Citrus Sinensis ID: 038767

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
Protein Sequence
MAGGIKEKKQKLERRSRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDIQYRDKFTWLMGYNSHSCYLYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLFEGEKNIINLPVWREFSIAKATFSATPVSPDCVIFVIWVGVMEISCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSLDAIVAFNVASQNWEILPYPPSILFMYKYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKGCAFANIMHWFGPYSYIRDQWSEFIRKPVESDSSKVAPRIRGYEYWKEEDTTQIWIQPL
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHccccccEEEcccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccEEEccccccccccccccccEEEEEEEccccccccEEEEEEEcccccEEEEEEEcccccEEEEEEccccccEEEEEEEccEEEEEEccccEEEEEEcccccEEEEcccccccccEEEEEEEccEEEEEEEEcccccEEEEEEEcccccEEEEccccccEEEEcccccEEEEccccccccccEEEcccccccccccccEEEEcccccccccccccccccccccccccccEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHcHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccEEEEccccccEEEccccccEEEEEccccccccccccEEEEccccEEEEEcccccEcccccccccccEEEEEcccccccEEEEEEEEccccEEEEEEEccccccEEEEEccccccccccEEEEccEEEEEEccccEEEEEcccccccEEEccccccccccEEEEEcccEEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccccccccccccccEEEEEccccccccccEEEEEEEcccccccccccccccccccccccccEEEEcc
Coil and Loop (DISEMBL)
MAGGIKEKKQKlerrsrsdlpLTIINLIVSRLYVVYQIRFRAVCKRWRSVDIQYRDKFTWLmgynshscylydpchkqRFTVfisdknrttllgarpldskngwvlfegekniinlpvwrEFSIAKatfsatpvspdcVIFVIWVGVMEIScisicrpgdttwtelrfqdNYRYVKNMVRADGFLYCSFFSLDAIVAFNVAsqnweilpyppsiLFMYKYLTEYDGSLLILAKVVnssgyrvftlnrsqmdwfeieclddralfmgasclwwvpvekgcafanimhwfgpysyiRDQWSEFIrkpvesdsskvaprirgyeywkeedttqiwiqpl
Flexible Loop (DISEMBL)
maggikekkqklerrsrsdlpltiiNLIVSRLYVVYQIRFRAVCKRWRSVDIQYRDKFTWLMGYNSHSCYLYDPCHKQRFTVFISDknrttllgarpldskngwVLFEGEKNIINLPVWREFSIAKatfsatpvspDCVIFVIWVGVMEISCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSLDAIVAFNVASQNWEILPYPPSILFMYKYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKGCAFANIMHWFGPYSYIRDQWSEFIRkpvesdsskvaprirgyeywkeedttqiwiqpl
Low Complexity Region (SEG)
MAGGIKEKKQKLERRSRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDIQYRDKFTWLMGYNSHSCYLYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLFEGEKNIINLPVWREFSIAKATFSATPVSPDCVIFVIWVGVMEISCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSLDAIVAFNVASQNWEILPYPPSILFMYKYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKGCAFANIMHWFGPYSYIRDQWSEFIRKPVESDSSKVAPRIRGYEYWKEEDTTQIWIQPL
Disordered region (IsUnstruct)
*******************LPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDIQYRDKFTWLMGYNSHSCYLYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLFEGEKNIINLPVWREFSIAKATFSATPVSPDCVIFVIWVGVMEISCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSLDAIVAFNVASQNWEILPYPPSILFMYKYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKGCAFANIMHWFGPYSYIRDQWSEFIRKPV******VAPRIRGYEYWKEEDTTQIWI***
Disordered Region (DISOPRED)
*********************LTIINLIVSRLYVVYQIRFRAVCKRWRSVDIQYRDKFTWLMGYNSHSCYLYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLFEGEKNIINLPVWREFSIAKATFSATPVSPDCVIFVIWVGVMEISCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSLDAIVAFNVASQNWEILPYPPSILFMYKYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKGCAFANIMHWFGPYSYIRDQWSEFIRKPVESDSSKVAPRIRGYEYWKEEDTTQIWIQPL
Disordered Region (DISEMBL)
****************RSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDIQYRDKFTWLMGYNSHSCYLYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLFEGEKNIINLPVWREFSIAKATFSATPVSPDCVIFVIWVGVMEISCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSLDAIVAFNVASQNWEILPYPPSILFMYKYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKGCAFANIMHWFGPYSYIRDQWSEFIRKP********APRIRGYEYWKEEDTTQIWIQPL
Disordered Region (DISPRO)
***********LERRSRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDIQYRDKFTWLMGYNSHSCYLYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLFEGEKNIINLPVWREFSIAKATFSATPVSPDCVIFVIWVGVMEISCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSLDAIVAFNVASQNWEILPYPPSILFMYKYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKGCAFANIMHWFGPYSYIRDQWSEFIRKPVESDSSKVAPRIRGYEYWKEEDTTQIWIQPL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGGIKEKKQKLERRSRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDIQYRDKFTWLMGYNSHSCYLYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLFEGEKNIINLPVWREFSIAKATFSATPVSPDCVIFVIWVGVMEISCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSLDAIVAFNVASQNWEILPYPPSILFMYKYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKGCAFANIMHWFGPYSYIRDQWSEFIRKPVESDSSKVAPRIRGYEYWKEEDTTQIWIQPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	336	2.2.26 [Sep-21-2011]
Q9FVS1	352	F-box/kelch-repeat protei	yes	no	0.904	0.863	0.239	7e-15
Q9XIA2	481	F-box protein At1g49360 O	no	no	0.830	0.580	0.256	2e-14
Q9LSA5	380	F-box/kelch-repeat protei	no	no	0.747	0.660	0.243	1e-10
Q1G391	388	F-box protein At4g00893 O	no	no	0.729	0.631	0.249	3e-10
Q9LXZ3	367	F-box protein At3g56470 O	no	no	0.717	0.656	0.227	2e-09

>sp|Q9FVS1|FBK23_ARATH F-box/kelch-repeat protein At1g57790 OS=Arabidopsis thaliana GN=At1g57790 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 149/343 (43%), Gaps = 39/343 (11%)

Query: 19  DLPLTIINLIVSRLYVVYQIRFRAVCKRW--RSVDIQYRDKFTWLMGY--NSHSCYLYDP 74
           DLPL +++ +++ L +   +R   VCK W   +V ++  DK  WLM +    ++   YDP
Sbjct: 15  DLPLELLSSVMTFLEIKDNVRASVVCKSWFEAAVSVRVIDKSPWLMYFPETKNTYDFYDP 74

Query: 75  CHKQRFTVFISDKNRTTLLGARPLDSKNGWVLFEGEK------------NIINLPVWREF 122
            + +++T+ +      +L+G     SK+GW+L   E             +++ LP    F
Sbjct: 75  SNCKKYTMELP----KSLVGFIVRYSKDGWLLMSQEDSSHFVLFNPFTMDVVALPFLHLF 130

Query: 123 SIAK-ATFSATPVSPDCVIFVIWVGVMEISCISICRPGDTTWTELRFQDNYRYV--KNMV 179
           +  +   FS+ P S +CV+F I         I    PG T WT ++ +  +  V   N+V
Sbjct: 131 TYYQLVGFSSAPTSSECVVFTIKDYDPGHVTIRTWSPGQTMWTSMQVESQFLDVDHNNVV 190

Query: 180 RADGFLYCSFFSLDAIVAFNVASQNWEILPYPPSIL------FMYKYLTEYDGSLLILAK 233
            ++G  YC     + +  F+ + + W +L  PP            K++  Y G +L++  
Sbjct: 191 FSNGVFYC-LNQRNHVAVFDPSLRTWNVLDVPPPRCPDDKSWNEGKFMVGYKGDILVIRT 249

Query: 234 VVNSSGYRVFTLNRSQMDWFEIECLDDRALFMG-ASCLWWVPVEKGCAFANIMHWFGPYS 292
             N     VF L+ ++  W E + L    +F+   SC     V+ G    ++  +F    
Sbjct: 250 YENKDPL-VFKLDLTRGIWEEKDTLGSLTIFVSRKSCESRTYVKDGMLRNSV--YFPELC 306

Query: 293 YIRDQWSEFIRKPVESDSSKVAPRIRGYEYWKEEDTTQIWIQP 335
           Y   Q   +       D  +   R    ++ K+  +  IWI+P
Sbjct: 307 YNEKQSVVY-----SFDEGRYHLREHDLDWGKQLSSDNIWIEP 344

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIA2|FB49_ARATH F-box protein At1g49360 OS=Arabidopsis thaliana GN=At1g49360 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 149/339 (43%), Gaps = 60/339 (17%)

Query: 20  LPLTIINLIVSRLYVVYQIRFRAVCKRWRSV--DIQYRDKFTWLMGYNSH-----SCYLY 72
           LP  ++ LI+SRL     IR   VCK W  +   ++ + +  WL+ +++      S   +
Sbjct: 111 LPSDLVRLILSRLSFKDNIRSSTVCKAWGDIAASVRVKSRRCWLLYHDAFQDKGVSYGFF 170

Query: 73  DPCHKQRFTVFISDKNRTTLLGARP-LDSKNGWVLFEGEKNI--------------INLP 117
           DP  K++      + N   L  +   L SK+GW+L     ++              I+LP
Sbjct: 171 DPVEKKK----TKEMNLPELSKSSGILYSKDGWLLMNDSLSLIADMYFFNPFTRERIDLP 226

Query: 118 VWR--EFSIAKATFSATPVSPDCVIFVIWVGVMEISC-----ISICRPGDTTWTELRFQD 170
             R  E       FS  P    C++F    G+  IS      IS  RPG TTW    F +
Sbjct: 227 RNRIMESVHTNFAFSCAPTKKSCLVF----GINNISSSVAIKISTWRPGATTWLHEDFPN 282

Query: 171 ----NYRYVKNMVRADGFLYCSFFSLDAIVAFNVASQNWEILPYPPSILF--MYKYLTEY 224
                +R + N++ +DG  Y +  S  A+  F+  ++ W +LP  P  +     +++TEY
Sbjct: 283 LFPSYFRRLGNILYSDGLFYTA--SETALGVFDPTARTWNVLPVQPIPMAPRSIRWMTEY 340

Query: 225 DGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLDDRALFMG-ASCLWWVPVEKGCAFAN 283
           +G + ++    +S    V+ LNR +  W + E LD  ++F+   SC+    +    + +N
Sbjct: 341 EGHIFLVD--ASSLEPMVYRLNRLESVWEKKETLDGSSIFLSDGSCVMTYGLTG--SMSN 396

Query: 284 IMHWFGPYSYIRDQWSEFIRKPVESDSSKVAPRIRGYEY 322
           I+++          WS FI +   + S     R   Y+Y
Sbjct: 397 ILYF----------WSRFINERRSTKSPCPFSRNHPYKY 425

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSA5|FBK62_ARATH F-box/kelch-repeat protein At3g18720 OS=Arabidopsis thaliana GN=At3g18720 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 123/304 (40%), Gaps = 53/304 (17%)

Query: 3   GGIKEKKQKLERRS-RSDLPLTIINLIVSRLYVVYQIRFRAVCKRW--RSVDIQYRDKFT 59
           GG K+KK  + R      +P  ++  I+SRL +   I    VCK W   +V ++      
Sbjct: 34  GGPKKKKNCVNRGLWDKQIPTDLLQEILSRLGLKANIHASLVCKTWLKEAVSVRKFQSRP 93

Query: 60  WLM-------GYNSHSCYLYDP----CHKQRFTVFISDKNRTTLLGARPLDSKNGWVL-- 106
           WL        G       L++P     H  +F      +N+          +K+GW+L  
Sbjct: 94  WLFYPQSQRGGPKEGDYVLFNPSRSQTHHLKFPELTGYRNKLAC-------AKDGWLLVV 146

Query: 107 ------------FEGEKNIINLPVWREFSIAKA-TFSATPVSPDCVI--FVIWVGVMEIS 151
                       F GE+  I LP   + S     TFSA P S  C +  F     +  + 
Sbjct: 147 KDNPDVVFFLNPFTGER--ICLPQVPQNSTRDCLTFSAAPTSTSCCVISFTPQSFLYAVV 204

Query: 152 CISICRPGDTTWTELRFQDNYRY---VKNMVRADGFLYCSFFSLDAIVAFNVASQNWEIL 208
            +   RPG++ WT   F D  RY   +   + ++G  YC   +   +  F+ + + W +L
Sbjct: 205 KVDTWRPGESVWTTHHF-DQKRYGEVINRCIFSNGMFYC-LSTSGRLSVFDPSRETWNVL 262

Query: 209 PYPPSILFMYK-------YLTEYDGSLLIL-AKVVNSSGYRVFTLNRSQMDWFEIECLDD 260
           P  P   F  K       ++TE++G + ++  + VN+     F LN     W E++  + 
Sbjct: 263 PVKPCRAFRRKIMLVRQVFMTEHEGDIFVVTTRRVNNRKLLAFKLNLQGNVWEEMKVPNG 322

Query: 261 RALF 264
             +F
Sbjct: 323 LTVF 326

Arabidopsis thaliana (taxid: 3702)

>sp|Q1G391|FB217_ARATH F-box protein At4g00893 OS=Arabidopsis thaliana GN=At4g00893 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 116/281 (41%), Gaps = 36/281 (12%)

Query: 5   IKEKKQKLERRSRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDIQYR--DKFTWLM 62
            ++  +K+   S +DLP ++I  I+  L +   IR  A CK W    +  R  DK  WLM
Sbjct: 33  FQDSSKKIMNPSFADLPSSLIEEIMLLLVLKDNIRASAACKSWYEAGVSVRVVDKHPWLM 92

Query: 63  GYNSHSCY--LYDPCHKQRFTVFISDKNRTTL-------LGARPLDSKNGWVLFEGEKNI 113
            +          DP H +  T+ + +   +T+       L  R   S + +      ++I
Sbjct: 93  CFPKRGNLFEFRDPLHWKLHTLDLPELAESTVCYSRFGWLLMRKASSNDVFFFNPFSRDI 152

Query: 114 INLPVWREFSIAKATFSATPVSPDCVIFVIWVGVMEIS--CISICRPGDTTWTELRFQDN 171
           I+LP+  E    +  FS  P S DCV+  I     E++   +S C PG T W    F   
Sbjct: 153 ISLPMC-ELDFQQIAFSCPPTSDDCVLLAIKFVPGEVNRVTVSTCNPGATKWITNDFPTF 211

Query: 172 YRYV---KNMVRADGFLYCSFFSLDAIVAFNVASQNWEIL-------PYPPSILFMY--- 218
            R      N+V      YC F +   + +F  + + W  +       PY     +M+   
Sbjct: 212 LRLFYMQSNLVYRRDRFYC-FNAEGTLYSFEPSYREWSYICADKLRCPYVHENQYMWCGK 270

Query: 219 -KYLTEYDGSLLILAKVVNSSG--YRVFT-----LNRSQMD 251
             +L E  G L ++    N     Y++F+     L+R+ +D
Sbjct: 271 AVFLVEKKGELFVMFTCSNEKPMVYKLFSMKWKELSRTTLD 311

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXZ3|FB204_ARATH F-box protein At3g56470 OS=Arabidopsis thaliana GN=At3g56470 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 116/272 (42%), Gaps = 31/272 (11%)

Query: 19  DLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDIQYRDKFT--WLMGYNS--HSCYLYDP 74
           +LP  ++ L++SRL +   IR  AVCK W    +  R   T  WL+ ++    S  LYDP
Sbjct: 31  NLPCDLLQLVISRLPLKDNIRASAVCKTWHEACVSLRVIHTSPWLIYFSKTDDSYELYDP 90

Query: 75  CHKQRFTVFISDKNRTTLLGARPLDSKNGWVLFEG------------EKNIINLP-VWRE 121
             ++   +   +     L G R   SK+GW+L                ++ + +P +W  
Sbjct: 91  SMQKNCNLHFPE-----LSGFRVCYSKDGWLLMYNPNSYQLLFFNPFTRDCVPMPTLWMA 145

Query: 122 FSIAKATFSATPVSPDCVIF----VIWVGVMEISCISICRPGDTTWTELRFQDNYRYVKN 177
           +   +  FS  P S  C++F    V W  +   +  +  +   T+  + R Q N+   + 
Sbjct: 146 YD-QRMAFSCAPTSTSCLLFTVTSVTWNYITIKTYFANAKEWKTSVFKNRLQRNFNTFEQ 204

Query: 178 MVRADGFLYCSFFSLDAIVAFNVASQNWEILPYPPSILFMYK--YLTEYDGSLLILAKVV 235
           +V ++G  YC   +   +  F+ +   W +LP  P         ++TE+ G + ++  + 
Sbjct: 205 IVFSNGVFYC-LTNTGCLALFDPSLNYWNVLPGRPPKRPGSNGCFMTEHQGEIFLIY-MY 262

Query: 236 NSSGYRVFTLNRSQMDWFEIECLDDRALFMGA 267
                 V  L+ +  +W E + L    ++  A
Sbjct: 263 RHMNPTVLKLDLTSFEWAERKTLGGLTIYASA 294

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
359806246	376	uncharacterized protein LOC100809651 [Gl	0.943	0.843	0.267	1e-24
356572568	376	PREDICTED: F-box/kelch-repeat protein At	0.928	0.829	0.268	2e-23
255636866	376	unknown [Glycine max]	0.928	0.829	0.268	6e-23
356548441	376	PREDICTED: F-box/kelch-repeat protein At	0.943	0.843	0.256	9e-23
356505380	377	PREDICTED: F-box/kelch-repeat protein At	0.738	0.657	0.292	1e-22
388513169	376	unknown [Medicago truncatula]	0.738	0.659	0.271	4e-21
255578937	376	transcription regulation, putative [Rici	0.943	0.843	0.253	2e-20
224140101	344	predicted protein [Populus trichocarpa]	0.898	0.877	0.247	4e-19
225440866	376	PREDICTED: F-box/kelch-repeat protein At	0.928	0.829	0.272	1e-18
147834369	404	hypothetical protein VITISV_038350 [Viti	0.764	0.636	0.296	1e-17

>gi|359806246|ref|NP_001241212.1| uncharacterized protein LOC100809651 [Glycine max] gi|255641457|gb|ACU21004.1| unknown [Glycine max]

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 167/363 (46%), Gaps = 46/363 (12%)

Query: 3   GGIKEKKQKLERRSRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSV--DIQYRDKFTW 60
             ++ + + LE ++ SDLP  ++ LI+SRL +   +R   VCKRW SV   +   ++  W
Sbjct: 22  ASVEVENEYLELQTWSDLPTELLELILSRLSLDDNVRASVVCKRWHSVATSVCVVNQSPW 81

Query: 61  LMGYNSHSCY--LYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLFEGEKN------ 112
           LM +     +   YDP H++ +++ + +     L G+R   +K+GW+L    +       
Sbjct: 82  LMYFPKFGDWYEFYDPAHRKTYSIELPE-----LRGSRVCYTKDGWLLLYRPRTHRVFFF 136

Query: 113 ------IINLPVWREFSIAKATFSATPVSPDCVIFVIWVGVMEISCISICRPGDTTWTEL 166
                 II LP + E S     FS  P SPDCV+F +      +  IS C PG T WT L
Sbjct: 137 NPFTMEIIKLPRF-EMSYQIVAFSCAPTSPDCVLFTVKHVSPTVVAISTCYPGATEWTTL 195

Query: 167 RFQDNYRYVKN----MVRADGFLYCSFFSLDA-IVAFNVASQNWEILPYPPSIL------ 215
            +Q+   +V +    +V  +G  YC   SL   +  FN + + W +L  PP         
Sbjct: 196 SYQNRLPFVSSIWNKLVFCNGLFYC--LSLTGWLGVFNSSERTWSVLSVPPPKCPENFFA 253

Query: 216 ---FMYKYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWW 272
              +  K++TE++G ++++    +S    +F L++  M+W E+  LD   LF       +
Sbjct: 254 KNWWKGKFMTEHEGDIIVIY-TCSSENPIIFKLDQMLMEWEEMTTLDGVTLFAS-----F 307

Query: 273 VPVEKGCAFANIMHWFGPYSYIRDQWSEFIRKPVESDSSKVAPRIRGYEYWKEEDTTQIW 332
           +          IM     +S +R      I      D  +  PR + +++ +++    IW
Sbjct: 308 LSSHARIDLPGIMRNSVYFSKVRFYGKRCIS--FSLDDCRYYPRKQWHDWGEQDPFENIW 365

Query: 333 IQP 335
           I+P
Sbjct: 366 IEP 368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572568|ref|XP_003554440.1| PREDICTED: F-box/kelch-repeat protein At1g57790-like [Glycine max]

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 162/358 (45%), Gaps = 46/358 (12%)

Query: 8   KKQKLERRSRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSV--DIQYRDKFTWLMGYN 65
           K + LE +S +DLP  ++  I+SRL +   IR  AVC+RW SV  D++  ++  WLM + 
Sbjct: 27  KSENLEMQSWADLPAELLESILSRLILADNIRASAVCRRWHSVASDVRVVNQSPWLMYFP 86

Query: 66  SHS-CY-LYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLF------------EGEK 111
               CY  YDP  ++  T  + + N     G+R   +K+GW+L                +
Sbjct: 87  KFGDCYEFYDPVQRKTHTFELPELN-----GSRVCYTKDGWLLLYRPRTHRVFFFNPFTR 141

Query: 112 NIINLPVWREFSIAKATFSATPVSPDCVIFVIWVGVMEISCISICRPGDTTWTELRFQDN 171
            +I LP + E +     FS  P SP CV+F +      +  IS C PG T WT + +Q+ 
Sbjct: 142 ELIKLPRF-EMTYQIVAFSCAPTSPGCVLFTVKHVSPTVVAISTCYPGATEWTTVNYQNR 200

Query: 172 YRYVKN----MVRADGFLYCSFFSLDA-IVAFNVASQNWEILPYPPSIL---------FM 217
             +V +    +V  +G  YC   SL   +  F+     W +L  PP            + 
Sbjct: 201 LPFVSSIWNKLVFCNGLFYC--LSLTGWLGVFDPVECTWSVLAVPPPKCPENFFAKNWWK 258

Query: 218 YKYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEK 277
            K++TE++G +L++    + +   +F L+++ M W E+  LD   LF       ++    
Sbjct: 259 GKFMTEHEGDILVIYTCCSENPI-IFKLDQTLMKWEEMTTLDGVTLFAS-----FLSSHS 312

Query: 278 GCAFANIMHWFGPYSYIRDQWSEFIRKPVESDSSKVAPRIRGYEYWKEEDTTQIWIQP 335
                 IM     +S +R      I      D  +  PR + +++ +++    IWI+P
Sbjct: 313 RTDLIGIMRNSVYFSKVRFYGKRCIS--FSLDDYRYYPRKQCHDWGEQDPFENIWIEP 368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636866|gb|ACU18766.1| unknown [Glycine max]

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 161/358 (44%), Gaps = 46/358 (12%)

Query: 8   KKQKLERRSRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSV--DIQYRDKFTWLMGYN 65
           K + LE +S +DLP  ++  I+SRL +   IR  AVC+RW SV  D++  ++  WLM + 
Sbjct: 27  KSENLEMQSWADLPAELLESILSRLILADNIRASAVCRRWHSVASDVRVVNQSPWLMYFP 86

Query: 66  SHS-CY-LYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLF------------EGEK 111
               CY  YDP  ++  T  + + N     G+R   +K+GW+L                +
Sbjct: 87  KFGDCYEFYDPVQRKTHTFELPELN-----GSRVCYTKDGWLLLYRPRTHRVFFFNPFTR 141

Query: 112 NIINLPVWREFSIAKATFSATPVSPDCVIFVIWVGVMEISCISICRPGDTTWTELRFQDN 171
            +I LP + E       FS  P SP CV+F +      +  IS C PG T WT + +Q+ 
Sbjct: 142 ELIKLPRF-EMIYQIVAFSCAPTSPGCVLFTVKHVSPTVVAISTCYPGATEWTTVNYQNR 200

Query: 172 YRYVKN----MVRADGFLYCSFFSLDA-IVAFNVASQNWEILPYPPSIL---------FM 217
             +V +    +V  +G  YC   SL   +  F+     W +L  PP            + 
Sbjct: 201 LPFVSSIWNKLVFCNGLFYC--LSLTGWLGVFDPVECTWSVLAVPPPKCPENFFAKNWWK 258

Query: 218 YKYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEK 277
            K++TE++G +L++    + +   +F L+++ M W E+  LD   LF       ++    
Sbjct: 259 GKFMTEHEGDILVIYTCCSENPI-IFKLDQTLMKWEEMTTLDGVTLFAS-----FLSSHS 312

Query: 278 GCAFANIMHWFGPYSYIRDQWSEFIRKPVESDSSKVAPRIRGYEYWKEEDTTQIWIQP 335
                 IM     +S +R      I      D  +  PR + +++ +++    IWI+P
Sbjct: 313 RTDLIGIMRNSVYFSKVRFYGKRCIS--FSLDDYRYYPRKQCHDWGEQDPFENIWIEP 368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548441|ref|XP_003542610.1| PREDICTED: F-box/kelch-repeat protein At1g57790-like [Glycine max]

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 167/363 (46%), Gaps = 46/363 (12%)

Query: 3   GGIKEKKQKLERRSRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSV--DIQYRDKFTW 60
             ++ + + LE ++ SDLP  ++ LI+SRL +   +R   VCKRW SV   +   ++  W
Sbjct: 22  AAVEVENENLELQTWSDLPTELLELILSRLSLDDNVRASVVCKRWHSVATSVCVVNQSPW 81

Query: 61  LMGYNSHSCY--LYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLF----------- 107
           LM +     +   YDP H++ +++ + +     L G+R   +K+GW+L            
Sbjct: 82  LMYFPKFGDWYEFYDPVHRKTYSIELPE-----LSGSRVCYTKDGWLLLYRPRTHRVFFF 136

Query: 108 -EGEKNIINLPVWREFSIAKATFSATPVSPDCVIFVIWVGVMEISCISICRPGDTTWTEL 166
               + II LP + E S     FS  P S DCV+F +      +  IS C PG T WT +
Sbjct: 137 NPFTQEIIKLPRF-EMSYQIVAFSCAPTSSDCVLFTVKHVSPTVVAISTCYPGATEWTTV 195

Query: 167 RFQDNYRYVKN----MVRADGFLYCSFFSLDA-IVAFNVASQNWEILPYPPSIL------ 215
            +Q+   +V +    +V  +G  YC   SL   +  F+ + + W +L  PP         
Sbjct: 196 SYQNRLPFVSSIWNKLVFCNGLFYC--LSLTGWLGVFDSSERTWSVLSVPPPKCPENFFA 253

Query: 216 ---FMYKYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWW 272
              +  K++TE++G ++++    N +   +F L+ + ++W E+  LD   LF       +
Sbjct: 254 KNWWKGKFMTEHEGDIIVIYTCSNENPI-IFKLDLTLLEWEEMTTLDGVTLFAS-----F 307

Query: 273 VPVEKGCAFANIMHWFGPYSYIRDQWSEFIRKPVESDSSKVAPRIRGYEYWKEEDTTQIW 332
           +          IM     +S +R      I   +  D  +  PR + +++ +++    IW
Sbjct: 308 LSSHARTDLHGIMRNSVFFSKVRFYGKRCISFSL--DGYRYYPRKQWHDWGEQDPFENIW 365

Query: 333 IQP 335
           I+P
Sbjct: 366 IEP 368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505380|ref|XP_003521469.1| PREDICTED: F-box/kelch-repeat protein At1g57790-like [Glycine max]

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 136/287 (47%), Gaps = 39/287 (13%)

Query: 8   KKQKLERRSRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSV--DIQYRDKFTWLMGYN 65
           K + LE +S +DLP  ++  I+SRL +V  IR  +VCKRW SV  D++  ++  WLM + 
Sbjct: 28  KTENLELQSWADLPAELLESILSRLILVDNIRASSVCKRWHSVASDVRVVNQSPWLMYFP 87

Query: 66  SHS-CY-LYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLF------------EGEK 111
               CY  YDP   +  T  + + N     G+R   +K+GW+L                +
Sbjct: 88  KFGDCYEFYDPVQHKTLTFELPELN-----GSRVCYTKDGWLLLYRPRTHRVFFFNPFTR 142

Query: 112 NIINLPVWREFSIAKATFSATPVSPDCVIFVIWVGVMEISCISICRPGDTTWTELRFQDN 171
            +I LP + E +     FS  P SP CV+F +      +  IS C PG T WT + +Q+ 
Sbjct: 143 ELIKLPRF-EMTYQIVAFSCAPTSPGCVLFTVKHVSPTVVAISTCYPGATEWTTVNYQNR 201

Query: 172 YRYVKN----MVRADGFLYCSFFSLDA-IVAFNVASQNWEILPYPPSIL---------FM 217
             +V +    +V  +G  YC   SL   +  F+     W +L  PP            + 
Sbjct: 202 LPFVSSIWNKLVFCNGLFYC--LSLTGWLGVFDPVECTWSVLAVPPPKCPENFFAKNWWK 259

Query: 218 YKYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLDDRALF 264
            K++ E++G +L++    + +   +F L+++ M W E+  LD   LF
Sbjct: 260 GKFMAEHEGDILVIYTCCSENPI-IFKLDQTLMKWEEMTTLDGVTLF 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513169|gb|AFK44646.1| unknown [Medicago truncatula]

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 135/287 (47%), Gaps = 39/287 (13%)

Query: 8   KKQKLERRSRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDIQYR--DKFTWLMGYN 65
           K   LE ++ +DLP  ++ +I+SRL +   +R  AVCK W  V    R  ++  WLM + 
Sbjct: 27  KNDNLELQTWADLPAELLEMIISRLALEDNVRASAVCKSWNFVANAVRMVNQSPWLMYFP 86

Query: 66  SHSCY--LYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLF------------EGEK 111
               +   YDP  ++ +++   + N     G+R   +K+GW+L                +
Sbjct: 87  KFGQWYEFYDPVQRKTYSIEFPELN-----GSRVCYTKDGWLLLYRPRTDRVFFFNPFTR 141

Query: 112 NIINLPVWREFSIAKATFSATPVSPDCVIFVIWVGVMEISCISICRPGDTTWTELRFQDN 171
             I +P + E +     FS  P SPDCV+F +      I  IS C PG T W  + +Q+ 
Sbjct: 142 ETIKMPRF-EMTYQIVAFSCAPTSPDCVLFTVKHVSPTIVAISTCHPGATEWVTVNYQNR 200

Query: 172 YRYVKN----MVRADGFLYCSFFSLDA-IVAFNVASQNWEILPYPPSIL---------FM 217
             +V +    +V  +G  YC   SL   +  F+ + + W +L  PP            + 
Sbjct: 201 LPFVSSIWNKLVFCNGLFYC--LSLTGWLGVFDPSERTWSVLSVPPPKCPENFFAKNWWK 258

Query: 218 YKYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLDDRALF 264
            K++TE +G ++++    +S    +F L+++ M+W E++ LD   LF
Sbjct: 259 GKFMTEQEGDVIVMY-TCSSENPIIFKLDQASMEWEELKTLDGATLF 304

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578937|ref|XP_002530321.1| transcription regulation, putative [Ricinus communis] gi|223530125|gb|EEF32037.1| transcription regulation, putative [Ricinus communis]

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 158/363 (43%), Gaps = 46/363 (12%)

Query: 3   GGIKEKKQKLERRSRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDIQYR--DKFTW 60
             I   K  LE ++ SDLP+ ++ LI   L +   I    VCKRW +  I  R  +K  W
Sbjct: 22  ATINNIKDNLELQTWSDLPIELLELIFCHLTLEDNIHASVVCKRWHTAAISVRVVNKSPW 81

Query: 61  LMGYNSHSCY--LYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLF----------- 107
           LM +  +      YDP  ++ +++ + +     L  +R   +K+GW+L            
Sbjct: 82  LMYFPKYGNLYEFYDPAQRKTYSLELPE-----LYWSRICYTKDGWLLLYRPITHRVFFF 136

Query: 108 -EGEKNIINLPVWREFSIAKATFSATPVSPDCVIFVIWVGVMEISCISICRPGDTTWTEL 166
               K +I LP + E +     FS++P +  CV+F +      I  IS C PG T W  +
Sbjct: 137 NPFTKKMIKLPRF-ELTYQIVAFSSSPTNASCVVFTVKHISPTIVAISTCHPGATEWVTV 195

Query: 167 RFQDNYRYVKN----MVRADGFLYCSFFSLDA-IVAFNVASQNWEILPYPPSIL------ 215
            +Q+   +V +    +V   G  YC   SL   +  F+   + W +L  PP         
Sbjct: 196 NYQNRLPFVSSIWNKIVFCSGLFYC--LSLTGWLGVFDPVERTWNVLVVPPPKCPENFFA 253

Query: 216 ---FMYKYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWW 272
              +  K+++E++G +L++     S    +F LN+S M W E++ LD   LF       +
Sbjct: 254 KNWWKGKFMSEHNGDILVIYTCC-SENPIIFKLNKSNMTWEEMKTLDGVTLFAS-----F 307

Query: 273 VPVEKGCAFANIMHWFGPYSYIRDQWSEFIRKPVESDSSKVAPRIRGYEYWKEEDTTQIW 332
           +          IM     +S +R      I   +  D  +  PR + +++ +++    IW
Sbjct: 308 LSSHSRTDLPGIMRNSIYFSKVRFFGKRCISYSL--DDCRYYPRKQCHDWGEQDPFENIW 365

Query: 333 IQP 335
           I+P
Sbjct: 366 IEP 368

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140101|ref|XP_002323425.1| predicted protein [Populus trichocarpa] gi|222868055|gb|EEF05186.1| predicted protein [Populus trichocarpa]

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 153/348 (43%), Gaps = 46/348 (13%)

Query: 18  SDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDIQYR--DKFTWLMGYNSHSCY--LYD 73
           SDLP+ ++ LI  RL +   IR    CKRW +  I  R  +   WLM +         YD
Sbjct: 5   SDLPIELLELIFCRLSLEDNIRSSIACKRWNTAAISVRVVNHSPWLMYFPKFGNMYEFYD 64

Query: 74  PCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLF------------EGEKNIINLPVWRE 121
           P  ++ +++ + +     L G+R   +K+GW+L                + ++ LP + E
Sbjct: 65  PAQRKTYSLELPE-----LYGSRVCYTKDGWLLLYRPRTNRVFFFNPFSREVVKLPRF-E 118

Query: 122 FSIAKATFSATPVSPDCVIFVIWVGVMEISCISICRPGDTTWTELRFQDNYRYVKNM--- 178
            +     FS  P S  CV+F +      I  IS C PG T W  + +Q+   +V ++   
Sbjct: 119 LTYQIVAFSCAPTSNTCVVFTVRHISPTIVAISTCHPGATEWVTVNYQNRLPFVSSIWNK 178

Query: 179 -VRADGFLYCSFFSLDA-IVAFNVASQNWEILPYPPSIL---------FMYKYLTEYDGS 227
            V  +GF YC   SL   +  F+     W +L  PP            +  K+++E++G 
Sbjct: 179 IVFCNGFFYC--LSLTGWLGVFDPLEHTWSVLAVPPPKCPENFFAKNWWKGKFMSEHNGD 236

Query: 228 LLILAKVVNSSGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKGCAFANIMHW 287
           +L++    + +   +F L++S+M W E++ LD   LF       ++          +M  
Sbjct: 237 ILVIYTCCSENPI-IFKLDQSKMFWREMKTLDGMTLFAS-----FLSSHSRSDLPGMMRN 290

Query: 288 FGPYSYIRDQWSEFIRKPVESDSSKVAPRIRGYEYWKEEDTTQIWIQP 335
              +S +R      I   +  D  +  PR + +++ +++    IWI+P
Sbjct: 291 SVYFSKVRFFGKRCISYSL--DDCRYYPRKQCHDWGEQDPFENIWIEP 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440866|ref|XP_002276543.1| PREDICTED: F-box/kelch-repeat protein At1g57790-like [Vitis vinifera]

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 159/360 (44%), Gaps = 48/360 (13%)

Query: 7   EKKQKLERRSRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDIQYR--DKFTWLMGY 64
           EK   LE +S SDLP  ++ LI+S L +   IR  AVCKRW SV I  R  ++  W+M +
Sbjct: 26  EKAVTLELQSWSDLPAELLELIMSCLTLEENIRASAVCKRWYSVAIATRVVNQTPWIMFF 85

Query: 65  N--SHSCYLYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLF------------EGE 110
                +   YDP  ++ + + + +     L G+R   + +GW+L                
Sbjct: 86  PKVGDTYEFYDPLQRETYCIDLPE-----LCGSRVCSTIDGWLLLYRPRTHRVFFFNPFT 140

Query: 111 KNIINLPVWREFSIAKATFSATPVSPDCVIFVIWVGVMEISCISICRPGDTTWTELRFQD 170
           +  I LP + E S    + SA P S  C++F I      +  IS C  G T WT +  Q+
Sbjct: 141 RESIKLPRY-EMSYQIVSVSAAPTSASCIVFTIKHISPTVVAISTCHAGATEWTTVNHQN 199

Query: 171 NYRYVKN----MVRADGFLYCSFFSLDA-IVAFNVASQNWEIL----PYPPSILFMY--- 218
              +V +    +V  +G  YC   SL   +  F+   ++W++L    P  P   F     
Sbjct: 200 RLPFVSSIWNKLVYCNGLFYC--LSLTGWLGVFDPDDRSWDVLSIHPPKCPENFFTKNWW 257

Query: 219 --KYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVE 276
             K++ E+ G L ++    ++    VF L+R+++ W E++ LD   +F       ++   
Sbjct: 258 KGKFMLEHQGELFVIY-TCSTENPIVFKLDRNKLVWEEMKTLDGMTIFAS-----FLSSH 311

Query: 277 KGCAFANIMHWFGPYSYIRDQWSEFIRKPVESDSSKVAPRIRGYEYWKEEDTTQ-IWIQP 335
                  IM     +S +R      I   +  D  +  PR + Y  W E+D  + IWI P
Sbjct: 312 GRNDLPGIMRNNVFFSKVRFYGKRCISYSL--DDCRYYPR-KQYHDWGEQDPFESIWIVP 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834369|emb|CAN69847.1| hypothetical protein VITISV_038350 [Vitis vinifera]

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 130/304 (42%), Gaps = 47/304 (15%)

Query: 11  KLERRSRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWR---SVDIQYRDKFTWLMGY--- 64
           ++E R  SDLP  +I  I+ RLYV  ++R R VCK W    +  I+  DK  W M Y   
Sbjct: 22  EIETRPWSDLPQDLIVSIMERLYVADRVRLRGVCKDWHLQPNRGIKAIDKLPWTMEYKWR 81

Query: 65  NSHS------CYLYDPCHKQRFTVFISDK----NRTTLLGARPLDSKNGWVLF------E 108
           N  S      C LY+P H  R   ++ +K     R          S+  WVLF      +
Sbjct: 82  NPKSISFWSVCKLYEPLHHNRRLSYMVEKGRMRGRKNFAKGEVRASRYSWVLFYKDDYWQ 141

Query: 109 GE--------KNIINLPVWREFSIAKATFSATPVSPDCVIFVIWVGVMEISCISICRPGD 160
           G+        K +I LP +       ATFS  P SP C +FV +        I+I    D
Sbjct: 142 GKFFFFNPFTKEVIFLPCFESPVSEFATFSLAPTSPHCFVFVPYERNYNEISINIYSHAD 201

Query: 161 TTWTELRFQDNYR---YVKNMVRADGFLYCSFFSLDAIVAFNVASQNWEI-------LPY 210
            TW       N      +K +   +G  YC F S   + AFN+A Q   +       + +
Sbjct: 202 KTWKTHDLVANDHPLGTLKAVGYMEGTFYCHFSSFH-LAAFNIADQELSLVMTTCPAMDH 260

Query: 211 PPSILFMY---KYLTEYDGSLLILAKVVNSSGYR---VFTLNRSQMDWFEIECLDDRALF 264
               LF Y    YL E +G LL++    + S +    V  L+ S+ +W  +  L  RA+F
Sbjct: 261 LDDSLFNYFSRSYLLECEGDLLLVYLFESLSCWHQLYVLKLDWSRNEWVRVSRLGGRAMF 320

Query: 265 MGAS 268
           +G +
Sbjct: 321 LGET 324

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
TAIR|locus:2009430	352	AT1G57790 "AT1G57790" [Arabido	0.904	0.863	0.241	6.2e-17
TAIR|locus:2010172	481	AT1G49360 "AT1G49360" [Arabido	0.586	0.409	0.273	6.4e-14
TAIR|locus:504955409	234	AT4G10695 "AT4G10695" [Arabido	0.494	0.709	0.3	6.2e-13
TAIR|locus:2102519	367	AT3G56470 "AT3G56470" [Arabido	0.755	0.692	0.224	1.2e-11
TAIR|locus:4010713853	388	AT4G00893 [Arabidopsis thalian	0.595	0.515	0.286	7.2e-11
TAIR|locus:2139207	317	AT4G10660 "AT4G10660" [Arabido	0.419	0.444	0.307	1.7e-09
TAIR|locus:2094004	380	AT3G18720 "AT3G18720" [Arabido	0.458	0.405	0.267	3e-09
TAIR|locus:4515103379	138	AT4G12382 "AT4G12382" [Arabido	0.273	0.666	0.287	4.1e-05
TAIR|locus:2139064	300	AT4G12370 "AT4G12370" [Arabido	0.491	0.55	0.263	0.0001
TAIR|locus:504956069	367	AT2G44735 "AT2G44735" [Arabido	0.327	0.299	0.267	0.00019

TAIR|locus:2009430 AT1G57790 "AT1G57790" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 6.2e-17, P = 6.2e-17
 Identities = 83/343 (24%), Positives = 150/343 (43%)

Query:    19 DLPLTIINLIVSRLYVVYQIRFRAVCKRW--RSVDIQYRDKFTWLMGY-NSHSCY-LYDP 74
             DLPL +++ +++ L +   +R   VCK W   +V ++  DK  WLM +  + + Y  YDP
Sbjct:    15 DLPLELLSSVMTFLEIKDNVRASVVCKSWFEAAVSVRVIDKSPWLMYFPETKNTYDFYDP 74

Query:    75 CHKQRFTVFISDKNRTTLLGARPLDSKNGWVLFEGEKN------------IINLPVWREF 122
              + +++T+ +      +L+G     SK+GW+L   E +            ++ LP    F
Sbjct:    75 SNCKKYTMELPK----SLVGFIVRYSKDGWLLMSQEDSSHFVLFNPFTMDVVALPFLHLF 130

Query:   123 SIAKAT-FSATPVSPDCVIFVIWVGVMEISCISICRPGDTTWTELRFQDNYRYV--KNMV 179
             +  +   FS+ P S +CV+F I         I    PG T WT ++ +  +  V   N+V
Sbjct:   131 TYYQLVGFSSAPTSSECVVFTIKDYDPGHVTIRTWSPGQTMWTSMQVESQFLDVDHNNVV 190

Query:   180 RADGFLYCSFFSLDAIVAFNVASQNWEILPYPP------SILFMYKYLTEYDGSLLILAK 233
              ++G  YC     + +  F+ + + W +L  PP            K++  Y G +L++  
Sbjct:   191 FSNGVFYC-LNQRNHVAVFDPSLRTWNVLDVPPPRCPDDKSWNEGKFMVGYKGDILVIRT 249

Query:   234 VVNSSGYRVFTLNRSQMDWFEIECLDDRALFMGA-SCLWWVPVEKGCAFANIMHWFGPYS 292
               N     VF L+ ++  W E + L    +F+   SC     V+ G    ++  +F    
Sbjct:   250 YENKDPL-VFKLDLTRGIWEEKDTLGSLTIFVSRKSCESRTYVKDGMLRNSV--YFPELC 306

Query:   293 YIRDQWSEFIRKPVESDSSKVAPRIRGYEYWKEEDTTQIWIQP 335
             Y   Q   +       D  +   R    ++ K+  +  IWI+P
Sbjct:   307 YNEKQSVVY-----SFDEGRYHLREHDLDWGKQLSSDNIWIEP 344

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010172 AT1G49360 "AT1G49360" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 6.4e-14, Sum P(2) = 6.4e-14
 Identities = 62/227 (27%), Positives = 105/227 (46%)

Query:   129 FSATPVSPDCVIFVIWVGVMEISC-----ISICRPGDTTWTELRFQD---NY-RYVKNMV 179
             FS  P    C++F    G+  IS      IS  RPG TTW    F +   +Y R + N++
Sbjct:   240 FSCAPTKKSCLVF----GINNISSSVAIKISTWRPGATTWLHEDFPNLFPSYFRRLGNIL 295

Query:   180 RADGFLYCSFFSLDAIVAFNVASQNWEILPYPPSILF--MYKYLTEYDGSLLILAKVVNS 237
              +DG  Y +  S  A+  F+  ++ W +LP  P  +     +++TEY+G + ++    +S
Sbjct:   296 YSDGLFYTA--SETALGVFDPTARTWNVLPVQPIPMAPRSIRWMTEYEGHIFLVD--ASS 351

Query:   238 SGYRVFTLNRSQMDWFEIECLDDRALFMG-ASCLWWVPVEKGCAFANIMHWFGPYSYIRD 296
                 V+ LNR +  W + E LD  ++F+   SC+    +  G + +NI++++  +   R 
Sbjct:   352 LEPMVYRLNRLESVWEKKETLDGSSIFLSDGSCVMTYGLT-G-SMSNILYFWSRFINERR 409

Query:   297 QWSE---FIRK-PVE----SDSSKVAPRIRGYEYWKEEDTTQIWIQP 335
                    F R  P +    S SS   P    +EY        +WI+P
Sbjct:   410 STKSPCPFSRNHPYKYSLYSRSSCEDPEGYYFEYLTWGQKVGVWIEP 456

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504955409 AT4G10695 "AT4G10695" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 6.2e-13, P = 6.2e-13
 Identities = 60/200 (30%), Positives = 88/200 (44%)

Query:    38 IRFRAVCKRWRSV--DIQYRDKFTWLMGYNSHS--CYLYDPCHKQRFTVFISDKNRTTLL 93
             IR  AVC+ WR     ++  +K  W++ +  H     L+DP  ++ +T+     N   L+
Sbjct:    10 IRASAVCRAWRKAAESVRVVEKHPWVISFPRHYGVTILFDPLGRKSYTL-----NLPELV 64

Query:    94 GARPLDSKNGWVLFEGE------------KNIINLPVWREFSIAKATFSATPVSPDCVIF 141
             G     SK+GW+L                + +INLP   E S     FS+ P S  C + 
Sbjct:    65 GTDVCYSKDGWLLMRRSSLVDMFFLNPYTRELINLPKC-ELSFQAVAFSSVPTSGTCAVI 123

Query:   142 VIWVGVMEISCISICRPGDTTWTELRFQDNYRYV----KNMVRADGFLYCSFFSLDAIVA 197
              +      I  ISIC PG T W    F  ++ +      N+V A+G  YC F S   +V 
Sbjct:   124 ALRPFTRFIIRISICFPGATEWITQDFSCSHGFEPYMHSNLVYANGHFYC-FSSGGVLVD 182

Query:   198 FNVAS-----QNWE--ILPY 210
             F++AS     Q W   I PY
Sbjct:   183 FDLASRTMSHQAWNEHICPY 202

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2102519 AT3G56470 "AT3G56470" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 64/285 (22%), Positives = 124/285 (43%)

Query:     6 KEKKQKLERRSRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDIQYRDKFT--WLMG 63
             +  K+K + ++  +LP  ++ L++SRL +   IR  AVCK W    +  R   T  WL+ 
Sbjct:    18 QSSKEKEKYQTFINLPCDLLQLVISRLPLKDNIRASAVCKTWHEACVSLRVIHTSPWLIY 77

Query:    64 YNS--HSCYLYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLFEGE----------- 110
             ++    S  LYDP  ++   +   +     L G R   SK+GW+L               
Sbjct:    78 FSKTDDSYELYDPSMQKNCNLHFPE-----LSGFRVCYSKDGWLLMYNPNSYQLLFFNPF 132

Query:   111 -KNIINLP-VWREFSIAKATFSATPVSPDCVIFVI----WVGVMEISCISICRPGDTTWT 164
              ++ + +P +W  +   +  FS  P S  C++F +    W  +   +  +  +   T+  
Sbjct:   133 TRDCVPMPTLWMAYD-QRMAFSCAPTSTSCLLFTVTSVTWNYITIKTYFANAKEWKTSVF 191

Query:   165 ELRFQDNYRYVKNMVRADGFLYCSFFSLDAIVAFNVASQNWEILP-YPPSILFMYK-YLT 222
             + R Q N+   + +V ++G  YC   +   +  F+ +   W +LP  PP        ++T
Sbjct:   192 KNRLQRNFNTFEQIVFSNGVFYC-LTNTGCLALFDPSLNYWNVLPGRPPKRPGSNGCFMT 250

Query:   223 EYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLDDRALFMGA 267
             E+ G + ++  +       V  L+ +  +W E + L    ++  A
Sbjct:   251 EHQGEIFLIY-MYRHMNPTVLKLDLTSFEWAERKTLGGLTIYASA 294

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4010713853 AT4G00893 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 7.2e-11, P = 7.2e-11
 Identities = 63/220 (28%), Positives = 102/220 (46%)

Query:     6 KEKKQKLERRSRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDIQYR--DKFTWLMG 63
             ++  +K+   S +DLP ++I  I+  L +   IR  A CK W    +  R  DK  WLM 
Sbjct:    34 QDSSKKIMNPSFADLPSSLIEEIMLLLVLKDNIRASAACKSWYEAGVSVRVVDKHPWLMC 93

Query:    64 YNSH-SCYLY-DPCHKQRFTVFISDKNRTTLLGAR------PLDSKNGWVLFEG-EKNII 114
             +    + + + DP H +  T+ + +   +T+  +R         S N    F    ++II
Sbjct:    94 FPKRGNLFEFRDPLHWKLHTLDLPELAESTVCYSRFGWLLMRKASSNDVFFFNPFSRDII 153

Query:   115 NLPVWREFSIAKATFSATPVSPDCVIFVI-WV-GVMEISCISICRPGDTTWTELRFQDNY 172
             +LP+  E    +  FS  P S DCV+  I +V G +    +S C PG T W    F    
Sbjct:   154 SLPMC-ELDFQQIAFSCPPTSDDCVLLAIKFVPGEVNRVTVSTCNPGATKWITNDFPTFL 212

Query:   173 R--YVK-NMV-RADGFLYCSFFSLDAIVAFNVASQNWEIL 208
             R  Y++ N+V R D F YC F +   + +F  + + W  +
Sbjct:   213 RLFYMQSNLVYRRDRF-YC-FNAEGTLYSFEPSYREWSYI 250

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2139207 AT4G10660 "AT4G10660" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 51/166 (30%), Positives = 78/166 (46%)

Query:    56 DKFTWLMGYNSHS--CYLYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLFEGE--- 110
             +K  W++ + +H    +L+DP  ++R+T+     N   L+G     SK+GW+L       
Sbjct:    16 EKHPWVITFPNHEDLTFLFDPLERKRYTL-----NLPELVGTDVCYSKDGWLLMRRSSLV 70

Query:   111 ---------KNIINLPVWREFSIAKATFSATPVSPDCVIFVIWVGVMEISCISICRPGDT 161
                      + +INLP   E +     FS+ P S  CV+  +      I  ISIC PG T
Sbjct:    71 DMFFFNPYTRELINLPKC-ELAFQAIAFSSAPTSGTCVVLALRPFTRYIIRISICYPGAT 129

Query:   162 TWTELRFQDNYR---YV-KNMVRADGFLYCSFFSLDAIVAFNVASQ 203
              W    F  + R   Y+  N+V A+   YC F S   +V F+VAS+
Sbjct:   130 EWITQEFSCSLRFDPYMHSNLVYANDHFYC-FSSGGVLVDFDVASR 174

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2094004 AT3G18720 "AT3G18720" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
 Identities = 46/172 (26%), Positives = 76/172 (44%)

Query:   107 FEGEKNIINLPVWREFSIAKA-TFSATPVSPDCVI--FVIWVGVMEISCISICRPGDTTW 163
             F GE+  I LP   + S     TFSA P S  C +  F     +  +  +   RPG++ W
Sbjct:   159 FTGER--ICLPQVPQNSTRDCLTFSAAPTSTSCCVISFTPQSFLYAVVKVDTWRPGESVW 216

Query:   164 TELRFQDNYRY---VKNMVRADGFLYCSFFSLDAIVAFNVASQNWEILPYPPSILFMYK- 219
             T   F D  RY   +   + ++G  YC   S   +  F+ + + W +LP  P   F  K 
Sbjct:   217 TTHHF-DQKRYGEVINRCIFSNGMFYCLSTS-GRLSVFDPSRETWNVLPVKPCRAFRRKI 274

Query:   220 ------YLTEYDGSLLILA-KVVNSSGYRVFTLNRSQMDWFEIECLDDRALF 264
                   ++TE++G + ++  + VN+     F LN     W E++  +   +F
Sbjct:   275 MLVRQVFMTEHEGDIFVVTTRRVNNRKLLAFKLNLQGNVWEEMKVPNGLTVF 326

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515103379 AT4G12382 "AT4G12382" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 29/101 (28%), Positives = 53/101 (52%)

Query:    10 QKLERRSRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDIQYR--DKFTWLMGYNSH 67
             +K+   S +DLP ++I +I+S L +   IR  A CK W  V +  R  +K  WL+ +   
Sbjct:     3 KKIMNPSFADLPSSLIEVIMSHLALKNNIRASAACKSWYEVGVSVRVVEKHPWLICFPKR 62

Query:    68 -SCYLY-DPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVL 106
              + + + DP H + +T+ + +   +T+  +R      GW+L
Sbjct:    63 GNLFEFRDPLHWKLYTLGLPELAESTVCYSR-----FGWLL 98

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2139064 AT4G12370 "AT4G12370" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
 Identities = 52/197 (26%), Positives = 85/197 (43%)

Query:    71 LYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLFEG----EKNIINLPVWREF-SIA 125
             LYDP H++ +T+ + +  ++T+  +R     +GW+L       E    N P  RE  ++ 
Sbjct:    12 LYDPLHQKMYTLNLPELAKSTVCYSR-----DGWLLMRKTISREMFFFN-PFTRELINVP 65

Query:   126 KAT-------FSATPVSPDCVIFVIWVGVMEISCISICRPGDTTWTELRFQDNYRYVKNM 178
             K T       FS  P S  CV+         I+  S C P  T W     Q + R+    
Sbjct:    66 KCTLSYDAIAFSCAPTSGTCVLLAFKHVSYRITTTSTCHPKATEWVTEDLQFHRRFRSET 125

Query:   179 VRADGFLYCS--FFSLD---AIVAFNVASQNWE-----ILPYPP-SILFMYKYLTEYDGS 227
             +     +Y    F+ LD   ++  F+ +S+ W+     +LP P  S  F Y+Y  E    
Sbjct:   126 LNHSNVVYAKRRFYCLDGQGSLYYFDPSSRRWDFSYTYLLPCPYISDRFSYQY--ERKKK 183

Query:   228 LLILAKVVNSSGYRVFT 244
              + LA V     +++FT
Sbjct:   184 RIFLA-VRKGVFFKIFT 199

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504956069 AT2G44735 "AT2G44735" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
 Identities = 34/127 (26%), Positives = 59/127 (46%)

Query:   129 FSATPVSPDCVIFVIWVGVMEISCISI--CRPGDTTWTELRFQDN--YRYVKNMVRADGF 184
             FSA P SP C++ + +  +     + I   RPG+T WT   F++   +RY    V ++G 
Sbjct:   134 FSAAPTSPSCMV-ISYTQLRSCGSVLIDTWRPGETEWTTHCFENQLPFRYWSKCVFSNGM 192

Query:   185 LYCSFFSLDAIVAFNVASQNWEILPYPPSILFM---YKY------LTEYDGSL--LILAK 233
              +C       +  F+ +   W ILP  P   F    + Y      +TE++G +  +I+ +
Sbjct:   193 FFC-LSECGYLGVFDPSKATWNILPVKPCPAFYQFEFDYTHNPVFMTEHEGDIFDIIMFR 251

Query:   234 VVNSSGY 240
             + N   Y
Sbjct:   252 LCNCRSY 258


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.139   0.462    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      336       336   0.00092  116 3  11 22  0.46    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  633 (67 KB)
  Total size of DFA:  286 KB (2146 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.68u 0.12s 26.80t   Elapsed:  00:00:02
  Total cpu time:  26.68u 0.12s 26.80t   Elapsed:  00:00:02
  Start:  Mon May 20 23:06:07 2013   End:  Mon May 20 23:06:09 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00160726 hypothetical protein (376 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	336
pfam00646	48	pfam00646, F-box, F-box domain	0.002
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	0.002

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 18 SDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSV 50
           DLP  ++  I+SRL     +R   V KRWRS+
Sbjct: 4  LDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSL 36

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 35.1 bits (82), Expect = 0.002
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 20 LPLTIINLIVSRLYVVYQIRFRAVCKRWRSV 50
          LP  I+  I+S+L     +R R V ++WRS+
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSL 31

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	336
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	100.0
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.51
PF03478	54	DUF295: Protein of unknown function (DUF295); Inte	99.02
PHA02713	557	hypothetical protein; Provisional	98.77
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.73
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	98.72
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.48
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.35
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.31
PHA02790	480	Kelch-like protein; Provisional	98.27
PHA02713	557	hypothetical protein; Provisional	98.26
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.21
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	98.1
PHA03098	534	kelch-like protein; Provisional	97.97
PLN02153	341	epithiospecifier protein	97.8
PHA03098	534	kelch-like protein; Provisional	97.78
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	97.76
PLN02153	341	epithiospecifier protein	97.65
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	97.6
PHA02790	480	Kelch-like protein; Provisional	97.6
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	97.58
PLN02193	470	nitrile-specifier protein	97.47
PLN02193	470	nitrile-specifier protein	97.34
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	97.01
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.85
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	96.08
KOG1230	521	consensus Protein containing repeated kelch motifs	95.42
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	95.25
KOG1230	521	consensus Protein containing repeated kelch motifs	94.05
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	92.65
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	92.59
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	91.99
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	91.85
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	91.32
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	91.12
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	90.63
PF13964	50	Kelch_6: Kelch motif	90.52
PF13964	50	Kelch_6: Kelch motif	89.63
KOG2997	366	consensus F-box protein FBX9 [General function pre	89.19
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	87.6
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	87.47
KOG4693	392	consensus Uncharacterized conserved protein, conta	87.43
KOG2502	355	consensus Tub family proteins [General function pr	85.73
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	83.44
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	82.4
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	81.79
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	81.62
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	81.54

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=100.00  E-value=1.3e-37  Score=280.29  Aligned_cols=267  Identities=16%  Similarity=0.194  Sum_probs=180.3

Q ss_pred             cCCCCCCcHHHHHHHHHcC-Ccchhccccccchhhhhcccc-----CCCCcceEEEEe---CCeEEEEeC---------C
Q 038767           14 RRSRSDLPLTIINLIVSRL-YVVYQIRFRAVCKRWRSVDIQ-----YRDKFTWLMGYN---SHSCYLYDP---------C   75 (336)
Q Consensus        14 ~~~Ws~LP~dll~~Il~rL-p~~dl~rfr~VCk~Wr~~~~~-----~~~~~P~ll~~~---~~~~~~~~p---------~   75 (336)
                      +.+|++||+|||+.|..|| ...|++|||+||++||+++..     +.++.||+++..   .......++         .
T Consensus         1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls   80 (373)
T PLN03215          1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGKKNPFRTRPLILFNPINPSETLTDDRSYISRPGAFLS   80 (373)
T ss_pred             CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccccCCcccccccccCcccCCCCccccccccccccceee
Confidence            3679999999999999999 579999999999999999974     123447776442   110000111         0


Q ss_pred             CCcEEEEeccCCCccccCCCeeEEecCCeEEEec--------------cCceeeCCCCCc----cce----eEEEe-ecC
Q 038767           76 HKQRFTVFISDKNRTTLLGARPLDSKNGWVLFEG--------------EKNIINLPVWRE----FSI----AKATF-SAT  132 (336)
Q Consensus        76 ~~~~~~~~~~~~P~~~~~~~~~~~s~~GwL~~~~--------------T~~~~~LP~~~~----~~~----~~~~~-s~~  132 (336)
                      ....+++++   |         .++++|||+..+              |+..+.+|+...    +.+    +...+ ...
T Consensus        81 ~~~~~r~~~---~---------~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~  148 (373)
T PLN03215         81 RAAFFRVTL---S---------SSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWA  148 (373)
T ss_pred             eeEEEEeec---C---------CCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEecc
Confidence            012233332   2         135688888765              455555554321    100    00000 000


Q ss_pred             ------C------------CC-CCeEEEEEEccCCceEEEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCCC
Q 038767          133 ------P------------VS-PDCVIFVIWVGVMEISCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSLD  193 (336)
Q Consensus       133 ------p------------~~-~~~~v~~~~~~~~~~~~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~g  193 (336)
                            +            .. .+++++++.. +|++   ++|+  +++|+.++..  ...+.|+++++|+||+++.. |
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~-~g~l---~~w~--~~~Wt~l~~~--~~~~~DIi~~kGkfYAvD~~-G  219 (373)
T PLN03215        149 KRRETRPGYQRSALVKVKEGDNHRDGVLGIGR-DGKI---NYWD--GNVLKALKQM--GYHFSDIIVHKGQTYALDSI-G  219 (373)
T ss_pred             cccccccceeEEEEEEeecCCCcceEEEEEee-cCcE---eeec--CCeeeEccCC--CceeeEEEEECCEEEEEcCC-C
Confidence                  0            01 1344555543 4544   6676  6899998742  24599999999999999988 9


Q ss_pred             cEEEEEecCCceeeecCCC---Cc--c-cceeeEEEeCCcEEEEEEEec---------------CcceEEEEeecCCCce
Q 038767          194 AIVAFNVASQNWEILPYPP---SI--L-FMYKYLTEYDGSLLILAKVVN---------------SSGYRVFTLNRSQMDW  252 (336)
Q Consensus       194 ~i~~~Dl~~~~~~~i~~p~---p~--~-~~~~~Lve~~G~LllV~~~~~---------------~~~~~V~~ld~~~~~W  252 (336)
                      .++++|.+.+ .+.+..+.   +.  + ....||||++|+|+||.+...               ...|+|||+|.+..+|
T Consensus       220 ~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~W  298 (373)
T PLN03215        220 IVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKW  298 (373)
T ss_pred             eEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcE
Confidence            9999995422 12221110   11  1 245899999999999999631               1479999999999999


Q ss_pred             EEecccCCeEEEeeCCceEEeecC--CC----eEEEEEeccCCcEEEecCcccccccCccccCCCcccccc
Q 038767          253 FEIECLDDRALFMGASCLWWVPVE--KG----CAFANIMHWFGPYSYIRDQWSEFIRKPVESDSSKVAPRI  317 (336)
Q Consensus       253 ~~v~~Lg~~alFlg~~~s~~~~a~--~G----~IYf~~~~~~~~~vy~~~~~~~~~~~~~~~~~g~~~~~~  317 (336)
                      ++|++|||+|||+|.++++++++.  +|    ||||++  +....||+             |+||+..+..
T Consensus       299 veV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtd--d~~~~v~~-------------~~dg~~~~~~  354 (373)
T PLN03215        299 MEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTE--DTMPKVFK-------------LDNGNGSSIE  354 (373)
T ss_pred             EEecccCCeEEEEECCccEEEecCCCCCccCCEEEEEC--CCcceEEE-------------CCCCCccceE
Confidence            999999999999999999999884  34    999998  45667999             9999977664

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.51  E-value=1.4e-12  Score=113.42  Aligned_cols=158  Identities=17%  Similarity=0.286  Sum_probs=108.9

Q ss_pred             CeEEEec--cCceeeCCCCCcc---c-eeEEEeecCCCCCCeEEEEEEccC--CceEEEEEEecCCCCeeeeeeeCCccc
Q 038767          103 GWVLFEG--EKNIINLPVWREF---S-IAKATFSATPVSPDCVIFVIWVGV--MEISCISICRPGDTTWTELRFQDNYRY  174 (336)
Q Consensus       103 GwL~~~~--T~~~~~LP~~~~~---~-~~~~~~s~~p~~~~~~v~~~~~~~--~~~~~v~~~~~g~~~W~~~~~~~~~~~  174 (336)
                      ..++++|  ||+.+.||+....   . ....+|..+|.+.++.|+.+....  .....+.++..++++|+.+...+....
T Consensus        14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~   93 (230)
T TIGR01640        14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP   93 (230)
T ss_pred             CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence            4556666  9999999876531   1 112455556666788887764321  122456888999999999874322111


Q ss_pred             -cccEEEeCCeEEEEeeCCC-----cEEEEEecCCcee-eecCCCCcc--cceeeEEEeCCcEEEEEEEecCcceEEEEe
Q 038767          175 -VKNMVRADGFLYCSFFSLD-----AIVAFNVASQNWE-ILPYPPSIL--FMYKYLTEYDGSLLILAKVVNSSGYRVFTL  245 (336)
Q Consensus       175 -~~d~v~~~G~~Y~l~~~~g-----~i~~~Dl~~~~~~-~i~~p~p~~--~~~~~Lve~~G~LllV~~~~~~~~~~V~~l  245 (336)
                       ....++.||.+|++.....     .|++||+++|+|+ .++.|....  .....|++.+|+|.++........++||.|
T Consensus        94 ~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl  173 (230)
T TIGR01640        94 LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLWVL  173 (230)
T ss_pred             ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCCcEEEEEE
Confidence             3348899999999986411     6999999999999 476553221  234579999999999987433356999999


Q ss_pred             ec-CCCceEEecccCC
Q 038767          246 NR-SQMDWFEIECLDD  260 (336)
Q Consensus       246 d~-~~~~W~~v~~Lg~  260 (336)
                      ++ +..+|+|..+++.
T Consensus       174 ~d~~~~~W~k~~~i~~  189 (230)
T TIGR01640       174 NDAGKQEWSKLFTVPI  189 (230)
T ss_pred             CCCCCCceeEEEEEcC
Confidence            75 4567999988874

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF03478 DUF295: Protein of unknown function (DUF295); InterPro: IPR005174 This family of proteins are found in plants

Probab=99.02  E-value=4.5e-10  Score=73.94  Aligned_cols=43  Identities=33%  Similarity=0.553  Sum_probs=37.5

Q ss_pred             eEEecccCCeEEEeeCCceEEeecC--CC----eEEEEEe----ccCCcEEEe
Q 038767          252 WFEIECLDDRALFMGASCLWWVPVE--KG----CAFANIM----HWFGPYSYI  294 (336)
Q Consensus       252 W~~v~~Lg~~alFlg~~~s~~~~a~--~G----~IYf~~~----~~~~~~vy~  294 (336)
                      |+++++|||+|||||.++++++++.  +|    ||||++.    ..++.+|||
T Consensus         1 W~~v~~lGd~alFlg~~~~~~~~a~~~~g~~~n~IYf~~~~~~~~~~~~~Vy~   53 (54)
T PF03478_consen    1 WVEVKSLGDRALFLGRNCSFSVSASDFPGLKGNCIYFLDDSSDESDRDIGVYN   53 (54)
T ss_pred             CcCccccCCEEEEEeCCccEEEECCCCCCccCCEEEEecCCCCCCCCCEEEEe
Confidence            9999999999999999999999885  44    9999996    346678998

The function of the proteins is unknown.

>PHA02713 hypothetical protein; Provisional

Probab=98.77  E-value=1.2e-06  Score=85.80  Aligned_cols=147  Identities=12%  Similarity=0.091  Sum_probs=100.1

Q ss_pred             EEEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCC-----------------------CcEEEEEecCCceee
Q 038767          151 SCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSL-----------------------DAIVAFNVASQNWEI  207 (336)
Q Consensus       151 ~~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~-----------------------g~i~~~Dl~~~~~~~  207 (336)
                      ..+..|.+.++.|+.+...+.-.....++.++|++|+++...                       ..+.+||+.+++|+.
T Consensus       367 ~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~  446 (557)
T PHA02713        367 RTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET  446 (557)
T ss_pred             ceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee
Confidence            457889999999998775542223445678899999997421                       248899999999998


Q ss_pred             ecCCCCcccceeeEEEeCCcEEEEEEEecCc--ceEEEEeecCC-CceEEecccCCeEEEeeCCceEEeecCCCeEEEEE
Q 038767          208 LPYPPSILFMYKYLTEYDGSLLILAKVVNSS--GYRVFTLNRSQ-MDWFEIECLDDRALFMGASCLWWVPVEKGCAFANI  284 (336)
Q Consensus       208 i~~p~p~~~~~~~Lve~~G~LllV~~~~~~~--~~~V~~ld~~~-~~W~~v~~Lg~~alFlg~~~s~~~~a~~G~IYf~~  284 (336)
                      +.. ++..-....++..+|+|+++.......  .-.|.+.|.++ .+|+.+.+|.-.-.      ...+.+..|+||...
T Consensus       447 v~~-m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~------~~~~~~~~~~iyv~G  519 (557)
T PHA02713        447 LPN-FWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS------ALHTILHDNTIMMLH  519 (557)
T ss_pred             cCC-CCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc------cceeEEECCEEEEEe
Confidence            753 332222345788899999998642221  12467779998 79999998874221      122222345999987


Q ss_pred             eccC--CcEEEecCcccccccCccccCCCcccccc
Q 038767          285 MHWF--GPYSYIRDQWSEFIRKPVESDSSKVAPRI  317 (336)
Q Consensus       285 ~~~~--~~~vy~~~~~~~~~~~~~~~~~g~~~~~~  317 (336)
                      ++..  ..-.||             .++++|+.+.
T Consensus       520 g~~~~~~~e~yd-------------~~~~~W~~~~  541 (557)
T PHA02713        520 CYESYMLQDTFN-------------VYTYEWNHIC  541 (557)
T ss_pred             eecceeehhhcC-------------cccccccchh
Confidence            5433  234888             8889998877

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.73  E-value=5e-09  Score=66.95  Aligned_cols=36  Identities=36%  Similarity=0.514  Sum_probs=32.6

Q ss_pred             CCCCcHHHHHHHHHcCCcchhccccccchhhhhccc
Q 038767           17 RSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDI   52 (336)
Q Consensus        17 Ws~LP~dll~~Il~rLp~~dl~rfr~VCk~Wr~~~~   52 (336)
                      |..||+|++..|+..|+..|+++++.|||.|+.++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~   36 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN   36 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence            789999999999999999999999999999999984

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=98.72  E-value=2.6e-07  Score=72.74  Aligned_cols=105  Identities=19%  Similarity=0.310  Sum_probs=72.2

Q ss_pred             EEeCCeEEEEeeC----CCcEEEEEecCCceeeecCCC-C-cccceeeEEEeCCcEEEEEEEecC--cceEEEEeec-CC
Q 038767          179 VRADGFLYCSFFS----LDAIVAFNVASQNWEILPYPP-S-ILFMYKYLTEYDGSLLILAKVVNS--SGYRVFTLNR-SQ  249 (336)
Q Consensus       179 v~~~G~~Y~l~~~----~g~i~~~Dl~~~~~~~i~~p~-p-~~~~~~~Lve~~G~LllV~~~~~~--~~~~V~~ld~-~~  249 (336)
                      ++.||.+|+++..    ...|++||+.+|+|+.+..|. + .......|++.+|+|.++......  ..++||.|+. ++
T Consensus         2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k   81 (129)
T PF08268_consen    2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK   81 (129)
T ss_pred             EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence            6889999999764    258999999999999998761 1 224567899999999999885332  3699999965 56


Q ss_pred             CceEEecc-cCCeEEEeeCCceEEeec--CCCeEEEE
Q 038767          250 MDWFEIEC-LDDRALFMGASCLWWVPV--EKGCAFAN  283 (336)
Q Consensus       250 ~~W~~v~~-Lg~~alFlg~~~s~~~~a--~~G~IYf~  283 (336)
                      .+|++... ++....=++.++.+.+..  ..|.|.|.
T Consensus        82 ~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~  118 (129)
T PF08268_consen   82 QEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA  118 (129)
T ss_pred             ceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence            78998854 443222122223333322  24666665

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.48  E-value=2.5e-08  Score=63.98  Aligned_cols=37  Identities=41%  Similarity=0.474  Sum_probs=31.9

Q ss_pred             CCCCCcHHHHHHHHHcCCcchhccccccchhhhhccc
Q 038767           16 SRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDI   52 (336)
Q Consensus        16 ~Ws~LP~dll~~Il~rLp~~dl~rfr~VCk~Wr~~~~   52 (336)
                      .|++||+|++.+|+.+|+..|+++++.|||+|++++.
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~   38 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVD   38 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHT
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHc
Confidence            3778999999999999999999999999999999985

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.35  E-value=1.6e-07  Score=57.93  Aligned_cols=33  Identities=39%  Similarity=0.567  Sum_probs=31.8

Q ss_pred             CcHHHHHHHHHcCCcchhccccccchhhhhccc
Q 038767           20 LPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDI   52 (336)
Q Consensus        20 LP~dll~~Il~rLp~~dl~rfr~VCk~Wr~~~~   52 (336)
                      ||+|++..|+.+|+..|+.+++.|||+|+.++.
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~   33 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID   33 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            799999999999999999999999999999986

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.31  E-value=0.00012  Score=71.87  Aligned_cols=203  Identities=12%  Similarity=0.058  Sum_probs=121.3

Q ss_pred             eEEEEeCCCCcEEEEeccCCCccccCCCeeEEecCCeEEEe----------------c--cCceeeCCCCCccceeE--E
Q 038767           68 SCYLYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLFE----------------G--EKNIINLPVWREFSIAK--A  127 (336)
Q Consensus        68 ~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~s~~GwL~~~----------------~--T~~~~~LP~~~~~~~~~--~  127 (336)
                      ....|||..+.|..+.-+..|..    ...++.-+|-|+++                |  +++|..+|++...+...  +
T Consensus       302 ~ve~yd~~~~~w~~~a~m~~~r~----~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~  377 (571)
T KOG4441|consen  302 SVECYDPKTNEWSSLAPMPSPRC----RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA  377 (571)
T ss_pred             eeEEecCCcCcEeecCCCCcccc----cccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE
Confidence            45789999988876543221211    11122223333332                2  67888888887532211  1


Q ss_pred             EeecCCCCCCeEEEEEEccCCceEEEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCC------CcEEEEEec
Q 038767          128 TFSATPVSPDCVIFVIWVGVMEISCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSL------DAIVAFNVA  201 (336)
Q Consensus       128 ~~s~~p~~~~~~v~~~~~~~~~~~~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~------g~i~~~Dl~  201 (336)
                      ++.    ..-+++-+.+. ...+..+..|.+..+.|+.+..+........++.++|++|+++...      ..+..||+.
T Consensus       378 ~l~----g~iYavGG~dg-~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~  452 (571)
T KOG4441|consen  378 VLD----GKLYAVGGFDG-EKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPE  452 (571)
T ss_pred             EEC----CEEEEEecccc-ccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCC
Confidence            110    01122333331 2344567899999999998876543334566788999999997521      368999999


Q ss_pred             CCceeeecCCCCcccceeeEEEeCCcEEEEEEEecC-cceEEEEeecCCCceEEecccCCeEEEeeCCceEEeecCCCeE
Q 038767          202 SQNWEILPYPPSILFMYKYLTEYDGSLLILAKVVNS-SGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKGCA  280 (336)
Q Consensus       202 ~~~~~~i~~p~p~~~~~~~Lve~~G~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~a~~G~I  280 (336)
                      ++.|+.++. ++..-...-++..+|.|+.|...... ..-.|.+.|.++.+|..+..|..     ++... .+.+..|.|
T Consensus       453 t~~W~~~~~-M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~-----~rs~~-g~~~~~~~l  525 (571)
T KOG4441|consen  453 TNTWTLIAP-MNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS-----PRSAV-GVVVLGGKL  525 (571)
T ss_pred             CCceeecCC-cccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc-----ccccc-cEEEECCEE
Confidence            999999853 22211223367789999999986432 22347777999999999976662     22211 111222378


Q ss_pred             EEEEec
Q 038767          281 FANIMH  286 (336)
Q Consensus       281 Yf~~~~  286 (336)
                      |...++
T Consensus       526 y~vGG~  531 (571)
T KOG4441|consen  526 YAVGGF  531 (571)
T ss_pred             EEEecc
Confidence            887643

>PHA02790 Kelch-like protein; Provisional

Probab=98.27  E-value=0.0001  Score=71.24  Aligned_cols=175  Identities=14%  Similarity=0.077  Sum_probs=101.0

Q ss_pred             eEEEEeCCCCcEEEEeccCCCccccCCCeeEEecCCeEEEec--------------cCceeeCCCCCccceeEEEeecCC
Q 038767           68 SCYLYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLFEG--------------EKNIINLPVWREFSIAKATFSATP  133 (336)
Q Consensus        68 ~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~s~~GwL~~~~--------------T~~~~~LP~~~~~~~~~~~~s~~p  133 (336)
                      ....|||.+++|..++-+..|...    ....+.+|.|++..              ++++..+|+++..+...++-.   
T Consensus       288 ~v~~Ydp~~~~W~~~~~m~~~r~~----~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~---  360 (480)
T PHA02790        288 NAIAVNYISNNWIPIPPMNSPRLY----ASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS---  360 (480)
T ss_pred             eEEEEECCCCEEEECCCCCchhhc----ceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE---
Confidence            346799999999876543223111    11223466665543              455666666654221100000   


Q ss_pred             CCCCeEEEEEEccCCceEEEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCCCcEEEEEecCCceeeecCCCC
Q 038767          134 VSPDCVIFVIWVGVMEISCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSLDAIVAFNVASQNWEILPYPPS  213 (336)
Q Consensus       134 ~~~~~~v~~~~~~~~~~~~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~g~i~~~Dl~~~~~~~i~~p~p  213 (336)
                       ..+ .+.++-...+....+..|.|.++.|+.+..++.-.....++.++|++|+++   |...+||+.+++|+.+.. +|
T Consensus       361 -~~g-~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~-m~  434 (480)
T PHA02790        361 -INN-VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDD-PI  434 (480)
T ss_pred             -ECC-EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcEeEcCC-CC
Confidence             011 122221111112345678999999998765432122445678999999987   457889999999998853 23


Q ss_pred             cccceeeEEEeCCcEEEEEEEecCc-ceEEEEeecCCCceEEe
Q 038767          214 ILFMYKYLTEYDGSLLILAKVVNSS-GYRVFTLNRSQMDWFEI  255 (336)
Q Consensus       214 ~~~~~~~Lve~~G~LllV~~~~~~~-~~~V~~ld~~~~~W~~v  255 (336)
                      ..-...-++..+|+|+++....... .-.|...|.++.+|.-.
T Consensus       435 ~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~  477 (480)
T PHA02790        435 YPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW  477 (480)
T ss_pred             CCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence            2112335677899999998743221 12355558889999754

>PHA02713 hypothetical protein; Provisional

Probab=98.26  E-value=5.2e-05  Score=74.48  Aligned_cols=105  Identities=13%  Similarity=0.121  Sum_probs=74.6

Q ss_pred             EEEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCC------CcEEEEEecC-CceeeecCCCCcccceeeEEE
Q 038767          151 SCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSL------DAIVAFNVAS-QNWEILPYPPSILFMYKYLTE  223 (336)
Q Consensus       151 ~~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~------g~i~~~Dl~~-~~~~~i~~p~p~~~~~~~Lve  223 (336)
                      ..+..|.|..+.|+.+...+.......++.++|++|+++...      ..+.+||+.+ +.|+.+. ++|.......++.
T Consensus       432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~-~m~~~r~~~~~~~  510 (557)
T PHA02713        432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT-TTESRLSALHTIL  510 (557)
T ss_pred             ceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc-ccCcccccceeEE
Confidence            356789999999998876532233556889999999997421      1467999998 7999875 3343223456778


Q ss_pred             eCCcEEEEEEEecCcceEEEEeecCCCceEEeccc
Q 038767          224 YDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECL  258 (336)
Q Consensus       224 ~~G~LllV~~~~~~~~~~V~~ld~~~~~W~~v~~L  258 (336)
                      .+|+|+++....+...++  ..|..+.+|..+..-
T Consensus       511 ~~~~iyv~Gg~~~~~~~e--~yd~~~~~W~~~~~~  543 (557)
T PHA02713        511 HDNTIMMLHCYESYMLQD--TFNVYTYEWNHICHQ  543 (557)
T ss_pred             ECCEEEEEeeecceeehh--hcCcccccccchhhh
Confidence            899999998853323344  448889999988543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.21  E-value=6.2e-05  Score=73.90  Aligned_cols=107  Identities=12%  Similarity=0.194  Sum_probs=79.9

Q ss_pred             ceEEEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCCC-----cEEEEEecCCceeeecCCCCcccceeeEEE
Q 038767          149 EISCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSLD-----AIVAFNVASQNWEILPYPPSILFMYKYLTE  223 (336)
Q Consensus       149 ~~~~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~g-----~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve  223 (336)
                      ....+..|.|..+.|+.+..+..-+....++..||++|+++...+     .+-+||+.+++|..+. +++..-....++.
T Consensus       442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~-~m~~~rs~~g~~~  520 (571)
T KOG4441|consen  442 CLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA-PMTSPRSAVGVVV  520 (571)
T ss_pred             ccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc-cCccccccccEEE
Confidence            345678899999999998876533445668899999999976422     4889999999999984 2322223456788


Q ss_pred             eCCcEEEEEEEecC---cceEEEEeecCCCceEEeccc
Q 038767          224 YDGSLLILAKVVNS---SGYRVFTLNRSQMDWFEIECL  258 (336)
Q Consensus       224 ~~G~LllV~~~~~~---~~~~V~~ld~~~~~W~~v~~L  258 (336)
                      .+|+|++|......   ..+++|  |.++.+|.+...+
T Consensus       521 ~~~~ly~vGG~~~~~~l~~ve~y--dp~~d~W~~~~~~  556 (571)
T KOG4441|consen  521 LGGKLYAVGGFDGNNNLNTVECY--DPETDTWTEVTEP  556 (571)
T ss_pred             ECCEEEEEecccCccccceeEEc--CCCCCceeeCCCc
Confidence            89999999985332   456666  9999999998763

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=98.10  E-value=2.8e-05  Score=63.82  Aligned_cols=81  Identities=17%  Similarity=0.286  Sum_probs=58.1

Q ss_pred             EEeCCeEEEEeeCC-C----cEEEEEecCCce-eeecCCCCcc--cceeeE-EEeCCcEEEEEEEecCcceEEEEeec--
Q 038767          179 VRADGFLYCSFFSL-D----AIVAFNVASQNW-EILPYPPSIL--FMYKYL-TEYDGSLLILAKVVNSSGYRVFTLNR--  247 (336)
Q Consensus       179 v~~~G~~Y~l~~~~-g----~i~~~Dl~~~~~-~~i~~p~p~~--~~~~~L-ve~~G~LllV~~~~~~~~~~V~~ld~--  247 (336)
                      |+.||.+||++... +    .|++||+++|+| +.++.|....  .....| +..+|+|.++........++||.|++  
T Consensus         2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~~   81 (164)
T PF07734_consen    2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKYG   81 (164)
T ss_pred             EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeeec
Confidence            78999999998642 1    599999999999 6775542211  123445 33467888886544445799999985  


Q ss_pred             -CCCceEEecccC
Q 038767          248 -SQMDWFEIECLD  259 (336)
Q Consensus       248 -~~~~W~~v~~Lg  259 (336)
                       ...+|+|+.+++
T Consensus        82 ~~~~SWtK~~~i~   94 (164)
T PF07734_consen   82 YGKESWTKLFTID   94 (164)
T ss_pred             cCcceEEEEEEEe
Confidence             367899998776

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PHA03098 kelch-like protein; Provisional

Probab=97.97  E-value=0.00046  Score=67.71  Aligned_cols=109  Identities=9%  Similarity=0.106  Sum_probs=73.7

Q ss_pred             EEEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCC--------CcEEEEEecCCceeeecCCCCcccceeeEE
Q 038767          151 SCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSL--------DAIVAFNVASQNWEILPYPPSILFMYKYLT  222 (336)
Q Consensus       151 ~~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~--------g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lv  222 (336)
                      ..+..|.+.+++|+.+...+.-.....++.++|++|+++...        ..+.+||+.+++|+.+... |.......++
T Consensus       406 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~-~~~r~~~~~~  484 (534)
T PHA03098        406 KTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSL-NFPRINASLC  484 (534)
T ss_pred             ceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCC-CcccccceEE
Confidence            356788899999998765432223445778899999997421        2389999999999988532 2211123355


Q ss_pred             EeCCcEEEEEEEecCc-ceEEEEeecCCCceEEecccCC
Q 038767          223 EYDGSLLILAKVVNSS-GYRVFTLNRSQMDWFEIECLDD  260 (336)
Q Consensus       223 e~~G~LllV~~~~~~~-~~~V~~ld~~~~~W~~v~~Lg~  260 (336)
                      ..+|+|+++....... .=.|+..|.++.+|..+..++.
T Consensus       485 ~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~  523 (534)
T PHA03098        485 IFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK  523 (534)
T ss_pred             EECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence            5689999887643221 2356777999999998877553

>PLN02153 epithiospecifier protein

Probab=97.80  E-value=0.0056  Score=56.45  Aligned_cols=109  Identities=18%  Similarity=0.188  Sum_probs=71.5

Q ss_pred             EEEEEEecCCCCeeeeeee-----CCccccccEEEeCCeEEEEeeCC-----------CcEEEEEecCCceeeecCCC--
Q 038767          151 SCISICRPGDTTWTELRFQ-----DNYRYVKNMVRADGFLYCSFFSL-----------DAIVAFNVASQNWEILPYPP--  212 (336)
Q Consensus       151 ~~v~~~~~g~~~W~~~~~~-----~~~~~~~d~v~~~G~~Y~l~~~~-----------g~i~~~Dl~~~~~~~i~~p~--  212 (336)
                      ..+..|.+..+.|+.+...     +.-.....++..++++|++....           ..+.+||+.+++|+.++.+.  
T Consensus       101 ~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~  180 (341)
T PLN02153        101 SDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGEN  180 (341)
T ss_pred             CcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCC
Confidence            3457788999999987643     11112445677899999986421           25789999999999875421  


Q ss_pred             CcccceeeEEEeCCcEEEEEEEe-----cC----cceEEEEeecCCCceEEecccC
Q 038767          213 SILFMYKYLTEYDGSLLILAKVV-----NS----SGYRVFTLNRSQMDWFEIECLD  259 (336)
Q Consensus       213 p~~~~~~~Lve~~G~LllV~~~~-----~~----~~~~V~~ld~~~~~W~~v~~Lg  259 (336)
                      |..-....++..+|+|+++....     .+    ..-.|+.+|.++.+|+++..+|
T Consensus       181 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g  236 (341)
T PLN02153        181 FEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTG  236 (341)
T ss_pred             CCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccC
Confidence            11111223556789999886531     11    1235778899999999998665

>PHA03098 kelch-like protein; Provisional

Probab=97.78  E-value=0.002  Score=63.27  Aligned_cols=146  Identities=13%  Similarity=0.105  Sum_probs=93.6

Q ss_pred             EEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCC------CcEEEEEecCCceeeecCCCCcccceeeEEEeC
Q 038767          152 CISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSL------DAIVAFNVASQNWEILPYPPSILFMYKYLTEYD  225 (336)
Q Consensus       152 ~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~------g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~  225 (336)
                      .+..|.+.++.|+.....+.-.....++.++|++|+++...      ..+..||+.+++|+.+.. .|........+..+
T Consensus       359 ~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~  437 (534)
T PHA03098        359 TVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP-LPISHYGGCAIYHD  437 (534)
T ss_pred             eEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC-CCccccCceEEEEC
Confidence            45778899999998765432222344577899999997521      358999999999998753 23221223356678


Q ss_pred             CcEEEEEEEecCc----ceEEEEeecCCCceEEecccCCeEEEeeCCceEEeecCCCeEEEEEecc-----CCcEEEecC
Q 038767          226 GSLLILAKVVNSS----GYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKGCAFANIMHW-----FGPYSYIRD  296 (336)
Q Consensus       226 G~LllV~~~~~~~----~~~V~~ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~a~~G~IYf~~~~~-----~~~~vy~~~  296 (336)
                      |+|+++.......    .-.++..|.++.+|.++..++..    ..+.+.+  +..|.||...+..     .+..+||  
T Consensus       438 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~----r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd--  509 (534)
T PHA03098        438 GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP----RINASLC--IFNNKIYVVGGDKYEYYINEIEVYD--  509 (534)
T ss_pred             CEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc----cccceEE--EECCEEEEEcCCcCCcccceeEEEe--
Confidence            9999887642211    12378889999999999877521    1111111  1234888876332     2345888  


Q ss_pred             cccccccCccccCCCcccccc
Q 038767          297 QWSEFIRKPVESDSSKVAPRI  317 (336)
Q Consensus       297 ~~~~~~~~~~~~~~g~~~~~~  317 (336)
                                 .++++|+...
T Consensus       510 -----------~~~~~W~~~~  519 (534)
T PHA03098        510 -----------DKTNTWTLFC  519 (534)
T ss_pred             -----------CCCCEEEecC
Confidence                       8888887665

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=97.76  E-value=0.0013  Score=60.14  Aligned_cols=106  Identities=13%  Similarity=0.109  Sum_probs=68.5

Q ss_pred             EEEEEecCCCCe----eeeeeeCCccccccEEEeCCeEEEEeeC-----CCcEEEEEecCCceeeecC-CC-Ccccceee
Q 038767          152 CISICRPGDTTW----TELRFQDNYRYVKNMVRADGFLYCSFFS-----LDAIVAFNVASQNWEILPY-PP-SILFMYKY  220 (336)
Q Consensus       152 ~v~~~~~g~~~W----~~~~~~~~~~~~~d~v~~~G~~Y~l~~~-----~g~i~~~Dl~~~~~~~i~~-p~-p~~~~~~~  220 (336)
                      .+..+...++.|    +.+...+.-.....++.++|++|++...     ...+.+||+.+++|+.+.. |. +.  ....
T Consensus        89 ~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r--~~~~  166 (323)
T TIGR03548        89 SVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR--VQPV  166 (323)
T ss_pred             eEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC--Ccce
Confidence            445566667777    3333222111234567789999999642     1368999999999998853 21 21  2234


Q ss_pred             EEEeCCcEEEEEEEecCcceEEEEeecCCCceEEecccC
Q 038767          221 LTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLD  259 (336)
Q Consensus       221 Lve~~G~LllV~~~~~~~~~~V~~ld~~~~~W~~v~~Lg  259 (336)
                      ++..+|+|+++..........+++.|.++.+|.++..+.
T Consensus       167 ~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~  205 (323)
T TIGR03548       167 CVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPT  205 (323)
T ss_pred             EEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCC
Confidence            466789999887642222345678899999999998763

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02153 epithiospecifier protein

Probab=97.65  E-value=0.016  Score=53.48  Aligned_cols=106  Identities=15%  Similarity=0.203  Sum_probs=71.2

Q ss_pred             EEEEEecCCCCeeeeeeeCC---ccccccEEEeCCeEEEEeeC-------------CCcEEEEEecCCceeeecC----C
Q 038767          152 CISICRPGDTTWTELRFQDN---YRYVKNMVRADGFLYCSFFS-------------LDAIVAFNVASQNWEILPY----P  211 (336)
Q Consensus       152 ~v~~~~~g~~~W~~~~~~~~---~~~~~d~v~~~G~~Y~l~~~-------------~g~i~~~Dl~~~~~~~i~~----p  211 (336)
                      .+..|.+.++.|+.++....   .+....++.++|++|++...             ...+.+||+.+.+|+.+..    |
T Consensus       160 ~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P  239 (341)
T PLN02153        160 TIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKP  239 (341)
T ss_pred             eEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCC
Confidence            45778999999998764321   11233467789999987421             1468999999999998753    2


Q ss_pred             CCcccceeeEEEeCCcEEEEEEEec--------Cc--ceEEEEeecCCCceEEecccC
Q 038767          212 PSILFMYKYLTEYDGSLLILAKVVN--------SS--GYRVFTLNRSQMDWFEIECLD  259 (336)
Q Consensus       212 ~p~~~~~~~Lve~~G~LllV~~~~~--------~~--~~~V~~ld~~~~~W~~v~~Lg  259 (336)
                      .|..  ..-.+..+|+|+++.....        ..  .-.||.+|.++.+|.++...+
T Consensus       240 ~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~  295 (341)
T PLN02153        240 SARS--VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECG  295 (341)
T ss_pred             CCcc--eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCC
Confidence            2322  1224556788888877421        01  127899999999999987543

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=97.60  E-value=0.002  Score=60.22  Aligned_cols=108  Identities=9%  Similarity=0.168  Sum_probs=71.7

Q ss_pred             EEEEEecCCCCeeeeeeeCCcccc-ccEEE-eCCeEEEEeeCC-------------------------------------
Q 038767          152 CISICRPGDTTWTELRFQDNYRYV-KNMVR-ADGFLYCSFFSL-------------------------------------  192 (336)
Q Consensus       152 ~v~~~~~g~~~W~~~~~~~~~~~~-~d~v~-~~G~~Y~l~~~~-------------------------------------  192 (336)
                      .+..|.+..++|+.+......... ...+. .+|++|++....                                     
T Consensus       107 ~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (376)
T PRK14131        107 DVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYF  186 (376)
T ss_pred             cEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcC
Confidence            356788889999998642111111 22333 799999996421                                     


Q ss_pred             --CcEEEEEecCCceeeecCCCCc-ccceeeEEEeCCcEEEEEEEecC----cceEEEEeecCCCceEEecccCC
Q 038767          193 --DAIVAFNVASQNWEILPYPPSI-LFMYKYLTEYDGSLLILAKVVNS----SGYRVFTLNRSQMDWFEIECLDD  260 (336)
Q Consensus       193 --g~i~~~Dl~~~~~~~i~~p~p~-~~~~~~Lve~~G~LllV~~~~~~----~~~~V~~ld~~~~~W~~v~~Lg~  260 (336)
                        ..+..||+.+++|+.+.. .|. .....-++..+++|+++......    ..+.++++|.++.+|.++..|..
T Consensus       187 ~~~~v~~YD~~t~~W~~~~~-~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~  260 (376)
T PRK14131        187 FNKEVLSYDPSTNQWKNAGE-SPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPP  260 (376)
T ss_pred             cCceEEEEECCCCeeeECCc-CCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCC
Confidence              258999999999998753 232 12233466778999999874321    23455667778899999998863

>PHA02790 Kelch-like protein; Provisional

Probab=97.60  E-value=0.0019  Score=62.45  Aligned_cols=106  Identities=9%  Similarity=0.012  Sum_probs=74.1

Q ss_pred             EEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCC--CcEEEEEecCCceeeecCCCCcccceeeEEEeCCcEE
Q 038767          152 CISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSL--DAIVAFNVASQNWEILPYPPSILFMYKYLTEYDGSLL  229 (336)
Q Consensus       152 ~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~--g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~G~Ll  229 (336)
                      .+..|.+..+.|..++..+.-......+..+|++|+++...  ..+..+|+.+++|+.++. +|..-...-.+..+|+|+
T Consensus       288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~-l~~~r~~~~~~~~~g~IY  366 (480)
T PHA02790        288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS-LLKPRCNPAVASINNVIY  366 (480)
T ss_pred             eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCC-CCCCCcccEEEEECCEEE
Confidence            45678899999998876542222445677899999997531  358899998889998753 332222345678899999


Q ss_pred             EEEEEecCcceEEEEeecCCCceEEecccC
Q 038767          230 ILAKVVNSSGYRVFTLNRSQMDWFEIECLD  259 (336)
Q Consensus       230 lV~~~~~~~~~~V~~ld~~~~~W~~v~~Lg  259 (336)
                      ++.... +..-.+...|.++.+|..+..|.
T Consensus       367 viGG~~-~~~~~ve~ydp~~~~W~~~~~m~  395 (480)
T PHA02790        367 VIGGHS-ETDTTTEYLLPNHDQWQFGPSTY  395 (480)
T ss_pred             EecCcC-CCCccEEEEeCCCCEEEeCCCCC
Confidence            998742 22223445588899999998876

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=97.58  E-value=0.003  Score=58.32  Aligned_cols=108  Identities=10%  Similarity=0.226  Sum_probs=71.4

Q ss_pred             EEEEEecCCCCeeeeeeeCCcccc-ccEE-EeCCeEEEEeeCC-------------------------------------
Q 038767          152 CISICRPGDTTWTELRFQDNYRYV-KNMV-RADGFLYCSFFSL-------------------------------------  192 (336)
Q Consensus       152 ~v~~~~~g~~~W~~~~~~~~~~~~-~d~v-~~~G~~Y~l~~~~-------------------------------------  192 (336)
                      .+..|.+..++|+.+......... ...+ .++|++|++....                                     
T Consensus        86 ~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (346)
T TIGR03547        86 DVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYF  165 (346)
T ss_pred             cEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcC
Confidence            457788999999988632111112 2223 6899999996421                                     


Q ss_pred             --CcEEEEEecCCceeeecCCCCc-ccceeeEEEeCCcEEEEEEEecC----cceEEEEeecCCCceEEecccCC
Q 038767          193 --DAIVAFNVASQNWEILPYPPSI-LFMYKYLTEYDGSLLILAKVVNS----SGYRVFTLNRSQMDWFEIECLDD  260 (336)
Q Consensus       193 --g~i~~~Dl~~~~~~~i~~p~p~-~~~~~~Lve~~G~LllV~~~~~~----~~~~V~~ld~~~~~W~~v~~Lg~  260 (336)
                        ..+.+||+.+++|+.+.. +|. .....-++..+|+|+++......    ..+.+|.+|.++.+|.++..|+.
T Consensus       166 ~~~~v~~YDp~t~~W~~~~~-~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~  239 (346)
T TIGR03547       166 WNKNVLSYDPSTNQWRNLGE-NPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPP  239 (346)
T ss_pred             ccceEEEEECCCCceeECcc-CCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCC
Confidence              358899999999998853 232 11223456678999999875321    23445666677789999998863

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02193 nitrile-specifier protein

Probab=97.47  E-value=0.0044  Score=59.79  Aligned_cols=109  Identities=13%  Similarity=0.124  Sum_probs=73.7

Q ss_pred             EEEEEecCCCCeeeeeeeCC---ccccccEEEeCCeEEEEeeCC-----CcEEEEEecCCceeeecCCC--CcccceeeE
Q 038767          152 CISICRPGDTTWTELRFQDN---YRYVKNMVRADGFLYCSFFSL-----DAIVAFNVASQNWEILPYPP--SILFMYKYL  221 (336)
Q Consensus       152 ~v~~~~~g~~~W~~~~~~~~---~~~~~d~v~~~G~~Y~l~~~~-----g~i~~~Dl~~~~~~~i~~p~--p~~~~~~~L  221 (336)
                      .+..+.+..+.|+.+.....   -.....++..++++|++....     ..+.+||+.+++|+.+..+.  |..-...-+
T Consensus       245 dv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~  324 (470)
T PLN02193        245 GFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGL  324 (470)
T ss_pred             cEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEE
Confidence            45778888999998765421   122445677899999996431     35889999999999876431  111112335


Q ss_pred             EEeCCcEEEEEEEecCcceEEEEeecCCCceEEecccCC
Q 038767          222 TEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLDD  260 (336)
Q Consensus       222 ve~~G~LllV~~~~~~~~~~V~~ld~~~~~W~~v~~Lg~  260 (336)
                      +..+|+++++........-.|+.+|.++.+|.++..+|.
T Consensus       325 ~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~  363 (470)
T PLN02193        325 EVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGV  363 (470)
T ss_pred             EEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCC
Confidence            567899998876422222457888999999999987753

>PLN02193 nitrile-specifier protein

Probab=97.34  E-value=0.022  Score=54.95  Aligned_cols=107  Identities=10%  Similarity=0.212  Sum_probs=72.5

Q ss_pred             EEEEEecCCCCeeeeeeeCCc---cccccEEEeCCeEEEEeeCC----CcEEEEEecCCceeeecC----CCCcccceee
Q 038767          152 CISICRPGDTTWTELRFQDNY---RYVKNMVRADGFLYCSFFSL----DAIVAFNVASQNWEILPY----PPSILFMYKY  220 (336)
Q Consensus       152 ~v~~~~~g~~~W~~~~~~~~~---~~~~d~v~~~G~~Y~l~~~~----g~i~~~Dl~~~~~~~i~~----p~p~~~~~~~  220 (336)
                      .+..+.+.+++|+.+......   +....++.++|++|++....    ..+.+||+.+++|+.+..    |.|..  ...
T Consensus       295 ~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~--~~~  372 (470)
T PLN02193        295 TLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERS--VFA  372 (470)
T ss_pred             eEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcc--eeE
Confidence            456788899999987643211   12334667899999986421    479999999999998753    22322  122


Q ss_pred             EEEeCCcEEEEEEEecC--------cce--EEEEeecCCCceEEecccCC
Q 038767          221 LTEYDGSLLILAKVVNS--------SGY--RVFTLNRSQMDWFEIECLDD  260 (336)
Q Consensus       221 Lve~~G~LllV~~~~~~--------~~~--~V~~ld~~~~~W~~v~~Lg~  260 (336)
                      .+..+++|+++......        ..+  .+|.+|.++.+|.++..++.
T Consensus       373 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~  422 (470)
T PLN02193        373 SAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGE  422 (470)
T ss_pred             EEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCC
Confidence            45567888888774210        112  58999999999999987764

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=97.01  E-value=0.022  Score=52.11  Aligned_cols=127  Identities=13%  Similarity=0.067  Sum_probs=76.0

Q ss_pred             CeeeeeeeCCccccccEEEeCCeEEEEeeCC-----CcEEEEEecCCce----eeecCCCCcccceeeEEEeCCcEEEEE
Q 038767          162 TWTELRFQDNYRYVKNMVRADGFLYCSFFSL-----DAIVAFNVASQNW----EILPYPPSILFMYKYLTEYDGSLLILA  232 (336)
Q Consensus       162 ~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~-----g~i~~~Dl~~~~~----~~i~~p~p~~~~~~~Lve~~G~LllV~  232 (336)
                      +|+.+...+.-......+..++++|++....     ..+..||+.++.|    +.+. +.|........+..+|.|+++.
T Consensus        52 ~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~-~lp~~~~~~~~~~~~~~iYv~G  130 (323)
T TIGR03548        52 KWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIG-NLPFTFENGSACYKDGTLYVGG  130 (323)
T ss_pred             eEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC-CCCcCccCceEEEECCEEEEEe
Confidence            6877664432122334566799999997421     3688999988887    3332 2232212234566789999987


Q ss_pred             EEecC-cceEEEEeecCCCceEEecccCCeEEEeeCCceEEeecCCCeEEEEEecc----CCcEEEe
Q 038767          233 KVVNS-SGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKGCAFANIMHW----FGPYSYI  294 (336)
Q Consensus       233 ~~~~~-~~~~V~~ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~a~~G~IYf~~~~~----~~~~vy~  294 (336)
                      ....+ ..-.||++|.++.+|.++..++...    +... ++.+..|.||......    .+..+||
T Consensus       131 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~----r~~~-~~~~~~~~iYv~GG~~~~~~~~~~~yd  192 (323)
T TIGR03548       131 GNRNGKPSNKSYLFNLETQEWFELPDFPGEP----RVQP-VCVKLQNELYVFGGGSNIAYTDGYKYS  192 (323)
T ss_pred             CcCCCccCceEEEEcCCCCCeeECCCCCCCC----CCcc-eEEEECCEEEEEcCCCCccccceEEEe
Confidence            74222 2336888899999999998876421    2211 1112234888876332    2345788

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.85  E-value=0.00047  Score=60.63  Aligned_cols=37  Identities=30%  Similarity=0.347  Sum_probs=35.6

Q ss_pred             CCCCCcHHHHHHHHHcCCcchhccccccchhhhhccc
Q 038767           16 SRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDI   52 (336)
Q Consensus        16 ~Ws~LP~dll~~Il~rLp~~dl~rfr~VCk~Wr~~~~   52 (336)
                      .|..||+|++..|+..|+.+++++...|||+|..+.+
T Consensus        97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~  133 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLAS  133 (419)
T ss_pred             CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccc
Confidence            3999999999999999999999999999999999986

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=96.08  E-value=0.057  Score=49.79  Aligned_cols=101  Identities=14%  Similarity=0.164  Sum_probs=66.9

Q ss_pred             CCCCeeeeeeeCC-ccccccEEEeCCeEEEEeeCC-----------CcEEEEEecCCceeeecCCCCcccc-eeeEEEeC
Q 038767          159 GDTTWTELRFQDN-YRYVKNMVRADGFLYCSFFSL-----------DAIVAFNVASQNWEILPYPPSILFM-YKYLTEYD  225 (336)
Q Consensus       159 g~~~W~~~~~~~~-~~~~~d~v~~~G~~Y~l~~~~-----------g~i~~~Dl~~~~~~~i~~p~p~~~~-~~~Lve~~  225 (336)
                      ..+.|+.+...+. .+....++..+|++|++....           ..+..||+.+++|+.+..+.|.... ....+..+
T Consensus        39 ~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~  118 (346)
T TIGR03547        39 PSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHN  118 (346)
T ss_pred             CCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeC
Confidence            5678998775531 122345678899999997431           2588999999999988643343211 11232578


Q ss_pred             CcEEEEEEEecCc-----------------------------------ceEEEEeecCCCceEEecccC
Q 038767          226 GSLLILAKVVNSS-----------------------------------GYRVFTLNRSQMDWFEIECLD  259 (336)
Q Consensus       226 G~LllV~~~~~~~-----------------------------------~~~V~~ld~~~~~W~~v~~Lg  259 (336)
                      |+|+++.......                                   .=.|+..|.++.+|.++..|+
T Consensus       119 g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p  187 (346)
T TIGR03547       119 GQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENP  187 (346)
T ss_pred             CEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCC
Confidence            9999987632100                                   125777799999999998776

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=95.42  E-value=0.22  Score=45.98  Aligned_cols=82  Identities=12%  Similarity=0.265  Sum_probs=51.3

Q ss_pred             cEEEeCCeEEEEeeC--CCcEEEEEecCCceeeecCC---CCcccceeeEEEeCCcEEEEEEEecC---cce----EEEE
Q 038767          177 NMVRADGFLYCSFFS--LDAIVAFNVASQNWEILPYP---PSILFMYKYLTEYDGSLLILAKVVNS---SGY----RVFT  244 (336)
Q Consensus       177 d~v~~~G~~Y~l~~~--~g~i~~~Dl~~~~~~~i~~p---~p~~~~~~~Lve~~G~LllV~~~~~~---~~~----~V~~  244 (336)
                      ..+.++|.||--..+  .+.++.+++...+|+.+..|   +|.+... -.|.-.|.|+|......+   ..|    ..|.
T Consensus        80 ELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq-~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~  158 (521)
T KOG1230|consen   80 ELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQ-AVAVPSNILWLFGGEFASPNQEQFHHYKDLWL  158 (521)
T ss_pred             eeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccce-eEEeccCeEEEeccccCCcchhhhhhhhheee
Confidence            345667777652211  15899999999999977653   3443222 222234677776654222   222    5789


Q ss_pred             eecCCCceEEecccC
Q 038767          245 LNRSQMDWFEIECLD  259 (336)
Q Consensus       245 ld~~~~~W~~v~~Lg  259 (336)
                      +|..+.+|+++..=|
T Consensus       159 fd~~trkweql~~~g  173 (521)
T KOG1230|consen  159 FDLKTRKWEQLEFGG  173 (521)
T ss_pred             eeeccchheeeccCC
Confidence            999999999997655

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=95.25  E-value=0.15  Score=47.77  Aligned_cols=100  Identities=16%  Similarity=0.164  Sum_probs=64.7

Q ss_pred             CCCeeeeeeeCC-ccccccEEEeCCeEEEEeeCC-----------CcEEEEEecCCceeeecCCCCcccceeeEEE-eCC
Q 038767          160 DTTWTELRFQDN-YRYVKNMVRADGFLYCSFFSL-----------DAIVAFNVASQNWEILPYPPSILFMYKYLTE-YDG  226 (336)
Q Consensus       160 ~~~W~~~~~~~~-~~~~~d~v~~~G~~Y~l~~~~-----------g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve-~~G  226 (336)
                      .+.|+.+...+. ......++..+|++|++....           ..+.+||+.+++|+.+..+.|........+. .+|
T Consensus        61 ~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~  140 (376)
T PRK14131         61 SKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNG  140 (376)
T ss_pred             CCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCC
Confidence            468987764431 122334677899999996421           2588999999999988642233211222333 689


Q ss_pred             cEEEEEEEecC-----------------------------------cceEEEEeecCCCceEEecccC
Q 038767          227 SLLILAKVVNS-----------------------------------SGYRVFTLNRSQMDWFEIECLD  259 (336)
Q Consensus       227 ~LllV~~~~~~-----------------------------------~~~~V~~ld~~~~~W~~v~~Lg  259 (336)
                      +|+++......                                   ..-.|+..|.++.+|.++..++
T Consensus       141 ~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p  208 (376)
T PRK14131        141 KAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESP  208 (376)
T ss_pred             EEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCC
Confidence            99888763110                                   0135888899999999987766

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=94.05  E-value=3.7  Score=38.22  Aligned_cols=130  Identities=12%  Similarity=0.218  Sum_probs=79.9

Q ss_pred             EEEEecCCCCeeeeeeeCC-c-cccccEEE-eCCeEEEEeeC---C--------CcEEEEEecCCceeeecCC---CCcc
Q 038767          153 ISICRPGDTTWTELRFQDN-Y-RYVKNMVR-ADGFLYCSFFS---L--------DAIVAFNVASQNWEILPYP---PSIL  215 (336)
Q Consensus       153 v~~~~~g~~~W~~~~~~~~-~-~~~~d~v~-~~G~~Y~l~~~---~--------g~i~~~Dl~~~~~~~i~~p---~p~~  215 (336)
                      +.+|....++|+.+..++. . +....+|. -.|.+|.....   |        -.+..||+.+.+|..+..+   .|. 
T Consensus       100 Ly~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~R-  178 (521)
T KOG1230|consen  100 LYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPR-  178 (521)
T ss_pred             eeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCC-
Confidence            3778888899999876531 1 12334444 44777776531   1        2689999999999988653   232 


Q ss_pred             cceeeEEEeCCcEEEEEEEecC-cc----eEEEEeecCCCceEEecccCCeEEEeeCCceEEeecCCCeEEEEEec
Q 038767          216 FMYKYLTEYDGSLLILAKVVNS-SG----YRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKGCAFANIMH  286 (336)
Q Consensus       216 ~~~~~Lve~~G~LllV~~~~~~-~~----~~V~~ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~a~~G~IYf~~~~  286 (336)
                       ....+|.+.-+|++....... ..    =.||.+|.++-+|.+++- ++..==.-.+|.+++. .+|.||....|
T Consensus       179 -SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep-sga~PtpRSGcq~~vt-pqg~i~vyGGY  251 (521)
T KOG1230|consen  179 -SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP-SGAGPTPRSGCQFSVT-PQGGIVVYGGY  251 (521)
T ss_pred             -ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC-CCCCCCCCCcceEEec-CCCcEEEEcch
Confidence             234577788888887765332 11    157888889999999987 4431001124444432 24577776644

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=92.65  E-value=0.18  Score=30.41  Aligned_cols=28  Identities=18%  Similarity=0.174  Sum_probs=20.2

Q ss_pred             ccccEEEeCCeEEEEeeCCCcEEEEEecC
Q 038767          174 YVKNMVRADGFLYCSFFSLDAIVAFNVAS  202 (336)
Q Consensus       174 ~~~d~v~~~G~~Y~l~~~~g~i~~~Dl~~  202 (336)
                      ....+++.+|.+|+.+.+ |.+++||.++
T Consensus        13 ~~~~~~v~~g~vyv~~~d-g~l~ald~~t   40 (40)
T PF13570_consen   13 IWSSPAVAGGRVYVGTGD-GNLYALDAAT   40 (40)
T ss_dssp             --S--EECTSEEEEE-TT-SEEEEEETT-
T ss_pred             cCcCCEEECCEEEEEcCC-CEEEEEeCCC
Confidence            456678999999999998 9999999863

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=92.59  E-value=1.6  Score=42.34  Aligned_cols=106  Identities=13%  Similarity=0.113  Sum_probs=70.8

Q ss_pred             EEEEEecCCCCeeeeeeeCCcc---ccccEEEeCCeEEEEeeC------CCcEEEEEecCCceeeecC----CCCcccce
Q 038767          152 CISICRPGDTTWTELRFQDNYR---YVKNMVRADGFLYCSFFS------LDAIVAFNVASQNWEILPY----PPSILFMY  218 (336)
Q Consensus       152 ~v~~~~~g~~~W~~~~~~~~~~---~~~d~v~~~G~~Y~l~~~------~g~i~~~Dl~~~~~~~i~~----p~p~~~~~  218 (336)
                      -+..+...+..|+.+....+.+   ....++.++.++|+....      ...++++|+.+.+|..+..    |.|.+  .
T Consensus       140 ~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~--g  217 (482)
T KOG0379|consen  140 ELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRY--G  217 (482)
T ss_pred             heEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCC--C
Confidence            4577888899999887543322   244566777888887632      1479999999999998765    22332  2


Q ss_pred             eeEEEeCCcEEEEEEEecCc--ceEEEEeecCCCceEEecccC
Q 038767          219 KYLTEYDGSLLILAKVVNSS--GYRVFTLNRSQMDWFEIECLD  259 (336)
Q Consensus       219 ~~Lve~~G~LllV~~~~~~~--~~~V~~ld~~~~~W~~v~~Lg  259 (336)
                      .-++..+++++++...+.+.  -=.||.||..+.+|.++...|
T Consensus       218 H~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g  260 (482)
T KOG0379|consen  218 HAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGG  260 (482)
T ss_pred             ceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccC
Confidence            23555677787777654222  236888999889998775444

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=91.99  E-value=5.2  Score=38.77  Aligned_cols=105  Identities=12%  Similarity=0.203  Sum_probs=67.5

Q ss_pred             EEEEecCCCCeeeeeeeCCccc---cccEEEeCCeEEEEeeCC------CcEEEEEecCCceeeecC----CCCccccee
Q 038767          153 ISICRPGDTTWTELRFQDNYRY---VKNMVRADGFLYCSFFSL------DAIVAFNVASQNWEILPY----PPSILFMYK  219 (336)
Q Consensus       153 v~~~~~g~~~W~~~~~~~~~~~---~~d~v~~~G~~Y~l~~~~------g~i~~~Dl~~~~~~~i~~----p~p~~~~~~  219 (336)
                      +.+++.....|+........+.   ...++..+.++|......      ..|..||+.+.+|+.+..    |+|.   ..
T Consensus        90 l~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r---~~  166 (482)
T KOG0379|consen   90 LYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR---AG  166 (482)
T ss_pred             eEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc---cc
Confidence            5666666778876554322222   345667788888887541      279999999999987653    2222   22


Q ss_pred             eEEEeCCcEEEEEEEecC---cceEEEEeecCCCceEEecccCC
Q 038767          220 YLTEYDGSLLILAKVVNS---SGYRVFTLNRSQMDWFEIECLDD  260 (336)
Q Consensus       220 ~Lve~~G~LllV~~~~~~---~~~~V~~ld~~~~~W~~v~~Lg~  260 (336)
                      +-+...|+.++|..-+..   ....+|.+|.++.+|.++...|.
T Consensus       167 Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~  210 (482)
T KOG0379|consen  167 HSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGE  210 (482)
T ss_pred             ceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCC
Confidence            333334455555543322   35689999999999999988774

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=91.85  E-value=0.34  Score=30.57  Aligned_cols=39  Identities=18%  Similarity=0.378  Sum_probs=30.4

Q ss_pred             EEEeCCcEEEEEEE---e-cCcceEEEEeecCCCceEEecccC
Q 038767          221 LTEYDGSLLILAKV---V-NSSGYRVFTLNRSQMDWFEIECLD  259 (336)
Q Consensus       221 Lve~~G~LllV~~~---~-~~~~~~V~~ld~~~~~W~~v~~Lg  259 (336)
                      .+..+++|+++...   . ....-.|+.+|.++.+|.++..+|
T Consensus         7 ~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    7 AVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             EEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            45678999999885   1 124568899999999999998775

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=91.32  E-value=7.6  Score=35.52  Aligned_cols=121  Identities=14%  Similarity=0.118  Sum_probs=66.7

Q ss_pred             cccEEEe--CCeEEEEeeCCCcEEEEEecCCc------eeeecCCC-Cccc--ceeeEEEe---CCcEEEEEEEecC---
Q 038767          175 VKNMVRA--DGFLYCSFFSLDAIVAFNVASQN------WEILPYPP-SILF--MYKYLTEY---DGSLLILAKVVNS---  237 (336)
Q Consensus       175 ~~d~v~~--~G~~Y~l~~~~g~i~~~Dl~~~~------~~~i~~p~-p~~~--~~~~Lve~---~G~LllV~~~~~~---  237 (336)
                      +.+.++.  +|.+|+++.+ |.|+.+|++.+.      |+.+.... -.+|  ....++..   .|+|++. ++...   
T Consensus       186 f~~~~~~~~~~~~~F~Sy~-G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvL-Mh~g~~gs  263 (342)
T PF06433_consen  186 FEHPAYSRDGGRLYFVSYE-GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVL-MHQGGEGS  263 (342)
T ss_dssp             -S--EEETTTTEEEEEBTT-SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEE-EEE--TT-
T ss_pred             ccccceECCCCeEEEEecC-CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEE-ecCCCCCC
Confidence            5555554  4689999999 999999999875      43332110 0012  12334433   5677754 33221   


Q ss_pred             ---cceEEEEeecCCCceEEecccCCeEEEeeCCceEEeecCCC-eEEEEEeccCCcEEEecCcccccccCccccCCCcc
Q 038767          238 ---SGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKG-CAFANIMHWFGPYSYIRDQWSEFIRKPVESDSSKV  313 (336)
Q Consensus       238 ---~~~~V~~ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~a~~G-~IYf~~~~~~~~~vy~~~~~~~~~~~~~~~~~g~~  313 (336)
                         ..-+||.+|..+++=+..-.|+..+.      |..++...- .+|-.+....++.|||             ..+|+.
T Consensus       264 HKdpgteVWv~D~~t~krv~Ri~l~~~~~------Si~Vsqd~~P~L~~~~~~~~~l~v~D-------------~~tGk~  324 (342)
T PF06433_consen  264 HKDPGTEVWVYDLKTHKRVARIPLEHPID------SIAVSQDDKPLLYALSAGDGTLDVYD-------------AATGKL  324 (342)
T ss_dssp             TTS-EEEEEEEETTTTEEEEEEEEEEEES------EEEEESSSS-EEEEEETTTTEEEEEE-------------TTT--E
T ss_pred             ccCCceEEEEEECCCCeEEEEEeCCCccc------eEEEccCCCcEEEEEcCCCCeEEEEe-------------CcCCcE
Confidence               36799999998876444444443321      444444322 7776664445677899             788875


Q ss_pred             ccc
Q 038767          314 APR  316 (336)
Q Consensus       314 ~~~  316 (336)
                      ...
T Consensus       325 ~~~  327 (342)
T PF06433_consen  325 VRS  327 (342)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=91.12  E-value=12  Score=34.14  Aligned_cols=136  Identities=13%  Similarity=0.065  Sum_probs=76.2

Q ss_pred             cccEEEe-CCeE-EEEeeCCCcEEEEEecC--CceeeecCC--CCccc-----ceeeEEEeCCcEEEEEEEecCcceEEE
Q 038767          175 VKNMVRA-DGFL-YCSFFSLDAIVAFNVAS--QNWEILPYP--PSILF-----MYKYLTEYDGSLLILAKVVNSSGYRVF  243 (336)
Q Consensus       175 ~~d~v~~-~G~~-Y~l~~~~g~i~~~Dl~~--~~~~~i~~p--~p~~~-----~~~~Lve~~G~LllV~~~~~~~~~~V~  243 (336)
                      -+.++|+ ||++ |+++.-.+.|.+++.+.  .+++.++.-  .|..+     ....-+..+|+-+.+.- .....+.+|
T Consensus       193 PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN-Rg~dsI~~f  271 (346)
T COG2706         193 PRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN-RGHDSIAVF  271 (346)
T ss_pred             cceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec-CCCCeEEEE
Confidence            5678887 5665 88876436787777765  567666541  23321     22223446888776654 244689999


Q ss_pred             EeecCCCceEEe--cccCC---eEEEeeCCceEEeecCCCeEEEEEeccCCcEEEecCcccccccCccccCCCccccccc
Q 038767          244 TLNRSQMDWFEI--ECLDD---RALFMGASCLWWVPVEKGCAFANIMHWFGPYSYIRDQWSEFIRKPVESDSSKVAPRIR  318 (336)
Q Consensus       244 ~ld~~~~~W~~v--~~Lg~---~alFlg~~~s~~~~a~~G~IYf~~~~~~~~~vy~~~~~~~~~~~~~~~~~g~~~~~~~  318 (336)
                      ++|+..++-+-+  .+.++   |.+=+..+..        -+|..........||.+|           =++|+...+. 
T Consensus       272 ~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~--------~Liaa~q~sd~i~vf~~d-----------~~TG~L~~~~-  331 (346)
T COG2706         272 SVDPDGGKLELVGITPTEGQFPRDFNINPSGR--------FLIAANQKSDNITVFERD-----------KETGRLTLLG-  331 (346)
T ss_pred             EEcCCCCEEEEEEEeccCCcCCccceeCCCCC--------EEEEEccCCCcEEEEEEc-----------CCCceEEecc-
Confidence            999976643322  22222   3333333322        444444333345677733           5677777665 


Q ss_pred             ccccccccCCceeeeee
Q 038767          319 GYEYWKEEDTTQIWIQP  335 (336)
Q Consensus       319 ~~~~~~~~~~~~~Wi~p  335 (336)
                      .+.    .-|.|+||..
T Consensus       332 ~~~----~~p~Pvcv~f  344 (346)
T COG2706         332 RYA----VVPEPVCVKF  344 (346)
T ss_pred             ccc----CCCCcEEEEE
Confidence            322    1245788864

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=90.63  E-value=1.1  Score=27.66  Aligned_cols=40  Identities=8%  Similarity=0.096  Sum_probs=31.9

Q ss_pred             eEEEeCCcEEEEEEEecC--cceEEEEeecCCCceEEecccC
Q 038767          220 YLTEYDGSLLILAKVVNS--SGYRVFTLNRSQMDWFEIECLD  259 (336)
Q Consensus       220 ~Lve~~G~LllV~~~~~~--~~~~V~~ld~~~~~W~~v~~Lg  259 (336)
                      -.+..+|+|+++......  ..-.|+++|.++.+|+++.+|.
T Consensus         6 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    6 AAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             EEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             EEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            467789999999986542  3557888999999999998763

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13964 Kelch_6: Kelch motif

Probab=90.52  E-value=0.7  Score=29.17  Aligned_cols=35  Identities=20%  Similarity=0.309  Sum_probs=27.8

Q ss_pred             ccEEEeCCeEEEEeeCC------CcEEEEEecCCceeeecC
Q 038767          176 KNMVRADGFLYCSFFSL------DAIVAFNVASQNWEILPY  210 (336)
Q Consensus       176 ~d~v~~~G~~Y~l~~~~------g~i~~~Dl~~~~~~~i~~  210 (336)
                      ..++..+|++|++....      ..+..||+.+++|+.+..
T Consensus         5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~   45 (50)
T PF13964_consen    5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPP   45 (50)
T ss_pred             CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCC
Confidence            34678999999997431      478999999999999853

>PF13964 Kelch_6: Kelch motif

Probab=89.63  E-value=0.63  Score=29.40  Aligned_cols=40  Identities=10%  Similarity=0.140  Sum_probs=31.4

Q ss_pred             eEEEeCCcEEEEEEEec--CcceEEEEeecCCCceEEecccC
Q 038767          220 YLTEYDGSLLILAKVVN--SSGYRVFTLNRSQMDWFEIECLD  259 (336)
Q Consensus       220 ~Lve~~G~LllV~~~~~--~~~~~V~~ld~~~~~W~~v~~Lg  259 (336)
                      .+|..+|+|+++.....  ...-.|+++|.++.+|+++.+|.
T Consensus         6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp   47 (50)
T PF13964_consen    6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP   47 (50)
T ss_pred             EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence            46778999999988543  13457888899999999998876

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=89.19  E-value=0.15  Score=45.47  Aligned_cols=36  Identities=17%  Similarity=0.175  Sum_probs=31.9

Q ss_pred             CCCCcHHHHHHHHHcC-----Ccchhccccccchhhhhccc
Q 038767           17 RSDLPLTIINLIVSRL-----YVVYQIRFRAVCKRWRSVDI   52 (336)
Q Consensus        17 Ws~LP~dll~~Il~rL-----p~~dl~rfr~VCk~Wr~~~~   52 (336)
                      .+.||+|+|..|+++.     ...++-++.+|||.|+-+++
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R  147 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCAR  147 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHc
Confidence            3679999999999986     35899999999999999986

>smart00564 PQQ beta-propeller repeat

Probab=87.60  E-value=1.5  Score=24.75  Aligned_cols=25  Identities=20%  Similarity=0.361  Sum_probs=20.5

Q ss_pred             EEeCCeEEEEeeCCCcEEEEEecCCc
Q 038767          179 VRADGFLYCSFFSLDAIVAFNVASQN  204 (336)
Q Consensus       179 v~~~G~~Y~l~~~~g~i~~~Dl~~~~  204 (336)
                      +..+|.+|+.+.+ |.++++|..+.+
T Consensus         3 ~~~~~~v~~~~~~-g~l~a~d~~~G~   27 (33)
T smart00564        3 VLSDGTVYVGSTD-GTLYALDAKTGE   27 (33)
T ss_pred             EEECCEEEEEcCC-CEEEEEEcccCc
Confidence            4678899998888 999999997653

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=87.47  E-value=10  Score=32.86  Aligned_cols=72  Identities=19%  Similarity=0.170  Sum_probs=44.7

Q ss_pred             cEEEe--CCeEEEEeeCCCcEEEEEecCCceeeecCCCCcccceeeEEE-eCCcEEEEEEEecCcceEEEEeecCCCceE
Q 038767          177 NMVRA--DGFLYCSFFSLDAIVAFNVASQNWEILPYPPSILFMYKYLTE-YDGSLLILAKVVNSSGYRVFTLNRSQMDWF  253 (336)
Q Consensus       177 d~v~~--~G~~Y~l~~~~g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve-~~G~LllV~~~~~~~~~~V~~ld~~~~~W~  253 (336)
                      .+++.  +|.||+.+...+.|+.+|+.+..-+.+..+.|.+    ..+. .+|.|++...    ....++  |.++.+++
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G----~~~~~~~g~l~v~~~----~~~~~~--d~~~g~~~   73 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNG----MAFDRPDGRLYVADS----GGIAVV--DPDTGKVT   73 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEE----EEEECTTSEEEEEET----TCEEEE--ETTTTEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCce----EEEEccCCEEEEEEc----CceEEE--ecCCCcEE
Confidence            45666  7999999865379999999988766666554332    2333 3455554432    223333  66666666


Q ss_pred             Eeccc
Q 038767          254 EIECL  258 (336)
Q Consensus       254 ~v~~L  258 (336)
                      .+.++
T Consensus        74 ~~~~~   78 (246)
T PF08450_consen   74 VLADL   78 (246)
T ss_dssp             EEEEE
T ss_pred             EEeec
Confidence            66554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=87.43  E-value=2.7  Score=36.77  Aligned_cols=100  Identities=17%  Similarity=0.300  Sum_probs=62.5

Q ss_pred             cCCCCeeeeeeeCC---ccccccEEEeCCeEEEEeeC--------------CCcEEEEEecCCceeeecC-C-CCcccce
Q 038767          158 PGDTTWTELRFQDN---YRYVKNMVRADGFLYCSFFS--------------LDAIVAFNVASQNWEILPY-P-PSILFMY  218 (336)
Q Consensus       158 ~g~~~W~~~~~~~~---~~~~~d~v~~~G~~Y~l~~~--------------~g~i~~~Dl~~~~~~~i~~-p-~p~~~~~  218 (336)
                      -.+..|+.+.....   .+.+...+..+|.+|.....              ...|.++|+.++.|..-+. + .|.+-..
T Consensus       164 ~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRS  243 (392)
T KOG4693|consen  164 FATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRS  243 (392)
T ss_pred             ccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccc
Confidence            34457877654321   11233345566788877531              1479999999999976422 1 1333233


Q ss_pred             eeEEEeCCcEEEEEEEecC--cce-EEEEeecCCCceEEecc
Q 038767          219 KYLTEYDGSLLILAKVVNS--SGY-RVFTLNRSQMDWFEIEC  257 (336)
Q Consensus       219 ~~Lve~~G~LllV~~~~~~--~~~-~V~~ld~~~~~W~~v~~  257 (336)
                      ......+|++++...+...  ..| ++|++|..+..|..+.-
T Consensus       244 HS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~  285 (392)
T KOG4693|consen  244 HSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV  285 (392)
T ss_pred             cceEEEcceEEEecccchhhhhhhcceeecccccchheeeec
Confidence            3345589999999885332  233 68999999999988753

>KOG2502 consensus Tub family proteins [General function prediction only]

Probab=85.73  E-value=0.62  Score=42.10  Aligned_cols=39  Identities=18%  Similarity=0.412  Sum_probs=34.0

Q ss_pred             CCCCCCcHHHHHHHHHcCC-c-------chhccccccchhhhhcccc
Q 038767           15 RSRSDLPLTIINLIVSRLY-V-------VYQIRFRAVCKRWRSVDIQ   53 (336)
Q Consensus        15 ~~Ws~LP~dll~~Il~rLp-~-------~dl~rfr~VCk~Wr~~~~~   53 (336)
                      ..|++||+++|..|+.|.. .       ++.+....||+.||.....
T Consensus        43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~   89 (355)
T KOG2502|consen   43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE   89 (355)
T ss_pred             chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence            5899999999999999983 2       4788999999999998863

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=83.44  E-value=3.1  Score=25.57  Aligned_cols=34  Identities=18%  Similarity=0.299  Sum_probs=27.2

Q ss_pred             ccEEEeCCeEEEEeeCC------CcEEEEEecCCceeeec
Q 038767          176 KNMVRADGFLYCSFFSL------DAIVAFNVASQNWEILP  209 (336)
Q Consensus       176 ~d~v~~~G~~Y~l~~~~------g~i~~~Dl~~~~~~~i~  209 (336)
                      ..++.++|++|++....      ..+..||+.++.|+.++
T Consensus         5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~   44 (47)
T PF01344_consen    5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP   44 (47)
T ss_dssp             EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred             CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence            34678999999997431      37899999999999875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=82.40  E-value=40  Score=30.97  Aligned_cols=114  Identities=18%  Similarity=0.216  Sum_probs=64.6

Q ss_pred             EEEEEccCCceEEEEEEecCCCCeeeeeeeCCcc-------ccccEEEe-CCe-EEEEeeCCCcEEEEEecC--Cceeee
Q 038767          140 IFVIWVGVMEISCISICRPGDTTWTELRFQDNYR-------YVKNMVRA-DGF-LYCSFFSLDAIVAFNVAS--QNWEIL  208 (336)
Q Consensus       140 v~~~~~~~~~~~~v~~~~~g~~~W~~~~~~~~~~-------~~~d~v~~-~G~-~Y~l~~~~g~i~~~Dl~~--~~~~~i  208 (336)
                      +.++++.++.. .+.-+...++.++.++..+..+       ...++++. +|+ +|+-++..+.|.+|+++.  ...+.+
T Consensus       206 ~Yv~~e~s~~v-~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~  284 (345)
T PF10282_consen  206 AYVVNELSNTV-SVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLV  284 (345)
T ss_dssp             EEEEETTTTEE-EEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEE
T ss_pred             EEEecCCCCcE-EEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEE
Confidence            34444444433 2223333455666665432221       13445554 676 566665546899999954  355544


Q ss_pred             cCCCCc-c-cceeeEEEeCCcEEEEEEEecCcceEEEEeecCCCceEEec
Q 038767          209 PYPPSI-L-FMYKYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIE  256 (336)
Q Consensus       209 ~~p~p~-~-~~~~~Lve~~G~LllV~~~~~~~~~~V~~ld~~~~~W~~v~  256 (336)
                      ..- +. + ..+...+.-+|+.++|.. ..+..+.||++|.+++.+..+.
T Consensus       285 ~~~-~~~G~~Pr~~~~s~~g~~l~Va~-~~s~~v~vf~~d~~tG~l~~~~  332 (345)
T PF10282_consen  285 QTV-PTGGKFPRHFAFSPDGRYLYVAN-QDSNTVSVFDIDPDTGKLTPVG  332 (345)
T ss_dssp             EEE-EESSSSEEEEEE-TTSSEEEEEE-TTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEE-eCCCCCccEEEEeCCCCEEEEEe-cCCCeEEEEEEeCCCCcEEEec
Confidence            321 11 1 122334556899988877 4667899999999988887764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=81.79  E-value=4  Score=25.52  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=26.3

Q ss_pred             cEEEeCCeEEEEeeC----C----CcEEEEEecCCceeeecC
Q 038767          177 NMVRADGFLYCSFFS----L----DAIVAFNVASQNWEILPY  210 (336)
Q Consensus       177 d~v~~~G~~Y~l~~~----~----g~i~~~Dl~~~~~~~i~~  210 (336)
                      .++..++++|+....    .    ..+.+||+.+.+|+.+..
T Consensus         6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~   47 (49)
T PF07646_consen    6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP   47 (49)
T ss_pred             EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence            456789999988643    1    478999999999998853

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=81.62  E-value=43  Score=30.75  Aligned_cols=138  Identities=14%  Similarity=0.138  Sum_probs=75.8

Q ss_pred             cccEEEe-CC-eEEEEeeCCCcEEEEEec--CCceeeecCC--CCccc----ceeeE-EEeCCcEEEEEEEecCcceEEE
Q 038767          175 VKNMVRA-DG-FLYCSFFSLDAIVAFNVA--SQNWEILPYP--PSILF----MYKYL-TEYDGSLLILAKVVNSSGYRVF  243 (336)
Q Consensus       175 ~~d~v~~-~G-~~Y~l~~~~g~i~~~Dl~--~~~~~~i~~p--~p~~~----~~~~L-ve~~G~LllV~~~~~~~~~~V~  243 (336)
                      -+.++++ +| .+|+++...+.|.+|++.  ...++.++..  .|...    ...-+ +.-+|+.+.|.. .....+.+|
T Consensus       194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn-r~~~sI~vf  272 (345)
T PF10282_consen  194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN-RGSNSISVF  272 (345)
T ss_dssp             EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE-CTTTEEEEE
T ss_pred             CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe-ccCCEEEEE
Confidence            4567775 44 578887664789999998  3445544321  11111    12234 334788777765 356789999


Q ss_pred             EeecCCCceEEecccCCeEEEeeCCceEEee-cCCC-eEEEEEeccCCcEEEecCcccccccCccccCCCcccccccccc
Q 038767          244 TLNRSQMDWFEIECLDDRALFMGASCLWWVP-VEKG-CAFANIMHWFGPYSYIRDQWSEFIRKPVESDSSKVAPRIRGYE  321 (336)
Q Consensus       244 ~ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~-a~~G-~IYf~~~~~~~~~vy~~~~~~~~~~~~~~~~~g~~~~~~~~~~  321 (336)
                      ++|.+.++...+..+.     .+...-..+. ...| .+|-.........+|+.|           -++|+++... ...
T Consensus       273 ~~d~~~g~l~~~~~~~-----~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d-----------~~tG~l~~~~-~~~  335 (345)
T PF10282_consen  273 DLDPATGTLTLVQTVP-----TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID-----------PDTGKLTPVG-SSV  335 (345)
T ss_dssp             EECTTTTTEEEEEEEE-----ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE-----------TTTTEEEEEE-EEE
T ss_pred             EEecCCCceEEEEEEe-----CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe-----------CCCCcEEEec-ccc
Confidence            9988766666554322     1111111111 1235 677666555556788722           4678877665 221


Q ss_pred             cccccCCceeeee
Q 038767          322 YWKEEDTTQIWIQ  334 (336)
Q Consensus       322 ~~~~~~~~~~Wi~  334 (336)
                          ..|.|.||.
T Consensus       336 ----~~~~p~ci~  344 (345)
T PF10282_consen  336 ----PIPSPVCIV  344 (345)
T ss_dssp             ----ESSSEEEEE
T ss_pred             ----cCCCCEEEe
Confidence                124567663

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=81.54  E-value=0.73  Score=41.60  Aligned_cols=35  Identities=31%  Similarity=0.429  Sum_probs=32.5

Q ss_pred             CCCc----HHHHHHHHHcCCcchhccccccchhhhhccc
Q 038767           18 SDLP----LTIINLIVSRLYVVYQIRFRAVCKRWRSVDI   52 (336)
Q Consensus        18 s~LP----~dll~~Il~rLp~~dl~rfr~VCk~Wr~~~~   52 (336)
                      ..||    +++.+.|+.-|...+|..+..|||.|+.++.
T Consensus        76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~  114 (499)
T KOG0281|consen   76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLS  114 (499)
T ss_pred             HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhc
Confidence            4689    9999999999999999999999999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	336
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.94
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	98.78
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.78
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.76
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.7
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.67
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.51
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.41
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.37
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.34
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.25
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.25
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	98.18
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.14
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.03
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.98
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.65
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.25
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.11
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.07
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.94
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.56
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.51
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	95.99
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	95.98
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.91
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	95.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	87.3
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	80.86

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.94  E-value=2.7e-10  Score=73.99  Aligned_cols=41  Identities=27%  Similarity=0.405  Sum_probs=35.1

Q ss_pred             cccCCCCCCcHHHHHHHHHcCCcchhccccccchhhhhccc
Q 038767           12 LERRSRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDI   52 (336)
Q Consensus        12 ~~~~~Ws~LP~dll~~Il~rLp~~dl~rfr~VCk~Wr~~~~   52 (336)
                      .+...|++||+|++..|+.+|+..|+++++.|||+|+.++.
T Consensus         4 ~~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            4 FPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             -----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            34567999999999999999999999999999999999985

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=98.78  E-value=1.4e-05  Score=71.32  Aligned_cols=196  Identities=12%  Similarity=0.171  Sum_probs=113.1

Q ss_pred             eEEEEeCCeEEEEeCCCCcEEEEeccC-CCccc----cCCCe--eEEec----CC-------eEEEec--cCceeeCCCC
Q 038767           60 WLMGYNSHSCYLYDPCHKQRFTVFISD-KNRTT----LLGAR--PLDSK----NG-------WVLFEG--EKNIINLPVW  119 (336)
Q Consensus        60 ~ll~~~~~~~~~~~p~~~~~~~~~~~~-~P~~~----~~~~~--~~~s~----~G-------wL~~~~--T~~~~~LP~~  119 (336)
                      .++++.+.....|||.+++|...+... .|...    ..+..  ++|-.    .+       .+...|  |+++..+|++
T Consensus        17 ~i~~~GG~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~   96 (318)
T 2woz_A           17 LILLVNDTAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL   96 (318)
T ss_dssp             EEEEECSSEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCB
T ss_pred             hhhhccccceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCC
Confidence            344444556788999999998755421 12111    11111  12210    01       133444  6777777766


Q ss_pred             Cccce-eEEEeecCCCCCCeEEE-EEEc-cCCceEEEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeC-----
Q 038767          120 REFSI-AKATFSATPVSPDCVIF-VIWV-GVMEISCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFS-----  191 (336)
Q Consensus       120 ~~~~~-~~~~~s~~p~~~~~~v~-~~~~-~~~~~~~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~-----  191 (336)
                      +..+. +.++..    .....++ +.+. .......+..+.+.+++|+.+...+.-.....++..+|++|++...     
T Consensus        97 p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  172 (318)
T 2woz_A           97 PSARCLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKK  172 (318)
T ss_dssp             SSCBCSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSC
T ss_pred             CccccccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCC
Confidence            54222 111110    0111122 2211 1122345678889999999887544222345567799999999742     


Q ss_pred             -CCcEEEEEecCCceeeecCCCCcccceeeEEEeCCcEEEEEEEecCc-ceEEEEeecCCCceEEecccCC
Q 038767          192 -LDAIVAFNVASQNWEILPYPPSILFMYKYLTEYDGSLLILAKVVNSS-GYRVFTLNRSQMDWFEIECLDD  260 (336)
Q Consensus       192 -~g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~G~LllV~~~~~~~-~~~V~~ld~~~~~W~~v~~Lg~  260 (336)
                       ...+.+||+.+++|+.+.. .|..-.....+..+|+|+++....... .-.|+.+|.++.+|.++..++.
T Consensus       173 ~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~  242 (318)
T 2woz_A          173 CTNRVFIYNPKKGDWKDLAP-MKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ  242 (318)
T ss_dssp             BCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS
T ss_pred             ccceEEEEcCCCCEEEECCC-CCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC
Confidence             1469999999999998853 222112233566799999998753332 3467888999999999987763

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.78  E-value=5.6e-06  Score=73.79  Aligned_cols=192  Identities=12%  Similarity=0.148  Sum_probs=112.7

Q ss_pred             EEEEeCCeEEEEeCCCCcEEEEeccCC-Cccc-----cCCCe-eEEec-------C----CeEEEec--cCceeeCCCCC
Q 038767           61 LMGYNSHSCYLYDPCHKQRFTVFISDK-NRTT-----LLGAR-PLDSK-------N----GWVLFEG--EKNIINLPVWR  120 (336)
Q Consensus        61 ll~~~~~~~~~~~p~~~~~~~~~~~~~-P~~~-----~~~~~-~~~s~-------~----GwL~~~~--T~~~~~LP~~~  120 (336)
                      |+++.++....|||.+++|...++..+ |...     ..+.. ++|-.       .    ..+...|  |+++..+|+++
T Consensus         7 l~~~GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p   86 (315)
T 4asc_A            7 IFMISEEGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLP   86 (315)
T ss_dssp             EEEEETTEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBS
T ss_pred             EEEEcCCceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCC
Confidence            444455677899999999986444211 2100     11111 11210       0    0133334  67788887766


Q ss_pred             cccee-EEEeecCCCCCCeEEEEE---Ec--cCCceEEEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeC---
Q 038767          121 EFSIA-KATFSATPVSPDCVIFVI---WV--GVMEISCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFS---  191 (336)
Q Consensus       121 ~~~~~-~~~~s~~p~~~~~~v~~~---~~--~~~~~~~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~---  191 (336)
                      ..+.. .++..     .+. ++++   +.  .......+..+.+.+++|+.+...+.-.....++.++|++|++...   
T Consensus        87 ~~r~~~~~~~~-----~~~-lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  160 (315)
T 4asc_A           87 SPRCLFGLGEA-----LNS-IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSD  160 (315)
T ss_dssp             SCEESCEEEEE-----TTE-EEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTT
T ss_pred             cchhceeEEEE-----CCE-EEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCC
Confidence            43221 11110     122 2222   11  0112234578889999999887554323345567799999999743   


Q ss_pred             ---CCcEEEEEecCCceeeecCCCCcccceeeEEEeCCcEEEEEEEecC-cceEEEEeecCCCceEEecccC
Q 038767          192 ---LDAIVAFNVASQNWEILPYPPSILFMYKYLTEYDGSLLILAKVVNS-SGYRVFTLNRSQMDWFEIECLD  259 (336)
Q Consensus       192 ---~g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~G~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg  259 (336)
                         ...+.+||+.+++|+.+.. .|..-.....+..+|+|+++...... ..-.|+.+|.++.+|.++..+.
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p  231 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAP-MQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFP  231 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCS
T ss_pred             CcccceEEEEeCCCCeEEECCC-CCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCC
Confidence               1479999999999998863 23221223456679999999885332 2336888899999999998765

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.76  E-value=1.1e-06  Score=78.13  Aligned_cols=229  Identities=11%  Similarity=0.028  Sum_probs=132.3

Q ss_pred             ceEEEEe----CCeEEEEeCCCCcEEEEeccCCCccccCCCeeEEecCCeEEEe--------------c--cCceeeCCC
Q 038767           59 TWLMGYN----SHSCYLYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLFE--------------G--EKNIINLPV  118 (336)
Q Consensus        59 P~ll~~~----~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~s~~GwL~~~--------------~--T~~~~~LP~  118 (336)
                      ..|+++-    .+.+..|||.+.+|..+.....|. .  +. .....+|.|++.              |  |+++..+|+
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r-~--~~-~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~   87 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKR-R--DA-ACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG   87 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCC-B--SC-EEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCccc-c--ee-EEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence            4455552    246788999999998875432221 1  11 122234555444              2  556666655


Q ss_pred             CCcccee-EEEeecCCCCCCeEEEEEEc---cCCceEEEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeC---
Q 038767          119 WREFSIA-KATFSATPVSPDCVIFVIWV---GVMEISCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFS---  191 (336)
Q Consensus       119 ~~~~~~~-~~~~s~~p~~~~~~v~~~~~---~~~~~~~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~---  191 (336)
                      ++..+.. .++..     .+. ++++--   .......+..+.+..+.|+.+...+.-.....++..+|++|++...   
T Consensus        88 ~p~~r~~~~~~~~-----~~~-iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  161 (306)
T 3ii7_A           88 PPTPRDSLAACAA-----EGK-IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGN  161 (306)
T ss_dssp             CSSCCBSCEEEEE-----TTE-EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESC
T ss_pred             CCccccceeEEEE-----CCE-EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCC
Confidence            4432111 11110     111 222211   1111234578899999999986554223345567789999999731   


Q ss_pred             ------CCcEEEEEecCCceeeecCCCCcccceeeEEEeCCcEEEEEEEecC-cceEEEEeecCCCceEEecccCCeEEE
Q 038767          192 ------LDAIVAFNVASQNWEILPYPPSILFMYKYLTEYDGSLLILAKVVNS-SGYRVFTLNRSQMDWFEIECLDDRALF  264 (336)
Q Consensus       192 ------~g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~G~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg~~alF  264 (336)
                            ...+.+||+.+++|+.+.. .|.......++..+|+|+++...... ..-.|+.+|.++.+|.++..+..    
T Consensus       162 ~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~----  236 (306)
T 3ii7_A          162 NVSGRVLNSCEVYDPATETWTELCP-MIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW----  236 (306)
T ss_dssp             TTTCEECCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSC----
T ss_pred             CCcccccceEEEeCCCCCeEEECCC-ccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC----
Confidence                  1469999999999998863 23222233456679999988764332 23367888999999999987763    


Q ss_pred             eeCCceEEeecCCCeEEEEEec-----cCCcEEEecCcccccccCccccCCCcccccc
Q 038767          265 MGASCLWWVPVEKGCAFANIMH-----WFGPYSYIRDQWSEFIRKPVESDSSKVAPRI  317 (336)
Q Consensus       265 lg~~~s~~~~a~~G~IYf~~~~-----~~~~~vy~~~~~~~~~~~~~~~~~g~~~~~~  317 (336)
                       .+.. .++.+..|.||+....     ..+..+||             .++++|+.+.
T Consensus       237 -~r~~-~~~~~~~~~i~v~GG~~~~~~~~~~~~yd-------------~~~~~W~~~~  279 (306)
T 3ii7_A          237 -KGVT-VKCAAVGSIVYVLAGFQGVGRLGHILEYN-------------TETDKWVANS  279 (306)
T ss_dssp             -CBSC-CEEEEETTEEEEEECBCSSSBCCEEEEEE-------------TTTTEEEEEE
T ss_pred             -Cccc-eeEEEECCEEEEEeCcCCCeeeeeEEEEc-------------CCCCeEEeCC
Confidence             1111 1111123488887743     23446888             8888877654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.70  E-value=1e-05  Score=71.58  Aligned_cols=220  Identities=12%  Similarity=0.051  Sum_probs=128.6

Q ss_pred             eEEEEeCCCCcEEEEeccCCCccccCCCeeEEecCCeEEEe---------------c--cCceeeCCCCCccce-eEEEe
Q 038767           68 SCYLYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLFE---------------G--EKNIINLPVWREFSI-AKATF  129 (336)
Q Consensus        68 ~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~s~~GwL~~~---------------~--T~~~~~LP~~~~~~~-~~~~~  129 (336)
                      ....||+.+.+|..+.....|  .. +.. ....+|.|++.               |  |+++..+|+++..+. +.++.
T Consensus        31 ~~~~~d~~~~~W~~~~~~p~~--r~-~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~  106 (302)
T 2xn4_A           31 SVECYDFKEERWHQVAELPSR--RC-RAG-MVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV  106 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSSC--CB-SCE-EEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             cEEEEcCcCCcEeEcccCCcc--cc-cce-EEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE
Confidence            467899999999887542222  11 111 12234555444               2  566666666553221 11111


Q ss_pred             ecCCCCCCeEEEEEE--ccCCceEEEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeC-------CCcEEEEEe
Q 038767          130 SATPVSPDCVIFVIW--VGVMEISCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFS-------LDAIVAFNV  200 (336)
Q Consensus       130 s~~p~~~~~~v~~~~--~~~~~~~~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~-------~g~i~~~Dl  200 (336)
                      -     .+. ++++-  ........+..+.+.++.|+.+...+.-.....++.++|++|++...       ...+..||+
T Consensus       107 ~-----~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~  180 (302)
T 2xn4_A          107 L-----NGL-LYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNA  180 (302)
T ss_dssp             E-----TTE-EEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEET
T ss_pred             E-----CCE-EEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeC
Confidence            0     111 22221  11222345678899999999987554223345567789999999631       146999999


Q ss_pred             cCCceeeecCCCCcccceeeEEEeCCcEEEEEEEecC-cceEEEEeecCCCceEEecccCCeEEEeeCCceEEeecCCCe
Q 038767          201 ASQNWEILPYPPSILFMYKYLTEYDGSLLILAKVVNS-SGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKGC  279 (336)
Q Consensus       201 ~~~~~~~i~~p~p~~~~~~~Lve~~G~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~a~~G~  279 (336)
                      .+++|+.+.. .|.......++..+|+|+++...... ..-.|+.+|.++.+|.++..+...     +.. .++....|.
T Consensus       181 ~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-----r~~-~~~~~~~~~  253 (302)
T 2xn4_A          181 TTNEWTYIAE-MSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-----RRN-AGVCAVNGL  253 (302)
T ss_dssp             TTTEEEEECC-CSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC-----CBS-CEEEEETTE
T ss_pred             CCCcEEECCC-CccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc-----ccc-CeEEEECCE
Confidence            9999998853 23221223456678999988763222 123688889999999999877631     111 111112348


Q ss_pred             EEEEEecc-----CCcEEEecCcccccccCccccCCCcccccc
Q 038767          280 AFANIMHW-----FGPYSYIRDQWSEFIRKPVESDSSKVAPRI  317 (336)
Q Consensus       280 IYf~~~~~-----~~~~vy~~~~~~~~~~~~~~~~~g~~~~~~  317 (336)
                      ||+.....     .+..+||             .++++|+.+.
T Consensus       254 i~v~GG~~~~~~~~~v~~yd-------------~~~~~W~~~~  283 (302)
T 2xn4_A          254 LYVVGGDDGSCNLASVEYYN-------------PTTDKWTVVS  283 (302)
T ss_dssp             EEEECCBCSSSBCCCEEEEE-------------TTTTEEEECS
T ss_pred             EEEECCcCCCcccccEEEEc-------------CCCCeEEECC
Confidence            88876432     3356889             8888887654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.67  E-value=4.9e-06  Score=73.53  Aligned_cols=147  Identities=12%  Similarity=0.091  Sum_probs=97.0

Q ss_pred             EEEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeC-----CCcEEEEEecCCceeeecCCCCcccceeeEEEeC
Q 038767          151 SCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFS-----LDAIVAFNVASQNWEILPYPPSILFMYKYLTEYD  225 (336)
Q Consensus       151 ~~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~-----~g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~  225 (336)
                      ..+..+.+..++|+.+...+.-.....++..+|++|++...     ...+.+||+.+++|+.+.. .|.......++..+
T Consensus       128 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~~  206 (301)
T 2vpj_A          128 TSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTP-MATKRSGAGVALLN  206 (301)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEET
T ss_pred             ceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCC-CCcccccceEEEEC
Confidence            35688899999999987654323345567789999999642     1479999999999998853 23221233456678


Q ss_pred             CcEEEEEEEecCc-ceEEEEeecCCCceEEecccCCeEEEeeCCceEEeecCCCeEEEEEecc-----CCcEEEecCccc
Q 038767          226 GSLLILAKVVNSS-GYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKGCAFANIMHW-----FGPYSYIRDQWS  299 (336)
Q Consensus       226 G~LllV~~~~~~~-~~~V~~ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~a~~G~IYf~~~~~-----~~~~vy~~~~~~  299 (336)
                      |+|+++....... .-.|+.+|.++.+|.++..+...     +. ..++....|.||......     .+..+||     
T Consensus       207 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-----r~-~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd-----  275 (301)
T 2vpj_A          207 DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP-----RC-YVGATVLRGRLYAIAGYDGNSLLSSIECYD-----  275 (301)
T ss_dssp             TEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC-----CB-SCEEEEETTEEEEECCBCSSSBEEEEEEEE-----
T ss_pred             CEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc-----cc-ceeEEEECCEEEEEcCcCCCcccccEEEEc-----
Confidence            9999887642221 34678889999999999877531     11 111112234888876432     2345888     


Q ss_pred             ccccCccccCCCcccccc
Q 038767          300 EFIRKPVESDSSKVAPRI  317 (336)
Q Consensus       300 ~~~~~~~~~~~g~~~~~~  317 (336)
                              +++++|+.+.
T Consensus       276 --------~~~~~W~~~~  285 (301)
T 2vpj_A          276 --------PIIDSWEVVT  285 (301)
T ss_dssp             --------TTTTEEEEEE
T ss_pred             --------CCCCeEEEcC
Confidence                    8888887654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.51  E-value=1.7e-05  Score=70.52  Aligned_cols=146  Identities=10%  Similarity=0.060  Sum_probs=95.3

Q ss_pred             EEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeC-----CCcEEEEEecCCceeeecCCCCcccceeeEEEeCC
Q 038767          152 CISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFS-----LDAIVAFNVASQNWEILPYPPSILFMYKYLTEYDG  226 (336)
Q Consensus       152 ~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~-----~g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~G  226 (336)
                      .+..+.+.+++|+.+...+.-.....++.++|++|++...     ...+..||+.+++|+.+.. +|........+..+|
T Consensus       138 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~  216 (308)
T 1zgk_A          138 SVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA-MNTIRSGAGVCVLHN  216 (308)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEETT
T ss_pred             cEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC-CCCccccceEEEECC
Confidence            4578889999999887554223344567789999999642     1479999999999998754 222112233555689


Q ss_pred             cEEEEEEEecC-cceEEEEeecCCCceEEecccCCeEEEeeCCceEEeecCCCeEEEEEec-----cCCcEEEecCcccc
Q 038767          227 SLLILAKVVNS-SGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKGCAFANIMH-----WFGPYSYIRDQWSE  300 (336)
Q Consensus       227 ~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~a~~G~IYf~~~~-----~~~~~vy~~~~~~~  300 (336)
                      +|+++...... ..-.|+.+|.++.+|.++..+...     +. ..++....|.||+....     ..+..+||      
T Consensus       217 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-----r~-~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd------  284 (308)
T 1zgk_A          217 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR-----RS-ALGITVHQGRIYVLGGYDGHTFLDSVECYD------  284 (308)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC-----CB-SCEEEEETTEEEEECCBCSSCBCCEEEEEE------
T ss_pred             EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC-----cc-ceEEEEECCEEEEEcCcCCCcccceEEEEc------
Confidence            99988764222 235688889999999999877621     11 11111123488887633     23345888      


Q ss_pred             cccCccccCCCcccccc
Q 038767          301 FIRKPVESDSSKVAPRI  317 (336)
Q Consensus       301 ~~~~~~~~~~g~~~~~~  317 (336)
                             +++++|+.+.
T Consensus       285 -------~~~~~W~~~~  294 (308)
T 1zgk_A          285 -------PDTDTWSEVT  294 (308)
T ss_dssp             -------TTTTEEEEEE
T ss_pred             -------CCCCEEeecC
Confidence                   8888887654

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.41  E-value=9.7e-08  Score=83.95  Aligned_cols=39  Identities=21%  Similarity=0.389  Sum_probs=36.9

Q ss_pred             cCCCCCCcHHHHHHHHHcCCcchhc-cccccchhhhhccc
Q 038767           14 RRSRSDLPLTIINLIVSRLYVVYQI-RFRAVCKRWRSVDI   52 (336)
Q Consensus        14 ~~~Ws~LP~dll~~Il~rLp~~dl~-rfr~VCk~Wr~~~~   52 (336)
                      ......||+|||.+||.+||..+|+ ||++|||+||+++.
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~   87 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVD   87 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHT
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhc
Confidence            5578899999999999999999999 99999999999986

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.37  E-value=3.4e-05  Score=68.45  Aligned_cols=215  Identities=11%  Similarity=0.091  Sum_probs=123.2

Q ss_pred             cchhccccccchhhhhccccC-CC-C------cceEEEE--e----C-----CeEEEEeCCCCcEEEEeccCCCccccCC
Q 038767           34 VVYQIRFRAVCKRWRSVDIQY-RD-K------FTWLMGY--N----S-----HSCYLYDPCHKQRFTVFISDKNRTTLLG   94 (336)
Q Consensus        34 ~~dl~rfr~VCk~Wr~~~~~~-~~-~------~P~ll~~--~----~-----~~~~~~~p~~~~~~~~~~~~~P~~~~~~   94 (336)
                      ..++.+|-...+.|..+...+ +. .      .-.+.++  .    .     +....||+.+.+|..++....|.  .  
T Consensus        38 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--~--  113 (308)
T 1zgk_A           38 LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPR--N--  113 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCC--B--
T ss_pred             cceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCc--c--
Confidence            355666777777888774311 10 0      0122222  1    1     23577999999998775422221  1  


Q ss_pred             CeeEEecCCeEEEec-----------------cCceeeCCCCCcccee-EEEeecCCCCCCeEEEEEEcc--CCceEEEE
Q 038767           95 ARPLDSKNGWVLFEG-----------------EKNIINLPVWREFSIA-KATFSATPVSPDCVIFVIWVG--VMEISCIS  154 (336)
Q Consensus        95 ~~~~~s~~GwL~~~~-----------------T~~~~~LP~~~~~~~~-~~~~s~~p~~~~~~v~~~~~~--~~~~~~v~  154 (336)
                      .......+|.|++..                 |+++..+++++..+.. .++..     .+. ++++--.  .+....+.
T Consensus       114 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-----~~~-iyv~GG~~~~~~~~~~~  187 (308)
T 1zgk_A          114 RIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-----NRL-LYAVGGFDGTNRLNSAE  187 (308)
T ss_dssp             TCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-----TTE-EEEECCBCSSCBCCCEE
T ss_pred             ccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-----CCE-EEEEeCCCCCCcCceEE
Confidence            111222355555542                 5666666655432111 11110     111 2222110  11123457


Q ss_pred             EEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeC-----CCcEEEEEecCCceeeecCCCCcccceeeEEEeCCcEE
Q 038767          155 ICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFS-----LDAIVAFNVASQNWEILPYPPSILFMYKYLTEYDGSLL  229 (336)
Q Consensus       155 ~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~-----~g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~G~Ll  229 (336)
                      .+.+.++.|+.+...+.-.....++.++|++|++...     ...+.+||+.+++|+.+.. .|..-....++..+|+|+
T Consensus       188 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~i~  266 (308)
T 1zgk_A          188 CYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP-MKHRRSALGITVHQGRIY  266 (308)
T ss_dssp             EEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEETTEEE
T ss_pred             EEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC-CCCCccceEEEEECCEEE
Confidence            8889999999887554223345567789999999742     1479999999999998863 232112233555789999


Q ss_pred             EEEEEecC-cceEEEEeecCCCceEEecccC
Q 038767          230 ILAKVVNS-SGYRVFTLNRSQMDWFEIECLD  259 (336)
Q Consensus       230 lV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg  259 (336)
                      ++...... ..-.|+.+|.++.+|.++..|.
T Consensus       267 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  297 (308)
T 1zgk_A          267 VLGGYDGHTFLDSVECYDPDTDTWSEVTRMT  297 (308)
T ss_dssp             EECCBCSSCBCCEEEEEETTTTEEEEEEECS
T ss_pred             EEcCcCCCcccceEEEEcCCCCEEeecCCCC
Confidence            88763222 2347888899999999998776

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.34  E-value=7.4e-05  Score=66.03  Aligned_cols=108  Identities=14%  Similarity=0.176  Sum_probs=76.4

Q ss_pred             EEEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeC-----CCcEEEEEecCCceeeecCCCCcccceeeEEEeC
Q 038767          151 SCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFS-----LDAIVAFNVASQNWEILPYPPSILFMYKYLTEYD  225 (336)
Q Consensus       151 ~~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~-----~g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~  225 (336)
                      ..+..+.+.++.|+.+...+.-.....++.++|++|++...     ...+.+||+.+++|+.+.. .|........+..+
T Consensus       169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~  247 (306)
T 3ii7_A          169 NSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP-MPWKGVTVKCAAVG  247 (306)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCC-CSCCBSCCEEEEET
T ss_pred             ceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCC-CCCCccceeEEEEC
Confidence            34678899999999987544223355677789999999631     1479999999999998853 23221223455568


Q ss_pred             CcEEEEEEEecC-cceEEEEeecCCCceEEecccC
Q 038767          226 GSLLILAKVVNS-SGYRVFTLNRSQMDWFEIECLD  259 (336)
Q Consensus       226 G~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg  259 (336)
                      |+|+++...... ..-.|+.+|.++.+|.++..+.
T Consensus       248 ~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~  282 (306)
T 3ii7_A          248 SIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVR  282 (306)
T ss_dssp             TEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEE
T ss_pred             CEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcc
Confidence            999988874222 2347888899999999987654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.25  E-value=9e-05  Score=65.36  Aligned_cols=107  Identities=12%  Similarity=0.173  Sum_probs=75.0

Q ss_pred             EEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeC-----CCcEEEEEecCCceeeecCCCCcccceeeEEEeCC
Q 038767          152 CISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFS-----LDAIVAFNVASQNWEILPYPPSILFMYKYLTEYDG  226 (336)
Q Consensus       152 ~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~-----~g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~G  226 (336)
                      .+..+.+.++.|+.+...+.-.....++.++|++|++...     ...+..||+.+++|+.+... |..-....++..+|
T Consensus       174 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~r~~~~~~~~~~  252 (302)
T 2xn4_A          174 TVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADM-NMCRRNAGVCAVNG  252 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEEETT
T ss_pred             EEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCC-CCccccCeEEEECC
Confidence            4578889999999987554223345677889999999742     14799999999999988642 22112233566799


Q ss_pred             cEEEEEEEecC-cceEEEEeecCCCceEEec-ccC
Q 038767          227 SLLILAKVVNS-SGYRVFTLNRSQMDWFEIE-CLD  259 (336)
Q Consensus       227 ~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~-~Lg  259 (336)
                      +|+++...... ..-.|+.+|.++.+|.++. .|.
T Consensus       253 ~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~  287 (302)
T 2xn4_A          253 LLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMS  287 (302)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEEEECSSCCS
T ss_pred             EEEEECCcCCCcccccEEEEcCCCCeEEECCcccC
Confidence            99988764222 2345788899999999986 554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.25  E-value=0.00016  Score=64.24  Aligned_cols=104  Identities=13%  Similarity=0.199  Sum_probs=74.2

Q ss_pred             EEEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCC-----CcEEEEEecCCceeeecCCCCcccceeeEEEeC
Q 038767          151 SCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSL-----DAIVAFNVASQNWEILPYPPSILFMYKYLTEYD  225 (336)
Q Consensus       151 ~~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~-----g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~  225 (336)
                      ..+..+.+.+++|+.+...+.-.....++.++|++|++....     ..+.+||+.+++|+.+.. +|..-....++..+
T Consensus       165 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~  243 (315)
T 4asc_A          165 NKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA-FPQERSSLSLVSLV  243 (315)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC-CSSCCBSCEEEEET
T ss_pred             ceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCC-CCCcccceeEEEEC
Confidence            345888999999999875542233456778899999997431     268999999999998864 23221223456679


Q ss_pred             CcEEEEEEEec----------CcceEEEEeecCCCceEEe
Q 038767          226 GSLLILAKVVN----------SSGYRVFTLNRSQMDWFEI  255 (336)
Q Consensus       226 G~LllV~~~~~----------~~~~~V~~ld~~~~~W~~v  255 (336)
                      |+|+++.....          ...-.||.+|.++.+|.++
T Consensus       244 ~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          244 GTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             TEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             CEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence            99999987532          1124688899999999998

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=98.18  E-value=0.00012  Score=65.20  Aligned_cols=103  Identities=15%  Similarity=0.234  Sum_probs=72.8

Q ss_pred             EEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCC-----CcEEEEEecCCceeeecCCCCcccceeeEEEeCC
Q 038767          152 CISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSL-----DAIVAFNVASQNWEILPYPPSILFMYKYLTEYDG  226 (336)
Q Consensus       152 ~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~-----g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~G  226 (336)
                      .+..+.+.+++|+.+...+.-.....++.++|++|++....     ..+.+||+.+++|+.+... |..-....++..+|
T Consensus       176 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~~  254 (318)
T 2woz_A          176 RVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEF-PQERSSISLVSLAG  254 (318)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCC-SSCCBSCEEEEETT
T ss_pred             eEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCC-CCcccceEEEEECC
Confidence            45888999999999875542223455677899999997421     3688999999999988542 22112234667789


Q ss_pred             cEEEEEEEec----------CcceEEEEeecCCCceEEe
Q 038767          227 SLLILAKVVN----------SSGYRVFTLNRSQMDWFEI  255 (336)
Q Consensus       227 ~LllV~~~~~----------~~~~~V~~ld~~~~~W~~v  255 (336)
                      +|+++.....          ...-.||.+|.++.+|.++
T Consensus       255 ~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          255 SLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             EEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             EEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            9998876321          1134688899999999998

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.14  E-value=0.00015  Score=63.74  Aligned_cols=107  Identities=14%  Similarity=0.175  Sum_probs=75.2

Q ss_pred             EEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeC-----CCcEEEEEecCCceeeecCCCCcccceeeEEEeCC
Q 038767          152 CISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFS-----LDAIVAFNVASQNWEILPYPPSILFMYKYLTEYDG  226 (336)
Q Consensus       152 ~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~-----~g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~G  226 (336)
                      .+..+.+.++.|+.+...+.-.....++..+|++|++...     ...+.+||+.+++|+.+... |........+..+|
T Consensus       176 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~~  254 (301)
T 2vpj_A          176 SVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM-TTPRCYVGATVLRG  254 (301)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEEETT
T ss_pred             eEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC-CCcccceeEEEECC
Confidence            4578889999999986543222345677789999999742     14799999999999988642 22112223555689


Q ss_pred             cEEEEEEEecC-cceEEEEeecCCCceEEecccC
Q 038767          227 SLLILAKVVNS-SGYRVFTLNRSQMDWFEIECLD  259 (336)
Q Consensus       227 ~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg  259 (336)
                      +|+++...... ..-.|+.+|.++.+|.++.+|.
T Consensus       255 ~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~  288 (301)
T 2vpj_A          255 RLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMG  288 (301)
T ss_dssp             EEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEE
T ss_pred             EEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCC
Confidence            99888763222 2357888899999999997765

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.03  E-value=0.0013  Score=59.30  Aligned_cols=148  Identities=11%  Similarity=0.010  Sum_probs=88.6

Q ss_pred             EEEEEEecCCCCeeeeeeeCCcccc-ccEEEeCCeEEEEeeC------CCcEEEEEe--cCCceeeecC-CCCcccceee
Q 038767          151 SCISICRPGDTTWTELRFQDNYRYV-KNMVRADGFLYCSFFS------LDAIVAFNV--ASQNWEILPY-PPSILFMYKY  220 (336)
Q Consensus       151 ~~v~~~~~g~~~W~~~~~~~~~~~~-~d~v~~~G~~Y~l~~~------~g~i~~~Dl--~~~~~~~i~~-p~p~~~~~~~  220 (336)
                      ..+..+.+.++.|+.+...+..... ..++..+|++|++...      ...+..||+  .+.+|+.+.. |.|.......
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~  247 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGF  247 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCE
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccce
Confidence            3568899999999998765422223 5677889999999631      146888987  7778998754 2232222234


Q ss_pred             EEEeCCcEEEEEEEecC------------------cceEEEEeecCCCceEEecccCCeEEEeeCCceEEeecCCCeEEE
Q 038767          221 LTEYDGSLLILAKVVNS------------------SGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKGCAFA  282 (336)
Q Consensus       221 Lve~~G~LllV~~~~~~------------------~~~~V~~ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~a~~G~IYf  282 (336)
                      ++..+|+|+++......                  ....++.+|.++.+|.++..+..     ++... ++....|.||+
T Consensus       248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-----~r~~~-~~~~~~~~i~v  321 (357)
T 2uvk_A          248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ-----GRAYG-VSLPWNNSLLI  321 (357)
T ss_dssp             EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSS-----CCBSS-EEEEETTEEEE
T ss_pred             EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCC-----Ccccc-eeEEeCCEEEE
Confidence            67789999998864221                  11356777888999999987763     12111 11112348888


Q ss_pred             EEeccC------CcEEEecCcccccccCccccCCCcccccc
Q 038767          283 NIMHWF------GPYSYIRDQWSEFIRKPVESDSSKVAPRI  317 (336)
Q Consensus       283 ~~~~~~------~~~vy~~~~~~~~~~~~~~~~~g~~~~~~  317 (336)
                      ...+..      +..+|+             ++++++....
T Consensus       322 ~GG~~~~~~~~~~v~~l~-------------~~~~~~~~~~  349 (357)
T 2uvk_A          322 IGGETAGGKAVTDSVLIT-------------VKDNKVTVQN  349 (357)
T ss_dssp             EEEECGGGCEEEEEEEEE-------------C-CCSCEEEC
T ss_pred             EeeeCCCCCEeeeEEEEE-------------EcCcEeEeee
Confidence            774422      223567             8888876443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.98  E-value=0.00059  Score=61.58  Aligned_cols=107  Identities=11%  Similarity=0.153  Sum_probs=70.1

Q ss_pred             EEEEEecCCCCeeeeeeeC-CccccccEEEeCCeEEEEeeCC--------------------------------------
Q 038767          152 CISICRPGDTTWTELRFQD-NYRYVKNMVRADGFLYCSFFSL--------------------------------------  192 (336)
Q Consensus       152 ~v~~~~~g~~~W~~~~~~~-~~~~~~d~v~~~G~~Y~l~~~~--------------------------------------  192 (336)
                      .+..|.+.+++|+.+...+ .......++..+|++|++....                                      
T Consensus        87 ~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (357)
T 2uvk_A           87 DVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFF  166 (357)
T ss_dssp             CEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCC
T ss_pred             cEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCC
Confidence            3578889999999987654 2222344566999999997421                                      


Q ss_pred             -CcEEEEEecCCceeeecCCCCcc-cceeeEEEeCCcEEEEEEEecC--cceEEEEe--ecCCCceEEecccC
Q 038767          193 -DAIVAFNVASQNWEILPYPPSIL-FMYKYLTEYDGSLLILAKVVNS--SGYRVFTL--NRSQMDWFEIECLD  259 (336)
Q Consensus       193 -g~i~~~Dl~~~~~~~i~~p~p~~-~~~~~Lve~~G~LllV~~~~~~--~~~~V~~l--d~~~~~W~~v~~Lg  259 (336)
                       ..+.+||+.+++|+.+.. .|.. .....++..+|+|+++......  ..-+||.+  |.++.+|.++..+.
T Consensus       167 ~~~v~~yd~~~~~W~~~~~-~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~  238 (357)
T 2uvk_A          167 NKFLLSFDPSTQQWSYAGE-SPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVS  238 (357)
T ss_dssp             CCEEEEEETTTTEEEEEEE-CSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSS
T ss_pred             cccEEEEeCCCCcEEECCC-CCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCC
Confidence             379999999999998753 2221 1223466678999988764321  12345444  45889999998774

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.65  E-value=1.5e-05  Score=71.51  Aligned_cols=41  Identities=27%  Similarity=0.405  Sum_probs=36.5

Q ss_pred             cccCCCCCCcHHHHHHHHHcCCcchhccccccchhhhhccc
Q 038767           12 LERRSRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDI   52 (336)
Q Consensus        12 ~~~~~Ws~LP~dll~~Il~rLp~~dl~rfr~VCk~Wr~~~~   52 (336)
                      .+...|++||+|++..|+.+|+..|+++++.|||+|+.++.
T Consensus         4 ~~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~   44 (336)
T 2ast_B            4 FPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (336)
T ss_dssp             ---CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHT
T ss_pred             cccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence            45678999999999999999999999999999999999974

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.25  E-value=4.1e-05  Score=66.75  Aligned_cols=37  Identities=16%  Similarity=0.188  Sum_probs=34.9

Q ss_pred             CCCCCcHHHHHHHHHcCCcchhccccccchhhhhccc
Q 038767           16 SRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDI   52 (336)
Q Consensus        16 ~Ws~LP~dll~~Il~rLp~~dl~rfr~VCk~Wr~~~~   52 (336)
                      .+.+||.|++..|+..|+++|+.++..|||.||.++.
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~   40 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVR   40 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHT
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence            3678999999999999999999999999999999996

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.11  E-value=0.00014  Score=70.42  Aligned_cols=38  Identities=18%  Similarity=0.391  Sum_probs=29.7

Q ss_pred             cCCCCCCcHHHHHHHHHcCC-cchhccccccchhhhhcc
Q 038767           14 RRSRSDLPLTIINLIVSRLY-VVYQIRFRAVCKRWRSVD   51 (336)
Q Consensus        14 ~~~Ws~LP~dll~~Il~rLp-~~dl~rfr~VCk~Wr~~~   51 (336)
                      ...|++||+|++..|+.+|| ..|+.+++.|||+|+.+.
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~   41 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIE   41 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHH
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence            45699999999999999998 999999999999999873

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.07  E-value=0.0049  Score=61.06  Aligned_cols=105  Identities=13%  Similarity=0.047  Sum_probs=72.5

Q ss_pred             EEEEEecCCCCeeeee-ee-----CCccccccEEEe--CCeEEEEeeCC------CcEEEEEecCCceeeecCCCCcccc
Q 038767          152 CISICRPGDTTWTELR-FQ-----DNYRYVKNMVRA--DGFLYCSFFSL------DAIVAFNVASQNWEILPYPPSILFM  217 (336)
Q Consensus       152 ~v~~~~~g~~~W~~~~-~~-----~~~~~~~d~v~~--~G~~Y~l~~~~------g~i~~~Dl~~~~~~~i~~p~p~~~~  217 (336)
                      .+..+.+.++.|+.+. ..     +.-.....++..  +|++|+++...      ..+..||+.+++|+.+.. +|..-.
T Consensus       413 ~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~-~p~~R~  491 (695)
T 2zwa_A          413 EILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKS-LSHTRF  491 (695)
T ss_dssp             CEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCC-CSBCCB
T ss_pred             cEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCC-CCCCcc
Confidence            3577888899999987 31     111234556777  99999996421      368999999999998853 232111


Q ss_pred             eeeEEE-eCCcEEEEEEEecCcceEEEEeecCCCceEEecccC
Q 038767          218 YKYLTE-YDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLD  259 (336)
Q Consensus       218 ~~~Lve-~~G~LllV~~~~~~~~~~V~~ld~~~~~W~~v~~Lg  259 (336)
                      ....+. .+|+|+++... .... .|+.+|.++.+|.++...|
T Consensus       492 ~h~~~~~~~~~iyv~GG~-~~~~-~v~~yd~~t~~W~~~~~~g  532 (695)
T 2zwa_A          492 RHSACSLPDGNVLILGGV-TEGP-AMLLYNVTEEIFKDVTPKD  532 (695)
T ss_dssp             SCEEEECTTSCEEEECCB-CSSC-SEEEEETTTTEEEECCCSS
T ss_pred             cceEEEEcCCEEEEECCC-CCCC-CEEEEECCCCceEEccCCC
Confidence            223444 38999988774 3233 7888899999999998754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.94  E-value=0.03  Score=55.45  Aligned_cols=104  Identities=13%  Similarity=0.046  Sum_probs=66.7

Q ss_pred             EEEEEecCCCCeeeeeeeCCcc---ccccEEEeC---CeEEEEeeC-------CCcEEEEEecCCc------eeeecCCC
Q 038767          152 CISICRPGDTTWTELRFQDNYR---YVKNMVRAD---GFLYCSFFS-------LDAIVAFNVASQN------WEILPYPP  212 (336)
Q Consensus       152 ~v~~~~~g~~~W~~~~~~~~~~---~~~d~v~~~---G~~Y~l~~~-------~g~i~~~Dl~~~~------~~~i~~p~  212 (336)
                      .+..|.+.++.|+.+.....++   ....++.++   |++|+++..       ...+.+||+.++.      |+.+...+
T Consensus       514 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p  593 (695)
T 2zwa_A          514 AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP  593 (695)
T ss_dssp             SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG
T ss_pred             CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC
Confidence            4588899999999887522122   233434445   899999742       1469999999988      77765411


Q ss_pred             CcccceeeEEEeC-CcEEEEEEEecC----cceEEEEeecCCCceEEe
Q 038767          213 SILFMYKYLTEYD-GSLLILAKVVNS----SGYRVFTLNRSQMDWFEI  255 (336)
Q Consensus       213 p~~~~~~~Lve~~-G~LllV~~~~~~----~~~~V~~ld~~~~~W~~v  255 (336)
                      +..-.....+..+ |+|+++......    ..-.|+.+|.++.+|..+
T Consensus       594 ~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~  641 (695)
T 2zwa_A          594 LFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSI  641 (695)
T ss_dssp             GGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEEC
T ss_pred             CCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEe
Confidence            1111122344556 999988764221    234678889999999965

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.56  E-value=0.0006  Score=63.42  Aligned_cols=36  Identities=22%  Similarity=0.241  Sum_probs=33.9

Q ss_pred             CCCCcHHHHHHHHHcCCcchhccccccchhhhhccc
Q 038767           17 RSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDI   52 (336)
Q Consensus        17 Ws~LP~dll~~Il~rLp~~dl~rfr~VCk~Wr~~~~   52 (336)
                      ++.||+||+..|+..|+..+|+++..|||.|+.++.
T Consensus        15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~   50 (464)
T 3v7d_B           15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR   50 (464)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHT
T ss_pred             hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence            678999999999999999999999999999999873

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.51  E-value=0.0008  Score=62.38  Aligned_cols=38  Identities=21%  Similarity=0.246  Sum_probs=35.2

Q ss_pred             CCCCCCcHHHHHHHHHcCCcchhccccccchhhhhccc
Q 038767           15 RSRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDI   52 (336)
Q Consensus        15 ~~Ws~LP~dll~~Il~rLp~~dl~rfr~VCk~Wr~~~~   52 (336)
                      ...+.||+|++..|+..|+..|+.++..|||.|+.++.
T Consensus        17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~   54 (445)
T 2ovr_B           17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAE   54 (445)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHT
T ss_pred             ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcC
Confidence            34789999999999999999999999999999999874

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=95.99  E-value=0.047  Score=53.51  Aligned_cols=128  Identities=9%  Similarity=-0.039  Sum_probs=77.1

Q ss_pred             EecCCCCeeeeeeeCCccccccEEEe--CCeEEEEeeCC-----------CcEEEEEecCCceeeecC-CCCcc-cceee
Q 038767          156 CRPGDTTWTELRFQDNYRYVKNMVRA--DGFLYCSFFSL-----------DAIVAFNVASQNWEILPY-PPSIL-FMYKY  220 (336)
Q Consensus       156 ~~~g~~~W~~~~~~~~~~~~~d~v~~--~G~~Y~l~~~~-----------g~i~~~Dl~~~~~~~i~~-p~p~~-~~~~~  220 (336)
                      +.+..++|+.+...+.  ....+++.  +|++|++....           ..+..||+.+++|+.+.. |.+.. +....
T Consensus       171 ~dp~~~~W~~~~~~P~--~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~  248 (656)
T 1k3i_A          171 PQPGLGRWGPTIDLPI--VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGI  248 (656)
T ss_dssp             CCTTSCEEEEEEECSS--CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEE
T ss_pred             CCCCCCeeeeeccCCC--CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccc
Confidence            3466789998765542  22244444  99999996321           158899999999987643 22222 12122


Q ss_pred             EEEeCCcEEEEEEEecCcceEEEEeecCCCceEEecccCCeEEEeeCCceEEeecC-CCeEEEEEec-c-----CCcEEE
Q 038767          221 LTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVE-KGCAFANIMH-W-----FGPYSY  293 (336)
Q Consensus       221 Lve~~G~LllV~~~~~~~~~~V~~ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~a~-~G~IYf~~~~-~-----~~~~vy  293 (336)
                      .+..+|+|+++... ...  .|+.+|.++.+|+++..|..     ++.. .++... .|.||..... .     .+..+|
T Consensus       249 ~~~~~g~lyv~GG~-~~~--~v~~yd~~t~~W~~~~~~~~-----~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~y  319 (656)
T 1k3i_A          249 SMDGNGQIVVTGGN-DAK--KTSLYDSSSDSWIPGPDMQV-----ARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVY  319 (656)
T ss_dssp             EECTTSCEEEECSS-STT--CEEEEEGGGTEEEECCCCSS-----CCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred             cCCCCCCEEEeCCC-CCC--ceEEecCcCCceeECCCCCc-----cccc-cceEEecCCeEEEEeCcccCCcccccceEe
Confidence            33457999888763 223  57777988899999987763     2221 122223 3588887641 1     234578


Q ss_pred             e
Q 038767          294 I  294 (336)
Q Consensus       294 ~  294 (336)
                      |
T Consensus       320 d  320 (656)
T 1k3i_A          320 S  320 (656)
T ss_dssp             E
T ss_pred             C
Confidence            8

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=95.98  E-value=0.087  Score=51.57  Aligned_cols=104  Identities=11%  Similarity=0.129  Sum_probs=68.8

Q ss_pred             EEEEEEecCCCCeeeeeeeCCcc--ccccEE-EeCCeEEEEeeC-CCcEEEEEecCCceeeecCCCCcccceeeEEEe-C
Q 038767          151 SCISICRPGDTTWTELRFQDNYR--YVKNMV-RADGFLYCSFFS-LDAIVAFNVASQNWEILPYPPSILFMYKYLTEY-D  225 (336)
Q Consensus       151 ~~v~~~~~g~~~W~~~~~~~~~~--~~~d~v-~~~G~~Y~l~~~-~g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~-~  225 (336)
                      ..+..|.+..++|+.+...+.-.  +...++ ..+|++|++... ...+..||+.+++|+.+.. +|..-...-.+.. +
T Consensus       219 ~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~-~~~~R~~~s~~~~~d  297 (656)
T 1k3i_A          219 TLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPD-MQVARGYQSSATMSD  297 (656)
T ss_dssp             EEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCC-CSSCCSSCEEEECTT
T ss_pred             EEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCC-CCccccccceEEecC
Confidence            45788999999999877553211  222333 478999999753 1479999999999998753 2321112234555 8


Q ss_pred             CcEEEEEEEecC--cceEEEEeecCCCceEEe
Q 038767          226 GSLLILAKVVNS--SGYRVFTLNRSQMDWFEI  255 (336)
Q Consensus       226 G~LllV~~~~~~--~~~~V~~ld~~~~~W~~v  255 (336)
                      |+|+++.....+  ..-.++..|.++.+|.++
T Consensus       298 g~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          298 GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             SCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred             CeEEEEeCcccCCcccccceEeCCCCCcceeC
Confidence            999988773221  123455668888999997

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.91  E-value=0.0021  Score=62.04  Aligned_cols=35  Identities=17%  Similarity=0.277  Sum_probs=32.7

Q ss_pred             CCCCcHHHHHHHHHcC-Ccchhccccccchhhhhcc
Q 038767           17 RSDLPLTIINLIVSRL-YVVYQIRFRAVCKRWRSVD   51 (336)
Q Consensus        17 Ws~LP~dll~~Il~rL-p~~dl~rfr~VCk~Wr~~~   51 (336)
                      .++||+|++..|+.+| +.+|+.+++.|||+|+.+.
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            4689999999999999 8999999999999999875

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=95.86  E-value=0.0017  Score=59.99  Aligned_cols=36  Identities=31%  Similarity=0.371  Sum_probs=33.3

Q ss_pred             CCCCcHH----HHHHHHHcCCcchhccccccchhhhhccc
Q 038767           17 RSDLPLT----IINLIVSRLYVVYQIRFRAVCKRWRSVDI   52 (336)
Q Consensus        17 Ws~LP~d----ll~~Il~rLp~~dl~rfr~VCk~Wr~~~~   52 (336)
                      .+.||+|    |+..||..|+..||.++..|||+|+.++.
T Consensus        11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~   50 (435)
T 1p22_A           11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTS   50 (435)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence            4679999    99999999999999999999999998873

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=87.30  E-value=8.9  Score=33.40  Aligned_cols=124  Identities=12%  Similarity=0.098  Sum_probs=68.4

Q ss_pred             ccEEEe-CCe-EEEEeeCCCcEEEEEecCCceeeecCC--CCcccc-eeeE-EEeCCcEEEEEEEec-CcceEEEEeecC
Q 038767          176 KNMVRA-DGF-LYCSFFSLDAIVAFNVASQNWEILPYP--PSILFM-YKYL-TEYDGSLLILAKVVN-SSGYRVFTLNRS  248 (336)
Q Consensus       176 ~d~v~~-~G~-~Y~l~~~~g~i~~~Dl~~~~~~~i~~p--~p~~~~-~~~L-ve~~G~LllV~~~~~-~~~~~V~~ld~~  248 (336)
                      ..+++. +|+ +|+.+...+.|.+||+.+..++.+...  .+.... ...+ +.-+|+.+.+.. .. ...+.||.+|.+
T Consensus       214 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~-~~~~~~i~v~~~~~~  292 (361)
T 3scy_A          214 RHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASN-RLKADGVAIFKVDET  292 (361)
T ss_dssp             EEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEE-CSSSCEEEEEEECTT
T ss_pred             eEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEEC-CCCCCEEEEEEEcCC
Confidence            345553 665 677664337899999987655433210  111111 1223 334788766655 24 467999999976


Q ss_pred             CCceEEecccCCeEEEeeCC-ceEEeecCCC-eEEEEEeccCCcEEEecCcccccccCccccCCCcccccc
Q 038767          249 QMDWFEIECLDDRALFMGAS-CLWWVPVEKG-CAFANIMHWFGPYSYIRDQWSEFIRKPVESDSSKVAPRI  317 (336)
Q Consensus       249 ~~~W~~v~~Lg~~alFlg~~-~s~~~~a~~G-~IYf~~~~~~~~~vy~~~~~~~~~~~~~~~~~g~~~~~~  317 (336)
                      ..++..+..+..     |.. ..++++ ..| .+|..........+|..|           .++|+.....
T Consensus       293 ~g~~~~~~~~~~-----g~~~~~~~~s-pdg~~l~~~~~~~~~v~v~~~d-----------~~~g~~~~~~  346 (361)
T 3scy_A          293 NGTLTKVGYQLT-----GIHPRNFIIT-PNGKYLLVACRDTNVIQIFERD-----------QATGLLTDIK  346 (361)
T ss_dssp             TCCEEEEEEEEC-----SSCCCEEEEC-TTSCEEEEEETTTTEEEEEEEC-----------TTTCCEEECS
T ss_pred             CCcEEEeeEecC-----CCCCceEEEC-CCCCEEEEEECCCCCEEEEEEE-----------CCCCcEeecc
Confidence            666666544331     221 122222 246 688876444556787611           5577766554

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=80.86  E-value=26  Score=30.04  Aligned_cols=69  Identities=16%  Similarity=0.096  Sum_probs=40.5

Q ss_pred             EEE-eCCeEEEEeeC--CCcEEEEEecCCceeeecCCCCcccceeeEE-EeCCcEEEEEEEecCcceEEEEeec
Q 038767          178 MVR-ADGFLYCSFFS--LDAIVAFNVASQNWEILPYPPSILFMYKYLT-EYDGSLLILAKVVNSSGYRVFTLNR  247 (336)
Q Consensus       178 ~v~-~~G~~Y~l~~~--~g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lv-e~~G~LllV~~~~~~~~~~V~~ld~  247 (336)
                      +++ -+|++|+.+..  .+.|.++|+.+...+.+.........-..+. .-+|+.+.+.. ..+..+.||.++.
T Consensus        45 ~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~-~~~~~v~v~~~~~  117 (347)
T 3hfq_A           45 LALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSAN-YHKGTAEVMKIAA  117 (347)
T ss_dssp             EEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEE-TTTTEEEEEEECT
T ss_pred             EEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEe-CCCCEEEEEEeCC
Confidence            444 37889988762  1689999997766554432100111112343 44788666655 3456788888865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	336
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.13
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.12
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.49
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	97.38
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	97.33
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.54
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.31
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	92.17

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.9e-11  Score=72.32  Aligned_cols=36  Identities=28%  Similarity=0.455  Sum_probs=34.6

Q ss_pred             CCCCcHHHHHHHHHcCCcchhccccccchhhhhccc
Q 038767           17 RSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDI   52 (336)
Q Consensus        17 Ws~LP~dll~~Il~rLp~~dl~rfr~VCk~Wr~~~~   52 (336)
                      |+.||+|++..|+..||.+|++|++.|||+|+.++.
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            789999999999999999999999999999999875

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=1.8e-07  Score=67.30  Aligned_cols=36  Identities=22%  Similarity=0.241  Sum_probs=33.6

Q ss_pred             CCCCcHHHHHHHHHcCCcchhccccccchhhhhccc
Q 038767           17 RSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDI   52 (336)
Q Consensus        17 Ws~LP~dll~~Il~rLp~~dl~rfr~VCk~Wr~~~~   52 (336)
                      .+.||+||+..|++.|+..|+++++.|||+|+.++.
T Consensus         6 ~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~   41 (100)
T d1nexb1           6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR   41 (100)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHH
T ss_pred             hhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            467999999999999999999999999999999874

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=3.4e-07  Score=65.98  Aligned_cols=36  Identities=22%  Similarity=0.289  Sum_probs=34.4

Q ss_pred             CCCCcHHHHHHHHHcCCcchhccccccchhhhhccc
Q 038767           17 RSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDI   52 (336)
Q Consensus        17 Ws~LP~dll~~Il~rLp~~dl~rfr~VCk~Wr~~~~   52 (336)
                      .+.||+||+..|+..|++.|++++++|||.|+.++.
T Consensus        19 i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~   54 (102)
T d2ovrb1          19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAE   54 (102)
T ss_dssp             TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHT
T ss_pred             hhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC
Confidence            578999999999999999999999999999999985

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=1.1e-05  Score=59.30  Aligned_cols=35  Identities=31%  Similarity=0.376  Sum_probs=32.1

Q ss_pred             CCCc----HHHHHHHHHcCCcchhccccccchhhhhccc
Q 038767           18 SDLP----LTIINLIVSRLYVVYQIRFRAVCKRWRSVDI   52 (336)
Q Consensus        18 s~LP----~dll~~Il~rLp~~dl~rfr~VCk~Wr~~~~   52 (336)
                      +.||    +||+..|++.|++.|++++..|||.|+.++.
T Consensus        12 ~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~   50 (118)
T d1p22a1          12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTS   50 (118)
T ss_dssp             HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHH
T ss_pred             HHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Confidence            4577    5999999999999999999999999999985

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.0085  Score=49.59  Aligned_cols=107  Identities=11%  Similarity=0.136  Sum_probs=72.0

Q ss_pred             EEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCC-----CcEEEEEecCCceeeecCCCCcccceeeEEEeCC
Q 038767          152 CISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSL-----DAIVAFNVASQNWEILPYPPSILFMYKYLTEYDG  226 (336)
Q Consensus       152 ~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~-----g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~G  226 (336)
                      .+..+.+..+.|......+........+..++++|.+....     .....+|+.+.+|..+... |..-....++..+|
T Consensus       165 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~r~~~~~~~~~~  243 (288)
T d1zgka1         165 SAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM-KHRRSALGITVHQG  243 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC-SSCCBSCEEEEETT
T ss_pred             eEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCc-cCcccceEEEEECC
Confidence            34677888888987664432222445677899999886321     3678999999999887532 22112234666799


Q ss_pred             cEEEEEEEecC-cceEEEEeecCCCceEEecccC
Q 038767          227 SLLILAKVVNS-SGYRVFTLNRSQMDWFEIECLD  259 (336)
Q Consensus       227 ~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg  259 (336)
                      +|+++...... ..=.||.+|.++.+|.++..|.
T Consensus       244 ~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  277 (288)
T d1zgka1         244 RIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMT  277 (288)
T ss_dssp             EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS
T ss_pred             EEEEEecCCCCeecceEEEEECCCCEEEECCCCC
Confidence            99988763222 2224677799999999998886

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.022  Score=46.89  Aligned_cols=145  Identities=9%  Similarity=0.017  Sum_probs=86.4

Q ss_pred             EEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCC-----CcEEEEEecCCceeeecCCCCcccceeeEEEeCCc
Q 038767          153 ISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSL-----DAIVAFNVASQNWEILPYPPSILFMYKYLTEYDGS  227 (336)
Q Consensus       153 v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~-----g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~G~  227 (336)
                      ...+.+..+.|......+........+..++++|......     ..+..+|+..+.|.....+. ......-.+..+|.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~  197 (288)
T d1zgka1         119 VERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN-TIRSGAGVCVLHNC  197 (288)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEETTE
T ss_pred             eeeeccccCccccccccccccccceeeeeeecceEecCcccccccceEEEeeccccccccccccc-cccccccccceeee
Confidence            3567778888987654432223445567788888875321     47899999988888765422 11122334556788


Q ss_pred             EEEEEEEecC-cceEEEEeecCCCceEEecccCCeEEEeeCCceEEeecCCCeEEEEEec-----cCCcEEEecCccccc
Q 038767          228 LLILAKVVNS-SGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKGCAFANIMH-----WFGPYSYIRDQWSEF  301 (336)
Q Consensus       228 LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~a~~G~IYf~~~~-----~~~~~vy~~~~~~~~  301 (336)
                      +++....... ..-.++..|..+.+|..+..+...    -.+++.+  ...|.||+....     ..+..+||       
T Consensus       198 i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~----r~~~~~~--~~~~~l~v~GG~~~~~~~~~v~~yd-------  264 (288)
T d1zgka1         198 IYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR----RSALGIT--VHQGRIYVLGGYDGHTFLDSVECYD-------  264 (288)
T ss_dssp             EEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC----CBSCEEE--EETTEEEEECCBCSSCBCCEEEEEE-------
T ss_pred             EEEecCccccccccceeeeeecceeeecccCccCc----ccceEEE--EECCEEEEEecCCCCeecceEEEEE-------
Confidence            8776653222 234667778889999998765421    0011111  123478876422     12345888       


Q ss_pred             ccCccccCCCcccccc
Q 038767          302 IRKPVESDSSKVAPRI  317 (336)
Q Consensus       302 ~~~~~~~~~g~~~~~~  317 (336)
                            .+.++|+.+.
T Consensus       265 ------~~~~~W~~~~  274 (288)
T d1zgka1         265 ------PDTDTWSEVT  274 (288)
T ss_dssp             ------TTTTEEEEEE
T ss_pred             ------CCCCEEEECC
Confidence                  7887777654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.54  E-value=0.075  Score=45.51  Aligned_cols=108  Identities=11%  Similarity=0.040  Sum_probs=68.4

Q ss_pred             eEEEEEEecCCCCeeeeeeeCC--ccc-cccEEEeCCeEEEEeeCC-CcEEEEEecCCceeeecCCCCcccceeeEEEeC
Q 038767          150 ISCISICRPGDTTWTELRFQDN--YRY-VKNMVRADGFLYCSFFSL-DAIVAFNVASQNWEILPYPPSILFMYKYLTEYD  225 (336)
Q Consensus       150 ~~~v~~~~~g~~~W~~~~~~~~--~~~-~~d~v~~~G~~Y~l~~~~-g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~  225 (336)
                      ...+.+|.+.++.|+.......  ..+ ....+..+|++|+..... ..+.+||+.++.|+.+...+.........+-.+
T Consensus        51 ~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~d  130 (387)
T d1k3ia3          51 ITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD  130 (387)
T ss_dssp             EEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT
T ss_pred             eeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecC
Confidence            4456789999999987654321  112 233456799999987431 479999999999987754221111222233347


Q ss_pred             CcEEEEEEEecC--cceEEEEeecCCCceEEecc
Q 038767          226 GSLLILAKVVNS--SGYRVFTLNRSQMDWFEIEC  257 (336)
Q Consensus       226 G~LllV~~~~~~--~~~~V~~ld~~~~~W~~v~~  257 (336)
                      |+++++......  ..-.++..|..+.+|..+..
T Consensus       131 G~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~  164 (387)
T d1k3ia3         131 GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPN  164 (387)
T ss_dssp             SCEEEECCCCCSSSCCCCEEEEETTTTEEEEETT
T ss_pred             CceeeeccccccccccceeeeecCCCCceeecCC
Confidence            999888763222  11245566888999998754

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.31  E-value=0.056  Score=46.39  Aligned_cols=99  Identities=8%  Similarity=0.031  Sum_probs=61.2

Q ss_pred             cCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCC-----C------cEEEEEecCCceeeecC-CCCcc-cceeeEEEe
Q 038767          158 PGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSL-----D------AIVAFNVASQNWEILPY-PPSIL-FMYKYLTEY  224 (336)
Q Consensus       158 ~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~-----g------~i~~~Dl~~~~~~~i~~-p~p~~-~~~~~Lve~  224 (336)
                      |..++|+.....+..+....++..+|++|++....     +      .+.+||+.+++|+.+.. +.|.. ......+..
T Consensus         6 p~~g~W~~~~~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~   85 (387)
T d1k3ia3           6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG   85 (387)
T ss_dssp             TTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT
T ss_pred             CCCCccCCcCCCCccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec
Confidence            45678987654332222233445699999986420     1      36789999999976432 12222 233345556


Q ss_pred             CCcEEEEEEEecCcceEEEEeecCCCceEEecccC
Q 038767          225 DGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLD  259 (336)
Q Consensus       225 ~G~LllV~~~~~~~~~~V~~ld~~~~~W~~v~~Lg  259 (336)
                      +|+++++.. ......++|  |..+..|.+..++.
T Consensus        86 ~g~i~v~Gg-~~~~~~~~y--d~~~~~w~~~~~~~  117 (387)
T d1k3ia3          86 NGQIVVTGG-NDAKKTSLY--DSSSDSWIPGPDMQ  117 (387)
T ss_dssp             TSCEEEECS-SSTTCEEEE--EGGGTEEEECCCCS
T ss_pred             CCcEEEeec-CCCcceeEe--cCccCccccccccc
Confidence            888877664 233455555  88889999988776

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.17  E-value=0.7  Score=38.03  Aligned_cols=74  Identities=12%  Similarity=-0.013  Sum_probs=48.8

Q ss_pred             ccEEEe--CCeEEEEeeCCCcEEEEEecCCceeeecCCCCcccceeeEEEeCCcEEEEEEEecCcceEEEEeecCCCceE
Q 038767          176 KNMVRA--DGFLYCSFFSLDAIVAFNVASQNWEILPYPPSILFMYKYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWF  253 (336)
Q Consensus       176 ~d~v~~--~G~~Y~l~~~~g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~G~LllV~~~~~~~~~~V~~ld~~~~~W~  253 (336)
                      +..++.  +|.|||++...++|+.+|+.+...+....|...   .......+|.|++...   .   .++++|.++.+.+
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~---~~i~~~~dg~l~va~~---~---gl~~~d~~tg~~~   91 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMG---SALAKISDSKQLIASD---D---GLFLRDTATGVLT   91 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCE---EEEEEEETTEEEEEET---T---EEEEEETTTCCEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCCc---EEEEEecCCCEEEEEe---C---ccEEeecccceee
Confidence            556664  789999986437999999998876665544211   1223446788876532   1   4777888877777


Q ss_pred             Eeccc
Q 038767          254 EIECL  258 (336)
Q Consensus       254 ~v~~L  258 (336)
                      .+..+
T Consensus        92 ~l~~~   96 (295)
T d2ghsa1          92 LHAEL   96 (295)
T ss_dssp             EEECS
T ss_pred             EEeee
Confidence            66444