259 (283)
Q Consensus       186 a~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~  259 (283)
                      ....++.+.+.++...+  .+|||+|||+|.++..|+++  ....+.++|+++.+++.|.+.    ++.  +.+...+..
T Consensus       108 te~lv~~~l~~~~~~~~--~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~  183 (284)
T 1nv8_A          108 TEELVELALELIRKYGI--KTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFL  183 (284)
T ss_dssp             HHHHHHHHHHHHHHHTC--CEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTT
T ss_pred             HHHHHHHHHHHhcccCC--CEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcch
Confidence            45566666666643222  58999999999999999887  233567889999999888653    553  556666655


Q ss_pred             CCCCCCCce---eeeeec
Q 038698          260 HLPYPSRAF---DMAQCS  274 (283)
Q Consensus       260 rLPFpd~SF---DlV~cs  274 (283)
                      . +++ ++|   |+|+|+
T Consensus       184 ~-~~~-~~f~~~D~Ivsn  199 (284)
T 1nv8_A          184 E-PFK-EKFASIEMILSN  199 (284)
T ss_dssp             G-GGG-GGTTTCCEEEEC
T ss_pred             h-hcc-cccCCCCEEEEc
Confidence            4 333 589   999997

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.26  E-value=1.3e-06  Score=78.45  Aligned_cols=76  Identities=16%  Similarity=0.207  Sum_probs=59.6

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC-CCeEEEeccccCCCCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG-VPAVIGVLGTIHLPYPS  265 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg-~~a~~~v~da~rLPFpd  265 (283)
                      ...++.|.+.+....+  .+|||||||+|.++..|++++  ...+.++|+++.+++.+.++. .+..+..+|+..+||++
T Consensus        17 ~~i~~~iv~~~~~~~~--~~VLDiG~G~G~lt~~L~~~~--~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~   92 (249)
T 3ftd_A           17 EGVLKKIAEELNIEEG--NTVVEVGGGTGNLTKVLLQHP--LKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCS   92 (249)
T ss_dssp             HHHHHHHHHHTTCCTT--CEEEEEESCHHHHHHHHTTSC--CSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGG
T ss_pred             HHHHHHHHHhcCCCCc--CEEEEEcCchHHHHHHHHHcC--CCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhH
Confidence            4467888888886544  689999999999999999984  135678899999999988762 23456677899999886


Q ss_pred             C
Q 038698          266 R  266 (283)
Q Consensus       266 ~  266 (283)
                      .
T Consensus        93 ~   93 (249)
T 3ftd_A           93 L   93 (249)
T ss_dssp             S
T ss_pred             c
Confidence            4

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.25  E-value=2.1e-06  Score=80.45  Aligned_cols=89  Identities=9%  Similarity=0.029  Sum_probs=59.7

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc------C---CCeEEEecc
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER------G---VPAVIGVLG  257 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er------g---~~a~~~v~d  257 (283)
                      ..|.+.|..+.-......++|||||||+|.++..|+++.. ...+.++|+++.+++.|+++      +   ....+..+|
T Consensus       104 ~~y~e~L~~l~l~~~~~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D  182 (334)
T 1xj5_A          104 CAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGD  182 (334)
T ss_dssp             HHHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESC
T ss_pred             hHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECC
Confidence            3466655543211112347999999999999999998631 23567889999999888754      1   235566667


Q ss_pred             ccCC-C-CCCCceeeeeeccc
Q 038698          258 TIHL-P-YPSRAFDMAQCSRC  276 (283)
Q Consensus       258 a~rL-P-Fpd~SFDlV~cs~~  276 (283)
                      +... + +++++||+|++...
T Consensus       183 ~~~~l~~~~~~~fDlIi~d~~  203 (334)
T 1xj5_A          183 GVAFLKNAAEGSYDAVIVDSS  203 (334)
T ss_dssp             HHHHHHTSCTTCEEEEEECCC
T ss_pred             HHHHHHhccCCCccEEEECCC
Confidence            5442 2 46789999998543

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.25  E-value=1.2e-06  Score=82.07  Aligned_cols=83  Identities=12%  Similarity=0.062  Sum_probs=58.5

Q ss_pred             HHHHhhCC-CCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCcee
Q 038698          191 DELASVIP-IKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFD  269 (283)
Q Consensus       191 d~I~~~l~-~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFD  269 (283)
                      +.+.+.++ .  ....+|||||||+|.++..|+++... ..+.++|+ +.+++.|.++ ..+.+..+|... |+|++  |
T Consensus       192 ~~~~~~~~~~--~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~~--D  263 (368)
T 3reo_A          192 KKILEMYNGF--EGLTTIVDVGGGTGAVASMIVAKYPS-INAINFDL-PHVIQDAPAF-SGVEHLGGDMFD-GVPKG--D  263 (368)
T ss_dssp             HHHHTTCCTT--TTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--S
T ss_pred             HHHHHhcccc--cCCCEEEEeCCCcCHHHHHHHHhCCC-CEEEEEeh-HHHHHhhhhc-CCCEEEecCCCC-CCCCC--C
Confidence            44555554 3  23479999999999999999886322 24567788 6666666543 235566667666 88865  9


Q ss_pred             eeeecccccccc
Q 038698          270 MAQCSRCLIPWT  281 (283)
Q Consensus       270 lV~cs~~Li~W~  281 (283)
                      +|+++.+|-+|.
T Consensus       264 ~v~~~~vlh~~~  275 (368)
T 3reo_A          264 AIFIKWICHDWS  275 (368)
T ss_dssp             EEEEESCGGGBC
T ss_pred             EEEEechhhcCC
Confidence            999999998785

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.24  E-value=5.9e-07  Score=76.61  Aligned_cols=71  Identities=13%  Similarity=0.027  Sum_probs=50.2

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccc-cCCCCCC-----Cceeeee
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGT-IHLPYPS-----RAFDMAQ  272 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da-~rLPFpd-----~SFDlV~  272 (283)
                      .+|||||||+|.++..|+++-.....+.++|+++.+++.|+++    +..  ..+..+++ +.+|...     ++||+|+
T Consensus        66 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~  145 (225)
T 3tr6_A           66 KKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIY  145 (225)
T ss_dssp             SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEE
T ss_pred             CEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEE
Confidence            5899999999999999998622123567889999988887654    543  55666665 3333222     8999999


Q ss_pred             ecc
Q 038698          273 CSR  275 (283)
Q Consensus       273 cs~  275 (283)
                      +..
T Consensus       146 ~~~  148 (225)
T 3tr6_A          146 IDA  148 (225)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            654

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.23  E-value=1.3e-06  Score=81.67  Aligned_cols=84  Identities=17%  Similarity=0.079  Sum_probs=59.6

Q ss_pred             HHHHHhhCC-CCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCce
Q 038698          190 IDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAF  268 (283)
Q Consensus       190 id~I~~~l~-~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SF  268 (283)
                      .+.+.+.++ ..  ...+|||||||+|.++..|+++... +.+...|+ +.+++.|.++ ..+.+..+|... |+|++  
T Consensus       189 ~~~~~~~~~~~~--~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--  260 (364)
T 3p9c_A          189 TKKLLELYHGFE--GLGTLVDVGGGVGATVAAIAAHYPT-IKGVNFDL-PHVISEAPQF-PGVTHVGGDMFK-EVPSG--  260 (364)
T ss_dssp             HHHHHHHCCTTT--TCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--
T ss_pred             HHHHHHhccccc--CCCEEEEeCCCCCHHHHHHHHHCCC-CeEEEecC-HHHHHhhhhc-CCeEEEeCCcCC-CCCCC--
Confidence            345555555 32  3479999999999999999885322 23466788 6666655543 345666678777 88876  


Q ss_pred             eeeeecccccccc
Q 038698          269 DMAQCSRCLIPWT  281 (283)
Q Consensus       269 DlV~cs~~Li~W~  281 (283)
                      |+|+++.+|-+|.
T Consensus       261 D~v~~~~vlh~~~  273 (364)
T 3p9c_A          261 DTILMKWILHDWS  273 (364)
T ss_dssp             SEEEEESCGGGSC
T ss_pred             CEEEehHHhccCC
Confidence            9999999998884

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.22  E-value=7.1e-07  Score=82.38  Aligned_cols=72  Identities=14%  Similarity=0.101  Sum_probs=54.1

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeecccccccc
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~W~  281 (283)
                      ..+|||||||+|.++..|+++.. ...+.++|+ +.+++.|.+.. ...+..+|... |+|+  ||+|+++.+|-+|.
T Consensus       189 ~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~-~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~  260 (352)
T 1fp2_A          189 LESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVVENLSGSN-NLTYVGGDMFT-SIPN--ADAVLLKYILHNWT  260 (352)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCCBT-TEEEEECCTTT-CCCC--CSEEEEESCGGGSC
T ss_pred             CceEEEeCCCccHHHHHHHHHCC-CCeEEEeeC-HHHHhhcccCC-CcEEEeccccC-CCCC--ccEEEeehhhccCC
Confidence            36899999999999999988632 224677888 78777766532 25566667655 7774  99999999998885

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.21  E-value=1.3e-06  Score=72.01  Aligned_cols=57  Identities=11%  Similarity=-0.074  Sum_probs=46.7

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC-CCeEEEeccccCCCC---CCCceeeeeeccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG-VPAVIGVLGTIHLPY---PSRAFDMAQCSRCLI  278 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg-~~a~~~v~da~rLPF---pd~SFDlV~cs~~Li  278 (283)
                      .+|||||||+                + .+|++++|++.|+++. ....+.+++++.+|+   ++++||+|+|+.++.
T Consensus        14 ~~vL~~~~g~----------------v-~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~   74 (176)
T 2ld4_A           14 QFVAVVWDKS----------------S-PVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPG   74 (176)
T ss_dssp             SEEEEEECTT----------------S-CHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTT
T ss_pred             CEEEEecCCc----------------e-eeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhh
Confidence            7899999996                1 2789999999998873 235666778889998   899999999998873

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.20  E-value=1e-06  Score=79.13  Aligned_cols=78  Identities=12%  Similarity=0.002  Sum_probs=56.0

Q ss_pred             hhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCCC----CC
Q 038698          195 SVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLPY----PS  265 (283)
Q Consensus       195 ~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLPF----pd  265 (283)
                      .++....|  .+|||+|||+|.++..|++.......+.++|+++.+++.+.++    |+ .+.+...|+..++.    ++
T Consensus        77 ~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~  154 (274)
T 3ajd_A           77 IVLNPRED--DFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNE  154 (274)
T ss_dssp             HHHCCCTT--CEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTT
T ss_pred             HHhCCCCc--CEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhcc
Confidence            44444444  5899999999999999887421113567789999888877543    55 45566678777765    37


Q ss_pred             Cceeeeeec
Q 038698          266 RAFDMAQCS  274 (283)
Q Consensus       266 ~SFDlV~cs  274 (283)
                      ++||+|++.
T Consensus       155 ~~fD~Vl~d  163 (274)
T 3ajd_A          155 IFFDKILLD  163 (274)
T ss_dssp             CCEEEEEEE
T ss_pred             ccCCEEEEc
Confidence            899999986

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.19  E-value=2.1e-06  Score=76.78  Aligned_cols=82  Identities=17%  Similarity=0.201  Sum_probs=57.6

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCCC
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLP  262 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLP  262 (283)
                      .++.|.++++.  |  .+|||||||+|.++..|+..+. ...+.+.|+++..++.|++.    |+.  ..+...|... +
T Consensus         5 RL~~l~~~v~~--g--~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~-~   78 (225)
T 3kr9_A            5 RLELVASFVSQ--G--AILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLA-A   78 (225)
T ss_dssp             HHHHHHTTSCT--T--EEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG-G
T ss_pred             HHHHHHHhCCC--C--CEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhh-h
Confidence            46778888864  4  6899999999999999998754 23567889999888887643    553  4455555421 3


Q ss_pred             CCCC-ceeeeeeccc
Q 038698          263 YPSR-AFDMAQCSRC  276 (283)
Q Consensus       263 Fpd~-SFDlV~cs~~  276 (283)
                      ++.+ .||+|+....
T Consensus        79 l~~~~~~D~IviaG~   93 (225)
T 3kr9_A           79 FEETDQVSVITIAGM   93 (225)
T ss_dssp             CCGGGCCCEEEEEEE
T ss_pred             cccCcCCCEEEEcCC
Confidence            4434 6998886543

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.19  E-value=7.4e-07  Score=77.52  Aligned_cols=72  Identities=10%  Similarity=0.028  Sum_probs=51.0

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccC-CC--------------C
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIH-LP--------------Y  263 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~r-LP--------------F  263 (283)
                      .+|||||||+|.++..|++.......+.++|+++.+++.|+++    |..  ..+..+++.. +|              |
T Consensus        62 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f  141 (239)
T 2hnk_A           62 KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDF  141 (239)
T ss_dssp             SEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTT
T ss_pred             CEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccc
Confidence            5899999999999999988632123567889999888888654    442  4455555332 22              5


Q ss_pred             CC--Cceeeeeeccc
Q 038698          264 PS--RAFDMAQCSRC  276 (283)
Q Consensus       264 pd--~SFDlV~cs~~  276 (283)
                      ++  ++||+|++...
T Consensus       142 ~~~~~~fD~I~~~~~  156 (239)
T 2hnk_A          142 AFGPSSIDLFFLDAD  156 (239)
T ss_dssp             CCSTTCEEEEEECSC
T ss_pred             cCCCCCcCEEEEeCC
Confidence            55  89999998754

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.18  E-value=1.7e-06  Score=84.26  Aligned_cols=86  Identities=13%  Similarity=0.132  Sum_probs=56.5

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHH-------HHc----C--C-CeE
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFA-------LER----G--V-PAV  252 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A-------~er----g--~-~a~  252 (283)
                      ..+..|.+.+.+..+  .+|||||||+|.++..|+++ +.  ..+.++|+++.+++.|       +++    |  . .+.
T Consensus       229 ~~v~~ml~~l~l~~g--~~VLDLGCGsG~la~~LA~~~g~--~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~  304 (433)
T 1u2z_A          229 NFLSDVYQQCQLKKG--DTFMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE  304 (433)
T ss_dssp             HHHHHHHHHTTCCTT--CEEEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEE
T ss_pred             HHHHHHHHhcCCCCC--CEEEEeCCCcCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceE
Confidence            345666777766544  68999999999999999885 21  1356777777776666       432    5  2 344


Q ss_pred             EEeccccCC--CC--CCCceeeeeecccc
Q 038698          253 IGVLGTIHL--PY--PSRAFDMAQCSRCL  277 (283)
Q Consensus       253 ~~v~da~rL--PF--pd~SFDlV~cs~~L  277 (283)
                      +..++....  +|  .+++||+|+++.++
T Consensus       305 ~i~gD~~~~~~~~~~~~~~FDvIvvn~~l  333 (433)
T 1u2z_A          305 FSLKKSFVDNNRVAELIPQCDVILVNNFL  333 (433)
T ss_dssp             EEESSCSTTCHHHHHHGGGCSEEEECCTT
T ss_pred             EEEcCccccccccccccCCCCEEEEeCcc
Confidence            444443322  23  35899999987554

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.18  E-value=1e-06  Score=82.73  Aligned_cols=88  Identities=13%  Similarity=0.079  Sum_probs=61.0

Q ss_pred             hHHHHHHHhhCCC-----CCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-CC----CeEEEec
Q 038698          187 DAYIDELASVIPI-----KDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-GV----PAVIGVL  256 (283)
Q Consensus       187 ~~Yid~I~~~l~~-----~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-g~----~a~~~v~  256 (283)
                      -.|.+.|...+-.     ..+...+|||||||+|.++.+|+++.. ...+..+|+++++++.|++. +.    ...+.++
T Consensus        68 ~~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la~~~p-~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~  146 (317)
T 3gjy_A           68 FEYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFADVYP-QSRNTVVELDAELARLSREWFDIPRAPRVKIRVD  146 (317)
T ss_dssp             SHHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHHHHST-TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEES
T ss_pred             hHHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHHHHCC-CcEEEEEECCHHHHHHHHHhccccCCCceEEEEC
Confidence            3577766665532     112223999999999999999998421 12567889999999999875 22    2455566


Q ss_pred             cccCC--CCCCCceeeeeecc
Q 038698          257 GTIHL--PYPSRAFDMAQCSR  275 (283)
Q Consensus       257 da~rL--PFpd~SFDlV~cs~  275 (283)
                      |+...  .+++++||+|++..
T Consensus       147 Da~~~l~~~~~~~fDvIi~D~  167 (317)
T 3gjy_A          147 DARMVAESFTPASRDVIIRDV  167 (317)
T ss_dssp             CHHHHHHTCCTTCEEEEEECC
T ss_pred             cHHHHHhhccCCCCCEEEECC
Confidence            75543  46789999999853

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.16  E-value=9.6e-07  Score=81.39  Aligned_cols=91  Identities=18%  Similarity=0.114  Sum_probs=61.2

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc------C----CCeEEEecc
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER------G----VPAVIGVLG  257 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er------g----~~a~~~v~d  257 (283)
                      .|.+.|..+.-.......+|||||||+|.++..|+++.. ...+.++|+++.+++.|+++      +    ....+..+|
T Consensus        62 ~Y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D  140 (314)
T 1uir_A           62 IYHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD  140 (314)
T ss_dssp             HHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESC
T ss_pred             HHHHHHHHHHHhcCCCCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEch
Confidence            465555532101112347999999999999999988631 23567889999998888753      1    234566667


Q ss_pred             ccC-CCCCCCceeeeeeccccccc
Q 038698          258 TIH-LPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       258 a~r-LPFpd~SFDlV~cs~~Li~W  280 (283)
                      +.. ++..+++||+|++.... +|
T Consensus       141 ~~~~l~~~~~~fD~Ii~d~~~-~~  163 (314)
T 1uir_A          141 ARAYLERTEERYDVVIIDLTD-PV  163 (314)
T ss_dssp             HHHHHHHCCCCEEEEEEECCC-CB
T ss_pred             HHHHHHhcCCCccEEEECCCC-cc
Confidence            555 56678999999997544 54

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.15  E-value=4.1e-06  Score=80.83  Aligned_cols=95  Identities=22%  Similarity=0.308  Sum_probs=64.8

Q ss_pred             cCCeeeeCCCCCCCCCc----hhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHH
Q 038698          169 QGNVFKFPGGGTMFPQG----ADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFA  244 (283)
Q Consensus       169 ~~~~~~Fpgggt~F~~g----a~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A  244 (283)
                      .|-+|.++.+  .|.+.    ++..++.+.+ +  ..+  .+|||+|||+|.++..|+++..   .+.++|+++++++.|
T Consensus       259 ~g~~f~~~~~--~F~q~n~~~~e~l~~~~~~-~--~~~--~~VLDlgcG~G~~sl~la~~~~---~V~gvD~s~~ai~~A  328 (425)
T 2jjq_A          259 DDVDYLIHPN--SFFQTNSYQAVNLVRKVSE-L--VEG--EKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMA  328 (425)
T ss_dssp             TTEEEEECTT--SCCCSBHHHHHHHHHHHHH-H--CCS--SEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHH
T ss_pred             CCEEEEEccc--cccccCHHHHHHHHHHhhc-c--CCC--CEEEEeeccchHHHHHHHHcCC---EEEEEECCHHHHHHH
Confidence            3556666654  46542    2333444444 2  223  6899999999999999998743   567889999988887


Q ss_pred             HHc----CCCeEEEeccccCCCCCCCceeeeeecc
Q 038698          245 LER----GVPAVIGVLGTIHLPYPSRAFDMAQCSR  275 (283)
Q Consensus       245 ~er----g~~a~~~v~da~rLPFpd~SFDlV~cs~  275 (283)
                      ++.    ++.+.+..+++..++..  +||+|++.-
T Consensus       329 ~~n~~~ngl~v~~~~~d~~~~~~~--~fD~Vv~dP  361 (425)
T 2jjq_A          329 RRNVEINNVDAEFEVASDREVSVK--GFDTVIVDP  361 (425)
T ss_dssp             HHHHHHHTCCEEEEECCTTTCCCT--TCSEEEECC
T ss_pred             HHHHHHcCCcEEEEECChHHcCcc--CCCEEEEcC
Confidence            643    55555677787776533  899999864

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.15  E-value=1.8e-06  Score=79.67  Aligned_cols=85  Identities=19%  Similarity=0.070  Sum_probs=56.1

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH--HcCC--CeEEEeccccCCCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL--ERGV--PAVIGVLGTIHLPYPS  265 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~--erg~--~a~~~v~da~rLPFpd  265 (283)
                      .+.|.+.++...  ..+|||||||+|.++..|+++... ..+.+.|+.+. +..+.  +.+.  ...+..+|.. .|+| 
T Consensus       173 ~~~~~~~~~~~~--~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~-~~~~~~~~~~~~~~v~~~~~d~~-~~~p-  246 (348)
T 3lst_A          173 HLILARAGDFPA--TGTVADVGGGRGGFLLTVLREHPG-LQGVLLDRAEV-VARHRLDAPDVAGRWKVVEGDFL-REVP-  246 (348)
T ss_dssp             HHHHHHHSCCCS--SEEEEEETCTTSHHHHHHHHHCTT-EEEEEEECHHH-HTTCCCCCGGGTTSEEEEECCTT-TCCC-
T ss_pred             HHHHHHhCCccC--CceEEEECCccCHHHHHHHHHCCC-CEEEEecCHHH-hhcccccccCCCCCeEEEecCCC-CCCC-
Confidence            445666666533  479999999999999999886332 24566777433 22111  0122  2456666764 4566 


Q ss_pred             Cceeeeeecccccccc
Q 038698          266 RAFDMAQCSRCLIPWT  281 (283)
Q Consensus       266 ~SFDlV~cs~~Li~W~  281 (283)
                       +||+|++..+|-+|.
T Consensus       247 -~~D~v~~~~vlh~~~  261 (348)
T 3lst_A          247 -HADVHVLKRILHNWG  261 (348)
T ss_dssp             -CCSEEEEESCGGGSC
T ss_pred             -CCcEEEEehhccCCC
Confidence             899999999998775

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.14  E-value=1.5e-06  Score=79.49  Aligned_cols=71  Identities=14%  Similarity=0.001  Sum_probs=52.3

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---------CCeEEEeccccC-CCCCCCceeeeee
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---------VPAVIGVLGTIH-LPYPSRAFDMAQC  273 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---------~~a~~~v~da~r-LPFpd~SFDlV~c  273 (283)
                      ..+|||||||+|.++..|+++.. ...+.++|+++.+++.|++.-         ....+...|+.. ++..+++||+|++
T Consensus        91 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           91 PKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            36899999999999999998721 235678899999988887531         234555566544 5666789999998


Q ss_pred             cc
Q 038698          274 SR  275 (283)
Q Consensus       274 s~  275 (283)
                      ..
T Consensus       170 d~  171 (296)
T 1inl_A          170 DS  171 (296)
T ss_dssp             EC
T ss_pred             cC
Confidence            53

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.13  E-value=1.6e-06  Score=80.34  Aligned_cols=82  Identities=12%  Similarity=0.110  Sum_probs=60.4

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCC--
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPY--  263 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPF--  263 (283)
                      ++.+.+.+....+  .+|||+|||+|.++..|+++.. ...+.++|.++.+++.|.++    +....+..++...||.  
T Consensus        15 l~e~l~~L~~~~g--~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l   91 (301)
T 1m6y_A           15 VREVIEFLKPEDE--KIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL   91 (301)
T ss_dssp             HHHHHHHHCCCTT--CEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred             HHHHHHhcCCCCC--CEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHH
Confidence            5566677766544  5899999999999999998732 23577899999999998765    2345566677777762  


Q ss_pred             CC---Cceeeeeec
Q 038698          264 PS---RAFDMAQCS  274 (283)
Q Consensus       264 pd---~SFDlV~cs  274 (283)
                      ++   ++||.|++.
T Consensus        92 ~~~g~~~~D~Vl~D  105 (301)
T 1m6y_A           92 KTLGIEKVDGILMD  105 (301)
T ss_dssp             HHTTCSCEEEEEEE
T ss_pred             HhcCCCCCCEEEEc
Confidence            22   689999864

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.13  E-value=1.6e-06  Score=78.42  Aligned_cols=88  Identities=13%  Similarity=0.090  Sum_probs=59.2

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc------CC---CeEEEeccc
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER------GV---PAVIGVLGT  258 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er------g~---~a~~~v~da  258 (283)
                      .|.+.|..+.-.......+|||||||+|.++..++++. ....+..+|+++++++.|++.      +.   ...+..+|+
T Consensus        60 ~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~  138 (275)
T 1iy9_A           60 VYHEMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDG  138 (275)
T ss_dssp             HHHHHHHHHHHHHSSSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCS
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcH
Confidence            46666654310001234799999999999999998872 123567789999999888753      12   345556665


Q ss_pred             cC-CCCCCCceeeeeeccc
Q 038698          259 IH-LPYPSRAFDMAQCSRC  276 (283)
Q Consensus       259 ~r-LPFpd~SFDlV~cs~~  276 (283)
                      .. |+..+++||+|++...
T Consensus       139 ~~~l~~~~~~fD~Ii~d~~  157 (275)
T 1iy9_A          139 FMHIAKSENQYDVIMVDST  157 (275)
T ss_dssp             HHHHHTCCSCEEEEEESCS
T ss_pred             HHHHhhCCCCeeEEEECCC
Confidence            44 5666789999999643

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.12  E-value=2e-06  Score=78.09  Aligned_cols=72  Identities=11%  Similarity=0.015  Sum_probs=53.0

Q ss_pred             CccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---------CCeEEEeccccC-CCCCCCceeeee
Q 038698          203 SVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---------VPAVIGVLGTIH-LPYPSRAFDMAQ  272 (283)
Q Consensus       203 ~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---------~~a~~~v~da~r-LPFpd~SFDlV~  272 (283)
                      ...+|||||||+|.++..|+++.. ...+.++|+++++++.|+++-         ....+..+|+.. ++..+++||+|+
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            347999999999999999987632 235778899999999988651         224455566544 444578999999


Q ss_pred             ecc
Q 038698          273 CSR  275 (283)
Q Consensus       273 cs~  275 (283)
                      +..
T Consensus       157 ~d~  159 (283)
T 2i7c_A          157 VDS  159 (283)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            854

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.12  E-value=4.9e-06  Score=80.23  Aligned_cols=79  Identities=14%  Similarity=0.014  Sum_probs=57.9

Q ss_pred             HHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCC--CCC
Q 038698          193 LASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLP--YPS  265 (283)
Q Consensus       193 I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLP--Fpd  265 (283)
                      +...+....|  .+|||+|||+|..+..|++.-.....+.++|+++.+++.+.++    |+ .+.+...|+..++  |++
T Consensus       251 ~~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~  328 (450)
T 2yxl_A          251 ASIVLDPKPG--ETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGE  328 (450)
T ss_dssp             HHHHHCCCTT--CEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCS
T ss_pred             HHHhcCCCCc--CEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhcc
Confidence            3445555445  5899999999999999888521112467789999888777644    66 4556667888887  777


Q ss_pred             Cceeeeee
Q 038698          266 RAFDMAQC  273 (283)
Q Consensus       266 ~SFDlV~c  273 (283)
                      ++||+|++
T Consensus       329 ~~fD~Vl~  336 (450)
T 2yxl_A          329 EVADKVLL  336 (450)
T ss_dssp             SCEEEEEE
T ss_pred             CCCCEEEE
Confidence            89999995

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.11  E-value=3e-06  Score=73.92  Aligned_cols=72  Identities=13%  Similarity=0.034  Sum_probs=51.6

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccc----cCCCCCC--Cceeeee
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGT----IHLPYPS--RAFDMAQ  272 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da----~rLPFpd--~SFDlV~  272 (283)
                      .+|||||||+|..+..|++.-.....+.++|+++.+++.|++.    |..  ..+..+++    ..+|+.+  ++||+|+
T Consensus        74 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~  153 (232)
T 3cbg_A           74 KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIF  153 (232)
T ss_dssp             CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEE
T ss_pred             CEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEE
Confidence            5899999999999999988521123567789999888887653    542  44555553    3456666  8999999


Q ss_pred             eccc
Q 038698          273 CSRC  276 (283)
Q Consensus       273 cs~~  276 (283)
                      +...
T Consensus       154 ~d~~  157 (232)
T 3cbg_A          154 IDAD  157 (232)
T ss_dssp             ECSC
T ss_pred             ECCC
Confidence            8643

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.11  E-value=1.7e-06  Score=71.89  Aligned_cols=78  Identities=15%  Similarity=0.153  Sum_probs=47.5

Q ss_pred             HHHHHhhCC-CCCCCccEEeecCCCccHHHHHHhhc-CCe-------eEeeccccChHHHHHHHHHcCC-CeEEE-eccc
Q 038698          190 IDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKR-NVL-------TMSFAPRDNHEAQVQFALERGV-PAVIG-VLGT  258 (283)
Q Consensus       190 id~I~~~l~-~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~-------~~sla~~D~s~a~vq~A~erg~-~a~~~-v~da  258 (283)
                      +.+|.+... +..+  .+|||+|||+|.++..|+++ +..       ...+.++|+++.+       .. .+.+. .++.
T Consensus        10 l~~l~~~~~~~~~~--~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-------~~~~~~~~~~~d~   80 (196)
T 2nyu_A           10 LLEVNERHQILRPG--LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-------PLEGATFLCPADV   80 (196)
T ss_dssp             HHHHHHHHCCCCTT--CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-------CCTTCEEECSCCT
T ss_pred             HHHHHHhcCCCCCC--CEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-------cCCCCeEEEeccC
Confidence            334444444 2333  68999999999999999886 210       0245566766521       11 23344 4555


Q ss_pred             cCCC--------CCCCceeeeeeccc
Q 038698          259 IHLP--------YPSRAFDMAQCSRC  276 (283)
Q Consensus       259 ~rLP--------Fpd~SFDlV~cs~~  276 (283)
                      ..++        +++++||+|+|..+
T Consensus        81 ~~~~~~~~~~~~~~~~~fD~V~~~~~  106 (196)
T 2nyu_A           81 TDPRTSQRILEVLPGRRADVILSDMA  106 (196)
T ss_dssp             TSHHHHHHHHHHSGGGCEEEEEECCC
T ss_pred             CCHHHHHHHHHhcCCCCCcEEEeCCC
Confidence            4443        56789999999654

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.11  E-value=2.5e-06  Score=79.53  Aligned_cols=67  Identities=9%  Similarity=0.015  Sum_probs=51.0

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC---eEEEeccccCCCC----CCCceeeeee
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP---AVIGVLGTIHLPY----PSRAFDMAQC  273 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~---a~~~v~da~rLPF----pd~SFDlV~c  273 (283)
                      .+|||+|||+|.++..|++++.   .+.++|+++.+++.|++.    ++.   ..+..+|+..+..    .+++||+|++
T Consensus       155 ~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~  231 (332)
T 2igt_A          155 LKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT  231 (332)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred             CcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence            5899999999999999998764   567889999998887653    543   4566667555321    1679999998


Q ss_pred             c
Q 038698          274 S  274 (283)
Q Consensus       274 s  274 (283)
                      .
T Consensus       232 d  232 (332)
T 2igt_A          232 D  232 (332)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.11  E-value=1.4e-06  Score=80.94  Aligned_cols=71  Identities=11%  Similarity=0.015  Sum_probs=52.8

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---------CCeEEEeccccC-CCCCCCceeeeee
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---------VPAVIGVLGTIH-LPYPSRAFDMAQC  273 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---------~~a~~~v~da~r-LPFpd~SFDlV~c  273 (283)
                      ..+|||||||+|.++..|+++.. ...+.++|+++++++.|+++-         ....+...|+.. ++..+++||+|++
T Consensus       117 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~  195 (321)
T 2pt6_A          117 PKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  195 (321)
T ss_dssp             CCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence            36899999999999999988621 235778899999999988651         124455566544 4555789999998


Q ss_pred             cc
Q 038698          274 SR  275 (283)
Q Consensus       274 s~  275 (283)
                      ..
T Consensus       196 d~  197 (321)
T 2pt6_A          196 DS  197 (321)
T ss_dssp             EC
T ss_pred             CC
Confidence            64

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.10  E-value=1.8e-06  Score=73.72  Aligned_cols=72  Identities=13%  Similarity=0.053  Sum_probs=50.4

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccC-CC-CC---CCceeeeee
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIH-LP-YP---SRAFDMAQC  273 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~r-LP-Fp---d~SFDlV~c  273 (283)
                      .+|||||||+|.++..|+++......+.++|+++.+++.|+++    +..  ..+..+++.. +| ++   +++||+|++
T Consensus        60 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~  139 (223)
T 3duw_A           60 RNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFI  139 (223)
T ss_dssp             SEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEE
T ss_pred             CEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEE
Confidence            6899999999999999998732123567889999888877643    542  4565666533 22 22   267999997


Q ss_pred             ccc
Q 038698          274 SRC  276 (283)
Q Consensus       274 s~~  276 (283)
                      ...
T Consensus       140 d~~  142 (223)
T 3duw_A          140 DAD  142 (223)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            654

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.10  E-value=6.6e-06  Score=77.19  Aligned_cols=71  Identities=17%  Similarity=0.066  Sum_probs=55.3

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccC-CCC-CCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIH-LPY-PSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~r-LPF-pd~SFDlV~cs~~L  277 (283)
                      .+|||+| |+|.++..|+.++.. ..+.++|+++.+++.|+++    |+ .+.+..+|+.. ||. .+++||+|+++..+
T Consensus       174 ~~VLDlG-G~G~~~~~la~~~~~-~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~  251 (373)
T 2qm3_A          174 KDIFVLG-DDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPE  251 (373)
T ss_dssp             CEEEEES-CTTCHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCS
T ss_pred             CEEEEEC-CCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCC
Confidence            6899999 999999988876431 2567889999999888754    55 45566778777 885 57899999997543

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.09  E-value=1.7e-06  Score=80.36  Aligned_cols=71  Identities=14%  Similarity=0.013  Sum_probs=53.2

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---------CCeEEEeccccC-CCCCCCceeeeee
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---------VPAVIGVLGTIH-LPYPSRAFDMAQC  273 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---------~~a~~~v~da~r-LPFpd~SFDlV~c  273 (283)
                      ..+|||||||+|.++..|+++.. ...+..+|+++++++.|+++-         ....+..+|+.. |+..+++||+|++
T Consensus       109 ~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  187 (314)
T 2b2c_A          109 PKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  187 (314)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence            47899999999999999988632 235778899999999988651         124455566544 5557889999998


Q ss_pred             cc
Q 038698          274 SR  275 (283)
Q Consensus       274 s~  275 (283)
                      ..
T Consensus       188 d~  189 (314)
T 2b2c_A          188 DS  189 (314)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.09  E-value=7.3e-06  Score=78.36  Aligned_cols=83  Identities=16%  Similarity=0.159  Sum_probs=51.9

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcC---CeeEeeccccChHHHHHHHHHcCCC--eEEEeccccCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRN---VLTMSFAPRDNHEAQVQFALERGVP--AVIGVLGTIHL  261 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~---v~~~sla~~D~s~a~vq~A~erg~~--a~~~v~da~rL  261 (283)
                      ..|.+.|.+-.....|  .+|||||||+|.++...++.+   |.+++..  .......+.+.+.|..  +.+...+++.+
T Consensus        69 ~aY~~Ai~~~~~~~~~--k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s--~~~~~a~~~~~~n~~~~~i~~i~~~~~~~  144 (376)
T 4hc4_A           69 DAYRLGILRNWAALRG--KTVLDVGAGTGILSIFCAQAGARRVYAVEAS--AIWQQAREVVRFNGLEDRVHVLPGPVETV  144 (376)
T ss_dssp             HHHHHHHHTTHHHHTT--CEEEEETCTTSHHHHHHHHTTCSEEEEEECS--TTHHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred             HHHHHHHHhCHHhcCC--CEEEEeCCCccHHHHHHHHhCCCEEEEEeCh--HHHHHHHHHHHHcCCCceEEEEeeeeeee
Confidence            6787777654332234  589999999998887666654   3333322  1222222333344553  45556678888


Q ss_pred             CCCCCceeeeeec
Q 038698          262 PYPSRAFDMAQCS  274 (283)
Q Consensus       262 PFpd~SFDlV~cs  274 (283)
                      .+| ..||+|+|.
T Consensus       145 ~lp-e~~DvivsE  156 (376)
T 4hc4_A          145 ELP-EQVDAIVSE  156 (376)
T ss_dssp             CCS-SCEEEEECC
T ss_pred             cCC-ccccEEEee
Confidence            888 679999983

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.08  E-value=1.8e-06  Score=73.87  Aligned_cols=76  Identities=11%  Similarity=0.072  Sum_probs=48.3

Q ss_pred             HHHHHHhhCCC-CCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCC---
Q 038698          189 YIDELASVIPI-KDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYP---  264 (283)
Q Consensus       189 Yid~I~~~l~~-~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFp---  264 (283)
                      .+.+|.+...+ ..|  .+|||+|||+|.++..|++++.   .+.++|+++.+      .-..+.+..+|+..++..   
T Consensus        12 KL~ei~~~~~~~~~g--~~VLDlG~G~G~~s~~la~~~~---~V~gvD~~~~~------~~~~v~~~~~D~~~~~~~~~~   80 (191)
T 3dou_A           12 KLEFLLDRYRVVRKG--DAVIEIGSSPGGWTQVLNSLAR---KIISIDLQEME------EIAGVRFIRCDIFKETIFDDI   80 (191)
T ss_dssp             HHHHHHHHHCCSCTT--CEEEEESCTTCHHHHHHTTTCS---EEEEEESSCCC------CCTTCEEEECCTTSSSHHHHH
T ss_pred             HHHHHHHHcCCCCCC--CEEEEEeecCCHHHHHHHHcCC---cEEEEeccccc------cCCCeEEEEccccCHHHHHHH
Confidence            35555555443 334  6899999999999999998732   34455655421      111345556677666531   


Q ss_pred             --------CCceeeeeecc
Q 038698          265 --------SRAFDMAQCSR  275 (283)
Q Consensus       265 --------d~SFDlV~cs~  275 (283)
                              .++||+|+|..
T Consensus        81 ~~~~~~~~~~~~D~Vlsd~   99 (191)
T 3dou_A           81 DRALREEGIEKVDDVVSDA   99 (191)
T ss_dssp             HHHHHHHTCSSEEEEEECC
T ss_pred             HHHhhcccCCcceEEecCC
Confidence                    14999999964

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.08  E-value=4.3e-06  Score=76.56  Aligned_cols=68  Identities=19%  Similarity=0.148  Sum_probs=53.9

Q ss_pred             CCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCCCceeeeeec
Q 038698          202 GSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPSRAFDMAQCS  274 (283)
Q Consensus       202 g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd~SFDlV~cs  274 (283)
                      +.+.+|||||||+|-|+..++ -   ...+.+.|+++.+++++.+.    |.+..+.+.|....|+++ +||+|+..
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~---~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~-~~DvvLll  175 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-G---IASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAE-AGDLALIF  175 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-T---CSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCC-BCSEEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc-c---CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCC-CcchHHHH
Confidence            346799999999999998776 2   22457789999998887654    666777888888888776 99999887

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.07  E-value=1.4e-06  Score=78.77  Aligned_cols=84  Identities=13%  Similarity=0.135  Sum_probs=57.5

Q ss_pred             HHHHHHHh--hCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---------------CC
Q 038698          188 AYIDELAS--VIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---------------VP  250 (283)
Q Consensus       188 ~Yid~I~~--~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---------------~~  250 (283)
                      .|.+.|..  ++...  ...+|||||||+|.++..|++++  ...+.++|+++.+++.|++.-               ..
T Consensus        60 ~y~e~l~~~~l~~~~--~~~~VLdiG~G~G~~~~~l~~~~--~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~  135 (281)
T 1mjf_A           60 SYHEPLVHPAMLAHP--KPKRVLVIGGGDGGTVREVLQHD--VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEK  135 (281)
T ss_dssp             HHHHHHHHHHHHHSS--CCCEEEEEECTTSHHHHHHTTSC--CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSS
T ss_pred             HHHHHHHHHHHhhCC--CCCeEEEEcCCcCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCc
Confidence            46666554  22221  23689999999999999999873  335778899999998887641               12


Q ss_pred             eEEEeccccC-CCCCCCceeeeeeccc
Q 038698          251 AVIGVLGTIH-LPYPSRAFDMAQCSRC  276 (283)
Q Consensus       251 a~~~v~da~r-LPFpd~SFDlV~cs~~  276 (283)
                      ..+...|+.. ++. +++||+|++...
T Consensus       136 v~~~~~D~~~~l~~-~~~fD~Ii~d~~  161 (281)
T 1mjf_A          136 AKLTIGDGFEFIKN-NRGFDVIIADST  161 (281)
T ss_dssp             EEEEESCHHHHHHH-CCCEEEEEEECC
T ss_pred             EEEEECchHHHhcc-cCCeeEEEECCC
Confidence            3455556433 344 789999998654

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.06  E-value=1.8e-05  Score=73.46  Aligned_cols=95  Identities=7%  Similarity=0.004  Sum_probs=63.5

Q ss_pred             cCCeeeeCCCCCCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-
Q 038698          169 QGNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-  247 (283)
Q Consensus       169 ~~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-  247 (283)
                      .|-+|.+.-+.+.|......-...+.+.+.  .|  .+|||+|||+|.++.. ++.   +..+.++|+++.+++.|++. 
T Consensus       165 ~g~~f~~d~~~~~~~~~~~~er~~i~~~~~--~~--~~VLDlg~G~G~~~l~-a~~---~~~V~~vD~s~~ai~~a~~n~  236 (336)
T 2yx1_A          165 NGYRLWVDIAKVYFSPRLGGERARIMKKVS--LN--DVVVDMFAGVGPFSIA-CKN---AKKIYAIDINPHAIELLKKNI  236 (336)
T ss_dssp             TTEEEEEETTTSCCCGGGHHHHHHHHHHCC--TT--CEEEETTCTTSHHHHH-TTT---SSEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEEehHHhccCCccHHHHHHHHHhcC--CC--CEEEEccCccCHHHHh-ccC---CCEEEEEECCHHHHHHHHHHH
Confidence            455566655555554432222224545543  23  6899999999999988 763   23567889999888877643 


Q ss_pred             ---CC--CeEEEeccccCCCCCCCceeeeeec
Q 038698          248 ---GV--PAVIGVLGTIHLPYPSRAFDMAQCS  274 (283)
Q Consensus       248 ---g~--~a~~~v~da~rLPFpd~SFDlV~cs  274 (283)
                         ++  ...+..+|+..++   ++||+|++.
T Consensus       237 ~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~d  265 (336)
T 2yx1_A          237 KLNKLEHKIIPILSDVREVD---VKGNRVIMN  265 (336)
T ss_dssp             HHTTCTTTEEEEESCGGGCC---CCEEEEEEC
T ss_pred             HHcCCCCcEEEEECChHHhc---CCCcEEEEC
Confidence               44  3566677877765   899999985

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.05  E-value=1.9e-06  Score=76.40  Aligned_cols=71  Identities=10%  Similarity=-0.005  Sum_probs=49.7

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccC-CCC------CCCceeee
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIH-LPY------PSRAFDMA  271 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~r-LPF------pd~SFDlV  271 (283)
                      ++|||||||+|..+..|++.-.....+.++|+++.+++.|+++    |+  .+.+..+++.. ||.      ++++||+|
T Consensus        81 ~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V  160 (247)
T 1sui_A           81 KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFI  160 (247)
T ss_dssp             CEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEE
T ss_pred             CEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEE
Confidence            6899999999999999887521123567788888888877643    54  24455556533 453      26899999


Q ss_pred             eecc
Q 038698          272 QCSR  275 (283)
Q Consensus       272 ~cs~  275 (283)
                      ++..
T Consensus       161 ~~d~  164 (247)
T 1sui_A          161 FVDA  164 (247)
T ss_dssp             EECS
T ss_pred             EEcC
Confidence            9864

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.05  E-value=2.3e-06  Score=73.08  Aligned_cols=72  Identities=11%  Similarity=-0.008  Sum_probs=48.7

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCC-C-CC--C--Cceeeee
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHL-P-YP--S--RAFDMAQ  272 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rL-P-Fp--d--~SFDlV~  272 (283)
                      .+|||||||+|.++..|++.......+.++|+++.+++.|+++    |.  ...+..+++... + ++  .  ++||+|+
T Consensus        71 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~  150 (229)
T 2avd_A           71 KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAV  150 (229)
T ss_dssp             CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEE
T ss_pred             CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEE
Confidence            6899999999999999988521123567778888888877653    44  345555554322 1 22  1  7899999


Q ss_pred             eccc
Q 038698          273 CSRC  276 (283)
Q Consensus       273 cs~~  276 (283)
                      +...
T Consensus       151 ~d~~  154 (229)
T 2avd_A          151 VDAD  154 (229)
T ss_dssp             ECSC
T ss_pred             ECCC
Confidence            8643

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.04  E-value=3.7e-06  Score=75.94  Aligned_cols=66  Identities=9%  Similarity=-0.112  Sum_probs=50.2

Q ss_pred             CccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---------CCeEEEeccccCCCCCCCceeeeee
Q 038698          203 SVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---------VPAVIGVLGTIHLPYPSRAFDMAQC  273 (283)
Q Consensus       203 ~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---------~~a~~~v~da~rLPFpd~SFDlV~c  273 (283)
                      ..++|||||||+|.++..++++ .  ..+..+|+++++++.|++.-         ....+..+|+...+   ++||+|++
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~  145 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFC  145 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEE
Confidence            3479999999999999999887 3  36788899999988886531         12445556665544   89999998


Q ss_pred             c
Q 038698          274 S  274 (283)
Q Consensus       274 s  274 (283)
                      .
T Consensus       146 d  146 (262)
T 2cmg_A          146 L  146 (262)
T ss_dssp             S
T ss_pred             C
Confidence            6

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.04  E-value=2.4e-06  Score=83.82  Aligned_cols=79  Identities=16%  Similarity=0.092  Sum_probs=57.1

Q ss_pred             HHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCC-CCCCc
Q 038698          193 LASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLP-YPSRA  267 (283)
Q Consensus       193 I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLP-Fpd~S  267 (283)
                      +..++....|  .+|||+|||+|..+..|+++-.....+.++|+++.+++.+.++    |+.+.+..+|+..++ +.+++
T Consensus        93 ~a~~L~~~~g--~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~  170 (464)
T 3m6w_A           93 VGVLLDPKPG--ERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTY  170 (464)
T ss_dssp             HHHHHCCCTT--CEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSC
T ss_pred             HHHhcCcCCC--CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhcccc
Confidence            3445555445  6899999999999999887522222467789999988877543    666556666777776 56789


Q ss_pred             eeeeee
Q 038698          268 FDMAQC  273 (283)
Q Consensus       268 FDlV~c  273 (283)
                      ||+|++
T Consensus       171 FD~Il~  176 (464)
T 3m6w_A          171 FHRVLL  176 (464)
T ss_dssp             EEEEEE
T ss_pred             CCEEEE
Confidence            999994

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.03  E-value=3.4e-06  Score=80.69  Aligned_cols=79  Identities=13%  Similarity=0.077  Sum_probs=57.2

Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCC--CCC
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLP--YPS  265 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLP--Fpd  265 (283)
                      .+..++....|  .+|||+|||+|..+..|++.... ..+.++|+++.+++.+.++    |+.+.+..+|+..++  |++
T Consensus       237 ~~~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~  313 (429)
T 1sqg_A          237 GCMTWLAPQNG--EHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGE  313 (429)
T ss_dssp             THHHHHCCCTT--CEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTT
T ss_pred             HHHHHcCCCCc--CeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhccc
Confidence            34445555444  58999999999999999886322 3466777777776665543    666666677888887  788


Q ss_pred             Cceeeeee
Q 038698          266 RAFDMAQC  273 (283)
Q Consensus       266 ~SFDlV~c  273 (283)
                      ++||+|++
T Consensus       314 ~~fD~Vl~  321 (429)
T 1sqg_A          314 QQFDRILL  321 (429)
T ss_dssp             CCEEEEEE
T ss_pred             CCCCEEEE
Confidence            99999995

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.03  E-value=6.1e-06  Score=76.26  Aligned_cols=73  Identities=12%  Similarity=0.115  Sum_probs=54.4

Q ss_pred             ccEEeecCCCccHHHHHHhhcCC----eeEeeccccChHHHHHHHHH----cCCCeEEEeccccCCCCCCCceeeeeecc
Q 038698          204 VRTALDTGCGVASWGAYLLKRNV----LTMSFAPRDNHEAQVQFALE----RGVPAVIGVLGTIHLPYPSRAFDMAQCSR  275 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v----~~~sla~~D~s~a~vq~A~e----rg~~a~~~v~da~rLPFpd~SFDlV~cs~  275 (283)
                      ..+|||+|||+|.++..++++..    ....+.++|+++.+++.|+.    .|+.+.+..+++.. +.+++.||+|+++-
T Consensus       131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~-~~~~~~fD~Ii~NP  209 (344)
T 2f8l_A          131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVISDL  209 (344)
T ss_dssp             EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEEEEC
T ss_pred             CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCC-ccccCCccEEEECC
Confidence            47899999999999988776421    12467899999998888764    36666666667554 45678999999986


Q ss_pred             cc
Q 038698          276 CL  277 (283)
Q Consensus       276 ~L  277 (283)
                      -+
T Consensus       210 Pf  211 (344)
T 2f8l_A          210 PV  211 (344)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.02  E-value=7.8e-06  Score=77.76  Aligned_cols=83  Identities=20%  Similarity=0.222  Sum_probs=59.5

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc--CC-----------------------------------eeEee
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR--NV-----------------------------------LTMSF  231 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r--~v-----------------------------------~~~sl  231 (283)
                      ....|..+.....+  .+|||.+||+|+|+..++..  ++                                   ....+
T Consensus       183 lAa~ll~~~~~~~~--~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V  260 (385)
T 3ldu_A          183 LAAGLIYLTPWKAG--RVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI  260 (385)
T ss_dssp             HHHHHHHTSCCCTT--SCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred             HHHHHHHhhCCCCC--CeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence            44556666665444  68999999999987665543  11                                   01357


Q ss_pred             ccccChHHHHHHHHHc----CCC--eEEEeccccCCCCCCCceeeeeec
Q 038698          232 APRDNHEAQVQFALER----GVP--AVIGVLGTIHLPYPSRAFDMAQCS  274 (283)
Q Consensus       232 a~~D~s~a~vq~A~er----g~~--a~~~v~da~rLPFpd~SFDlV~cs  274 (283)
                      .+.|+++.+++.|++.    |+.  ..+...|+..++.+ .+||+|+|+
T Consensus       261 ~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~N  308 (385)
T 3ldu_A          261 YGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITN  308 (385)
T ss_dssp             EEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEEC
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEEC
Confidence            7899999999888643    653  56777888888876 499999995

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.02  E-value=2.1e-06  Score=80.14  Aligned_cols=81  Identities=14%  Similarity=0.149  Sum_probs=54.9

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSR  266 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~  266 (283)
                      ...++.|.+++....+  .+|||+|||+|.++..++++......+.++|+++.+++.|    ....+..+|....+ +++
T Consensus        25 ~~l~~~~~~~~~~~~~--~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----~~~~~~~~D~~~~~-~~~   97 (421)
T 2ih2_A           25 PEVVDFMVSLAEAPRG--GRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLLWE-PGE   97 (421)
T ss_dssp             HHHHHHHHHHCCCCTT--CEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGGCC-CSS
T ss_pred             HHHHHHHHHhhccCCC--CEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----CCCcEEeCChhhcC-ccC
Confidence            3446777788764333  4899999999999999887511112456777777665555    23455566766654 357


Q ss_pred             ceeeeeec
Q 038698          267 AFDMAQCS  274 (283)
Q Consensus       267 SFDlV~cs  274 (283)
                      .||+|+|+
T Consensus        98 ~fD~Ii~N  105 (421)
T 2ih2_A           98 AFDLILGN  105 (421)
T ss_dssp             CEEEEEEC
T ss_pred             CCCEEEEC
Confidence            99999995

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.02  E-value=6.7e-06  Score=78.60  Aligned_cols=82  Identities=12%  Similarity=0.159  Sum_probs=58.1

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc--CC-----------------------------------eeEeec
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR--NV-----------------------------------LTMSFA  232 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r--~v-----------------------------------~~~sla  232 (283)
                      ...|..+.....+  ..+||.+||+|+++...+..  ++                                   ....+.
T Consensus       190 Aa~ll~l~~~~~~--~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~  267 (393)
T 3k0b_A          190 AAALVLLTSWHPD--RPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII  267 (393)
T ss_dssp             HHHHHHHSCCCTT--SCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred             HHHHHHHhCCCCC--CeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence            4455566655433  68999999999997554432  21                                   012467


Q ss_pred             cccChHHHHHHHHHc----CCC--eEEEeccccCCCCCCCceeeeeec
Q 038698          233 PRDNHEAQVQFALER----GVP--AVIGVLGTIHLPYPSRAFDMAQCS  274 (283)
Q Consensus       233 ~~D~s~a~vq~A~er----g~~--a~~~v~da~rLPFpd~SFDlV~cs  274 (283)
                      ++|+++.+++.|++.    |+.  +.+...|+..+++++ +||+|+|+
T Consensus       268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~-~fD~Iv~N  314 (393)
T 3k0b_A          268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTED-EYGVVVAN  314 (393)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCC-CSCEEEEC
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCC-CCCEEEEC
Confidence            889999998887643    553  567778999998865 99999997

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.00  E-value=3e-06  Score=78.35  Aligned_cols=71  Identities=13%  Similarity=0.057  Sum_probs=51.5

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeecccccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~W~  281 (283)
                      .+|||||||+|.++..|+++... +.+.++|+ +.+++.|.+. ....+...|... |++  +||+|+++.+|-+|.
T Consensus       195 ~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~  265 (358)
T 1zg3_A          195 ESLVDVGGGTGGVTKLIHEIFPH-LKCTVFDQ-PQVVGNLTGN-ENLNFVGGDMFK-SIP--SADAVLLKWVLHDWN  265 (358)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTT-SEEEEEEC-HHHHSSCCCC-SSEEEEECCTTT-CCC--CCSEEEEESCGGGSC
T ss_pred             CEEEEECCCcCHHHHHHHHHCCC-CeEEEecc-HHHHhhcccC-CCcEEEeCccCC-CCC--CceEEEEcccccCCC
Confidence            68999999999999999986321 23556788 5666655432 224555667666 777  399999999997774

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=97.99  E-value=1.3e-05  Score=76.77  Aligned_cols=67  Identities=10%  Similarity=0.012  Sum_probs=50.1

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCC-CCCCCceeeeeec
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHL-PYPSRAFDMAQCS  274 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rL-PFpd~SFDlV~cs  274 (283)
                      .+|||+|||+|.++..+++.+..   +.++|+++.+++.|.+.    ++...+..+|+..+ +...+.||+|++.
T Consensus       216 ~~VLDlg~GtG~~sl~~a~~ga~---V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~d  287 (393)
T 4dmg_A          216 ERVLDVYSYVGGFALRAARKGAY---ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLD  287 (393)
T ss_dssp             CEEEEESCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEEC
T ss_pred             CeEEEcccchhHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEEC
Confidence            68999999999999999987643   67889999998887643    66544556675543 3324449999985

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.99  E-value=4e-06  Score=75.55  Aligned_cols=83  Identities=12%  Similarity=0.051  Sum_probs=59.2

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC---CeEEEeccccCCCCC
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV---PAVIGVLGTIHLPYP  264 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~---~a~~~v~da~rLPFp  264 (283)
                      ..++.|.+.+....+  .+|||||||+|.++. |.. ... ..+.++|+++.+++.+.++-.   ...+..+|+..++|+
T Consensus         8 ~i~~~iv~~~~~~~~--~~VLEIG~G~G~lt~-l~~-~~~-~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~   82 (252)
T 1qyr_A            8 FVIDSIVSAINPQKG--QAMVEIGPGLAALTE-PVG-ERL-DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFG   82 (252)
T ss_dssp             HHHHHHHHHHCCCTT--CCEEEECCTTTTTHH-HHH-TTC-SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHH
T ss_pred             HHHHHHHHhcCCCCc--CEEEEECCCCcHHHH-hhh-CCC-CeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHH
Confidence            356778888776544  589999999999999 654 221 125678999999998887532   355667788898886


Q ss_pred             CC-----ceeeeeecc
Q 038698          265 SR-----AFDMAQCSR  275 (283)
Q Consensus       265 d~-----SFDlV~cs~  275 (283)
                      +.     ..|.|+++.
T Consensus        83 ~~~~~~~~~~~vvsNl   98 (252)
T 1qyr_A           83 ELAEKMGQPLRVFGNL   98 (252)
T ss_dssp             HHHHHHTSCEEEEEEC
T ss_pred             HhhcccCCceEEEECC
Confidence            53     356777764

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.99  E-value=6.9e-07  Score=86.94  Aligned_cols=69  Identities=10%  Similarity=-0.051  Sum_probs=46.8

Q ss_pred             ccEEeecCCC------ccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCC------CCceeee
Q 038698          204 VRTALDTGCG------VASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYP------SRAFDMA  271 (283)
Q Consensus       204 ~r~VLDVGCG------tGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFp------d~SFDlV  271 (283)
                      ..+|||||||      +|..+..|+++-.....+.++|+++.+.    .....+.+.++|+..+||.      +++||+|
T Consensus       217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~----~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlV  292 (419)
T 3sso_A          217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH----VDELRIRTIQGDQNDAEFLDRIARRYGPFDIV  292 (419)
T ss_dssp             CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG----GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred             CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh----hcCCCcEEEEecccccchhhhhhcccCCccEE
Confidence            3689999999      6655555554311112455666666652    1234567778899999998      8999999


Q ss_pred             eeccc
Q 038698          272 QCSRC  276 (283)
Q Consensus       272 ~cs~~  276 (283)
                      +|..+
T Consensus       293 isdgs  297 (419)
T 3sso_A          293 IDDGS  297 (419)
T ss_dssp             EECSC
T ss_pred             EECCc
Confidence            99754

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.98  E-value=1.2e-06  Score=81.10  Aligned_cols=94  Identities=9%  Similarity=0.071  Sum_probs=59.3

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccH--HHHHHhhcCCeeEeeccccChHHHHHHHHHc--CC---CeEEEecccc
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVAS--WGAYLLKRNVLTMSFAPRDNHEAQVQFALER--GV---PAVIGVLGTI  259 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGs--faa~L~~r~v~~~sla~~D~s~a~vq~A~er--g~---~a~~~v~da~  259 (283)
                      .+|+.+..+.+.... ++++|||||||+++  +...++++......+.++|.++.|++.|+++  +.   ...+..+|..
T Consensus        63 r~fl~rav~~l~~~~-g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~  141 (277)
T 3giw_A           63 RDWMNRAVAHLAKEA-GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADML  141 (277)
T ss_dssp             HHHHHHHHHHHHHTS-CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTT
T ss_pred             HHHHHHHHHHhcccc-CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEeccc
Confidence            455666666665322 36899999999733  3333333211123577889999999988765  21   2456677877


Q ss_pred             CCC------CCCCcee-----eeeeccccccccc
Q 038698          260 HLP------YPSRAFD-----MAQCSRCLIPWTS  282 (283)
Q Consensus       260 rLP------Fpd~SFD-----lV~cs~~Li~W~~  282 (283)
                      .++      ..+++||     .|+++.+| +|..
T Consensus       142 ~~~~~l~~~~~~~~~D~~~p~av~~~avL-H~l~  174 (277)
T 3giw_A          142 DPASILDAPELRDTLDLTRPVALTVIAIV-HFVL  174 (277)
T ss_dssp             CHHHHHTCHHHHTTCCTTSCCEEEEESCG-GGSC
T ss_pred             ChhhhhcccccccccCcCCcchHHhhhhH-hcCC
Confidence            752      2256777     47777777 8763

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=97.97  E-value=1.1e-05  Score=76.13  Aligned_cols=68  Identities=15%  Similarity=0.040  Sum_probs=50.7

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCCCC----CCCceeeeeec
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHLPY----PSRAFDMAQCS  274 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rLPF----pd~SFDlV~cs  274 (283)
                      .+|||+|||+|.++..|++.+.  ..+.++|+++.+++.|.+.    ++  ...+..+++..+..    .+++||+|++.
T Consensus       219 ~~VLDl~~G~G~~~~~la~~g~--~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d  296 (396)
T 2as0_A          219 DRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD  296 (396)
T ss_dssp             CEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CeEEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence            6899999999999999998742  2467889999888877643    55  35566667655422    36899999984

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=97.96  E-value=7.7e-06  Score=80.24  Aligned_cols=69  Identities=10%  Similarity=0.077  Sum_probs=52.7

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCC-CCCceeeeee
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPY-PSRAFDMAQC  273 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPF-pd~SFDlV~c  273 (283)
                      .+|||+|||+|..+..|+++--....+.++|+++.+++.+.++    |+. +.+...|+..++. .+++||+|++
T Consensus       119 ~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~  193 (479)
T 2frx_A          119 QRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILL  193 (479)
T ss_dssp             SEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred             CEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEE
Confidence            6899999999999999888521122467889999988877543    664 5566678888775 6789999997

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=97.95  E-value=7.4e-06  Score=77.33  Aligned_cols=68  Identities=12%  Similarity=0.086  Sum_probs=50.8

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC---CeEEEeccccCCCC----CCCceeeeee
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV---PAVIGVLGTIHLPY----PSRAFDMAQC  273 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~---~a~~~v~da~rLPF----pd~SFDlV~c  273 (283)
                      .+|||+|||+|.++..|++++.  ..+.++|+++.+++.|.+.    ++   ...+..+|+..+.-    .+++||+|++
T Consensus       222 ~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~  299 (396)
T 3c0k_A          222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM  299 (396)
T ss_dssp             CEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence            5899999999999999998752  2567889999988877643    55   35566667554321    2578999998


Q ss_pred             c
Q 038698          274 S  274 (283)
Q Consensus       274 s  274 (283)
                      .
T Consensus       300 d  300 (396)
T 3c0k_A          300 D  300 (396)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.95  E-value=2.2e-06  Score=77.42  Aligned_cols=81  Identities=12%  Similarity=0.100  Sum_probs=55.9

Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChH-------HHHHHHHHc----CC-C-eEEEeccc
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHE-------AQVQFALER----GV-P-AVIGVLGT  258 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~-------a~vq~A~er----g~-~-a~~~v~da  258 (283)
                      .|.+.+....+  .+|||+|||+|.++..|++++.   .+.++|+++       .+++.|.+.    ++ . ..+..+++
T Consensus        74 ~l~~a~~~~~~--~~VLDlgcG~G~~a~~lA~~g~---~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~  148 (258)
T 2r6z_A           74 LIAKAVNHTAH--PTVWDATAGLGRDSFVLASLGL---TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNA  148 (258)
T ss_dssp             HHHHHTTGGGC--CCEEETTCTTCHHHHHHHHTTC---CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCH
T ss_pred             HHHHHhCcCCc--CeEEEeeCccCHHHHHHHHhCC---EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCH
Confidence            44455543223  5899999999999999998743   456788888       777777542    22 2 55666676


Q ss_pred             cC-CC-CCC--Cceeeeeecccc
Q 038698          259 IH-LP-YPS--RAFDMAQCSRCL  277 (283)
Q Consensus       259 ~r-LP-Fpd--~SFDlV~cs~~L  277 (283)
                      .. |+ +++  ++||+|++.-.+
T Consensus       149 ~~~l~~~~~~~~~fD~V~~dP~~  171 (258)
T 2r6z_A          149 AEQMPALVKTQGKPDIVYLDPMY  171 (258)
T ss_dssp             HHHHHHHHHHHCCCSEEEECCCC
T ss_pred             HHHHHhhhccCCCccEEEECCCC
Confidence            55 34 566  899999996543

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.94  E-value=2.9e-06  Score=78.38  Aligned_cols=70  Identities=17%  Similarity=0.253  Sum_probs=41.4

Q ss_pred             cEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHH-HH-cCCC-eEEEec-cccCCCCCCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFA-LE-RGVP-AVIGVL-GTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A-~e-rg~~-a~~~v~-da~rLPFpd~SFDlV~cs~~L  277 (283)
                      .+|||||||+|.++.+|+++ .|+++++.... +..++..+ .+ .+.+ +.+... ++..+|  +++||+|+|..+.
T Consensus        84 ~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd~~~  158 (305)
T 2p41_A           84 GKVVDLGCGRGGWSYYCGGLKNVREVKGLTKG-GPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTLLCDIGE  158 (305)
T ss_dssp             EEEEEETCTTSHHHHHHHTSTTEEEEEEECCC-STTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEEEECCCC
T ss_pred             CEEEEEcCCCCHHHHHHHhcCCEEEEeccccC-chhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEEEECCcc
Confidence            69999999999999999987 34455541000 11111111 11 1222 345444 555554  6799999996554

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=97.93  E-value=9.6e-07  Score=78.16  Aligned_cols=72  Identities=13%  Similarity=-0.022  Sum_probs=44.3

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH----HcCC--CeEEEeccccC-CCCC-----CCceeeee
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL----ERGV--PAVIGVLGTIH-LPYP-----SRAFDMAQ  272 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~----erg~--~a~~~v~da~r-LPFp-----d~SFDlV~  272 (283)
                      ++|||||||+|..+..|++.-.....+.++|+++.+++.|+    +.|+  .+.+..+++.. +|..     +++||+|+
T Consensus        62 ~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~  141 (242)
T 3r3h_A           62 KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIF  141 (242)
T ss_dssp             SEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEE
T ss_pred             CEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEE
Confidence            68999999999999999874111123344454444433332    2354  35566667544 3432     68999999


Q ss_pred             eccc
Q 038698          273 CSRC  276 (283)
Q Consensus       273 cs~~  276 (283)
                      +...
T Consensus       142 ~d~~  145 (242)
T 3r3h_A          142 IDAD  145 (242)
T ss_dssp             EESC
T ss_pred             EcCC
Confidence            8643

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=97.91  E-value=4.4e-05  Score=70.15  Aligned_cols=99  Identities=13%  Similarity=0.085  Sum_probs=69.9

Q ss_pred             cCCeeeeCCCCCCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-
Q 038698          169 QGNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-  247 (283)
Q Consensus       169 ~~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-  247 (283)
                      .|=+|.|.-.-++|..+-..-..+|.+++..  |  .+|||+|||+|.|+..++.++.  ..+.++|+++.+++.+.+. 
T Consensus        95 ~G~~~~~D~~k~~f~~~~~~er~ri~~~~~~--g--~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~  168 (278)
T 3k6r_A           95 NGIKYKLDVAKIMFSPANVKERVRMAKVAKP--D--ELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENI  168 (278)
T ss_dssp             TTEEEEEETTTSCCCGGGHHHHHHHHHHCCT--T--CEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHH
T ss_pred             CCEEEEEeccceEEcCCcHHHHHHHHHhcCC--C--CEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHH
Confidence            3455666555677776655556677777753  5  6999999999999988887753  2456788888887776532 


Q ss_pred             ---CCC--eEEEeccccCCCCCCCceeeeeec
Q 038698          248 ---GVP--AVIGVLGTIHLPYPSRAFDMAQCS  274 (283)
Q Consensus       248 ---g~~--a~~~v~da~rLPFpd~SFDlV~cs  274 (283)
                         ++.  ..+..+|+..++. .+.||.|+..
T Consensus       169 ~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~  199 (278)
T 3k6r_A          169 HLNKVEDRMSAYNMDNRDFPG-ENIADRILMG  199 (278)
T ss_dssp             HHTTCTTTEEEECSCTTTCCC-CSCEEEEEEC
T ss_pred             HHcCCCCcEEEEeCcHHHhcc-ccCCCEEEEC
Confidence               553  4455678777764 5889999875

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=97.88  E-value=1.5e-05  Score=75.52  Aligned_cols=68  Identities=13%  Similarity=0.155  Sum_probs=48.9

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC---CeEEEeccccC-CCC---CCCceeeeee
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV---PAVIGVLGTIH-LPY---PSRAFDMAQC  273 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~---~a~~~v~da~r-LPF---pd~SFDlV~c  273 (283)
                      .+|||+|||+|.++..|++++.  ..+.++|+++.+++.|++.    ++   .+.+..+|+.. |+.   ...+||+|++
T Consensus       214 ~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~  291 (385)
T 2b78_A          214 KTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII  291 (385)
T ss_dssp             CEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEE
Confidence            5899999999999999998653  2456778888887776542    54   35566667544 332   3568999998


Q ss_pred             c
Q 038698          274 S  274 (283)
Q Consensus       274 s  274 (283)
                      .
T Consensus       292 D  292 (385)
T 2b78_A          292 D  292 (385)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=97.85  E-value=1.3e-05  Score=75.36  Aligned_cols=67  Identities=16%  Similarity=0.111  Sum_probs=51.0

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCC----CCCceeeeeec
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPY----PSRAFDMAQCS  274 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPF----pd~SFDlV~cs  274 (283)
                      .+|||+|||+|.++..|++.   +..+.++|+++.+++.|.+.    ++. ..+..+++..+..    .+++||+|++.
T Consensus       211 ~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d  286 (382)
T 1wxx_A          211 ERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  286 (382)
T ss_dssp             EEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence            68999999999999999886   44678889999998887653    553 5566667554422    26899999984

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=97.85  E-value=1.2e-05  Score=70.61  Aligned_cols=71  Identities=10%  Similarity=0.006  Sum_probs=49.5

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccC-CC-C-----CCCceeee
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIH-LP-Y-----PSRAFDMA  271 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~r-LP-F-----pd~SFDlV  271 (283)
                      ++|||||||+|..+..|++.-.....+.++|+++.+++.|++.    |+.  ..+..+++.. +| +     ++++||+|
T Consensus        72 ~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I  151 (237)
T 3c3y_A           72 KKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFG  151 (237)
T ss_dssp             CEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEE
T ss_pred             CEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEE
Confidence            6899999999999999887521123567788999888877643    553  4455555433 33 2     36899999


Q ss_pred             eecc
Q 038698          272 QCSR  275 (283)
Q Consensus       272 ~cs~  275 (283)
                      ++..
T Consensus       152 ~~d~  155 (237)
T 3c3y_A          152 FVDA  155 (237)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            9753

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=97.84  E-value=2.9e-05  Score=74.13  Aligned_cols=83  Identities=10%  Similarity=0.112  Sum_probs=58.3

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhh--cCC-----------------------------------eeEee
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLK--RNV-----------------------------------LTMSF  231 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~--r~v-----------------------------------~~~sl  231 (283)
                      ....|..+.....+  ..+||.+||+|+++...+.  .++                                   ....+
T Consensus       182 LAaall~l~~~~~~--~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v  259 (384)
T 3ldg_A          182 MAAAIILLSNWFPD--KPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI  259 (384)
T ss_dssp             HHHHHHHHTTCCTT--SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHhCCCCC--CeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence            34455556555433  6899999999998755443  221                                   01247


Q ss_pred             ccccChHHHHHHHHHc----CCC--eEEEeccccCCCCCCCceeeeeec
Q 038698          232 APRDNHEAQVQFALER----GVP--AVIGVLGTIHLPYPSRAFDMAQCS  274 (283)
Q Consensus       232 a~~D~s~a~vq~A~er----g~~--a~~~v~da~rLPFpd~SFDlV~cs  274 (283)
                      .++|+++.+++.|++.    |+.  ..+...|+..++.++ +||+|+|+
T Consensus       260 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~-~fD~Iv~N  307 (384)
T 3ldg_A          260 SGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNK-INGVLISN  307 (384)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCC-CSCEEEEC
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccC-CcCEEEEC
Confidence            7889999998887643    653  567778999998875 99999986

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.81  E-value=2.9e-05  Score=79.41  Aligned_cols=68  Identities=13%  Similarity=0.025  Sum_probs=52.7

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC---eEEEeccccC-CCCCCCceeeeeec
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP---AVIGVLGTIH-LPYPSRAFDMAQCS  274 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~---a~~~v~da~r-LPFpd~SFDlV~cs  274 (283)
                      .+|||+|||+|.++..++..+..  .+.++|+++.+++.|.+.    |+.   ..+..+|+.. |+..+++||+|++.
T Consensus       541 ~~VLDlg~GtG~~sl~aa~~ga~--~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D  616 (703)
T 3v97_A          541 KDFLNLFSYTGSATVHAGLGGAR--STTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID  616 (703)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred             CcEEEeeechhHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence            58999999999999998886542  467789999998887653    543   5566677554 66778999999984

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=97.79  E-value=3.1e-05  Score=71.79  Aligned_cols=73  Identities=19%  Similarity=0.204  Sum_probs=54.0

Q ss_pred             CccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCCCceeeeeecccc
Q 038698          203 SVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       203 ~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                      .+.+|||||||.|-|+..++.... ...+.+.|+++.+++++.+.    |+...+.+.|... +-+...+|+|...-++
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p-~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~-~~p~~~~DvaL~lkti  208 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPA-ETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLE-DRLDEPADVTLLLKTL  208 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCT-TCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTT-SCCCSCCSEEEETTCH
T ss_pred             CCceeeeeccCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecc-cCCCCCcchHHHHHHH
Confidence            357999999999999887776532 22567889999998887643    7777777777433 3467889999876544

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=97.78  E-value=1.1e-05  Score=79.01  Aligned_cols=80  Identities=16%  Similarity=0.115  Sum_probs=55.2

Q ss_pred             HHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCC-CCCC
Q 038698          193 LASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLP-YPSR  266 (283)
Q Consensus       193 I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLP-Fpd~  266 (283)
                      +..++....|  .+|||+|||+|..+..|+++--....+.++|+++.+++.+.++    |+. +.+...|+..++ +.++
T Consensus        97 ~~~~L~~~~g--~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~  174 (456)
T 3m4x_A           97 VGTAAAAKPG--EKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSG  174 (456)
T ss_dssp             HHHHHCCCTT--CEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTT
T ss_pred             HHHHcCCCCC--CEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccc
Confidence            3445555445  6899999999999988887511112456789999888776532    664 445556777765 4578


Q ss_pred             ceeeeeec
Q 038698          267 AFDMAQCS  274 (283)
Q Consensus       267 SFDlV~cs  274 (283)
                      +||+|++.
T Consensus       175 ~FD~Il~D  182 (456)
T 3m4x_A          175 FFDRIVVD  182 (456)
T ss_dssp             CEEEEEEE
T ss_pred             cCCEEEEC
Confidence            99999963

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=97.75  E-value=3.4e-05  Score=72.30  Aligned_cols=82  Identities=10%  Similarity=0.017  Sum_probs=55.3

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHL  261 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rL  261 (283)
                      ....+.+.+.+... +  .+|||+|||+|.++..|++..   ..+.++|+++.+++.|++.    |+ ++.+..+++..+
T Consensus       200 ~~l~~~~~~~~~~~-~--~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~  273 (369)
T 3bt7_A          200 IQMLEWALDVTKGS-K--GDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEF  273 (369)
T ss_dssp             HHHHHHHHHHTTTC-C--SEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHH
T ss_pred             HHHHHHHHHHhhcC-C--CEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHH
Confidence            34455666666543 3  479999999999999988753   2467789999888877542    55 355666665443


Q ss_pred             -C-CCC--------------Cceeeeeec
Q 038698          262 -P-YPS--------------RAFDMAQCS  274 (283)
Q Consensus       262 -P-Fpd--------------~SFDlV~cs  274 (283)
                       + +.+              .+||+|+..
T Consensus       274 ~~~~~~~~~~~~l~~~~~~~~~fD~Vv~d  302 (369)
T 3bt7_A          274 TQAMNGVREFNRLQGIDLKSYQCETIFVD  302 (369)
T ss_dssp             HHHHSSCCCCTTGGGSCGGGCCEEEEEEC
T ss_pred             HHHHhhccccccccccccccCCCCEEEEC
Confidence             1 222              489999864

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=97.75  E-value=7.8e-05  Score=69.34  Aligned_cols=86  Identities=14%  Similarity=0.067  Sum_probs=59.2

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLPYP  264 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLPFp  264 (283)
                      .+.|.+.++..  ..++|||||||+|.++..|+++.... .+...|. +.+++.|.++    +. .+.+..+|....|++
T Consensus       168 ~~~~~~~~~~~--~~~~v~DvGgG~G~~~~~l~~~~p~~-~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~  243 (353)
T 4a6d_A          168 GRSVLTAFDLS--VFPLMCDLGGGAGALAKECMSLYPGC-KITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP  243 (353)
T ss_dssp             HHHHHHSSCGG--GCSEEEEETCTTSHHHHHHHHHCSSC-EEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC
T ss_pred             HHHHHHhcCcc--cCCeEEeeCCCCCHHHHHHHHhCCCc-eeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC
Confidence            44555555543  34789999999999999999874432 3445565 5667777654    21 244556676666766


Q ss_pred             CCceeeeeecccccccc
Q 038698          265 SRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       265 d~SFDlV~cs~~Li~W~  281 (283)
                      +  +|+|++..+|-+|.
T Consensus       244 ~--~D~~~~~~vlh~~~  258 (353)
T 4a6d_A          244 E--ADLYILARVLHDWA  258 (353)
T ss_dssp             C--CSEEEEESSGGGSC
T ss_pred             C--ceEEEeeeecccCC
Confidence            4  69999999998885

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=97.71  E-value=5.5e-05  Score=70.05  Aligned_cols=77  Identities=8%  Similarity=-0.028  Sum_probs=53.4

Q ss_pred             hhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCCC---C
Q 038698          195 SVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYPS---R  266 (283)
Q Consensus       195 ~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFpd---~  266 (283)
                      .++....|  .+|||+|||+|..+..|++.--....+.++|+++.+++.+.++    |+. +.+..+|+..++..+   +
T Consensus        96 ~~l~~~~g--~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~  173 (309)
T 2b9e_A           96 MLLDPPPG--SHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYH  173 (309)
T ss_dssp             HHHCCCTT--CEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGT
T ss_pred             HHhCCCCC--CEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccC
Confidence            44455445  5899999999999988887410112466788888887776543    653 556667877776543   5


Q ss_pred             ceeeeee
Q 038698          267 AFDMAQC  273 (283)
Q Consensus       267 SFDlV~c  273 (283)
                      +||.|++
T Consensus       174 ~fD~Vl~  180 (309)
T 2b9e_A          174 EVHYILL  180 (309)
T ss_dssp             TEEEEEE
T ss_pred             CCCEEEE
Confidence            8999996

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=97.66  E-value=3.3e-05  Score=74.15  Aligned_cols=87  Identities=16%  Similarity=0.181  Sum_probs=59.7

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcC------------CeeEeeccccChHHHHHHHHH----cCC--
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRN------------VLTMSFAPRDNHEAQVQFALE----RGV--  249 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~------------v~~~sla~~D~s~a~vq~A~e----rg~--  249 (283)
                      ..++.|.+++....+  .+|||.|||+|.|+..+.++-            +....+.|.|+++.+++.|+.    +|+  
T Consensus       158 ~v~~~mv~~l~~~~~--~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~  235 (445)
T 2okc_A          158 PLIQAMVDCINPQMG--ETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT  235 (445)
T ss_dssp             HHHHHHHHHHCCCTT--CCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHhCCCCC--CEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence            346677777765444  589999999999987766530            012346788888888877753    355  


Q ss_pred             -CeEEEeccccCCCCCCCceeeeeecccc
Q 038698          250 -PAVIGVLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       250 -~a~~~v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                       ...+..+++...+... .||+|+++--.
T Consensus       236 ~~~~i~~gD~l~~~~~~-~fD~Iv~NPPf  263 (445)
T 2okc_A          236 DRSPIVCEDSLEKEPST-LVDVILANPPF  263 (445)
T ss_dssp             SCCSEEECCTTTSCCSS-CEEEEEECCCS
T ss_pred             CCCCEeeCCCCCCcccC-CcCEEEECCCC
Confidence             3446666776666553 89999998544

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.66  E-value=1.6e-05  Score=76.93  Aligned_cols=67  Identities=12%  Similarity=-0.054  Sum_probs=50.7

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc------CC-CeEEEeccccC-CCC-CCCceeeeeec
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER------GV-PAVIGVLGTIH-LPY-PSRAFDMAQCS  274 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er------g~-~a~~~v~da~r-LPF-pd~SFDlV~cs  274 (283)
                      .+|||+|||+|..+..|++.+.   .+.++|+++.+++.|++.      |+ ++.+..+|+.. |+. ++++||+|++.
T Consensus        95 ~~VLDLgcG~G~~al~LA~~g~---~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD  170 (410)
T 3ll7_A           95 TKVVDLTGGLGIDFIALMSKAS---QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD  170 (410)
T ss_dssp             CEEEESSCSSSHHHHHHHTTCS---EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred             CEEEEeCCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence            6899999999999999988753   467789999988887643      55 34566677665 343 45789999984

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.66  E-value=0.00014  Score=69.95  Aligned_cols=78  Identities=15%  Similarity=0.196  Sum_probs=48.8

Q ss_pred             ccEEeecCCCccHHHHHHhhc----------------CCeeEeeccccCh-----------HHHHHHHH-HcC--CCeEE
Q 038698          204 VRTALDTGCGVASWGAYLLKR----------------NVLTMSFAPRDNH-----------EAQVQFAL-ERG--VPAVI  253 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r----------------~v~~~sla~~D~s-----------~a~vq~A~-erg--~~a~~  253 (283)
                      .-+|+|+||++|..+..+.+.                ....+.+...|+-           +...+... +.|  .+..+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            578999999999877665543                0123444444544           22222222 223  23343


Q ss_pred             Eec---cccCCCCCCCceeeeeeccccccccc
Q 038698          254 GVL---GTIHLPYPSRAFDMAQCSRCLIPWTS  282 (283)
Q Consensus       254 ~v~---da~rLPFpd~SFDlV~cs~~Li~W~~  282 (283)
                      ..+   +-+...||++|||+||++.+| +|.+
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aL-HWls  163 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCYCL-HWLS  163 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEESCT-TBCS
T ss_pred             EEecchhhhhccCCCCceEEEEeccee-eecC
Confidence            322   356678999999999999999 9975

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.40  E-value=6.4e-05  Score=69.59  Aligned_cols=92  Identities=18%  Similarity=0.162  Sum_probs=52.7

Q ss_pred             CCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CC---eeEeeccccChHHHHHHHHHcCCCeEEEecc
Q 038698          182 FPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NV---LTMSFAPRDNHEAQVQFALERGVPAVIGVLG  257 (283)
Q Consensus       182 F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v---~~~sla~~D~s~a~vq~A~erg~~a~~~v~d  257 (283)
                      |-..+...+.+|.+...+..+  .+|||+|||+|.|+.+.+++ ++   .++++ +.|+....+.. ...+.+......+
T Consensus        55 YrSRaA~KL~ei~ek~~l~~~--~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dV-GvDl~~~pi~~-~~~g~~ii~~~~~  130 (277)
T 3evf_A           55 AVSRGTAKLRWFHERGYVKLE--GRVIDLGCGRGGWCYYAAAQKEVSGVKGFTL-GRDGHEKPMNV-QSLGWNIITFKDK  130 (277)
T ss_dssp             CSSTHHHHHHHHHHTTSSCCC--EEEEEETCTTCHHHHHHHTSTTEEEEEEECC-CCTTCCCCCCC-CBTTGGGEEEECS
T ss_pred             ccccHHHHHHHHHHhCCCCCC--CEEEEecCCCCHHHHHHHHhcCCCcceeEEE-eccCccccccc-CcCCCCeEEEecc
Confidence            333444556667666445444  58999999999999987765 22   22322 23332110000 0012233333334


Q ss_pred             ccCCCCCCCceeeeeecccc
Q 038698          258 TIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       258 a~rLPFpd~SFDlV~cs~~L  277 (283)
                      ++-.+|+++.||+|+|..+.
T Consensus       131 ~dv~~l~~~~~DlVlsD~ap  150 (277)
T 3evf_A          131 TDIHRLEPVKCDTLLCDIGE  150 (277)
T ss_dssp             CCTTTSCCCCCSEEEECCCC
T ss_pred             ceehhcCCCCccEEEecCcc
Confidence            45678889999999997643

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.39  E-value=8e-05  Score=70.94  Aligned_cols=79  Identities=14%  Similarity=0.151  Sum_probs=47.4

Q ss_pred             CccEEeecCCCccHHHHHHhhc---------------CCeeEeeccccChHHHHHHHHHc-C-----CCeEEE--ec-cc
Q 038698          203 SVRTALDTGCGVASWGAYLLKR---------------NVLTMSFAPRDNHEAQVQFALER-G-----VPAVIG--VL-GT  258 (283)
Q Consensus       203 ~~r~VLDVGCGtGsfaa~L~~r---------------~v~~~sla~~D~s~a~vq~A~er-g-----~~a~~~--v~-da  258 (283)
                      +.-+|+|+||++|..+..+.+.               ....+.+...|+-....+...+. .     .+..+.  +. +-
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF  130 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence            4567999999999765544432               12234444444433322222111 0     122332  22 35


Q ss_pred             cCCCCCCCceeeeeeccccccccc
Q 038698          259 IHLPYPSRAFDMAQCSRCLIPWTS  282 (283)
Q Consensus       259 ~rLPFpd~SFDlV~cs~~Li~W~~  282 (283)
                      +...||++|||+|||+.+| +|.+
T Consensus       131 y~rlfp~~S~d~v~Ss~aL-HWls  153 (359)
T 1m6e_X          131 YGRLFPRNTLHFIHSSYSL-MWLS  153 (359)
T ss_dssp             SSCCSCTTCBSCEEEESCT-TBCS
T ss_pred             hhccCCCCceEEEEehhhh-hhcc
Confidence            6689999999999999999 9976

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.38  E-value=0.00022  Score=72.92  Aligned_cols=84  Identities=17%  Similarity=0.205  Sum_probs=57.9

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc--CC---------------------------------------e
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR--NV---------------------------------------L  227 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r--~v---------------------------------------~  227 (283)
                      ....|..+.....+  .++||.+||+|+++...+..  ++                                       .
T Consensus       178 LAa~ll~~~~~~~~--~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~  255 (703)
T 3v97_A          178 LAAAIVMRSGWQPG--TPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEY  255 (703)
T ss_dssp             HHHHHHHHTTCCTT--SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhCCCCC--CeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccC
Confidence            34455666654433  68999999999986543321  10                                       0


Q ss_pred             eEeeccccChHHHHHHHHHc----CCC--eEEEeccccCC--CCCCCceeeeeec
Q 038698          228 TMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHL--PYPSRAFDMAQCS  274 (283)
Q Consensus       228 ~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rL--PFpd~SFDlV~cs  274 (283)
                      ...+.+.|+++.+++.|++.    |+.  ..+...|+..+  |+.+++||+|+|+
T Consensus       256 ~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~N  310 (703)
T 3v97_A          256 SSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSN  310 (703)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEEC
T ss_pred             CccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeC
Confidence            13577899999998887643    664  46777788777  6666699999997

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.28  E-value=0.00017  Score=65.49  Aligned_cols=84  Identities=10%  Similarity=0.075  Sum_probs=52.6

Q ss_pred             HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHH-------HHHHHHc----C-C--CeEEEec
Q 038698          191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQ-------VQFALER----G-V--PAVIGVL  256 (283)
Q Consensus       191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~-------vq~A~er----g-~--~a~~~v~  256 (283)
                      +.|.+.+.+..|...+|||+|||+|..+..|++++.   .+.++|.++..       ++.+.+.    + +  .+.+..+
T Consensus        76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~---~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~  152 (258)
T 2oyr_A           76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (258)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC---CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred             HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEEC
Confidence            456666665444235899999999999999998754   35566777753       3333211    1 1  2345556


Q ss_pred             cccC-CCCCCCceeeeeecccc
Q 038698          257 GTIH-LPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       257 da~r-LPFpd~SFDlV~cs~~L  277 (283)
                      |+.. |+....+||+|++.-..
T Consensus       153 D~~~~L~~~~~~fDvV~lDP~y  174 (258)
T 2oyr_A          153 SSLTALTDITPRPQVVYLDPMF  174 (258)
T ss_dssp             CHHHHSTTCSSCCSEEEECCCC
T ss_pred             CHHHHHHhCcccCCEEEEcCCC
Confidence            6544 55433479999986544

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.27  E-value=0.00073  Score=64.57  Aligned_cols=24  Identities=25%  Similarity=0.481  Sum_probs=20.7

Q ss_pred             ccCCCCCCCceeeeeeccccccccc
Q 038698          258 TIHLPYPSRAFDMAQCSRCLIPWTS  282 (283)
Q Consensus       258 a~rLPFpd~SFDlV~cs~~Li~W~~  282 (283)
                      -+.-.||++|||+|||+.+| +|.+
T Consensus       141 Fy~rlfP~~S~d~v~Ss~aL-HWls  164 (374)
T 3b5i_A          141 FYRRLFPARTIDFFHSAFSL-HWLS  164 (374)
T ss_dssp             TTSCCSCTTCEEEEEEESCT-TBCS
T ss_pred             hhcccCCCcceEEEEeccee-eeec
Confidence            34456999999999999999 9976

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.13  E-value=0.002  Score=61.85  Aligned_cols=68  Identities=15%  Similarity=0.129  Sum_probs=47.5

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                      .+|||+||.+|.|+.+|++++..++.+....+++.    ..+ ...+.+...|+..+..+.+.||+|+|-.+.
T Consensus       213 ~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~----l~~-~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~  280 (375)
T 4auk_A          213 MWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQS----LMD-TGQVTWLREDGFKFRPTRSNISWMVCDMVE  280 (375)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHH----HHT-TTCEEEECSCTTTCCCCSSCEEEEEECCSS
T ss_pred             CEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChh----hcc-CCCeEEEeCccccccCCCCCcCEEEEcCCC
Confidence            69999999999999999998654433332222221    111 223556667888888888999999996654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.09  E-value=0.00051  Score=63.39  Aligned_cols=60  Identities=12%  Similarity=0.029  Sum_probs=36.9

Q ss_pred             cEEeecCC------CccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEE-EeccccCCCCCCCceeeeeecc
Q 038698          205 RTALDTGC------GVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVI-GVLGTIHLPYPSRAFDMAQCSR  275 (283)
Q Consensus       205 r~VLDVGC------GtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~-~v~da~rLPFpd~SFDlV~cs~  275 (283)
                      .+|||+||      |+|+  ..++++-.....+.++|+++. +     .+  +.+ ..+|+..+|++ ++||+|+|..
T Consensus        65 ~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-----~~--v~~~i~gD~~~~~~~-~~fD~Vvsn~  131 (290)
T 2xyq_A           65 MRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-----SD--ADSTLIGDCATVHTA-NKWDLIISDM  131 (290)
T ss_dssp             CEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-----CS--SSEEEESCGGGCCCS-SCEEEEEECC
T ss_pred             CEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-----CC--CEEEEECccccCCcc-CcccEEEEcC
Confidence            68999999      5576  333332110113455566654 1     13  334 56788888876 7899999964

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.04  E-value=0.00058  Score=67.95  Aligned_cols=86  Identities=10%  Similarity=0.050  Sum_probs=58.0

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc----C--C--------eeEeeccccChHHHHHHHHH----cCCC
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR----N--V--------LTMSFAPRDNHEAQVQFALE----RGVP  250 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r----~--v--------~~~sla~~D~s~a~vq~A~e----rg~~  250 (283)
                      -++.|.+++....   .+|||.+||+|.|...+.++    .  .        ....+.|.|+.+..++.|+.    +|+.
T Consensus       233 Vv~lmv~ll~p~~---~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~  309 (544)
T 3khk_A          233 IVTLIVEMLEPYK---GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGID  309 (544)
T ss_dssp             HHHHHHHHHCCCS---EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhcCC---CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            3677778776543   38999999999987665432    0  0        03468899999988887753    3654


Q ss_pred             eEE--EeccccCCC-CCCCceeeeeecccc
Q 038698          251 AVI--GVLGTIHLP-YPSRAFDMAQCSRCL  277 (283)
Q Consensus       251 a~~--~v~da~rLP-Fpd~SFDlV~cs~~L  277 (283)
                      ..+  ..+++...| +++..||+|+++-=.
T Consensus       310 ~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf  339 (544)
T 3khk_A          310 FNFGKKNADSFLDDQHPDLRADFVMTNPPF  339 (544)
T ss_dssp             CBCCSSSCCTTTSCSCTTCCEEEEEECCCS
T ss_pred             cccceeccchhcCcccccccccEEEECCCc
Confidence            333  445544444 678899999997433

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=97.01  E-value=0.0017  Score=62.27  Aligned_cols=70  Identities=11%  Similarity=0.016  Sum_probs=48.2

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH---c-CCC---eEEEeccccCC-C-CCCCceeeeeec
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE---R-GVP---AVIGVLGTIHL-P-YPSRAFDMAQCS  274 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e---r-g~~---a~~~v~da~rL-P-Fpd~SFDlV~cs  274 (283)
                      .+|||++||+|.++..++.+.--+..+..+|+++..++.+.+   + |+.   +.+..+|+..+ . -..+.||+|++.
T Consensus        54 ~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD  132 (392)
T 3axs_A           54 VKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD  132 (392)
T ss_dssp             EEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred             CEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence            689999999999999888752112356788999988877653   2 553   45555564332 1 224689999874

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=96.96  E-value=0.00035  Score=69.31  Aligned_cols=86  Identities=10%  Similarity=0.060  Sum_probs=57.8

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc----CC-------------eeEeeccccChHHHHHHHHH----c
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR----NV-------------LTMSFAPRDNHEAQVQFALE----R  247 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r----~v-------------~~~sla~~D~s~a~vq~A~e----r  247 (283)
                      .++.|.+++....+  .+|||.+||+|.|+..+.++    ..             ....+.|+|+.+.+++.|+.    +
T Consensus       157 iv~~mv~~l~p~~~--~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~  234 (541)
T 2ar0_A          157 LIKTIIHLLKPQPR--EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH  234 (541)
T ss_dssp             HHHHHHHHHCCCTT--CCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhccCCC--CeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHh
Confidence            45667777765444  58999999999988765542    10             11256788999988887753    3


Q ss_pred             CCC------eEEEeccccCCC-CCCCceeeeeeccc
Q 038698          248 GVP------AVIGVLGTIHLP-YPSRAFDMAQCSRC  276 (283)
Q Consensus       248 g~~------a~~~v~da~rLP-Fpd~SFDlV~cs~~  276 (283)
                      |+.      ..+..+++...+ ++...||+|+++--
T Consensus       235 gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPP  270 (541)
T 2ar0_A          235 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPP  270 (541)
T ss_dssp             TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCC
T ss_pred             CCCccccccCCeEeCCCcccccccccCCeEEEECCC
Confidence            554      345556654443 56789999999743

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=96.91  E-value=0.00047  Score=63.94  Aligned_cols=90  Identities=13%  Similarity=0.027  Sum_probs=50.4

Q ss_pred             chhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH---cCCCeEEEeccccCC
Q 038698          185 GADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE---RGVPAVIGVLGTIHL  261 (283)
Q Consensus       185 ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e---rg~~a~~~v~da~rL  261 (283)
                      .+...+.+|.+..-+..+  .+|||+|||+|.|+.+.+++.. +.++.++|+...+...+..   .+........++.-.
T Consensus        74 RAAfKL~ei~eK~~Lk~~--~~VLDLGaAPGGWsQvAa~~~g-v~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~  150 (282)
T 3gcz_A           74 RGSAKLRWMEERGYVKPT--GIVVDLGCGRGGWSYYAASLKN-VKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVF  150 (282)
T ss_dssp             THHHHHHHHHHTTSCCCC--EEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGG
T ss_pred             HHHHHHHHHHHhcCCCCC--CEEEEeCCCCCHHHHHHHHhcC-CCeeeeEEeccCccccccccccCCCceEEeeCCcchh
Confidence            344446666666655545  6899999999999998876421 2233455544321111110   021222222122233


Q ss_pred             CCCCCceeeeeecccc
Q 038698          262 PYPSRAFDMAQCSRCL  277 (283)
Q Consensus       262 PFpd~SFDlV~cs~~L  277 (283)
                      .++.+.+|+|+|-.+-
T Consensus       151 ~l~~~~~DvVLSDmAp  166 (282)
T 3gcz_A          151 NMEVIPGDTLLCDIGE  166 (282)
T ss_dssp             GSCCCCCSEEEECCCC
T ss_pred             hcCCCCcCEEEecCcc
Confidence            4678899999997664

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=96.80  E-value=0.001  Score=63.19  Aligned_cols=69  Identities=16%  Similarity=0.088  Sum_probs=47.0

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----c---------------CCC-eEEEeccccCCCC-
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----R---------------GVP-AVIGVLGTIHLPY-  263 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----r---------------g~~-a~~~v~da~rLPF-  263 (283)
                      .+|||+|||+|.++..++++.. ...+..+|+++..++.|++    .               ++. +.+..+|+..+.. 
T Consensus        49 ~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~  127 (378)
T 2dul_A           49 KIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  127 (378)
T ss_dssp             SEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence            5899999999999998888621 1246778999888877653    2               443 4455556544321 


Q ss_pred             CCCceeeeeec
Q 038698          264 PSRAFDMAQCS  274 (283)
Q Consensus       264 pd~SFDlV~cs  274 (283)
                      ..+.||+|+..
T Consensus       128 ~~~~fD~I~lD  138 (378)
T 2dul_A          128 RHRYFHFIDLD  138 (378)
T ss_dssp             STTCEEEEEEC
T ss_pred             ccCCCCEEEeC
Confidence            14679999853

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=96.65  E-value=0.0018  Score=64.47  Aligned_cols=86  Identities=16%  Similarity=0.141  Sum_probs=57.7

Q ss_pred             HHHHHHhhCCCC--CCCccEEeecCCCccHHHHHHhhcC--CeeEeeccccChHHHHHHHHH----cCCC---eEEEecc
Q 038698          189 YIDELASVIPIK--DGSVRTALDTGCGVASWGAYLLKRN--VLTMSFAPRDNHEAQVQFALE----RGVP---AVIGVLG  257 (283)
Q Consensus       189 Yid~I~~~l~~~--~g~~r~VLDVGCGtGsfaa~L~~r~--v~~~sla~~D~s~a~vq~A~e----rg~~---a~~~v~d  257 (283)
                      -++.|.+++...  .....+|||.+||+|.|...+.++-  .....+.|.|+.+..++.|+.    +|+.   ..+..+|
T Consensus       205 Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gD  284 (542)
T 3lkd_A          205 VAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNAD  284 (542)
T ss_dssp             HHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESC
T ss_pred             HHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecc
Confidence            356666666521  1123689999999999876665541  113457888999888877753    4662   3466667


Q ss_pred             ccCC--C-CCCCceeeeeec
Q 038698          258 TIHL--P-YPSRAFDMAQCS  274 (283)
Q Consensus       258 a~rL--P-Fpd~SFDlV~cs  274 (283)
                      +...  | +++..||+|+++
T Consensus       285 tL~~d~p~~~~~~fD~IvaN  304 (542)
T 3lkd_A          285 TLDEDWPTQEPTNFDGVLMN  304 (542)
T ss_dssp             TTTSCSCCSSCCCBSEEEEC
T ss_pred             eecccccccccccccEEEec
Confidence            6655  4 567899999987

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.51  E-value=0.0037  Score=56.70  Aligned_cols=54  Identities=17%  Similarity=0.060  Sum_probs=39.0

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER  247 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er  247 (283)
                      ..++.|.++.. ..|  .+|||++||+|+++..+++.+.   .+.++|+++.+++.|.+|
T Consensus       223 ~l~~~~i~~~~-~~~--~~vlD~f~GsGt~~~~a~~~g~---~~~g~e~~~~~~~~a~~r  276 (297)
T 2zig_A          223 ELAERLVRMFS-FVG--DVVLDPFAGTGTTLIAAARWGR---RALGVELVPRYAQLAKER  276 (297)
T ss_dssp             HHHHHHHHHHC-CTT--CEEEETTCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCC--CEEEECCCCCCHHHHHHHHcCC---eEEEEeCCHHHHHHHHHH
Confidence            34555555554 234  5899999999999888777654   456788888888888765

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=96.22  E-value=0.0031  Score=66.22  Aligned_cols=71  Identities=13%  Similarity=0.007  Sum_probs=46.2

Q ss_pred             cEEeecCCCccHHHHHHhhcC--CeeEeeccccChHHHHHHH--HH--------cCCCe-EEEeccccCC-CCCCCceee
Q 038698          205 RTALDTGCGVASWGAYLLKRN--VLTMSFAPRDNHEAQVQFA--LE--------RGVPA-VIGVLGTIHL-PYPSRAFDM  270 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~--v~~~sla~~D~s~a~vq~A--~e--------rg~~a-~~~v~da~rL-PFpd~SFDl  270 (283)
                      .+|||.|||+|.|+..++++.  .....+.|.|+++.++..|  +.        .++.. .+...+...+ +.....||+
T Consensus       323 ~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFDV  402 (878)
T 3s1s_A          323 EVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVSV  402 (878)
T ss_dssp             CEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEEE
T ss_pred             CEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCCE
Confidence            689999999999998887652  1123567888888777777  21        23322 3332233332 346788999


Q ss_pred             eeecc
Q 038698          271 AQCSR  275 (283)
Q Consensus       271 V~cs~  275 (283)
                      |+|+-
T Consensus       403 VIgNP  407 (878)
T 3s1s_A          403 VVMNP  407 (878)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            99964

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=96.12  E-value=0.0014  Score=55.89  Aligned_cols=57  Identities=18%  Similarity=0.165  Sum_probs=35.7

Q ss_pred             cEEeecCCCcc-HHHHHHhh-cCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCC--Cceeeeeecc
Q 038698          205 RTALDTGCGVA-SWGAYLLK-RNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPS--RAFDMAQCSR  275 (283)
Q Consensus       205 r~VLDVGCGtG-sfaa~L~~-r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd--~SFDlV~cs~  275 (283)
                      .+|||||||.| ..+.+|++ +++   ++...|+++..++          +...|..+ |..+  ..||+|.+-+
T Consensus        37 ~rVlEVG~G~g~~vA~~La~~~g~---~V~atDInp~Av~----------~v~dDiF~-P~~~~Y~~~DLIYsir   97 (153)
T 2k4m_A           37 TRVVEVGAGRFLYVSDYIRKHSKV---DLVLTDIKPSHGG----------IVRDDITS-PRMEIYRGAALIYSIR   97 (153)
T ss_dssp             SEEEEETCTTCCHHHHHHHHHSCC---EEEEECSSCSSTT----------EECCCSSS-CCHHHHTTEEEEEEES
T ss_pred             CcEEEEccCCChHHHHHHHHhCCC---eEEEEECCccccc----------eEEccCCC-CcccccCCcCEEEEcC
Confidence            58999999999 58999987 654   2334455443222          22334444 5444  4899997643

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=95.89  E-value=0.0056  Score=57.23  Aligned_cols=92  Identities=20%  Similarity=0.139  Sum_probs=49.1

Q ss_pred             CCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHH---HcCCCeEEEecc
Q 038698          182 FPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFAL---ERGVPAVIGVLG  257 (283)
Q Consensus       182 F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~---erg~~a~~~v~d  257 (283)
                      +...+...+.+|.+. .+.. ...+|||+||++|.|+.+++++ ++  .++.++|+...+...+.   ..+........+
T Consensus        62 yrSRaa~KL~ei~ek-~l~~-~g~~vlDLGaaPGgWsqva~~~~gv--~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~  137 (300)
T 3eld_A           62 SVSRGAAKIRWLHER-GYLR-ITGRVLDLGCGRGGWSYYAAAQKEV--MSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDK  137 (300)
T ss_dssp             CSSTTHHHHHHHHHH-TSCC-CCEEEEEETCTTCHHHHHHHTSTTE--EEEEEECCCCTTSCCCCCCCBTTGGGEEEECS
T ss_pred             ccchHHHHHHHHHHh-CCCC-CCCEEEEcCCCCCHHHHHHHHhcCC--ceeeeEEeccccccccccccccCCceEEeecC
Confidence            333444456666666 5432 2389999999999999999985 32  23334444321100000   001111111112


Q ss_pred             ccCCCCCCCceeeeeecccc
Q 038698          258 TIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       258 a~rLPFpd~SFDlV~cs~~L  277 (283)
                      +.-.-+..+.+|+|+|-.+-
T Consensus       138 ~di~~l~~~~~DlVlsD~AP  157 (300)
T 3eld_A          138 SNVFTMPTEPSDTLLCDIGE  157 (300)
T ss_dssp             CCTTTSCCCCCSEEEECCCC
T ss_pred             ceeeecCCCCcCEEeecCcC
Confidence            22234567899999997553

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=95.73  E-value=0.022  Score=53.60  Aligned_cols=88  Identities=15%  Similarity=0.177  Sum_probs=49.1

Q ss_pred             CCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHH---HHHHcCCC-eEEEec
Q 038698          182 FPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQ---FALERGVP-AVIGVL  256 (283)
Q Consensus       182 F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq---~A~erg~~-a~~~v~  256 (283)
                      |...+...++.|.+...+..+  .+|||+||++|.|+.+.+.. ++.  .+.++|+-...-.   .....+-+ +.+...
T Consensus        75 y~SR~~~KL~ei~~~~~l~~~--~~VlDLGaapGGwsq~~~~~~gv~--~V~avdvG~~~he~P~~~~ql~w~lV~~~~~  150 (321)
T 3lkz_A           75 PVSRGTAKLRWLVERRFLEPV--GKVIDLGCGRGGWCYYMATQKRVQ--EVRGYTKGGPGHEEPQLVQSYGWNIVTMKSG  150 (321)
T ss_dssp             CSSTHHHHHHHHHHTTSCCCC--EEEEEETCTTCHHHHHHTTCTTEE--EEEEECCCSTTSCCCCCCCBTTGGGEEEECS
T ss_pred             ccchHHHHHHHHHHhcCCCCC--CEEEEeCCCCCcHHHHHHhhcCCC--EEEEEEcCCCCccCcchhhhcCCcceEEEec
Confidence            444455556777776555555  59999999999999977764 332  3334443222000   00011111 333333


Q ss_pred             -cccCCCCCCCceeeeeecc
Q 038698          257 -GTIHLPYPSRAFDMAQCSR  275 (283)
Q Consensus       257 -da~rLPFpd~SFDlV~cs~  275 (283)
                       |+..|+-  ..+|+|+|--
T Consensus       151 ~Dv~~l~~--~~~D~ivcDi  168 (321)
T 3lkz_A          151 VDVFYRPS--ECCDTLLCDI  168 (321)
T ss_dssp             CCTTSSCC--CCCSEEEECC
T ss_pred             cCHhhCCC--CCCCEEEEEC
Confidence             5666654  5599999853

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=95.43  E-value=0.011  Score=54.08  Aligned_cols=85  Identities=16%  Similarity=0.179  Sum_probs=49.1

Q ss_pred             CchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-C---CeeEeeccccChHHHHHHHHHcCCC-eEEEec-c
Q 038698          184 QGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-N---VLTMSFAPRDNHEAQVQFALERGVP-AVIGVL-G  257 (283)
Q Consensus       184 ~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~---v~~~sla~~D~s~a~vq~A~erg~~-a~~~v~-d  257 (283)
                      ..+...++.|.+..-+..+  .+|||+||++|.|+.+.+.. +   |.++++.+.+..+-+  .....|-+ +.+... |
T Consensus        61 SRa~~KL~ei~ek~~l~~g--~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~--~~~s~gwn~v~fk~gvD  136 (267)
T 3p8z_A           61 SRGSAKLQWFVERNMVIPE--GRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV--PMSTYGWNIVKLMSGKD  136 (267)
T ss_dssp             STHHHHHHHHHHTTSSCCC--EEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC--CCCCTTTTSEEEECSCC
T ss_pred             chHHHHHHHHHHhcCCCCC--CEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc--hhhhcCcCceEEEeccc
Confidence            3445557777777655555  59999999999999977764 3   333444332221100  00112333 335444 6


Q ss_pred             ccCCCCCCCceeeeeec
Q 038698          258 TIHLPYPSRAFDMAQCS  274 (283)
Q Consensus       258 a~rLPFpd~SFDlV~cs  274 (283)
                      ..+++=  ..+|+|+|-
T Consensus       137 v~~~~~--~~~DtllcD  151 (267)
T 3p8z_A          137 VFYLPP--EKCDTLLCD  151 (267)
T ss_dssp             GGGCCC--CCCSEEEEC
T ss_pred             eeecCC--ccccEEEEe
Confidence            555543  559999995

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=95.21  E-value=0.04  Score=56.14  Aligned_cols=87  Identities=11%  Similarity=0.089  Sum_probs=46.6

Q ss_pred             hHHHHHHHhhC----CC--CCCCccEEeecCCCccHH---HHHHhhcCCeeEeeccccChHHH---HHHHHHcCCC--eE
Q 038698          187 DAYIDELASVI----PI--KDGSVRTALDTGCGVASW---GAYLLKRNVLTMSFAPRDNHEAQ---VQFALERGVP--AV  252 (283)
Q Consensus       187 ~~Yid~I~~~l----~~--~~g~~r~VLDVGCGtGsf---aa~L~~r~v~~~sla~~D~s~a~---vq~A~erg~~--a~  252 (283)
                      +.|-+.|.+.|    +.  ......+|||||||+|-+   +.+-.++....+.+..++-++..   .+...+.+..  +.
T Consensus       335 ~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVt  414 (637)
T 4gqb_A          335 SQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVT  414 (637)
T ss_dssp             HHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEE
T ss_pred             HHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEE
Confidence            45655665543    22  223446899999999976   33333332222333344333321   2222223432  44


Q ss_pred             EEeccccCCCCCCCceeeeeec
Q 038698          253 IGVLGTIHLPYPSRAFDMAQCS  274 (283)
Q Consensus       253 ~~v~da~rLPFpd~SFDlV~cs  274 (283)
                      +..++++.+-.| ..+|+|+|.
T Consensus       415 VI~gd~eev~LP-EKVDIIVSE  435 (637)
T 4gqb_A          415 VVSSDMREWVAP-EKADIIVSE  435 (637)
T ss_dssp             EEESCTTTCCCS-SCEEEEECC
T ss_pred             EEeCcceeccCC-cccCEEEEE
Confidence            555677777666 579999985

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=94.55  E-value=0.033  Score=51.59  Aligned_cols=80  Identities=16%  Similarity=0.079  Sum_probs=54.7

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC-CCeEEEeccccCCC-----C
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG-VPAVIGVLGTIHLP-----Y  263 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg-~~a~~~v~da~rLP-----F  263 (283)
                      ++.+.+.+.+..+  .++||.+||.|..+..|++++   ..+.++|.++.+++.|.+.. ....+...+...|+     .
T Consensus        11 l~e~le~L~~~~g--g~~VD~T~G~GGHS~~il~~~---g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~   85 (285)
T 1wg8_A           11 YQEALDLLAVRPG--GVYVDATLGGAGHARGILERG---GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL   85 (285)
T ss_dssp             HHHHHHHHTCCTT--CEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred             HHHHHHhhCCCCC--CEEEEeCCCCcHHHHHHHHCC---CEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHc
Confidence            5566666666544  489999999999999999983   25778999999998887611 12344444444432     2


Q ss_pred             CCCceeeeeec
Q 038698          264 PSRAFDMAQCS  274 (283)
Q Consensus       264 pd~SFDlV~cs  274 (283)
                      ..+.||.|++.
T Consensus        86 g~~~vDgIL~D   96 (285)
T 1wg8_A           86 GVERVDGILAD   96 (285)
T ss_dssp             TCSCEEEEEEE
T ss_pred             CCCCcCEEEeC
Confidence            33578888853

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=93.12  E-value=0.13  Score=50.72  Aligned_cols=87  Identities=13%  Similarity=0.196  Sum_probs=56.0

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhh----cCCe--------eEeeccccChHHHHHHHHH----cCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLK----RNVL--------TMSFAPRDNHEAQVQFALE----RGVP  250 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~----r~v~--------~~sla~~D~s~a~vq~A~e----rg~~  250 (283)
                      ..-++.|.+++....|  .+|||-.||+|.|.....+    ....        ...+.|.|+.+.....|+-    +|+.
T Consensus       203 ~~Vv~lmv~l~~p~~~--~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~  280 (530)
T 3ufb_A          203 RPVVRFMVEVMDPQLG--ESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE  280 (530)
T ss_dssp             HHHHHHHHHHHCCCTT--CCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHhhccCCC--CEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc
Confidence            3447788888876555  5899999999999754333    2110        1246778888877666642    3553


Q ss_pred             -eEEEeccccCCCCC----CCceeeeeecc
Q 038698          251 -AVIGVLGTIHLPYP----SRAFDMAQCSR  275 (283)
Q Consensus       251 -a~~~v~da~rLPFp----d~SFDlV~cs~  275 (283)
                       ..+...++-..|+.    ...||+|+++-
T Consensus       281 ~~~I~~~dtL~~~~~~~~~~~~fD~Il~NP  310 (530)
T 3ufb_A          281 YPRIDPENSLRFPLREMGDKDRVDVILTNP  310 (530)
T ss_dssp             CCEEECSCTTCSCGGGCCGGGCBSEEEECC
T ss_pred             cccccccccccCchhhhcccccceEEEecC
Confidence             34555565555543    35799999863

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=93.07  E-value=0.17  Score=44.81  Aligned_cols=53  Identities=17%  Similarity=0.051  Sum_probs=36.7

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER  247 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er  247 (283)
                      .++.|.+... ..|  .+|||..||+|+.+....+.+.   ...++|+.+..++.|.+|
T Consensus       201 l~~~~i~~~~-~~~--~~vlD~f~GsGtt~~~a~~~gr---~~ig~e~~~~~~~~~~~r  253 (260)
T 1g60_A          201 LIERIIRASS-NPN--DLVLDCFMGSGTTAIVAKKLGR---NFIGCDMNAEYVNQANFV  253 (260)
T ss_dssp             HHHHHHHHHC-CTT--CEEEESSCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCC--CEEEECCCCCCHHHHHHHHcCC---eEEEEeCCHHHHHHHHHH
Confidence            3444545543 234  5899999999998876666543   345678888888888775

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=92.98  E-value=0.037  Score=57.31  Aligned_cols=90  Identities=14%  Similarity=0.061  Sum_probs=46.7

Q ss_pred             hHHHHHHHhhCCC--C-CCCccEEeecCCCccHHHHHH--hhc--C--------CeeEeeccccChHHHHHHH---HHcC
Q 038698          187 DAYIDELASVIPI--K-DGSVRTALDTGCGVASWGAYL--LKR--N--------VLTMSFAPRDNHEAQVQFA---LERG  248 (283)
Q Consensus       187 ~~Yid~I~~~l~~--~-~g~~r~VLDVGCGtGsfaa~L--~~r--~--------v~~~sla~~D~s~a~vq~A---~erg  248 (283)
                      +.|-+.|.+.+..  . .....+|||||||+|-+...-  +.+  +        .....+..++-++..+...   .+.|
T Consensus       390 ~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng  469 (745)
T 3ua3_A          390 DVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRT  469 (745)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcC
Confidence            3445555554321  1 122458999999999875321  111  1        1123444455544322211   1224


Q ss_pred             C--CeEEEeccccCCCCC-----CCceeeeeeccc
Q 038698          249 V--PAVIGVLGTIHLPYP-----SRAFDMAQCSRC  276 (283)
Q Consensus       249 ~--~a~~~v~da~rLPFp-----d~SFDlV~cs~~  276 (283)
                      .  .+.+...+++.+..|     ....|+|+|...
T Consensus       470 ~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElm  504 (745)
T 3ua3_A          470 WKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELL  504 (745)
T ss_dssp             TTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCC
T ss_pred             CCCeEEEEeCchhhcccccccCCCCcccEEEEecc
Confidence            3  244555677777664     578999998643

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=92.64  E-value=0.071  Score=47.93  Aligned_cols=20  Identities=15%  Similarity=0.074  Sum_probs=15.5

Q ss_pred             CccEEeecCCCccHHHHHHh
Q 038698          203 SVRTALDTGCGVASWGAYLL  222 (283)
Q Consensus       203 ~~r~VLDVGCGtGsfaa~L~  222 (283)
                      ...+|||||+|+|..+..+.
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~   79 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLW   79 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHH
T ss_pred             CCCEEEEECCChHHHHHHHH
Confidence            34689999999998665543

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=91.84  E-value=0.39  Score=44.37  Aligned_cols=86  Identities=17%  Similarity=0.159  Sum_probs=54.8

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc------C----CCeEEEe
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER------G----VPAVIGV  255 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er------g----~~a~~~v  255 (283)
                      -.|.+.|....-...+.+++||=||-|.|..++.+++. .+.  .+..+++.++.++.|++.      +    ....+..
T Consensus        67 ~~YhE~l~h~~l~~~p~pk~VLIiGgGdG~~~revlk~~~v~--~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~  144 (294)
T 3o4f_A           67 FIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVE--SITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVI  144 (294)
T ss_dssp             HHHHHHHHHHHHHHSSCCCEEEEESCTTSHHHHHHHTCTTCC--EEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEE
T ss_pred             HHHHHHHHHHHHhhCCCCCeEEEECCCchHHHHHHHHcCCcc--eEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEe
Confidence            35666655432112245689999999999999988875 333  344567778888877542      1    2244444


Q ss_pred             ccc-cCCCCCCCceeeeeec
Q 038698          256 LGT-IHLPYPSRAFDMAQCS  274 (283)
Q Consensus       256 ~da-~rLPFpd~SFDlV~cs  274 (283)
                      .|+ +-|--.+++||+|+.-
T Consensus       145 ~Dg~~~l~~~~~~yDvIi~D  164 (294)
T 3o4f_A          145 DDGVNFVNQTSQTFDVIISD  164 (294)
T ss_dssp             SCTTTTTSCSSCCEEEEEES
T ss_pred             chHHHHHhhccccCCEEEEe
Confidence            553 3344567899999853

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=90.67  E-value=0.33  Score=44.69  Aligned_cols=87  Identities=21%  Similarity=0.228  Sum_probs=49.1

Q ss_pred             CCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CC---eeEeeccccChHHHHHHHHH-cCCCeE-EEe
Q 038698          182 FPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NV---LTMSFAPRDNHEAQVQFALE-RGVPAV-IGV  255 (283)
Q Consensus       182 F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v---~~~sla~~D~s~a~vq~A~e-rg~~a~-~~v  255 (283)
                      +...+...+.+|.+.-=++.|  .+|||+||+.|+|+.+.+++ ++   .+. +.+.|++..-  .... .|+..+ +..
T Consensus        54 yRSRAayKL~EIdeK~likpg--~~VVDLGaAPGGWSQvAa~~~~vg~V~G~-vig~D~~~~P--~~~~~~Gv~~i~~~~  128 (269)
T 2px2_A           54 PVSRGTAKLRWLVERRFVQPI--GKVVDLGCGRGGWSYYAATMKNVQEVRGY-TKGGPGHEEP--MLMQSYGWNIVTMKS  128 (269)
T ss_dssp             CSSTHHHHHHHHHHTTSCCCC--EEEEEETCTTSHHHHHHTTSTTEEEEEEE-CCCSTTSCCC--CCCCSTTGGGEEEEC
T ss_pred             cccHHHHHHHHHHHcCCCCCC--CEEEEcCCCCCHHHHHHhhhcCCCCceeE-EEccccccCC--CcccCCCceEEEeec
Confidence            444555557777777523445  79999999999999998886 22   222 2344521100  0000 122222 222


Q ss_pred             c-cccCCCCCCCceeeeeecc
Q 038698          256 L-GTIHLPYPSRAFDMAQCSR  275 (283)
Q Consensus       256 ~-da~rLPFpd~SFDlV~cs~  275 (283)
                      + |...+  +...+|+|+|=.
T Consensus       129 G~Df~~~--~~~~~DvVLSDM  147 (269)
T 2px2_A          129 GVDVFYK--PSEISDTLLCDI  147 (269)
T ss_dssp             SCCGGGS--CCCCCSEEEECC
T ss_pred             cCCccCC--CCCCCCEEEeCC
Confidence            3 55543  356799999854

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=87.57  E-value=1.1  Score=42.39  Aligned_cols=76  Identities=11%  Similarity=0.064  Sum_probs=51.4

Q ss_pred             hhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH---Hc-CC-------CeEEEeccccCCC-
Q 038698          195 SVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL---ER-GV-------PAVIGVLGTIHLP-  262 (283)
Q Consensus       195 ~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~---er-g~-------~a~~~v~da~rLP-  262 (283)
                      .+|....|  .+|||+-+|.|.=+.+|++.... ..+...|+++..++...   +| +.       .+.+...|+..++ 
T Consensus       142 ~~L~~~pg--~~VLD~CAaPGGKT~~la~~~~~-~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~  218 (359)
T 4fzv_A          142 LALGLQPG--DIVLDLCAAPGGKTLALLQTGCC-RNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE  218 (359)
T ss_dssp             HHHCCCTT--EEEEESSCTTCHHHHHHHHTTCE-EEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH
T ss_pred             HHhCCCCC--CEEEEecCCccHHHHHHHHhcCC-CcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch
Confidence            34455556  68999999999888888876433 24677888887655432   22 32       3455556766664 


Q ss_pred             CCCCceeeeee
Q 038698          263 YPSRAFDMAQC  273 (283)
Q Consensus       263 Fpd~SFDlV~c  273 (283)
                      +..+.||.|.+
T Consensus       219 ~~~~~fD~VLl  229 (359)
T 4fzv_A          219 LEGDTYDRVLV  229 (359)
T ss_dssp             HSTTCEEEEEE
T ss_pred             hccccCCEEEE
Confidence            56789999984

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=87.13  E-value=1.5  Score=38.16  Aligned_cols=38  Identities=11%  Similarity=0.077  Sum_probs=22.4

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL  245 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~  245 (283)
                      .++||++|||  +-+..|++. . ...+..+|..++..+.|+
T Consensus        31 a~~VLEiGtG--ySTl~lA~~-~-~g~VvtvE~d~~~~~~ar   68 (202)
T 3cvo_A           31 AEVILEYGSG--GSTVVAAEL-P-GKHVTSVESDRAWARMMK   68 (202)
T ss_dssp             CSEEEEESCS--HHHHHHHTS-T-TCEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECch--HHHHHHHHc-C-CCEEEEEeCCHHHHHHHH
Confidence            3799999996  445555553 1 123444566666655554

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=85.52  E-value=0.61  Score=43.21  Aligned_cols=70  Identities=14%  Similarity=0.023  Sum_probs=45.5

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCC---CCCCceeeeeec
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLP---YPSRAFDMAQCS  274 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLP---Fpd~SFDlV~cs  274 (283)
                      .++||+-||.|.++.-|.+.++..-.+..+|+.+..++...+.-....+...|+..+.   ++...+|+|+..
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~g   75 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMS   75 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEc
Confidence            4799999999999988888774322356778888877766654322223345655553   122258988864

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=85.07  E-value=0.4  Score=45.26  Aligned_cols=37  Identities=14%  Similarity=0.147  Sum_probs=28.7

Q ss_pred             HHHHHHHhhCCCCCC----CccEEeecCCCccHHHHHHhhc
Q 038698          188 AYIDELASVIPIKDG----SVRTALDTGCGVASWGAYLLKR  224 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g----~~r~VLDVGCGtGsfaa~L~~r  224 (283)
                      ..++.|.+.+.+..+    ...+|||||.|.|.++..|+++
T Consensus        39 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~   79 (353)
T 1i4w_A           39 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNK   79 (353)
T ss_dssp             HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHH
T ss_pred             HHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhh
Confidence            457788888775321    2368999999999999999975

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=82.81  E-value=1.2  Score=42.38  Aligned_cols=54  Identities=15%  Similarity=0.143  Sum_probs=41.0

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL  245 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~  245 (283)
                      ++++.+.|.+..|  .+++|..||.|..+..|+++--....+.++|..+++++.|.
T Consensus        46 l~Evl~~L~i~pg--giyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~   99 (347)
T 3tka_A           46 LDEAVNGLNIRPD--GIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK   99 (347)
T ss_dssp             THHHHHHTCCCTT--CEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred             HHHHHHhhCCCCC--CEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            5666677776555  58999999999999998886212225778899999888873

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=80.66  E-value=1.8  Score=41.39  Aligned_cols=110  Identities=15%  Similarity=0.149  Sum_probs=66.6

Q ss_pred             cCCCCCCCCCCCCCCCC---------ceeeecccCCchhhhhhhhc--CceeecCCeeeeCCCCCCCCCchhHHHHHHHh
Q 038698          127 IPAPKGYMTPFPWPKGR---------DYVHYANVPHKSLTVEKAVQ--NWVQFQGNVFKFPGGGTMFPQGADAYIDELAS  195 (283)
Q Consensus       127 v~~P~~Y~~P~~wP~sr---------~~~W~~n~p~~~L~~~k~~q--~w~~~~~~~~~Fpgggt~F~~ga~~Yid~I~~  195 (283)
                      .|...|=....-||.|.         .++....-+|..+...+..+  |.+.++|. +.+       ...-..|.+.|..
T Consensus       127 ~~~~rg~~~~~~~p~sdg~~~~y~v~~vl~~~~S~yQ~I~V~es~~~Gr~L~LDG~-~Q~-------te~D~~Y~e~l~h  198 (381)
T 3c6k_A          127 PPIVRGGAIDRYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGD-VNL-------AESDLAYTRAIMG  198 (381)
T ss_dssp             CCEEESCSSCCBCCCTTCCCBBCCEEEEEEEEECSSCEEEEEEETTTEEEEEETTE-EEE-------ETTCHHHHHHHTT
T ss_pred             CccccCCccCceeECCCCcEEEEEeEEEEEeCCCCCceEEEEEcCCcceEEEECCc-eee-------eCChHHHHHHHHH
Confidence            33344433445688774         34455667887765443221  23444432 322       2211357776655


Q ss_pred             hCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc
Q 038698          196 VIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER  247 (283)
Q Consensus       196 ~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er  247 (283)
                      .... ...+++||=||-|.|..++.+++....  .+..+|+.++.++.|++.
T Consensus       199 ~~l~-~~~pkrVLIIGgGdG~~~revlkh~~~--~V~~VEIDp~VVe~ar~y  247 (381)
T 3c6k_A          199 SGKE-DYTGKDVLILGGGDGGILCEIVKLKPK--MVTMVEIDQMVIDGCKKY  247 (381)
T ss_dssp             TTCC-CCTTCEEEEEECTTCHHHHHHHTTCCS--EEEEEESCHHHHHHHHHH
T ss_pred             HHhh-cCCCCeEEEECCCcHHHHHHHHhcCCc--eeEEEccCHHHHHHHHhh
Confidence            4332 334689999999999999999887553  355678888988888763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	283
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.56
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.49
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.39
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.38
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.35
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.35
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.3
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.23
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.2
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.18
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.18
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.14
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.1
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.06
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.06
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.05
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.05
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.02
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.0
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.94
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.93
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.89
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.87
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.83
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	98.82
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.72
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.71
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.7
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.69
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.69
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.67
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.63
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.61
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.59
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.56
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.55
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.5
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.48
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.47
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.47
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.44
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.43
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.43
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.4
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.38
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.34
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.24
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.19
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.18
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.14
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.14
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.09
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.0
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	97.97
d2h00a1	250	Methyltransferase 10 domain containing protein MET	97.94
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.93
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	97.82
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.74
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	97.72
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.71
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.71
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.61
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	97.52
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.49
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.43
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	97.31
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.31
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.24
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	97.06
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.03
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	97.01
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	96.78
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	96.71
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	96.63
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	96.28
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	95.71
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	95.66
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	95.56
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	95.43
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	95.23
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	94.67
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	94.5
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	94.12
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	92.78
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	92.38
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	91.9
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	91.61
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	91.53
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	91.07
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	91.06
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	90.16
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	90.09
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	90.09
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	90.02
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	89.95
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	89.44
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	86.63
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	83.76
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	81.37
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	81.07

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.56  E-value=4.5e-15  Score=127.63  Aligned_cols=88  Identities=17%  Similarity=0.201  Sum_probs=74.6

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCC
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLP  262 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLP  262 (283)
                      ++.+.|.+.+++++|  .+|||||||+|.++..|+++..   ++.++|+++.|++.|+++    +.+ ..+.+++++.+|
T Consensus         3 ~~~~~l~~~~~~~~~--~rILDiGcGtG~~~~~la~~~~---~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~   77 (234)
T d1xxla_           3 HSLGLMIKTAECRAE--HRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP   77 (234)
T ss_dssp             HHHHHHHHHHTCCTT--CEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC
T ss_pred             hHHHHHHHHhCCCCC--CEEEEeCCcCcHHHHHHHHhCC---eEEEEeCChhhhhhhhhhhccccccccccccccccccc
Confidence            567888899998877  6899999999999999998753   567999999999888644    543 667788999999


Q ss_pred             CCCCceeeeeecccccccc
Q 038698          263 YPSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       263 Fpd~SFDlV~cs~~Li~W~  281 (283)
                      |++++||+|+|..++ .|.
T Consensus        78 ~~~~~fD~v~~~~~l-~~~   95 (234)
T d1xxla_          78 FPDDSFDIITCRYAA-HHF   95 (234)
T ss_dssp             SCTTCEEEEEEESCG-GGC
T ss_pred             ccccccceeeeecee-ecc
Confidence            999999999999988 454

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.49  E-value=3.3e-14  Score=120.48  Aligned_cols=86  Identities=14%  Similarity=0.157  Sum_probs=69.7

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYP  264 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFp  264 (283)
                      +.+|.++++++++  .+|||||||+|.++..|++++.   .+.++|+++.+++.|+++    +.+ ..+.+++.+.|||+
T Consensus         4 ~~~ll~~~~l~~~--~rVLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~   78 (231)
T d1vl5a_           4 LAKLMQIAALKGN--EEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT   78 (231)
T ss_dssp             HHHHHHHHTCCSC--CEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC
T ss_pred             HHHHHHhcCCCCc--CEEEEecccCcHHHHHHHHhCC---EEEEEECCHHHHhhhhhccccccccccccccccccccccc
Confidence            4567788888665  6999999999999999998854   467889999999888643    443 55778899999999


Q ss_pred             CCceeeeeecccccccc
Q 038698          265 SRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       265 d~SFDlV~cs~~Li~W~  281 (283)
                      +++||+|+|..++ .|.
T Consensus        79 ~~~fD~v~~~~~l-~~~   94 (231)
T d1vl5a_          79 DERFHIVTCRIAA-HHF   94 (231)
T ss_dssp             TTCEEEEEEESCG-GGC
T ss_pred             ccccccccccccc-ccc
Confidence            9999999999998 443

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.39  E-value=3.6e-13  Score=112.55  Aligned_cols=72  Identities=19%  Similarity=0.234  Sum_probs=61.1

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCCCceeeeeecccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIP  279 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~  279 (283)
                      .+|||||||+|.++..|++.+.   .+.++|+++.|++.|+++    +....+..+++..|||++++||+|+|..++.+
T Consensus        39 ~~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~  114 (226)
T d1ve3a1          39 GKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH  114 (226)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred             CEEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhh
Confidence            4899999999999999998754   467889999999888754    45556666789999999999999999999844

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.38  E-value=3.6e-13  Score=113.95  Aligned_cols=73  Identities=26%  Similarity=0.469  Sum_probs=61.7

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeecccccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~W~  281 (283)
                      .+|||||||+|.++..|++++.   .+.++|+++.|++.|.+++....+ .++++.|||++++||+|+|....++|.
T Consensus        44 ~~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~~~-~~~~~~l~~~~~~fD~ii~~~~~~~~~  116 (246)
T d2avna1          44 CRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVV-EAKAEDLPFPSGAFEAVLALGDVLSYV  116 (246)
T ss_dssp             CEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEE-ECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred             CEEEEECCCCchhcccccccce---EEEEeecccccccccccccccccc-cccccccccccccccceeeecchhhhh
Confidence            5899999999999999998854   568899999999999998765433 568999999999999999976554654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.35  E-value=9.1e-13  Score=116.34  Aligned_cols=86  Identities=17%  Similarity=0.240  Sum_probs=68.0

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLP  262 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLP  262 (283)
                      ++.|.+..++.+|  .+|||||||+|.++.+|+++ +.   .+.++|+++.|++.|.++    |+.  +.+..+++..||
T Consensus        56 ~~~l~~~~~l~~~--~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~  130 (282)
T d2o57a1          56 ASELAMTGVLQRQ--AKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP  130 (282)
T ss_dssp             HHHHHHTTCCCTT--CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred             HHHHHHhcCCCCC--CEEEEeCCCCcHHHhhhhccCCc---EEEEEeccchhhhhhhccccccccccccccccccccccc
Confidence            3444444555555  69999999999999999886 43   467889999999888754    553  567778999999


Q ss_pred             CCCCceeeeeeccccccc
Q 038698          263 YPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       263 Fpd~SFDlV~cs~~Li~W  280 (283)
                      |++++||+|+|..++.++
T Consensus       131 ~~~~sfD~V~~~~~l~h~  148 (282)
T d2o57a1         131 CEDNSYDFIWSQDAFLHS  148 (282)
T ss_dssp             SCTTCEEEEEEESCGGGC
T ss_pred             ccccccchhhccchhhhc
Confidence            999999999999998655

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=9.8e-13  Score=116.60  Aligned_cols=87  Identities=18%  Similarity=0.223  Sum_probs=70.8

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSR  266 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~  266 (283)
                      +..++.|.+.++.+   ..+|||||||+|.++..|+++.. ...+.++|+++.+++.|.++...+.+.++++.+|||+++
T Consensus        71 ~~~~~~l~~~~~~~---~~~iLDiGcG~G~~~~~l~~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~  146 (268)
T d1p91a_          71 DAIVAQLRERLDDK---ATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDT  146 (268)
T ss_dssp             HHHHHHHHHHSCTT---CCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTT
T ss_pred             HHHHHHHHHhcCCC---CCEEEEeCCCCcHHHHHHHHHCC-CCEEEEecchHhhhhhhhcccccccceeeehhhccCCCC
Confidence            44455566666653   35899999999999999998743 234678899999999999887777888889999999999


Q ss_pred             ceeeeeecccc
Q 038698          267 AFDMAQCSRCL  277 (283)
Q Consensus       267 SFDlV~cs~~L  277 (283)
                      +||+|+|..++
T Consensus       147 sfD~v~~~~~~  157 (268)
T d1p91a_         147 SMDAIIRIYAP  157 (268)
T ss_dssp             CEEEEEEESCC
T ss_pred             CEEEEeecCCH
Confidence            99999997765

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=3.4e-12  Score=110.25  Aligned_cols=89  Identities=18%  Similarity=0.142  Sum_probs=71.9

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIH  260 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~r  260 (283)
                      ...++.|.+++.+.+|  .+|||||||+|.++.+|+++.  ...+.++|+++.|++.|+++    |+.  ..+..+++..
T Consensus        19 ~~~~~~l~~~~~l~pg--~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~   94 (245)
T d1nkva_          19 EEKYATLGRVLRMKPG--TRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG   94 (245)
T ss_dssp             HHHHHHHHHHTCCCTT--CEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred             HHHHHHHHHHcCCCCC--CEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhh
Confidence            4567889999998777  689999999999999998752  12467899999999887654    553  5677788888


Q ss_pred             CCCCCCceeeeeeccccccc
Q 038698          261 LPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       261 LPFpd~SFDlV~cs~~Li~W  280 (283)
                      + +++++||+|+|..++-++
T Consensus        95 ~-~~~~~fD~v~~~~~~~~~  113 (245)
T d1nkva_          95 Y-VANEKCDVAACVGATWIA  113 (245)
T ss_dssp             C-CCSSCEEEEEEESCGGGT
T ss_pred             c-cccCceeEEEEEehhhcc
Confidence            8 679999999999998655

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.23  E-value=6e-12  Score=105.29  Aligned_cols=66  Identities=20%  Similarity=0.262  Sum_probs=55.5

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeecccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIP  279 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~  279 (283)
                      .+|||||||+|.++..|.+.       .++|+++.+++.|.++++  .+.+++++.||+++++||+|+|+.+|-+
T Consensus        38 ~~vLDiGcG~G~~~~~~~~~-------~giD~s~~~~~~a~~~~~--~~~~~d~~~l~~~~~~fD~I~~~~~l~h  103 (208)
T d1vlma_          38 GRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGV--FVLKGTAENLPLKDESFDFALMVTTICF  103 (208)
T ss_dssp             SCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTC--EEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred             CeEEEECCCCcccccccceE-------EEEeCChhhccccccccc--cccccccccccccccccccccccccccc
Confidence            37999999999999888542       367889999999998864  4556789999999999999999999843

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.20  E-value=2.2e-11  Score=103.99  Aligned_cols=73  Identities=21%  Similarity=0.247  Sum_probs=60.3

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCCCceeeeeecccccc
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIP  279 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~  279 (283)
                      ..+|||||||+|.++..|++++.   .+.++|++++|+..|+++    +.+..+.+++++.||++ +.||+|+|....+.
T Consensus        42 ~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~  117 (251)
T d1wzna1          42 VRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM  117 (251)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred             CCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchheehhhhhcccc-cccchHhhhhhhhh
Confidence            36899999999999999999864   567899999999988754    55677888899999998 58999999754434


Q ss_pred             c
Q 038698          280 W  280 (283)
Q Consensus       280 W  280 (283)
                      |
T Consensus       118 ~  118 (251)
T d1wzna1         118 Y  118 (251)
T ss_dssp             G
T ss_pred             c
Confidence            4

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.18  E-value=2.3e-11  Score=104.59  Aligned_cols=83  Identities=17%  Similarity=0.172  Sum_probs=63.0

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPS  265 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd  265 (283)
                      .+.+.+.+........+|||||||+|.++..|++++.   .+.++|+|++|++.|+++    +.++.+.++|+..++++ 
T Consensus        24 ~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~-   99 (246)
T d1y8ca_          24 SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-   99 (246)
T ss_dssp             HHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-
T ss_pred             HHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceeeccchhhhccc-
Confidence            3344444433222346899999999999999999865   467899999999988764    56677777888888874 


Q ss_pred             Cceeeeeeccc
Q 038698          266 RAFDMAQCSRC  276 (283)
Q Consensus       266 ~SFDlV~cs~~  276 (283)
                      ++||+|+|...
T Consensus       100 ~~fD~i~~~~~  110 (246)
T d1y8ca_         100 RKFDLITCCLD  110 (246)
T ss_dssp             CCEEEEEECTT
T ss_pred             ccccccceeee
Confidence            69999998643

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.18  E-value=2.7e-11  Score=107.73  Aligned_cols=90  Identities=19%  Similarity=0.204  Sum_probs=68.1

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLP  262 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLP  262 (283)
                      +.|++.|.+.+... ..+.+|||||||+|.++..|++.......+.++|+++.+++.|+++    +....+...++..+|
T Consensus        12 ~d~l~~l~~~~~~~-~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~   90 (281)
T d2gh1a1          12 DDYVSFLVNTVWKI-TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE   90 (281)
T ss_dssp             HHHHHHHHHTTSCC-CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCC
T ss_pred             HHHHHHHHHHHhcc-CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccc
Confidence            55777776655321 2347899999999999999987532223567889999999988765    444567778999999


Q ss_pred             CCCCceeeeeeccccc
Q 038698          263 YPSRAFDMAQCSRCLI  278 (283)
Q Consensus       263 Fpd~SFDlV~cs~~Li  278 (283)
                      |++ +||+|+|+.++-
T Consensus        91 ~~~-~fD~v~~~~~l~  105 (281)
T d2gh1a1          91 LND-KYDIAICHAFLL  105 (281)
T ss_dssp             CSS-CEEEEEEESCGG
T ss_pred             ccC-CceEEEEehhhh
Confidence            974 799999999983

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.14  E-value=1.9e-11  Score=99.03  Aligned_cols=85  Identities=14%  Similarity=0.036  Sum_probs=62.2

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC-----------------CCe
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG-----------------VPA  251 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg-----------------~~a  251 (283)
                      ++.+.-..|.+.+|  .+|||+|||+|..+.+|++++.   ++.++|+|+.|++.|+++.                 ...
T Consensus         8 ~~~~~~~~l~~~~~--~rvLd~GCG~G~~a~~la~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (201)
T d1pjza_           8 DLQQYWSSLNVVPG--ARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI   82 (201)
T ss_dssp             HHHHHHHHHCCCTT--CEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS
T ss_pred             HHHHHHHHcCCCCC--CEEEEecCcCCHHHHHHHHcCC---ceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccc
Confidence            33344444555445  6999999999999999999864   5678999999999998762                 112


Q ss_pred             EEEeccccCCC-CCCCceeeeeeccccc
Q 038698          252 VIGVLGTIHLP-YPSRAFDMAQCSRCLI  278 (283)
Q Consensus       252 ~~~v~da~rLP-Fpd~SFDlV~cs~~Li  278 (283)
                      .+...+...|+ +...+||+|+|+.++.
T Consensus        83 ~~~~~d~~~l~~~~~~~~D~i~~~~~l~  110 (201)
T d1pjza_          83 EIWCGDFFALTARDIGHCAAFYDRAAMI  110 (201)
T ss_dssp             EEEEECCSSSTHHHHHSEEEEEEESCGG
T ss_pred             ceecccccccccccccceeEEEEEeeeE
Confidence            34445666665 4568999999998874

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=5.3e-11  Score=101.31  Aligned_cols=74  Identities=18%  Similarity=0.073  Sum_probs=60.9

Q ss_pred             ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCCCCceeeeeeccccc
Q 038698          204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYPSRAFDMAQCSRCLI  278 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFpd~SFDlV~cs~~Li  278 (283)
                      ..+|||||||+|.++.+|+++...  .+.++|+++.+++.|+++    +.+ ..+.+++++.+++++++||+|+|..++-
T Consensus        61 ~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~  138 (222)
T d2ex4a1          61 TSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  138 (222)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTTCS--EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCEEEEeccCCCHhhHHHHHhcCC--EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence            368999999999999998776432  467889999999999875    232 3577789999999999999999999884


Q ss_pred             c
Q 038698          279 P  279 (283)
Q Consensus       279 ~  279 (283)
                      +
T Consensus       139 h  139 (222)
T d2ex4a1         139 H  139 (222)
T ss_dssp             G
T ss_pred             c
Confidence            4

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.06  E-value=2.3e-10  Score=95.63  Aligned_cols=69  Identities=17%  Similarity=0.321  Sum_probs=56.3

Q ss_pred             EEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC-eEEEeccccCCCCCCCceeeeeeccccc
Q 038698          206 TALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP-AVIGVLGTIHLPYPSRAFDMAQCSRCLI  278 (283)
Q Consensus       206 ~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~-a~~~v~da~rLPFpd~SFDlV~cs~~Li  278 (283)
                      +|||||||+|.++.+|++++.   .+.++|+++.+++.|.+    .++. ..+...+...+++ +++||+|+|..++-
T Consensus        33 rvLDiGcG~G~~~~~la~~g~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~  106 (198)
T d2i6ga1          33 RTLDLGCGNGRNSLYLAANGY---DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMM  106 (198)
T ss_dssp             EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGG
T ss_pred             cEEEECCCCCHHHHHHHHHhh---hhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeee
Confidence            799999999999999999865   45688999999887653    3555 3456668888886 68999999999884

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.06  E-value=2.1e-10  Score=97.94  Aligned_cols=70  Identities=13%  Similarity=0.015  Sum_probs=57.2

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC-CeEEEeccccCCCCCCCceeeeeeccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV-PAVIGVLGTIHLPYPSRAFDMAQCSRCLI  278 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~-~a~~~v~da~rLPFpd~SFDlV~cs~~Li  278 (283)
                      .+|||||||+|.++..|++++.   ++.++|+++++++.|+++.. ...+..++.+.+++ +++||+|+|..+|-
T Consensus        22 ~~VLDiGcG~G~~~~~l~~~g~---~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vle   92 (225)
T d2p7ia1          22 GNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLE   92 (225)
T ss_dssp             SCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGG
T ss_pred             CcEEEEeCCCcHHHHHHHHcCC---eEEEEeCcHHHhhhhhccccccccccccccccccc-ccccccccccceeE
Confidence            4799999999999999998754   46788999999999987743 34555667778776 58999999999883

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.05  E-value=1.3e-10  Score=102.29  Aligned_cols=85  Identities=16%  Similarity=0.214  Sum_probs=65.3

Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc--CCC-eEEEeccccCCCCCCCce
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER--GVP-AVIGVLGTIHLPYPSRAF  268 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er--g~~-a~~~v~da~rLPFpd~SF  268 (283)
                      .+.+.++..  ...+|||+|||+|.++.+|+.+...  .+.++|.++.+++.|+++  +.+ ..+.+.+.+.+++++++|
T Consensus        84 ~fl~~l~~~--~~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  159 (254)
T d1xtpa_          84 NFIASLPGH--GTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY  159 (254)
T ss_dssp             HHHHTSTTC--CCSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred             HHHhhCCCC--CCCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCcc
Confidence            444555543  3368999999999999988865322  356789999999999876  333 346677899999999999


Q ss_pred             eeeeeccccccc
Q 038698          269 DMAQCSRCLIPW  280 (283)
Q Consensus       269 DlV~cs~~Li~W  280 (283)
                      |+|+|..++-++
T Consensus       160 D~I~~~~vl~hl  171 (254)
T d1xtpa_         160 DLIVIQWTAIYL  171 (254)
T ss_dssp             EEEEEESCGGGS
T ss_pred             ceEEeecccccc
Confidence            999999998554

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.05  E-value=4.7e-10  Score=94.11  Aligned_cols=104  Identities=17%  Similarity=0.226  Sum_probs=72.3

Q ss_pred             ecCCeeeeCCCCCCCCC-chhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH
Q 038698          168 FQGNVFKFPGGGTMFPQ-GADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE  246 (283)
Q Consensus       168 ~~~~~~~Fpgggt~F~~-ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e  246 (283)
                      +.|+.+.|......|.. +.+.-.+.|.+.++...+  .+|||+|||+|.++..|+++..   .+.++|+++.+++.|.+
T Consensus        18 ~~g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~~~~~--~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~   92 (194)
T d1dusa_          18 LRGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKD--DDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKE   92 (194)
T ss_dssp             ETTEEEEEEEETTSTTTTSCCHHHHHHHHHCCCCTT--CEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHH
T ss_pred             ECCeeEEEEcCCCccCCCCcCHHHHHHHHhCCcCCC--CeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHH
Confidence            34666666333225533 334445567777876544  6899999999999999988643   45678999999888865


Q ss_pred             c----CC---CeEEEeccccCCCCCCCceeeeeecccc
Q 038698          247 R----GV---PAVIGVLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       247 r----g~---~a~~~v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                      +    ++   ...+...+... ++++++||+|+|+.++
T Consensus        93 n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p~  129 (194)
T d1dusa_          93 NIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPI  129 (194)
T ss_dssp             HHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCS
T ss_pred             HHHHhCCccceEEEEEcchhh-hhccCCceEEEEcccE
Confidence            3    33   24455556655 7889999999998765

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.02  E-value=4.2e-10  Score=95.63  Aligned_cols=75  Identities=12%  Similarity=0.061  Sum_probs=55.5

Q ss_pred             cEEeecCCCccHHHHHHhhcC-CeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCCCceeeeeecccccc
Q 038698          205 RTALDTGCGVASWGAYLLKRN-VLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIP  279 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~-v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~  279 (283)
                      .+|||||||+|..+..|++.. -....+.++|+|++|++.|.++    +....+......-++++.+.||+|+|+.++ +
T Consensus        41 ~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l-~  119 (225)
T d1im8a_          41 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL-Q  119 (225)
T ss_dssp             CEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCG-G
T ss_pred             CEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeec-c
Confidence            589999999999998888641 1244678999999999999865    333333333445567777889999999887 4


Q ss_pred             c
Q 038698          280 W  280 (283)
Q Consensus       280 W  280 (283)
                      |
T Consensus       120 ~  120 (225)
T d1im8a_         120 F  120 (225)
T ss_dssp             G
T ss_pred             c
Confidence            4

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.00  E-value=1.6e-10  Score=104.70  Aligned_cols=88  Identities=17%  Similarity=0.066  Sum_probs=66.9

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHL  261 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rL  261 (283)
                      ...++.|.+.+.+.+|  .+|||||||.|.++.+|+++ ++   .+.+++++++|+..|.++    |....+.+ .....
T Consensus        47 ~~k~~~~~~~l~l~~G--~~VLDiGCG~G~~~~~~a~~~g~---~v~git~s~~q~~~a~~~~~~~~l~~~v~~-~~~d~  120 (291)
T d1kpia_          47 YAKRKLALDKLNLEPG--MTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEV-RIQGW  120 (291)
T ss_dssp             HHHHHHHHHTTCCCTT--CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHSCCSSCEEE-EECCG
T ss_pred             HHHHHHHHHhcCCCCC--CEEEEecCcchHHHHHHHHhcCc---ceeeccchHHHHHHHHHHHHhhccchhhhh-hhhcc
Confidence            4558889999998777  69999999999999999874 54   456889999998877644    55422221 22345


Q ss_pred             CCCCCceeeeeeccccccc
Q 038698          262 PYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       262 PFpd~SFDlV~cs~~Li~W  280 (283)
                      ++++++||.|+|-.++-+.
T Consensus       121 ~~~~~~fD~i~sie~~eH~  139 (291)
T d1kpia_         121 EEFDEPVDRIVSLGAFEHF  139 (291)
T ss_dssp             GGCCCCCSEEEEESCGGGT
T ss_pred             cccccccceEeechhHHhc
Confidence            7889999999999988654

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.94  E-value=6.1e-10  Score=96.48  Aligned_cols=72  Identities=15%  Similarity=0.124  Sum_probs=58.0

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCCCC-CCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHLPY-PSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rLPF-pd~SFDlV~cs~~L  277 (283)
                      .+|||||||+|..+..+++.+..  .+.|+|+++.|++.|.+|    +.  .+.+.++|+..+++ .+++||+|+|..++
T Consensus        26 ~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l  103 (252)
T d1ri5a_          26 DSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF  103 (252)
T ss_dssp             CEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred             CEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEccee
Confidence            58999999999998888886542  357899999999998765    22  35577788888887 57899999999887


Q ss_pred             c
Q 038698          278 I  278 (283)
Q Consensus       278 i  278 (283)
                      .
T Consensus       104 ~  104 (252)
T d1ri5a_         104 H  104 (252)
T ss_dssp             G
T ss_pred             e
Confidence            3

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.1e-09  Score=91.94  Aligned_cols=87  Identities=17%  Similarity=0.101  Sum_probs=66.0

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC--------------------
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG--------------------  248 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg--------------------  248 (283)
                      .++.+.+.++...+  .+|||+|||+|..+.+|++++.   ++.++|+|+.+|+.|.++.                    
T Consensus        33 l~~~~~~~l~~~~~--~rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~  107 (229)
T d2bzga1          33 LKKHLDTFLKGKSG--LRVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKS  107 (229)
T ss_dssp             HHHHHHHHHTTCCS--CEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred             HHHHHHHhcCCCCC--CEEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeee
Confidence            34556666665444  5899999999999999999865   4678999999998887652                    


Q ss_pred             --CCeEEEeccccCC-CCCCCceeeeeeccccccc
Q 038698          249 --VPAVIGVLGTIHL-PYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       249 --~~a~~~v~da~rL-PFpd~SFDlV~cs~~Li~W  280 (283)
                        ....+.+.|...| |+.+++||+|+...++...
T Consensus       108 ~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~  142 (229)
T d2bzga1         108 SSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAI  142 (229)
T ss_dssp             TTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTS
T ss_pred             cCCcEEEEEcchhhccccccCceeEEEEEEEEEec
Confidence              1234555666666 5788999999999888654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.89  E-value=1.2e-09  Score=93.92  Aligned_cols=88  Identities=9%  Similarity=0.038  Sum_probs=65.7

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCC
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLP  262 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLP  262 (283)
                      +....+.+.+.+++|  .+|||||||+|++++.|++.--....+..+|+++++++.|.++    +.. ..+...+...++
T Consensus        62 ~~~a~~l~~l~l~~g--~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~  139 (213)
T d1dl5a1          62 SLMALFMEWVGLDKG--MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV  139 (213)
T ss_dssp             HHHHHHHHHTTCCTT--CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred             hhhHHHHHhhhcccc--ceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc
Confidence            345567788888766  6999999999999998887411112355678888888887654    443 445566788888


Q ss_pred             CCCCceeeeeecccc
Q 038698          263 YPSRAFDMAQCSRCL  277 (283)
Q Consensus       263 Fpd~SFDlV~cs~~L  277 (283)
                      +.+++||+|++..++
T Consensus       140 ~~~~~fD~I~~~~~~  154 (213)
T d1dl5a1         140 PEFSPYDVIFVTVGV  154 (213)
T ss_dssp             GGGCCEEEEEECSBB
T ss_pred             ccccchhhhhhhccH
Confidence            899999999998776

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.87  E-value=1.5e-09  Score=97.17  Aligned_cols=86  Identities=17%  Similarity=0.122  Sum_probs=65.1

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc----CCC--eEEEecccc
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTI  259 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~  259 (283)
                      ...++.|.+.+.+++|  .+|||||||.|.++.+++++ +.   .+.+++++++|++.|.++    |+.  ..+...+..
T Consensus        38 ~~k~~~~~~~l~l~~g--~~VLDiGCG~G~~a~~~a~~~g~---~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~  112 (280)
T d2fk8a1          38 YAKVDLNLDKLDLKPG--MTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE  112 (280)
T ss_dssp             HHHHHHHHTTSCCCTT--CEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG
T ss_pred             HHHHHHHHHHcCCCCC--CEEEEecCCchHHHHHHHHhCce---eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhh
Confidence            4457888888888777  69999999999999999876 43   567889999999888765    543  233333433


Q ss_pred             CCCCCCCceeeeeeccccccc
Q 038698          260 HLPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       260 rLPFpd~SFDlV~cs~~Li~W  280 (283)
                      .   .+++||.|+|..++-+.
T Consensus       113 ~---~~~~fD~i~si~~~eh~  130 (280)
T d2fk8a1         113 D---FAEPVDRIVSIEAFEHF  130 (280)
T ss_dssp             G---CCCCCSEEEEESCGGGT
T ss_pred             h---hccchhhhhHhhHHHHh
Confidence            3   35789999999998665

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.83  E-value=2.5e-09  Score=96.41  Aligned_cols=87  Identities=15%  Similarity=0.125  Sum_probs=66.7

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIH  260 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~r  260 (283)
                      ...++.|.+.+.+++|  .+|||||||.|.++.+++++-  +..+.++++|++|++.|.++    |.  ...+..+|...
T Consensus        48 ~~k~~~~~~~l~l~~G--~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~  123 (285)
T d1kpga_          48 IAKIDLALGKLGLQPG--MTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ  123 (285)
T ss_dssp             HHHHHHHHTTTTCCTT--CEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG
T ss_pred             HHHHHHHHHHcCCCCC--CEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc
Confidence            5558899999998777  699999999999999988851  23567889999999888654    33  23455566666


Q ss_pred             CCCCCCceeeeeeccccccc
Q 038698          261 LPYPSRAFDMAQCSRCLIPW  280 (283)
Q Consensus       261 LPFpd~SFDlV~cs~~Li~W  280 (283)
                      +|   ++||.|++-.++-+.
T Consensus       124 ~~---~~fD~i~si~~~eh~  140 (285)
T d1kpga_         124 FD---EPVDRIVSIGAFEHF  140 (285)
T ss_dssp             CC---CCCSEEEEESCGGGT
T ss_pred             cc---ccccceeeehhhhhc
Confidence            64   689999998877554

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.82  E-value=1.8e-09  Score=90.02  Aligned_cols=83  Identities=13%  Similarity=0.060  Sum_probs=65.3

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHLPY  263 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rLPF  263 (283)
                      -..|...+.+..|  .+|||+|||+|.++..|+++..   .+.++|.++++++.|+++    |+  ...+..+++..+++
T Consensus        22 r~~il~~l~~~~g--~~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~   96 (186)
T d1l3ia_          22 RCLIMCLAEPGKN--DVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC   96 (186)
T ss_dssp             HHHHHHHHCCCTT--CEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT
T ss_pred             HHHHHHhcCCCCC--CEEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccc
Confidence            3566677777655  6999999999999999988643   456789999998888653    55  34566778888999


Q ss_pred             CCCceeeeeecccc
Q 038698          264 PSRAFDMAQCSRCL  277 (283)
Q Consensus       264 pd~SFDlV~cs~~L  277 (283)
                      +..+||+|++....
T Consensus        97 ~~~~~D~v~~~~~~  110 (186)
T d1l3ia_          97 KIPDIDIAVVGGSG  110 (186)
T ss_dssp             TSCCEEEEEESCCT
T ss_pred             ccCCcCEEEEeCcc
Confidence            99999999998654

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.72  E-value=2.8e-09  Score=94.09  Aligned_cols=83  Identities=20%  Similarity=0.300  Sum_probs=58.0

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-----eEEEecc
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-----AVIGVLG  257 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-----a~~~v~d  257 (283)
                      +.|.+.|.++++...+  .+|||||||+|.++..|++++.   .+.++|+|++|++.|.++    +..     ..+..++
T Consensus        42 ~~~~~~l~~~l~~~~~--~~vLD~GcG~G~~~~~la~~g~---~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~  116 (292)
T d1xvaa_          42 AEYKAWLLGLLRQHGC--HRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN  116 (292)
T ss_dssp             HHHHHHHHHHHHHTTC--CEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC
T ss_pred             HHHHHHHHHHhhhcCC--CEEEEecCCCcHHHHHHHHcCC---eeeeccCchHHHHHHHHHHHhcccccccceeeeeecc
Confidence            4566667777765433  6899999999999999999864   567899999999988654    222     1222222


Q ss_pred             c----cCCCCCCCceeeeeecc
Q 038698          258 T----IHLPYPSRAFDMAQCSR  275 (283)
Q Consensus       258 a----~rLPFpd~SFDlV~cs~  275 (283)
                      .    ..+|+ .++||+|+|..
T Consensus       117 ~~~~~~~~~~-~~~fd~v~~~~  137 (292)
T d1xvaa_         117 WLTLDKDVPA-GDGFDAVICLG  137 (292)
T ss_dssp             GGGHHHHSCC-TTCEEEEEECS
T ss_pred             ccccccccCC-CCCceEEEEec
Confidence            2    22344 46899999865

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=5.9e-09  Score=91.00  Aligned_cols=76  Identities=11%  Similarity=0.048  Sum_probs=53.5

Q ss_pred             cEEeecCCCccHHHHHHhhc-----CCeeEeeccccChHHHHHHHHHc--C---CC-eE--EEeccc------cCCCCCC
Q 038698          205 RTALDTGCGVASWGAYLLKR-----NVLTMSFAPRDNHEAQVQFALER--G---VP-AV--IGVLGT------IHLPYPS  265 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r-----~v~~~sla~~D~s~a~vq~A~er--g---~~-a~--~~v~da------~rLPFpd  265 (283)
                      -+|||||||+|.++..|++.     .-....+.++|.++.+++.|.++  .   ++ +.  +.....      ...++++
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL  121 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence            47999999999988777653     11234567899999999988765  1   12 22  222222      2457899


Q ss_pred             Cceeeeeecccccccc
Q 038698          266 RAFDMAQCSRCLIPWT  281 (283)
Q Consensus       266 ~SFDlV~cs~~Li~W~  281 (283)
                      ++||+|+|..++ +|.
T Consensus       122 ~~fD~I~~~~~l-~~~  136 (280)
T d1jqea_         122 QKWDFIHMIQML-YYV  136 (280)
T ss_dssp             CCEEEEEEESCG-GGC
T ss_pred             CceeEEEEccce-ecC
Confidence            999999999998 554

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=9.1e-09  Score=89.27  Aligned_cols=86  Identities=14%  Similarity=0.064  Sum_probs=61.4

Q ss_pred             HHHHHhhC--CCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC------CeEEEecc
Q 038698          190 IDELASVI--PIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV------PAVIGVLG  257 (283)
Q Consensus       190 id~I~~~l--~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~------~a~~~v~d  257 (283)
                      .-.|.++|  .+++|  .+|||||||+|++++.|++.--....+.++|.++++++.|+++    +.      ...+..+|
T Consensus        63 ~a~~le~L~~~l~~g--~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD  140 (224)
T d1i1na_          63 HAYALELLFDQLHEG--AKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD  140 (224)
T ss_dssp             HHHHHHHTTTTSCTT--CEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC
T ss_pred             HHHHHHHHhhccCCC--CeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEee
Confidence            34556666  34445  6999999999999988887411122456778888888777532    21      24456678


Q ss_pred             ccCCCCCCCceeeeeecccc
Q 038698          258 TIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       258 a~rLPFpd~SFDlV~cs~~L  277 (283)
                      +..++++++.||+|++..++
T Consensus       141 ~~~~~~~~~~fD~I~~~~~~  160 (224)
T d1i1na_         141 GRMGYAEEAPYDAIHVGAAA  160 (224)
T ss_dssp             GGGCCGGGCCEEEEEECSBB
T ss_pred             cccccchhhhhhhhhhhcch
Confidence            88999999999999998876

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=3.2e-08  Score=88.33  Aligned_cols=86  Identities=16%  Similarity=0.144  Sum_probs=62.6

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHH---HHcCC--CeEEEeccccCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFA---LERGV--PAVIGVLGTIHL  261 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A---~erg~--~a~~~v~da~rL  261 (283)
                      +.|.+.|.+......|  .+|||||||+|.++..+++.+..  .+.++|.++.+.+.+   .+.+.  ...+..++++.+
T Consensus        21 ~~y~~ai~~~~~~~~~--~~VLDiGcG~G~lsl~aa~~Ga~--~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l   96 (311)
T d2fyta1          21 ESYRDFIYQNPHIFKD--KVVLDVGCGTGILSMFAAKAGAK--KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV   96 (311)
T ss_dssp             HHHHHHHHHCGGGTTT--CEEEEETCTTSHHHHHHHHTTCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS
T ss_pred             HHHHHHHHhccccCCc--CEEEEECCCCCHHHHHHHHcCCC--EEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHh
Confidence            6788888877665444  68999999999999988887643  245566666554322   23343  355667789999


Q ss_pred             CCCCCceeeeeeccc
Q 038698          262 PYPSRAFDMAQCSRC  276 (283)
Q Consensus       262 PFpd~SFDlV~cs~~  276 (283)
                      ++++.+||+|+|...
T Consensus        97 ~~~~~~~D~Ivse~~  111 (311)
T d2fyta1          97 HLPVEKVDVIISEWM  111 (311)
T ss_dssp             CCSCSCEEEEEECCC
T ss_pred             cCccccceEEEEeee
Confidence            999999999998643

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.69  E-value=3e-09  Score=94.47  Aligned_cols=79  Identities=19%  Similarity=0.098  Sum_probs=57.9

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCCeEEEeccccCCCCC
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVPAVIGVLGTIHLPYP  264 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~a~~~v~da~rLPFp  264 (283)
                      -++.|.+.+.  .|  .+|||+|||+|.++..+++.+.   .+.++|+++.+++.|++    .++...+..++... +++
T Consensus       110 ~l~~l~~~~~--~g--~~VLDiGcGsG~l~i~aa~~g~---~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~  181 (254)
T d2nxca1         110 ALKALARHLR--PG--DKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALP  181 (254)
T ss_dssp             HHHHHHHHCC--TT--CEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGG
T ss_pred             HHHHHHhhcC--cc--CEEEEcccchhHHHHHHHhcCC---EEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-ccc
Confidence            3555655543  24  6899999999999998888764   34578888888877764    36776666666543 577


Q ss_pred             CCceeeeeecc
Q 038698          265 SRAFDMAQCSR  275 (283)
Q Consensus       265 d~SFDlV~cs~  275 (283)
                      +++||+|+|+-
T Consensus       182 ~~~fD~V~ani  192 (254)
T d2nxca1         182 FGPFDLLVANL  192 (254)
T ss_dssp             GCCEEEEEEEC
T ss_pred             ccccchhhhcc
Confidence            89999999874

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.67  E-value=2e-08  Score=89.91  Aligned_cols=88  Identities=17%  Similarity=0.200  Sum_probs=67.6

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc------C--CCeEEEeccccC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER------G--VPAVIGVLGTIH  260 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er------g--~~a~~~v~da~r  260 (283)
                      +..|..++.+.+|  .+|||+|||+|+++..|++. +..+ .+..+|+++++++.|++.      +  ....+.+.|...
T Consensus        85 ~s~Ii~~l~i~PG--~~VLE~G~GsG~lt~~La~~vgp~G-~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~  161 (264)
T d1i9ga_          85 AAQIVHEGDIFPG--ARVLEAGAGSGALTLSLLRAVGPAG-QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD  161 (264)
T ss_dssp             HHHHHHHTTCCTT--CEEEEECCTTSHHHHHHHHHHCTTS-EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred             HHHHHHHhCCCCC--CEEEecCcCCcHHHHHHHHhhCCCc-EEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc
Confidence            4567778888777  69999999999999999885 3222 466789999998888652      1  235567778888


Q ss_pred             CCCCCCceeeeeecccccccc
Q 038698          261 LPYPSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       261 LPFpd~SFDlV~cs~~Li~W~  281 (283)
                      .+|++++||.|++. .-.||.
T Consensus       162 ~~~~~~~fDaV~ld-lp~P~~  181 (264)
T d1i9ga_         162 SELPDGSVDRAVLD-MLAPWE  181 (264)
T ss_dssp             CCCCTTCEEEEEEE-SSCGGG
T ss_pred             ccccCCCcceEEEe-cCCHHH
Confidence            99999999999974 456774

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=8e-09  Score=87.95  Aligned_cols=85  Identities=13%  Similarity=0.032  Sum_probs=57.5

Q ss_pred             HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc--CCCeE----------------
Q 038698          191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER--GVPAV----------------  252 (283)
Q Consensus       191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er--g~~a~----------------  252 (283)
                      +.+.+.+........+|||||||+|.++..++..+.  ..+.++|+++.+++.|+++  ..+..                
T Consensus        39 ~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~--~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (257)
T d2a14a1          39 ECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN  116 (257)
T ss_dssp             HHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTC
T ss_pred             HHHHHHhcccCCCCCEEEEECCCCCHhHHHHhcccc--CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccc
Confidence            445555543222347899999999998877776543  3578899999999988754  11100                


Q ss_pred             -----------------EE----eccccCCCCCCCceeeeeecccc
Q 038698          253 -----------------IG----VLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       253 -----------------~~----v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                                       ..    ..+....|+++++||+|+|..|+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l  162 (257)
T d2a14a1         117 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAM  162 (257)
T ss_dssp             GGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCH
T ss_pred             cchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhH
Confidence                             00    01233468999999999998887

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.9e-08  Score=86.22  Aligned_cols=82  Identities=15%  Similarity=0.114  Sum_probs=58.5

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC----CCeEEEecc--ccC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG----VPAVIGVLG--TIH  260 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg----~~a~~~v~d--a~r  260 (283)
                      ..|.+.+.+.+.. .|  .+|||||||+|.++.+|+++..  .++.++|+++.+++.|+++.    ....+...+  ...
T Consensus        40 ~~~~~~la~~~~~-~g--~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  114 (229)
T d1zx0a1          40 TPYMHALAAAASS-KG--GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA  114 (229)
T ss_dssp             HHHHHHHHHHHTT-TC--EEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG
T ss_pred             HHHHHHHHHhhcc-CC--CeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccc
Confidence            3456666666654 24  5899999999999999988743  35778999999999988652    222333333  335


Q ss_pred             CCCCCCceeeeee
Q 038698          261 LPYPSRAFDMAQC  273 (283)
Q Consensus       261 LPFpd~SFDlV~c  273 (283)
                      .++++++||.|+.
T Consensus       115 ~~~~~~~fD~i~f  127 (229)
T d1zx0a1         115 PTLPDGHFDGILY  127 (229)
T ss_dssp             GGSCTTCEEEEEE
T ss_pred             cccccccccceee
Confidence            5789999999873

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=4.9e-08  Score=88.00  Aligned_cols=86  Identities=14%  Similarity=0.136  Sum_probs=58.9

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHH----HHcCC--CeEEEeccccC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFA----LERGV--PAVIGVLGTIH  260 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A----~erg~--~a~~~v~da~r  260 (283)
                      ..|.+.|.+.+....|  .+|||||||+|.++..+++++..  .+.++|.++ +++.|    .+.+.  ...+..++...
T Consensus        24 ~~y~~aI~~~~~~~~~--~~VLDlGcGtG~ls~~aa~~Ga~--~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~   98 (328)
T d1g6q1_          24 LSYRNAIIQNKDLFKD--KIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLED   98 (328)
T ss_dssp             HHHHHHHHHHHHHHTT--CEEEEETCTTSHHHHHHHHTCCS--EEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             HHHHHHHHhccccCCc--CEEEEeCCCCCHHHHHHHHhCCC--EEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhh
Confidence            5677777665543334  68999999999999888887643  234455554 22333    33454  35566678999


Q ss_pred             CCCCCCceeeeeecccc
Q 038698          261 LPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       261 LPFpd~SFDlV~cs~~L  277 (283)
                      +++++++||+|+|..+.
T Consensus        99 l~~~~~~~D~i~se~~~  115 (328)
T d1g6q1_          99 VHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             SCCSSSCEEEEEECCCB
T ss_pred             ccCcccceeEEEEEecc
Confidence            99999999999996554

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=8e-08  Score=86.25  Aligned_cols=87  Identities=11%  Similarity=0.072  Sum_probs=57.9

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHH---HHHHHHHcCCC--eEEEeccccCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEA---QVQFALERGVP--AVIGVLGTIHL  261 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a---~vq~A~erg~~--a~~~v~da~rL  261 (283)
                      ..|.+.|.+......|  ++|||||||+|.++..+++.+..  .+.++|.++.   ..+.+...+..  ..+...++..+
T Consensus        19 ~~y~~ai~~~~~~~~~--~~VLDiGcG~G~ls~~aa~~Ga~--~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~   94 (316)
T d1oria_          19 LTYRNSMFHNRHLFKD--KVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV   94 (316)
T ss_dssp             HHHHHHHHTCHHHHTT--CEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred             HHHHHHHHhccccCCc--CEEEEEecCCcHHHHHHHHhCCC--EEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHc
Confidence            5677777654433234  68999999999999888887532  1233344432   22333334543  55666789999


Q ss_pred             CCCCCceeeeeecccc
Q 038698          262 PYPSRAFDMAQCSRCL  277 (283)
Q Consensus       262 PFpd~SFDlV~cs~~L  277 (283)
                      +++.++||+|+|..+.
T Consensus        95 ~~~~~~~D~ivs~~~~  110 (316)
T d1oria_          95 ELPVEKVDIIISEWMG  110 (316)
T ss_dssp             CCSSSCEEEEEECCCB
T ss_pred             ccccceeEEEeeeeee
Confidence            9999999999986543

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.55  E-value=3.4e-08  Score=84.74  Aligned_cols=76  Identities=11%  Similarity=0.152  Sum_probs=59.4

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC-eEEEeccccCCC--CCCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP-AVIGVLGTIHLP--YPSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~-a~~~v~da~rLP--Fpd~SFDlV~cs~~L  277 (283)
                      ..|||||||+|.++..|++..... .+.|+|+++.++..|.+    .++. +.+..+++..|+  |++++||.|+.....
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~~-~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~  109 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPDI-NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD  109 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTS-EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred             ceEEEEEecCcHHHHHHHHhCCCC-cEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence            479999999999999999875433 56788999998877643    3664 556677888887  999999999876654


Q ss_pred             ccccc
Q 038698          278 IPWTS  282 (283)
Q Consensus       278 i~W~~  282 (283)
                       ||.+
T Consensus       110 -P~~k  113 (204)
T d2fcaa1         110 -PWPK  113 (204)
T ss_dssp             -CCCS
T ss_pred             -ccch
Confidence             7753

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.50  E-value=1.4e-07  Score=81.77  Aligned_cols=86  Identities=24%  Similarity=0.309  Sum_probs=54.7

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH----HcCCC--eEEEeccccCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL----ERGVP--AVIGVLGTIHLPY  263 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~----erg~~--a~~~v~da~rLPF  263 (283)
                      .+.|.+.++.  .+.++|||||||+|.++..|+++... +.+.++|+ +++++.|.    +.+..  ..+..+|... +.
T Consensus        69 ~~~~~~~~d~--~~~~~VLDvGcG~G~~~~~la~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~  143 (253)
T d1tw3a2          69 FDAPAAAYDW--TNVRHVLDVGGGKGGFAAAIARRAPH-VSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PL  143 (253)
T ss_dssp             THHHHHHSCC--TTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CC
T ss_pred             HHHHHhhcCC--ccCCEEEEeCCCCCHHHHHHHHhcce-eEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchh-hc
Confidence            3455666665  34579999999999999999987322 12344555 23444443    33443  4455555432 33


Q ss_pred             CCCceeeeeecccccccc
Q 038698          264 PSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       264 pd~SFDlV~cs~~Li~W~  281 (283)
                      + .+||+|+++.+|-+|.
T Consensus       144 ~-~~~D~v~~~~vlh~~~  160 (253)
T d1tw3a2         144 P-RKADAIILSFVLLNWP  160 (253)
T ss_dssp             S-SCEEEEEEESCGGGSC
T ss_pred             c-cchhheeeccccccCC
Confidence            3 5799999999998774

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.48  E-value=1.9e-07  Score=79.96  Aligned_cols=65  Identities=14%  Similarity=0.059  Sum_probs=51.8

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeec
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCS  274 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs  274 (283)
                      .+|||+|||+|.++..++.++..  .+.++|+++.+++.|++.-....+...|..+++   +.||+|+|+
T Consensus        50 k~VLDlGcGtG~l~i~a~~~ga~--~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~N  114 (197)
T d1ne2a_          50 RSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMN  114 (197)
T ss_dssp             SEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEEC
T ss_pred             CEEEEeCCCCcHHHHHHHHcCCC--cccccccCHHHHHHHHHccccccEEEEehhhcC---CcceEEEeC
Confidence            69999999999998777776643  467889999999988876445567677877764   789999986

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.47  E-value=1.1e-07  Score=81.50  Aligned_cols=76  Identities=18%  Similarity=0.298  Sum_probs=58.6

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC-eEEEeccccCCC--CCCCceeeeeecccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP-AVIGVLGTIHLP--YPSRAFDMAQCSRCL  277 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~-a~~~v~da~rLP--Fpd~SFDlV~cs~~L  277 (283)
                      ..|||||||+|.++..|++..... .+.|+|+++.++..|++    .+++ +.+..+++..|+  |+++++|.|++.- -
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~~-~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f-P  110 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPDI-NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF-S  110 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES-C
T ss_pred             CeEEEEeccCCHHHHHHHHHCCCC-ceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc-c
Confidence            479999999999999999875433 56788999988877654    3664 556667887886  8999999999765 3


Q ss_pred             ccccc
Q 038698          278 IPWTS  282 (283)
Q Consensus       278 i~W~~  282 (283)
                      .||..
T Consensus       111 dPw~K  115 (204)
T d1yzha1         111 DPWPK  115 (204)
T ss_dssp             CCCCS
T ss_pred             ccccc
Confidence            47753

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.47  E-value=1.5e-07  Score=81.94  Aligned_cols=82  Identities=10%  Similarity=0.044  Sum_probs=60.7

Q ss_pred             HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc---CCCeEEEeccccCCCCCCCc
Q 038698          191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER---GVPAVIGVLGTIHLPYPSRA  267 (283)
Q Consensus       191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er---g~~a~~~v~da~rLPFpd~S  267 (283)
                      -.|.+.+.+.+|  .+|||||||+|++++.|++..-   .+..+|.+++.++.|.++   ..+..+..++...-...++.
T Consensus        60 a~ml~~L~l~~g--~~VLdIG~GsGy~ta~La~l~~---~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~p  134 (224)
T d1vbfa_          60 IFMLDELDLHKG--QKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKP  134 (224)
T ss_dssp             HHHHHHTTCCTT--CEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCC
T ss_pred             HHHHHHhhhccc--ceEEEecCCCCHHHHHHHHHhc---ccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhh
Confidence            356777887766  6999999999999999888643   345678888888888765   23445556665555556788


Q ss_pred             eeeeeecccc
Q 038698          268 FDMAQCSRCL  277 (283)
Q Consensus       268 FDlV~cs~~L  277 (283)
                      ||.|++..++
T Consensus       135 fD~Iiv~~a~  144 (224)
T d1vbfa_         135 YDRVVVWATA  144 (224)
T ss_dssp             EEEEEESSBB
T ss_pred             HHHHHhhcch
Confidence            9999998775

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.44  E-value=8.8e-08  Score=83.38  Aligned_cols=83  Identities=10%  Similarity=-0.053  Sum_probs=57.7

Q ss_pred             hhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc--CCC-eEEEecc-ccCCCCCCCceee
Q 038698          195 SVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER--GVP-AVIGVLG-TIHLPYPSRAFDM  270 (283)
Q Consensus       195 ~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er--g~~-a~~~v~d-a~rLPFpd~SFDl  270 (283)
                      +.+++++|  .+|||+|||+|+++..|++.... ..+.++|+++.+++.|.++  ..+ ......+ ....++.+..||+
T Consensus        68 ~~l~ikpG--~~VLDlGcGsG~~~~~la~~~~~-g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v  144 (230)
T d1g8sa_          68 KVMPIKRD--SKILYLGASAGTTPSHVADIADK-GIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKV  144 (230)
T ss_dssp             CCCCCCTT--CEEEEESCCSSHHHHHHHHHTTT-SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCE
T ss_pred             HhCCCCCC--CEEEEeCEEcCHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCccccccccee
Confidence            45566666  69999999999999999986332 3578899999999888765  222 2222233 3344578888888


Q ss_pred             eeeccccccc
Q 038698          271 AQCSRCLIPW  280 (283)
Q Consensus       271 V~cs~~Li~W  280 (283)
                      +++...+.++
T Consensus       145 ~~i~~~~~~~  154 (230)
T d1g8sa_         145 DVIYEDVAQP  154 (230)
T ss_dssp             EEEEECCCST
T ss_pred             EEeeccccch
Confidence            7776665433

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.43  E-value=1.6e-07  Score=83.14  Aligned_cols=85  Identities=14%  Similarity=0.249  Sum_probs=58.4

Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc----C-C-CeEEEeccccCCCCC
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER----G-V-PAVIGVLGTIHLPYP  264 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er----g-~-~a~~~v~da~rLPFp  264 (283)
                      .|..++.+.+|  .+|||+|||+|+++.+|++. +.. ..+..+|.++++++.|+++    + . +..+...|.... ++
T Consensus        76 ~Ii~~l~i~pG--~rVLEiG~GsG~lt~~la~~v~~~-g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~  151 (250)
T d1yb2a1          76 YIIMRCGLRPG--MDILEVGVGSGNMSSYILYALNGK-GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-IS  151 (250)
T ss_dssp             -----CCCCTT--CEEEEECCTTSHHHHHHHHHHTTS-SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CC
T ss_pred             HHHHHcCCCCc--CEEEEeeeeCcHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cc
Confidence            45566677667  69999999999999998875 222 2466789999999888753    2 2 344555666554 68


Q ss_pred             CCceeeeeecccccccc
Q 038698          265 SRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       265 d~SFDlV~cs~~Li~W~  281 (283)
                      +++||+|++. ...+|.
T Consensus       152 ~~~fD~V~ld-~p~p~~  167 (250)
T d1yb2a1         152 DQMYDAVIAD-IPDPWN  167 (250)
T ss_dssp             SCCEEEEEEC-CSCGGG
T ss_pred             cceeeeeeec-CCchHH
Confidence            8999999974 455664

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.43  E-value=1.8e-07  Score=81.75  Aligned_cols=86  Identities=20%  Similarity=0.206  Sum_probs=55.8

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC--eEEEeccccCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP--AVIGVLGTIHLPY  263 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~--a~~~v~da~rLPF  263 (283)
                      ++.|.+.++..  +.++|||||||+|.++..|+++... +.+...|+ ++++..|++    .+..  ..+...+.. -|.
T Consensus        70 ~~~~~~~~d~~--~~~~vlDvG~G~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~-~~~  144 (256)
T d1qzza2          70 YEAPADAYDWS--AVRHVLDVGGGNGGMLAAIALRAPH-LRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFF-KPL  144 (256)
T ss_dssp             THHHHHTSCCT--TCCEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCC
T ss_pred             HHHHHhcCCCc--cCCEEEEECCCCCHHHHHHHHhhcC-cEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecc-ccc
Confidence            34555666553  3479999999999999999987322 24456676 445555542    2443  334333432 255


Q ss_pred             CCCceeeeeecccccccc
Q 038698          264 PSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       264 pd~SFDlV~cs~~Li~W~  281 (283)
                      | ..||+|++..+|-+|.
T Consensus       145 p-~~~D~v~~~~vLh~~~  161 (256)
T d1qzza2         145 P-VTADVVLLSFVLLNWS  161 (256)
T ss_dssp             S-CCEEEEEEESCGGGSC
T ss_pred             c-ccchhhhccccccccC
Confidence            5 4599999999998884

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.40  E-value=2e-07  Score=79.81  Aligned_cols=73  Identities=8%  Similarity=-0.070  Sum_probs=51.1

Q ss_pred             CCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc---CCCeEEEeccccCCCCCCCceeeee
Q 038698          197 IPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER---GVPAVIGVLGTIHLPYPSRAFDMAQ  272 (283)
Q Consensus       197 l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er---g~~a~~~v~da~rLPFpd~SFDlV~  272 (283)
                      +++++|  .+|||+|||+|+++..|++.-..+ .+.++|+++.+++.|.++   .....+..+++...+..+..+|.|.
T Consensus        52 l~lkpg--~~VLDlGcG~G~~~~~la~~v~~g-~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd  127 (209)
T d1nt2a_          52 LKLRGD--ERVLYLGAASGTTVSHLADIVDEG-IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVD  127 (209)
T ss_dssp             CCCCSS--CEEEEETCTTSHHHHHHHHHTTTS-EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEE
T ss_pred             CCCCCC--CEEEEeCCcCCHHHHHHHHhccCC-eEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEE
Confidence            566666  699999999999999998863222 578899999998877643   2234444556666666666555553

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.38  E-value=4.2e-07  Score=77.16  Aligned_cols=77  Identities=13%  Similarity=0.053  Sum_probs=56.0

Q ss_pred             HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCCCc
Q 038698          192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPSRA  267 (283)
Q Consensus       192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd~S  267 (283)
                      .+...++...|  .+|||+|||+|.++..++.++..  .+.++|+++.+++.|++.    ++...+...+...+   +..
T Consensus        37 ~~~~~~~dl~g--~~vLDlg~GtG~l~i~a~~~g~~--~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~  109 (201)
T d1wy7a1          37 WLAYSLGDIEG--KVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSR  109 (201)
T ss_dssp             HHHHHTTSSTT--CEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCC
T ss_pred             HHHHhcCCCCC--CEEEECcCcchHHHHHHHHcCCC--EEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCc
Confidence            44455554345  58999999999999888877642  457889999988888753    55666666676664   467


Q ss_pred             eeeeeecc
Q 038698          268 FDMAQCSR  275 (283)
Q Consensus       268 FDlV~cs~  275 (283)
                      ||+|+++-
T Consensus       110 fD~Vi~nP  117 (201)
T d1wy7a1         110 VDIVIMNP  117 (201)
T ss_dssp             CSEEEECC
T ss_pred             CcEEEEcC
Confidence            99999864

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.8e-07  Score=84.81  Aligned_cols=85  Identities=11%  Similarity=0.092  Sum_probs=60.8

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-----------C---CCeE
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-----------G---VPAV  252 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-----------g---~~a~  252 (283)
                      -..+++|.+.+.+.++  .+|||||||+|.++..++...- ...+.|+|+++.+++.|.+.           |   .+..
T Consensus       137 ~~~~~~~~~~~~l~~~--~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~  213 (328)
T d1nw3a_         137 FDLVAQMIDEIKMTDD--DLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT  213 (328)
T ss_dssp             HHHHHHHHHHSCCCTT--CEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred             HHHHHHHHHHcCCCCC--CEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceE
Confidence            3456777888887655  6999999999999988776421 12356788888887766431           2   2456


Q ss_pred             EEeccccCCCCCCCcee--eeeec
Q 038698          253 IGVLGTIHLPYPSRAFD--MAQCS  274 (283)
Q Consensus       253 ~~v~da~rLPFpd~SFD--lV~cs  274 (283)
                      +..+|+..+||.+..||  +|+++
T Consensus       214 ~~~gd~~~~~~~~~~~~advi~~~  237 (328)
T d1nw3a_         214 LERGDFLSEEWRERIANTSVIFVN  237 (328)
T ss_dssp             EEECCTTSHHHHHHHHHCSEEEEC
T ss_pred             EEECcccccccccccCcceEEEEc
Confidence            77789999999998875  55554

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.24  E-value=7.2e-07  Score=77.28  Aligned_cols=85  Identities=13%  Similarity=0.101  Sum_probs=58.8

Q ss_pred             HHHHhhC--CCCCCCccEEeecCCCccHHHHHHhhc----CC-eeEeeccccChHHHHHHHHHc---------CC-CeEE
Q 038698          191 DELASVI--PIKDGSVRTALDTGCGVASWGAYLLKR----NV-LTMSFAPRDNHEAQVQFALER---------GV-PAVI  253 (283)
Q Consensus       191 d~I~~~l--~~~~g~~r~VLDVGCGtGsfaa~L~~r----~v-~~~sla~~D~s~a~vq~A~er---------g~-~a~~  253 (283)
                      -.+.+.|  .+.+|  .+|||||||+|++++.|.+.    ++ ....+..+|.+++.+.+|.++         +. +..+
T Consensus        68 a~~l~~L~~~l~~g--~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~  145 (223)
T d1r18a_          68 AFALEYLRDHLKPG--ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI  145 (223)
T ss_dssp             HHHHHHTTTTCCTT--CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             HHHHHHHhhccCCC--CeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEE
Confidence            3555665  34445  69999999999999888763    21 112345667777777766432         22 3556


Q ss_pred             EeccccCCCCCCCceeeeeecccc
Q 038698          254 GVLGTIHLPYPSRAFDMAQCSRCL  277 (283)
Q Consensus       254 ~v~da~rLPFpd~SFDlV~cs~~L  277 (283)
                      ...|......+.+.||.|++..++
T Consensus       146 ~~~d~~~~~~~~~~fD~Iiv~~a~  169 (223)
T d1r18a_         146 VEGDGRKGYPPNAPYNAIHVGAAA  169 (223)
T ss_dssp             EESCGGGCCGGGCSEEEEEECSCB
T ss_pred             EecccccccccccceeeEEEEeec
Confidence            667888877888999999998776

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=2e-06  Score=76.82  Aligned_cols=85  Identities=14%  Similarity=0.137  Sum_probs=58.6

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHL  261 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rL  261 (283)
                      +..++.+.+.+..   ...+|||+|||+|..+..|+.+... ..+.+.|+++..++.|.+.    ++. ..+...|... 
T Consensus        95 E~lv~~~l~~~~~---~~~~vlDlGtGSG~I~i~la~~~p~-~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-  169 (274)
T d2b3ta1          95 ECLVEQALARLPE---QPCRILDLGTGTGAIALALASERPD-CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-  169 (274)
T ss_dssp             HHHHHHHHHHSCS---SCCEEEEETCTTSHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-
T ss_pred             hhhhhhHhhhhcc---cccceeeeehhhhHHHHHHHhhCCc-ceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-
Confidence            4445555555443   2357999999999999888875432 3567889999998887642    554 4455555332 


Q ss_pred             CCCCCceeeeeeccc
Q 038698          262 PYPSRAFDMAQCSRC  276 (283)
Q Consensus       262 PFpd~SFDlV~cs~~  276 (283)
                      +++++.||+|+|+-=
T Consensus       170 ~~~~~~fDlIvsNPP  184 (274)
T d2b3ta1         170 ALAGQQFAMIVSNPP  184 (274)
T ss_dssp             GGTTCCEEEEEECCC
T ss_pred             ccCCCceeEEEecch
Confidence            677889999999743

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.18  E-value=1e-06  Score=76.11  Aligned_cols=83  Identities=16%  Similarity=0.158  Sum_probs=60.4

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHH----cCC-CeEEEeccccCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALE----RGV-PAVIGVLGTIHLPY  263 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~e----rg~-~a~~~v~da~rLPF  263 (283)
                      ...|.+.+.+..|  .+|||||||+|++++.|++. +.   .+..+|..+..+++|.+    .|. +..+..+|......
T Consensus        67 ~a~ml~~L~l~~g--~~VLeIGsGsGY~taila~l~g~---~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~  141 (215)
T d1jg1a_          67 VAIMLEIANLKPG--MNILEVGTGSGWNAALISEIVKT---DVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFP  141 (215)
T ss_dssp             HHHHHHHHTCCTT--CCEEEECCTTSHHHHHHHHHHCS---CEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred             HHHHHHhhccCcc--ceEEEecCCCChhHHHHHHhhCc---eeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCc
Confidence            4567777887766  69999999999999988874 31   13345666666666653    255 45566678777777


Q ss_pred             CCCceeeeeecccc
Q 038698          264 PSRAFDMAQCSRCL  277 (283)
Q Consensus       264 pd~SFDlV~cs~~L  277 (283)
                      +.+.||.|++..++
T Consensus       142 ~~~pfD~Iiv~~a~  155 (215)
T d1jg1a_         142 PKAPYDVIIVTAGA  155 (215)
T ss_dssp             GGCCEEEEEECSBB
T ss_pred             ccCcceeEEeeccc
Confidence            78999999998776

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=5.5e-07  Score=78.53  Aligned_cols=55  Identities=20%  Similarity=0.107  Sum_probs=38.2

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE  246 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e  246 (283)
                      ++.+.+.++...-...++||||||+|.+..+++.+...  .+.+.|.++.+++.|++
T Consensus        41 ~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~--~v~~~D~S~~~i~~~~~   95 (263)
T d2g72a1          41 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFE--DITMTDFLEVNRQELGR   95 (263)
T ss_dssp             HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCS--EEEEECSCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCC--eEEEEeCCHHHHHHHHH
Confidence            45566665532223479999999999887665554332  56788999999988864

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.14  E-value=2e-06  Score=76.23  Aligned_cols=88  Identities=20%  Similarity=0.271  Sum_probs=61.5

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCCCC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLPY  263 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLPF  263 (283)
                      +-.|..++.+.+|  .+|||+|||+|+++..|++.--....+.++|.++++++.|.+.    +..  ..+...+ -..+|
T Consensus        92 ~~~Ii~~l~i~pG--~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d-~~~~~  168 (266)
T d1o54a_          92 SSFIAMMLDVKEG--DRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD-ISEGF  168 (266)
T ss_dssp             HHHHHHHTTCCTT--CEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC-GGGCC
T ss_pred             HHHHHHhhCCCCC--CEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecc-ccccc
Confidence            3467788888777  6999999999999999987522223567889999999888653    442  2233333 24468


Q ss_pred             CCCceeeeeecccccccc
Q 038698          264 PSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       264 pd~SFDlV~cs~~Li~W~  281 (283)
                      ++..||.|+.. +-.+|.
T Consensus       169 ~~~~~D~V~~d-~p~p~~  185 (266)
T d1o54a_         169 DEKDVDALFLD-VPDPWN  185 (266)
T ss_dssp             SCCSEEEEEEC-CSCGGG
T ss_pred             cccceeeeEec-CCCHHH
Confidence            88999999864 344553

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2.6e-06  Score=77.73  Aligned_cols=88  Identities=18%  Similarity=0.178  Sum_probs=56.4

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc--------------C--CCeE
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER--------------G--VPAV  252 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er--------------g--~~a~  252 (283)
                      +-.|..++.+.+|  .+|||+|||+|+++..|++. +..+ .+.++|+++++++.|++.              +  -...
T Consensus        87 ~~~Il~~l~i~pG--~rVLE~GtGsG~lt~~LAr~vg~~G-~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~  163 (324)
T d2b25a1          87 INMILSMMDINPG--DTVLEAGSGSGGMSLFLSKAVGSQG-RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD  163 (324)
T ss_dssp             HHHHHHHHTCCTT--CEEEEECCTTSHHHHHHHHHHCTTC-EEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred             HHHHHHHhCCCCC--CEEEEecccccHHHHHHHHHhCCCc-EEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcccccee
Confidence            4466777777777  69999999999999999875 2222 456778888888877642              1  1233


Q ss_pred             EEeccccCC--CCCCCceeeeeecccccccc
Q 038698          253 IGVLGTIHL--PYPSRAFDMAQCSRCLIPWT  281 (283)
Q Consensus       253 ~~v~da~rL--PFpd~SFDlV~cs~~Li~W~  281 (283)
                      +...+....  .+++.+||.|+. .+..||.
T Consensus       164 ~~~~di~~~~~~~~~~~fD~V~L-D~p~P~~  193 (324)
T d2b25a1         164 FIHKDISGATEDIKSLTFDAVAL-DMLNPHV  193 (324)
T ss_dssp             EEESCTTCCC-------EEEEEE-CSSSTTT
T ss_pred             EEecchhhcccccCCCCcceEee-cCcCHHH
Confidence            444565554  357889999986 4455674

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.00  E-value=3.2e-06  Score=73.35  Aligned_cols=77  Identities=10%  Similarity=-0.064  Sum_probs=52.9

Q ss_pred             hhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc--CCC-eEEEecc---ccCCCCCCCc
Q 038698          195 SVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER--GVP-AVIGVLG---TIHLPYPSRA  267 (283)
Q Consensus       195 ~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er--g~~-a~~~v~d---a~rLPFpd~S  267 (283)
                      +.+++++|  .+|||+|||+|+++..|++. +.. ..+.++|+++.+++.+.++  ..+ ......+   .+.++.....
T Consensus        67 ~~l~i~pG--~~VLDlGaGsG~~t~~la~~VG~~-G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~  143 (227)
T d1g8aa_          67 KNFPIKPG--KSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPK  143 (227)
T ss_dssp             CCCCCCTT--CEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCC
T ss_pred             cccccCCC--CEEEEeccCCCHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccc
Confidence            44566667  69999999999999999985 222 2467789999988877654  222 2222223   3455667788


Q ss_pred             eeeeeec
Q 038698          268 FDMAQCS  274 (283)
Q Consensus       268 FDlV~cs  274 (283)
                      +|+|++.
T Consensus       144 vD~i~~d  150 (227)
T d1g8aa_         144 VDVIFED  150 (227)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEEE
Confidence            9999874

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.97  E-value=1.8e-05  Score=69.65  Aligned_cols=99  Identities=13%  Similarity=0.085  Sum_probs=70.3

Q ss_pred             cCCeeeeCCCCCCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-
Q 038698          169 QGNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-  247 (283)
Q Consensus       169 ~~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-  247 (283)
                      +|-++.+.-.-++|..+-.....+|.+.+..  |  .+|||+|||+|+|+..+++++.  ..+.++|+++.+++.+.+. 
T Consensus        77 ~g~~~~~d~~~~~f~~~~~~er~ri~~~~~~--g--~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~  150 (260)
T d2frna1          77 NGIKYKLDVAKIMFSPANVKERVRMAKVAKP--D--ELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENI  150 (260)
T ss_dssp             TTEEEEEETTTSCCCGGGHHHHHHHHHHCCT--T--CEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHH
T ss_pred             cCeeEEeccccccEecCCHHHHHHHHhhcCC--c--cEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHH
Confidence            4556666666677776655555567777643  5  6899999999999998887753  2466788888888777532 


Q ss_pred             ---CCC--eEEEeccccCCCCCCCceeeeeec
Q 038698          248 ---GVP--AVIGVLGTIHLPYPSRAFDMAQCS  274 (283)
Q Consensus       248 ---g~~--a~~~v~da~rLPFpd~SFDlV~cs  274 (283)
                         ++.  ..+..+|+..++- .+.||.|+..
T Consensus       151 ~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~  181 (260)
T d2frna1         151 HLNKVEDRMSAYNMDNRDFPG-ENIADRILMG  181 (260)
T ss_dssp             HHTTCTTTEEEECSCTTTCCC-CSCEEEEEEC
T ss_pred             HHhCCCceEEEEEcchHHhcc-CCCCCEEEEC
Confidence               553  4455678777754 5889999875

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=7e-06  Score=71.76  Aligned_cols=96  Identities=14%  Similarity=0.190  Sum_probs=60.7

Q ss_pred             CCCCCC--chhHHHHHHHhhCCCC---CCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC
Q 038698          179 GTMFPQ--GADAYIDELASVIPIK---DGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV  249 (283)
Q Consensus       179 gt~F~~--ga~~Yid~I~~~l~~~---~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~  249 (283)
                      |...|.  ....|++.|.+++...   .....+|||+|||+|..+..|+.+.. ...+.+.|+++.+++.|.+.    ++
T Consensus        32 ~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~al~~A~~N~~~n~l  110 (250)
T d2h00a1          32 ERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNL  110 (250)
T ss_dssp             TSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             CeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCC-CccccceecCHHHHHHHHHHHHHhCC
Confidence            445553  2345667777766532   12346899999999999988887622 23577889999998888643    33


Q ss_pred             Ce--EEEeccccC------CCCCCCceeeeeecc
Q 038698          250 PA--VIGVLGTIH------LPYPSRAFDMAQCSR  275 (283)
Q Consensus       250 ~a--~~~v~da~r------LPFpd~SFDlV~cs~  275 (283)
                      ..  .+...+...      ....++.||+|+|+-
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNP  144 (250)
T d2h00a1         111 SDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNP  144 (250)
T ss_dssp             TTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECC
T ss_pred             CcceeeeeeccHHhhhhhhhhcccCceeEEEecC
Confidence            32  222212111      124567899999974

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.93  E-value=1e-05  Score=72.93  Aligned_cols=90  Identities=17%  Similarity=0.050  Sum_probs=62.3

Q ss_pred             CCCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eE
Q 038698          179 GTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AV  252 (283)
Q Consensus       179 gt~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~  252 (283)
                      .|.|.-.-......|.+++..  |  .+|||+|||+|.++..++.++..  .+.++|+++..++.|.+.    |+.  ..
T Consensus       125 ~tG~flDqr~~r~~~~~~~~~--g--~~VLDl~~g~G~~si~~a~~ga~--~V~~vD~s~~al~~a~~N~~~ngl~~~~~  198 (324)
T d2as0a2         125 KTGFFLDQRENRLALEKWVQP--G--DRVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGVEDRMK  198 (324)
T ss_dssp             SSCCCSTTHHHHHHHGGGCCT--T--CEEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCGGGEE
T ss_pred             ccCcccchhhHHHHHHhhcCC--C--CeeecccCcccchhhhhhhcCCc--EEEeecCCHHHHHHHHHHHHHcCCCccce
Confidence            344444445555566666542  4  58999999999999999887643  467789999888877542    552  34


Q ss_pred             EEeccc----cCCCCCCCceeeeeec
Q 038698          253 IGVLGT----IHLPYPSRAFDMAQCS  274 (283)
Q Consensus       253 ~~v~da----~rLPFpd~SFDlV~cs  274 (283)
                      +..+|+    ..++.....||+|++.
T Consensus       199 ~~~~d~~~~~~~~~~~~~~fD~Vi~D  224 (324)
T d2as0a2         199 FIVGSAFEEMEKLQKKGEKFDIVVLD  224 (324)
T ss_dssp             EEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             eeechhhhhhHHHHhccCCCCchhcC
Confidence            555553    3456678999999973

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.82  E-value=8.4e-06  Score=65.61  Aligned_cols=68  Identities=9%  Similarity=0.063  Sum_probs=49.3

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccC-CCCCCCceeeeeec
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIH-LPYPSRAFDMAQCS  274 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~r-LPFpd~SFDlV~cs  274 (283)
                      .+|||+|||+|.++...+.|+..  .+..+|.++.+++.+.+.    ++.  ..+..+|+.. |+...+.||+|++.
T Consensus        16 ~~vlDl~~GtG~~~iea~~rga~--~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~D   90 (152)
T d2esra1          16 GRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD   90 (152)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred             CeEEEcCCccCHHHHHHHHhCcc--eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEec
Confidence            58999999999999888888763  456778888777655432    443  3455556444 56788999999873

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.74  E-value=3.1e-06  Score=74.31  Aligned_cols=91  Identities=10%  Similarity=0.139  Sum_probs=63.5

Q ss_pred             CCCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---CCeEEEe
Q 038698          179 GTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---VPAVIGV  255 (283)
Q Consensus       179 gt~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---~~a~~~v  255 (283)
                      |..|-.. ...++.|.+.+....+  .+||+||||+|.++..|++++..   +..+|+++.+++.+.++.   ....+..
T Consensus         8 GQnFL~d-~~ii~kIv~~~~~~~~--d~VLEIGpG~G~LT~~L~~~~~~---v~aIE~D~~l~~~l~~~~~~~~n~~ii~   81 (245)
T d1yuba_           8 SQNFLTS-EKVLNQIIKQLNLKET--DTVYEIGTGKGHLTTKLAKISKQ---VTSIELDSHLFNLSSEKLKLNTRVTLIH   81 (245)
T ss_dssp             CCCBCCC-TTTHHHHHHHCCCCSS--EEEEECSCCCSSCSHHHHHHSSE---EEESSSSCSSSSSSSCTTTTCSEEEECC
T ss_pred             CCcccCC-HHHHHHHHHhcCCCCC--CeEEEECCCccHHHHHHHhhcCc---eeEeeecccchhhhhhhhhhccchhhhh
Confidence            4444433 3457888898887544  79999999999999999997543   334555555555554442   2344666


Q ss_pred             ccccCCCCCCCceeeeeecc
Q 038698          256 LGTIHLPYPSRAFDMAQCSR  275 (283)
Q Consensus       256 ~da~rLPFpd~SFDlV~cs~  275 (283)
                      +|+..+++++..++.|+++.
T Consensus        82 ~D~l~~~~~~~~~~~vv~NL  101 (245)
T d1yuba_          82 QDILQFQFPNKQRYKIVGNI  101 (245)
T ss_dssp             SCCTTTTCCCSSEEEEEEEC
T ss_pred             hhhhccccccceeeeEeeee
Confidence            78889999999999888764

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=97.72  E-value=8.5e-06  Score=67.09  Aligned_cols=67  Identities=16%  Similarity=0.099  Sum_probs=48.2

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCCeEEEeccc----cCCCCCCCceeeeeec
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVPAVIGVLGT----IHLPYPSRAFDMAQCS  274 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~a~~~v~da----~rLPFpd~SFDlV~cs  274 (283)
                      .+|||+|||+|.++...+.++..+   ..+|.++.+++.+.+    .++...+...++    ..+...+..||+|++.
T Consensus        43 ~~vLDl~~G~G~~~i~a~~~ga~v---v~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D  117 (171)
T d1ws6a1          43 GRFLDPFAGSGAVGLEAASEGWEA---VLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA  117 (171)
T ss_dssp             CEEEEETCSSCHHHHHHHHTTCEE---EEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CeEEEeccccchhhhhhhhccchh---hhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence            489999999999999888887643   357999988877653    266544443332    2345677889999874

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.71  E-value=5.7e-05  Score=65.49  Aligned_cols=83  Identities=11%  Similarity=0.122  Sum_probs=60.4

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC---CeEEEeccccCCCC
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV---PAVIGVLGTIHLPY  263 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~---~a~~~v~da~rLPF  263 (283)
                      +..++.|.+.+....+  .+||+||||+|.++..|++++.   .+..+++++..++...++..   ...+..+|+-.+++
T Consensus         7 ~~i~~~iv~~~~~~~~--d~VlEIGpG~G~LT~~Ll~~~~---~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~   81 (235)
T d1qama_           7 KHNIDKIMTNIRLNEH--DNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKF   81 (235)
T ss_dssp             HHHHHHHHTTCCCCTT--CEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCC
T ss_pred             HHHHHHHHHhcCCCCC--CeEEEECCCchHHHHHHHhCcC---ceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccc
Confidence            3457888888887555  6899999999999999999754   34557777888777766532   34566678888887


Q ss_pred             CCCceeeeeec
Q 038698          264 PSRAFDMAQCS  274 (283)
Q Consensus       264 pd~SFDlV~cs  274 (283)
                      +......|+++
T Consensus        82 ~~~~~~~vv~N   92 (235)
T d1qama_          82 PKNQSYKIFGN   92 (235)
T ss_dssp             CSSCCCEEEEE
T ss_pred             cccccceeeee
Confidence            76655555543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.71  E-value=9.1e-06  Score=76.35  Aligned_cols=55  Identities=13%  Similarity=0.166  Sum_probs=42.8

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHH
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALE  246 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~e  246 (283)
                      ..+.+|.+.+.+.+|  .++||||||+|.++.+++.+ +.  ..+.|+|+++.+++.|.+
T Consensus       203 ~~i~~Il~~l~Lkpg--d~fLDLGCG~G~~vl~aA~~~g~--~~v~GIDiS~~~i~~Ak~  258 (406)
T d1u2za_         203 NFLSDVYQQCQLKKG--DTFMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLTIL  258 (406)
T ss_dssp             HHHHHHHHHTTCCTT--CEEEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCC--CEEEeCCCCCcHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHH
Confidence            357888888888766  69999999999999888875 32  135678888888887754

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.61  E-value=9e-05  Score=61.76  Aligned_cols=64  Identities=14%  Similarity=0.015  Sum_probs=41.6

Q ss_pred             CCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCcc----HHHHHHhhc---CCeeEeeccccChHHHHHHHH
Q 038698          180 TMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVA----SWGAYLLKR---NVLTMSFAPRDNHEAQVQFAL  245 (283)
Q Consensus       180 t~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtG----sfaa~L~~r---~v~~~sla~~D~s~a~vq~A~  245 (283)
                      |.|++...++ +.|.+.+... +..-+||++|||+|    +++..|.+.   ....+.+.+.|+++..++.|.
T Consensus         3 T~FFRd~~~f-~~L~~~~~~~-~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~   73 (193)
T d1af7a2           3 TAFFREAHHF-PILAEHARRR-HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKAR   73 (193)
T ss_dssp             CCTTTTTTHH-HHHHHHHHHS-CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHH
T ss_pred             CCCcCCcHHH-HHHHHHHhcc-CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhh
Confidence            6677766655 3444443222 33468999999999    456556553   111246788899999988885

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.52  E-value=6.5e-05  Score=63.30  Aligned_cols=81  Identities=12%  Similarity=0.060  Sum_probs=59.0

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCC----
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHL----  261 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rL----  261 (283)
                      ++++.+++...+|  .++||++||+|.++..++++... ..+.++|.++++++.|.++    +....+...+...+    
T Consensus        12 l~evi~~l~~~~~--~~~lD~t~G~Gghs~~il~~~~~-~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~   88 (192)
T d1m6ya2          12 VREVIEFLKPEDE--KIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL   88 (192)
T ss_dssp             HHHHHHHHCCCTT--CEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred             HHHHHHhhCCCCC--CEEEEecCCCcHHHHHHHhcCCC-CeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHH
Confidence            5677777777666  59999999999999999887433 4688999999999999875    22344544433332    


Q ss_pred             -CCCCCceeeeee
Q 038698          262 -PYPSRAFDMAQC  273 (283)
Q Consensus       262 -PFpd~SFDlV~c  273 (283)
                       .+..++||-|..
T Consensus        89 ~~~~~~~vdgIl~  101 (192)
T d1m6ya2          89 KTLGIEKVDGILM  101 (192)
T ss_dssp             HHTTCSCEEEEEE
T ss_pred             HHcCCCCcceeee
Confidence             456788998764

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.49  E-value=3.5e-05  Score=69.37  Aligned_cols=67  Identities=16%  Similarity=0.102  Sum_probs=50.3

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccc----cCCCCCCCceeeeeec
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGT----IHLPYPSRAFDMAQCS  274 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da----~rLPFpd~SFDlV~cs  274 (283)
                      .+|||++||+|.++..++..   +..+..+|+++.+++.|.+.    |+. ..+..+++    ..++...+.||+|++.
T Consensus       147 ~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D  222 (318)
T d1wxxa2         147 ERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  222 (318)
T ss_dssp             EEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence            79999999999999888753   34667889999988877643    653 44555553    3366778899999974

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=0.00013  Score=65.18  Aligned_cols=102  Identities=17%  Similarity=0.230  Sum_probs=64.7

Q ss_pred             ceeecCCeeeeCCCCCCCCCc----hhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHH
Q 038698          165 WVQFQGNVFKFPGGGTMFPQG----ADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQ  240 (283)
Q Consensus       165 w~~~~~~~~~Fpgggt~F~~g----a~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~  240 (283)
                      |....|=+|.++  ...|.+.    ++..++.+.+++....+  .+|||+-||+|+|+..|+++..   .+.++|+++++
T Consensus       174 ~~~~~g~~~~i~--p~sFfQ~N~~~~e~l~~~v~~~~~~~~~--~~vlDLycG~G~fsl~La~~~~---~V~gvE~~~~a  246 (358)
T d1uwva2         174 WYDSNGLRLTFS--PRDFIQVNAGVNQKMVARALEWLDVQPE--DRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPAL  246 (358)
T ss_dssp             EEEETTEEEECC--SSSCCCSBHHHHHHHHHHHHHHHTCCTT--CEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHH
T ss_pred             EEecCCEEEEEC--CchhhccchhhhhHHHHHHHHhhccCCC--ceEEEecccccccchhcccccc---EEEeccCcHHH
Confidence            333433334443  4556653    35557777777775444  6899999999999999988643   34566777777


Q ss_pred             HHHHHH----cCCC-eEEEecccc----CCCCCCCceeeeee
Q 038698          241 VQFALE----RGVP-AVIGVLGTI----HLPYPSRAFDMAQC  273 (283)
Q Consensus       241 vq~A~e----rg~~-a~~~v~da~----rLPFpd~SFDlV~c  273 (283)
                      ++.|.+    .|+. ..+..++++    .++.....||+|+.
T Consensus       247 i~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vil  288 (358)
T d1uwva2         247 VEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL  288 (358)
T ss_dssp             HHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEE
T ss_pred             HHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEe
Confidence            776653    2664 344444432    34455678999874

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=0.00037  Score=57.38  Aligned_cols=101  Identities=15%  Similarity=0.112  Sum_probs=60.0

Q ss_pred             cCCeeeeCCCCCCCCCchhHHHHHHHhhCCC-CCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH-
Q 038698          169 QGNVFKFPGGGTMFPQGADAYIDELASVIPI-KDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE-  246 (283)
Q Consensus       169 ~~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~-~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e-  246 (283)
                      .|-++.+|.+...-|. .+.-.+.|-.+|.. ..+  .+|||++||+|+++...+.|+..  .+..+|.+...++.+.+ 
T Consensus        11 kg~~l~~~~~~~~RPt-~~~vre~lfn~l~~~~~~--~~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N   85 (183)
T d2fpoa1          11 RGRKLPVPDSPGLRPT-TDRVRETLFNWLAPVIVD--AQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKN   85 (183)
T ss_dssp             TTCEEECCCC-------CHHHHHHHHHHHHHHHTT--CEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHH
T ss_pred             CCCEecCCCCCCcCcC-cHHHHHHHHhhhhcccch--hhhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHH
Confidence            4567788876544332 22333444444431 123  58999999999999988888764  34557777777665542 


Q ss_pred             --c-CCC-eEEEeccc-cCCCCCCCceeeeeec
Q 038698          247 --R-GVP-AVIGVLGT-IHLPYPSRAFDMAQCS  274 (283)
Q Consensus       247 --r-g~~-a~~~v~da-~rLPFpd~SFDlV~cs  274 (283)
                        . +.. ..+...|+ ..|.-.+..||+|++-
T Consensus        86 ~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~D  118 (183)
T d2fpoa1          86 LATLKAGNARVVNSNAMSFLAQKGTPHNIVFVD  118 (183)
T ss_dssp             HHHTTCCSEEEECSCHHHHHSSCCCCEEEEEEC
T ss_pred             HhhccccceeeeeecccccccccccccCEEEEc
Confidence              2 442 33333443 3345577899999874

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.31  E-value=0.00041  Score=61.20  Aligned_cols=71  Identities=13%  Similarity=0.140  Sum_probs=49.8

Q ss_pred             ccEEeecCCCccHHHHHHhh----cCCeeEeeccccChHHHHHHHHH----cCCCeEEEeccccCCCCCCCceeeeeecc
Q 038698          204 VRTALDTGCGVASWGAYLLK----RNVLTMSFAPRDNHEAQVQFALE----RGVPAVIGVLGTIHLPYPSRAFDMAQCSR  275 (283)
Q Consensus       204 ~r~VLDVGCGtGsfaa~L~~----r~v~~~sla~~D~s~a~vq~A~e----rg~~a~~~v~da~rLPFpd~SFDlV~cs~  275 (283)
                      ..+|||.+||+|.|+..+.+    +......+.|.|+++.++..|..    .+....+...+.. ...+...||+|+++-
T Consensus       118 ~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~fD~vi~NP  196 (328)
T d2f8la1         118 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGL-ANLLVDPVDVVISDL  196 (328)
T ss_dssp             EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTT-SCCCCCCEEEEEEEC
T ss_pred             CCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccc-cccccccccccccCC
Confidence            36899999999999876653    33345567889999988877753    2555555444432 245668899999974

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.24  E-value=4.6e-05  Score=62.62  Aligned_cols=81  Identities=14%  Similarity=0.101  Sum_probs=50.7

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCce
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAF  268 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SF  268 (283)
                      -++.|.+++....+  .+|||.|||+|.|+..+.++......+.++|+.+..+..    ...+.+...+... ......|
T Consensus         7 i~~~m~~l~~~~~~--~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----~~~~~~~~~~~~~-~~~~~~f   79 (223)
T d2ih2a1           7 VVDFMVSLAEAPRG--GRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----PPWAEGILADFLL-WEPGEAF   79 (223)
T ss_dssp             HHHHHHHHCCCCTT--CEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----CTTEEEEESCGGG-CCCSSCE
T ss_pred             HHHHHHHhcCCCCc--CEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----cccceeeeeehhc-ccccccc
Confidence            35678888876555  589999999999988877653333345666666543211    1123333334322 3356889


Q ss_pred             eeeeeccc
Q 038698          269 DMAQCSRC  276 (283)
Q Consensus       269 DlV~cs~~  276 (283)
                      |+|+++--
T Consensus        80 d~ii~npP   87 (223)
T d2ih2a1          80 DLILGNPP   87 (223)
T ss_dssp             EEEEECCC
T ss_pred             ceecccCc
Confidence            99998743

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.06  E-value=0.00029  Score=63.66  Aligned_cols=66  Identities=9%  Similarity=-0.001  Sum_probs=48.8

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC---eEEEecccc----CCCCCCCceeeeee
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP---AVIGVLGTI----HLPYPSRAFDMAQC  273 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~---a~~~v~da~----rLPFpd~SFDlV~c  273 (283)
                      .+|||+.||+|.|+..++..+.   .+..+|.++..++.|++.    |+.   ..+.+.|+.    ++-...+.||+|++
T Consensus       134 ~rVLdlf~~tG~~sl~aa~~GA---~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil  210 (309)
T d2igta1         134 LKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT  210 (309)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred             CeEEEecCCCcHHHHHHHhCCC---eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence            6899999999999999988765   456789999998888642    442   445555532    23345678999997

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.03  E-value=0.00057  Score=59.10  Aligned_cols=85  Identities=12%  Similarity=0.022  Sum_probs=51.8

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCcee
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFD  269 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFD  269 (283)
                      .+.|.+.++.- .+.++|||||||+|.++..|+++... +..+..|+-+ .+..+.. .-...+..+|.. -|.|  ..|
T Consensus        69 ~~~l~~~~~~f-~~~~~vlDiGGG~G~~~~~l~~~~P~-l~~~v~Dlp~-vi~~~~~-~~ri~~~~gd~~-~~~p--~~D  141 (244)
T d1fp1d2          69 MKRMLEIYTGF-EGISTLVDVGGGSGRNLELIISKYPL-IKGINFDLPQ-VIENAPP-LSGIEHVGGDMF-ASVP--QGD  141 (244)
T ss_dssp             HHHHHHHCCTT-TTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHH-HHTTCCC-CTTEEEEECCTT-TCCC--CEE
T ss_pred             HHHHHHhcccc-cCCcEEEEecCCCcHHHHHHHHHCCC-CeEEEecchh-hhhccCC-CCCeEEecCCcc-cccc--cce
Confidence            55666666631 24589999999999999999987432 2334456532 2221111 112334334532 2455  349


Q ss_pred             eeeecccccccc
Q 038698          270 MAQCSRCLIPWT  281 (283)
Q Consensus       270 lV~cs~~Li~W~  281 (283)
                      +|+++.+|-+|.
T Consensus       142 ~~~l~~vLh~~~  153 (244)
T d1fp1d2         142 AMILKAVCHNWS  153 (244)
T ss_dssp             EEEEESSGGGSC
T ss_pred             EEEEehhhhhCC
Confidence            999999998885

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.01  E-value=0.00073  Score=55.76  Aligned_cols=99  Identities=17%  Similarity=0.130  Sum_probs=63.1

Q ss_pred             CCeeeeCCCCCCCCCchhHHHHHHHhhCCC-CCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-
Q 038698          170 GNVFKFPGGGTMFPQGADAYIDELASVIPI-KDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-  247 (283)
Q Consensus       170 ~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~-~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-  247 (283)
                      |-++.+|.+...-|.. +.--+.|-.+|.. ..|  .+|||+.||+|+++...+.|+..  .+..+|.++..++.+.+. 
T Consensus        10 g~~l~~~~~~~~RPt~-~~vrealFn~l~~~~~~--~~vLDlfaGsG~~g~ea~srGa~--~v~~ve~~~~a~~~~~~N~   84 (182)
T d2fhpa1          10 GRRLKALDGDNTRPTT-DKVKESIFNMIGPYFDG--GMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENI   84 (182)
T ss_dssp             TCBCCCCCCCSSCCCC-HHHHHHHHHHHCSCCSS--CEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHH
T ss_pred             CCEecCCCCCCcCcCc-HHHHHHHHHHHHHhcCC--CEEEEcccccccccceeeecchh--HHHHHHHHHHHHHHHHHHh
Confidence            5567777765544432 2334455566652 234  68999999999999988898764  355678888777766432 


Q ss_pred             ---CC--CeEEEeccccC----CCCCCCceeeeee
Q 038698          248 ---GV--PAVIGVLGTIH----LPYPSRAFDMAQC  273 (283)
Q Consensus       248 ---g~--~a~~~v~da~r----LPFpd~SFDlV~c  273 (283)
                         +.  ...+...|+.+    +.-....||+|++
T Consensus        85 ~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl  119 (182)
T d2fhpa1          85 AITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  119 (182)
T ss_dssp             HHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             hhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence               43  24455555432    2235668999986

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=96.78  E-value=0.00037  Score=61.72  Aligned_cols=85  Identities=15%  Similarity=0.154  Sum_probs=54.1

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCe--EEEecc-cc
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPA--VIGVLG-TI  259 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a--~~~v~d-a~  259 (283)
                      +..++.+.+.+..  ....++||+|||+|..+..+++..  ...+.+.|+++..++.|++.    ++..  .+...+ ..
T Consensus        96 E~lv~~~~~~~~~--~~~~~vld~g~GsG~i~~~la~~~--~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~  171 (271)
T d1nv8a_          96 EELVELALELIRK--YGIKTVADIGTGSGAIGVSVAKFS--DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE  171 (271)
T ss_dssp             HHHHHHHHHHHHH--HTCCEEEEESCTTSHHHHHHHHHS--SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG
T ss_pred             hhhhhhhhhhhcc--ccccEEEEeeeeeehhhhhhhhcc--cceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccc
Confidence            4445555555443  224689999999999888777642  22466789999998887642    4432  233333 22


Q ss_pred             CCCCCCCceeeeeecc
Q 038698          260 HLPYPSRAFDMAQCSR  275 (283)
Q Consensus       260 rLPFpd~SFDlV~cs~  275 (283)
                      .++...+.||+|+|+-
T Consensus       172 ~~~~~~~~fDlIVsNP  187 (271)
T d1nv8a_         172 PFKEKFASIEMILSNP  187 (271)
T ss_dssp             GGGGGTTTCCEEEECC
T ss_pred             ccccccCcccEEEEcc
Confidence            3344457999999973

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=96.71  E-value=0.0015  Score=58.49  Aligned_cols=67  Identities=10%  Similarity=0.054  Sum_probs=44.1

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC---eEEEeccc----cCCCCCCCceeeeee
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP---AVIGVLGT----IHLPYPSRAFDMAQC  273 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~---a~~~v~da----~rLPFpd~SFDlV~c  273 (283)
                      ++|||+.||+|.|+..++..+..  .+..+|+++..++.|.+    .++.   ..+..+|+    .++.-....||+|++
T Consensus       146 ~~VLdlf~~~G~~sl~aa~~ga~--~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~  223 (317)
T d2b78a2         146 KTVLNLFSYTAAFSVAAAMGGAM--ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII  223 (317)
T ss_dssp             CEEEEETCTTTHHHHHHHHTTBS--EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CceeecCCCCcHHHHHHHhCCCc--eEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence            68999999999999887765432  24456777666665543    2442   34555554    233335678999997

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.63  E-value=0.0012  Score=55.84  Aligned_cols=83  Identities=11%  Similarity=0.071  Sum_probs=52.0

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC--eEEEecccc-
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP--AVIGVLGTI-  259 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~--a~~~v~da~-  259 (283)
                      ...+..|.+...     +++||+||||+|..+.+|++.-.....+..+|..+.+.+.|++    .|..  +.+..+++. 
T Consensus        45 G~lL~~lv~~~k-----pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e  119 (214)
T d2cl5a1          45 GQIMDAVIREYS-----PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQD  119 (214)
T ss_dssp             HHHHHHHHHHHC-----CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred             HHHHHHHHHhhC-----CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccc
Confidence            334555555443     3799999999999999888741112234556777777666642    2653  445555532 


Q ss_pred             ---CC--CCCCCceeeeeec
Q 038698          260 ---HL--PYPSRAFDMAQCS  274 (283)
Q Consensus       260 ---rL--PFpd~SFDlV~cs  274 (283)
                         +|  .+..+.||+|+.-
T Consensus       120 ~l~~l~~~~~~~~~D~ifiD  139 (214)
T d2cl5a1         120 LIPQLKKKYDVDTLDMVFLD  139 (214)
T ss_dssp             HGGGHHHHSCCCCEEEEEEC
T ss_pred             cccchhhcccccccceeeec
Confidence               22  3677899999864

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.28  E-value=0.0017  Score=55.93  Aligned_cols=74  Identities=14%  Similarity=0.081  Sum_probs=47.6

Q ss_pred             CccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeeccccccccc
Q 038698          203 SVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTS  282 (283)
Q Consensus       203 ~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~W~~  282 (283)
                      +.++|||||||+|.++..++++... +.++..|+.+ .++.+... -...+..+|... |.+  .+|+++++.+|-+|..
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp~-vi~~~~~~-~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~d  153 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPK-LKCIVFDRPQ-VVENLSGS-NNLTYVGGDMFT-SIP--NADAVLLKYILHNWTD  153 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHH-HHTTCCCB-TTEEEEECCTTT-CCC--CCSEEEEESCGGGSCH
T ss_pred             CceEEEEecCCccHHHHHHHHhCCC-CeEEEecCHH-HHHhCccc-CceEEEecCccc-CCC--CCcEEEEEeecccCCh
Confidence            3578999999999999999987432 2445567643 23322211 124444455433 334  5799999999988853

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.0046  Score=53.75  Aligned_cols=56  Identities=16%  Similarity=0.143  Sum_probs=41.8

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER  247 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er  247 (283)
                      ...++.|.+.+....+  +.||.||||+|.++..|+++...   +..+++++..++...++
T Consensus         7 ~~~~~~Iv~~~~~~~~--d~vlEIGpG~G~LT~~Ll~~~~~---v~aiEiD~~l~~~L~~~   62 (252)
T d1qyra_           7 QFVIDSIVSAINPQKG--QAMVEIGPGLAALTEPVGERLDQ---LTVIELDRDLAARLQTH   62 (252)
T ss_dssp             HHHHHHHHHHHCCCTT--CCEEEECCTTTTTHHHHHTTCSC---EEEECCCHHHHHHHHTC
T ss_pred             HHHHHHHHHhcCCCCC--CEEEEECCCchHHHHHHHccCCc---eEEEEeccchhHHHHHH
Confidence            3467788888876444  68999999999999999997543   44567777776665554

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0041  Score=52.82  Aligned_cols=83  Identities=14%  Similarity=0.061  Sum_probs=48.4

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC--eEEEeccc-c
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP--AVIGVLGT-I  259 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~--a~~~v~da-~  259 (283)
                      ..++..|.++...     ++||+||||+|+-+.+|++.-.....+..+|..+...+.|++    .|..  ..+..+++ +
T Consensus        48 g~lL~~L~~~~~~-----k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e  122 (219)
T d2avda1          48 AQLLANLARLIQA-----KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE  122 (219)
T ss_dssp             HHHHHHHHHHTTC-----CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             HHHHHHHHHccCC-----CeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhh
Confidence            4556666666543     699999999999999998741111123334444454444432    2443  33444442 2


Q ss_pred             CCC-----CCCCceeeeeec
Q 038698          260 HLP-----YPSRAFDMAQCS  274 (283)
Q Consensus       260 rLP-----Fpd~SFDlV~cs  274 (283)
                      .||     ..+++||+|+-.
T Consensus       123 ~l~~~~~~~~~~~fD~ifiD  142 (219)
T d2avda1         123 TLDELLAAGEAGTFDVAVVD  142 (219)
T ss_dssp             HHHHHHHTTCTTCEEEEEEC
T ss_pred             cchhhhhhcccCCccEEEEe
Confidence            232     357889999864

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.56  E-value=0.0072  Score=51.40  Aligned_cols=85  Identities=9%  Similarity=0.001  Sum_probs=47.0

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCcee
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFD  269 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFD  269 (283)
                      .+.+.+..+.. .+.++|||||||+|.++..|+++... +.....|+.+. ++.+.+ .....+...+... |.|.  -|
T Consensus        69 ~~~~~~~~~~~-~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp~v-i~~~~~-~~r~~~~~~d~~~-~~P~--ad  141 (243)
T d1kyza2          69 MKKILETYTGF-EGLKSLVDVGGGTGAVINTIVSKYPT-IKGINFDLPHV-IEDAPS-YPGVEHVGGDMFV-SIPK--AD  141 (243)
T ss_dssp             HHHHHHHCCTT-SSCSEEEEETCTTSHHHHHHHHHCTT-SEEEEEECTTT-TTTCCC-CTTEEEEECCTTT-CCCC--CS
T ss_pred             HHHHHHhcccc-cCCcEEEEecCCCcHHHHHHHHHCCC-CeEEEcccHHh-hhhccc-CCceEEecccccc-cCCC--cc
Confidence            34444444432 23579999999999999999986321 12233444321 221211 1223344344322 4443  46


Q ss_pred             eeeecccccccc
Q 038698          270 MAQCSRCLIPWT  281 (283)
Q Consensus       270 lV~cs~~Li~W~  281 (283)
                      +++...+|-.|.
T Consensus       142 ~~~l~~vlh~~~  153 (243)
T d1kyza2         142 AVFMKWICHDWS  153 (243)
T ss_dssp             CEECSSSSTTSC
T ss_pred             eEEEEEEeecCC
Confidence            777888888885

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.43  E-value=0.0037  Score=54.81  Aligned_cols=121  Identities=12%  Similarity=0.115  Sum_probs=70.1

Q ss_pred             eeeecccCCchhhhh--hhhcCceeecCCeeeeCCCCCCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHh
Q 038698          145 YVHYANVPHKSLTVE--KAVQNWVQFQGNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLL  222 (283)
Q Consensus       145 ~~W~~n~p~~~L~~~--k~~q~w~~~~~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~  222 (283)
                      ++....-+|..+...  +...+|+.++|. +.+-.      .....|.+.|....-....++++||-+|+|.|..+..++
T Consensus        19 ~l~~~~S~yq~I~v~~~~~~gr~L~Ldg~-~q~~~------~de~~Yhe~l~~~~l~~~~~p~~vLiiG~G~G~~~~~~l   91 (276)
T d1mjfa_          19 KIYEKLSKYQKIEVYETEGFGRLLALDGT-VQLVT------LGERSYHEPLVHPAMLAHPKPKRVLVIGGGDGGTVREVL   91 (276)
T ss_dssp             EEEEEECSSCEEEEEEESSSCEEEEETTE-EEEET------TTTHHHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHT
T ss_pred             EEEEecCCCeEEEEEEeCCCCeEEEECCc-eeeec------cchhHHHHHhhcchhhcCCCCceEEEecCCchHHHHHHH
Confidence            344445555554322  222356666653 33311      122467777765321122456899999999999998888


Q ss_pred             hcCCeeEeeccccChHHHHHHHHHc---------------CCCeEEEeccccCCCCCCCceeeeeec
Q 038698          223 KRNVLTMSFAPRDNHEAQVQFALER---------------GVPAVIGVLGTIHLPYPSRAFDMAQCS  274 (283)
Q Consensus       223 ~r~v~~~sla~~D~s~a~vq~A~er---------------g~~a~~~v~da~rLPFpd~SFDlV~cs  274 (283)
                      ++...  .+..+|+.++.++.|++-               .....+...|+...=-.++.||+|+.-
T Consensus        92 ~~~~~--~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~yDvIi~D  156 (276)
T d1mjfa_          92 QHDVD--EVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFDVIIAD  156 (276)
T ss_dssp             TSCCS--EEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEEEEEEE
T ss_pred             HhCCc--eEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCCCEEEEe
Confidence            87653  355678888888888642               112334444532111135789999863

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.019  Score=50.53  Aligned_cols=80  Identities=16%  Similarity=0.193  Sum_probs=50.5

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc--C----CCeEEEeccccCC
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER--G----VPAVIGVLGTIHL  261 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er--g----~~a~~~v~da~rL  261 (283)
                      ..++.|.+.+....+  .+||+||+|+|.++..|++++..   +..+++.+..++...++  +    ....+...|+...
T Consensus         8 ~i~~kIv~~~~~~~~--d~VlEIGPG~G~LT~~Ll~~~~~---v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~   82 (278)
T d1zq9a1           8 LIINSIIDKAALRPT--DVVLEVGPGTGNMTVKLLEKAKK---VVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT   82 (278)
T ss_dssp             HHHHHHHHHTCCCTT--CEEEEECCTTSTTHHHHHHHSSE---EEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred             HHHHHHHHHhCCCCC--CEEEEECCCchHHHHHHHhcCCc---EEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhh
Confidence            357788888876544  68999999999999999987543   33455556655554432  1    1233444565554


Q ss_pred             CCCCCceeeeeec
Q 038698          262 PYPSRAFDMAQCS  274 (283)
Q Consensus       262 PFpd~SFDlV~cs  274 (283)
                      +++.  ++.|+.+
T Consensus        83 ~~~~--~~~vV~N   93 (278)
T d1zq9a1          83 DLPF--FDTCVAN   93 (278)
T ss_dssp             CCCC--CSEEEEE
T ss_pred             hhhh--hhhhhcc
Confidence            4442  4556554

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=94.67  E-value=0.055  Score=45.41  Aligned_cols=70  Identities=19%  Similarity=0.117  Sum_probs=43.0

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHH----HHcCCC-eEEEeccccCCCCCCCceeeeeeccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFA----LERGVP-AVIGVLGTIHLPYPSRAFDMAQCSRC  276 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A----~erg~~-a~~~v~da~rLPFpd~SFDlV~cs~~  276 (283)
                      .++||||+|.|.-|.-|+=... ...+..+|.....+.|.    .+-+.. +.+....++.+. .+.+||+|+|..+
T Consensus        67 ~~ilDiGsGaG~PGi~laI~~p-~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~  141 (207)
T d1jsxa_          67 ERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF  141 (207)
T ss_dssp             SEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS
T ss_pred             CceeeeeccCCceeeehhhhcc-cceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhh
Confidence            4899999999987766553211 12445566666555543    334764 334434566654 4678999887543

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=94.50  E-value=0.012  Score=52.35  Aligned_cols=87  Identities=17%  Similarity=0.114  Sum_probs=54.5

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc------C----CCeEEEec
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER------G----VPAVIGVL  256 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er------g----~~a~~~v~  256 (283)
                      ..|.+.|....-.....+++||.||.|.|..+..+++... ...+..+++.++.++.|.+.      +    ....+...
T Consensus        61 ~~Yhe~l~h~~l~~~~~pk~VLiiG~G~G~~~~~ll~~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~  139 (312)
T d1uira_          61 YIYHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVID  139 (312)
T ss_dssp             HHHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES
T ss_pred             HHHHHHHhhhhhhhCCCcceEEEeCCCchHHHHHHHhcCC-cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEc
Confidence            4567766653211223568999999999999988887632 22456678888888877643      1    12334444


Q ss_pred             cccC-CCCCCCceeeeeec
Q 038698          257 GTIH-LPYPSRAFDMAQCS  274 (283)
Q Consensus       257 da~r-LPFpd~SFDlV~cs  274 (283)
                      |+.. |.-.++.||+|+.-
T Consensus       140 Da~~~l~~~~~~yDvIi~D  158 (312)
T d1uira_         140 DARAYLERTEERYDVVIID  158 (312)
T ss_dssp             CHHHHHHHCCCCEEEEEEE
T ss_pred             hHHHHhhhcCCcccEEEEe
Confidence            5222 22246789999953

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=94.12  E-value=0.066  Score=43.29  Aligned_cols=99  Identities=16%  Similarity=0.114  Sum_probs=53.0

Q ss_pred             CCeeeeCCCCCCCCCchhHHHHHHHhhCCC-CCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH---
Q 038698          170 GNVFKFPGGGTMFPQGADAYIDELASVIPI-KDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL---  245 (283)
Q Consensus       170 ~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~-~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~---  245 (283)
                      |-++..|.+...=|.. +.--+.|-.+|.. ..+  .+|||+-||||++|..-+.|+...  +..+|.+...++...   
T Consensus        12 g~~l~~~~~~~~RPt~-~~vrealFn~l~~~~~~--~~vLDlFaGsG~~glEalSRGA~~--v~fVE~~~~a~~~ik~Ni   86 (183)
T d2ifta1          12 GRKLPVLNSEGLRPTG-DRVKETLFNWLMPYIHQ--SECLDGFAGSGSLGFEALSRQAKK--VTFLELDKTVANQLKKNL   86 (183)
T ss_dssp             TCEEECC----------CHHHHHHHHHHHHHHTT--CEEEETTCTTCHHHHHHHHTTCSE--EEEECSCHHHHHHHHHHH
T ss_pred             CCEecCCCCCCcCcCc-HHHHHHHHHHhhhhccc--ceEeecccCccceeeeeeeeccee--eEEeecccchhhhHhhHH
Confidence            4556666543222211 2223334444431 123  489999999999999999998753  445666666654433   


Q ss_pred             Hc-CCC---eEEEecc---ccCCCCCCCceeeeee
Q 038698          246 ER-GVP---AVIGVLG---TIHLPYPSRAFDMAQC  273 (283)
Q Consensus       246 er-g~~---a~~~v~d---a~rLPFpd~SFDlV~c  273 (283)
                      ++ +..   ..+...+   ..........||+|++
T Consensus        87 ~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl  121 (183)
T d2ifta1          87 QTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  121 (183)
T ss_dssp             HHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             hhhcccccccccccccccccccccccCCcccEEEe
Confidence            22 332   2333233   2334455667999986

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=92.78  E-value=0.023  Score=48.36  Aligned_cols=79  Identities=10%  Similarity=0.071  Sum_probs=46.3

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc---CCeeEeeccccChHHHHHHHHH----cCCC--eEEEecc
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR---NVLTMSFAPRDNHEAQVQFALE----RGVP--AVIGVLG  257 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r---~v~~~sla~~D~s~a~vq~A~e----rg~~--a~~~v~d  257 (283)
                      ..++..|.++...     ++||+||+++|+-+.+|++.   +...++   .|..+...+.|++    .|..  ..+..++
T Consensus        48 g~~L~~L~~~~~~-----k~iLEiGT~~GyStl~la~al~~~g~v~t---ie~~~~~~~~A~~~~~~~g~~~~i~~~~g~  119 (227)
T d1susa1          48 GQFLSMLLKLINA-----KNTMEIGVYTGYSLLATALAIPEDGKILA---MDINKENYELGLPVIKKAGVDHKIDFREGP  119 (227)
T ss_dssp             HHHHHHHHHHHTC-----CEEEEECCGGGHHHHHHHHHSCTTCEEEE---EESCCHHHHHHHHHHHHTTCGGGEEEEESC
T ss_pred             HHHHHHHHHhcCC-----CcEEEecchhhhhHHHHHhhCCCCcEEEE---EeccchhHHHHHHHHHHhccccceeeeehH
Confidence            4566666666643     79999999999988888863   323333   3444444444432    2543  3343343


Q ss_pred             c----cCCC---CCCCceeeeee
Q 038698          258 T----IHLP---YPSRAFDMAQC  273 (283)
Q Consensus       258 a----~rLP---Fpd~SFDlV~c  273 (283)
                      +    .+|+   ..+++||+|+-
T Consensus       120 a~~~L~~l~~~~~~~~~fD~iFi  142 (227)
T d1susa1         120 ALPVLDEMIKDEKNHGSYDFIFV  142 (227)
T ss_dssp             HHHHHHHHHHCGGGTTCBSEEEE
T ss_pred             HHHHHHHHHhccccCCceeEEEe
Confidence            2    2221   23678999985

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.38  E-value=0.087  Score=43.17  Aligned_cols=80  Identities=18%  Similarity=0.137  Sum_probs=54.0

Q ss_pred             HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCC-eEEEeccc----cCC-CC
Q 038698          190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVP-AVIGVLGT----IHL-PY  263 (283)
Q Consensus       190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~-a~~~v~da----~rL-PF  263 (283)
                      ++++.+.|.+..|  .+++|..+|.|..+..|++++.   .+.++|..+.++..|.++..+ ..+....-    +.+ .+
T Consensus         7 l~Evl~~l~~~~g--~~~vD~T~G~GGhs~~iL~~~~---~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~   81 (182)
T d1wg8a2           7 YQEALDLLAVRPG--GVYVDATLGGAGHARGILERGG---RVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL   81 (182)
T ss_dssp             HHHHHHHHTCCTT--CEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred             HHHHHHhcCCCCC--CEEEEeCCCCcHHHHHHhcccC---cEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHc
Confidence            5566677766656  5899999999999999999764   456889999999888875332 22322221    111 23


Q ss_pred             CCCceeeeeec
Q 038698          264 PSRAFDMAQCS  274 (283)
Q Consensus       264 pd~SFDlV~cs  274 (283)
                      ..+.+|.|+.-
T Consensus        82 ~~~~vdgIl~D   92 (182)
T d1wg8a2          82 GVERVDGILAD   92 (182)
T ss_dssp             TCSCEEEEEEE
T ss_pred             CCCccCEEEEE
Confidence            45678887753

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=91.90  E-value=0.049  Score=44.52  Aligned_cols=35  Identities=26%  Similarity=0.536  Sum_probs=26.6

Q ss_pred             HHHHHHHhhCCC-CCCCccEEeecCCCccHHHHHHhhc
Q 038698          188 AYIDELASVIPI-KDGSVRTALDTGCGVASWGAYLLKR  224 (283)
Q Consensus       188 ~Yid~I~~~l~~-~~g~~r~VLDVGCGtGsfaa~L~~r  224 (283)
                      ..+.+|.+...+ +++  .+|||+||+.|.|..++.++
T Consensus         8 fKL~EI~~k~~l~k~~--~~vlDLg~aPGgw~q~~~~~   43 (180)
T d1ej0a_           8 FKLDEIQQSDKLFKPG--MTVVDLGAAPGGWSQYVVTQ   43 (180)
T ss_dssp             HHHHHHHHHHCCCCTT--CEEEEESCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhCccCCC--CeEEEEeccCCcceEEEEee
Confidence            346667777664 333  68999999999999988874

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=91.61  E-value=0.11  Score=46.99  Aligned_cols=84  Identities=19%  Similarity=0.221  Sum_probs=51.0

Q ss_pred             HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc----CCe--------eEeeccccChHHHHHHHHH----cCCC--
Q 038698          189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR----NVL--------TMSFAPRDNHEAQVQFALE----RGVP--  250 (283)
Q Consensus       189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r----~v~--------~~sla~~D~s~a~vq~A~e----rg~~--  250 (283)
                      -++.|.+++....+  .+|||-.||+|.|.....++    +..        ...+.+.|+.+.....|..    +|..  
T Consensus       150 Iv~~mv~ll~~~~~--~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~  227 (425)
T d2okca1         150 LIQAMVDCINPQMG--ETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD  227 (425)
T ss_dssp             HHHHHHHHHCCCTT--CCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS
T ss_pred             hhHhhheeccCccc--ceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccc
Confidence            47788888876444  68999999999998655442    110        1135567777766665542    2432  


Q ss_pred             -eEEEeccccCCCCCCCceeeeeecc
Q 038698          251 -AVIGVLGTIHLPYPSRAFDMAQCSR  275 (283)
Q Consensus       251 -a~~~v~da~rLPFpd~SFDlV~cs~  275 (283)
                       ..+...+.. -..+...||+|+++-
T Consensus       228 ~~~i~~~d~l-~~~~~~~fD~Ii~NP  252 (425)
T d2okca1         228 RSPIVCEDSL-EKEPSTLVDVILANP  252 (425)
T ss_dssp             CCSEEECCTT-TSCCSSCEEEEEECC
T ss_pred             cceeecCchh-hhhcccccceEEecC
Confidence             112323322 235678899999863

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=91.53  E-value=0.15  Score=44.43  Aligned_cols=37  Identities=19%  Similarity=0.320  Sum_probs=26.8

Q ss_pred             hhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc
Q 038698          186 ADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR  224 (283)
Q Consensus       186 a~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r  224 (283)
                      +...+.+|.+..-+..+  .+|+|+|||.|.|+.+++++
T Consensus        51 ~~~Kl~~~~~~~~~~~~--~~vvDlG~~pGgws~~~a~~   87 (257)
T d2p41a1          51 GSAKLRWFVERNLVTPE--GKVVDLGCGRGGWSYYCGGL   87 (257)
T ss_dssp             HHHHHHHHHHTTSSCCC--EEEEEETCTTSHHHHHHHTS
T ss_pred             HHHHHHHHHHhcCccCC--CeEEEecCCCChHHHHHHhh
Confidence            34445666666544433  47999999999999999876

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=91.07  E-value=0.16  Score=43.52  Aligned_cols=71  Identities=10%  Similarity=0.036  Sum_probs=41.1

Q ss_pred             cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHH---H-HHcCCCeE-EEeccccCCCC---CCCceeeeeeccc
Q 038698          205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQF---A-LERGVPAV-IGVLGTIHLPY---PSRAFDMAQCSRC  276 (283)
Q Consensus       205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~---A-~erg~~a~-~~v~da~rLPF---pd~SFDlV~cs~~  276 (283)
                      .++||||+|.|.-|.-|+=... ...+..+|...-.+.|   + .+-++... +....++.+.-   ....||+|+|..+
T Consensus        72 ~~ilDiGSGaGfPGi~laI~~p-~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRAv  150 (239)
T d1xdza_          72 NTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAV  150 (239)
T ss_dssp             CEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECC
T ss_pred             CeEEeecCCCchHHHHHHHhCC-CccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhhh
Confidence            6899999999987766553211 1234555666554444   2 33476543 33333444432   2468999998643

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.06  E-value=0.099  Score=46.08  Aligned_cols=87  Identities=16%  Similarity=0.018  Sum_probs=53.4

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc---------CCCeEEEecc
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER---------GVPAVIGVLG  257 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er---------g~~a~~~v~d  257 (283)
                      ..|.+.|...--.....+++||=||.|.|..+..++++.. ...+..+|+.++.++.|.+.         .....+...|
T Consensus        73 ~~YhE~l~h~pl~~~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~D  151 (295)
T d1inla_          73 FMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIAN  151 (295)
T ss_dssp             HHHHHHHHHHHHHHSSSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESC
T ss_pred             hhhhhhhcchhHhhCCCCceEEEecCCchHHHHHHHhcCC-CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhh
Confidence            4566655543211223568999999999999998888642 12355667778888877642         1223344444


Q ss_pred             c-cCCCCCCCceeeeeec
Q 038698          258 T-IHLPYPSRAFDMAQCS  274 (283)
Q Consensus       258 a-~rLPFpd~SFDlV~cs  274 (283)
                      + +-|-=.++.||+|+.-
T Consensus       152 a~~~l~~~~~~yDvIi~D  169 (295)
T d1inla_         152 GAEYVRKFKNEFDVIIID  169 (295)
T ss_dssp             HHHHGGGCSSCEEEEEEE
T ss_pred             HHHHHhcCCCCCCEEEEc
Confidence            2 1122245789999964

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.16  E-value=0.19  Score=43.81  Aligned_cols=122  Identities=16%  Similarity=0.127  Sum_probs=70.0

Q ss_pred             ceeeecccCCchhhhhhhhc--CceeecCCeeeeCCCCCCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHH
Q 038698          144 DYVHYANVPHKSLTVEKAVQ--NWVQFQGNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYL  221 (283)
Q Consensus       144 ~~~W~~n~p~~~L~~~k~~q--~w~~~~~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L  221 (283)
                      .++....-+|..+...+..+  +++.++|. +.+.-      .....|.+.|....-.....+++||-||-|.|..+..+
T Consensus        24 ~~l~~~~S~yQ~I~v~~~~~~g~~L~lDg~-~q~~~------~de~~Yhe~l~h~~l~~~~~pk~vLiiGgG~G~~~~~~   96 (285)
T d2o07a1          24 QLLHHRRSRYQDILVFRSKTYGNVLVLDGV-IQCTE------RDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREV   96 (285)
T ss_dssp             EEEEEEECSSSEEEEEEESSSCEEEEETTE-EEEET------TTHHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHH
T ss_pred             eEEEeCCCCCcEEEEEEeCCCCeEEEECCc-EEEec------CCHHHHHHHhccHhhhhCcCcCeEEEeCCCchHHHHHH
Confidence            34455566776655444222  45555543 32311      12245665554332222345689999999999999999


Q ss_pred             hhc-CCeeEeeccccChHHHHHHHHHc---------CCCeEEEeccc-cCCCCCCCceeeeeec
Q 038698          222 LKR-NVLTMSFAPRDNHEAQVQFALER---------GVPAVIGVLGT-IHLPYPSRAFDMAQCS  274 (283)
Q Consensus       222 ~~r-~v~~~sla~~D~s~a~vq~A~er---------g~~a~~~v~da-~rLPFpd~SFDlV~cs  274 (283)
                      ++. .+.  .+..+|+.++.++.|++.         .....+...|+ +-|--..+.||+|++-
T Consensus        97 l~~~~~~--~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D  158 (285)
T d2o07a1          97 VKHPSVE--SVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITD  158 (285)
T ss_dssp             TTCTTCC--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEE
T ss_pred             HHcCCcc--eeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEEc
Confidence            886 333  455677778888888642         12333444442 1122245789999974

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.09  E-value=0.11  Score=46.23  Aligned_cols=128  Identities=14%  Similarity=0.083  Sum_probs=74.8

Q ss_pred             CCCCC------ceeeecccCCchhhhhhhh--cCceeecCCeeeeCCCCCCCCCchhHHHHHHHhhCCCCCCCccEEeec
Q 038698          139 WPKGR------DYVHYANVPHKSLTVEKAV--QNWVQFQGNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDT  210 (283)
Q Consensus       139 wP~sr------~~~W~~n~p~~~L~~~k~~--q~w~~~~~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~~~g~~r~VLDV  210 (283)
                      ||.-.      .++....-+|..+...+..  -+++.++|+ +.+.-      .....|.+.|....-.....+++||-|
T Consensus        41 wpg~~~~~~v~~vl~~~~S~yQ~I~i~~~~~~G~~L~LDg~-~q~~e------~de~~YhE~l~h~pl~~~~~pk~VLIi  113 (312)
T d2b2ca1          41 WPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGI-VQATE------RDEFSYQEMLAHLPMFAHPDPKRVLII  113 (312)
T ss_dssp             CTTEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEETTE-EEEES------SSSSHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred             CCCceEEEEEEEEEEecCCCCeEEEEEEcCCcCCEEEECCc-eeeec------ccHHHHHHHhhhHHHhcCCCCCeEEEe
Confidence            77443      4555566777776544322  256666654 22311      112457766655321222356899999


Q ss_pred             CCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---------CCeEEEeccc-cCCCCCCCceeeeeec
Q 038698          211 GCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---------VPAVIGVLGT-IHLPYPSRAFDMAQCS  274 (283)
Q Consensus       211 GCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---------~~a~~~v~da-~rLPFpd~SFDlV~cs  274 (283)
                      |-|.|..+..+++... +..+..+++.++.++.|.+--         ....+...|+ +-|--.++.||+|+.-
T Consensus       114 GgG~G~~~rellk~~~-v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D  186 (312)
T d2b2ca1         114 GGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD  186 (312)
T ss_dssp             SCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred             CCCchHHHHHHHHcCC-cceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEEc
Confidence            9999999999988632 224566788888888887531         1123333332 1122246789999864

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=90.09  E-value=0.26  Score=43.26  Aligned_cols=79  Identities=18%  Similarity=0.114  Sum_probs=49.9

Q ss_pred             HHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH---Hc-CCCeE-EEeccccCCCCCCCc
Q 038698          193 LASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL---ER-GVPAV-IGVLGTIHLPYPSRA  267 (283)
Q Consensus       193 I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~---er-g~~a~-~~v~da~rLPFpd~S  267 (283)
                      ...++....|  .+|||+-+|.|.=+.+|++..-....+...|.++..++...   +| |+..+ +...+...++..+..
T Consensus       108 ~~~~l~~~~g--~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~  185 (313)
T d1ixka_         108 PPVALDPKPG--EIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVE  185 (313)
T ss_dssp             HHHHHCCCTT--CEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCC
T ss_pred             hhhcccCCcc--ceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccccccccc
Confidence            3445555556  58999999999755555542111113455677776655432   33 66543 444567778888899


Q ss_pred             eeeeee
Q 038698          268 FDMAQC  273 (283)
Q Consensus       268 FDlV~c  273 (283)
                      ||.|.+
T Consensus       186 fD~ILv  191 (313)
T d1ixka_         186 FDKILL  191 (313)
T ss_dssp             EEEEEE
T ss_pred             ccEEEE
Confidence            999975

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.02  E-value=0.28  Score=42.72  Aligned_cols=87  Identities=9%  Similarity=-0.000  Sum_probs=55.6

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc---------CCCeEEEecc
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER---------GVPAVIGVLG  257 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er---------g~~a~~~v~d  257 (283)
                      ..|.+.|....-....++++||=||-|.|..+..+++... ...+..+|+.++.++.|++-         .....+...|
T Consensus        64 ~~Yhe~l~h~~~~~~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~D  142 (290)
T d1xj5a_          64 CAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGD  142 (290)
T ss_dssp             HHHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESC
T ss_pred             hHHHHHHhhHHHhhCCCCcceEEecCCchHHHHHHHhccc-ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEcc
Confidence            4566666554333334578999999999999999888632 12456677888888887642         2223344444


Q ss_pred             c-cCC-CCCCCceeeeeec
Q 038698          258 T-IHL-PYPSRAFDMAQCS  274 (283)
Q Consensus       258 a-~rL-PFpd~SFDlV~cs  274 (283)
                      + +-+ -.+++.||+|+.-
T Consensus       143 a~~~l~~~~~~~yDvIi~D  161 (290)
T d1xj5a_         143 GVAFLKNAAEGSYDAVIVD  161 (290)
T ss_dssp             HHHHHHTSCTTCEEEEEEC
T ss_pred             HHHHHhhccccCccEEEEc
Confidence            2 222 2356799999963

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=89.95  E-value=0.16  Score=44.05  Aligned_cols=86  Identities=16%  Similarity=0.147  Sum_probs=53.2

Q ss_pred             hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc-----C----CCeEEEec
Q 038698          187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER-----G----VPAVIGVL  256 (283)
Q Consensus       187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er-----g----~~a~~~v~  256 (283)
                      ..|.+.|....-.....+++||-||-|.|..++.++++ ++.  .+..+|+.++.++.|.+-     +    ....+...
T Consensus        59 ~~Yhe~l~h~~l~~~~~p~~vLiiGgG~G~~~~~~l~~~~~~--~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~  136 (274)
T d1iy9a_          59 FVYHEMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVK--KATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVD  136 (274)
T ss_dssp             HHHHHHHHHHHHHHSSSCCEEEEESCTTCHHHHHHTTCTTCS--EEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEES
T ss_pred             hhchhhhccchhhccCCcceEEecCCCCcHHHHHHHhcCCcc--eEEEecCCHHHHHHHHHhChhhcccccCCCeEEEec
Confidence            45666554432222235689999999999999998886 333  345567778888877542     1    12334444


Q ss_pred             ccc-CCCCCCCceeeeeec
Q 038698          257 GTI-HLPYPSRAFDMAQCS  274 (283)
Q Consensus       257 da~-rLPFpd~SFDlV~cs  274 (283)
                      |+. -|--.++.||+|+.-
T Consensus       137 D~~~~l~~~~~~yDvIi~D  155 (274)
T d1iy9a_         137 DGFMHIAKSENQYDVIMVD  155 (274)
T ss_dssp             CSHHHHHTCCSCEEEEEES
T ss_pred             hHHHHHhhcCCCCCEEEEc
Confidence            421 122346889999864

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.44  E-value=0.38  Score=41.65  Aligned_cols=77  Identities=9%  Similarity=0.003  Sum_probs=45.9

Q ss_pred             hhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH---Hc-CCCe-EEEeccccCCCCCC---C
Q 038698          195 SVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL---ER-GVPA-VIGVLGTIHLPYPS---R  266 (283)
Q Consensus       195 ~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~---er-g~~a-~~~v~da~rLPFpd---~  266 (283)
                      .++....|  .+|||+.+|.|.=+.+|++.--....+..+|+++..++...   +| |+.. .+...+...++-.+   .
T Consensus        88 ~~L~~~~g--~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~  165 (293)
T d2b9ea1          88 MLLDPPPG--SHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYH  165 (293)
T ss_dssp             HHHCCCTT--CEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGT
T ss_pred             cccCCCcc--ceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccc
Confidence            34444445  58999999999877777653100113456677776655433   33 7654 34445655554333   5


Q ss_pred             ceeeeee
Q 038698          267 AFDMAQC  273 (283)
Q Consensus       267 SFDlV~c  273 (283)
                      .||.|.+
T Consensus       166 ~fD~VL~  172 (293)
T d2b9ea1         166 EVHYILL  172 (293)
T ss_dssp             TEEEEEE
T ss_pred             eeeEEee
Confidence            6999875

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=86.63  E-value=0.31  Score=41.93  Aligned_cols=83  Identities=12%  Similarity=0.029  Sum_probs=47.4

Q ss_pred             HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc---CC--------CeEEEecc-c
Q 038698          191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER---GV--------PAVIGVLG-T  258 (283)
Q Consensus       191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er---g~--------~a~~~v~d-a  258 (283)
                      +.|.+.+.++.+...+|||.=||.|..+..|+..+..+..+...-.--+.++-+++|   ..        ...+..+| .
T Consensus        76 ~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~  155 (250)
T d2oyra1          76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL  155 (250)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH
T ss_pred             hHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHH
Confidence            356677776555445899999999999988888755433332221112223333322   11        12333344 2


Q ss_pred             cCCCCCCCceeeeee
Q 038698          259 IHLPYPSRAFDMAQC  273 (283)
Q Consensus       259 ~rLPFpd~SFDlV~c  273 (283)
                      +-|.=.+.+||+|..
T Consensus       156 ~~L~~~~~~~DvIYl  170 (250)
T d2oyra1         156 TALTDITPRPQVVYL  170 (250)
T ss_dssp             HHSTTCSSCCSEEEE
T ss_pred             HHHhccCCCCCEEEE
Confidence            334444678999975

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=83.76  E-value=0.27  Score=45.82  Aligned_cols=33  Identities=12%  Similarity=0.126  Sum_probs=25.1

Q ss_pred             HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHh
Q 038698          188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLL  222 (283)
Q Consensus       188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~  222 (283)
                      .-++.|.+++....+  .+|+|-.||+|.|.....
T Consensus       151 ~Iv~~mv~ll~~~~~--~~i~DPacGsG~fL~~a~  183 (524)
T d2ar0a1         151 PLIKTIIHLLKPQPR--EVVQDPAAGTAGFLIEAD  183 (524)
T ss_dssp             HHHHHHHHHHCCCTT--CCEEETTCTTTHHHHHHH
T ss_pred             chhHhhhhcccCccc--hhhcchhhhcchhhHHHH
Confidence            347788888876555  589999999999975443

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=81.37  E-value=0.54  Score=42.42  Aligned_cols=25  Identities=20%  Similarity=0.357  Sum_probs=21.0

Q ss_pred             cccCCCCCCCceeeeeeccccccccc
Q 038698          257 GTIHLPYPSRAFDMAQCSRCLIPWTS  282 (283)
Q Consensus       257 da~rLPFpd~SFDlV~cs~~Li~W~~  282 (283)
                      +-+.==||++|.|++||+-+| +|.+
T Consensus       129 SFY~rLfP~~Slh~~~Ss~al-HWLS  153 (359)
T d1m6ex_         129 SFYGRLFPRNTLHFIHSSYSL-MWLS  153 (359)
T ss_dssp             CSSSCCSCTTCBSCEEEESCT-TBCS
T ss_pred             chhhhcCCCCceEEeeehhhh-hhhh
Confidence            345555999999999999999 9975

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.07  E-value=0.89  Score=38.97  Aligned_cols=77  Identities=16%  Similarity=0.088  Sum_probs=45.0

Q ss_pred             HhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHH---HHHHc-CCCeEEEeccccCC--CCCCCc
Q 038698          194 ASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQ---FALER-GVPAVIGVLGTIHL--PYPSRA  267 (283)
Q Consensus       194 ~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq---~A~er-g~~a~~~v~da~rL--PFpd~S  267 (283)
                      ..++....|  .+|||+-+|.|.=+.+|++.... ..+...|.++..++   ...+| |+.....+.+....  +...+.
T Consensus        95 ~~~L~~~~g--~~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~  171 (284)
T d1sqga2          95 MTWLAPQNG--EHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQ  171 (284)
T ss_dssp             HHHHCCCTT--CEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCC
T ss_pred             ccccCcccc--ceeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhccccc
Confidence            344555445  68999999999877777664222 13445566554433   23333 77665544432222  235678


Q ss_pred             eeeeee
Q 038698          268 FDMAQC  273 (283)
Q Consensus       268 FDlV~c  273 (283)
                      ||.|.+
T Consensus       172 fd~IL~  177 (284)
T d1sqga2         172 FDRILL  177 (284)
T ss_dssp             EEEEEE
T ss_pred             ccEEEE
Confidence            999974