Citrus Sinensis ID: 038703

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MASQGVFGSINQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDEGYFFTQLENRDGKGQPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGKPPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKKESGNKRSEAGKKKNLPVRKKTKAC
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccEEEEEEccccccccccccccccccccEEEEcccccccccccccccccccccccccccccEEEEcccEEEEEEEEEEEccccccccccccEEEEcccccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEEEEccccccccccHccccccccEEEEEcccccccccccccccccccEEEEccccccEcccccEEEEEEEEEEEcccccccccccEEEEEEEcccccccccccccccccccccEEEEEEEEccccccccccccccccccHHHHHccc
Coil and Loop (DISEMBL)
masqgvfgsinqeeefdlplgyrfspngQEIIVQYLTKKIlnqrlpsniikdidlyaydhprqlpigefknckpdegyfftqlenrdgkgqpkrttksgywkdtgkVEQIIWNNSIVGFKKILVFyegkpptgtrsrwvmhefrvnpsylsaFALDITTQTEVVNYVACKIhhkkesgnkrseagkkknlpvrkktkac
Flexible Loop (DISEMBL)
MASQGVFGSINQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDEGYFFTqlenrdgkgqpkrttksgywkdtgkveQIIWNNSIVGFKKILVFYEGKPPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIhhkkesgnkrseagkkknlpvrkktkac
Low Complexity Region (SEG)
MASQGVFGSINQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDEGYFFTQLENRDGKGQPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGKPPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKKESGNKRSEAGKKKNLPVRKKTKAC
Disordered region (IsUnstruct)
**************EFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDEGYFFTQL***************GYWKDTGKVEQIIWNNSIVGFKKILVFYEGKPPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIH***************************
Disordered Region (DISOPRED)
*******************LGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDEGYFFTQLENRDGKGQPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGKPPTGTRSRWVMHEFRVNPS***************VNYVACKIH***************************
Disordered Region (DISEMBL)
********SINQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDEGYFFTQLENR************GYWKDTGKVEQIIWNNSIVGFKKILVFYEGKPPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHH**************************
Disordered Region (DISPRO)
****************DLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDEGYFFTQLENRDGKGQPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGKPPTGTRSRWVMHEFRVNPS***********QTEVVNYVACKIHHKKE***********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASQGVFGSINQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDEGYFFTQLENRDGKGQPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGKPPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKKESGNKRSEAGKKKNLPVRKKTKAC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
A2YMR0	425	NAC transcription factor	N/A	no	0.819	0.383	0.381	5e-26
Q8H4S4	425	NAC transcription factor	yes	no	0.819	0.383	0.376	3e-25
Q8GY42	323	NAC transcription factor	no	no	0.768	0.473	0.418	1e-24
Q9FLJ2	336	NAC domain-containing pro	no	no	0.793	0.470	0.385	1e-24
Q7EZT1	276	NAC domain-containing pro	no	no	0.834	0.601	0.350	5e-24
O49255	268	NAC transcription factor	no	no	0.768	0.570	0.383	6e-24
Q52QH4	318	NAC domain-containing pro	no	no	0.874	0.547	0.362	1e-23
Q93VY3	297	NAC domain-containing pro	no	no	0.788	0.528	0.386	1e-23
A0SPJ4	405	NAC transcription factor	N/A	no	0.839	0.412	0.345	4e-23
A0SPJ8	406	NAC transcription factor	N/A	no	0.638	0.312	0.419	6e-23

>sp|A2YMR0|NAC10_ORYSI NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1

 Score =  117 bits (293), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/186 (38%), Positives = 101/186 (54%), Gaps = 23/186 (12%)

Query: 17  DLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDE 76
           +LP G+RF P  +E++V YL KK  +  LP  II ++DLY +D P +LP  E  N    E
Sbjct: 28  ELPPGFRFHPTDEELVVHYLKKKAASVPLPVTIIAEVDLYKFD-PWELP--EKANFGEQE 84

Query: 77  GYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNSI---VGFKKILVFYEGKPPT 132
            YFF+  + +   G +P R   SGYWK TG  + I+ + S    VG KK LVFY GKPP 
Sbjct: 85  WYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMASGSTREKVGVKKALVFYRGKPPK 144

Query: 133 GTRSRWVMHEFRVNPSYLSAFALDITTQT--------------EVVNYVACKIHHK--KE 176
           G ++ W+MHE+R+  +  SA A+  T Q                + ++V C+I+ K  K 
Sbjct: 145 GVKTNWIMHEYRLTDTSSSAAAVATTRQPPPPITGGSRGAVSLRLDDWVLCRIYKKTNKA 204

Query: 177 SGNKRS 182
              +RS
Sbjct: 205 GAGQRS 210

Transcription factor of the NAC family associated with male fertility.
Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8H4S4|NAC10_ORYSJ NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1

 Score =  115 bits (287), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 99/186 (53%), Gaps = 23/186 (12%)

Query: 17  DLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDE 76
           +LP G+RF P  +E++V YL KK  +  LP  II ++DLY +D P  LP  E  N    E
Sbjct: 28  ELPPGFRFHPTDEELVVHYLKKKAASVPLPVTIIAEVDLYKFD-PWDLP--EKANFGEQE 84

Query: 77  GYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNSI---VGFKKILVFYEGKPPT 132
            YFF+  + +   G +P R   SGYWK TG  + I+ + S    VG KK LVFY GKPP 
Sbjct: 85  WYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMSSGSTREKVGVKKALVFYRGKPPK 144

Query: 133 GTRSRWVMHEFRVNPSYLSAFALDIT--------------TQTEVVNYVACKIHHK--KE 176
           G ++ W+MHE+R+  +  SA A+  T                  + ++V C+I+ K  K 
Sbjct: 145 GVKTNWIMHEYRLTDTSSSAAAVATTRRPPPPITGGSKGAVSLRLDDWVLCRIYKKTNKA 204

Query: 177 SGNKRS 182
              +RS
Sbjct: 205 GAGQRS 210

Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GY42|NAC25_ARATH NAC transcription factor 25 OS=Arabidopsis thaliana GN=NAC025 PE=2 SV=1

 Score =  113 bits (282), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 97/172 (56%), Gaps = 19/172 (11%)

Query: 18  LPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLP----IGEFKNCK 73
           LP G+RF P  +E++V YL KK  +  LP +II +IDLY +D P +LP     GE     
Sbjct: 16  LPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFD-PWELPSKASFGEH---- 70

Query: 74  PDEGYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNSI-VGFKKILVFYEGKPP 131
             E YFF+  + +   G +P R   SGYWK TG  + I   NS  VG KK LVFY GKPP
Sbjct: 71  --EWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHKVGVKKALVFYGGKPP 128

Query: 132 TGTRSRWVMHEFRVNPSYLSAFA--LDITT----QTEVVNYVACKIHHKKES 177
            G ++ W+MHE+R+    LS  A   D+TT       + ++V C+I+ K  S
Sbjct: 129 KGIKTDWIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDDWVLCRIYKKNSS 180

Transcription factor of the NAC family. May be associated with anther development and pollen production.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/174 (38%), Positives = 98/174 (56%), Gaps = 16/174 (9%)

Query: 12  QEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLP----IG 67
           +EE+ DLP G+RF P  +E+I  YL KK+L+    +  I ++DL   + P +LP    +G
Sbjct: 10  EEEQMDLPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSE-PWELPWMAKMG 68

Query: 68  EFKNCKPDEGYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFY 126
           E       E YFF   + +   G +  R T++GYWK TGK ++I    S+VG KK LVFY
Sbjct: 69  E------KEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFY 122

Query: 127 EGKPPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKKESGNK 180
            G+ P G ++ WVMHE+R+   + SA  L  T + E   +V C++  K   G K
Sbjct: 123 RGRAPKGQKTNWVMHEYRLEGKF-SAHNLPKTAKNE---WVICRVFQKSAGGKK 172

Arabidopsis thaliana (taxid: 3702)

>sp|Q7EZT1|NAC67_ORYSJ NAC domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=NAC67 PE=2 SV=1

 Score =  110 bits (276), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 5/171 (2%)

Query: 11  NQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFK 70
           + E + +LP G+RF P  +E++  YL  +   +  P  II ++DLY +D P  LP     
Sbjct: 10  DAEADLNLPPGFRFHPTDEELVAHYLCPRAAGRAAPVPIIAELDLYRHD-PWDLPHRALF 68

Query: 71  NCKPDEGYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGK 129
             +  E YFFT  + +   G +P R   SGYWK TG  + ++ N    G KK LVFY GK
Sbjct: 69  GRR--EWYFFTPRDRKYPNGSRPNRAAASGYWKATGADKPVLHNGRTAGIKKALVFYHGK 126

Query: 130 PPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKKESGNK 180
           PP G ++ W+MHE+R+      A A        + ++V C++++KK    K
Sbjct: 127 PPRGVKTEWIMHEYRLA-KKGGAAAAAGAGALRLDDWVLCRLYNKKNEWEK 176

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O49255|NAC29_ARATH NAC transcription factor 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1

 Score =  110 bits (275), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 97/159 (61%), Gaps = 6/159 (3%)

Query: 18  LPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDEG 77
           LP G+RF P  +E+IV YL  + +++  P +II ++D+Y +D P QLP  E      +E 
Sbjct: 9   LPPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFD-PWQLP--EKTEFGENEW 65

Query: 78  YFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGKPPTGTRS 136
           YFF+  E +   G +P R   SGYWK TG  + I   +S VG KK LVFY+G+PP G ++
Sbjct: 66  YFFSPRERKYPNGVRPNRAAVSGYWKATGTDKAIHSGSSNVGVKKALVFYKGRPPKGIKT 125

Query: 137 RWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKK 175
            W+MHE+R++ S  ++   + + + +   +V C+I+ K+
Sbjct: 126 DWIMHEYRLHDSRKASTKRNGSMRLD--EWVLCRIYKKR 162

May function in the transition between active cell division and cell expansion.

Arabidopsis thaliana (taxid: 3702)

>sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1

 Score =  109 bits (273), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 98/182 (53%), Gaps = 8/182 (4%)

Query: 2   ASQGVFGSINQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHP 61
           A+ G  G  + E E +LP G+RF P  +E++V YL +K+  Q LP  II ++DLY  D P
Sbjct: 5   AAVGGSGRRDAEAELNLPPGFRFHPTDEELVVHYLCRKVARQPLPVPIIAEVDLYKLD-P 63

Query: 62  RQLPIGEFKNCKPDEGYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNS--IVG 118
             LP       K  E YFFT  + +   G +P R    GYWK TG  + +    S   VG
Sbjct: 64  WDLPEKALFGRK--EWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPVAPKGSARTVG 121

Query: 119 FKKILVFYEGKPPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKKESG 178
            KK LVFY GK P G ++ W+MHE+R+  +  +      + + +   +V C++++KK + 
Sbjct: 122 IKKALVFYSGKAPRGVKTDWIMHEYRLADADRAPGGKKGSQKLD--EWVLCRLYNKKNNW 179

Query: 179 NK 180
            K
Sbjct: 180 EK 181

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93VY3|NAC72_ARATH NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1

 Score =  109 bits (273), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 94/168 (55%), Gaps = 11/168 (6%)

Query: 15  EFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKP 74
           +  LP G+RF P  +E++VQYL +K+        +I DIDLY +D P  LP       K 
Sbjct: 11  QLSLPPGFRFYPTDEELLVQYLCRKVAGYHFSLQVIGDIDLYKFD-PWDLPSKALFGEK- 68

Query: 75  DEGYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGKPPTG 133
            E YFF+  + +   G +P R   SGYWK TG  + I  +   VG KK LVFY GK P G
Sbjct: 69  -EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITADGRRVGIKKALVFYAGKAPKG 127

Query: 134 TRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKKESGNKR 181
           T++ W+MHE+R+     S         +++ ++V C+I +KK SG++R
Sbjct: 128 TKTNWIMHEYRLIEHSRS------HGSSKLDDWVLCRI-YKKTSGSQR 168

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|A0SPJ4|NAMB1_TRIDC NAC transcription factor NAM-B1 OS=Triticum dicoccoides GN=NAM-B1 PE=4 SV=1

 Score =  107 bits (268), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 100/191 (52%), Gaps = 24/191 (12%)

Query: 17  DLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDE 76
           +LP G+RF P  +E++V YL KK     LP NII ++DLY +D P +LP  E       E
Sbjct: 33  ELPPGFRFHPTDEELVVHYLKKKADKAPLPVNIIAEVDLYKFD-PWELP--EKATIGEQE 89

Query: 77  GYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNS-------IVGFKKILVFYEG 128
            YFF+  + +   G +P R   SGYWK TG  + I+ + +        +G KK LVFY G
Sbjct: 90  WYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASGTGCGLVREKLGVKKALVFYRG 149

Query: 129 KPPTGTRSRWVMHEFRVNPSYLSAFALD----------ITTQTEVVNYVACKIHHKKESG 178
           KPP G ++ W+MHE+R+  +  S  A +                + ++V C+I+ K    
Sbjct: 150 KPPKGLKTNWIMHEYRLTDASGSTTATNRPPPVTGGSRAAASLRLDDWVLCRIYKKI--- 206

Query: 179 NKRSEAGKKKN 189
           NK +   +++N
Sbjct: 207 NKAAAGDQQRN 217

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) and the hexaploid wheat (T.aestivum) carry a one bp insertion generating a non-functional allele of this gene. They have a delayed senescence and a lower grain protein, zinc and iron content (PubMed:17124321).

Triticum dicoccoides (taxid: 85692)

>sp|A0SPJ8|NAM1_HORVD NAC transcription factor NAM-1 OS=Hordeum vulgare var. distichum GN=NAM-1 PE=4 SV=1

 Score =  107 bits (266), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 57/136 (41%), Positives = 79/136 (58%), Gaps = 9/136 (6%)

Query: 17  DLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDE 76
           +LP G+RF P  +E++V YL KK     LP  II ++DLY +D P +LP  E       E
Sbjct: 34  ELPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFD-PWELP--EKATFGEHE 90

Query: 77  GYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNS-----IVGFKKILVFYEGKP 130
            YFF+  + +   G +P R   SGYWK TG  + I+ + +      VG KK LVFY GKP
Sbjct: 91  WYFFSPRDRKYANGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVFYRGKP 150

Query: 131 PTGTRSRWVMHEFRVN 146
           P G ++ W+MHE+R+ 
Sbjct: 151 PRGLKTNWIMHEYRLT 166

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
255542074	279	transcription factor, putative [Ricinus	0.638	0.455	0.480	4e-27
351724343	229	NAC domain protein [Glycine max] gi|1879	0.809	0.703	0.414	3e-26
224135051	335	NAC domain protein, IPR003441 [Populus t	0.753	0.447	0.405	6e-26
255544902	522	conserved hypothetical protein [Ricinus	0.894	0.340	0.383	6e-26
255629857	229	unknown [Glycine max]	0.809	0.703	0.409	8e-26
155965519	300	NAC-like protein 14 [Crocus sativus]	0.819	0.543	0.393	1e-25
449468834	238	PREDICTED: NAC transcription factor NAM-	0.849	0.710	0.408	1e-25
443682294	255	NAC protein 7 [Gossypium hirsutum]	0.804	0.627	0.427	2e-25
312282075	250	unnamed protein product [Thellungiella h	0.804	0.64	0.418	2e-25
449484695	238	PREDICTED: LOW QUALITY PROTEIN: NAC tran	0.849	0.710	0.403	9e-25

>gi|255542074|ref|XP_002512101.1| transcription factor, putative [Ricinus communis] gi|223549281|gb|EEF50770.1| transcription factor, putative [Ricinus communis]

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/129 (48%), Positives = 81/129 (62%), Gaps = 2/129 (1%)

Query: 21  GYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDEGYFF 80
           GYRFSPN  E+I+ YL +KIL    P +II+++D+Y  D P QLPI EFK+  P E YFF
Sbjct: 120 GYRFSPNDYELIIYYLAQKILGMPRPLDIIQEVDVYKCD-PEQLPIDEFKHALPGEAYFF 178

Query: 81  TQ-LENRDGKGQPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGKPPTGTRSRWV 139
           T+ +     K   +RT  +GYWK T K   +      VG+KK +VFY GK P G R+ W+
Sbjct: 179 TRKVRKHSNKSSSRRTIGTGYWKATDKETIVTRRKKCVGYKKTMVFYRGKAPKGKRTHWI 238

Query: 140 MHEFRVNPS 148
           M E+RVN S
Sbjct: 239 MDEYRVNAS 247

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724343|ref|NP_001238078.1| NAC domain protein [Glycine max] gi|187940283|gb|ACD39372.1| NAC domain protein [Glycine max]

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/176 (41%), Positives = 105/176 (59%), Gaps = 15/176 (8%)

Query: 15  EFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKP 74
           E  LP G+RF P  +E+++QYL +K+ +  LP++II ++D+   D P  LP G+ +    
Sbjct: 11  ELRLPPGFRFHPTDEELVLQYLKRKVFSCPLPASIIPEVDVCKSD-PWDLP-GDLEQ--- 65

Query: 75  DEGYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWN--NSIVGFKKILVFYEGKPP 131
            E YFF+  E +   G +  R T SGYWK TG  +QI+ +  N +VG KK LVFY GKPP
Sbjct: 66  -ERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQIVTSKGNQVVGMKKTLVFYRGKPP 124

Query: 132 TGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKKESGNKRSEAGKK 187
            G+R+ W+MHE+R+N   L+A    +  +    N+V C+I  KK SG K  E   K
Sbjct: 125 HGSRTDWIMHEYRLN--ILNASQSHVPME----NWVLCRIFLKKRSGAKNGEESNK 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135051|ref|XP_002321971.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222868967|gb|EEF06098.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 97/158 (61%), Gaps = 8/158 (5%)

Query: 17  DLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDE 76
           ++P GYRFSPN  ++IV YL KKIL Q+LP+++I   D+YA   P +LP+ +FK    +E
Sbjct: 9   NVPTGYRFSPNDDDLIVHYLKKKILGQQLPADVIPTTDVYA-SSPDKLPLDDFKGGVANE 67

Query: 77  GYFF-TQLENRDGKGQPKRTTKSGYWK-DTGKVEQIIWNNSIVGFKKILVFYEGKPPTGT 134
            +FF T+ E+ D        T++GY+  D      I W + IVG+ K L FY+G PP G+
Sbjct: 68  WFFFSTRSEDAD-----IILTENGYYAVDPEGTAPIAWKDKIVGYAKTLTFYQGSPPNGS 122

Query: 135 RSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIH 172
            + W++ EF VN  ++     D++TQ +  N+V CKI+
Sbjct: 123 ETDWMVEEFSVNAEFVPINKDDLSTQEKKANFVVCKIY 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544902|ref|XP_002513512.1| conserved hypothetical protein [Ricinus communis] gi|223547420|gb|EEF48915.1| conserved hypothetical protein [Ricinus communis]

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/185 (38%), Positives = 108/185 (58%), Gaps = 7/185 (3%)

Query: 11  NQEEEFD-LPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEF 69
           N  E FD  P GYRF P+ +E+I+ YL +K+ +Q LP N I  +DLY ++ P  L   ++
Sbjct: 99  NDLEFFDSFPAGYRFCPSDEELIIHYLRRKVHDQILPPNKIISLDLYNFN-PEFL-AEKY 156

Query: 70  KNCKPDEGYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEG 128
            N   +E YFFT    +   G +P+R+   GYWK TG  ++I   + +VGF+K LVFY G
Sbjct: 157 ANYGENEWYFFTPRAKKYKNGNRPRRSADGGYWKATGADKEIKCRDIVVGFRKALVFYTG 216

Query: 129 KPPTGTRSRWVMHEFRVN-PSYLSAFALDITTQTEVV--NYVACKIHHKKESGNKRSEAG 185
           KPP+G ++ W+MHE+RV+ P  L     D  T   +   ++V C+I+ K E  N R    
Sbjct: 217 KPPSGVKTNWIMHEYRVDKPPPLRKRKRDDGTDDNMTLDDWVLCRIYKKSEKPNVRIRKA 276

Query: 186 KKKNL 190
           ++ ++
Sbjct: 277 EEPDM 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255629857|gb|ACU15279.1| unknown [Glycine max]

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/176 (40%), Positives = 105/176 (59%), Gaps = 15/176 (8%)

Query: 15  EFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKP 74
           E  LP G+RF P  +E+++QYL +K+ +  LP++II ++D+   D P  LP G+ +    
Sbjct: 11  ELRLPPGFRFHPTDEELVLQYLKRKVFSCPLPTSIIPEVDVCKSD-PWDLP-GDLEQ--- 65

Query: 75  DEGYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWN--NSIVGFKKILVFYEGKPP 131
            E YFF+  E +   G +  R T SGYWK +G  +QI+ +  N +VG KK LVFY GKPP
Sbjct: 66  -ERYFFSTKEAKYPNGNRSNRATNSGYWKASGLDKQIVTSKGNQVVGMKKTLVFYRGKPP 124

Query: 132 TGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKKESGNKRSEAGKK 187
            G+R+ W+MHE+R+N   L+A    +  +    N+V C+I  KK SG K  E   K
Sbjct: 125 HGSRTDWIMHEYRLN--ILNASQSHVPME----NWVLCRIFLKKRSGAKNGEESNK 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|155965519|gb|ABU40779.1| NAC-like protein 14 [Crocus sativus]

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/173 (39%), Positives = 101/173 (58%), Gaps = 10/173 (5%)

Query: 9   SINQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGE 68
           + + E   +LP G+RF P  +E++V YL KKI++QRLP+ II ++DLY Y +P QLP   
Sbjct: 5   TADAEANLNLPPGFRFHPTDEELVVHYLCKKIISQRLPAAIIAEVDLYKY-YPWQLPEKA 63

Query: 69  FKNCKPDEGYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQII---WNNSIVGFKKILV 124
               K  E YF T  + +   G +P R    GYWK TG  + I     ++  +G KK LV
Sbjct: 64  LFGHK--EWYFLTPRDRKYPNGSRPNRAAGRGYWKATGADKPIAPKGGSSKPLGIKKALV 121

Query: 125 FYEGKPPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKKES 177
           FY GK P GT++ W+MHE+R+  S+ +A          + ++V C+++HKK S
Sbjct: 122 FYSGKAPRGTKTDWIMHEYRLADSHRTA---SKKGSLRLDDWVLCRLYHKKNS 171

Source: Crocus sativus

Species: Crocus sativus

Genus: Crocus

Family: Iridaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468834|ref|XP_004152126.1| PREDICTED: NAC transcription factor NAM-2-like [Cucumis sativus]

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/181 (40%), Positives = 104/181 (57%), Gaps = 12/181 (6%)

Query: 18  LPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDEG 77
           LP G+RF P  +E+++QYL K+ L+  LP+ +I D D+  +D P  LP G+ +     E 
Sbjct: 14  LPPGFRFYPTDEELVLQYLIKRALSSPLPAAVIPDADVCRFD-PWDLP-GDLER----ER 67

Query: 78  YFFTQLENRDGKGQ-PKRTTKSGYWKDTGKVEQIIWN--NSIVGFKKILVFYEGKPPTGT 134
           YFF+  E +   G+   R T SGYWK TG   +I+    N ++GFKK LVFY GKPP G 
Sbjct: 68  YFFSTREAKYSNGRRSNRATGSGYWKATGIDRKIVSTKENRLIGFKKTLVFYTGKPPNGL 127

Query: 135 RSRWVMHEFRV---NPSYLSAFALDITTQTEVVNYVACKIHHKKESGNKRSEAGKKKNLP 191
           R+ WVMHE+R+   + +  S+F   +   T   N+V C+I  KK S  +R E  K    P
Sbjct: 128 RTDWVMHEYRLVGSSEAPPSSFNDGLELPTLNPNWVLCRIFLKKRSTRERDEKKKNNCKP 187

Query: 192 V 192
           V
Sbjct: 188 V 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|443682294|gb|AGC97437.1| NAC protein 7 [Gossypium hirsutum]

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/173 (42%), Positives = 102/173 (58%), Gaps = 13/173 (7%)

Query: 18  LPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDEG 77
           LP G+RF P  +E++VQYL +K+L+  LP++II ++D+   D P  LP G+ +     E 
Sbjct: 15  LPPGFRFHPTDEELVVQYLRRKVLSWPLPASIIPEVDVCKAD-PWDLP-GDLEQ----ER 68

Query: 78  YFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIW--NNSIVGFKKILVFYEGKPPTGT 134
           YFF+  E +   G +  R T SGYWK TG  +Q++    N +VG KK LVFY GKPP GT
Sbjct: 69  YFFSTREAKYPNGNRSNRATLSGYWKATGIDKQVVSCSGNQVVGMKKTLVFYRGKPPQGT 128

Query: 135 RSRWVMHEFR-VNPSYLSAFALDITTQTEVV---NYVACKIHHKKESGNKRSE 183
           R+ W+MHE+R V     +A      TQ  +V   N+V C+I  KK SG    E
Sbjct: 129 RTDWIMHEYRLVTADTCNAPHKKNQTQNHLVAVENWVLCRIFLKKRSGATNRE 181

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282075|dbj|BAJ33903.1| unnamed protein product [Thellungiella halophila]

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/177 (41%), Positives = 106/177 (59%), Gaps = 17/177 (9%)

Query: 18  LPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDEG 77
           LP G+RF P  +E++VQYL +K+L+  LP++II D D+   D P  LP    K     E 
Sbjct: 14  LPPGFRFHPTDEELVVQYLKRKVLSSPLPASIIPDFDVCRAD-PWDLPGNLDK-----ER 67

Query: 78  YFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWN--NSIVGFKKILVFYEGKPPTGT 134
           YFF+  E +   G +  R T SGYWK TG  ++++ +  N IVG KK LVFY+GKPP G+
Sbjct: 68  YFFSTREAKYPNGNRSNRATGSGYWKATGIDKRVVTSRGNQIVGLKKTLVFYKGKPPHGS 127

Query: 135 RSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKKESGNKR-SEAGKKKNL 190
           R+ W+MHE+R++ S  S+          + N+V C+I  KK +GNK   + G  +NL
Sbjct: 128 RTDWIMHEYRLSSSPPSSMG-------PIQNWVLCRIFLKKRAGNKSDDDDGDNRNL 177

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484695|ref|XP_004156954.1| PREDICTED: LOW QUALITY PROTEIN: NAC transcription factor NAM-2-like [Cucumis sativus]

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 73/181 (40%), Positives = 103/181 (56%), Gaps = 12/181 (6%)

Query: 18  LPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDEG 77
           LP G+RF P  +E+++QYL K+ L+  LP+ +I D D+  +D P  LP G+ +     E 
Sbjct: 14  LPPGFRFYPTDEELVLQYLIKRALSSPLPAAVIPDADVCRFD-PWDLP-GDLER----ER 67

Query: 78  YFFTQLENRDGKGQ-PKRTTKSGYWKDTGKVEQIIWN--NSIVGFKKILVFYEGKPPTGT 134
           Y F+  E +   G+   R T SGYWK TG   +I+    N ++GFKK LVFY GKPP G 
Sbjct: 68  YXFSTREAKYSNGRRSNRATGSGYWKATGIDRKIVSTKENRLIGFKKTLVFYTGKPPNGL 127

Query: 135 RSRWVMHEFRV---NPSYLSAFALDITTQTEVVNYVACKIHHKKESGNKRSEAGKKKNLP 191
           R+ WVMHE+R+   + +  S+F   +   T   N+V C+I  KK S  +R E  K    P
Sbjct: 128 RTDWVMHEYRLVGSSEAPPSSFNDGLELPTLNPNWVLCRIFLKKRSTRERDEKKKNNCKP 187

Query: 192 V 192
           V
Sbjct: 188 V 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
TAIR|locus:2179877	252	NAC083 "NAC domain containing	0.804	0.634	0.418	2.4e-28
TAIR|locus:2160324	329	NAC080 "NAC domain containing	0.859	0.519	0.390	2.2e-27
TAIR|locus:2051053	268	NAC041 "NAC domain containing	0.889	0.660	0.376	4.5e-27
TAIR|locus:2163153	336	NAC100 "NAC domain containing	0.834	0.494	0.379	2.5e-26
TAIR|locus:2008490	323	NAC025 "NAC domain containing	0.788	0.486	0.416	6.6e-26
TAIR|locus:2087037	318	NAC3 "NAC domain containing pr	0.829	0.518	0.363	8.4e-26
TAIR|locus:2164895	285	NAC6 "NAC domain containing pr	0.824	0.575	0.366	1.1e-25
TAIR|locus:2172334	335	ANAC087 "Arabidopsis NAC domai	0.924	0.549	0.356	1.8e-25
TAIR|locus:2007166	268	NAP "NAC-like, activated by AP	0.788	0.585	0.384	2.2e-25
TAIR|locus:2011516	320	NAM "NO APICAL MERISTEM" [Arab	0.809	0.503	0.369	9.7e-25

TAIR|locus:2179877 NAC083 "NAC domain containing protein 83" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 74/177 (41%), Positives = 107/177 (60%)

Query:    18 LPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDEG 77
             LP G+RF P  +E++VQYL +K+ +  LP++II + D+   D P  LP G  +     E 
Sbjct:    14 LPPGFRFHPTDEELVVQYLKRKVCSSPLPASIIPEFDVCRAD-PWDLP-GNLEK----ER 67

Query:    78 YFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWN--NSIVGFKKILVFYEGKPPTGT 134
             YFF+  E +   G +  R T SGYWK TG  ++++ +  N IVG KK LVFY+GKPP G+
Sbjct:    68 YFFSTREAKYPNGNRSNRATGSGYWKATGIDKRVVTSRGNQIVGLKKTLVFYKGKPPHGS 127

Query:   135 RSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKKESGNKRSEA-GKKKNL 190
             R+ W+MHE+R++ S  S+      TQ    N+V C+I  KK +GNK  +  G  +NL
Sbjct:   128 RTDWIMHEYRLSSSPPSSMG---PTQ----NWVLCRIFLKKRAGNKNDDDDGDSRNL 177

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=RCA;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010150 "leaf senescence" evidence=IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2160324 NAC080 "NAC domain containing protein 80" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 71/182 (39%), Positives = 103/182 (56%)

Query:     1 MASQGVFGSINQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDH 60
             M + GVF     +E+ DLP G+RF P  +E+I  YL KK+L+    +  I ++DL   + 
Sbjct:     1 METFGVFHK-EDDEQMDLPPGFRFHPTDEELITHYLHKKVLDLGFSAKAIGEVDLNKAE- 58

Query:    61 PRQLPIGEFK-NCKPDEGYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNSIVG 118
             P +LP   +K      E YFF   + +   G +  R T++GYWK TGK ++I    S+VG
Sbjct:    59 PWELP---YKAKIGEKEWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDKEIFRGKSLVG 115

Query:   119 FKKILVFYEGKPPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKKESG 178
              KK LVFY G+ P G ++ WVMHE+R++   LSA  L  T + E   +V C++ HK   G
Sbjct:   116 MKKTLVFYRGRAPKGQKTNWVMHEYRLDGK-LSAHNLPKTAKNE---WVICRVFHKTAGG 171

Query:   179 NK 180
              K
Sbjct:   172 KK 173

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2051053 NAC041 "NAC domain containing protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 72/191 (37%), Positives = 109/191 (57%)

Query:     9 SINQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGE 68
             SI       LP G+RF P  +E++VQYL +K+    LP+++I + D+   D P  LP G+
Sbjct:     6 SIKNRGVLRLPPGFRFHPTDEELVVQYLRRKVTGLPLPASVIPETDVCKSD-PWDLP-GD 63

Query:    69 FKNCKPDEGYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYE 127
                C+  E YFF+  E +   G +  R+T SGYWK TG  +QI     +VG KK LVFY+
Sbjct:    64 ---CE-SEMYFFSTREAKYPNGNRSNRSTGSGYWKATGLDKQIGKKKLVVGMKKTLVFYK 119

Query:   128 GKPPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKKESG-NKRSEAGK 186
             GKPP GTR+ WV+HE+R+  S   +         + +N+V C++  KK S  N + +  +
Sbjct:   120 GKPPNGTRTNWVLHEYRLVDSQQDSL------YGQNMNWVLCRVFLKKRSNSNSKRKEDE 173

Query:   187 KKNLPVRKKTK 197
             K+ +   K+T+
Sbjct:   174 KEEVENEKETE 184

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2163153 NAC100 "NAC domain containing protein 100" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 66/174 (37%), Positives = 96/174 (55%)

Query:     8 GSINQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIG 67
             G   +EE+ DLP G+RF P  +E+I  YL KK+L+    +  I ++DL   + P +LP  
Sbjct:     6 GFQKEEEQMDLPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSE-PWELPW- 63

Query:    68 EFKNCKPDEGYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFY 126
                     E YFF   + +   G +  R T++GYWK TGK ++I    S+VG KK LVFY
Sbjct:    64 -MAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFY 122

Query:   127 EGKPPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKKESGNK 180
              G+ P G ++ WVMHE+R+   + SA  L  T + E   +V C++  K   G K
Sbjct:   123 RGRAPKGQKTNWVMHEYRLEGKF-SAHNLPKTAKNE---WVICRVFQKSAGGKK 172

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2008490 NAC025 "NAC domain containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 70/168 (41%), Positives = 97/168 (57%)

Query:    18 LPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDEG 77
             LP G+RF P  +E++V YL KK  +  LP +II +IDLY +D P +LP     +    E 
Sbjct:    16 LPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFD-PWELP--SKASFGEHEW 72

Query:    78 YFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNSI-VGFKKILVFYEGKPPTGTR 135
             YFF+  + +   G +P R   SGYWK TG  + I   NS  VG KK LVFY GKPP G +
Sbjct:    73 YFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHKVGVKKALVFYGGKPPKGIK 132

Query:   136 SRWVMHEFRVNPSYLSAFAL--DITTQTE----VVNYVACKIHHKKES 177
             + W+MHE+R+    LS  A   D+TT  +    + ++V C+I+ K  S
Sbjct:   133 TDWIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDDWVLCRIYKKNSS 180

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2087037 NAC3 "NAC domain containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 65/179 (36%), Positives = 97/179 (54%)

Query:     6 VFGSINQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYA---YDHPR 62
             V G +   E+ DLP G+RF P  +E+I  YL  K++N    +  I ++DL     +D P 
Sbjct:    12 VEGEVEDSEKIDLPPGFRFHPTDEELITHYLRPKVVNSFFSAIAIGEVDLNKVEPWDLPW 71

Query:    63 QLPIGEFKNCKPDEGYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNSIVGFKK 121
             +  +GE       E YFF   + +   G +  R TK+GYWK TGK ++I    S+VG KK
Sbjct:    72 KAKLGE------KEWYFFCVRDRKYPTGLRTNRATKAGYWKATGKDKEIFKGKSLVGMKK 125

Query:   122 ILVFYEGKPPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKKESGNK 180
              LVFY+G+ P G ++ WVMHE+R+       FA+D  ++T     V  ++ H +  G K
Sbjct:   126 TLVFYKGRAPKGVKTNWVMHEYRLE----GKFAIDNLSKTAKNECVISRVFHTRTDGTK 180

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010150 "leaf senescence" evidence=IMP

TAIR|locus:2164895 NAC6 "NAC domain containing protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 63/172 (36%), Positives = 92/172 (53%)

Query:    10 INQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEF 69
             +  EE  DLP G+RF P  +E+I  YL  K+ N    +  I ++DL   + P  LP    
Sbjct:    12 VEDEEHIDLPPGFRFHPTDEELITHYLKPKVFNTFFSATAIGEVDLNKIE-PWDLPWKAK 70

Query:    70 KNCKPDEGYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEG 128
                K  E YFF   + +   G +  R T++GYWK TGK ++I    S+VG KK LVFY+G
Sbjct:    71 MGEK--EWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKSLVGMKKTLVFYKG 128

Query:   129 KPPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKKESGNK 180
             + P G ++ WVMHE+R+   Y     ++   QT    +V C++  K+  G K
Sbjct:   129 RAPKGVKTNWVMHEYRLEGKY----CIENLPQTAKNEWVICRVFQKRADGTK 176

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IPI

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010150 "leaf senescence" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0000303 "response to superoxide" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2172334 ANAC087 "Arabidopsis NAC domain containing protein 87" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 72/202 (35%), Positives = 107/202 (52%)

Query:     1 MASQGVFGSINQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYA--- 57
             +  +GV  +   EE  DLP G+RF P  +EII  YL +K+LN R  +  + + DL     
Sbjct:     4 VVEEGVVLNHGGEELVDLPPGFRFHPTDEEIITCYLKEKVLNSRFTAVAMGEADLNKCEP 63

Query:    58 YDHPRQLPIGEFKNCKPDEGYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNS- 115
             +D P++  +GE       E YFF Q + +   G +  R T+SGYWK TGK ++I      
Sbjct:    64 WDLPKRAKMGE------KEFYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFKGKGC 117

Query:   116 IVGFKKILVFYEGKPPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKK 175
             +VG KK LVFY G+ P G ++ WVMHE+R+   Y S + L  + + E   +V C++ HK 
Sbjct:   118 LVGMKKTLVFYRGRAPKGEKTNWVMHEYRLEGKY-SYYNLPKSARDE---WVVCRVFHKN 173

Query:   176 ESGNKRSEAGKKKNLPVRKKTK 197
                N  +       +PV   T+
Sbjct:   174 ---NPSTTTQPMTRIPVEDFTR 192

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2007166 NAP "NAC-like, activated by AP3/PI" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 63/164 (38%), Positives = 99/164 (60%)

Query:    18 LPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDEG 77
             LP G+RF P  +E+IV YL  + +++  P +II ++D+Y +D P QLP  E      +E 
Sbjct:     9 LPPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFD-PWQLP--EKTEFGENEW 65

Query:    78 YFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGKPPTGTRS 136
             YFF+  E +   G +P R   SGYWK TG  + I   +S VG KK LVFY+G+PP G ++
Sbjct:    66 YFFSPRERKYPNGVRPNRAAVSGYWKATGTDKAIHSGSSNVGVKKALVFYKGRPPKGIKT 125

Query:   137 RWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKKESGNK 180
              W+MHE+R++ S  ++   + + + +   +V C+I+ KK   +K
Sbjct:   126 DWIMHEYRLHDSRKASTKRNGSMRLD--EWVLCRIY-KKRGASK 166

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010150 "leaf senescence" evidence=IMP

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=IMP

GO:0009908 "flower development" evidence=IMP

TAIR|locus:2011516 NAM "NO APICAL MERISTEM" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 64/173 (36%), Positives = 96/173 (55%)

Query:    17 DLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDE 76
             +LP G+RF P  +E+++ YL +K  +  LP  II D+DLY +D P +LP     +    E
Sbjct:    16 NLPPGFRFHPTDEELVIHYLKRKADSVPLPVAIIADVDLYKFD-PWELPAKA--SFGEQE 72

Query:    77 GYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQII----WNNSIVGFKKILVFYEGKPP 131
              YFF+  + +   G +P R   SGYWK TG  + +I      +  VG KK LVFY GKPP
Sbjct:    73 WYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVISTGGGGSKKVGVKKALVFYSGKPP 132

Query:   132 TGTRSRWVMHEFRVN---PSYLSAFALDITTQTEVVNYVACKIHHKKESGNKR 181
              G +S W+MHE+R+    P+++  F  +      + ++V C+I+ K  S   R
Sbjct:   133 KGVKSDWIMHEYRLTDNKPTHICDFG-NKKNSLRLDDWVLCRIYKKNNSTASR 184

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032772001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (373 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	199
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	2e-45

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  146 bits (371), Expect = 2e-45
 Identities = 54/130 (41%), Positives = 81/130 (62%), Gaps = 5/130 (3%)

Query: 18  LPLGYRFSPNGQEIIVQYLTKKILNQRLP-SNIIKDIDLYAYDHPRQLPIGEFKNCKPDE 76
           LP G+RF P  +E++V YL +K+L + LP  ++I ++D+Y +  P  LP G+ K     E
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKF-EPWDLPDGKAKG-GDRE 58

Query: 77  GYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQII-WNNSIVGFKKILVFYEGKPPTGT 134
            YFF+  + +   G +  R T SGYWK TGK + ++     +VG KK LVFY+G+ P G 
Sbjct: 59  WYFFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVFYKGRAPKGE 118

Query: 135 RSRWVMHEFR 144
           ++ WVMHE+R
Sbjct: 119 KTDWVMHEYR 128

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=5.6e-45  Score=278.94  Aligned_cols=125  Identities=45%  Similarity=0.910  Sum_probs=96.7

Q ss_pred             CCCcceECCChHHHHHHHHHHHHhCCCCCC-CceeecccCCCCCCCCCCcccccCCCCCeEEEEeeecC--CCCCCCCcc
Q 038703           18 LPLGYRFSPNGQEIIVQYLTKKILNQRLPS-NIIKDIDLYAYDHPRQLPIGEFKNCKPDEGYFFTQLEN--RDGKGQPKR   94 (199)
Q Consensus        18 lppG~rF~PTDeELv~~YL~~ki~g~~l~~-~~I~~~Dvy~~~~P~~Lp~~~~~~~~~~~wyFF~~~~~--~~g~~r~~R   94 (199)
                      |||||||+|||+|||.+||++|+.|.+++. .+|+++|||+++ ||+|+  .....++++||||+++++  .+| .|.+|
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~-P~~L~--~~~~~~~~~~yFF~~~~~~~~~~-~r~~R   76 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAH-PWELP--AKFKGGDEEWYFFSPRKKKYPNG-GRPNR   76 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS--GGGCH--HHSSS-SSEEEEEEE-----------S-E
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccC-hHHhh--hhccCCCceEEEEEecccccCCc-ccccc
Confidence            899999999999999999999999999887 799999999999 99999  233335689999999987  566 88999


Q ss_pred             cCCCceeeecCCceEEee-CCeEEEEEEEEEeeeCCCCCCCccCeEEEEEEeC
Q 038703           95 TTKSGYWKDTGKVEQIIW-NNSIVGFKKILVFYEGKPPTGTRSRWVMHEFRVN  146 (199)
Q Consensus        95 ~~~~G~Wk~~g~~k~I~~-~g~~iG~kk~l~fy~~~~~~g~kT~W~M~EY~l~  146 (199)
                      ++++|+||.+|+.++|.. ++.+||+|++|+||.++.+.+.+|+|+||||+|.
T Consensus        77 ~~~~G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   77 VTGGGYWKSTGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             EETTEEEEEECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             cccceEEeecccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            999999999999999996 9999999999999998888889999999999983

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	199
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		8e-25
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		3e-23
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		3e-23

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  109 bits (273), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 91/171 (53%), Gaps = 5/171 (2%)
Query: 11  NQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFK 70
           + E E +LP G+RF P   E++  YL +K   QRLP  II ++DLY +D P  LP     
Sbjct: 8   DAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFD-PWDLPERALF 66
Query: 71  NCKPDEGYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGK 129
             +  E YFFT  + +   G +P R   +GYWK TG  + +      +G KK LVFY GK
Sbjct: 67  GAR--EWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGK 124
Query: 130 PPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKKESGNK 180
            P G ++ W+MHE+R+      A A        + ++V C++++KK    K
Sbjct: 125 APRGVKTDWIMHEYRLA-DAGRAAAGAKKGSLRLDDWVLCRLYNKKNEWEK 174

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 91/168 (54%), Gaps = 12/168 (7%)
Query: 15  EFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKP 74
           +  LP G+RF P  +E++VQYL +K         +I +IDLY +D P  LP       K 
Sbjct: 17  QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFD-PWVLPNKALFGEK- 74
Query: 75  DEGYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGKPPTG 133
            E YFF+  + +   G +P R   SGYWK TG  + I      VG KK LVFY GK P G
Sbjct: 75  -EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG 133
Query: 134 TRSRWVMHEFR-VNPSYLSAFALDITTQTEVVNYVACKIHHKKESGNK 180
           T++ W+MHE+R + PS  +         T++ ++V C+I+ K+ S  K
Sbjct: 134 TKTNWIMHEYRLIEPSRRNG-------STKLDDWVLCRIYKKQSSAQK 174

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 91/168 (54%), Gaps = 12/168 (7%)
Query: 15  EFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKP 74
           +  LP G+RF P  +E++VQYL +K         +I +IDLY +D P  LP       K 
Sbjct: 14  QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFD-PWVLPNKALFGEK- 71
Query: 75  DEGYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGKPPTG 133
            E YFF+  + +   G +P R   SGYWK TG  + I      VG KK LVFY GK P G
Sbjct: 72  -EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG 130
Query: 134 TRSRWVMHEFR-VNPSYLSAFALDITTQTEVVNYVACKIHHKKESGNK 180
           T++ W+MHE+R + PS  +         T++ ++V C+I+ K+ S  K
Sbjct: 131 TKTNWIMHEYRLIEPSRRNG-------STKLDDWVLCRIYKKQSSAQK 171

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	199
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	5e-54
1ut7_A	171	No apical meristem protein; transcription regulati	6e-52

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  169 bits (429), Expect = 5e-54
 Identities = 65/180 (36%), Positives = 94/180 (52%), Gaps = 11/180 (6%)

Query: 5   GVFGSINQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQL 64
           G+    + E E +LP G+RF P   E++  YL +K   QRLP  II ++DLY +D P  L
Sbjct: 2   GMRRERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFD-PWDL 60

Query: 65  PIGEFKNCKPDEGYFFTQLENRDGK----GQPKRTTKSGYWKDTGKVEQIIWNNSIVGFK 120
           P  E       E YFFT    RD K     +P R   +GYWK TG  + +      +G K
Sbjct: 61  P--ERALFGAREWYFFTP---RDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIK 115

Query: 121 KILVFYEGKPPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKKESGNK 180
           K LVFY GK P G ++ W+MHE+R+  +  +A      +     ++V C++++KK    K
Sbjct: 116 KALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRL-DDWVLCRLYNKKNEWEK 174

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  163 bits (415), Expect = 6e-52
 Identities = 63/177 (35%), Positives = 88/177 (49%), Gaps = 16/177 (9%)

Query: 8   GSINQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIG 67
              +   +  LP G+RF P  +E++VQYL +K         +I +IDLY +D P  LP  
Sbjct: 7   QETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFD-PWVLP-- 63

Query: 68  EFKNCKPDEGYFFTQLENRDGK----GQPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKIL 123
                   E YFF+    RD K     +P R   SGYWK TG  + I      VG KK L
Sbjct: 64  NKALFGEKEWYFFSP---RDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKAL 120

Query: 124 VFYEGKPPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKKESGNK 180
           VFY GK P GT++ W+MHE+R+               T++ ++V C+I+ K+ S  K
Sbjct: 121 VFYIGKAPKGTKTNWIMHEYRLIEPSRRN------GSTKLDDWVLCRIYKKQSSAQK 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	199
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=2.8e-57  Score=361.33  Aligned_cols=160  Identities=38%  Similarity=0.740  Sum_probs=135.3

Q ss_pred             CCCCCCCCCcceECCChHHHHHHHHHHHHhCCCCCCCceeecccCCCCCCCCCCcccccCCCCCeEEEEeeecC--CCCC
Q 038703           12 QEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDEGYFFTQLEN--RDGK   89 (199)
Q Consensus        12 ~~~~~~lppG~rF~PTDeELv~~YL~~ki~g~~l~~~~I~~~Dvy~~~~P~~Lp~~~~~~~~~~~wyFF~~~~~--~~g~   89 (199)
                      .++++.|||||||+|||||||.|||++|+.|.+++.++|+++|||.++ ||+||.  ....++.+||||+++.+  ++| 
T Consensus         9 ~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~-Pw~Lp~--~~~~g~~ewYFFs~r~~ky~~g-   84 (174)
T 3ulx_A            9 AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFD-PWDLPE--RALFGAREWYFFTPRDRKYPNG-   84 (174)
T ss_dssp             CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSC-GGGSGG--GCSSCSSEEEEEEECCC------
T ss_pred             cccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCC-chhhhh--hhccCCceEEEEeccccccCCC-
Confidence            466889999999999999999999999999999999999999999999 999994  33445789999999987  788 


Q ss_pred             CCCcccCCCceeeecCCceEEeeCCeEEEEEEEEEeeeCCCCCCCccCeEEEEEEeCCCCcccccccccCCcccccEEEE
Q 038703           90 GQPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGKPPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVAC  169 (199)
Q Consensus        90 ~r~~R~~~~G~Wk~~g~~k~I~~~g~~iG~kk~l~fy~~~~~~g~kT~W~M~EY~l~~~~~~~~~~~~~~~~~~~~~VLC  169 (199)
                      .|++|+|++||||++|++++|..+|.+||+|++|+||.+++|++.+|+|+||||+|.+....... ........++||||
T Consensus        85 ~R~nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~-~~~~~~~~~~wVlC  163 (174)
T 3ulx_A           85 SRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAG-AKKGSLRLDDWVLC  163 (174)
T ss_dssp             CCSCEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC------------CCSSEEEE
T ss_pred             CCceeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccc-cccCCCCCCCEEEE
Confidence            89999999999999999999997789999999999999999999999999999999997632110 00123457899999


Q ss_pred             EEEEcCC
Q 038703          170 KIHHKKE  176 (199)
Q Consensus       170 rI~~k~~  176 (199)
                      |||+|+.
T Consensus       164 rvf~K~~  170 (174)
T 3ulx_A          164 RLYNKKN  170 (174)
T ss_dssp             EEEESCC
T ss_pred             EEEEcCC
Confidence            9998764

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=1.8e-56  Score=356.20  Aligned_cols=156  Identities=38%  Similarity=0.719  Sum_probs=131.3

Q ss_pred             CCCCCCCCcceECCChHHHHHHHHHHHHhCCCCCCCceeecccCCCCCCCCCCcccccCCCCCeEEEEeeecC--CCCCC
Q 038703           13 EEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDEGYFFTQLEN--RDGKG   90 (199)
Q Consensus        13 ~~~~~lppG~rF~PTDeELv~~YL~~ki~g~~l~~~~I~~~Dvy~~~~P~~Lp~~~~~~~~~~~wyFF~~~~~--~~g~~   90 (199)
                      ..++.|||||||+|||||||.|||++|+.|.+++.++|+++|||.+| ||+||.  ....++.+||||+++.+  ++| .
T Consensus        12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~-Pw~Lp~--~~~~g~~ewyFFs~r~~k~~~g-~   87 (171)
T 1ut7_A           12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFD-PWVLPN--KALFGEKEWYFFSPRDRKYPNG-S   87 (171)
T ss_dssp             CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSC-GGGHHH--HSSSCSSEEEEEEECCC-------
T ss_pred             ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCC-hhHhhc--hhhcCCccEEEEeccccccCCC-C
Confidence            45789999999999999999999999999999999999999999999 999994  34456799999999987  788 8


Q ss_pred             CCcccCCCceeeecCCceEEeeCCeEEEEEEEEEeeeCCCCCCCccCeEEEEEEeCCCCcccccccccCCcccccEEEEE
Q 038703           91 QPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGKPPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACK  170 (199)
Q Consensus        91 r~~R~~~~G~Wk~~g~~k~I~~~g~~iG~kk~l~fy~~~~~~g~kT~W~M~EY~l~~~~~~~~~~~~~~~~~~~~~VLCr  170 (199)
                      |++|+|++||||++|++++|..++.+||+|++|+||.+++|.+.+|+|+||||+|......      ......++|||||
T Consensus        88 R~~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~------~~~~~~~~~VlCr  161 (171)
T 1ut7_A           88 RPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR------NGSTKLDDWVLCR  161 (171)
T ss_dssp             -CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------------CCEEEEE
T ss_pred             cccccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccc------cCcccCCCEEEEE
Confidence            9999999999999999999998889999999999999999999999999999999987511      1234578999999


Q ss_pred             EEEcCCCC
Q 038703          171 IHHKKESG  178 (199)
Q Consensus       171 I~~k~~~~  178 (199)
                      ||+|+...
T Consensus       162 v~~k~~~~  169 (171)
T 1ut7_A          162 IYKKQSSA  169 (171)
T ss_dssp             EEECC---
T ss_pred             EEEcCCCC
Confidence            99988653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	199
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	2e-42

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  138 bits (348), Expect = 2e-42
 Identities = 59/166 (35%), Positives = 86/166 (51%), Gaps = 10/166 (6%)

Query: 11  NQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFK 70
           +   +  LP G+RF P  +E++VQYL +K         +I +IDLY +D P  LP     
Sbjct: 10  DPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFD-PWVLP--NKA 66

Query: 71  NCKPDEGYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGK 129
                E YFF+  + +   G +P R   SGYWK TG  + I      VG KK LVFY GK
Sbjct: 67  LFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGK 126

Query: 130 PPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKK 175
            P GT++ W+MHE+R+               T++ ++V C+I+ K+
Sbjct: 127 APKGTKTNWIMHEYRLIEPSRRN------GSTKLDDWVLCRIYKKQ 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	199
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.3e-55  Score=347.23  Aligned_cols=155  Identities=38%  Similarity=0.720  Sum_probs=130.4

Q ss_pred             CCCCCCCCCCcceECCChHHHHHHHHHHHHhCCCCCCCceeecccCCCCCCCCCCcccccCCCCCeEEEEeeecC--CCC
Q 038703           11 NQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDEGYFFTQLEN--RDG   88 (199)
Q Consensus        11 ~~~~~~~lppG~rF~PTDeELv~~YL~~ki~g~~l~~~~I~~~Dvy~~~~P~~Lp~~~~~~~~~~~wyFF~~~~~--~~g   88 (199)
                      ....+++|||||||+|||||||.|||++|+.|.|++.++|+++|||.++ ||+||.  ....++++||||+++++  ++|
T Consensus        10 ~~~~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~-Pw~Lp~--~~~~~~~~wyFft~~~~k~~~g   86 (166)
T d1ut7a_          10 DPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFD-PWVLPN--KALFGEKEWYFFSPRDRKYPNG   86 (166)
T ss_dssp             --CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSC-GGGHHH--HSSSCSSEEEEEEECCC-----
T ss_pred             CccccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCC-hhhccc--hhccCcceEEEEeeeccccCCC
Confidence            3456889999999999999999999999999999999999999999999 999993  33445789999999987  777


Q ss_pred             CCCCcccCCCceeeecCCceEEeeCCeEEEEEEEEEeeeCCCCCCCccCeEEEEEEeCCCCcccccccccCCcccccEEE
Q 038703           89 KGQPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGKPPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVA  168 (199)
Q Consensus        89 ~~r~~R~~~~G~Wk~~g~~k~I~~~g~~iG~kk~l~fy~~~~~~g~kT~W~M~EY~l~~~~~~~~~~~~~~~~~~~~~VL  168 (199)
                       .|.+|++++|+||++|++++|..+|.+||+|++|+||+++.+.+.+|+|+||||+|.+.....      .....++|||
T Consensus        87 -~r~~R~~g~G~Wk~~g~~~~i~~~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~------~~~~~~~~VL  159 (166)
T d1ut7a_          87 -SRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRN------GSTKLDDWVL  159 (166)
T ss_dssp             ---CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------------CCEEE
T ss_pred             -CccccccCCCEecccCCCceEecCCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCccccc------CccccCCEEE
Confidence             899999999999999999999988999999999999999999999999999999999876221      2345789999


Q ss_pred             EEEEEcC
Q 038703          169 CKIHHKK  175 (199)
Q Consensus       169 CrI~~k~  175 (199)
                      ||||+|+
T Consensus       160 CrI~~Kk  166 (166)
T d1ut7a_         160 CRIYKKQ  166 (166)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            9999874