Citrus Sinensis ID: 038747

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-
SSALTDVDSSMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISKHLENFNDDNAYLIISYQVYDDAGHDNLTCLFKDKTLADISYENIHRPILRTLLGPYDGIFCLCDDSLIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIERPRIPYSSHESLGLFNNSVSLLHFDKSSHYIDIWLMSDMNWIQQFAIGPFLGVMSPRGIWKNNAVLMESDNGTLLLYDLIVEEVRDLGRFTRGTLGTAILTYCYKESLVRLKRVEDDRLSDPFDIPWHIIEDNQLDITLFGRNSRFDIILN
ccccccccccccccHHHHHHHcccccHHHHHHHHcccHHHHHHcccHHHHHHHHHHccccccEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEEccEEEEEcccEEEEEccccccEEEcccccccccccccccEEEEEEEEccccccEEEEEEEEEccccccccccccEEEEEEcccccEEEEcccccccccccccccccEEEccEEEEEEEEcccccccEEEEEEccccEEEEEcccccccccccEEEEEccEEEEEEEcccccEEEEEEEccccEEEEEEEcccccccccEEEEEccEEEEEEEccEEEEEEccccEEEEEccccccccccEEEEEEEEccccccccccccccccccccccccccccEEEEEEEccccEEEEEcc
cHHHHHccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEEcccEEEEEccccccccccccccccccccccccEEEEEEEcccEEEEEEccccEEEEccccccEEEcccccccccccccEEEEEEEEccccccccEEEEEEEEccccccccccccEEEEEEEEcccccEEEEccccccccccccccccEEEccEEEEEEEEccccccEEEEEEEccccccccccccccccccccEEEEEHcEEEEEEEcccccEEEEEEEEEEEcHEEEEEccccccccEEEEEcccEEEEEEcccEEEEEEEEEcccEEEEEEEcccccccEEEEcccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEc
ssaltdvdssmlmpeDVRLEILSRLPVKSLMRLRCVCKSWyalienpkFISKHLenfnddnaYLIISYQvyddaghdnltclfkdktladisyenihrpilrtllgpydgifclcddsliflwnpatkecrtlpnysnflptcatflyenaifgldhtsgdYKVVFICELWNeqieapyeHSLVAIYTSTTdswrvskgnvewipydfkshfkstnlNGVFYWLVsrddgdhsnimlsfhisdeefreierpripyssheslglfnnsvsllhfdkssHYIDIWLMSDMNWIQQFaigpflgvmsprgiwknnavlmesdngTLLLYDLIVEEVRDLGRFTRGTLGTAILTYCYKESLVRLKrveddrlsdpfdipwhiiednqlditlfgrnsrfdiiln
ssaltdvdssmlmpedVRLEilsrlpvkslMRLRCVCKSWYALIENPKFISKHLENFNDDNAYLIISYQVYDDAGHDNLTCLFKDKTLADISYENIHRPILRTLLGPYDGIFCLCDDSLIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIERPRIPYSSHESLGLFNNSVSLLHFDKSSHYIDIWLMSDMNWIQQFAIGPFLGVMSPRGIWKNNAVLMESDNGTLLLYDLIVEEVRDLGRftrgtlgtailtycYKESLVRLKRVEDDRLSdpfdipwhiiednqlditlfgrnsrfdiiln
SSALTDVDSSMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISKHLENFNDDNAYLIISYQVYDDAGHDNLTCLFKDKTLADISYENIHRPILRTLLGPYDGIFCLCDDSLIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDeefreierpripYSSHESLGLFNNSVSLLHFDKSSHYIDIWLMSDMNWIQQFAIGPFLGVMSPRGIWKNNAVLMESDNGTLLLYDLIVEEVRDLGRFTRGTLGTAILTYCYKESLVRLKRVEDDRLSDPFDIPWHIIEDNQLDITLFGRNSRFDIILN
****************VRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISKHLENFNDDNAYLIISYQVYDDAGHDNLTCLFKDKTLADISYENIHRPILRTLLGPYDGIFCLCDDSLIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIERPRIPYSSHESLGLFNNSVSLLHFDKSSHYIDIWLMSDMNWIQQFAIGPFLGVMSPRGIWKNNAVLMESDNGTLLLYDLIVEEVRDLGRFTRGTLGTAILTYCYKESLVRLKRVEDDRLSDPFDIPWHIIEDNQLDITLFGRNSRFDII**
***************DVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISKHLENFNDDNAYLIISYQVYDDAGHDNLTCLFKDKTLADISYENIHRPILRTLLGPYDGIFCLCDDSLIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIERPRIPYSSHESLGLFNNSVSLLHFDKSSHYIDIWLMSDMNWIQQFAIGPFLGVMSPRGIWKNNAVLMESDNGTLLLYDLIVEEVRDLGRFTRGTLGTAILTYCYKESLV***************IPWHIIEDNQLDITLFGRNSRFDIILN
*********SMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISKHLENFNDDNAYLIISYQVYDDAGHDNLTCLFKDKTLADISYENIHRPILRTLLGPYDGIFCLCDDSLIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIERPRIPYSSHESLGLFNNSVSLLHFDKSSHYIDIWLMSDMNWIQQFAIGPFLGVMSPRGIWKNNAVLMESDNGTLLLYDLIVEEVRDLGRFTRGTLGTAILTYCYKESLVRLKRVEDDRLSDPFDIPWHIIEDNQLDITLFGRNSRFDIILN
*********SMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISKHLENFNDDNAYLIISYQVYDDAGHDNLTCLFKDKTLADISYENIHRPILRTLLGPYDGIFCLCDDSLIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIERPRIPYSSHESLGLFNNSVSLLHFDKSSHYIDIWLMSDMNWIQQFAIGPFLGVMSPRGIWKNNAVLMESDNGTLLLYDLIVEEVRDLGRFTRGTLGTAILTYCYKESLVRLKRVEDDRLSDPFDIPWHIIEDNQLDITLFGRNSRFDIILN
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SSALTDVDSSMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISKHLENFNDDNAYLIISYQVYDDAGHDNLTCLFKDKTLADISYENIHRPILRTLLGPYDGIFCLCDDSLIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIERPRIPYSSHESLGLFNNSVSLLHFDKSSHYIDIWLMSDMNWIQQFAIGPFLGVMSPRGIWKNNAVLMESDNGTLLLYDLIVEEVRDLGRFTRGTLGTAILTYCYKESLVRLKRVEDDRLSDPFDIPWHIIEDNQLDITLFGRNSRFDIILN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query401 2.2.26 [Sep-21-2011]
Q8GXC7427 F-box/kelch-repeat protei yes no 0.835 0.784 0.251 2e-15
Q9LUP1381 Putative F-box/kelch-repe no no 0.543 0.572 0.279 3e-15
Q9SAB5363 Putative F-box/LRR-repeat no no 0.812 0.898 0.257 7e-15
Q4PSN6410 F-box/WD-40 repeat-contai no no 0.857 0.839 0.253 1e-13
Q9FK54379 F-box protein At5g18160 O no no 0.633 0.670 0.254 2e-13
Q9SU30413 F-box protein CPR30 OS=Ar no no 0.758 0.736 0.259 4e-13
Q9SSQ2423 F-box protein At1g52490 O no no 0.670 0.635 0.248 5e-13
Q9LUJ1339 F-box protein At3g22700 O no no 0.670 0.793 0.232 1e-12
Q9LU24360 Putative F-box protein At no no 0.598 0.666 0.255 2e-12
Q9LUP8388 Putative F-box protein At no no 0.658 0.680 0.268 2e-12
>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 Back     alignment and function desciption
 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 173/401 (43%), Gaps = 66/401 (16%)

Query: 10  SMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISKHL------ENFNDDNAY 63
           S+++P ++  EIL RLP KS+ R RCV K +  L  +P F   HL      E+    +  
Sbjct: 33  SLVLPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRK 92

Query: 64  LIIS-YQVYD------DAGHDNLTCLFKDKTLAD---ISYENIH-----------RPILR 102
           LI+S + +Y         G  +L  +  +  L D   I  E I            R +L+
Sbjct: 93  LIVSSHNLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLK 152

Query: 103 -----------TLLGPYDGIFCLC-DDSLIFLWNPATKECRTLPNYSNFLPTCATFLYEN 150
                       ++G  +G+ C+   +  +FL+NP T + + LP   NF P    +  +N
Sbjct: 153 LNAKSYRRNWVEIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLP--ENFRPKSVEYERDN 210

Query: 151 AI---FGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTSTTDSW-RVSKGNVEWIPY 206
                FG D  + DYK+V +     + ++A       ++Y+   DSW R+   N E   +
Sbjct: 211 FQTYGFGFDGLTDDYKLVKLVATSEDILDA-------SVYSLKADSWRRICNLNYE---H 260

Query: 207 DFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIERP-RIPYSSHE----S 261
           +  S+    + NG  +W+ + +   +  ++++F I  EEFRE+  P      SH      
Sbjct: 261 NDGSYTSGVHFNGAIHWVFT-ESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFV 319

Query: 262 LGLFNNSVSLLHFDKSSHYIDIWLMSDMNWIQQFA---IGPFLGVMSPRGIWKNNAVLME 318
           +G  N  + +++     H  DIW+MS+    + ++   I      M P    KN+  ++ 
Sbjct: 320 VGSLNGRLCVVNSCYDVH-DDIWVMSEYGEAKSWSRIRINLLYRSMKPLCSTKNDEEVLL 378

Query: 319 SDNGTLLLYDLIVEEVRDLGRFTRGTLGTAILTYCYKESLV 359
             +G L+LY+       +LG      L        Y ESL+
Sbjct: 379 ELDGDLVLYNFETNASSNLG-ICGVKLSDGFEANTYVESLI 418

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LUP1|FBK61_ARATH Putative F-box/kelch-repeat protein At3g17570 OS=Arabidopsis thaliana GN=At3g17570 PE=4 SV=1 Back     alignment and function description
>sp|Q9SAB5|FBLK2_ARATH Putative F-box/LRR-repeat/kelch-repeat protein At1g11620 OS=Arabidopsis thaliana GN=At1g11620 PE=4 SV=1 Back     alignment and function description
>sp|Q4PSN6|FBW1_ARATH F-box/WD-40 repeat-containing protein 1 OS=Arabidopsis thaliana GN=FBW1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FK54|FB260_ARATH F-box protein At5g18160 OS=Arabidopsis thaliana GN=At5g18160 PE=2 SV=1 Back     alignment and function description
>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2 Back     alignment and function description
>sp|Q9SSQ2|FB55_ARATH F-box protein At1g52490 OS=Arabidopsis thaliana GN=At1g52490 PE=4 SV=1 Back     alignment and function description
>sp|Q9LUJ1|FB324_ARATH F-box protein At3g22700 OS=Arabidopsis thaliana GN=At3g22700 PE=2 SV=1 Back     alignment and function description
>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1 Back     alignment and function description
>sp|Q9LUP8|FB153_ARATH Putative F-box protein At3g17490 OS=Arabidopsis thaliana GN=At3g17490 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query401
224119696367 predicted protein [Populus trichocarpa] 0.857 0.937 0.371 3e-51
224133722443 predicted protein [Populus trichocarpa] 0.852 0.772 0.353 1e-43
224117590441 f-box family protein [Populus trichocarp 0.832 0.757 0.358 2e-41
224119700272 predicted protein [Populus trichocarpa] 0.591 0.871 0.384 3e-34
162134187394 S-locus F-box-like protein b [Petunia in 0.860 0.875 0.298 6e-31
59896627389 non-S F-box protein 1 [Petunia axillaris 0.778 0.802 0.302 2e-29
451321025392 S-Locus F-box 6-S21 [Pyrus x bretschneid 0.783 0.801 0.327 7e-29
197253321392 SFBB34-alpha [Pyrus x bretschneideri] 0.783 0.801 0.327 7e-29
148923044388 class S F-box protein [Nicotiana alata] 0.847 0.876 0.298 8e-29
305644341394 S-locus F-box brothers [Malus x domestic 0.763 0.776 0.319 8e-29
>gi|224119696|ref|XP_002318137.1| predicted protein [Populus trichocarpa] gi|222858810|gb|EEE96357.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 134/361 (37%), Positives = 212/361 (58%), Gaps = 17/361 (4%)

Query: 7   VDSSMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISKHLEN-FNDDNAYLI 65
            ++  L+PEDV +EILS LPVK+L++ +CVCKSWY +I +  FIS HL N +N+  +  +
Sbjct: 3   TENGCLLPEDVIIEILSLLPVKTLLQFKCVCKSWYGIITSSNFISLHLNNHYNNIKSGHL 62

Query: 66  ISYQVYDDAGHDNLTCLFKDKTLADISYENIHRPILRTLLGPYDGIFCL--CDDSLIFLW 123
           +++ V        L  LF+D++L D+S++ +  PI   L GP +GIF +   D S   LW
Sbjct: 63  LAHFVC-----PQLLELFQDESLTDLSHQGLDPPIRGRLCGPCNGIFYVDSEDSSGSGLW 117

Query: 124 NPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWN-EQIEAPYEHS 182
           NPATKE + LP       +   +  ++  FG D  + DYKVV I E +  E     +  S
Sbjct: 118 NPATKEFKLLPEKIRNKSSLPLYYEDSYGFGFDPVTNDYKVVVIRESYTREYYLEKFPSS 177

Query: 183 LVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHIS 242
           LV +YT  TDSWR   G+++   Y    ++  TN++GV+YW      G H N++LSF+++
Sbjct: 178 LVIVYTLRTDSWRCW-GSLDQ-GYTLLGNYCYTNVDGVYYWQAGH--GVHMNVILSFNMA 233

Query: 243 DEEFREIERPRIPYSSHES-LGLFNNSVSLLHFDKSSHYIDIWLMSDMNWIQQFAIGPFL 301
            + F+EI+ P     ++ + L L+++S++         ++DIW++++  WI+QF   P L
Sbjct: 234 TDAFQEIQEPDYDKPAYSTRLILYHDSIAFSTVHNVEKFLDIWVLNEGCWIRQFKSRPLL 293

Query: 302 GVMSPRGIWKNNAVLMESDNGTLLLYDLIVEEVRDLGRFTRGTLGTAILTYCYKESLVRL 361
            + +P   WKN  V+++SDN  L+LYD   +E++DL RF +GT G       Y+ESLV +
Sbjct: 294 ELRNPVAHWKNGNVILDSDNDQLMLYDTNKQELKDL-RF-KGT-GVCYEILVYRESLVSI 350

Query: 362 K 362
           K
Sbjct: 351 K 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224133722|ref|XP_002327664.1| predicted protein [Populus trichocarpa] gi|222836749|gb|EEE75142.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224117590|ref|XP_002331674.1| f-box family protein [Populus trichocarpa] gi|222874093|gb|EEF11224.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224119700|ref|XP_002318138.1| predicted protein [Populus trichocarpa] gi|222858811|gb|EEE96358.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|162134187|gb|ABX82525.1| S-locus F-box-like protein b [Petunia integrifolia subsp. inflata] Back     alignment and taxonomy information
>gi|59896627|gb|AAX11682.1| non-S F-box protein 1 [Petunia axillaris subsp. axillaris] Back     alignment and taxonomy information
>gi|451321025|emb|CCH26216.2| S-Locus F-box 6-S21 [Pyrus x bretschneideri] Back     alignment and taxonomy information
>gi|197253321|gb|ACH54095.1| SFBB34-alpha [Pyrus x bretschneideri] Back     alignment and taxonomy information
>gi|148923044|gb|ABR18786.1| class S F-box protein [Nicotiana alata] Back     alignment and taxonomy information
>gi|305644341|gb|ADM53772.1| S-locus F-box brothers [Malus x domestica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query401
TAIR|locus:2090482381 AT3G17570 "AT3G17570" [Arabido 0.526 0.553 0.292 4.1e-15
TAIR|locus:2089473410 AT3G21410 "AT3G21410" [Arabido 0.857 0.839 0.260 1e-13
TAIR|locus:2027397363 AT1G11620 "AT1G11620" [Arabido 0.815 0.900 0.271 1.5e-13
TAIR|locus:2090507388 AT3G17490 "AT3G17490" [Arabido 0.650 0.672 0.261 6.1e-12
TAIR|locus:2157834359 AT5G49610 "AT5G49610" [Arabido 0.521 0.582 0.279 1.4e-11
TAIR|locus:2076196364 AT3G23880 "AT3G23880" [Arabido 0.760 0.837 0.246 1.9e-11
TAIR|locus:2127465402 AT4G22390 "AT4G22390" [Arabido 0.658 0.656 0.225 4.3e-11
TAIR|locus:2045039376 AT2G04920 "AT2G04920" [Arabido 0.673 0.718 0.256 4.6e-11
TAIR|locus:2090577396 AT3G17540 "AT3G17540" [Arabido 0.418 0.424 0.292 6.9e-11
TAIR|locus:2202099312 AT1G11270 "AT1G11270" [Arabido 0.536 0.689 0.276 9.4e-11
TAIR|locus:2090482 AT3G17570 "AT3G17570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 214 (80.4 bits), Expect = 4.1e-15, P = 4.1e-15
 Identities = 67/229 (29%), Positives = 106/229 (46%)

Query:    13 MPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISKHLENFNDDNAYLIISYQVYD 72
             +P D+  EILSR+P  SL +L+  CK WY L ++P+F+ KH+     +    ++S +VY 
Sbjct:     5 LPRDLETEILSRVPATSLQKLKPTCKRWYTLFKDPEFLKKHVGRAERE-VISLMSLRVYS 63

Query:    73 DAGHDNLTCLFKDKTLADI--SYENIHRPILRTLLGPYDGIFCLCDDSLIFLWNPATKEC 130
              +   NL+ +     +  +  S ++     +  +      + C  DDS + +WNP T E 
Sbjct:    64 LSV--NLSGIHSSVEMTGMLNSLKDSEDVKISDITECNGLLLCTTDDSRLVVWNPYTGET 121

Query:   131 RTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTST 190
             R +P  SN  P     +Y+  + G D+T+       I   ++  I+  YE     IY   
Sbjct:   122 RWIPYKSNS-PY---EMYQKFVLGYDNTNKSRYSYKILRCYHGLIDFGYEFE---IYEFN 174

Query:   191 TDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSF 239
             + SWR    N       F+S  K   L G  YW  S  +G H  I+L F
Sbjct:   175 SHSWRRFYDNSP--NCSFES--KGVTLKGNTYWFASDTEGRH--IILRF 217
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2089473 AT3G21410 "AT3G21410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027397 AT1G11620 "AT1G11620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090507 AT3G17490 "AT3G17490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157834 AT5G49610 "AT5G49610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127465 AT4G22390 "AT4G22390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045039 AT2G04920 "AT2G04920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090577 AT3G17540 "AT3G17540" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202099 AT1G11270 "AT1G11270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00120932
hypothetical protein (367 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 3e-25
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 6e-09
pfam0064648 pfam00646, F-box, F-box domain 1e-08
pfam1293747 pfam12937, F-box-like, F-box-like 4e-07
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score =  102 bits (256), Expect = 3e-25
 Identities = 57/245 (23%), Positives = 93/245 (37%), Gaps = 32/245 (13%)

Query: 105 LGPYDGIFCLCDDSLIFLWNPATKECRTL--PNYSNFLPTCATFLYENAIFGLDHTSGDY 162
           + P DG+ C      + +WNP+T + R L  P          T+       G D     Y
Sbjct: 1   VVPCDGLICFSYGKRLVVWNPSTGQSRWLPTPKSRRSNKESDTY-----FLGYDPIEKQY 55

Query: 163 KVVFICELWNEQIEAPYEHSLVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTN--LNGV 220
           KV+   +            S   +YT  ++SWR  + +    P       KS    +NGV
Sbjct: 56  KVLCFSD-----RSGNRNQSEHQVYTLGSNSWRTIECSPPHHPL------KSRGVCINGV 104

Query: 221 FYWLVSRDDGDHSNIMLSFHISDEEFRE-IERPRIPYSSHESLGLFN--NSVSLLHFDKS 277
            Y+L      +    ++SF +S E F+E I  P     S + L L N    +++L   K 
Sbjct: 105 LYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKD 164

Query: 278 SHYIDIWLMSD---MNWIQQFAIGP-----FLGVMSPRG-IWKNNAVLMESDNGTLLLYD 328
           ++  D+W+++D     W + F +        +      G   K   VL   D     ++ 
Sbjct: 165 TNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFY 224

Query: 329 LIVEE 333
             V E
Sbjct: 225 YNVGE 229

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 401
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.68
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.59
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.46
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.9
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.75
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.73
PHA02713557 hypothetical protein; Provisional 98.72
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.62
PHA02713557 hypothetical protein; Provisional 98.59
PLN02153341 epithiospecifier protein 98.55
PHA03098534 kelch-like protein; Provisional 98.53
PLN02193470 nitrile-specifier protein 98.52
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.39
PHA02790480 Kelch-like protein; Provisional 98.39
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.37
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.17
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.11
PHA03098534 kelch-like protein; Provisional 98.07
PLN02193470 nitrile-specifier protein 98.03
PHA02790480 Kelch-like protein; Provisional 97.95
PLN02153341 epithiospecifier protein 97.94
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 97.66
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 97.59
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.42
KOG4693392 consensus Uncharacterized conserved protein, conta 97.42
KOG0281499 consensus Beta-TrCP (transducin repeats containing 97.39
KOG4693392 consensus Uncharacterized conserved protein, conta 97.38
KOG1230 521 consensus Protein containing repeated kelch motifs 97.24
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 96.89
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.44
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.27
KOG2997366 consensus F-box protein FBX9 [General function pre 95.55
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 94.71
PF1396450 Kelch_6: Kelch motif 94.05
KOG1230 521 consensus Protein containing repeated kelch motifs 93.7
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 93.5
smart00284255 OLF Olfactomedin-like domains. 92.3
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 91.64
KOG4341483 consensus F-box protein containing LRR [General fu 91.13
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 90.67
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 90.22
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 87.76
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 87.74
PF1396450 Kelch_6: Kelch motif 86.66
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 84.13
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 83.0
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 82.01
PRK11138 394 outer membrane biogenesis protein BamB; Provisiona 81.98
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 81.14
COG3055381 Uncharacterized protein conserved in bacteria [Fun 81.06
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 80.91
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=1.9e-34  Score=257.98  Aligned_cols=216  Identities=22%  Similarity=0.403  Sum_probs=161.8

Q ss_pred             eccccceEEEeeCCceEEEccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEeccccCCCCCcceE
Q 038747          105 LGPYDGIFCLCDDSLIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLV  184 (401)
Q Consensus       105 ~~s~~GLl~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~  184 (401)
                      ++|||||||+.....++||||+||+++.||+++....   ......++||||+.+++||||++......     .....+
T Consensus         1 ~~sCnGLlc~~~~~~~~V~NP~T~~~~~LP~~~~~~~---~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-----~~~~~~   72 (230)
T TIGR01640         1 VVPCDGLICFSYGKRLVVWNPSTGQSRWLPTPKSRRS---NKESDTYFLGYDPIEKQYKVLCFSDRSGN-----RNQSEH   72 (230)
T ss_pred             CcccceEEEEecCCcEEEECCCCCCEEecCCCCCccc---ccccceEEEeecccCCcEEEEEEEeecCC-----CCCccE
Confidence            4799999999988899999999999999998754211   11122689999999999999999753211     135689


Q ss_pred             EEEEcCCCCccccCCCCcccceeeeCCCceeEECceEEEEEeecCCCCccEEEEEEcCCceEe-EecCCCCCCCC--Cce
Q 038747          185 AIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFR-EIERPRIPYSS--HES  261 (401)
Q Consensus       185 ~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~~-~i~lP~~~~~~--~~~  261 (401)
                      +||++++++||.+...+   +..... ..+|++||++||++....+.....|++||+++|+|+ .+++|......  ...
T Consensus        73 ~Vys~~~~~Wr~~~~~~---~~~~~~-~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~  148 (230)
T TIGR01640        73 QVYTLGSNSWRTIECSP---PHHPLK-SRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLS  148 (230)
T ss_pred             EEEEeCCCCccccccCC---CCcccc-CCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceE
Confidence            99999999999987421   221122 249999999999997652222238999999999999 58998754321  234


Q ss_pred             eEEEcCeEEEEeecCCCCeEEEEEEcC---CcEEEEEEEcC--CCCc---ccceEEeeCCEEEEEeeC--Ce-EEEEECC
Q 038747          262 LGLFNNSVSLLHFDKSSHYIDIWLMSD---MNWIQQFAIGP--FLGV---MSPRGIWKNNAVLMESDN--GT-LLLYDLI  330 (401)
Q Consensus       262 l~~~~g~L~~~~~~~~~~~l~IW~l~~---~~W~~~~~i~~--~~~~---~~p~~~~~~~~il~~~~~--~~-l~~yd~~  330 (401)
                      |++++|+||++........++||+|++   ..|+|+++|+.  ...+   ..|+++..+|+|++....  +. ++.||++
T Consensus       149 L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~  228 (230)
T TIGR01640       149 LINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVG  228 (230)
T ss_pred             EEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEecc
Confidence            999999999776433345699999997   57999999973  2222   347888899999997664  34 9999998


Q ss_pred             CC
Q 038747          331 VE  332 (401)
Q Consensus       331 t~  332 (401)
                      ++
T Consensus       229 ~~  230 (230)
T TIGR01640       229 EN  230 (230)
T ss_pred             CC
Confidence            75

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 7e-07
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 8e-06
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 9e-06
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 1e-05
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 2e-04
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 3e-04
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure
 Score = 44.9 bits (107), Expect = 7e-07
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 13 MPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENP 47
          +P+++ L I S L +  L+++  VCK WY L  + 
Sbjct: 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE 46
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query401
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.11
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 99.11
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.03
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 98.99
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.96
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.95
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.95
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.94
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.9
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 98.84
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.82
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.81
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.73
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.73
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.68
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.55
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.54
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.39
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.34
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.34
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.96
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.61
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.61
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 97.37
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.15
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 97.13
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.33
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 93.23
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 93.07
3jrp_A379 Fusion protein of protein transport protein SEC13 91.84
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 91.4
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 88.62
3jro_A 753 Fusion protein of protein transport protein SEC13 88.54
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 87.03
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 86.69
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 83.32
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 81.62
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
Probab=99.11  E-value=3.7e-11  Score=79.73  Aligned_cols=46  Identities=28%  Similarity=0.492  Sum_probs=39.2

Q ss_pred             cCCccCCCCHHHHHHHHhcCChhhhhhhhccchhhhcccCChhhHH
Q 038747            6 DVDSSMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFIS   51 (401)
Q Consensus         6 ~~~~~~~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~~~~F~~   51 (401)
                      ....+..||+|++.+||++||++++.++++|||+|+.++.++.|-+
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~   50 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ   50 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence            3456889999999999999999999999999999999999988743
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 401
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 6e-09
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 2e-05
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 4e-05
d1nexb1100 a.158.1.1 (B:270-369) Cdc4 F-box and linker domain 2e-04
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (117), Expect = 6e-09
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 13 MPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKF 49
          +P+++ L I S L +  L+++  VCK WY L  +   
Sbjct: 4  LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query401
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.28
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.65
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.47
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.23
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.2
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.2
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 97.46
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.0
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 80.28
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 80.18
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=9.5e-13  Score=80.32  Aligned_cols=40  Identities=30%  Similarity=0.618  Sum_probs=37.5

Q ss_pred             cCCCCHHHHHHHHhcCChhhhhhhhccchhhhcccCChhh
Q 038747           10 SMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKF   49 (401)
Q Consensus        10 ~~~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~~~~F   49 (401)
                      +..||+|++.+||++||+++|+|+++|||+|+++++++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            4689999999999999999999999999999999998864
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure