Citrus Sinensis ID: 038741

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-----
MDAQAYKVADGGVDDDGRSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQPVFYVIESWTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPFFNEVLGLLGALAYWPLTVYFPLEMYIAQKNIKRGTSWWFGLQLLNLVCFLAALGAACSSIHGLYKALHTYKPLKVTQ
ccHHHHcccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHEEEEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHcccccccccccccEEEEEHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
MDAQAYKVadggvdddgrskrtgtVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLyssglladcyraplsgnrnhTYRAAVKTYlggrkhkicGLVQYVLLVGMVVGYTITAAISMLTIRksncfqkrghgaqckfsnnpfmIGIGIVEMFLsqipnihklSWLSIIAAIMSVSYAGIGMGLAFTKAVlghgettsltgeeigpnltaadktwgMFSAIGNIAFACAYLQILIEIQDtlkssppenkvmKKANVIATLTATTLYMLCGCfgyaalgnhapgnllagfykpfwlvdMANSFIVVHLLGAYQVMAQPVFYVIESwtstrwpkskfvtkeypvtigknnlKFSVNLFRLTWRTIFVVMATLLSMALPFFNEVLGLLGalaywpltvyfPLEMYIAQKNIKRGTSWWFGLQLLNLVCFLAALGAACSSIHGLYKALhtykplkvtq
mdaqaykvadggvdddgrsKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRaplsgnrnhtYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETtsltgeeigpNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQPVFYVIESwtstrwpkskfvtkeypvtigknnlkfsVNLFRLTWRTIFVVMATLLSMALPFFNEVLGLLGALAYWPLTVYFPLEMYIAQKNIKRGTSWWFGLQLLNLVCFLAALGAACSSIHGLYKALhtykplkvtq
MDAQAYKVADGGVDDDGRSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVstllifssislyssgllADCYRAPLSGNRNHTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQPVFYVIESWTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPFFNEVLGLLGALAYWPLTVYFPLEMYIAQKNIKRGTSWWFGLQLLNLVCFLAALGAACSSIHGLYKALHTYKPLKVTQ
**********************GTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTL********VMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQPVFYVIESWTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPFFNEVLGLLGALAYWPLTVYFPLEMYIAQKNIKRGTSWWFGLQLLNLVCFLAALGAACSSIHGLYKALHTYKP*****
***********************TVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQPVFYVIESWTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPFFNEVLGLLGALAYWPLTVYFPLEMYIAQKNIKRGTSWWFGLQLLNLVCFLAALGAACSSIHGLYKALHTYKPLK***
*********DGGVDDDGRSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQPVFYVIESWTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPFFNEVLGLLGALAYWPLTVYFPLEMYIAQKNIKRGTSWWFGLQLLNLVCFLAALGAACSSIHGLYKALHTYKPLKVTQ
******************SKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQPVFYVIESWTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPFFNEVLGLLGALAYWPLTVYFPLEMYIAQKNIKRGTSWWFGLQLLNLVCFLAALGAACSSIHGLYKALHTYKPL****
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MDAQAYKVADGGVDDDGRSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQPVFYVIESWTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPFFNEVLGLLGALAYWPLTVYFPLEMYIAQKNIKRGTSWWFGLQLLNLVCFLAALGAACSSIHGLYKALHTYKPLKVTQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query465 2.2.26 [Sep-21-2011]
O80592475 Amino acid permease 8 OS= yes no 0.965 0.945 0.563 1e-153
Q42400485 Amino acid permease 1 OS= no no 0.984 0.944 0.552 1e-151
P92934481 Amino acid permease 6 OS= no no 0.961 0.929 0.548 1e-144
Q38967493 Amino acid permease 2 OS= no no 0.967 0.912 0.527 1e-140
Q9FN04466 Amino acid permease 4 OS= no no 0.967 0.965 0.536 1e-140
Q8GUM3480 Amino acid permease 5 OS= no no 0.974 0.943 0.513 1e-137
Q39134476 Amino acid permease 3 OS= no no 0.961 0.939 0.523 1e-135
Q9FF99467 Probable amino acid perme no no 0.929 0.925 0.458 1e-103
Q9LRB5441 Lysine histidine transpor no no 0.853 0.900 0.296 2e-38
Q9FKS8446 Lysine histidine transpor no no 0.821 0.856 0.289 7e-38
>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1 Back     alignment and function desciption
 Score =  541 bits (1393), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 256/454 (56%), Positives = 333/454 (73%), Gaps = 5/454 (1%)

Query: 13  VDDDGRSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSG 72
           VDDDGR KRTGT WTASAHI+TA++GSGVLSLAW IAQLGW+ G + L+ F+ I+ Y+S 
Sbjct: 20  VDDDGREKRTGTFWTASAHIITAVIGSGVLSLAWAIAQLGWVAGTTVLVAFAIITYYTST 79

Query: 73  LLADCYRAP--LSGNRNHTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISML 130
           LLADCYR+P  ++G RN+ Y   V++YLGG+K ++CG+ QYV LVG+ +GYTITA+IS++
Sbjct: 80  LLADCYRSPDSITGTRNYNYMGVVRSYLGGKKVQLCGVAQYVNLVGVTIGYTITASISLV 139

Query: 131 TIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLSIIAAIMSVSYAG 190
            I KSNC+  +GH A+C  SN P+M   GIV++ LSQ+PN HKLS+LSIIAA+MS SYA 
Sbjct: 140 AIGKSNCYHDKGHKAKCSVSNYPYMAAFGIVQIILSQLPNFHKLSFLSIIAAVMSFSYAS 199

Query: 191 IGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQD 250
           IG+GLA      G    T LTG  IG ++TA++K W +F AIG+IAF+ A+  ILIEIQD
Sbjct: 200 IGIGLAIATVASGKIGKTELTGTVIGVDVTASEKVWKLFQAIGDIAFSYAFTTILIEIQD 259

Query: 251 TLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLA--GFYKPFWLVD 308
           TL+SSPPENKVMK+A+++   T T  Y+LCGC GYAA GN APG+ L   GFY+P+WL+D
Sbjct: 260 TLRSSPPENKVMKRASLVGVSTTTVFYILCGCIGYAAFGNQAPGDFLTDFGFYEPYWLID 319

Query: 309 MANSFIVVHLLGAYQVMAQPVFYVIESWTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFR 368
            AN+ I +HL+GAYQV AQP F  +E   + +WP+S F+ KEY   +     K  VNLFR
Sbjct: 320 FANACIALHLIGAYQVYAQPFFQFVEENCNKKWPQSNFINKEYSSKVPLLG-KCRVNLFR 378

Query: 369 LTWRTIFVVMATLLSMALPFFNEVLGLLGALAYWPLTVYFPLEMYIAQKNIKRGTSWWFG 428
           L WRT +VV+ T ++M  PFFN +LGLLGA A+WPLTVYFP+ M+IAQ  +K+ +  W  
Sbjct: 379 LVWRTCYVVLTTFVAMIFPFFNAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWLA 438

Query: 429 LQLLNLVCFLAALGAACSSIHGLYKALHTYKPLK 462
           L LL LVC + +  AA  SI GL  ++ +YKP K
Sbjct: 439 LNLLVLVCLIVSALAAVGSIIGLINSVKSYKPFK 472
Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate, aspartate and neutral and acidic amino acids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1 Back     alignment and function description
>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1 Back     alignment and function description
>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1 Back     alignment and function description
>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1 Back     alignment and function description
>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2 Back     alignment and function description
>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1 Back     alignment and function description
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query465
224092254504 amino acid permease [Populus trichocarpa 0.978 0.902 0.644 1e-177
255550966486 amino acid transporter, putative [Ricinu 0.980 0.938 0.624 1e-176
225429371478 PREDICTED: amino acid permease 1-like [V 0.980 0.953 0.606 1e-166
255550968420 amino acid transporter, putative [Ricinu 0.892 0.988 0.658 1e-165
296081570 590 unnamed protein product [Vitis vinifera] 0.974 0.767 0.610 1e-165
225429367483 PREDICTED: amino acid permease 8 [Vitis 0.987 0.950 0.623 1e-165
296081568475 unnamed protein product [Vitis vinifera] 0.987 0.966 0.623 1e-165
225429369476 PREDICTED: amino acid permease 8-like [V 0.976 0.953 0.605 1e-162
296081569490 unnamed protein product [Vitis vinifera] 0.976 0.926 0.603 1e-162
225429375479 PREDICTED: amino acid permease 1 [Vitis 0.976 0.947 0.592 1e-162
>gi|224092254|ref|XP_002309530.1| amino acid permease [Populus trichocarpa] gi|222855506|gb|EEE93053.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 296/459 (64%), Positives = 361/459 (78%), Gaps = 4/459 (0%)

Query: 11  GGVDDDGRSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYS 70
           G VDDDG+ +RTG VWTASAHI+TAI+GSGVLSLAWG+AQLGWI G+  LL FS I+ Y+
Sbjct: 46  GEVDDDGKPRRTGIVWTASAHIITAIIGSGVLSLAWGMAQLGWIAGIGILLTFSVITYYT 105

Query: 71  SGLLADCYRAP--LSGNRNHTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAIS 128
           S LLADCYR P   SG RN+TY AAV  YLG    K+CGL Q+++L G  +GYTITA++S
Sbjct: 106 SSLLADCYRFPKSASGKRNYTYMAAVNAYLGENMRKVCGLFQFLILSGATIGYTITASVS 165

Query: 129 MLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLSIIAAIMSVSY 188
           ++ IRKSNCF KRGHGA CKFSNN +MIG+GI E+ +SQIPN HKLSWLSI+AAIMS +Y
Sbjct: 166 LVAIRKSNCFHKRGHGAPCKFSNNQYMIGLGITEILVSQIPNFHKLSWLSIVAAIMSFAY 225

Query: 189 AGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEI 248
           + IG+GLAFTK + GHG  T+LTG E+G ++TAA+K W +F AIG++AFACAY  ILIEI
Sbjct: 226 SSIGLGLAFTKVISGHGHRTTLTGVEVGVDVTAAEKIWTIFRAIGDMAFACAYSVILIEI 285

Query: 249 QDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLA--GFYKPFWL 306
           QDTL+SSPPENK MKKAN+IA LT+TT Y++CGCFGYAA GN APGN+L   GFY+PFWL
Sbjct: 286 QDTLRSSPPENKAMKKANMIAILTSTTFYLMCGCFGYAAFGNKAPGNMLTGFGFYEPFWL 345

Query: 307 VDMANSFIVVHLLGAYQVMAQPVFYVIESWTSTRWPKSKFVTKEYPVTIGKNNLKFSVNL 366
           +D+AN  IVVHL+GAYQV+AQP+F   ESW S RWP S+FV  EYP+ IG     FS+N 
Sbjct: 346 IDLANVCIVVHLVGAYQVLAQPIFSTFESWASMRWPNSEFVNTEYPLRIGSKKFNFSINF 405

Query: 367 FRLTWRTIFVVMATLLSMALPFFNEVLGLLGALAYWPLTVYFPLEMYIAQKNIKRGTSWW 426
            RLT RT FVV+ATLL+MALPFFNE+L LLGA++Y P+TVYFP+EM+IAQ  IKR +   
Sbjct: 406 LRLTGRTTFVVVATLLAMALPFFNEILALLGAISYGPMTVYFPVEMHIAQNKIKRLSIRG 465

Query: 427 FGLQLLNLVCFLAALGAACSSIHGLYKALHTYKPLKVTQ 465
             LQLLNLVCFL ++ AA  +I G+   L   KP +  +
Sbjct: 466 LALQLLNLVCFLVSIAAASGAIQGMGHGLRASKPFQYKE 504

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255550966|ref|XP_002516531.1| amino acid transporter, putative [Ricinus communis] gi|223544351|gb|EEF45872.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225429371|ref|XP_002277865.1| PREDICTED: amino acid permease 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255550968|ref|XP_002516532.1| amino acid transporter, putative [Ricinus communis] gi|223544352|gb|EEF45873.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296081570|emb|CBI20575.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225429367|ref|XP_002277817.1| PREDICTED: amino acid permease 8 [Vitis vinifera] gi|147818918|emb|CAN69377.1| hypothetical protein VITISV_008203 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081568|emb|CBI20573.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225429369|ref|XP_002277844.1| PREDICTED: amino acid permease 8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081569|emb|CBI20574.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225429375|ref|XP_002277980.1| PREDICTED: amino acid permease 1 [Vitis vinifera] gi|296081573|emb|CBI20578.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query465
TAIR|locus:2201871475 AAP8 "amino acid permease 8" [ 0.965 0.945 0.548 1.5e-136
TAIR|locus:2016600485 AAP1 "amino acid permease 1" [ 0.982 0.942 0.534 3.3e-134
TAIR|locus:2168912481 AAP6 "amino acid permease 6" [ 0.961 0.929 0.535 1.8e-133
TAIR|locus:2031402476 AAP3 "amino acid permease 3" [ 0.961 0.939 0.509 3e-124
TAIR|locus:2163981466 AAP4 "amino acid permease 4" [ 0.967 0.965 0.518 4.9e-124
TAIR|locus:2184707493 AAP2 "amino acid permease 2" [ 0.967 0.912 0.507 2.1e-123
TAIR|locus:2205876480 AAP5 "amino acid permease 5" [ 0.978 0.947 0.496 2.4e-122
TAIR|locus:2172868467 AAP7 "amino acid permease 7" [ 0.929 0.925 0.445 4.9e-101
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.643 0.678 0.328 8e-37
TAIR|locus:2031215440 AT1G25530 [Arabidopsis thalian 0.632 0.668 0.284 1.7e-35
TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1337 (475.7 bits), Expect = 1.5e-136, P = 1.5e-136
 Identities = 249/454 (54%), Positives = 321/454 (70%)

Query:    13 VDDDGRSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVXXXXXXXXXXXXXXX 72
             VDDDGR KRTGT WTASAHI+TA++GSGVLSLAW IAQLGW+ G                
Sbjct:    20 VDDDGREKRTGTFWTASAHIITAVIGSGVLSLAWAIAQLGWVAGTTVLVAFAIITYYTST 79

Query:    73 XXADCYRAP--LSGNRNHTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISML 130
               ADCYR+P  ++G RN+ Y   V++YLGG+K ++CG+ QYV LVG+ +GYTITA+IS++
Sbjct:    80 LLADCYRSPDSITGTRNYNYMGVVRSYLGGKKVQLCGVAQYVNLVGVTIGYTITASISLV 139

Query:   131 TIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLSIIAAIMSVSYAG 190
              I KSNC+  +GH A+C  SN P+M   GIV++ LSQ+PN HKLS+LSIIAA+MS SYA 
Sbjct:   140 AIGKSNCYHDKGHKAKCSVSNYPYMAAFGIVQIILSQLPNFHKLSFLSIIAAVMSFSYAS 199

Query:   191 IGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQD 250
             IG+GLA      G    T LTG  IG ++TA++K W +F AIG+IAF+ A+  ILIEIQD
Sbjct:   200 IGIGLAIATVASGKIGKTELTGTVIGVDVTASEKVWKLFQAIGDIAFSYAFTTILIEIQD 259

Query:   251 TLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLA--GFYKPFWLVD 308
             TL+SSPPENKVMK+A+++   T T  Y+LCGC GYAA GN APG+ L   GFY+P+WL+D
Sbjct:   260 TLRSSPPENKVMKRASLVGVSTTTVFYILCGCIGYAAFGNQAPGDFLTDFGFYEPYWLID 319

Query:   309 MANSFIVVHLLGAYQVMAQPVFYVIESWTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFR 368
              AN+ I +HL+GAYQV AQP F  +E   + +WP+S F+ KEY   +     K  VNLFR
Sbjct:   320 FANACIALHLIGAYQVYAQPFFQFVEENCNKKWPQSNFINKEYSSKVPLLG-KCRVNLFR 378

Query:   369 LTWRTIFVVMATLLSMALPFFNEVLGLLGALAYWPLTVYFPLEMYIAQKNIKRGTSWWFG 428
             L WRT +VV+ T ++M  PFFN +LGLLGA A+WPLTVYFP+ M+IAQ  +K+ +  W  
Sbjct:   379 LVWRTCYVVLTTFVAMIFPFFNAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWLA 438

Query:   429 LQLLNLVCFLAALGAACSSIHGLYKALHTYKPLK 462
             L LL LVC + +  AA  SI GL  ++ +YKP K
Sbjct:   439 LNLLVLVCLIVSALAAVGSIIGLINSVKSYKPFK 472
GO:0005886 "plasma membrane" evidence=ISM
GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS
GO:0006865 "amino acid transport" evidence=IGI
GO:0016020 "membrane" evidence=ISS
TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O80592AAP8_ARATHNo assigned EC number0.56380.96550.9452yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_VI1616
amino acid permease (504 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query465
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 2e-92
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 3e-11
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  285 bits (732), Expect = 2e-92
 Identities = 133/436 (30%), Positives = 206/436 (47%), Gaps = 35/436 (8%)

Query: 21  RTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYR- 79
            T + W A  +++ AI+G+GVLSL +   QLGWI G+  L+I   ISLY+  LL  C + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 80  -APLSGNRNHTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCF 138
              + G R  +Y        G +   +      V L G+ + Y I A  ++  I  S   
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFD 120

Query: 139 QKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLSIIAAIMSVSYAGIGMGLAFT 198
                   C  S   F+I  G++ + LS IPN+  LS LS++AA+ S         L   
Sbjct: 121 T-------CHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSS---------LYIV 164

Query: 199 KAVLGHGETTSLTGEEIGPNLTAAD-KTWGMFSAIGNIAFACAYLQILIEIQDTLKSSPP 257
             VL   E   LT + +G      + K   +F AIG I FA     +L+ IQ+T+KS P 
Sbjct: 165 ILVLSVAELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKS-PS 223

Query: 258 ENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWLVDMANSFIVVH 317
           + K M K  + A +  T LY+L G  GY A GN+  GN+L    K  WL+D+AN  +V+H
Sbjct: 224 KFKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLH 283

Query: 318 LLGAYQVMAQPVFYVIESWTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVV 377
           LL +Y + A P+  ++E+    +    K   K                L R+  R+  VV
Sbjct: 284 LLLSYPLQAFPIRQIVENLLFRKGASGKHNPK--------------SKLLRVVIRSGLVV 329

Query: 378 MATLLSMALPFFNEVLGLLGALAYWPLTVYFPLEMYIAQKNIKR-GTSWWFGLQLLNLVC 436
           +  L+++++PF  + L L+GA +  PLT   P   ++  K  K+      +   +L+++C
Sbjct: 330 ITYLIAISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVIC 389

Query: 437 FLAALGAACSSIHGLY 452
            +  L      + GL 
Sbjct: 390 IVIGLLLMAYGVAGLI 405

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 465
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
PLN03074473 auxin influx permease; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PRK10483414 tryptophan permease; Provisional 99.93
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.93
PRK09664415 tryptophan permease TnaB; Provisional 99.92
PRK15132403 tyrosine transporter TyrP; Provisional 99.92
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.91
PRK13629443 threonine/serine transporter TdcC; Provisional 99.88
TIGR00814397 stp serine transporter. The HAAAP family includes 99.82
PRK10249458 phenylalanine transporter; Provisional 99.63
PRK10655438 potE putrescine transporter; Provisional 99.6
PRK10644445 arginine:agmatin antiporter; Provisional 99.56
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.56
PRK15049499 L-asparagine permease; Provisional 99.54
PRK10238456 aromatic amino acid transporter; Provisional 99.53
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.52
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.51
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.51
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.49
PRK10580457 proY putative proline-specific permease; Provision 99.49
PRK10746461 putative transport protein YifK; Provisional 99.48
PRK11387471 S-methylmethionine transporter; Provisional 99.48
PRK11021410 putative transporter; Provisional 99.48
PRK10836489 lysine transporter; Provisional 99.47
TIGR00906557 2A0303 cationic amino acid transport permease. 99.45
TIGR00930 953 2a30 K-Cl cotransporter. 99.44
TIGR00909429 2A0306 amino acid transporter. 99.43
TIGR00913478 2A0310 amino acid permease (yeast). 99.43
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.37
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.35
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.35
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.35
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.34
TIGR00911501 2A0308 L-type amino acid transporter. 99.31
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.25
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.24
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.15
PRK15238496 inner membrane transporter YjeM; Provisional 99.12
COG0531466 PotE Amino acid transporters [Amino acid transport 99.11
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.08
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.05
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.0
COG0833541 LysP Amino acid transporters [Amino acid transport 98.96
PF03845320 Spore_permease: Spore germination protein; InterPr 98.94
KOG1286554 consensus Amino acid transporters [Amino acid tran 98.78
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 98.77
KOG3832319 consensus Predicted amino acid transporter [Genera 98.67
COG3949349 Uncharacterized membrane protein [Function unknown 98.58
PRK11375484 allantoin permease; Provisional 98.46
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.34
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.99
COG1457442 CodB Purine-cytosine permease and related proteins 97.92
KOG1289550 consensus Amino acid transporters [Amino acid tran 97.92
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 97.91
PRK09442483 panF sodium/panthothenate symporter; Provisional 97.79
PRK11017404 codB cytosine permease; Provisional 97.71
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 97.66
TIGR00813407 sss transporter, SSS family. have different number 97.57
COG0591493 PutP Na+/proline symporter [Amino acid transport a 97.43
PRK12488549 acetate permease; Provisional 97.38
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 96.93
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 96.65
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 96.57
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 96.56
PRK09395551 actP acetate permease; Provisional 96.55
PRK00701439 manganese transport protein MntH; Reviewed 96.09
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 96.03
TIGR00835425 agcS amino acid carrier protein. Members of the AG 95.99
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 95.86
PRK15419502 proline:sodium symporter PutP; Provisional 95.7
PF01566358 Nramp: Natural resistance-associated macrophage pr 95.27
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 95.09
COG1966575 CstA Carbon starvation protein, predicted membrane 95.08
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 94.77
PRK15015 701 carbon starvation protein A; Provisional 94.64
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 94.31
PRK10484523 putative transporter; Provisional 93.07
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 92.79
COG0733439 Na+-dependent transporters of the SNF family [Gene 92.7
KOG1288 945 consensus Amino acid transporters [Amino acid tran 92.0
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 89.28
COG4147529 DhlC Predicted symporter [General function predict 88.86
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 88.45
PRK15433439 branched-chain amino acid transport system 2 carri 86.85
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 81.54
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 81.05
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.2e-58  Score=455.61  Aligned_cols=402  Identities=35%  Similarity=0.609  Sum_probs=355.5

Q ss_pred             CccccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCccccHHHHHH
Q 038741           18 RSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAP--LSGNRNHTYRAAVK   95 (465)
Q Consensus        18 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~--~~~~~~~sy~~l~~   95 (465)
                      .++|.+|++++.+|.++.++|.|+|+||||++++||..|++++++.++++.||+.+|.+|++..  ..++|.++|+|+++
T Consensus        33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~  112 (437)
T KOG1303|consen   33 TPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQ  112 (437)
T ss_pred             ccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHH
Confidence            4578899999999999999999999999999999999999999999999999999999998776  44567789999999


Q ss_pred             HHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchh
Q 038741           96 TYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLS  175 (465)
Q Consensus        96 ~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~  175 (465)
                      ++||+++++++.+++.+.++|+|+.|++..+|++..+.+..|.+..      ..+.+.|+++++++.+|++++|+++.++
T Consensus       113 ~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~~~l~  186 (437)
T KOG1303|consen  113 AAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNFHSLS  186 (437)
T ss_pred             HHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCcchhH
Confidence            9999999999999999999999999999999999999988765431      2335789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCC
Q 038741          176 WLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSS  255 (465)
Q Consensus       176 ~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~  255 (465)
                      +.|..+.++++.|..+.+...+.........+...+.       ....+.  .++++|+++|+|.+|.++|||+++||+|
T Consensus       187 ~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~-------~~~~~~--~f~a~g~iaFaf~gH~v~peIq~tMk~p  257 (437)
T KOG1303|consen  187 YLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLD-------LGTIPT--VFTALGIIAFAYGGHAVLPEIQHTMKSP  257 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccCCcccCccc-------CCCCcc--hhhhhhheeeeecCCeeeeehHhhcCCc
Confidence            9999999999998888887777665544222111110       001111  1899999999999999999999999999


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCccccCccCchHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Q 038741          256 PPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQPVFYVIES  335 (465)
Q Consensus       256 ~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~  335 (465)
                          ++|+|++..+..+++++|+..++.||++||++++||++.|+.+|.|+...+++++.+|++.++.+...|+.+.+|+
T Consensus       258 ----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~  333 (437)
T KOG1303|consen  258 ----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEK  333 (437)
T ss_pred             ----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHH
Confidence                8899999999999999999999999999999999999999977899999999999999999999999999999999


Q ss_pred             HhhccCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhhHHHhhhHHHHHH
Q 038741          336 WTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPFFNEVLGLLGALAYWPLTVYFPLEMYIA  415 (465)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~filP~l~~l~  415 (465)
                      +...++++  +         +     .+....|...|+.+++.+.++|+.+|+|+++++++||+...++++++|+++|++
T Consensus       334 ~~~~~~~~--~---------~-----~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~  397 (437)
T KOG1303|consen  334 LIGVKHPD--F---------K-----KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLL  397 (437)
T ss_pred             HhccCCcc--c---------c-----ccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98755332  1         0     023478999999999999999999999999999999999999999999999999


Q ss_pred             HhccCCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 038741          416 QKNIKRGTSWWFGLQLL-NLVCFLAALGAACSSIHGLYKA  454 (465)
Q Consensus       416 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~si~~ii~~  454 (465)
                      .+|+++...+|+++|.. .++++++++...++++++++.+
T Consensus       398 ~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  398 IKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             hhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            99999999999999988 6999999999999999988753

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query465
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 83/511 (16%), Positives = 145/511 (28%), Gaps = 174/511 (34%)

Query: 14  DDDGRSKRT-GTVWTASAHIVTAIVGSGVLSLAWGIAQLGWI-TGVSTLLIFSSI--SLY 69
           D    + R   T+ +    +V   V   VL + +      ++ + + T     S+   +Y
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVE-EVLRINYK-----FLMSPIKTEQRQPSMMTRMY 112

Query: 70  SSGLLADCYRAPLSGN-----RNHTYRAAVKTYLGGRKHKICGL--VQYVLLVGMV-VGY 121
                    R  L  +     + +  R      L   +  +  L   + VL+ G++  G 
Sbjct: 113 IE------QRDRLYNDNQVFAKYNVSRLQPYLKL---RQALLELRPAKNVLIDGVLGSGK 163

Query: 122 TITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIG-------IVEM---FLSQI-PN 170
           T  A           C     +  QCK     F + +        ++EM    L QI PN
Sbjct: 164 TWVAL--------DVC---LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 171 IHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPN-LTAAD-----K 224
               S  S          + I + +   +A L       L   +   N L         K
Sbjct: 213 WTSRSDHS----------SNIKLRIHSIQAEL-----RRLLKSKPYENCLLVLLNVQNAK 257

Query: 225 TWGMFSAIGNIAFACAYLQILI-----EIQDTLKSSPPENKVMKKANVIATLTAT-TLYM 278
            W  F+       +C   +IL+     ++ D L ++   +  +   +   TLT      +
Sbjct: 258 AWNAFN------LSC---KILLTTRFKQVTDFLSAATTTHISLDHHS--MTLTPDEVKSL 306

Query: 279 LCGCFG--YAALGNHAPGNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQPVFYVIESW 336
           L          L    P  +L     P            + ++             I   
Sbjct: 307 LLKYLDCRPQDL----PREVLTTN--PR----------RLSIIAE----------SIRDG 340

Query: 337 TSTRWPKSKFVTKEYPVTIGKNNLKFSVN-LFRLTWRTIFVVMATLLSMALPFFNE---- 391
            +  W   K V  +   TI    ++ S+N L    +R +F          L  F      
Sbjct: 341 LA-TWDNWKHVNCDKLTTI----IESSLNVLEPAEYRKMF--------DRLSVFPPSAHI 387

Query: 392 ---VLGLLGALAYWPLTVYFPLEMYIAQKNIKRG--TSWWFGLQLLNLVCFLAALGAACS 446
              +L L+     W   +   + + +  K  K            +               
Sbjct: 388 PTILLSLI-----WFDVIKSDVMV-VVNKLHKYSLVEKQPKESTI--------------- 426

Query: 447 SIHGLY----------KALH-----TYKPLK 462
           SI  +Y           ALH      Y   K
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPK 457

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query465
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.71
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.51
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.4
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.65
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 97.66
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.25
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 92.83
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.71  E-value=6.5e-15  Score=149.13  Aligned_cols=363  Identities=11%  Similarity=-0.007  Sum_probs=202.9

Q ss_pred             CccccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHH
Q 038741           18 RSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTY   97 (465)
Q Consensus        18 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~   97 (465)
                      +++|+.+.++.....+++++|+|++.+|...++.|.. +++..++.++........+.|.....   ++.-+..+..++.
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~---p~~Gg~y~~~~~~   80 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLD---PSPGGSYAYARRC   80 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHC---CCTTTHHHHHHHH
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccC---CCCCCchhhHHhH
Confidence            3456788999999999999999999999998888864 67777777787777777777754332   2444677788999


Q ss_pred             cCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHH-HHHHHHhcCCCcCchhH
Q 038741           98 LGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIG-IVEMFLSQIPNIHKLSW  176 (465)
Q Consensus        98 ~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~-~i~~pl~~~~~l~~l~~  176 (465)
                      +|++.+++..+..++.......++....++++....+.     ..+    .+  ..+.+... ++++-....+..|....
T Consensus        81 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~~--~~~~~~~~~~~~~~~in~~g~~~~~~  149 (445)
T 3l1l_A           81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI-----LKD----PW--VLTITCVVVLWIFVLLNIVGPKMITR  149 (445)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGG-----GGS----HH--HHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc-----ccc----cH--HHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            99999999999998887777777777766665433221     000    11  11111111 11122223334455555


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCCC
Q 038741          177 LSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSP  256 (465)
Q Consensus       177 ~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~  256 (465)
                      +........+...++.+...+.   ..++... .+  ++.  ........++..++....|+|.+.+....+.+|+||| 
T Consensus       150 ~~~~~~~~~i~~~~~~~i~~~~---~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p-  220 (445)
T 3l1l_A          150 VQAVATVLALIPIVGIAVFGWF---WFRGETY-MA--AWN--VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP-  220 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTST---TCCCCCC-CC--C-------------HHHHHHHHHHTTTTTTHHHHGGGGBSSH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HhChhhc-cc--ccC--ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc-
Confidence            5444433333211111111111   1111100 00  110  0111124567889999999999999999999999998 


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCc----ccc---CccCchHHHHHHHHHHHHHHHHhhhhccccH
Q 038741          257 PENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGN----LLA---GFYKPFWLVDMANSFIVVHLLGAYQVMAQPV  329 (465)
Q Consensus       257 ~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~~~----il~---~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~  329 (465)
                        +|+.+|++..+..++.++|+...+......+.+...+    ..+   .. ..++...+..+...++.+.+........
T Consensus       221 --~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (445)
T 3l1l_A          221 --KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMA-LGDTAGAIVSFCAAAGCLGSLGGWTLLA  297 (445)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHH-HCTTHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred             --cccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              4789999999999999999998887666655432111    111   11 0123334445555555555544333333


Q ss_pred             HHHHHHHhhc-cCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHc----cchHHHHHHHhhhhhhhH
Q 038741          330 FYVIESWTST-RWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMAL----PFFNEVLGLLGALAYWPL  404 (465)
Q Consensus       330 ~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~v----p~~~~i~~l~Ga~~~~~l  404 (465)
                      -+.+...-++ ..|  +++.+.++.+.|         ...+.+..++..+ ..+....    ..++.+.++.+  ....+
T Consensus       298 sR~~~~~a~dg~lP--~~~~~~~~~~~P---------~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~--~~~~~  363 (445)
T 3l1l_A          298 GQTAKAAADDGLFP--PIFARVNKAGTP---------VAGLIIVGILMTI-FQLSSISPNATKEFGLVSSVSV--IFTLV  363 (445)
T ss_dssp             HHHHHHHHHTTSSC--GGGGCCCTTCCC---------HHHHHHHHHHHHH-HHHSTTSHHHHCCCHHHHHHHH--HHHHH
T ss_pred             HHHHHHHHhCCCCc--HHHHhcCCCCCC---------HHHHHHHHHHHHH-HHHHHHcccHHHHHHHHHHHHH--HHHHH
Confidence            3333333221 222  112221111112         2333332222222 1111112    24566666655  24578


Q ss_pred             HHhhhHHHHHHHhccCC
Q 038741          405 TVYFPLEMYIAQKNIKR  421 (465)
Q Consensus       405 ~filP~l~~l~~~~~~~  421 (465)
                      .|.++++.+++.+|+++
T Consensus       364 ~y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          364 PYLYTCAALLLLGHGHF  380 (445)
T ss_dssp             HHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHHHHHHhhcCc
Confidence            89999999999875544
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query465
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 93.14
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.14  E-value=3.7  Score=38.90  Aligned_cols=108  Identities=15%  Similarity=0.040  Sum_probs=65.0

Q ss_pred             cHHHHHHHHHhhhhhhhhhh-HHHHHHhhchH----HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHc
Q 038741           24 TVWTASAHIVTAIVGSGVLS-LAWGIAQLGWI----TGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYL   98 (465)
Q Consensus        24 s~~~a~~~l~~~~iG~GiL~-LP~af~~~G~~----~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~   98 (465)
                      |..+-+...++..+|.|=+= .||-..+-|-.    +=.+.+++++.=..+.=..+.+-.+.    .....++.+.....
T Consensus         6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~----g~i~~~~~i~~~~~   81 (509)
T d2a65a1           6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGA----QGHGTTPAIFYLLW   81 (509)
T ss_dssp             CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT----TTCCSHHHHHHHHS
T ss_pred             ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC----CcccHHHHHHHHhc
Confidence            56778888899999997554 99998766522    11222222222222222233332222    13457777777776


Q ss_pred             CCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 038741           99 GGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKS  135 (465)
Q Consensus        99 G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~  135 (465)
                      +.+...-+.+...+..+..++-|.+..+..+..+...
T Consensus        82 ~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s  118 (509)
T d2a65a1          82 RNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF  118 (509)
T ss_dssp             CSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6555455666677777777888888888777666554