Citrus Sinensis ID: 038791

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680---

MAATTINNLPDRYARAELAVFSQPEVPLAGEGHAHLHHAPRQRAIPAHDPYLFQIGHGPGHFQPLSVGPPLAHASHALRSSPTRPPLTSGLPVNHVSHHLLSDTVTLEILLPQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAHEHFMMFFTRMPNVRDVQLREDYYPAPADDSTTEMREDSHRRFEDAMNRRRIAD

ccccccccccHHHHHHHHHccccccccccccccEEEEcccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccEEEccccccccccccHHcHHHHHHccccccEEEEEcccccccccHHHHHHccccccccccccEEcccccccccHHHHHHHHHccccccEEEccccccccccccccHHHHHHHHHccccccEEEEccccccccccccccccccccccccccHHHHHHHHHccccccEEEEcccccccccHHHHHHHHHccccccEEEccccccccccHHcccccccccccccEEEccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHccccccEEEccccccccHHHHHHHHcccccccccccHHHHHHHHccccccccccccccccccHHHHcccccccccHHHHHHcccccccccccccccccccEEEEEEcccccccccccccccccccccccccccEEEccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHEEEEccHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccc

cccHHHHcccccccHHHHHHHHHHHHHHHHHHccEEEEcccccHHccccccHHHccccccccccccccccccccccccccccccHHHHHHccccccEEEEccccHHHHHHccccccccEEEEEEEcccccccccccHHHHHHHcHcccEEccccEEEccccHHHHHHHcHHHHHHHHHHccccccccccccHHHHHHHHHHcccccEEEEEEcccccHHccccHHHHHHHHHcccccEEEEEEcccccccccccccHcccccccccccHHHHHHHHHccccHHEEEEcccccccccHHHHHHHHHcccccEEEEEccccccccccccccccHHHcHcccEEEccccccccHHHHHHHHcccccccEEEEcccccccHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHHcHHHHHccEEEEcccccccHHcccccccccccccccccccccccHHHcEEEEcccccEEEEcccccccccHHHHHHHHEEEcHHHHccHHHHcccccccccEEEEEEEEcccccccccccccccHHHHccccHHHEEEEccHHHEEEEcccccccccccHHHHHHHHcccccccHEcccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHccccccccccccHHcHHHHHHHHHHHHcccccc

maattinnlpDRYARAElavfsqpevplageghahlhhaprqraipahdpylfqighgpghfqplsvgpplahashalrssptrppltsglpvnhvshhllsdtVTLEillpqwpglrhvkLVRWHqrlqaplgaefiplfehceclksidlsnfyfwtedlppvlraypeksanltCLNLLTTSFTEGFKAQEIREITAACPSLNKLLvactfdpryigfvndetlsaiatncpkltllhlvdtsslanergdpdsdgftaedasvSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWqldgvslcggleslsikncgdlsdmGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCvwdgleltesseskvrsfdlnelndeddelglrkkrkfclpeggnwhlqikengvccktwkglkCLSIWIEVGqlltplpivglddcpvLEEIRIKmegdsrgrqkpsdrafglscltrypqLTKLRLEFGETIGyaltapggetdltlWDRFFFngignlrlneldywpaqdrdvnqrsltlpasglIAQCLTLRKLIIHGTAHEHFMMFFtrmpnvrdvqlredyypapaddsttemrEDSHRRFEDAMNRRRIAD

maattinnlpdryARAELAVFSQPEVPLAGEGHAHLHHAPRQRAIPAHDPYLFQIGHGPGHFQPLSVGPPLAHASHALRSSPTRPPLTSGLPVNHVSHHLLSDTVTLEILLPQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFElegcknvtvdglRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVwdgleltesseskvrsfdlnelndeddelglRKKRKFClpeggnwhlqikENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIkmegdsrgrqkpsdrafglscltrYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAHEHFMMFFTRMPNVRDVQLREDYypapaddsttemredshrrfedamnrrriad

MAATTINNLPDRYARAELAVFSQPEVPlageghahlhhaPRQRAIPAHDPYLFQIGHGPGHFQPLSVGPPLAHASHALRSSPTRPPLTSGLPVNHVSHHLLSDTVTLEILLPQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPvlevlkskcsslkvlklGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESKVRSFdlnelndeddelGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAHEHFMMFFTRMPNVRDVQLREDYYPAPADDSTTEMREDSHRRFEDAMNRRRIAD

***************AELAVF**********************AIPAHDPYLFQIGHGPGHF*****************************PVNHVSHHLLSDTVTLEILLPQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDT************************EGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLEL************************LRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIK**************AFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAHEHFMMFFTRMPNVRDVQLREDY*******************************

**ATTINNLPDRYARAELAVFSQPEVPLAGEGHAHLHHAPRQRAIPAHDPYLFQIGHGPGHFQPLSVGPPLAHASHALRSSPTRPPLTSGLPVNHVSHHLLSDTVTLEILLPQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAHEHFMMFFTRMPNVRDVQLREDYYPAPADDSTTEMREDSHRRFEDAMNRR****

MAATTINNLPDRYARAELAVFSQPEVPLAGEGHAHLHHAPRQRAIPAHDPYLFQIGHGPGHFQPLSVGPPLAHASHALRSSPTRPPLTSGLPVNHVSHHLLSDTVTLEILLPQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKME*********SDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAHEHFMMFFTRMPNVRDVQLREDYYPAPA**************FEDAMNRRRIAD

*****INNLPDRYARAELAVFSQPEVPLAGEGHAHLHHAPRQRAIPAHDPYLFQIGHGPGHFQPLSVGPPLAHASHALRSSPTRPPLTSGLPVNHVSHHLLSDTVTLEILLPQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAHEHFMMFFTRMPNVRDVQLREDYYPAPAD**TT****DSHRRFEDAMNRR****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		683	2.2.26 [Sep-21-2011]
Q9SIM9		693	F-box protein ORE9 OS=Ara	yes	no	0.979	0.965	0.537	0.0
Q5VMP0		720	F-box/LRR-repeat MAX2 hom	yes	no	0.818	0.776	0.474	1e-144
Q9C5D2		610	F-box/LRR-repeat protein	no	no	0.386	0.432	0.247	4e-06
Q96IG2		436	F-box/LRR-repeat protein	yes	no	0.212	0.332	0.279	3e-05
Q58DG6		436	F-box/LRR-repeat protein	yes	no	0.212	0.332	0.279	3e-05
Q9CZV8		436	F-box/LRR-repeat protein	yes	no	0.212	0.332	0.279	5e-05
P34284		466	Uncharacterized F-box/LRR	yes	no	0.310	0.454	0.246	0.0001
Q9QZH7		276	F-box/LRR-repeat protein	yes	no	0.212	0.525	0.285	0.0001

>sp\|Q9SIM9\|ORE9_ARATH F-box protein ORE9 OS=Arabidopsis thaliana GN=ORE9 PE=1 SV=2	Back alignment and function desciption

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/707 (53%), Positives = 482/707 (68%), Gaps = 38/707 (5%)

Query: 1   MAATTINNLPD------------RYARAELAVFSQPEVPLAGEGHAHLHHAPRQRAIPAH 48
           MA+TT+++LPD              AR  L++ S   + L     +HL      R +   
Sbjct: 1   MASTTLSDLPDVILSTISSLVSDSRARNSLSLVSHKFLALERSTRSHLTIRGNARDLSLV 60

Query: 49  DPYLFQIGHGPGHF-----QPLSVGPPLAHASH-ALRSSPTRPPLTSGLPVNHVSHHLLS 102
                 I H    F       L    P+ H +  ALR       L    P     +    
Sbjct: 61  PDCFRSISHLDLSFLSPWGHTLLASLPIDHQNLLALR-------LKFCFPFVESLNVYTR 113

Query: 103 DTVTLEILLPQWPGLRHVKLVRWHQRL-QAPLGAEFIPLFEHCE-CLKSIDLSNFYFWTE 160
              +LE+LLPQWP +RH+KL+RWHQR  Q P G +F+P+FEHC   L+S+DLSNFY WTE
Sbjct: 114 SPSSLELLLPQWPRIRHIKLLRWHQRASQIPTGGDFVPIFEHCGGFLESLDLSNFYHWTE 173

Query: 161 DLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIG 220
           DLPPVL  Y + +A LT L+LLT SFTEG+K+ EI  IT +CP+L    VACTFDPRY  
Sbjct: 174 DLPPVLLRYADVAARLTRLDLLTASFTEGYKSSEIVSITKSCPNLKTFRVACTFDPRYFE 233

Query: 221 FVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLP 280
           FV DETLSA+AT+ PKLTLLH+VDT+SLAN R  P   G  A D++V+   LI++FSGLP
Sbjct: 234 FVGDETLSAVATSSPKLTLLHMVDTASLANPRAIP---GTEAGDSAVTAGTLIEVFSGLP 290

Query: 281 LLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQ-LDGVSLCGGLE 339
            LEELVLDV K+V+ SG  LE L SKC  L+VLKLGQF GVC A  W+ LDGV+LCGGL+
Sbjct: 291 NLEELVLDVGKDVKHSGVALEALNSKCKKLRVLKLGQFQGVCSATEWRRLDGVALCGGLQ 350

Query: 340 SLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCC 399
           SLSIKN GDL+DMGLVAIGRGC +L  FE++GC+NVTVDGLRTM +LR +TL +++ISCC
Sbjct: 351 SLSIKNSGDLTDMGLVAIGRGCCKLTTFEIQGCENVTVDGLRTMVSLRSKTLTDVRISCC 410

Query: 400 KQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRK 459
           K L   AS KA++ + DRI++LHIDCVW G E  E  E +V +   +E + E+++ G  +
Sbjct: 411 KNLDTAASLKAIEPICDRIKRLHIDCVWSGSE-DEEVEGRVET---SEADHEEEDDGYER 466

Query: 460 KRKFCLPEGGNWHLQIKE-NGVCC--KTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLE 516
            +K C       H    + NG C   + W+ L+ LS+WI VG+ LTPLP+ GLDDCP LE
Sbjct: 467 SQKRCKYSFEEEHCSTSDVNGFCSEDRVWEKLEYLSLWINVGEFLTPLPMTGLDDCPNLE 526

Query: 517 EIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWD 576
           EIRIK+EGD RG+++P++  FGLSCL  YP+L+K++L+ G+TIG+ALTAP  + DL+LW+
Sbjct: 527 EIRIKIEGDCRGKRRPAEPEFGLSCLALYPKLSKMQLDCGDTIGFALTAPPMQMDLSLWE 586

Query: 577 RFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAHEHFMMF 636
           RFF  GIG+L L+ELDYWP QDRDVNQRSL+LP +GL+ +CLTLRKL IHGTAHEHFM F
Sbjct: 587 RFFLTGIGSLSLSELDYWPPQDRDVNQRSLSLPGAGLLQECLTLRKLFIHGTAHEHFMNF 646

Query: 637 FTRMPNVRDVQLREDYYPAPADDSTTEMREDSHRRFEDAMNRRRIAD 683
             R+PN+RDVQLR DYYPAP +D +TEMR  S  RFED +N R I D
Sbjct: 647 LLRIPNLRDVQLRADYYPAPENDMSTEMRVGSCSRFEDQLNSRNIID 693

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Promotes the senescence. Contributes to the selective repression of axillary shoots and moderates the branching by regulating negatively the auxin transport in primary stems, in an AXR1-independent manner.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q5VMP0\|MAX2_ORYSJ F-box/LRR-repeat MAX2 homolog OS=Oryza sativa subsp. japonica GN=D3 PE=2 SV=2	Back alignment and function description

>sp\|Q9C5D2\|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1	Back alignment and function description

>sp\|Q96IG2\|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2	Back alignment and function description

>sp\|Q58DG6\|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2	Back alignment and function description

>sp\|Q9CZV8\|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3	Back alignment and function description

>sp\|P34284\|YKK7_CAEEL Uncharacterized F-box/LRR-repeat protein C02F5.7 OS=Caenorhabditis elegans GN=C02F5.7 PE=4 SV=3	Back alignment and function description

>sp\|Q9QZH7\|FXL20_RAT F-box/LRR-repeat protein 20 OS=Rattus norvegicus GN=Fbxl20 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		683
147810398		712	hypothetical protein VITISV_001981 [Viti	0.881	0.845	0.609	0.0
302143426		696	unnamed protein product [Vitis vinifera]	0.868	0.852	0.609	0.0
255575295		695	F-box/leucine rich repeat protein, putat	0.980	0.964	0.560	0.0
224128748		694	f-box family protein [Populus trichocarp	0.840	0.827	0.607	0.0
18406017		693	F-box protein ORE9 [Arabidopsis thaliana	0.979	0.965	0.537	0.0
449479133		715	PREDICTED: F-box protein ORE9-like [Cucu	0.982	0.938	0.521	0.0
449438510		715	PREDICTED: F-box protein ORE9-like [Cucu	0.982	0.938	0.521	0.0
356545100		711	PREDICTED: F-box protein ORE9-like [Glyc	0.837	0.804	0.600	0.0
312282253		701	unnamed protein product [Thellungiella h	0.963	0.938	0.533	0.0
329739343		708	MAX2A [Petunia x hybrida]	0.840	0.810	0.586	0.0

>gi\|147810398\|emb\|CAN59822.1\| hypothetical protein VITISV_001981 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/622 (60%), Positives = 470/622 (75%), Gaps = 20/622 (3%)

Query: 81  SPTRPPLTSGLPVNHVSHHLLSDTV------TLEILLPQWPGLRHVKLVRWHQRLQAPLG 134
           SP+  P+     + H    + S TV      TL++L PQWP L H+KLV+WHQR  + LG
Sbjct: 92  SPSSDPMLLAHLLRHAFPMVTSLTVYARTPATLQLLAPQWPNLTHIKLVKWHQRSPSALG 151

Query: 135 AEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQE 194
           ++F P+  HC  L S+DLSNFY+WTEDLPP L+A+P  +A LT L+L+T SF EGFK+ E
Sbjct: 152 SDFDPILRHCTSLTSVDLSNFYYWTEDLPPALQAHPATAAALTRLDLMTLSFAEGFKSHE 211

Query: 195 IREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGD 254
           I  ITAACP+L +LL+ACTFDPRYIGFV DE + AIA+NCP LT+LHL DT+SL+N RGD
Sbjct: 212 ILAITAACPNLQQLLIACTFDPRYIGFVGDEAIVAIASNCPGLTVLHLADTASLSNGRGD 271

Query: 255 PDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLK 314
           P+ +GF++EDA +S   L  LFSGLPLL+ELVLDVCKNVRDSG  LE+L S+C  L+VLK
Sbjct: 272 PEEEGFSSEDAGISTTALSGLFSGLPLLQELVLDVCKNVRDSGATLEMLNSRCPKLRVLK 331

Query: 315 LGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKN 374
           LG FHG+CLAIG QLDGV+LC GLESLSIKN  DL+DMGL+AI RGC +L KFE+ GCK 
Sbjct: 332 LGHFHGLCLAIGSQLDGVALCQGLESLSIKNSADLTDMGLIAIARGCSKLAKFEIHGCKK 391

Query: 375 VTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTE 434
           VT  G+ TMA LRR TLVE KISCCK L AV++ + L+ +RDRI++LHIDC+WD  E  E
Sbjct: 392 VTWKGISTMACLRRSTLVEFKISCCKNLDAVSALRGLEPIRDRIQRLHIDCIWDRSEQFE 451

Query: 435 SSESKV--RSFDLNEL------NDEDD-----ELGLRKKRKFCLPEGGNWHLQIKENGVC 481
            SE  +   SFDLNEL      + +DD     E  ++KK++    +    + Q   NG+C
Sbjct: 452 DSEEAILAHSFDLNELEQPSIPSQDDDRFWDHEASIKKKKRKYTTDLDASYEQNNGNGIC 511

Query: 482 CKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSC 541
            KTW+ L+CLS+WI VG+LL PL   GLDDCP LEEI+IK+EGD R R KPS + FGLS 
Sbjct: 512 SKTWERLRCLSLWIGVGELLPPLAKAGLDDCPCLEEIQIKVEGDCRERSKPS-QPFGLSS 570

Query: 542 LTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNGIGNLRLNELDYWPAQDRDV 601
           L RYP+L+K++L+ G+TIGYALTAP G+TDL+ W+RF+ NGI NL LNELDYWP QD+DV
Sbjct: 571 LMRYPRLSKMKLDCGDTIGYALTAPSGQTDLSTWERFYLNGIKNLTLNELDYWPPQDKDV 630

Query: 602 NQRSLTLPASGLIAQCLTLRKLIIHGTAHEHFMMFFTRMPNVRDVQLREDYYPAPADDST 661
           N RSL+LP++GL+A+C+TLRKL IHGTAHEHFM F   +PN+RDVQLREDYYPAP +D +
Sbjct: 631 NHRSLSLPSAGLLAECVTLRKLFIHGTAHEHFMTFLLAIPNLRDVQLREDYYPAPENDMS 690

Query: 662 TEMREDSHRRFEDAMNRRRIAD 683
           TEMR DS  RFEDA+NRRRI D
Sbjct: 691 TEMRIDSCSRFEDALNRRRILD 712

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|302143426\|emb\|CBI21987.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255575295\|ref\|XP_002528551.1\| F-box/leucine rich repeat protein, putative [Ricinus communis] gi\|223532053\|gb\|EEF33863.1\| F-box/leucine rich repeat protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224128748\|ref\|XP_002320412.1\| f-box family protein [Populus trichocarpa] gi\|222861185\|gb\|EEE98727.1\| f-box family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi|18406017|ref|NP_565979.1| F-box protein ORE9 [Arabidopsis thaliana] gi|75265894|sp|Q9SIM9.2|ORE9_ARATH RecName: Full=F-box protein ORE9; AltName: Full=F-box/LRR-repeat protein 7; AltName: Full=Protein MORE AXILLARY BRANCHING 2; AltName: Full=Protein ORESARA 9 gi|15420162|gb|AAK97303.1|AF305597_1 F-box containing protein ORE9 [Arabidopsis thaliana] gi|20198073|gb|AAD22992.2| F-box protein ORE9, AtFBL7 [Arabidopsis thaliana] gi|330255055|gb|AEC10149.1| F-box protein ORE9 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|449479133\|ref\|XP_004155515.1\| PREDICTED: F-box protein ORE9-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449438510\|ref\|XP_004137031.1\| PREDICTED: F-box protein ORE9-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356545100\|ref\|XP_003540983.1\| PREDICTED: F-box protein ORE9-like [Glycine max]	Back alignment and taxonomy information

>gi\|312282253\|dbj\|BAJ33992.1\| unnamed protein product [Thellungiella halophila]	Back alignment and taxonomy information

>gi\|329739343\|gb\|AEB97384.1\| MAX2A [Petunia x hybrida]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		683
TAIR\|locus:2041499		693	MAX2 "AT2G42620" [Arabidopsis	0.836	0.823	0.583	2.7e-180
UNIPROTKB\|Q5VMP0		720	D3 "F-box/LRR-repeat MAX2 homo	0.818	0.776	0.454	1.8e-126
TAIR\|locus:2166978		405	AT5G23340 [Arabidopsis thalian	0.306	0.516	0.242	1.9e-06
TAIR\|locus:505006471		610	AT4G15475 "AT4G15475" [Arabido	0.468	0.524	0.235	1.7e-05
TAIR\|locus:2145512		623	EBF2 "EIN3-binding F box prote	0.222	0.243	0.269	0.00013
TAIR\|locus:2163690		479	AT5G51380 "AT5G51380" [Arabido	0.288	0.411	0.240	0.00039

TAIR\|locus:2041499 MAX2 "AT2G42620" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1750 (621.1 bits), Expect = 2.7e-180, P = 2.7e-180
 Identities = 341/584 (58%), Positives = 425/584 (72%)

Query:   106 TLEILLPQWPGLRHVKLVRWHQRL-QAPLGAEFIPLFEHCE-CLKSIDLSNFYFWTEDLP 163
             +LE+LLPQWP +RH+KL+RWHQR  Q P G +F+P+FEHC   L+S+DLSNFY WTEDLP
Sbjct:   117 SLELLLPQWPRIRHIKLLRWHQRASQIPTGGDFVPIFEHCGGFLESLDLSNFYHWTEDLP 176

Query:   164 PVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGFVN 223
             PVL  Y + +A LT L+LLT SFTEG+K+ EI  IT +CP+L    VACTFDPRY  FV 
Sbjct:   177 PVLLRYADVAARLTRLDLLTASFTEGYKSSEIVSITKSCPNLKTFRVACTFDPRYFEFVG 236

Query:   224 DETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLE 283
             DETLSA+AT+ PKLTLLH+VDT+SLAN R  P   G  A D++V+   LI++FSGLP LE
Sbjct:   237 DETLSAVATSSPKLTLLHMVDTASLANPRAIP---GTEAGDSAVTAGTLIEVFSGLPNLE 293

Query:   284 ELVLDVCKNVRDSGPXXXXXXXXXXXXXXXXXGQFHGVCLAIGWQ-LDGVSLCGGLESLS 342
             ELVLDV K+V+ SG                  GQF GVC A  W+ LDGV+LCGGL+SLS
Sbjct:   294 ELVLDVGKDVKHSGVALEALNSKCKKLRVLKLGQFQGVCSATEWRRLDGVALCGGLQSLS 353

Query:   343 IKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQL 402
             IKN GDL+DMGLVAIGRGC +L  FE++GC+NVTVDGLRTM +LR +TL +++ISCCK L
Sbjct:   354 IKNSGDLTDMGLVAIGRGCCKLTTFEIQGCENVTVDGLRTMVSLRSKTLTDVRISCCKNL 413

Query:   403 GAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESKVRSFXXXXXXXXXXXXGLRKKRK 462
                AS KA++ + DRI++LHIDCVW G E  E  E +V +             G  + +K
Sbjct:   414 DTAASLKAIEPICDRIKRLHIDCVWSGSE-DEEVEGRVET---SEADHEEEDDGYERSQK 469

Query:   463 FCLPEGGNWHLQIKE-NGVCC--KTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIR 519
              C       H    + NG C   + W+ L+ LS+WI VG+ LTPLP+ GLDDCP LEEIR
Sbjct:   470 RCKYSFEEEHCSTSDVNGFCSEDRVWEKLEYLSLWINVGEFLTPLPMTGLDDCPNLEEIR 529

Query:   520 IKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFF 579
             IK+EGD RG+++P++  FGLSCL  YP+L+K++L+ G+TIG+ALTAP  + DL+LW+RFF
Sbjct:   530 IKIEGDCRGKRRPAEPEFGLSCLALYPKLSKMQLDCGDTIGFALTAPPMQMDLSLWERFF 589

Query:   580 FNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAHEHFMMFFTR 639
               GIG+L L+ELDYWP QDRDVNQRSL+LP +GL+ +CLTLRKL IHGTAHEHFM F  R
Sbjct:   590 LTGIGSLSLSELDYWPPQDRDVNQRSLSLPGAGLLQECLTLRKLFIHGTAHEHFMNFLLR 649

Query:   640 MPNVRDVQLREDYYPAPADDSTTEMREDSHRRFEDAMNRRRIAD 683
             +PN+RDVQLR DYYPAP +D +TEMR  S  RFED +N R I D
Sbjct:   650 IPNLRDVQLRADYYPAPENDMSTEMRVGSCSRFEDQLNSRNIID 693

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0000151 "ubiquitin ligase complex" evidence=IPI

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0007568 "aging" evidence=IMP

GO:0009934 "regulation of meristem structural organization" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0009414 "response to water deprivation" evidence=IGI

GO:0009926 "auxin polar transport" evidence=IMP

GO:0010016 "shoot system morphogenesis" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IMP

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

UNIPROTKB\|Q5VMP0 D3 "F-box/LRR-repeat MAX2 homolog" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2166978 AT5G23340 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:505006471 AT4G15475 "AT4G15475" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2145512 EBF2 "EIN3-binding F box protein 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2163690 AT5G51380 "AT5G51380" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SIM9	ORE9_ARATH	No assigned EC number	0.5374	0.9795	0.9653	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00018739001	SubName- Full=Putative uncharacterized protein (Chromosome chr12 scaffold_18, whole genome shotgun sequence); (712 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00019146001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (626 aa)	•	0.428
	GSVIVG00032423001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (563 aa)	•	0.424

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		683
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	5e-08
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	8e-04

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 28/138 (20%)

Query: 265 ASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLA 324
             +  EGLI L    P L+ L L  C+N+ DSG V   L + C  L+ + LG+ H     
Sbjct: 63  KLIDDEGLIALAQSCPNLQVLDLRACENITDSGIV--ALATNCPKLQTINLGR-HRNGHL 119

Query: 325 IGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMA 384
           I                        +D+ L A+G+ C  L      GC +VT  G+  +A
Sbjct: 120 I------------------------TDVSLSALGKNCTFLQTVGFAGC-DVTDKGVWELA 154

Query: 385 ALRRETLVEMKISCCKQL 402
           +   ++L  + ++ C+ L
Sbjct: 155 SGCSKSLERLSLNNCRNL 172

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		683
KOG4341		483	consensus F-box protein containing LRR [General fu	99.97
KOG4341		483	consensus F-box protein containing LRR [General fu	99.92
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.91
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.9
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.9
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.68
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.66
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.57
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.57
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.56
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.47
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.44
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.43
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.43
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.39
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.37
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.33
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.23
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.18
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	98.94
KOG0472		565	consensus Leucine-rich repeat protein [Function un	98.88
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	98.85
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	98.75
PF12937		47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.71
KOG0472		565	consensus Leucine-rich repeat protein [Function un	98.61
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.58
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.51
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.17
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.13
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.13
PF00646		48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.13
smart00256		41	FBOX A Receptor for Ubiquitination Targets.	98.05
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.99
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	97.95
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.93
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.91
KOG3864		221	consensus Uncharacterized conserved protein [Funct	97.88
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.77
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	97.74
KOG4237		498	consensus Extracellular matrix protein slit, conta	97.7
KOG0617		264	consensus Ras suppressor protein (contains leucine	97.69
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	97.54
KOG2982		418	consensus Uncharacterized conserved protein [Funct	97.53
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.52
KOG2123		388	consensus Uncharacterized conserved protein [Funct	97.42
KOG4237		498	consensus Extracellular matrix protein slit, conta	97.39
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.38
KOG0617		264	consensus Ras suppressor protein (contains leucine	97.36
KOG2982		418	consensus Uncharacterized conserved protein [Funct	97.32
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.19
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.04
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	97.01
PLN03150		623	hypothetical protein; Provisional	96.85
KOG3864		221	consensus Uncharacterized conserved protein [Funct	96.82
PLN03150		623	hypothetical protein; Provisional	96.72
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.46
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.35
KOG4308		478	consensus LRR-containing protein [Function unknown	96.0
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	95.85
KOG2997		366	consensus F-box protein FBX9 [General function pre	95.74
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	95.49
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	95.47
PLN03215		373	ascorbic acid mannose pathway regulator 1; Provisi	95.42
PRK15386		426	type III secretion protein GogB; Provisional	95.4
KOG4308		478	consensus LRR-containing protein [Function unknown	94.93
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	94.81
KOG0281		499	consensus Beta-TrCP (transducin repeats containing	94.68
PRK15386		426	type III secretion protein GogB; Provisional	94.52
KOG2123		388	consensus Uncharacterized conserved protein [Funct	94.26
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.26
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	93.55
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.89
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	92.84
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	91.08
PF13013		109	F-box-like_2: F-box-like domain	90.42
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.35
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	89.18
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	88.76
KOG3763		585	consensus mRNA export factor TAP/MEX67 [RNA proces	88.37
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	84.29
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	81.58

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

Probab=99.97  E-value=5.3e-32  Score=267.44  Aligned_cols=368  Identities=19%  Similarity=0.278  Sum_probs=293.5

Q ss_pred             CCCcHHHHHHHHhcCCCCCccchhhhhhh-hhcccccccCCCCCCcccccCCCCCCCCCCCCCCccchhhhcccCCCCCC
Q 038791            7 NNLPDRYARAELAVFSQPEVPLAGEGHAH-LHHAPRQRAIPAHDPYLFQIGHGPGHFQPLSVGPPLAHASHALRSSPTRP   85 (683)
Q Consensus         7 ~~LP~eiL~~If~~L~~~~d~~~~s~VCk-W~~~~~~~~~~~r~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~   85 (683)
                      -.||+|++..||+|| +++.++++|+||+ |+..+.+..           -|+..+..++-  .+-..+.+.....+|.+
T Consensus        73 ~~LPpEl~lkvFS~L-Dtksl~r~a~~c~~~n~~AlD~~-----------~~q~idL~t~~--rDv~g~VV~~~~~Rcgg  138 (483)
T KOG4341|consen   73 RSLPPELLLKVFSML-DTKSLCRAAQCCTMWNKLALDGS-----------CWQHIDLFTFQ--RDVDGGVVENMISRCGG  138 (483)
T ss_pred             ccCCHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhhhccc-----------cceeeehhcch--hcCCCcceehHhhhhcc
Confidence            369999999999999 9999999999999 999996433           12211111110  01112333333333444


Q ss_pred             CCCCChhhhhhcccC-ccCHHHHHHHhccCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhH
Q 038791           86 PLTSGLPVNHVSHHL-LSDTVTLEILLPQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPP  164 (683)
Q Consensus        86 ~~~~~l~~~~~l~~~-~~~~~~L~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~  164 (683)
                      |.     -...++++ .+.+..+..+...||++++|.+.+|...    .+..+..+...|++|++|++..|..+++..  
T Consensus       139 ~l-----k~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~i----Td~s~~sla~~C~~l~~l~L~~c~~iT~~~--  207 (483)
T KOG4341|consen  139 FL-----KELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKI----TDSSLLSLARYCRKLRHLNLHSCSSITDVS--  207 (483)
T ss_pred             cc-----ccccccccccCCcchhhHHhhhCCchhhhhhhcceec----cHHHHHHHHHhcchhhhhhhcccchhHHHH--
Confidence            44     23344444 6778889999999999999999988855    467778888999999999999987776644  


Q ss_pred             HHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEe-ceecCCCCccccCHHHHHHHHhcCCCCcEEeec
Q 038791          165 VLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLV-ACTFDPRYIGFVNDETLSAIATNCPKLTLLHLV  243 (683)
Q Consensus       165 ~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~  243 (683)
                       ++.+...|++|++|+++   +|..+++.++..+...|..++.+.+ +|.       ..+++.+..+...|+-+.++++.
T Consensus       208 -Lk~la~gC~kL~~lNlS---wc~qi~~~gv~~~~rG~~~l~~~~~kGC~-------e~~le~l~~~~~~~~~i~~lnl~  276 (483)
T KOG4341|consen  208 -LKYLAEGCRKLKYLNLS---WCPQISGNGVQALQRGCKELEKLSLKGCL-------ELELEALLKAAAYCLEILKLNLQ  276 (483)
T ss_pred             -HHHHHHhhhhHHHhhhc---cCchhhcCcchHHhccchhhhhhhhcccc-------cccHHHHHHHhccChHhhccchh
Confidence             55566778899999999   8888999999999999999998887 664       78888998888899999999988


Q ss_pred             CCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccc
Q 038791          244 DTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCL  323 (683)
Q Consensus       244 ~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~  323 (683)
                      +|                   +.+||.++..+...|..|+.|+.+.|.++++..  +.++++++++|+.|.+.+|..+++
T Consensus       277 ~c-------------------~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~--l~aLg~~~~~L~~l~l~~c~~fsd  335 (483)
T KOG4341|consen  277 HC-------------------NQLTDEDLWLIACGCHALQVLCYSSCTDITDEV--LWALGQHCHNLQVLELSGCQQFSD  335 (483)
T ss_pred             hh-------------------ccccchHHHHHhhhhhHhhhhcccCCCCCchHH--HHHHhcCCCceEEEeccccchhhh
Confidence            88                   568888998888899999999999999988876  889999999999999999987654


Q ss_pred             cccccccccc-cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHh-c-ccCccEEEeeccc
Q 038791          324 AIGWQLDGVS-LCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAAL-R-RETLVEMKISCCK  400 (683)
Q Consensus       324 ~~~~~~~~l~-~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~-~-~~~L~~L~l~~c~  400 (683)
                         .++..++ +|+.|+.+++..|..++|..+..++.+|+.|++|.++.|..+|+.|+..+... | ...|+.+.+++|+
T Consensus       336 ---~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p  412 (483)
T KOG4341|consen  336 ---RGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP  412 (483)
T ss_pred             ---hhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence               5777787 89999999999999899999999999999999999999999999999888653 1 1789999999999


Q ss_pred             ccChhhHHHHHHhcCCCccEEEEe-eecCChhhHHHH
Q 038791          401 QLGAVASCKALDLVRDRIEKLHID-CVWDGLELTESS  436 (683)
Q Consensus       401 ~l~~~~~l~~l~~~~~~L~~L~L~-c~~~~~~~~~~~  436 (683)
                      .++ +..+..+ ..|++|+.+++- |..++.++++..
T Consensus       413 ~i~-d~~Le~l-~~c~~Leri~l~~~q~vtk~~i~~~  447 (483)
T KOG4341|consen  413 LIT-DATLEHL-SICRNLERIELIDCQDVTKEAISRF  447 (483)
T ss_pred             Cch-HHHHHHH-hhCcccceeeeechhhhhhhhhHHH
Confidence            984 4445554 478999999886 666555555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]	Back alignment and domain information

>smart00256 FBOX A Receptor for Ubiquitination Targets	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>KOG2997 consensus F-box protein FBX9 [General function prediction only]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>PF13013 F-box-like_2: F-box-like domain	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		683
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	3e-18
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	2e-13
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	3e-13
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	9e-10
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	4e-17
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	5e-11
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	1e-16
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	9e-16
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	7e-07
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-05
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-04
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	8e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-04
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-04

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

 Score = 88.1 bits (218), Expect = 3e-18
 Identities = 46/306 (15%), Positives = 94/306 (30%), Gaps = 45/306 (14%)

Query: 107 LEILLPQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVL 166
           + IL P    +R + L+            +   L + C  L+ ++  N     +     L
Sbjct: 285 MPILFPFAAQIRKLDLLYALL-----ETEDHCTLIQKCPNLEVLETRNV--IGDR---GL 334

Query: 167 RAYPEKSANLTCLNLLTTSFTEGFKAQE-------IREITAACPSLNKLLVACTFDPRYI 219
               +    L  L +   +  +G + +E       +  +   C  L  + V  +      
Sbjct: 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD----- 389

Query: 220 GFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGL 279
             + +E+L +I T    L    LV           P  +G  +            L  G 
Sbjct: 390 --ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS------------LLIGC 435

Query: 280 PLLEELVL-DVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGL 338
             L           + D G  L  +     +++ + LG + G       +      C  L
Sbjct: 436 KKLRRFAFYLRQGGLTDLG--LSYIGQYSPNVRWMLLG-YVGESDEGLMEF--SRGCPNL 490

Query: 339 ESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMA-ALRRETLVEMKIS 397
           + L ++ C   S+  + A       L    ++G +  ++ G   M  A     +  +   
Sbjct: 491 QKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548

Query: 398 CCKQLG 403
              ++ 
Sbjct: 549 RVPEVN 554

PyMOL of 3ogk

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		683
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	100.0
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.94
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	99.92
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.91
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.91
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.9
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.89
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.88
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.87
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.87
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.85
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.84
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.83
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.83
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.83
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.82
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.82
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.81
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.8
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.8
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.8
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.79
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.78
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.78
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.78
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.77
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.77
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.75
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.75
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.74
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.74
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.74
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.72
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.67
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.67
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.66
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.66
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.63
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.63
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.62
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.6
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.57
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.57
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.57
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.56
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.55
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.55
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.51
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.51
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.46
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.44
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.43
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.42
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.42
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.4
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.38
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.34
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.33
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.32
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.31
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.31
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.31
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.3
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.29
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.29
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.28
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.27
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.27
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.26
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.26
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.26
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.25
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.25
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.24
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.23
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.22
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.21
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.2
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.19
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.19
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.18
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.17
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.1
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.09
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	98.99
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	98.97
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	98.96
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	98.9
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	98.9
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	98.9
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	98.89
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	98.86
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	98.84
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	98.83
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	98.81
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	98.79
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.79
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.78
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	98.78
1fs1_A		53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.76
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.71
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	98.66
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.65
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.63
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.59
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	98.59
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.58
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.56
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.55
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.54
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.54
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.51
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	98.51
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.51
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.4
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.39
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.36
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.34
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.33
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.31
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.31
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.29
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.29
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.23
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.18
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.18
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.14
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.14
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.14
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.13
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.12
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.11
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	97.99
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.92
3l2o_B		312	F-box only protein 4; small G protein fold, UBL co	97.89
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	97.89
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.88
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.84
2e31_A		297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.83
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.74
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	97.73
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.68
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	97.67
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	97.66
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	97.59
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	97.38
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	97.32
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.27
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.16
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	97.14
3v7d_B		464	Cell division control protein 4; WD 40 domain, pho	97.04
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	97.0
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	96.92
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	96.91
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.89
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	96.84
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	96.83
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	96.69
2ovr_B		445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.65
1p22_A		435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.55
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	96.33
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	96.0
4h09_A		379	Hypothetical leucine rich repeat protein; two LRR_	85.47

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

Probab=100.00  E-value=6.6e-35  Score=329.77  Aligned_cols=453  Identities=17%  Similarity=0.159  Sum_probs=272.2

Q ss_pred             CCCCcCCCCcHHHHHHHHhcCCCCCccchhhhhhh-hhcccccccCCCCCCcccccCCCCCCCCCCCCCCccchhhhccc
Q 038791            1 MAATTINNLPDRYARAELAVFSQPEVPLAGEGHAH-LHHAPRQRAIPAHDPYLFQIGHGPGHFQPLSVGPPLAHASHALR   79 (683)
Q Consensus         1 m~~~~i~~LP~eiL~~If~~L~~~~d~~~~s~VCk-W~~~~~~~~~~~r~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~   79 (683)
                      |.++.|++||||||.+||+||+..+|++++++||| |+++....+   +          ...+..               
T Consensus         1 ~~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~---~----------~l~~~~---------------   52 (594)
T 2p1m_B            1 MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCR---R----------KVFIGN---------------   52 (594)
T ss_dssp             ---------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHC---C----------EEEESS---------------
T ss_pred             CcccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhc---e----------EEeecc---------------
Confidence            77889999999999999999933999999999999 999953222   0          000000               


Q ss_pred             CCCCCCCCCCChhhhhhcccCccCHHHHHHHhccCCCccEEEeccccccccC-----CC----cccHHHHhhcCCCCCEE
Q 038791           80 SSPTRPPLTSGLPVNHVSHHLLSDTVTLEILLPQWPGLRHVKLVRWHQRLQA-----PL----GAEFIPLFEHCECLKSI  150 (683)
Q Consensus        80 ~~~~~~~~~~~l~~~~~l~~~~~~~~~L~~l~~~~~~L~~L~L~~~~~~~~~-----~~----~~~l~~~~~~~~~L~~L  150 (683)
                         +..                ..   ...+..++|+|++|++.++......     .+    ...+..+...+++|++|
T Consensus        53 ---~~~----------------~~---~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L  110 (594)
T 2p1m_B           53 ---CYA----------------VS---PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEI  110 (594)
T ss_dssp             ---TTS----------------SC---HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEE
T ss_pred             ---ccc----------------cC---HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeE
Confidence               000                00   1133456677777777754322100     01    11234455667777777


Q ss_pred             EeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEe-ceecCCCCccccCHHHHHH
Q 038791          151 DLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLV-ACTFDPRYIGFVNDETLSA  229 (683)
Q Consensus       151 ~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~l~~~~l~~  229 (683)
                      +|+++.+ ++..+..+.   ..+++|++|+|+   .|..+++.++..+...|++|++|++ +|.+     .......+..
T Consensus       111 ~L~~~~~-~~~~~~~l~---~~~~~L~~L~L~---~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i-----~~~~~~~l~~  178 (594)
T 2p1m_B          111 RLKRMVV-TDDCLELIA---KSFKNFKVLVLS---SCEGFSTDGLAAIAATCRNLKELDLRESDV-----DDVSGHWLSH  178 (594)
T ss_dssp             EEESCBC-CHHHHHHHH---HHCTTCCEEEEE---SCEEEEHHHHHHHHHHCTTCCEEECTTCEE-----ECCCGGGGGG
T ss_pred             EeeCcEE-cHHHHHHHH---HhCCCCcEEeCC---CcCCCCHHHHHHHHHhCCCCCEEeCcCCcc-----CCcchHHHHH
Confidence            7777764 232222222   123477777777   4545666667777777777777777 3321     1111222333


Q ss_pred             HHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCC
Q 038791          230 IATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSS  309 (683)
Q Consensus       230 l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~  309 (683)
                      +...+++|++|++++|.                  ..+++..+..+...+++|++|++++|..+++    ++.+...+++
T Consensus       179 ~~~~~~~L~~L~l~~~~------------------~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~----l~~~~~~~~~  236 (594)
T 2p1m_B          179 FPDTYTSLVSLNISCLA------------------SEVSFSALERLVTRCPNLKSLKLNRAVPLEK----LATLLQRAPQ  236 (594)
T ss_dssp             SCTTCCCCCEEECTTCC------------------SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH----HHHHHHHCTT
T ss_pred             HhhcCCcCcEEEecccC------------------CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH----HHHHHhcCCc
Confidence            34456677777776542                  1355566666666667777777766533322    4455556666


Q ss_pred             CcEEEecCccc-------------------------ccccccccccc-cccCCCCcEEEeccCCCCCHHHHHHHHhcCCC
Q 038791          310 LKVLKLGQFHG-------------------------VCLAIGWQLDG-VSLCGGLESLSIKNCGDLSDMGLVAIGRGCRR  363 (683)
Q Consensus       310 L~~L~L~~c~~-------------------------l~~~~~~~~~~-l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~  363 (683)
                      |+.|.++.|..                         +.......+.. +..+++|++|++++|. +++..+..+...|++
T Consensus       237 L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~  315 (594)
T 2p1m_B          237 LEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPK  315 (594)
T ss_dssp             CSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTT
T ss_pred             ceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCC
Confidence            66666543321                         11111112222 2368999999999988 999999888888999


Q ss_pred             CcEEEecCCCCCCHHHHHHHHHhcccCccEEEee--------cccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHH
Q 038791          364 LIKFELEGCKNVTVDGLRTMAALRRETLVEMKIS--------CCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTES  435 (683)
Q Consensus       364 L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~--------~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~  435 (683)
                      |++|++++|  +++.++..++..+ ++|++|++.        +|..++ ..++..+...|++|+.|.+.|+.++..++..
T Consensus       316 L~~L~l~~~--~~~~~l~~l~~~~-~~L~~L~L~~~~~~g~~~~~~l~-~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~  391 (594)
T 2p1m_B          316 LQRLWVLDY--IEDAGLEVLASTC-KDLRELRVFPSEPFVMEPNVALT-EQGLVSVSMGCPKLESVLYFCRQMTNAALIT  391 (594)
T ss_dssp             CCEEEEEGG--GHHHHHHHHHHHC-TTCCEEEEECSCTTCSSCSSCCC-HHHHHHHHHHCTTCCEEEEEESCCCHHHHHH
T ss_pred             cCEEeCcCc--cCHHHHHHHHHhC-CCCCEEEEecCcccccccCCCCC-HHHHHHHHHhchhHHHHHHhcCCcCHHHHHH
Confidence            999999998  6888898888888 999999994        455663 4557777777999999988899998888777


Q ss_pred             Hhh---hccccCcc-----cC---C----cH---HHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeec
Q 038791          436 SES---KVRSFDLN-----EL---N----DE---DDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEV  497 (683)
Q Consensus       436 ~~~---~~~~l~l~-----~~---~----~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  497 (683)
                      +..   .++.+++.     .+   .    +.   ..+..|++|+.+.+    ++.+++.....++..+++|+.|+++.  
T Consensus       392 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L----~~~l~~~~~~~l~~~~~~L~~L~L~~--  465 (594)
T 2p1m_B          392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL----SGLLTDKVFEYIGTYAKKMEMLSVAF--  465 (594)
T ss_dssp             HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC----CSSCCHHHHHHHHHHCTTCCEEEEES--
T ss_pred             HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee----cCcccHHHHHHHHHhchhccEeeccC--
Confidence            653   44445544     11   1    11   22456777777777    22344444444444567788888743  


Q ss_pred             cccCCCccccCC-CCCCCcceeeecccCCCCCCCCCCCccchhh-hhccCccccccccccccc
Q 038791          498 GQLLTPLPIVGL-DDCPVLEEIRIKMEGDSRGRQKPSDRAFGLS-CLTRYPQLTKLRLEFGET  558 (683)
Q Consensus       498 ~~~l~~~~~~~L-~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~  558 (683)
                       +.+++.+...+ .+|++|++|+|+   +|.. +     ..++. ....+++|+.|+++.|..
T Consensus       466 -~~i~~~~~~~l~~~~~~L~~L~L~---~n~~-~-----~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          466 -AGDSDLGMHHVLSGCDSLRKLEIR---DCPF-G-----DKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             -CCSSHHHHHHHHHHCTTCCEEEEE---SCSC-C-----HHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             -CCCcHHHHHHHHhcCCCcCEEECc---CCCC-c-----HHHHHHHHHhCCCCCEEeeeCCCC
Confidence             45555554444 567888888888   7731 0     12222 234577888888877654

PyMOL of 2p1m

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*	Back alignment and structure

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		683
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.84
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.83
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.66
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.58
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	99.35
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.32
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.31
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	99.2
d1fs1a1		41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.85
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.85
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.83
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.8
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.75
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.72
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.72
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.71
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.7
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.68
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.67
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.64
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.52
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	98.46
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.34
d1nexb1		100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.32
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.31
d2ovrb1		102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.3
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.25
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.25
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.17
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.13
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	98.12
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.1
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	98.05
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.02
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	97.94
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	97.92
d1p22a1		118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.9
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.67
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.64
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.82
d2ifga3		156	High affinity nerve growth factor receptor, N-term	96.63
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.2
d2ifga3		156	High affinity nerve growth factor receptor, N-term	96.09

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.1e-20  Score=189.45  Aligned_cols=203  Identities=20%  Similarity=0.236  Sum_probs=99.3

Q ss_pred             CCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEe-ceecCCCCccccCH
Q 038791          146 CLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLV-ACTFDPRYIGFVND  224 (683)
Q Consensus       146 ~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~l~~  224 (683)
                      +|++|+++++.+.++.+...+    ..|++|++|+|+++.    +++..+..+ ..+++|++|++ +|       ..+++
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~----~~c~~L~~L~L~~~~----l~~~~~~~l-~~~~~L~~L~Ls~c-------~~itd  110 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGIL----SQCSKLQNLSLEGLR----LSDPIVNTL-AKNSNLVRLNLSGC-------SGFSE  110 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHH----TTBCCCSEEECTTCB----CCHHHHHHH-TTCTTCSEEECTTC-------BSCCH
T ss_pred             CCCEEECCCCccCHHHHHHHH----HhCCCcccccccccC----CCcHHHHHH-hcCCCCcCcccccc-------ccccc
Confidence            455555555544222222211    233355555555322    444444444 34555555555 32       24555


Q ss_pred             HHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHH-hCCCCCcEEEecccc-CcCCChhHHHH
Q 038791          225 ETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLF-SGLPLLEELVLDVCK-NVRDSGPVLEV  302 (683)
Q Consensus       225 ~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~-~~~~~L~~L~L~~c~-~l~~~~~~l~~  302 (683)
                      .++..++..|++|++|++++|                   ..+++.++...+ ..+++|+.|++++|. .+++.+  +..
T Consensus       111 ~~l~~l~~~~~~L~~L~ls~c-------------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~--l~~  169 (284)
T d2astb2         111 FALQTLLSSCSRLDELNLSWC-------------------FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD--LST  169 (284)
T ss_dssp             HHHHHHHHHCTTCCEEECCCC-------------------TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH--HHH
T ss_pred             cccchhhHHHHhccccccccc-------------------cccccccchhhhcccccccchhhhccccccccccc--ccc
Confidence            555555555555555555554                   234444443322 234555555555542 243333  444


Q ss_pred             HHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHH
Q 038791          303 LKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRT  382 (683)
Q Consensus       303 l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~  382 (683)
                      ++.+||+|++|++++|..+++   ..+..++.+++|++|++++|..+++.++..+++ +|+|+.|++++|  +++.++..
T Consensus       170 l~~~~~~L~~L~L~~~~~itd---~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~-~~~L~~L~l~~~--~~d~~l~~  243 (284)
T d2astb2         170 LVRRCPNLVHLDLSDSVMLKN---DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI--VPDGTLQL  243 (284)
T ss_dssp             HHHHCTTCSEEECTTCTTCCG---GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTS--SCTTCHHH
T ss_pred             cccccccccccccccccCCCc---hhhhhhcccCcCCEEECCCCCCCChHHHHHHhc-CCCCCEEeeeCC--CCHHHHHH
Confidence            555555555555555544432   344445555555555555555555555555544 555555555555  34555555


Q ss_pred             HHHhcccCcc
Q 038791          383 MAALRRETLV  392 (683)
Q Consensus       383 l~~~~~~~L~  392 (683)
                      +...+ |+|+
T Consensus       244 l~~~l-p~L~  252 (284)
T d2astb2         244 LKEAL-PHLQ  252 (284)
T ss_dssp             HHHHS-TTSE
T ss_pred             HHHhC-cccc
Confidence            54444 4443

PyMOL of d2astb2

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure