Citrus Sinensis ID: 038795

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MEGKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQNSATTSSSNSKSYKTKREFPASPDASTLEAPKFTSSMEEESSSKRQSCLSSNMMGNAELIAMAPLPEMINPKLLHFGASCENNPCTEPVLPIYFPQISQPQQDLPFSPESQELLARLEDPYFFDVFGPVDAPPELSGQPFLKPETSCRTGMKDENDKTVNPDAFFDDFPTDMFDHIEPLPSPSDW
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHcccccccccHHHHHHHHHHHHHcccccHHHHcHHccccccccccHEHHHHcccccccccccccHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHcccccHHHHcccccccccccccHcccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
megkreeirkgpwkaeeDEVLINHVkkygprdwssirskgllqrtgkscRLRWVNklrpnlkngckfslEEERIVIELQAQFGNKWARIAtylpgrtdndvkNFWSSRQKRLARILQnsattsssnsksyktkrefpaspdastleapkftssmeeessskrqsclssnmmgnaeliamaplpeminpkllhfgascennpctepvlpiyfpqisqpqqdlpfspeSQELLArledpyffdvfgpvdappelsgqpflkpetscrtgmkdendktvnpdaffddfptdmfdhieplpspsdw
Flexible Loop (DISEMBL)
megkreeirkgpwkaeedevlinhvkkygprdwssirskgllqrtgkscrlrwvnklrpnlkngckfslEEERIVIELQAQFGNKWARIATylpgrtdndvkNFWSSRQKRLARilqnsattsssnsksyktkrefpaspdastleapkftssmeeesssKRQSCLSSNMMGNAELIAMAPLPEMINPKLLHFGASCENNPCTEPVLPIYFPQISQPQQDLPFSPESQELLARLEDPYFFDVFGPVDAPPELSGQPFLKPETSCRTGMKDENDKTVNPDAFFDDFPTDMFDHIeplpspsdw
Low Complexity Region (SEG)
MEGKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQNsattsssnsksyktkREFPASPDASTLEAPKFTSSMEEESSSKRQSCLSSNMMGNAELIAMAPLPEMINPKLLHFGASCENNPCTEPVLPIYFPQISQPQQDLPFSPESQELLARLEDPYFFDVFGPVDAPPELSGQPFLKPETSCRTGMKDENDKTVNPDAFFDDFPTDMFDHIEPLPSPSDW
Disordered region (IsUnstruct)
******************EVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWS*********************************************************************LIAMAPLPEMINPKLLHFGASCENNPCTEPVLPIYFPQI***************LLARLEDPYFFDVFGPV********************************************************
Disordered Region (DISOPRED)
******E**KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQK*************************************************************************************************************DLP*********ARLEDPYFFDVFG*******************************VNPDAFFDDFPTDMFDH***LP*****
Disordered Region (DISEMBL)
***********PWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQ************************************************LSSNMMGNAELIAMAPLPEMINPKLLHFGASCENNPCTEPVLPIYFPQISQPQQDLPFSPESQELLARLEDPYFFDVFGPVDAPPELSGQPFLKPETSCRTGMKDENDKTVNPDAFFDDFPTDMFDHIEPLPSPSDW
Disordered Region (DISPRO)
**G***EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARIL*****************************************************************************************************************LLARLEDPYFFDVFGPVDAPPELSGQPFLKPETSC************NPDAFFDDFPTDMFDHIE********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQNSATTSSSNSKSYKTKREFPASPDASTLEAPKFTSSMEEESSSKRQSCLSSNMMGNAELIAMAPLPEMINPKLLHFGASCENNPCTEPVLPIYFPQISQPQQDLPFSPESQELLARLEDPYFFDVFGPVDAPPELSGQPFLKPETSCRTGMKDENDKTVNPDAFFDDFPTDMFDHIEPLPSPSDW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
A2WW87	553	Transcription factor GAMY	N/A	no	0.390	0.213	0.512	3e-33
Q0JIC2	553	Transcription factor GAMY	no	no	0.390	0.213	0.512	3e-33
Q9LK95	226	Transcription factor MYB2	no	no	0.384	0.513	0.504	1e-30
Q8LPH6	352	Transcription factor MYB8	no	no	0.360	0.309	0.545	6e-30
P81391	205	Myb-related protein 305 O	N/A	no	0.380	0.560	0.495	3e-29
P81392	316	Myb-related protein 306 O	N/A	no	0.360	0.344	0.5	1e-28
Q4JL76	242	Myb-related protein MYBAS	no	no	0.360	0.450	0.536	2e-28
P20027	302	Myb-related protein Hv33	N/A	no	0.354	0.354	0.527	5e-28
Q4JL84	235	Transcription factor MYB5	no	no	0.374	0.480	0.508	5e-28
Q53NK6	237	Myb-related protein MYBAS	no	no	0.360	0.459	0.518	8e-28

>sp|A2WW87|GAM1_ORYSI Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1

 Score =  142 bits (358), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 63/123 (51%), Positives = 89/123 (72%), Gaps = 5/123 (4%)

Query: 8   IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKF 67
           ++KGPW + ED +L+++VKK+G  +W++++    L R GKSCRLRW N LRPNLK G  F
Sbjct: 40  LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKG-AF 98

Query: 68  SLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLAR----ILQNSATTS 123
           + EEER++I+L ++ GNKWAR+A +LPGRTDN++KN+W++R KR  R    I   S    
Sbjct: 99  TAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRCQRAGLPIYPTSVCNQ 158

Query: 124 SSN 126
           SSN
Sbjct: 159 SSN 161

Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter.
Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0JIC2|GAM1_ORYSJ Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1

 Score =  142 bits (358), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 63/123 (51%), Positives = 89/123 (72%), Gaps = 5/123 (4%)

Query: 8   IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKF 67
           ++KGPW + ED +L+++VKK+G  +W++++    L R GKSCRLRW N LRPNLK G  F
Sbjct: 40  LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKG-AF 98

Query: 68  SLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLAR----ILQNSATTS 123
           + EEER++I+L ++ GNKWAR+A +LPGRTDN++KN+W++R KR  R    I   S    
Sbjct: 99  TAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRCQRAGLPIYPTSVCNQ 158

Query: 124 SSN 126
           SSN
Sbjct: 159 SSN 161

Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LK95|MYB21_ARATH Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 89/119 (74%), Gaps = 3/119 (2%)

Query: 7   EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCK 66
           E+RKGPW  EED +LIN++  +G   W+S+     L+RTGKSCRLRW+N LRP+++ G  
Sbjct: 19  EVRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRG-N 77

Query: 67  FSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQNSATTSSS 125
            + EE+ I++EL A++GN+W++IA +LPGRTDN++KNFW +R ++   I Q+  TT+SS
Sbjct: 78  ITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKY--IKQSDVTTTSS 134

Transcription factor involved in photomorphogenesis in the light. May act downstream of the light receptor network and directly affects transcription of light-induced genes. In darkness, its probable degradation prevent the activation of light-induced genes. Required to activate expression of PAL.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1

 Score =  131 bits (330), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 82/110 (74%), Gaps = 1/110 (0%)

Query: 5   REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNG 64
           ++++RKG W  EEDE L+N++ ++G   WSS+     LQR GKSCRLRW+N LRP+LK G
Sbjct: 9   KQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 68

Query: 65  CKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLAR 114
             FS +EE ++IEL A  GN+W++IAT LPGRTDN++KNFW+S  K+  R
Sbjct: 69  A-FSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLR 117

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|P81391|MYB05_ANTMA Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1

 Score =  129 bits (324), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 88/117 (75%), Gaps = 2/117 (1%)

Query: 7   EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCK 66
           E+RKGPW  EED +LIN++  +G   W+S+     L+RTGKSCRLRW+N LRP+++ G  
Sbjct: 12  EVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRG-N 70

Query: 67  FSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSR-QKRLARILQNSATT 122
            + EE+ +++EL A++GN+W++IA  LPGRTDN++KN+W +R QK + +  Q+S+TT
Sbjct: 71  ITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRIQKHMEQGDQSSSTT 127

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|P81392|MYB06_ANTMA Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 55/110 (50%), Positives = 79/110 (71%), Gaps = 1/110 (0%)

Query: 8   IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKF 67
           ++KGPW  EED +L+++++++GP +W +I S   L R  KSCRLRW N LRP +K G  F
Sbjct: 12  VKKGPWTPEEDIILVSYIQEHGPGNWRAIPSNTGLLRCSKSCRLRWTNYLRPGIKRG-DF 70

Query: 68  SLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQ 117
           +  EE+++I LQA  GN+WA IA+YLP RTDND+KN+W++  K+    LQ
Sbjct: 71  TEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKLEKLQ 120

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q4JL76|MYBA2_ORYSJ Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/110 (53%), Positives = 78/110 (70%), Gaps = 1/110 (0%)

Query: 5   REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNG 64
           REEIRKGPW  +ED  L+  V+ +G R W  I     L RTGKSCRLRWVN L P LK G
Sbjct: 5   REEIRKGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRG 64

Query: 65  CKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLAR 114
            + S  EER+++EL A++GN+W+RIA  LPGRTDN++KN+W +  ++ A+
Sbjct: 65  -RMSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQ 113

Transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P20027|MYB3_HORVU Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3

 Score =  125 bits (313), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 57/108 (52%), Positives = 77/108 (71%), Gaps = 1/108 (0%)

Query: 7   EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCK 66
           ++RKG W  EEDE L NH+ ++G   WSS+     L R GKSCRLRW+N LRP+LK GC 
Sbjct: 13  KVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGC- 71

Query: 67  FSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLAR 114
           FS +EE  ++ L    GN+W++IA++LPGRTDN++KNFW+S  K+  R
Sbjct: 72  FSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKLR 119

Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.

Hordeum vulgare (taxid: 4513)

>sp|Q4JL84|MYB59_ARATH Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2

 Score =  125 bits (313), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 81/114 (71%), Gaps = 1/114 (0%)

Query: 1   MEGKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN 60
           M+  +EE RKGPW  +ED +L+N V  +G R W  +     L RTGKSCRLRWVN L P 
Sbjct: 1   MKLVQEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPG 60

Query: 61  LKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLAR 114
           LK G K + +EER+V+EL A++GN+W++IA  LPGRTDN++KN+W +  ++ A+
Sbjct: 61  LKRG-KMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQ 113

Transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q53NK6|MYBA1_ORYSJ Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1

 Score =  124 bits (311), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 79/110 (71%), Gaps = 1/110 (0%)

Query: 5   REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNG 64
           REE+RKGPW  +ED  L+  V+ +G R W  +     L RTGKSCRLRWVN L P LK+G
Sbjct: 5   REEMRKGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKHG 64

Query: 65  CKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLAR 114
            + S +EE ++IEL A++GN+W+RIA  LPGRTDN++KN+W +  ++ A+
Sbjct: 65  -RMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQ 113

Transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
255541106	308	r2r3-myb transcription factor, putative	0.966	0.948	0.659	1e-101
225453442	309	PREDICTED: transcription factor MYB48 [V	0.970	0.948	0.635	1e-99
224063651	308	predicted protein [Populus trichocarpa]	0.973	0.954	0.674	3e-93
224137040	303	predicted protein [Populus trichocarpa]	0.970	0.966	0.653	2e-90
356523058	310	PREDICTED: transcription factor MYB44-li	0.966	0.941	0.591	7e-88
356503287	311	PREDICTED: myb-related protein 308-like	0.970	0.942	0.591	2e-85
58257682	316	hypothetical protein [Nicotiana tabacum]	0.973	0.930	0.562	2e-80
15232334	297	myb proto-oncogene protein, plant [Arabi	0.933	0.949	0.544	1e-79
297820904	303	hypothetical protein ARALYDRAFT_486519 [	0.943	0.940	0.544	3e-78
449527998	297	PREDICTED: uncharacterized protein LOC10	0.920	0.936	0.541	8e-70

>gi|255541106|ref|XP_002511617.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223548797|gb|EEF50286.1| r2r3-myb transcription factor, putative [Ricinus communis]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/311 (65%), Positives = 232/311 (74%), Gaps = 19/311 (6%)

Query: 2   EGKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNL 61
           EGK+EEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNL
Sbjct: 4   EGKKEEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNL 63

Query: 62  KNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQ---- 117
           KNGCKFS+EEER+VIELQAQFGNKWA+IATYLPGRTDNDVKNFWSSRQKRLARIL     
Sbjct: 64  KNGCKFSVEEERVVIELQAQFGNKWAKIATYLPGRTDNDVKNFWSSRQKRLARILHTSAS 123

Query: 118 NSATTSSSNSKSYKTKREFPASPDASTLEAPKFTSSMEEESSSKRQSCLSSNMMGNAELI 177
             +++SSSN K  + +++     D   LEAP F+ SMEEESS+  QSC SS+ + N E  
Sbjct: 124 TPSSSSSSNPKPRRPRKDTSVFLDLPALEAPIFSYSMEEESSAMAQSC-SSSYIENTESA 182

Query: 178 AMAPLP----EMINPKLLHFGASCENNPCTEPVLPIYFPQISQPQQDLPFSPESQELLAR 233
            + P P     ++  +L  F          EP+  I FPQ SQPQ D  FSPESQELLAR
Sbjct: 183 HVLPFPLAPDVVVKQELPSFDPDLIQ---AEPLPQIPFPQFSQPQPDNAFSPESQELLAR 239

Query: 234 LEDPYFFDVFGPVDAPPELSGQ-----PFLKPETSCRTGMKDENDKTVNPDAFFDDFPTD 288
           LEDPYFF++FG VDA PE+ GQ     P   P +SC  G +D  +  V PD FFDDFPTD
Sbjct: 240 LEDPYFFNMFGSVDA-PEIGGQLSLEPPLFDPVSSCINGARDARN-AVTPDTFFDDFPTD 297

Query: 289 MFDHIEPLPSP 299
           MFD+IEPLPSP
Sbjct: 298 MFDNIEPLPSP 308

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453442|ref|XP_002273472.1| PREDICTED: transcription factor MYB48 [Vitis vinifera] gi|297734583|emb|CBI16634.3| unnamed protein product [Vitis vinifera]

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 202/318 (63%), Positives = 233/318 (73%), Gaps = 25/318 (7%)

Query: 1   MEGKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN 60
           MEG+REEI+KGPWKAEEDEVLINHV KYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN
Sbjct: 1   MEGEREEIKKGPWKAEEDEVLINHVNKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN 60

Query: 61  LKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQNSA 120
           LKNGCKFS EEER+VIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQ + 
Sbjct: 61  LKNGCKFSSEEERLVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQ-TP 119

Query: 121 TTSSSNSKSYKTKREFPASPDASTLEAPKFTSSMEEESSSKRQSCLSSNMMGNAELIAMA 180
           ++S S+S+S+K   E P   D  TLE P F++SMEE+ SSK      S+ + N+E+I + 
Sbjct: 120 SSSPSSSQSHKNPGEVPFLHDFPTLEVPNFSASMEEDLSSK------SSYIDNSEMIKLV 173

Query: 181 PLPEMINPKL---------LHFGASCENNPCTEPVLPIYFPQISQPQQDLPFSPESQELL 231
            LP+M+ P L         L F  + +  PC E      FP + QPQ  L  SPESQEL+
Sbjct: 174 GLPDMVEPNLPALETNLFQLQFNHADQKTPCMESQSQFPFPHLPQPQPALTLSPESQELV 233

Query: 232 ARLEDPYFFDVFGPVDAPPELSG------QPFLKPETSCRT-GMKDENDKTVNPDAFFDD 284
           ARL+DP FFDVFG  D   EL        +P      SC++ G + EN  T  PD+FFDD
Sbjct: 234 ARLDDPNFFDVFGDRDVSQELGNGAQFPVEPTFFELESCKSCGKRKENPMT--PDSFFDD 291

Query: 285 FPTDMFDHIEPLPSPSDW 302
           FPTDMFDH+EPLPSPS+W
Sbjct: 292 FPTDMFDHMEPLPSPSEW 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063651|ref|XP_002301247.1| predicted protein [Populus trichocarpa] gi|222842973|gb|EEE80520.1| predicted protein [Populus trichocarpa]

 Score =  347 bits (891), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 209/310 (67%), Positives = 229/310 (73%), Gaps = 16/310 (5%)

Query: 1   MEG-KREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP 59
           MEG K+EEIRKGPWKAEEDEVLI HVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP
Sbjct: 7   MEGFKKEEIRKGPWKAEEDEVLIMHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP 66

Query: 60  NLKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQNS 119
           NLK+GCKFS EEER+VI+LQA+FGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQ S
Sbjct: 67  NLKHGCKFSAEEERVVIDLQAEFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQTS 126

Query: 120 ATTSSSNSKSYKTKREFPASPDASTLEAPKFTSSMEEESSSKRQSCLSSNMMGNAELIAM 179
            T SSSNS+  K+K E P   D  TLEAP F+SSMEEESSSK     SS+ + N E I M
Sbjct: 127 GTPSSSNSRPQKSKYEVPVFQDVPTLEAPMFSSSMEEESSSKAC---SSSYLDNPEHIRM 183

Query: 180 APLPEMINPKLLHFGASCENNPCTEPVLPIYFPQISQPQQDLPFSPESQELLARLEDPYF 239
            PLP ++      F     N    EP+  I FPQI QPQ  L FSPES ELLARL+DPYF
Sbjct: 184 MPLPSLVK---TDFPDGYANLGQYEPLSTIPFPQIPQPQPGLLFSPESHELLARLDDPYF 240

Query: 240 FDVFGPVDAPPELS-------GQPFLKPETSCRTGMKDENDKTVNPDAFFDDFPTDMFDH 292
            +V G  DA PEL        G P   P +SC     D  +  V PD  FD+FP+DMFDH
Sbjct: 241 LNVLGTADA-PELGDAAQFSLGPPLFDPVSSCMNSATDVKNH-VTPDTLFDEFPSDMFDH 298

Query: 293 IEPLPSPSDW 302
           IEPLPSPS+W
Sbjct: 299 IEPLPSPSEW 308

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137040|ref|XP_002327007.1| predicted protein [Populus trichocarpa] gi|222835322|gb|EEE73757.1| predicted protein [Populus trichocarpa]

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 204/312 (65%), Positives = 228/312 (73%), Gaps = 19/312 (6%)

Query: 1   MEG-KREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP 59
           MEG K+EEIRKGPWK EEDEVLINHVKKYGPRDWSSIRSKGLL RTGKSCRLRWVNKLRP
Sbjct: 1   MEGFKKEEIRKGPWKEEEDEVLINHVKKYGPRDWSSIRSKGLLHRTGKSCRLRWVNKLRP 60

Query: 60  NLKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQNS 119
           NLKNGCKFS EEER+VI+LQA+ GN+WARIATYLPGRTDNDVKNFWSSRQKRLARILQ S
Sbjct: 61  NLKNGCKFSAEEERVVIDLQAEIGNRWARIATYLPGRTDNDVKNFWSSRQKRLARILQTS 120

Query: 120 ATTSSS-NSKSYKTKREFPASPDASTLEAPKFTSSMEEESSSKRQSCLSSNMMGNAELIA 178
            T  SS NSK  ++K + P   D  T EAP F+SSMEEE SSK  +C SS+ + N E I 
Sbjct: 121 GTPPSSFNSKQQRSKNKVPVFLDVPTFEAPMFSSSMEEELSSK--AC-SSSYLENPEQIR 177

Query: 179 MAPLPEMINPKLLHFGASCENNPCT-EPVLPIYFPQISQPQQDLPFSPESQELLARLEDP 237
           M PLP ++  +L      C+ N    EP+  I FPQI QPQ DL FSPES ELLARL+DP
Sbjct: 178 MMPLPPLVKSEL----PGCDANLVQYEPMSGIPFPQIPQPQPDLVFSPESHELLARLDDP 233

Query: 238 YFFDVFGPVDAPPELS-------GQPFLKPETSCRTGMKDENDKTVNPDAFFDDFPTDMF 290
           YF +V G +DA PEL        G P   P +SC     D  +  V PD  FD+ P DMF
Sbjct: 234 YFLNVLGTIDA-PELGDTAQFSLGPPLFDPVSSCMNSPSDVKN-PVTPDTLFDELPPDMF 291

Query: 291 DHIEPLPSPSDW 302
           DHIEP PSPS+W
Sbjct: 292 DHIEPFPSPSEW 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523058|ref|XP_003530159.1| PREDICTED: transcription factor MYB44-like [Glycine max]

 Score =  330 bits (845), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 188/318 (59%), Positives = 220/318 (69%), Gaps = 26/318 (8%)

Query: 1   MEGKREE---IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKL 57
           M GK+E+   IRKGPWKAEEDE+L+ HVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKL
Sbjct: 1   MHGKKEQEEYIRKGPWKAEEDEMLLKHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKL 60

Query: 58  RPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQ 117
           RPNLKNGCKFSLEEER+VIELQAQFGN+WA+IA+YLPGRTDNDVKNFWSSRQKRLARILQ
Sbjct: 61  RPNLKNGCKFSLEEERVVIELQAQFGNRWAKIASYLPGRTDNDVKNFWSSRQKRLARILQ 120

Query: 118 NSATTSSSNSKSYKTKREFPASPDASTLEAPKFTSSMEEESSSKRQSCLSSNMMGNAELI 177
            SAT      KS K K   P+  D   L+ PKF+S  E E SSK QSC S   + N+E+I
Sbjct: 121 TSAT-----PKSQKNKTRVPSLHDVPILQPPKFSSPSEGEPSSKPQSC-SLPYIDNSEVI 174

Query: 178 AMAPLPEMINPKL-----LHFGAS---CENNPCTEPVLPIYFPQISQPQQDLPFSPESQE 229
            M  LP++I  +L     +H        EN   TE    I FPQI + Q  L FS E+Q+
Sbjct: 175 KMVSLPDLIKSELPSSDTIHVEQEFTLFENYKSTE---QIAFPQIPELQNGLTFSMENQD 231

Query: 230 LLARLEDPYFFDVFGPVDA------PPELSGQPFLKPETSCRTGMKDENDKTVNPDAFFD 283
           LL  +++P F +   P+DA      P    G PF +P  SCR G  D  D +   D+FFD
Sbjct: 232 LLPTIDEPCFIEELCPLDASEFGIGPQHPIGFPFFQPPGSCRLGTGDAIDNSKISDSFFD 291

Query: 284 DFPTDMFDHIEPLPSPSD 301
           DFP DMFDH++P  SPS+
Sbjct: 292 DFPVDMFDHMDPPASPSN 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503287|ref|XP_003520442.1| PREDICTED: myb-related protein 308-like [Glycine max]

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 188/318 (59%), Positives = 222/318 (69%), Gaps = 25/318 (7%)

Query: 1   MEGKREE---IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKL 57
           M GK+E+   IRKG W+AEEDEVL+NHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKL
Sbjct: 1   MHGKKEQEEYIRKGQWEAEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKL 60

Query: 58  RPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQ 117
           RPNLKNGCKFSLEEER+VIELQAQFGN+WA+IA+YLPGRTDNDVKNFWSSRQKRLARILQ
Sbjct: 61  RPNLKNGCKFSLEEERVVIELQAQFGNRWAKIASYLPGRTDNDVKNFWSSRQKRLARILQ 120

Query: 118 NSATTSSSNSKSYKTKREFPASPDASTLEAPKFTSSMEEESSSKRQSCLSSNMMGNAELI 177
            SATT     +S K K + P+  D  TLEAPKF+SS E E SSK Q+C +   + N+E+I
Sbjct: 121 TSATT----FRSQKNKTKVPSFLDVPTLEAPKFSSSSEGEPSSKPQTC-TLPYIDNSEVI 175

Query: 178 AMAPLPEMINPKL-----LHFGAS---CENNPCTEPVLPIYFPQISQPQQDLPFSPESQE 229
            M  LP++I  +L     +H        EN   TE    I FPQI + Q  L FS E+Q+
Sbjct: 176 QMVSLPDLIKSELPSSDTIHVEQEFTLFENYKSTE---QIAFPQIPELQNGLTFSMENQD 232

Query: 230 LLARLEDPYFFDVFGPVD------APPELSGQPFLKPETSCRTGMKDENDKTVNPDAFFD 283
           L+  +E+P F +   P D       P    G PF +P  SCR G +D  D     D+FFD
Sbjct: 233 LVPTIEEPCFIEDLCPFDVSEFGIGPQHPFGFPFFEPPGSCRFGTRDAIDNFKISDSFFD 292

Query: 284 DFPTDMFDHIEPLPSPSD 301
           D P DMFDH++P  SPS+
Sbjct: 293 DLPVDMFDHMDPPASPSN 310

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|58257682|dbj|BAC53935.2| hypothetical protein [Nicotiana tabacum]

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 172/306 (56%), Positives = 207/306 (67%), Gaps = 12/306 (3%)

Query: 1   MEGKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN 60
            +   +EI+KGPWKAEED+VL+NHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN
Sbjct: 19  FDHNEDEIKKGPWKAEEDQVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN 78

Query: 61  LKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQNSA 120
           LKNG KFS EEER VIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARIL+ SA
Sbjct: 79  LKNGVKFSAEEERTVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILRTSA 138

Query: 121 TTSSSNSKSYKTKREFPASPDASTLEAPKFTSSMEEESSSKRQSCLSSNMMGNAE-LIAM 179
              +    +     +     D+  +EAPKF+SS ++E S  +    SS+ + N+  LI M
Sbjct: 139 PQPAKPQNNNNNGSQNAVFQDSPPIEAPKFSSSTDQEVSLSKSQSRSSSYIDNSHNLINM 198

Query: 180 APLPEMINPKLLHFGASCENNPCT--EPVLPIYFPQISQPQQDLPFSPESQELLARLEDP 237
            PLPE++NP  + F ++      T  +  L I   + S  Q D     E+QE       P
Sbjct: 199 VPLPELVNPNSIAFESNLLQLDFTPNDKKLGI---ESSHIQTDFTLPFENQE----FNIP 251

Query: 238 YFFDVFGPVDAPPELSGQ-PFLKPETSCRTGMKDENDKTVNPDAFFDDFPTDMFDHIEPL 296
            F DVFG  +     + Q PF++  + C   +  E DK + PD+F DDFP DMFDHIEPL
Sbjct: 252 NFIDVFGQFNGSELDNVQVPFVE-RSCCDNIVTREIDKPLTPDSFIDDFPLDMFDHIEPL 310

Query: 297 PSPSDW 302
           PSPS+W
Sbjct: 311 PSPSEW 316

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232334|ref|NP_191605.1| myb proto-oncogene protein, plant [Arabidopsis thaliana] gi|18766549|gb|AAL79015.1|AF469468_1 putative transcription factor [Arabidopsis thaliana] gi|7287994|emb|CAB81832.1| myb protein-like [Arabidopsis thaliana] gi|302589002|gb|ADL59373.1| duo pollen 1 [Arabidopsis thaliana] gi|332646543|gb|AEE80064.1| myb proto-oncogene protein, plant [Arabidopsis thaliana]

 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 171/314 (54%), Positives = 202/314 (64%), Gaps = 32/314 (10%)

Query: 1   MEGKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN 60
           ME K+EEI+KGPWKAEEDEVLINHVK+YGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN
Sbjct: 1   MEAKKEEIKKGPWKAEEDEVLINHVKRYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN 60

Query: 61  LKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQNSA 120
           LKNGCKFS +EER VIELQ++FGNKWARIATYLPGRTDNDVKNFWSSRQKRLARIL NS+
Sbjct: 61  LKNGCKFSADEERTVIELQSEFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILHNSS 120

Query: 121 TTSSSNSKSYKTKREFPASPDASTLEAPKFTSSMEEESSSKRQSC-----LSSNMMGNAE 175
             SSS+     +        +   +        + EE  +   SC      SS+ +G+  
Sbjct: 121 DASSSSFNPKSSSSHRLKGKNVKPIRQSSQGFGLVEEEVTVSSSCSQMVPYSSDQVGDEV 180

Query: 176 LIAMAPLPEMINPKLLHFGASCENNP---CTEPVLPIYFPQISQPQQDL--PFSPESQEL 230
           L            +L   G   E+ P    T+ VL  Y    +   Q    PFSPES+EL
Sbjct: 181 L------------RLPDLGVKLEHQPFAFGTDLVLAEYSDSQNDANQQAISPFSPESREL 228

Query: 231 LARLEDPYFFDVFGPVDAPPELSG--QPFLKPE---TSCRTGMKDENDKTVNPDAFFDDF 285
           LARL+DP+++D+ GP D+   L    QPF +P      CR   KDE       D F DDF
Sbjct: 229 LARLDDPFYYDILGPADSSEPLFALPQPFFEPSPVPRRCRHVSKDE-----EADVFLDDF 283

Query: 286 PTDMFDHIEPLPSP 299
           P DMFD ++P+PSP
Sbjct: 284 PADMFDQVDPIPSP 297

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820904|ref|XP_002878335.1| hypothetical protein ARALYDRAFT_486519 [Arabidopsis lyrata subsp. lyrata] gi|297324173|gb|EFH54594.1| hypothetical protein ARALYDRAFT_486519 [Arabidopsis lyrata subsp. lyrata]

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 171/314 (54%), Positives = 212/314 (67%), Gaps = 29/314 (9%)

Query: 1   MEGKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN 60
           +E K+EEI+KGPWKAEEDEVLINHVK+YGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN
Sbjct: 4   LETKKEEIKKGPWKAEEDEVLINHVKRYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN 63

Query: 61  LKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQN-- 118
           LKNGCKFS +EER VIELQ++FGNKWARIATYLPGRTDNDVKNFWSSRQKRLARIL N  
Sbjct: 64  LKNGCKFSADEERTVIELQSEFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILHNSS 123

Query: 119 ---SATTSSSNSKSYKTKREFPASPDASTLEAPKFTSSMEEE---SSSKRQSCLSSNMMG 172
              S++ +  +S S++ K +    P   +  A +    +EEE   +SS  Q   +S+   
Sbjct: 124 DASSSSFNPKSSSSHRVKGK-NVKPIRQSFNASQGFGLVEEEVTVASSCSQMVPNSSDQF 182

Query: 173 NAELIAMAPLPEMINPKLLHFGASCENNPCTEPVLPIY--FPQISQPQQDLPFSPESQEL 230
           + E + +  L   +  +   FG        T+ VL  +   P  +  Q  +PFSPES+EL
Sbjct: 183 DDETLRLPDLGVKLEHQPFAFG--------TDLVLTEFSDSPNDANQQGIIPFSPESREL 234

Query: 231 LARLEDPYFFDVFGPVDAPPELSG--QPFLKPETS---CRTGMKDENDKTVNPDAFFDDF 285
           LARL+DP+++D+ GP D+   L    QPF +P  +   CR   KDE      PD F DDF
Sbjct: 235 LARLDDPFYYDILGPADSSEPLFALPQPFFEPSPAPRRCRHVSKDE-----EPDVFLDDF 289

Query: 286 PTDMFDHIEPLPSP 299
           P DMFD ++P+ SP
Sbjct: 290 PADMFDQVDPIRSP 303

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527998|ref|XP_004170994.1| PREDICTED: uncharacterized protein LOC101229420 [Cucumis sativus]

 Score =  270 bits (689), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 164/303 (54%), Positives = 196/303 (64%), Gaps = 25/303 (8%)

Query: 6   EEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGC 65
           E +RKGPWK EEDEVL+NHV ++GPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGC
Sbjct: 6   ESLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGC 65

Query: 66  KFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQNSATTSSS 125
           KF+ EEE++VIELQAQFGNKWA+IATYLPGRTDNDVKNFWSSRQKRLAR+LQ S   S  
Sbjct: 66  KFTAEEEKMVIELQAQFGNKWAKIATYLPGRTDNDVKNFWSSRQKRLARLLQTSPAPSKL 125

Query: 126 NSKSYKTKREFPASPDASTLEAPKFTSSMEEESSSKRQSCLSSNMMGNAELIAM-APLPE 184
              +   K+E P   D  ++EAPK +S+ E ESS +  SCLSS    N E + M   +P+
Sbjct: 126 QRSA---KKEKPIDFDIPSMEAPKLSSASEGESSLRPMSCLSSCCAENVEPLNMFCSVPD 182

Query: 185 MINPKLLHFGASCENNPCTEPVL-PIYFPQISQ-PQQDLPFSPESQELLARLEDPYFFDV 242
             +PKLL FG         +P    I F Q S    Q L  +  SQ     L DP  FDV
Sbjct: 183 PYSPKLLGFGQD-----FLQPEFNSIKFEQQSNFHTQSLSSTFSSQ----GLHDPN-FDV 232

Query: 243 FGPVDAPPEL-------SGQPFLKPETSCRTGMKDENDKTVNPDAFFDDFPTDMFDHIEP 295
           F       +L       SG  F +P   C +      +   NP++FF +FP D+F+ +EP
Sbjct: 233 FLETLDVSQLTNEVQFPSGLQFYEPMECC-SSHDVVRENVDNPESFFSEFPADIFE-LEP 290

Query: 296 LPS 298
           LPS
Sbjct: 291 LPS 293

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
TAIR|locus:2103386	297	DUO1 "DUO POLLEN 1" [Arabidops	0.943	0.959	0.540	7.9e-78
TAIR|locus:2116447	389	MYB97 "myb domain protein 97"	0.721	0.560	0.382	4e-35
TAIR|locus:2080697	553	MYB65 "myb domain protein 65"	0.367	0.200	0.544	1.7e-32
TAIR|locus:2162585	319	MYB49 "myb domain protein 49"	0.367	0.347	0.486	2.3e-31
TAIR|locus:2152830	520	MYB33 "myb domain protein 33"	0.350	0.203	0.542	2.4e-31
TAIR|locus:2060241	490	MYB101 "myb domain protein 101	0.367	0.226	0.526	4.2e-31
TAIR|locus:2151938	523	MYB120 "myb domain protein 120	0.350	0.202	0.560	5.8e-31
TAIR|locus:2160349	338	MYB76 "myb domain protein 76"	0.350	0.313	0.518	2.6e-30
TAIR|locus:2059329	427	MYB81 "myb domain protein 81"	0.364	0.257	0.549	3e-30
TAIR|locus:2146804	352	MYB86 "myb domain protein 86"	0.360	0.309	0.549	3e-30

TAIR|locus:2103386 DUO1 "DUO POLLEN 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
 Identities = 168/311 (54%), Positives = 199/311 (63%)

Query:     1 MEGKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN 60
             ME K+EEI+KGPWKAEEDEVLINHVK+YGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN
Sbjct:     1 MEAKKEEIKKGPWKAEEDEVLINHVKRYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN 60

Query:    61 LKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQNXX 120
             LKNGCKFS +EER VIELQ++FGNKWARIATYLPGRTDNDVKNFWSSRQKRLARIL N  
Sbjct:    61 LKNGCKFSADEERTVIELQSEFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILHNSS 120

Query:   121 XXXXXXXXXXXXXREFPASPDASTLEAPKFTSSMEEESSSKRQSC-----LSSNMMGNAE 175
                                 +   +        + EE  +   SC      SS+ +G+ E
Sbjct:   121 DASSSSFNPKSSSSHRLKGKNVKPIRQSSQGFGLVEEEVTVSSSCSQMVPYSSDQVGD-E 179

Query:   176 LIAMAPLPEMINPKLLHFGASCENNPCTEPVLPIYFP-QISQPQQDL-PFSPESQELLAR 233
             ++ +  L   +  +   FG        T+ VL  Y   Q    QQ + PFSPES+ELLAR
Sbjct:   180 VLRLPDLGVKLEHQPFAFG--------TDLVLAEYSDSQNDANQQAISPFSPESRELLAR 231

Query:   234 LEDPYFFDVFGPVDAPPELSG--QPFLKPET---SCRTGMKDENDKTVNPDAFFDDFPTD 288
             L+DP+++D+ GP D+   L    QPF +P      CR   KDE       D F DDFP D
Sbjct:   232 LDDPFYYDILGPADSSEPLFALPQPFFEPSPVPRRCRHVSKDEE-----ADVFLDDFPAD 286

Query:   289 MFDHIEPLPSP 299
             MFD ++P+PSP
Sbjct:   287 MFDQVDPIPSP 297

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0048235 "pollen sperm cell differentiation" evidence=IMP

TAIR|locus:2116447 MYB97 "myb domain protein 97" [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 86/225 (38%), Positives = 126/225 (56%)

Query:     2 EGKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNL 61
             EG    ++KGPW   EDE L  +V++YG  +W+S++ K  L R GKSCRLRW N LRPNL
Sbjct:    13 EGGGVVLKKGPWTVAEDETLAAYVREYGEGNWNSVQKKTWLARCGKSCRLRWANHLRPNL 72

Query:    62 KNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARI-LQNXX 120
             + G  F+ EEER++I+L +Q GNKWAR+A  LPGRTDN++KN+W++R KR  R  L    
Sbjct:    73 RKG-SFTPEEERLIIQLHSQLGNKWARMAAQLPGRTDNEIKNYWNTRLKRFQRQGLPLYP 131

Query:   121 XXXXXXXXXXXXXREFPASPDASTLEAPKFTSSMEEESSSKRQSCLSSNMMGNAELIAMA 180
                           + P+SP  S   A  FT  + +  S   + C ++     A  I+ +
Sbjct:   132 PEYSQNNHQQQMYPQQPSSPLPSQTPASSFTFPLLQPPSLCPKRCYNTAFSPKASYIS-S 190

Query:   181 PLPEMIN-PKLLHFGASCENNPCTEPVLPIYFPQISQPQQDLPFS 224
             P   +++ P  LH  +S  +   T PV  +   ++S  Q  +P+S
Sbjct:   191 PTNFLVSSPTFLHTHSSLSSYQSTNPVYSMKH-ELSSNQ--IPYS 232

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2080697 MYB65 "myb domain protein 65" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 1.7e-32, P = 1.7e-32
 Identities = 61/112 (54%), Positives = 87/112 (77%)

Query:     3 GKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLK 62
             GKR  ++KGPW + ED +LI++VKK+G  +W++++    L R GKSCRLRW N LRPNLK
Sbjct:    36 GKRSVLKKGPWTSTEDGILIDYVKKHGEGNWNAVQKHTSLARCGKSCRLRWANHLRPNLK 95

Query:    63 NGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLAR 114
              G  FS EEE++++E+ A+ GNKWA++A +LPGRTDN++KN+W++R KR  R
Sbjct:    96 KGA-FSQEEEQLIVEMHAKMGNKWAQMAEHLPGRTDNEIKNYWNTRIKRRQR 146

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS

GO:0048235 "pollen sperm cell differentiation" evidence=IGI

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0045926 "negative regulation of growth" evidence=IMP

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

TAIR|locus:2162585 MYB49 "myb domain protein 49" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
 Identities = 55/113 (48%), Positives = 82/113 (72%)

Query:     4 KREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKN 63
             +  E++KGPW  EEDE L+ +++ +GP  W ++     L+R GKSCRLRW N LRP++K 
Sbjct:     8 EESEVKKGPWTPEEDEKLVGYIQTHGPGKWRTLPKNAGLKRCGKSCRLRWTNYLRPDIKR 67

Query:    64 GCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSR-QKRLARI 115
             G +FSL+EE  +I+L    GNKW+ IA +LPGRTDN++KN+W++  +K+L R+
Sbjct:    68 G-EFSLQEEETIIQLHRLLGNKWSAIAIHLPGRTDNEIKNYWNTHIKKKLLRM 119

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2152830 MYB33 "myb domain protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 2.4e-31, P = 2.4e-31
 Identities = 58/107 (54%), Positives = 84/107 (78%)

Query:     8 IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKF 67
             ++KGPW + ED++LI++V K+G  +W++++    L R GKSCRLRW N LRPNLK G  F
Sbjct:    32 LKKGPWSSAEDDILIDYVNKHGEGNWNAVQKHTSLFRCGKSCRLRWANHLRPNLKKGA-F 90

Query:    68 SLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLAR 114
             S EEE++++EL A+ GN+WAR+A +LPGRTDN++KN+W++R KR  R
Sbjct:    91 SQEEEQLIVELHAKMGNRWARMAAHLPGRTDNEIKNYWNTRIKRRQR 137

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS

GO:0048235 "pollen sperm cell differentiation" evidence=IGI

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0045926 "negative regulation of growth" evidence=IMP

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

TAIR|locus:2060241 MYB101 "myb domain protein 101" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 60/114 (52%), Positives = 85/114 (74%)

Query:     1 MEGKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN 60
             MEG+   ++KGPW   ED +L  +V+K+G  +W++++    L R GKSCRLRW N LRPN
Sbjct:    13 MEGRG--LKKGPWTTTEDAILTEYVRKHGEGNWNAVQKNSGLLRCGKSCRLRWANHLRPN 70

Query:    61 LKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLAR 114
             LK G  F+ +EE+I+I+L A+ GNKWAR+A+ LPGRTDN++KN+W++R KR  R
Sbjct:    71 LKKG-SFTPDEEKIIIDLHAKLGNKWARMASQLPGRTDNEIKNYWNTRMKRRQR 123

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

TAIR|locus:2151938 MYB120 "myb domain protein 120" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 5.8e-31, P = 5.8e-31
 Identities = 60/107 (56%), Positives = 82/107 (76%)

Query:     8 IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKF 67
             ++KGPW A EDE+L  +V++ G  +W++++    L R GKSCRLRW N LRPNLK G  F
Sbjct:    26 LKKGPWTAAEDEILAAYVRENGEGNWNAVQKNTGLARCGKSCRLRWANHLRPNLKKG-SF 84

Query:    68 SLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLAR 114
             + +EER++I+L AQ GNKWAR+A  LPGRTDN++KN+W++R KRL R
Sbjct:    85 TGDEERLIIQLHAQLGNKWARMAAQLPGRTDNEIKNYWNTRLKRLLR 131

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009860 "pollen tube growth" evidence=IMP

TAIR|locus:2160349 MYB76 "myb domain protein 76" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
 Identities = 56/108 (51%), Positives = 77/108 (71%)

Query:     6 EEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGC 65
             E ++KG W  EED+ LI+++  +G   W  I  K  L+R GKSCRLRW N L+P++K G 
Sbjct:    10 EGLKKGAWTTEEDKKLISYIHDHGEGGWRDIPEKAGLKRCGKSCRLRWTNYLKPDIKRG- 68

Query:    66 KFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSR-QKRL 112
             +FS EEE+I+I L A  GNKW+ IA +LP RTDN+VKN+W++  +KRL
Sbjct:    69 EFSYEEEQIIIMLHASRGNKWSVIARHLPKRTDNEVKNYWNTHLKKRL 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0010439 "regulation of glucosinolate biosynthetic process" evidence=IMP

GO:0006863 "purine nucleobase transport" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009625 "response to insect" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2059329 MYB81 "myb domain protein 81" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 61/111 (54%), Positives = 82/111 (73%)

Query:     5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNG 64
             ++   KGPW   ED +LI +V K+G  +W+++++   L R GKSCRLRWVN LRP+LK G
Sbjct:    17 KKSFTKGPWTQAEDNLLIAYVDKHGDGNWNAVQNNSGLSRCGKSCRLRWVNHLRPDLKKG 76

Query:    65 CKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARI 115
               F+ +EE+ VIEL A  GNKWAR+A  LPGRTDN++KNFW++R KRL R+
Sbjct:    77 A-FTEKEEKRVIELHALLGNKWARMAEELPGRTDNEIKNFWNTRLKRLQRL 126

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2146804 MYB86 "myb domain protein 86" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 61/111 (54%), Positives = 84/111 (75%)

Query:     5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNG 64
             ++++RKG W  EEDE L+N++ ++G   WSS+     LQR GKSCRLRW+N LRP+LK G
Sbjct:     9 KQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 68

Query:    65 CKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSS-RQKRLAR 114
               FS +EE ++IEL A  GN+W++IAT LPGRTDN++KNFW+S  +K+L R
Sbjct:    69 A-FSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRR 118

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019129001 SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (309 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	302
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	5e-35
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	7e-28
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	5e-17
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-13
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	6e-12
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	5e-11
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	7e-11
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-09
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	6e-09
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	5e-04
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	0.002

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  131 bits (330), Expect = 5e-35
 Identities = 60/110 (54%), Positives = 80/110 (72%), Gaps = 1/110 (0%)

Query: 5   REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNG 64
           ++++RKG W  EEDE L+ H+ KYG   WSS+  +  LQR GKSCRLRW+N LRP+LK G
Sbjct: 9   KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRG 68

Query: 65  CKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLAR 114
             FS +EE ++IEL A  GN+W++IA  LPGRTDN++KN W+S  K+  R
Sbjct: 69  T-FSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLR 117

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  107 bits (269), Expect = 7e-28
 Identities = 49/108 (45%), Positives = 76/108 (70%), Gaps = 2/108 (1%)

Query: 8   IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKF 67
           +++GPW  EEDE+L++ +KK G   W S+  +  L R GKSCRLRW+N LRP++K G   
Sbjct: 23  MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRG-GI 81

Query: 68  SLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSR-QKRLAR 114
           + +EE +++ L    GN+W+ IA  +PGRTDN++KN+W++  +K+L R
Sbjct: 82  TSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLR 129

Length = 249

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 81.0 bits (200), Expect = 5e-17
 Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 2/105 (1%)

Query: 1   MEGKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN 60
           ++  + + + G WK  EDE L   VKK GP +WS + S  L+  TGK    RW N L P 
Sbjct: 11  IKLMQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASL-LISSTGKQSSNRWNNHLNPQ 69

Query: 61  LKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFW 105
           LK    +S EE+  +I+L  + G +W+ IA Y   RT       +
Sbjct: 70  LKKK-NWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERY 113

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 63.3 bits (155), Expect = 2e-13
 Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKL 57
          +GPW  EEDE+LI  VKK+G  +WS I +K L  RT   C+ RW N L
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKI-AKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 59.2 bits (144), Expect = 6e-12
 Identities = 27/50 (54%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP 59
          KG W  EEDE+LI  VKKYG  +W  I +K L  RT + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKI-AKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 56.9 bits (138), Expect = 5e-11
 Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 13 WKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEE 72
          W  EEDE L+  V+KYG  DW  I  +  L RT  +CR RW  KLRP    G  ++ EE+
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQIAEE--LGRTPSACRDRWRRKLRPKRSRG-PWTKEED 56

Query: 73 RIV 75
          + +
Sbjct: 57 QRL 59

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 56.4 bits (137), Expect = 7e-11
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 66  KFSLEEERIVIELQAQFGNK-WARIATYLPGRTDNDVKNFW 105
            ++ EE+ ++IE   + GN  W++IA +LPGRTDN  KN W
Sbjct: 3   PWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRW 43

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 25/46 (54%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 12 PWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKL 57
          PW  EEDE+L+  VKKYG  +W  I +K L  RT K CR RW N L
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKI-AKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 52.6 bits (127), Expect = 1e-09
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 66  KFSLEEERIVIELQAQFG-NKWARIATYLPGRTDNDVKNFW 105
            ++ EE+ +++E   ++G N W +IA  LPGRT    +  W
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERW 41

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 50.7 bits (122), Expect = 6e-09
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 66  KFSLEEERIVIELQAQFG-NKWARIATYLPGRTDNDVKNFW 105
           +++ EE+ ++IEL  ++G N W +IA  LPGRT    +  W
Sbjct: 3   EWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERW 43

Length = 49

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 12 PWKAEEDEVLINHVKKYGPRDWSSIR--SKGLLQRTGKSCRLRWVNKLR 58
           W  EEDE L+  V+KYG  +W+ I      +  RT    + +W N  +
Sbjct: 2  KWTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVDLKDKWRNLKK 50

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 67  FSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSS 107
           ++ EE+  +++L  ++GN W +IA  L GRT +  ++ W  
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRR 40

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
PLN03091	459	hypothetical protein; Provisional	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.78
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.57
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.57
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.56
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.43
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.33
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.31
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.22
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.16
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.16
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.07
PLN03212	249	Transcription repressor MYB5; Provisional	98.98
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.98
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.81
PLN03091	459	hypothetical protein; Provisional	98.8
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.77
KOG0048	238	consensus Transcription factor, Myb superfamily [T	98.75
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.01
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.69
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.66
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.61
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.25
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.18
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.03
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	97.01
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	96.9
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.51
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.49
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	96.4
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.26
PRK13923	170	putative spore coat protein regulator protein YlbO	96.09
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	96.08
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.07
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	95.99
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	95.12
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	95.05
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	94.47
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	94.23
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.12
KOG4282	345	consensus Transcription factor GT-2 and related pr	93.92
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	93.08
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	92.86
KOG2656	445	consensus DNA methyltransferase 1-associated prote	92.69
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	92.01
KOG1194	534	consensus Predicted DNA-binding protein, contains	91.89
PRK13923	170	putative spore coat protein regulator protein YlbO	90.12
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	87.84
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	86.99
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	86.39
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	80.55

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=3.1e-35  Score=270.19  Aligned_cols=114  Identities=46%  Similarity=0.832  Sum_probs=106.3

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHh
Q 038795            3 GKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQF   82 (302)
Q Consensus         3 ~kK~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~   82 (302)
                      .||+.+.||+||+|||++|+++|++||.++|..|+..+..+|++++||+||.|||+|.|++| .||+|||.+|+++|..+
T Consensus         2 ~kk~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg-~fT~eEe~~Ii~lH~~~   80 (238)
T KOG0048|consen    2 VRNPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRG-NFSDEEEDLIIKLHALL   80 (238)
T ss_pred             CCCccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCC-CCCHHHHHHHHHHHHHH
Confidence            35666789999999999999999999999999998776669999999999999999999999 89999999999999999


Q ss_pred             CCcchhhhccCCCCCHHHHHHHHHHHHHHHHHHhc
Q 038795           83 GNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQ  117 (302)
Q Consensus        83 G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r~~~  117 (302)
                      |++|+.||++|||||+|+|||+|++.+||+.+...
T Consensus        81 GNrWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   81 GNRWSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             CcHHHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999988766554

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-33  Score=275.88  Aligned_cols=111  Identities=54%  Similarity=1.004  Sum_probs=104.3

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhC
Q 038795            4 KREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFG   83 (302)
Q Consensus         4 kK~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G   83 (302)
                      -|++++||+||+|||++|+++|.+||..+|..||..+.++|+++|||+||.++|+|.|+++ +||.|||++|+++|.+||
T Consensus         8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKg-pWT~EED~lLLeL~k~~G   86 (459)
T PLN03091          8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRG-TFSQQEENLIIELHAVLG   86 (459)
T ss_pred             cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCC-CCCHHHHHHHHHHHHHhC
Confidence            3578999999999999999999999999999997665579999999999999999999999 999999999999999999


Q ss_pred             CcchhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 038795           84 NKWARIATYLPGRTDNDVKNFWSSRQKRLARI  115 (302)
Q Consensus        84 ~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r~  115 (302)
                      ++|++||++|+|||+++|||||+.++||..+.
T Consensus        87 nKWskIAk~LPGRTDnqIKNRWnslLKKklr~  118 (459)
T PLN03091         87 NRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQ  118 (459)
T ss_pred             cchHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999886553

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=8.1e-33  Score=253.51  Aligned_cols=110  Identities=42%  Similarity=0.903  Sum_probs=103.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 038795            5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGN   84 (302)
Q Consensus         5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~   84 (302)
                      |.+++||+||+|||++|+++|++||..+|..||.++.++|+++|||+||.++|+|.++++ +||.|||++|++++.+||+
T Consensus        20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kg-pWT~EED~lLlel~~~~Gn   98 (249)
T PLN03212         20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRG-GITSDEEDLILRLHRLLGN   98 (249)
T ss_pred             cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccC-CCChHHHHHHHHHHHhccc
Confidence            568999999999999999999999999999997764579999999999999999999999 9999999999999999999


Q ss_pred             cchhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 038795           85 KWARIATYLPGRTDNDVKNFWSSRQKRLARI  115 (302)
Q Consensus        85 kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r~  115 (302)
                      +|+.||++|+|||+++|||||+.++++....
T Consensus        99 KWs~IAk~LpGRTDnqIKNRWns~LrK~l~r  129 (249)
T PLN03212         99 RWSLIAGRIPGRTDNEIKNYWNTHLRKKLLR  129 (249)
T ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHhHHHHh
Confidence            9999999999999999999999998876554

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.78  E-value=1.5e-19  Score=182.52  Aligned_cols=111  Identities=25%  Similarity=0.552  Sum_probs=97.9

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHh
Q 038795            3 GKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQF   82 (302)
Q Consensus         3 ~kK~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~   82 (302)
                      .-.+.+++|+||.+||.+|+.+|.+||.++|.+|. ..+|||+..|||+||.|.|+...|.+ .||-.||+.|+++|.+|
T Consensus       353 ~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R-~~vPnRSdsQcR~RY~nvL~~s~K~~-rW~l~edeqL~~~V~~Y  430 (939)
T KOG0049|consen  353 TLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVR-QAVPNRSDSQCRERYTNVLNRSAKVE-RWTLVEDEQLLYAVKVY  430 (939)
T ss_pred             ccCccccCCCCCCHHHHHHHHHHHHhCccchhhHH-HhcCCccHHHHHHHHHHHHHHhhccC-ceeecchHHHHHHHHHH
Confidence            44578999999999999999999999999999995 45999999999999999999999999 89999999999999999


Q ss_pred             C-CcchhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 038795           83 G-NKWARIATYLPGRTDNDVKNFWSSRQKRLARI  115 (302)
Q Consensus        83 G-~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r~  115 (302)
                      | ++|.+||.+||+||..|...|=..++..+.+.
T Consensus       431 G~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k~rl  464 (939)
T KOG0049|consen  431 GKGNWAKCAMLLPKKTSRQLRRRRLRLIAAKLRL  464 (939)
T ss_pred             ccchHHHHHHHccccchhHHHHHHHHHHHHHHHH
Confidence            9 88999999999999977665544444433333

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.57  E-value=2.4e-15  Score=152.48  Aligned_cols=105  Identities=25%  Similarity=0.520  Sum_probs=94.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC---CCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 038795            8 IRKGPWKAEEDEVLINHVKKYGP---RDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGN   84 (302)
Q Consensus         8 lrKG~WT~EED~~L~~~V~~~G~---~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~   84 (302)
                      +.+..||+|||.+|+.+|+....   -+|.+|. ..|+||+..|..-||...|+|.+++| .||.+||.+|+.+|.+||+
T Consensus       303 L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV-~Ympgr~~~qLI~R~~~~LdPsikhg-~wt~~ED~~L~~AV~~Yg~  380 (939)
T KOG0049|consen  303 LSEKEWSEEEDTKLIALVKITSINSHIQWDKVV-QYMPGRTRQQLITRFSHTLDPSVKHG-RWTDQEDVLLVCAVSRYGA  380 (939)
T ss_pred             HHhhhcchhhhHHHHHHHHHhhccCccchHHHH-HhcCCcchhhhhhhheeccCccccCC-CCCCHHHHHHHHHHHHhCc
Confidence            34567999999999999998743   4799995 56999999999999999999999999 9999999999999999996


Q ss_pred             c-chhhhccCCCCCHHHHHHHHHHHHHHHHH
Q 038795           85 K-WARIATYLPGRTDNDVKNFWSSRQKRLAR  114 (302)
Q Consensus        85 k-Ws~IAk~LpgRT~nq~KnRw~~l~kr~~r  114 (302)
                      + |.+|-+.+|||++.||+.||.+.+.+..+
T Consensus       381 kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K  411 (939)
T KOG0049|consen  381 KDWAKVRQAVPNRSDSQCRERYTNVLNRSAK  411 (939)
T ss_pred             cchhhHHHhcCCccHHHHHHHHHHHHHHhhc
Confidence            5 99999999999999999999887765444

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.57  E-value=2.2e-15  Score=151.48  Aligned_cols=111  Identities=35%  Similarity=0.624  Sum_probs=101.9

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHH
Q 038795            2 EGKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQ   81 (302)
Q Consensus         2 ~~kK~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~   81 (302)
                      +.+..+++.|.|+..||+.|..+|+.||+.+|..||+. +.-|++++|+.||.++++|.++++ .|+.+||..|+.+..+
T Consensus        12 ~~~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~-~~~~~~kq~~~rw~~~lnp~lk~~-~~~~eed~~li~l~~~   89 (512)
T COG5147          12 KLMQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASL-LISSTGKQSSNRWNNHLNPQLKKK-NWSEEEDEQLIDLDKE   89 (512)
T ss_pred             ccccceecCCCCCCcchhHHHHHHhhcccccHHHHHHH-hcccccccccchhhhhhchhcccc-cccHHHHHHHHHHHHh
Confidence            34455788999999999999999999999999999876 666999999999999999999999 8999999999999999


Q ss_pred             hCCcchhhhccCCCCCHHHHHHHHHHHHHHHHH
Q 038795           82 FGNKWARIATYLPGRTDNDVKNFWSSRQKRLAR  114 (302)
Q Consensus        82 ~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r  114 (302)
                      +|.+|+.||.++++||+.+|.+||...+.....
T Consensus        90 ~~~~wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          90 LGTQWSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             cCchhhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            999999999999999999999999987765433

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.56  E-value=2.2e-15  Score=110.02  Aligned_cols=60  Identities=48%  Similarity=0.937  Sum_probs=52.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHH
Q 038795           13 WKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIV   75 (302)
Q Consensus        13 WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lL   75 (302)
                      ||.|||++|+++|..|| .+|..||.. |+.|++.+|+.||.++|++.++++ +||.+||.+|
T Consensus         1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~-l~~Rt~~~~~~r~~~~l~~~~~~~-~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG-NDWKKIAEH-LGNRTPKQCRNRWRNHLRPKISRG-PWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT-S-HHHHHHH-STTS-HHHHHHHHHHTTSTTSTSS-SSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-cCHHHHHHH-HCcCCHHHHHHHHHHHCcccccCC-CcCHHHHhcC
Confidence            99999999999999999 689999554 766999999999999999999998 8999999987

...

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=3.2e-14  Score=141.42  Aligned_cols=106  Identities=33%  Similarity=0.601  Sum_probs=97.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCCcc
Q 038795            7 EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNKW   86 (302)
Q Consensus         7 ~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~kW   86 (302)
                      .++.|.|+.-||+.|..+|.+||.+.|++|++. +.-++++||+.||..+|+|.|++. .|+.+||.+|+.+.......|
T Consensus         4 ~~kggvwrntEdeilkaav~kyg~nqws~i~sl-l~~kt~rqC~~rw~e~ldp~i~~t-ews~eederlLhlakl~p~qw   81 (617)
T KOG0050|consen    4 EIKGGVWRNTEDEVLKAAVMKYGKNQWSRIASL-LNRKTARQCKARWEEWLDPAIKKT-EWSREEDERLLHLAKLEPTQW   81 (617)
T ss_pred             EEecceecccHHHHHHHHHHHcchHHHHHHHHH-HhhcchhHHHHHHHHHhCHHHhhh-hhhhhHHHHHHHHHHhcCCcc
Confidence            357899999999999999999999999999665 888999999999999999999887 899999999999999999999


Q ss_pred             hhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 038795           87 ARIATYLPGRTDNDVKNFWSSRQKRLARI  115 (302)
Q Consensus        87 s~IAk~LpgRT~nq~KnRw~~l~kr~~r~  115 (302)
                      ..||..+ |||++||-.||+.++-.....
T Consensus        82 rtIa~i~-gr~~~qc~eRy~~ll~~~~s~  109 (617)
T KOG0050|consen   82 RTIADIM-GRTSQQCLERYNNLLDVYVSY  109 (617)
T ss_pred             chHHHHh-hhhHHHHHHHHHHHHHHHHhh
Confidence            9999999 999999999999988655443

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.33  E-value=1.9e-13  Score=96.09  Aligned_cols=47  Identities=49%  Similarity=0.962  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccC-CCCcccccccccccc
Q 038795           10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLL-QRTGKSCRLRWVNKL   57 (302)
Q Consensus        10 KG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~-~Rt~~qCR~Rw~~~L   57 (302)
                      ||+||+|||++|+++|.+||..+|..||.. ++ +||+.||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~-~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKR-MPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHH-HSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHH-cCCCCCHHHHHHHHHhhC
Confidence            689999999999999999997779999654 78 999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.31  E-value=1.9e-12  Score=90.95  Aligned_cols=44  Identities=25%  Similarity=0.592  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCc-chhhhccCC-CCCHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFGNK-WARIATYLP-GRTDNDVKNFWSSRQ  109 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G~k-Ws~IAk~Lp-gRT~nq~KnRw~~l~  109 (302)
                      .||.+||++|++++.+||.+ |..||..|+ +||..||++||+.++
T Consensus         3 ~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    3 PWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            79999999999999999988 999999999 999999999998763

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.22  E-value=7.4e-12  Score=127.61  Aligned_cols=102  Identities=27%  Similarity=0.499  Sum_probs=90.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCC--CCCCCCCCHHHHHHHHHHHH------
Q 038795            9 RKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN--LKNGCKFSLEEERIVIELQA------   80 (302)
Q Consensus         9 rKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~--lk~~~~WT~EED~lLlelv~------   80 (302)
                      .+|.||+||++.|..+|.++| ..|..|+ + +.||.+..||+||.++....  .+++ .||.+|++.|+++|.      
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig-~-~lgr~P~~crd~wr~~~~~g~~~~r~-~Ws~eEe~~Llk~V~~~~~~~  458 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIG-K-ALGRMPMDCRDRWRQYVKCGSKRNRG-AWSIEEEEKLLKTVNEMIREA  458 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHH-H-HHccCcHHHHHHHHHhhccccccccC-cchHHHHHHHHHHHHHHHHHh
Confidence            799999999999999999999 7899994 4 58999999999999999887  4777 899999999999995      


Q ss_pred             -Hh-------------------CCcchhhhccCCCCCHHHHHHHHHHHHHHHHH
Q 038795           81 -QF-------------------GNKWARIATYLPGRTDNDVKNFWSSRQKRLAR  114 (302)
Q Consensus        81 -~~-------------------G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r  114 (302)
                       ++                   +-.|..|++.+..|+..||+-+|..++.+-..
T Consensus       459 ~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~  512 (607)
T KOG0051|consen  459 LQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSF  512 (607)
T ss_pred             hcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHh
Confidence             33                   12699999999999999999999998876543

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.16  E-value=2.4e-11  Score=88.54  Aligned_cols=43  Identities=33%  Similarity=0.719  Sum_probs=37.7

Q ss_pred             CCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHH
Q 038795           67 FSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQ  109 (302)
Q Consensus        67 WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~  109 (302)
                      ||.+||.+|+++|.+||++|..||++|+.||..+|++||+..+
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l   43 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHL   43 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHC
Confidence            9999999999999999999999999996699999999998844

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.16  E-value=4.2e-11  Score=81.52  Aligned_cols=45  Identities=38%  Similarity=0.809  Sum_probs=42.9

Q ss_pred             CCCHHHHHHHHHHHHHhC-CcchhhhccCCCCCHHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFG-NKWARIATYLPGRTDNDVKNFWSSRQK  110 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G-~kWs~IAk~LpgRT~nq~KnRw~~l~k  110 (302)
                      .||++||.+|+.++.+|| ++|..||..|++||+.+|++||+.+++
T Consensus         3 ~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        3 EWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            799999999999999999 999999999999999999999988753

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.07  E-value=2e-10  Score=77.14  Aligned_cols=43  Identities=33%  Similarity=0.759  Sum_probs=41.1

Q ss_pred             CCCHHHHHHHHHHHHHhC-CcchhhhccCCCCCHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFG-NKWARIATYLPGRTDNDVKNFWSSR  108 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G-~kWs~IAk~LpgRT~nq~KnRw~~l  108 (302)
                      .||.+|+.+|++++.+|| ++|..||+.+++||..+|++||+.+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            499999999999999999 9999999999999999999999875

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PLN03212 Transcription repressor MYB5; Provisional

Probab=98.98  E-value=5.2e-10  Score=103.53  Aligned_cols=63  Identities=17%  Similarity=0.414  Sum_probs=54.2

Q ss_pred             ccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhC-CcchhhhccC-CCCCHHHHHHHHHHHHH
Q 038795           40 GLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFG-NKWARIATYL-PGRTDNDVKNFWSSRQK  110 (302)
Q Consensus        40 ~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G-~kWs~IAk~L-pgRT~nq~KnRw~~l~k  110 (302)
                      -+++|+...|-.       +.++++ +||+|||++|+++|++|| ++|..||+.+ ++||+.||+.||..+++
T Consensus         9 ~~~~~~~pcc~K-------~glKRg-~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~   73 (249)
T PLN03212          9 PVSKKTTPCCTK-------MGMKRG-PWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLR   73 (249)
T ss_pred             CCCCCCCCCccc-------CCCcCC-CCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhc
Confidence            467777776643       467788 899999999999999999 6899999988 69999999999997764

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.98  E-value=2.1e-10  Score=78.09  Aligned_cols=48  Identities=52%  Similarity=0.968  Sum_probs=43.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccC
Q 038795           10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR   58 (302)
Q Consensus        10 KG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~   58 (302)
                      ++.||++||.+|+.++..||..+|..|+. .+++|++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~-~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAK-ELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCHHHHHHHHHHHcC
Confidence            47899999999999999999888999955 5899999999999988764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.81  E-value=1.7e-09  Score=72.49  Aligned_cols=45  Identities=53%  Similarity=1.000  Sum_probs=40.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccccCCCCcccccccccccc
Q 038795           12 PWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKL   57 (302)
Q Consensus        12 ~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L   57 (302)
                      +||.|||+.|+.++..||..+|..|+. .+++|++.+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~-~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAK-ELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHh-HcCCCCHHHHHHHHHHhC
Confidence            599999999999999999888999954 589999999999997653

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PLN03091 hypothetical protein; Provisional

Probab=98.80  E-value=4.1e-09  Score=104.25  Aligned_cols=50  Identities=18%  Similarity=0.438  Sum_probs=44.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhC-CcchhhhccC-CCCCHHHHHHHHHHH
Q 038795           58 RPNLKNGCKFSLEEERIVIELQAQFG-NKWARIATYL-PGRTDNDVKNFWSSR  108 (302)
Q Consensus        58 ~p~lk~~~~WT~EED~lLlelv~~~G-~kWs~IAk~L-pgRT~nq~KnRw~~l  108 (302)
                      +..++++ .||.|||++|+++|.+|| ++|..||+.+ +||++.|||.||..+
T Consensus         9 KqklrKg-~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~Ny   60 (459)
T PLN03091          9 KQKLRKG-LWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY   60 (459)
T ss_pred             CCCCcCC-CCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhc
Confidence            3567788 899999999999999999 5799999988 599999999999843

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.77  E-value=8.5e-09  Score=105.51  Aligned_cols=98  Identities=34%  Similarity=0.490  Sum_probs=80.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHh----CC-----------CC--------cccccccccCCCCcccccc---ccccccCCCC
Q 038795            8 IRKGPWKAEEDEVLINHVKKY----GP-----------RD--------WSSIRSKGLLQRTGKSCRL---RWVNKLRPNL   61 (302)
Q Consensus         8 lrKG~WT~EED~~L~~~V~~~----G~-----------~n--------W~~Ias~~l~~Rt~~qCR~---Rw~~~L~p~l   61 (302)
                      ++-+.|+.+||..|-+.|..|    |.           .+        |..| ...+|.|+..++..   |-.+.+.+  
T Consensus       306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~-~~~Lp~R~~~siy~~~rR~y~~FE~--  382 (607)
T KOG0051|consen  306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNL-YKLLPYRDRKSIYHHLRRAYTPFEN--  382 (607)
T ss_pred             hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhh-hhhcCcccchhHHHHHHhcCCcccc--
Confidence            445789999999999999887    11           11        4566 55688899998877   33344444  


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHH
Q 038795           62 KNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQK  110 (302)
Q Consensus        62 k~~~~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~k  110 (302)
                      ++| .||++|++.|..+|.++|+.|..|++.| ||.+.+|+.||..+++
T Consensus       383 ~rg-~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~  429 (607)
T KOG0051|consen  383 KRG-KWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVK  429 (607)
T ss_pred             ccC-CCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhc
Confidence            678 8999999999999999999999999999 9999999999988765

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=98.75  E-value=7.1e-09  Score=95.66  Aligned_cols=50  Identities=18%  Similarity=0.323  Sum_probs=44.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CcchhhhccCC-CCCHHHHHHHHHHHHH
Q 038795           60 NLKNGCKFSLEEERIVIELQAQFG-NKWARIATYLP-GRTDNDVKNFWSSRQK  110 (302)
Q Consensus        60 ~lk~~~~WT~EED~lLlelv~~~G-~kWs~IAk~Lp-gRT~nq~KnRw~~l~k  110 (302)
                      .+.+| +||.|||.+|+++|++|| ++|..||+.++ +|++.+||-||.++++
T Consensus         6 ~~~kG-pWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLr   57 (238)
T KOG0048|consen    6 ELVKG-PWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLR   57 (238)
T ss_pred             cccCC-CCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccC
Confidence            34478 999999999999999999 67999999998 9999999999986654

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.01  E-value=4.7e-07  Score=91.85  Aligned_cols=96  Identities=28%  Similarity=0.573  Sum_probs=82.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCC--CCCCCCCCCHHHHHHHHHHHHHhC---
Q 038795            9 RKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP--NLKNGCKFSLEEERIVIELQAQFG---   83 (302)
Q Consensus         9 rKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p--~lk~~~~WT~EED~lLlelv~~~G---   83 (302)
                      .+|.||.||+..|...+..+| ..|..| .+ ..+|-...||+||.+|...  .++++ +|+.+|+.+|...+...-   
T Consensus       290 ~~~~wt~e~~~eL~~~~~~~~-~~w~~i-g~-~~~rmp~~crd~wr~~~~~g~t~~~~-~ws~eee~~l~~vv~e~~~~~  365 (512)
T COG5147         290 QRGKWTKEEEQELAKLVVEHG-GSWTEI-GK-LLGRMPNDCRDRWRDYVKCGDTLKRN-RWSIEEEELLDKVVNEMRLEA  365 (512)
T ss_pred             hhccCcccccccccccccccc-chhhHh-hh-hhccCcHHHHHHHhhhccccCccCCC-CCchhhhhhHHHHHHHHHHHH
Confidence            468899999999999999999 679999 45 6899999999999999988  78787 899999999998876321   


Q ss_pred             -----CcchhhhccCCCCCHHHHHHHHHHH
Q 038795           84 -----NKWARIATYLPGRTDNDVKNFWSSR  108 (302)
Q Consensus        84 -----~kWs~IAk~LpgRT~nq~KnRw~~l  108 (302)
                           -.|..|++.+.+|...+|+.++..+
T Consensus       366 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~~  395 (512)
T COG5147         366 QQSSRILWLLIAQNIRNRLQHHCRDKYGVL  395 (512)
T ss_pred             hhhhhhhHHHHHHhhhccccCCCCCccccc
Confidence                 3599999999988888888766543

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.69  E-value=5.6e-05  Score=75.03  Aligned_cols=44  Identities=20%  Similarity=0.496  Sum_probs=41.5

Q ss_pred             CCCHHHHHHHHHHHHHhC-CcchhhhccCCCCCHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFG-NKWARIATYLPGRTDNDVKNFWSSRQ  109 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G-~kWs~IAk~LpgRT~nq~KnRw~~l~  109 (302)
                      .||.+|+.+|++++..|| |+|..||.++..||..+||.+|.++.
T Consensus        74 ~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   74 SWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            699999999999999999 99999999999999999999997653

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.66  E-value=0.0001  Score=54.27  Aligned_cols=44  Identities=14%  Similarity=0.309  Sum_probs=39.1

Q ss_pred             CCCHHHHHHHHHHHHHhCC-cc---hhhhccCC-CC-CHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFGN-KW---ARIATYLP-GR-TDNDVKNFWSSRQ  109 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G~-kW---s~IAk~Lp-gR-T~nq~KnRw~~l~  109 (302)
                      .||+||..++++++..+|. +|   ..|+..+. .| |..||+.+...+.
T Consensus         5 ~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         5 VWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            7999999999999999996 99   99999873 45 9999999987653

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.61  E-value=3.7e-05  Score=56.58  Aligned_cols=48  Identities=17%  Similarity=0.300  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCc---ccccccccCCC-Ccccccccccccc
Q 038795           10 KGPWKAEEDEVLINHVKKYGPRDW---SSIRSKGLLQR-TGKSCRLRWVNKL   57 (302)
Q Consensus        10 KG~WT~EED~~L~~~V~~~G~~nW---~~Ias~~l~~R-t~~qCR~Rw~~~L   57 (302)
                      +-.||+||..+++++|+.+|.++|   ..|+......| |..||+.|++.|.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            456999999999999999997799   99965544456 9999999987764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.25  E-value=0.00011  Score=73.12  Aligned_cols=49  Identities=22%  Similarity=0.615  Sum_probs=44.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCcccccccccccc
Q 038795            8 IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKL   57 (302)
Q Consensus         8 lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L   57 (302)
                      +-.+.||.+|+-+|++++..||-+||..| +.++..|++.+|+++|.+++
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dI-A~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDI-ADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHH-HHHHcccchHHHHHHHHHHH
Confidence            55678999999999999999999999999 56688999999999999865

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.18  E-value=0.00046  Score=60.63  Aligned_cols=49  Identities=16%  Similarity=0.291  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHHHHHh---CC----cchhhhccCCCCCHHHHHHHHHHHHHHHHH
Q 038795           65 CKFSLEEERIVIELQAQF---GN----KWARIATYLPGRTDNDVKNFWSSRQKRLAR  114 (302)
Q Consensus        65 ~~WT~EED~lLlelv~~~---G~----kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r  114 (302)
                      +.||.|||.+|.+.|-.|   |+    -...+++.| +||+.+|.=|||+.+|+.+.
T Consensus         5 DAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~   60 (161)
T TIGR02894         5 DAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYE   60 (161)
T ss_pred             cccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHH
Confidence            479999999999999887   43    378889999 99999999999999997654

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.03  E-value=0.0013  Score=59.85  Aligned_cols=96  Identities=26%  Similarity=0.485  Sum_probs=68.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccccC---CCCccccccccccccC----------------CC----CCCCCCCC
Q 038795           12 PWKAEEDEVLINHVKKYGPRDWSSIRSKGLL---QRTGKSCRLRWVNKLR----------------PN----LKNGCKFS   68 (302)
Q Consensus        12 ~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~---~Rt~~qCR~Rw~~~L~----------------p~----lk~~~~WT   68 (302)
                      .|+++.|-.|+.+|..-.  +-..| .+++.   .-|-..+.+||+..|.                |.    +.....||
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v-~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS   77 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESV-HLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFS   77 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHH-HccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCC
Confidence            499999999999998755  45556 33332   2355667789987663                21    22335899


Q ss_pred             HHHHHHHHHHHHHhCC---cchhhh----ccC-CCCCHHHHHHHHHHHHH
Q 038795           69 LEEERIVIELQAQFGN---KWARIA----TYL-PGRTDNDVKNFWSSRQK  110 (302)
Q Consensus        69 ~EED~lLlelv~~~G~---kWs~IA----k~L-pgRT~nq~KnRw~~l~k  110 (302)
                      .+|+++|.........   .+.+|-    ..| ++||+.++.++|..+.+
T Consensus        78 ~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkq  127 (199)
T PF13325_consen   78 KEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQ  127 (199)
T ss_pred             HHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHH
Confidence            9999999998765542   477772    234 89999999999985544

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=97.01  E-value=0.00054  Score=52.98  Aligned_cols=51  Identities=31%  Similarity=0.573  Sum_probs=37.0

Q ss_pred             CCCHHHHHHHHHHHHH------hC--C------cchhhhccC----CCCCHHHHHHHHHHHHHHHHHHh
Q 038795           66 KFSLEEERIVIELQAQ------FG--N------KWARIATYL----PGRTDNDVKNFWSSRQKRLARIL  116 (302)
Q Consensus        66 ~WT~EED~lLlelv~~------~G--~------kWs~IAk~L----pgRT~nq~KnRw~~l~kr~~r~~  116 (302)
                      .||.+|...||+++..      ++  +      .|..||..|    ..||+.||+++|+++.++..+..
T Consensus         3 ~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k   71 (90)
T PF13837_consen    3 NWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIK   71 (90)
T ss_dssp             SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999876      21  1      399999876    47999999999999877665443

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=96.90  E-value=0.00067  Score=68.86  Aligned_cols=51  Identities=25%  Similarity=0.535  Sum_probs=44.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CcchhhhccCCCCCHHHHHHHHHHHHHHH
Q 038795           61 LKNGCKFSLEEERIVIELQAQFG-NKWARIATYLPGRTDNDVKNFWSSRQKRL  112 (302)
Q Consensus        61 lk~~~~WT~EED~lLlelv~~~G-~kWs~IAk~LpgRT~nq~KnRw~~l~kr~  112 (302)
                      ++-+ .|+.-||++|.-.|.+|| +.|+.|++.|+-.|..||++||...+.-.
T Consensus         5 ~kgg-vwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~   56 (617)
T KOG0050|consen    5 IKGG-VWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPA   56 (617)
T ss_pred             Eecc-eecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHH
Confidence            3445 899999999999999999 67999999999999999999999766433

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.51  E-value=0.003  Score=64.58  Aligned_cols=43  Identities=12%  Similarity=0.342  Sum_probs=41.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSR  108 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l  108 (302)
                      .||.+|.-+|++.+..||-+|.+||.++.+||..||--+|..+
T Consensus       255 ~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  255 NWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            7999999999999999999999999999999999999999765

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.49  E-value=0.0024  Score=64.31  Aligned_cols=43  Identities=16%  Similarity=0.338  Sum_probs=41.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSR  108 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l  108 (302)
                      .||.+|..+|++.++.||..|.+||.++.+||..||--||-++
T Consensus       281 ~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         281 NWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             cccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            7999999999999999999999999999999999999999765

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=96.40  E-value=0.0073  Score=45.90  Aligned_cols=50  Identities=30%  Similarity=0.506  Sum_probs=41.6

Q ss_pred             CCCHHHHHHHHHHHHHhC----C-------------cchhhhccC-----CCCCHHHHHHHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFG----N-------------KWARIATYL-----PGRTDNDVKNFWSSRQKRLARI  115 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G----~-------------kWs~IAk~L-----pgRT~nq~KnRw~~l~kr~~r~  115 (302)
                      .||.+|..+|++++.+|.    +             -|..|+..|     +.||..++|.+|..+....++.
T Consensus         4 ~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk~   75 (78)
T PF13873_consen    4 NFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKKK   75 (78)
T ss_pred             CCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            799999999999998873    1             399998765     3699999999999988766554

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.26  E-value=0.001  Score=50.17  Aligned_cols=52  Identities=27%  Similarity=0.436  Sum_probs=32.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC------C--CcccccccccCCCCccccccccccccCCCC
Q 038795           10 KGPWKAEEDEVLINHVKKYGP------R--DWSSIRSKGLLQRTGKSCRLRWVNKLRPNL   61 (302)
Q Consensus        10 KG~WT~EED~~L~~~V~~~G~------~--nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~l   61 (302)
                      |.+||.|||+.|+..|..+..      +  =|..++...+..+|-.+-|+||...|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            568999999999999976521      1  299987775558899999999999987654

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.09  E-value=0.007  Score=53.82  Aligned_cols=47  Identities=15%  Similarity=0.259  Sum_probs=40.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCc-------chhhhccCCCCCHHHHHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFGNK-------WARIATYLPGRTDNDVKNFWSSRQKRLA  113 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G~k-------Ws~IAk~LpgRT~nq~KnRw~~l~kr~~  113 (302)
                      .||.|+|.+|.+.|..|+..       ...++..| +||..+|.-|||+.+++.+
T Consensus         7 awt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Y   60 (170)
T PRK13923          7 AWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQY   60 (170)
T ss_pred             hhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHH
Confidence            79999999999999888732       56667888 9999999999999988643

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.08  E-value=0.0054  Score=59.34  Aligned_cols=43  Identities=26%  Similarity=0.579  Sum_probs=40.6

Q ss_pred             CCCHHHHHHHHHHHHHhC-CcchhhhccCCCCCHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFG-NKWARIATYLPGRTDNDVKNFWSSR  108 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G-~kWs~IAk~LpgRT~nq~KnRw~~l  108 (302)
                      .|+.+|+.+|++.....| ++|..||.++..|+..+||.+|..+
T Consensus        65 ~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~  108 (432)
T COG5114          65 GWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKM  108 (432)
T ss_pred             CcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHH
Confidence            699999999999999999 9999999999999999999998654

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.07  E-value=0.003  Score=64.62  Aligned_cols=48  Identities=21%  Similarity=0.615  Sum_probs=42.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccc
Q 038795            7 EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNK   56 (302)
Q Consensus         7 ~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~   56 (302)
                      .--++.||.+|+.+|+++|+.|| -+|.+| +.++.+|+..||-.++.+.
T Consensus       250 ~~~~~~WT~qE~lLLLE~ie~y~-ddW~kV-a~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  250 ESARPNWTEQETLLLLEAIEMYG-DDWNKV-ADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             ccCCCCccHHHHHHHHHHHHHhc-ccHHHH-HhccCCCCHHHHHHHHHhc
Confidence            34577899999999999999999 789999 5679999999999997653

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=95.99  E-value=0.0028  Score=63.83  Aligned_cols=46  Identities=24%  Similarity=0.624  Sum_probs=41.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccc
Q 038795            9 RKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNK   56 (302)
Q Consensus         9 rKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~   56 (302)
                      +...||.+|..+|+++|+.|| -+|.+| +.++.+|+..||-.|+.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kV-A~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG-DDWDKV-ARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh-hhHHHH-HHHhCCCCHHHHHHHHHcC
Confidence            566899999999999999999 689999 5679999999999998863

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=95.12  E-value=0.028  Score=42.38  Aligned_cols=46  Identities=15%  Similarity=0.316  Sum_probs=31.5

Q ss_pred             CCCHHHHHHHHHHHHHhC--------Cc-chhhhccCC-CCCHHHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFG--------NK-WARIATYLP-GRTDNDVKNFWSSRQKR  111 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G--------~k-Ws~IAk~Lp-gRT~nq~KnRw~~l~kr  111 (302)
                      +||.+||.+|++.|.++.        |+ |..++..-+ .+|-...|+||...++.
T Consensus         4 ~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~   59 (65)
T PF08914_consen    4 PFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRG   59 (65)
T ss_dssp             ---HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT--
T ss_pred             CCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence            799999999999996652        22 999997766 99999999999766543

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=95.05  E-value=0.051  Score=60.17  Aligned_cols=101  Identities=18%  Similarity=0.395  Sum_probs=77.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCcccccccccCCCCcccccc-------ccccc------c----------------------
Q 038795           13 WKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRL-------RWVNK------L----------------------   57 (302)
Q Consensus        13 WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~-------Rw~~~------L----------------------   57 (302)
                      ||.-+=..++.+..+||..+...||.. +.+++...++.       ||...      +                      
T Consensus       827 w~~~~f~~f~~~~~~~gr~~~~~i~~~-~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~~  905 (1033)
T PLN03142        827 WSRRDFNAFIRACEKYGRNDIKSIASE-MEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIGK  905 (1033)
T ss_pred             ccHHHHHHHHHHHHHhCHhHHHHHHHH-hcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999998888899654 77888777763       22210      0                      


Q ss_pred             ---------------CCCCCCCCCCCHHHHHHHHHHHHHhC-Ccchhhhc------------cCCCCCHHHHHHHHHHHH
Q 038795           58 ---------------RPNLKNGCKFSLEEERIVIELQAQFG-NKWARIAT------------YLPGRTDNDVKNFWSSRQ  109 (302)
Q Consensus        58 ---------------~p~lk~~~~WT~EED~lLlelv~~~G-~kWs~IAk------------~LpgRT~nq~KnRw~~l~  109 (302)
                                     .++ +++..+|++||+-|+-++.+|| ++|..|-.            +|..||+..|..|.++++
T Consensus       906 k~~~~~~p~~~l~~~~~~-~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~  984 (1033)
T PLN03142        906 KLDRYKNPWLELKIQYGQ-NKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI  984 (1033)
T ss_pred             HHHHccCcHHHceeecCC-CCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence                           022 2334799999999999999999 78999832            347899999999999999


Q ss_pred             HHHHHH
Q 038795          110 KRLARI  115 (302)
Q Consensus       110 kr~~r~  115 (302)
                      +-+.+.
T Consensus       985 ~~~~~e  990 (1033)
T PLN03142        985 RLIEKE  990 (1033)
T ss_pred             HHHHHH
Confidence            877554

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=94.47  E-value=0.011  Score=52.12  Aligned_cols=50  Identities=30%  Similarity=0.626  Sum_probs=39.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHh---CC---CCcccccccccCCCCccccccccccccCC
Q 038795            8 IRKGPWKAEEDEVLINHVKKY---GP---RDWSSIRSKGLLQRTGKSCRLRWVNKLRP   59 (302)
Q Consensus         8 lrKG~WT~EED~~L~~~V~~~---G~---~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p   59 (302)
                      .|...||.|||.+|-+.|-+|   |.   ....+++.+  .+||+.-|.-||+.+++.
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~--L~RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRA--LNRTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHH--HcccHHHhcchHHHHHHH
Confidence            467789999999999999988   31   135666444  799999999999998863

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=94.23  E-value=0.01  Score=45.74  Aligned_cols=47  Identities=30%  Similarity=0.557  Sum_probs=31.1

Q ss_pred             CCCCHHHHHHHHHHHHH--h----C--CC-----Cccccccc---ccCCCCcccccccccccc
Q 038795           11 GPWKAEEDEVLINHVKK--Y----G--PR-----DWSSIRSK---GLLQRTGKSCRLRWVNKL   57 (302)
Q Consensus        11 G~WT~EED~~L~~~V~~--~----G--~~-----nW~~Ias~---~l~~Rt~~qCR~Rw~~~L   57 (302)
                      -.||.+|...|++++..  +    +  ..     -|..||..   .+..|++.||+.+|.+..
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            46999999999999987  2    1  11     39999644   245899999999998754

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.12  E-value=0.034  Score=42.19  Aligned_cols=49  Identities=31%  Similarity=0.529  Sum_probs=37.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHh-----CC-----------CCccccccc----ccCCCCcccccccccccc
Q 038795            9 RKGPWKAEEDEVLINHVKKY-----GP-----------RDWSSIRSK----GLLQRTGKSCRLRWVNKL   57 (302)
Q Consensus         9 rKG~WT~EED~~L~~~V~~~-----G~-----------~nW~~Ias~----~l~~Rt~~qCR~Rw~~~L   57 (302)
                      |+..||.+|.+.|+++|.+|     |.           .-|..|+..    ....|+..+++.+|.+..
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            46679999999999999988     21           129998533    234799999999998764

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=93.92  E-value=0.15  Score=49.29  Aligned_cols=55  Identities=20%  Similarity=0.325  Sum_probs=43.9

Q ss_pred             CCCCHHHHHHHHHHHHHh----------CCcchhhhccC----CCCCHHHHHHHHHHHHHHHHHHhccC
Q 038795           65 CKFSLEEERIVIELQAQF----------GNKWARIATYL----PGRTDNDVKNFWSSRQKRLARILQNS  119 (302)
Q Consensus        65 ~~WT~EED~lLlelv~~~----------G~kWs~IAk~L----pgRT~nq~KnRw~~l~kr~~r~~~~s  119 (302)
                      ..|+.+|-..||++..+.          +..|..||..+    .-||+.+||++|.++.++.++.+...
T Consensus        55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~  123 (345)
T KOG4282|consen   55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKK  123 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence            479999999999987543          23499999743    56999999999999988877765443

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=93.08  E-value=0.24  Score=38.60  Aligned_cols=48  Identities=27%  Similarity=0.495  Sum_probs=36.6

Q ss_pred             CCCHHHHHHHHHHHHHh---CC----------cchhhhccC-----CCCCHHHHHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQF---GN----------KWARIATYL-----PGRTDNDVKNFWSSRQKRLA  113 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~---G~----------kWs~IAk~L-----pgRT~nq~KnRw~~l~kr~~  113 (302)
                      .||.++++.|++++.+.   |+          .|..|+..|     -..|..||+|||..+.+...
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~   66 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYR   66 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHH
Confidence            49999999999997554   22          288898765     33578999999998877543

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=92.86  E-value=0.17  Score=42.53  Aligned_cols=50  Identities=20%  Similarity=0.470  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----cchhhhc------------cCCCCCHHHHHHHHHHHHHHHHH
Q 038795           65 CKFSLEEERIVIELQAQFGN----KWARIAT------------YLPGRTDNDVKNFWSSRQKRLAR  114 (302)
Q Consensus        65 ~~WT~EED~lLlelv~~~G~----kWs~IAk------------~LpgRT~nq~KnRw~~l~kr~~r  114 (302)
                      ..||++||.-|+-++.+||-    .|..|-.            +|..||+.+|..|.+++++-+.+
T Consensus        50 k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~K  115 (118)
T PF09111_consen   50 KVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIEK  115 (118)
T ss_dssp             SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHHC
T ss_pred             CCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHHH
Confidence            37999999999999999995    7988843            34679999999999999987643

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=92.69  E-value=0.17  Score=50.38  Aligned_cols=52  Identities=25%  Similarity=0.295  Sum_probs=45.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCcchhhhcc-----CCC-CCHHHHHHHHHHHHHHHHHHh
Q 038795           65 CKFSLEEERIVIELQAQFGNKWARIATY-----LPG-RTDNDVKNFWSSRQKRLARIL  116 (302)
Q Consensus        65 ~~WT~EED~lLlelv~~~G~kWs~IAk~-----Lpg-RT~nq~KnRw~~l~kr~~r~~  116 (302)
                      ..||.+|-.-|.+|.+.|.=+|..||..     ++. ||-.++|.||....+++.+..
T Consensus       131 n~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr  188 (445)
T KOG2656|consen  131 NSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKAR  188 (445)
T ss_pred             ccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHcc
Confidence            3699999999999999999999999965     655 999999999999888876644

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=92.01  E-value=0.043  Score=53.29  Aligned_cols=47  Identities=19%  Similarity=0.432  Sum_probs=42.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccC
Q 038795           11 GPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR   58 (302)
Q Consensus        11 G~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~   58 (302)
                      --|+..|+.+|+++....|-+||..|| ..+..|+...|+++|..++.
T Consensus        64 e~WgadEEllli~~~~TlGlGNW~dIa-dyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          64 EGWGADEELLLIECLDTLGLGNWEDIA-DYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCcCchHHHHHHHHHHhcCCCcHHHHH-HHHhhhhhHHHHHHHHHHHh
Confidence            459999999999999999999999995 45779999999999988764

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=91.89  E-value=0.36  Score=48.90  Aligned_cols=49  Identities=18%  Similarity=0.310  Sum_probs=44.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLAR  114 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r  114 (302)
                      .||.||--++-+....||++..+|-+.||.|+-..+..+|....|...+
T Consensus       189 ~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~~  237 (534)
T KOG1194|consen  189 EWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTREY  237 (534)
T ss_pred             cchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhhH
Confidence            6999999999999999999999999999999999999998877665433

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=90.12  E-value=0.078  Score=47.22  Aligned_cols=50  Identities=26%  Similarity=0.537  Sum_probs=37.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccc-----ccccCCCCccccccccccccC
Q 038795            8 IRKGPWKAEEDEVLINHVKKYGPRDWSSIR-----SKGLLQRTGKSCRLRWVNKLR   58 (302)
Q Consensus         8 lrKG~WT~EED~~L~~~V~~~G~~nW~~Ia-----s~~l~~Rt~~qCR~Rw~~~L~   58 (302)
                      .|...||.|||.+|-+.|-.|+...=..++     .. ..+|+...|..||..+++
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~-~L~rt~aac~fRwNs~vr   57 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGD-ALKRTAAACGFRWNSVVR   57 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHH-HHhhhHHHHHhHHHHHHH
Confidence            567889999999999999988643322331     12 468999999999976665

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=87.84  E-value=1.1  Score=31.21  Aligned_cols=42  Identities=29%  Similarity=0.355  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHH
Q 038795           69 LEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR  111 (302)
Q Consensus        69 ~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr  111 (302)
                      ++++..++.++-..|-.|.+||..+ |.|.+.|+.+....+++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~   53 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK   53 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence            4667788888888899999999999 99999999988766554

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=86.99  E-value=0.93  Score=45.18  Aligned_cols=45  Identities=16%  Similarity=0.337  Sum_probs=41.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHH
Q 038795           65 CKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQ  109 (302)
Q Consensus        65 ~~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~  109 (302)
                      .+||..|-++.+.+...+|..++.|+..+|.|...|||-+|..--
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Ee  410 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEE  410 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHh
Confidence            489999999999999999999999999999999999999996543

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=86.39  E-value=0.46  Score=47.27  Aligned_cols=51  Identities=24%  Similarity=0.413  Sum_probs=42.6

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccc
Q 038795            2 EGKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNK   56 (302)
Q Consensus         2 ~~kK~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~   56 (302)
                      +|++.+--  +||.+|-++...+....| -+...| +.++|+|+.+|++..|.+-
T Consensus       359 ~g~~~~~~--~Ws~~e~ekFYKALs~wG-tdF~LI-s~lfP~R~RkqIKaKfi~E  409 (507)
T COG5118         359 FGKKKGAL--RWSKKEIEKFYKALSIWG-TDFSLI-SSLFPNRERKQIKAKFIKE  409 (507)
T ss_pred             ccCCCCCC--cccHHHHHHHHHHHHHhc-chHHHH-HHhcCchhHHHHHHHHHHH
Confidence            45555443  499999999999999999 679999 4569999999999998763

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=80.55  E-value=1.3  Score=37.14  Aligned_cols=31  Identities=32%  Similarity=0.624  Sum_probs=25.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC---CCccccc
Q 038795            7 EIRKGPWKAEEDEVLINHVKKYGP---RDWSSIR   37 (302)
Q Consensus         7 ~lrKG~WT~EED~~L~~~V~~~G~---~nW~~Ia   37 (302)
                      .-++..||.+||..|+-++.+||-   +.|..|.
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik   79 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIK   79 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHH
Confidence            456778999999999999999998   7899984

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	302
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		2e-24
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		2e-22
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		2e-22
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		3e-22
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		4e-22
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		4e-13
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		2e-10
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		7e-10
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		7e-09
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		1e-08
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		2e-08
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		7e-08
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		1e-07

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/105 (51%), Positives = 70/105 (66%), Gaps = 2/105 (1%)
Query: 7   EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCK 66
           E+ KGPW  EED+ +I HV+KYGP+ WS I +K L  R GK CR RW N L P +K    
Sbjct: 24  ELNKGPWTKEEDQRVIEHVQKYGPKRWSDI-AKHLKGRIGKQCRERWHNHLNPEVKK-TS 81
Query: 67  FSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR 111
           ++ EE+RI+ +   + GN+WA IA  LPGRTDN VKN W+S  +R
Sbjct: 82  WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRR 126

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
Query: 7   EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCK 66
           E+ KGPW  EED+ +I  V+KYGP+ WS I +K L  R GK CR RW N L P +K    
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNPEVKK-TS 112
Query: 67  FSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR 111
           ++ EE+RI+ +   + GN+WA IA  LPGRTDN +KN W+S  +R
Sbjct: 113 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 157

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
Query: 7   EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCK 66
           E+ KGPW  EED+ +I  V+KYGP+ WS I +K L  R GK CR RW N L P +K    
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNPEVKK-TS 58
Query: 67  FSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR 111
           ++ EE+RI+ +   + GN+WA IA  LPGRTDN +KN W+S  +R
Sbjct: 59  WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 103

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/102 (50%), Positives = 67/102 (65%), Gaps = 2/102 (1%)
Query: 10  KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSL 69
           KGPW  EED+ +I  V+KYGP+ WS I +K L  R GK CR RW N L P +K    ++ 
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNPEVKK-TSWTE 61
Query: 70  EEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR 111
           EE+RI+ +   + GN+WA IA  LPGRTDN +KN W+S  +R
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 103

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 7   EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCK 66
           ++ KGPW  EED+ +I  VKKYG + W+ I +K L  R GK CR RW N L P +K    
Sbjct: 4   DLVKGPWTKEEDQKVIELVKKYGTKQWTLI-AKHLKGRLGKQCRERWHNHLNPEVKKSS- 61
Query: 67  FSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR 111
           ++ EE+RI+ E     GN+WA IA  LPGRTDN VKN W+S  KR
Sbjct: 62  WTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKR 106

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 3/105 (2%)
Query: 10  KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSL 69
           KGP+   ED+++  +VK+ GP++W  I S  L  R+ K CR RW N L P +     ++ 
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITS-FLPNRSPKQCRERWFNHLDPAVVKHA-WTP 59
Query: 70  EEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFW-SSRQKRLA 113
           EE+  +     + G+KW+ IA  +PGRTDN +KN W SS  KR++
Sbjct: 60  EEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRIS 104

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 16  EEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIV 75
           EEDE+L   V ++G  DW  I +     R  + CR RW N L P++ +   ++ EE+ ++
Sbjct: 17  EEDEMLKRAVAQHGS-DWKMI-AATFPNRNARQCRDRWKNYLAPSISH-TPWTAEEDALL 73
Query: 76  IELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLA 113
           ++   ++G +WA IA + PGRTD  +KN W +   +L 
Sbjct: 74  VQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLG 111

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 16  EEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIV 75
           EED  L   V +YG +DW  I S+ ++ R  + CR RW N + P L+    +S EE+ ++
Sbjct: 7   EEDLKLQQLVMRYGAKDWIRI-SQLMITRNPRQCRERWNNYINPALRTD-PWSPEEDMLL 64
Query: 76  IELQAQFGNKWARIATYLPGRTDNDVKNFW 105
            +  A++G KW +I+ +L  R+DN+++N W
Sbjct: 65  DQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/50 (58%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP 59
          KGPW  EED+ LI  V+KYGP+ WS I +K L  R GK CR RW N L P
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNP 51

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP 59
          KGPW  EED+ +I  V+KYGP+ WS I +K L  R GK CR RW N L P
Sbjct: 3  KGPWTKEEDQRVIKLVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNP 51

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP 59
          KGPW  EED+ +I  V+KYGP+ WS I +K L  R GK CR RW N L P
Sbjct: 3  KGPWTKEEDQRVIELVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNP 51

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 70  EEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR 111
           EE+RI+ +   + GN+WA IA  LPGRTDN +KN W+S  +R
Sbjct: 9   EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 50

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 70  EEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR 111
           EE+RI+ +   + GN+WA IA  LPGRTDN +KN W+S  +R
Sbjct: 11  EEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	5e-55
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	1e-54
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	5e-53
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	7e-51
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	1e-50
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	5e-49
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	9e-30
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	4e-10
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	2e-24
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-24
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	7e-21
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	1e-18
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	7e-12
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-10
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	8e-10
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	1e-09
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	1e-09
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	3e-09
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	2e-08
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	1e-07
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	2e-07
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	3e-06
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	7e-06
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	1e-04
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	1e-04
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	2e-04
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	3e-04
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	6e-04
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	9e-04

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  173 bits (440), Expect = 5e-55
 Identities = 52/105 (49%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 7   EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCK 66
           E+ KGPW  EED+ +I  V+KYGP+ WS I +K L  R GK CR RW N L P +K    
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNPEVKKT-S 58

Query: 67  FSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR 111
           ++ EE+RI+ +   + GN+WA IA  LPGRTDN +KN W+S  +R
Sbjct: 59  WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 103

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  173 bits (440), Expect = 1e-54
 Identities = 54/107 (50%), Positives = 70/107 (65%), Gaps = 2/107 (1%)

Query: 5   REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNG 64
             E+ KGPW  EED+ +I HV+KYGP+ WS I +K L  R GK CR RW N L P +K  
Sbjct: 22  NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDI-AKHLKGRIGKQCRERWHNHLNPEVKKT 80

Query: 65  CKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR 111
             ++ EE+RI+ +   + GN+WA IA  LPGRTDN VKN W+S  +R
Sbjct: 81  -SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRR 126

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  169 bits (429), Expect = 5e-53
 Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 4/125 (3%)

Query: 10  KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSL 69
           KGP+   ED+++  +VK+ GP++W  I +  L  R+ K CR RW N L P +     ++ 
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRI-TSFLPNRSPKQCRERWFNHLDPAVVKH-AWTP 59

Query: 70  EEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQNSATTSSSNSKS 129
           EE+  +     + G+KW+ IA  +PGRTDN +KN W+S   +  RI  NS          
Sbjct: 60  EEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISK--RISTNSNHKEILLPDR 117

Query: 130 YKTKR 134
            K ++
Sbjct: 118 SKKRK 122

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  162 bits (412), Expect = 7e-51
 Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 2/109 (1%)

Query: 10  KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSL 69
           K  +  EED  L   V +YG +DW  I S+ ++ R  + CR RW N + P L+    +S 
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRI-SQLMITRNPRQCRERWNNYINPALRTD-PWSP 58

Query: 70  EEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQN 118
           EE+ ++ +  A++G KW +I+ +L  R+DN+++N W    +  A+  ++
Sbjct: 59  EEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQKS 107

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  162 bits (412), Expect = 1e-50
 Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 3/110 (2%)

Query: 5   REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNG 64
            +  +K  +  EEDE+L   V ++G  DW  I +     R  + CR RW N L P++ + 
Sbjct: 6   LKAAKKQKFTPEEDEMLKRAVAQHG-SDWKMI-AATFPNRNARQCRDRWKNYLAPSISHT 63

Query: 65  CKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLAR 114
             ++ EE+ ++++   ++G +WA IA + PGRTD  +KN W +   +L  
Sbjct: 64  -PWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGI 112

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  159 bits (405), Expect = 5e-49
 Identities = 52/105 (49%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 7   EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCK 66
           E+ KGPW  EED+ +I  V+KYGP+ WS I +K L  R GK CR RW N L P +K    
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNPEVKKT-S 112

Query: 67  FSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR 111
           ++ EE+RI+ +   + GN+WA IA  LPGRTDN +KN W+S  +R
Sbjct: 113 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 157

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  109 bits (275), Expect = 9e-30
 Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 8  IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKF 67
          + K  W  EEDE L   V++ G  DW  I +  L  RT   C+ RW   L P L  G  +
Sbjct: 4  LGKTRWTREEDEKLKKLVEQNGTDDWKVI-ANYLPNRTDVQCQHRWQKVLNPELIKG-PW 61

Query: 68 SLEEERIVIELQAQFGNK-WARIATYLPGRTD 98
          + EE++ VI+L  ++G K W+ IA +L GR  
Sbjct: 62 TKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIG 93

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 56.5 bits (137), Expect = 4e-10
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 7   EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNL 61
           E++K  W  EED ++    K+ G R W+ I +K L  RT  + +  W + +R  +
Sbjct: 107 EVKKTSWTEEEDRIIYQAHKRLGNR-WAEI-AKLLPGRTDNAIKNHWNSTMRRKV 159

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 92.2 bits (230), Expect = 2e-24
 Identities = 29/52 (55%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 8  IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP 59
          + KGPW  EED+ LI  V+KYGP+ WS I +K L  R GK CR RW N L P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNP 51

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 92.3 bits (230), Expect = 3e-24
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 8  IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKF 67
           + G W+  EDE+L   V KYG   WS I +  L +++ K C+ RW   L P++K   ++
Sbjct: 7  GKGGVWRNTEDEILKAAVMKYGKNQWSRI-ASLLHRKSAKQCKARWYEWLDPSIKKT-EW 64

Query: 68 SLEEE 72
          S    
Sbjct: 65 SGPSS 69

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 83.0 bits (206), Expect = 7e-21
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 8  IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP 59
          + K  W  EEDE L   V++ G  DW  I +  L  RT   C+ RW   L P
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVI-ANYLPNRTDVQCQHRWQKVLNP 51

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 76.9 bits (190), Expect = 1e-18
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 3  GKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLK 62
          G      K  W  EEDE L   V+++G +DW  + +     RT + C+ RW+  L     
Sbjct: 1  GSSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFL-ASHFPNRTDQQCQYRWLRVLSGPSS 59

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 58.5 bits (142), Expect = 7e-12
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 9  RKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQ-RTGKSCRLRWVNKLR 58
          ++  W  EED+ L + V+KYG  +WS I        RT    + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 54.4 bits (131), Expect = 3e-10
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 8  IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLK 62
           +K  W  EE+E L++  K   P  W +I    ++ RT   C   +   L    +
Sbjct: 7  GKKTEWSREEEEKLLHLAKLM-PTQWRTIAP--IIGRTAAQCLEHYEFLLDKAAQ 58

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 53.3 bits (128), Expect = 8e-10
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 4  KREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQ-RTGKSCRLRWVNKLRPNL 61
          K    ++  W  EED+ L + V+KYG  +WS I        RT    + RW    +  L
Sbjct: 4  KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 9  RKGPWKAEEDEVLINHVKKYGPRDWSSIRSK-GLLQRTGKSCRLRWVNKLRPNL 61
          +K  W  EE E +   V+KYG  +W++I      + RT    + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 52.4 bits (126), Expect = 1e-09
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 2  EGKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSK-GLLQRTGKSCRLRWVNKLRPN 60
          +      +K  W  EE E +   V+KYG  +W++I      + RT    + RW    R  
Sbjct: 3  DSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62

Query: 61 L 61
          +
Sbjct: 63 M 63

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 52.8 bits (126), Expect = 3e-09
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 9/98 (9%)

Query: 1   MEGKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKG---LLQRTGKSCRLRWVNKL 57
           +E  +  IR+ P+   E E L+  V+K G   W  ++         RT    + +W   +
Sbjct: 5   LEDPQRRIRR-PFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLV 63

Query: 58  R-----PNLKNGCKFSLEEERIVIELQAQFGNKWARIA 90
                 P  + G     E    V+     +  +  +  
Sbjct: 64  HTAKISPQQRRGEPVPQELLNRVLNAHGYWTQQQMQQL 101

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 50.9 bits (121), Expect = 2e-08
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 8/88 (9%)

Query: 9   RKGPWKAEEDEVLINHVKKYGPRDWSSIRSKG---LLQRTGKSCRLRWVNKLR-----PN 60
            + P+   E E+L+  V+  G   W  ++ +    +  RT    + +W   +      P 
Sbjct: 30  IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQ 89

Query: 61  LKNGCKFSLEEERIVIELQAQFGNKWAR 88
            + G     E    V+  QA +    + 
Sbjct: 90  QRRGAPVPQELLDRVLAAQAYWSVDSSG 117

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 49.8 bits (118), Expect = 4e-08
 Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 8/88 (9%)

Query: 9   RKGPWKAEEDEVLINHVKKYGPRDWSSIRSKG---LLQRTGKSCRLRWVNKLR-----PN 60
            + P+   E E L+  V+  G   W  ++ +       RT    + +W   +      P 
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 61  LKNGCKFSLEEERIVIELQAQFGNKWAR 88
            + G     +    V+   A +  +  +
Sbjct: 76  QRRGEPVPQDLLDRVLAAHAYWSQQQGK 103

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 1e-07
 Identities = 37/228 (16%), Positives = 66/228 (28%), Gaps = 48/228 (21%)

Query: 49  CRLRWVNKLRPNLKNGCKFSLE-EERIVIELQAQFGNKWARIATYLPGRTDNDVKN---- 103
            RL+   KLR  L       L   + ++I+     G K               V+     
Sbjct: 132 SRLQPYLKLRQALLE-----LRPAKNVLIDGVLGSG-KTWVALDVC---LSYKVQCKMDF 182

Query: 104 --FW--SSRQKRLARILQNSATTSSSNSKSYKTKREFPASPDASTLEAPKFTSSMEEESS 159
             FW           +L+           ++ ++ +  ++              + +   
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 160 SKRQSCLSSNMMGNAELIAMAPLPEMINPKLL-HFGASCE------NNPCTEPVLPIYFP 212
            +   CL         L+    L  + N K    F  SC+          T+ +      
Sbjct: 243 YEN--CL---------LV----LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 213 QISQPQQDLPFSP-ESQELLARLEDPYFFDVFGPVDAPPE-LSGQPFL 258
            IS     +  +P E + LL +     + D   P D P E L+  P  
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLK-----YLDC-RPQDLPREVLTTNPRR 329

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 3  GKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKL 57
          G         W A+E+  L+  V   G  +W  + +  +  +T + C   ++   
Sbjct: 1  GSSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDV-ANQMCTKTKEECEKHYMKYF 54

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 8/82 (9%)

Query: 12 PWKAEEDEVLINHVKKYGPRDWSSIRSKG---LLQRTGKSCRLRWVN-----KLRPNLKN 63
          P+   E E L+  V+  G   W  ++ +       RT    + +W        + P  + 
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 64 GCKFSLEEERIVIELQAQFGNK 85
          G     +    V+   A +  +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 70  EEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR--LARILQNSATTSSSNS 127
           EE     +   + G  W+ IA  +  +T +  KNF+ + +KR  L  ILQ          
Sbjct: 22  EEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLDEILQQHKLKMEKER 81

Query: 128 KSYKTKRE 135
            + + K++
Sbjct: 82  NARRKKKK 89

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 42.2 bits (99), Expect = 7e-06
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRW 53
           G +  EE E L     K+G  DW++I +   L R+  S + R 
Sbjct: 23 VGKYTPEEIEKLKELRIKHG-NDWATIGA--ALGRSASSVKDRC 63

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 66  KFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWS 106
           K++ EE   + EL+ + GN WA I   L GR+ + VK+   
Sbjct: 25  KYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCR 64

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 68  SLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR--LARILQNSATTSSS 125
           + EE+ + ++   ++G  +  I+  +  ++   VKNF+ + ++R  +  +LQ        
Sbjct: 137 TTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGK 196

Query: 126 NSKSYKTKREFPASPDASTLEAPKFTSSMEEESSSKRQSCLSS 168
              +  + ++   SPD S           EE+ +       +S
Sbjct: 197 EETNGPSNQKPVKSPDNSI------KMPEEEDEAPVLDVRYAS 233

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 8  IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 55
               W A+E+ +LI+  +  G  +W+ I       RT + CR  ++ 
Sbjct: 7  GFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLK 54

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 14/68 (20%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 62  KNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQNSAT 121
               K+++EE+ +  +  A+FG +W +I+  +  RT   VK++    ++     ++    
Sbjct: 7   GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYA---RQYFKNKVKCGLD 63

Query: 122 TSSSNSKS 129
             + N K+
Sbjct: 64  KETPNQKT 71

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 39.6 bits (91), Expect = 6e-04
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 9  RKGPWKAEEDEVLINHVKK-----YGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLK 62
           K  +  EEDE +++ V+K          +  I S  +   TG S R R+   L   L+
Sbjct: 7  NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEI-SHYVPNHTGNSIRHRFRVYLSKRLE 64

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 36.4 bits (84), Expect = 9e-04
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 4  KREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 55
           +       W  +E  +L+  ++ Y   DW+ + S+ +  RT   C L ++ 
Sbjct: 12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKV-SEHVGSRTQDECILHFLR 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.98
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.97
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.95
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.8
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.78
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.73
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.71
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.71
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.67
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.66
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.66
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.63
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.63
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.63
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.62
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.56
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.56
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.55
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.55
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.53
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.53
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.52
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.52
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.51
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.51
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.5
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.47
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.21
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.47
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.46
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.45
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.44
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.44
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.44
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.43
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.35
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.34
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.32
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.32
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.28
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.93
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.27
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.27
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.24
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.23
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.22
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.21
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.2
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.19
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.16
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.15
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.1
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.97
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.94
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.91
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.79
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.75
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.69
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.69
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.53
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.52
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.43
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.37
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.22
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.21
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.17
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.14
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.13
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.33
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.06
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.94
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.86
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.76
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.69
2crg_A	70	Metastasis associated protein MTA3; transcription	97.64
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.62
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	97.36
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.28
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.24
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.24
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.97
2crg_A	70	Metastasis associated protein MTA3; transcription	96.94
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.79
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.71
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.17
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	95.92
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	94.78
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	94.14
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	92.2
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	92.1
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	91.19

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=1.2e-33  Score=227.30  Aligned_cols=104  Identities=50%  Similarity=0.966  Sum_probs=97.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCCcc
Q 038795            7 EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNKW   86 (302)
Q Consensus         7 ~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~kW   86 (302)
                      +++||+||+|||++|+++|.+||.++|..|| ..|++|+++||++||.++|+|.++++ +||.|||.+|+++|.+||++|
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l~p~~~~~-~Wt~eEd~~L~~~~~~~G~~W   78 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHLNPEVKKT-SWTEEEDRIIYQAHKRLGNRW   78 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTTCCCCCCC-CCCHHHHHHHHHHHHHHSSCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHh-hhhcCCCHHHHHHHHHhccCCccccc-CCCHHHHHHHHHHHHHhCCCH
Confidence            4789999999999999999999988999995 55999999999999999999999999 999999999999999999999


Q ss_pred             hhhhccCCCCCHHHHHHHHHHHHHHH
Q 038795           87 ARIATYLPGRTDNDVKNFWSSRQKRL  112 (302)
Q Consensus        87 s~IAk~LpgRT~nq~KnRw~~l~kr~  112 (302)
                      +.||++|||||+++|||||+.++++.
T Consensus        79 ~~Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           79 AEIAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999999988753

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=9.2e-34  Score=229.55  Aligned_cols=104  Identities=33%  Similarity=0.661  Sum_probs=98.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhh
Q 038795           10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNKWARI   89 (302)
Q Consensus        10 KG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~kWs~I   89 (302)
                      ||+||+|||++|+++|..||..+|..||. .|++|+++||++||.++|+|.++++ +||.|||.+|+++|.+||++|+.|
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L~p~i~~~-~WT~eEd~~L~~~~~~~G~~W~~I   78 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYINPALRTD-PWSPEEDMLLDQKYAEYGPKWNKI   78 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHH-HTTTSCHHHHHHHHHHHSSSCCTTC-CCCHHHHHHHHHHHHHTCSCHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhh-hcCCCCHHHHHHHHHHHHccccccc-ccCHHHHHHHHHHHHHhCcCHHHH
Confidence            68999999999999999999889999965 5999999999999999999999999 999999999999999999999999


Q ss_pred             hccCCCCCHHHHHHHHHHHHHHHHHH
Q 038795           90 ATYLPGRTDNDVKNFWSSRQKRLARI  115 (302)
Q Consensus        90 Ak~LpgRT~nq~KnRw~~l~kr~~r~  115 (302)
                      |++|+|||+++||+||+.++++..+.
T Consensus        79 a~~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           79 SKFLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence            99999999999999999999887554

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.98  E-value=7.8e-33  Score=230.25  Aligned_cols=106  Identities=33%  Similarity=0.695  Sum_probs=99.9

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhC
Q 038795            4 KREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFG   83 (302)
Q Consensus         4 kK~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G   83 (302)
                      .++..+||+||+|||++|+++|.+||. +|..|| ..+++|+++|||+||.++|+|.++++ +||.|||++|+++|.+||
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia-~~~~~Rt~~qcr~Rw~~~l~p~~~~~-~WT~eEd~~L~~~v~~~G   81 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIA-ATFPNRNARQCRDRWKNYLAPSISHT-PWTAEEDALLVQKIQEYG   81 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHH-HTCTTCCHHHHHHHHHHHTSTTSCCS-CCCHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHHhhhcccccccc-cCCHHHHHHHHHHHHHHC
Confidence            456799999999999999999999996 999995 45999999999999999999999999 899999999999999999


Q ss_pred             CcchhhhccCCCCCHHHHHHHHHHHHHHH
Q 038795           84 NKWARIATYLPGRTDNDVKNFWSSRQKRL  112 (302)
Q Consensus        84 ~kWs~IAk~LpgRT~nq~KnRw~~l~kr~  112 (302)
                      ++|+.||++|+|||+++||+||+.+++++
T Consensus        82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           82 RQWAIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             SCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999988765

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.97  E-value=8.3e-33  Score=231.32  Aligned_cols=101  Identities=38%  Similarity=0.752  Sum_probs=96.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhh
Q 038795           10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNKWARI   89 (302)
Q Consensus        10 KG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~kWs~I   89 (302)
                      ||+||+|||++|+++|..||.++|..|| ..|++|+++||++||.++|+|.++++ +||.|||.+|+++|.+||++|+.|
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~l~p~~~~~-~Wt~eEd~~L~~~~~~~G~~W~~I   79 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRIT-SFLPNRSPKQCRERWFNHLDPAVVKH-AWTPEEDETIFRNYLKLGSKWSVI   79 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGT-TSCTTSCHHHHHHHHHHHTSTTCCCS-CCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHH-HHHCCCCHHHHHHHHhhccCccccCC-CCCHHHHHHHHHHHHHHCcCHHHH
Confidence            7999999999999999999999999995 55999999999999999999999999 899999999999999999999999


Q ss_pred             hccCCCCCHHHHHHHHHHHHHHH
Q 038795           90 ATYLPGRTDNDVKNFWSSRQKRL  112 (302)
Q Consensus        90 Ak~LpgRT~nq~KnRw~~l~kr~  112 (302)
                      |++|+|||+++|||||+.++++.
T Consensus        80 a~~l~gRt~~~~k~rw~~~l~~~  102 (131)
T 3zqc_A           80 AKLIPGRTDNAIKNRWNSSISKR  102 (131)
T ss_dssp             TTTSTTCCHHHHHHHHHHTTGGG
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999988654

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.97  E-value=1.7e-32  Score=228.24  Aligned_cols=106  Identities=50%  Similarity=0.977  Sum_probs=100.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhC
Q 038795            4 KREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFG   83 (302)
Q Consensus         4 kK~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G   83 (302)
                      .++.+++|+||+|||++|+++|.+||.++|..||. .|+||++.||++||.++|+|.++++ +||+|||.+|++++.+||
T Consensus        21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l~p~~~~~-~WT~eEd~~L~~~~~~~G   98 (128)
T 1h8a_C           21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAK-HLKGRIGKQCRERWHNHLNPEVKKT-SWTEEEDRIIYQAHKRLG   98 (128)
T ss_dssp             -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHH-HSSSCCHHHHHHHHHHTTCSSSCCS-CCCHHHHHHHHHHHHHHC
T ss_pred             hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH-HhcCCcHHHHHHHHHHhcccccccc-cCCHHHHHHHHHHHHHHC
Confidence            35789999999999999999999999889999954 5999999999999999999999999 999999999999999999


Q ss_pred             CcchhhhccCCCCCHHHHHHHHHHHHHH
Q 038795           84 NKWARIATYLPGRTDNDVKNFWSSRQKR  111 (302)
Q Consensus        84 ~kWs~IAk~LpgRT~nq~KnRw~~l~kr  111 (302)
                      ++|+.||++|||||+++|||||+.++++
T Consensus        99 ~~W~~Ia~~l~gRt~~~~k~r~~~~~~~  126 (128)
T 1h8a_C           99 NRWAEIAKLLPGRTDNAVKNHWNSTMRR  126 (128)
T ss_dssp             SCHHHHGGGSTTCCHHHHHHHHHTTTTC
T ss_pred             cCHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999999988765

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=2.1e-30  Score=222.73  Aligned_cols=105  Identities=50%  Similarity=0.963  Sum_probs=99.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 038795            5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGN   84 (302)
Q Consensus         5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~   84 (302)
                      .+.+++|+||+|||++|+++|..||..+|..|| ..|++|++.||++||.++|+|.++++ +||++||.+|++++.+||+
T Consensus        53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l~p~~~~~-~WT~eEd~~L~~~~~~~g~  130 (159)
T 1h89_C           53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHLNPEVKKT-SWTEEEDRIIYQAHKRLGN  130 (159)
T ss_dssp             CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHH-HTSTTCCHHHHHHHHHHTTCTTSCCS-CCCHHHHHHHHHHHHHHCS
T ss_pred             CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHH-HHcCCCCHHHHHHHHHHHhCcccccc-CCChHHHHHHHHHHHHHCC
Confidence            467899999999999999999999988899995 56999999999999999999999998 9999999999999999999


Q ss_pred             cchhhhccCCCCCHHHHHHHHHHHHHH
Q 038795           85 KWARIATYLPGRTDNDVKNFWSSRQKR  111 (302)
Q Consensus        85 kWs~IAk~LpgRT~nq~KnRw~~l~kr  111 (302)
                      +|+.||++|||||+++|||||+.++++
T Consensus       131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~  157 (159)
T 1h89_C          131 RWAEIAKLLPGRTDNAIKNHWNSTMRR  157 (159)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHTTTCC
T ss_pred             CHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999998765

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.95  E-value=9.2e-29  Score=212.50  Aligned_cols=101  Identities=35%  Similarity=0.674  Sum_probs=58.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCC-c
Q 038795            7 EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGN-K   85 (302)
Q Consensus         7 ~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~-k   85 (302)
                      +++||+||+|||++|+++|.+||..+|..|| ..+++|+++||++||.++|+|.++++ +||.|||.+|+++|.+||. +
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l~p~~~~~-~Wt~eEd~~L~~~v~~~g~~~   80 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVLNPELIKG-PWTKEEDQRVIKLVQKYGPKR   80 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCS-CCCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHH-HHcCCCCHHHHHHHHHHccCCCcCCC-CCChHHHHHHHHHHHHhCccc
Confidence            4789999999999999999999988999995 45899999999999999999999999 9999999999999999995 7


Q ss_pred             chhhhccCCCCCHHHHHHHHHHHH
Q 038795           86 WARIATYLPGRTDNDVKNFWSSRQ  109 (302)
Q Consensus        86 Ws~IAk~LpgRT~nq~KnRw~~l~  109 (302)
                      |..||++|+|||++||++||+.++
T Consensus        81 W~~Ia~~l~~Rt~~qcr~Rw~~~l  104 (159)
T 1h89_C           81 WSVIAKHLKGRIGKQCRERWHNHL  104 (159)
T ss_dssp             HHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHh
Confidence            999999999999999999998765

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=5.9e-21  Score=143.44  Aligned_cols=66  Identities=35%  Similarity=0.664  Sum_probs=61.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHH
Q 038795            5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEE   72 (302)
Q Consensus         5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED   72 (302)
                      .+.+++|+||+|||++|+++|.+||..+|..||. .|++|+++|||+||.++|+|.++++ +||.|||
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~L~p~i~~~-~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIAS-LLHRKSAKQCKARWYEWLDPSIKKT-EWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHH-HSTTCCHHHHHHHHHHTSCSSSCCC-CSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HhcCCCHHHHHHHHHHHcCCcccCC-CCChHhc
Confidence            3578999999999999999999999889999965 5899999999999999999999999 9999987

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.78  E-value=1.2e-19  Score=150.58  Aligned_cols=72  Identities=31%  Similarity=0.659  Sum_probs=48.5

Q ss_pred             ccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCC-cchhhhccCCCCCHHHHHHHHHHHH
Q 038795           36 IRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGN-KWARIATYLPGRTDNDVKNFWSSRQ  109 (302)
Q Consensus        36 Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~-kWs~IAk~LpgRT~nq~KnRw~~l~  109 (302)
                      || ..|+||++.||+.||.++|+|.++++ +||.|||++|+++|.+||. +|..||.+|+|||+.||++||+.++
T Consensus         1 Ia-~~~~~Rt~~qC~~Rw~~~l~p~~~k~-~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l   73 (128)
T 1h8a_C            1 ME-AVIKNRTDVQCQHRWQKVLNPELNKG-PWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL   73 (128)
T ss_dssp             ----------------------CTTCCCS-CCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred             Cc-cccCCCCHHHHHHHHHHhhCCCCCCC-CCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence            53 45999999999999999999999999 8999999999999999995 7999999999999999999998765

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.73  E-value=1.9e-18  Score=157.45  Aligned_cols=105  Identities=23%  Similarity=0.302  Sum_probs=90.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCC-----cccccccccCCCCccccccccccccCCCCC------------------
Q 038795            6 EEIRKGPWKAEEDEVLINHVKKYGPRD-----WSSIRSKGLLQRTGKSCRLRWVNKLRPNLK------------------   62 (302)
Q Consensus         6 ~~lrKG~WT~EED~~L~~~V~~~G~~n-----W~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk------------------   62 (302)
                      ..++|++||+|||++|+++|+++|.++     |..|| +.|+|||+.|||.||..+|++.+.                  
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IA-k~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn   82 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS-HYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   82 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT-TTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHH-HHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence            468899999999999999999998643     99995 579999999999999999999885                  


Q ss_pred             -----------CCCCCCHHHHHHHHHHHHH-h--------------------------------C---------------
Q 038795           63 -----------NGCKFSLEEERIVIELQAQ-F--------------------------------G---------------   83 (302)
Q Consensus        63 -----------~~~~WT~EED~lLlelv~~-~--------------------------------G---------------   83 (302)
                                 +. .||.+||-.|...+.+ +                                |               
T Consensus        83 ~ikis~lp~siK~-rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           83 LIKTKVLPPSIKR-KFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             BCEESSCCCCSCC-CCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             ceeeeccCccccC-ccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                       55 7999999999998876 1                                1               


Q ss_pred             ----------CcchhhhccCCCCCHHHHHHHHHHHHHHH
Q 038795           84 ----------NKWARIATYLPGRTDNDVKNFWSSRQKRL  112 (302)
Q Consensus        84 ----------~kWs~IAk~LpgRT~nq~KnRw~~l~kr~  112 (302)
                                ..|..||+.+|+||.+++|+||+.++++.
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                      16999999999999999999999888764

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.71  E-value=1.7e-18  Score=143.73  Aligned_cols=84  Identities=17%  Similarity=0.340  Sum_probs=77.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc---cCCCCccccccccccccC-----CCCCCCCCCCHHHHHHHH
Q 038795            5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKG---LLQRTGKSCRLRWVNKLR-----PNLKNGCKFSLEEERIVI   76 (302)
Q Consensus         5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~---l~~Rt~~qCR~Rw~~~L~-----p~lk~~~~WT~EED~lLl   76 (302)
                      ++..++++||.|||+.|+++|++||.++|..|+...   +++||+.+|++||.++|+     |.++++.+|+++|+.+|+
T Consensus        12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~   91 (121)
T 2juh_A           12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVL   91 (121)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHH
Confidence            457899999999999999999999988999996543   489999999999999998     999998789999999999


Q ss_pred             HHHHHhCCcchh
Q 038795           77 ELQAQFGNKWAR   88 (302)
Q Consensus        77 elv~~~G~kWs~   88 (302)
                      +++..+||+|++
T Consensus        92 ~~h~~~gn~~~~  103 (121)
T 2juh_A           92 AAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHccchhc
Confidence            999999999987

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.71  E-value=3.5e-18  Score=130.27  Aligned_cols=59  Identities=27%  Similarity=0.339  Sum_probs=47.2

Q ss_pred             cccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHH
Q 038795           49 CRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQ  109 (302)
Q Consensus        49 CR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~  109 (302)
                      ..-||.++|+|.++++ +||+|||++|+++|.+||++|+.||+.| |||+++|||||+.+.
T Consensus         9 ~~~~~~~~ldP~i~k~-~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~   67 (73)
T 2llk_A            9 SGRENLYFQGDRNHVG-KYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK   67 (73)
T ss_dssp             ----------CCCCCC-SSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred             cCcceeeecCCCCCCC-CCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            4458999999999999 9999999999999999999999999999 999999999998764

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.67  E-value=1.9e-17  Score=120.59  Aligned_cols=58  Identities=31%  Similarity=0.595  Sum_probs=53.5

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCC
Q 038795            4 KREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLK   62 (302)
Q Consensus         4 kK~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk   62 (302)
                      ..+.++||+||+|||++|+++|.+||.++|..||. .|++|++.||++||.++|+|.++
T Consensus         2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLAS-HFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHH-HCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HccCCCHHHHHHHHHHHcCCccC
Confidence            45789999999999999999999999889999965 59999999999999999999884

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.66  E-value=2.2e-17  Score=117.03  Aligned_cols=52  Identities=56%  Similarity=1.062  Sum_probs=48.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCC
Q 038795            8 IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN   60 (302)
Q Consensus         8 lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~   60 (302)
                      ++||+||+|||++|+++|.+||.++|..|| +.|++|+++|||+||.++|+|.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHH-HHcCCCCHHHHHHHHHHHcCcC
Confidence            589999999999999999999987899995 5599999999999999999984

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.66  E-value=3.8e-17  Score=135.70  Aligned_cols=80  Identities=20%  Similarity=0.370  Sum_probs=72.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc---cCCCCcccccccccccc-----CCCCCCCCCCCHHH-HHHH
Q 038795            5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKG---LLQRTGKSCRLRWVNKL-----RPNLKNGCKFSLEE-ERIV   75 (302)
Q Consensus         5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~---l~~Rt~~qCR~Rw~~~L-----~p~lk~~~~WT~EE-D~lL   75 (302)
                      +...++++||.|||+.|+++|++||.++|..|+...   +.+||+.+|++||.+++     +|.++++ .|+++| +.+|
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~-~~~p~e~~~~v  104 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRG-APVPQELLDRV  104 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCC-SSCCHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCC-CCCCHHHHHHH
Confidence            346789999999999999999999988999996542   48999999999999999     7999998 899999 8999


Q ss_pred             HHHHHHhCCc
Q 038795           76 IELQAQFGNK   85 (302)
Q Consensus        76 lelv~~~G~k   85 (302)
                      ++++..||++
T Consensus       105 ~~~h~~~g~~  114 (122)
T 2roh_A          105 LAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhhH
Confidence            9999999975

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=2.8e-16  Score=116.54  Aligned_cols=59  Identities=22%  Similarity=0.307  Sum_probs=55.1

Q ss_pred             cccCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 038795           55 NKLRPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARI  115 (302)
Q Consensus        55 ~~L~p~lk~~~~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r~  115 (302)
                      .+|+|.++++ .||.|||++|+++|.+||++|..||+ ++|||++|||+||+.+++...++
T Consensus         1 g~L~P~~~k~-~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~   59 (66)
T 2din_A            1 GSSGSSGKKT-EWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQR   59 (66)
T ss_dssp             CCCSSSSSCC-CCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCC-CCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcC
Confidence            3799999999 89999999999999999999999999 88999999999999999887654

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.63  E-value=5e-17  Score=115.06  Aligned_cols=52  Identities=38%  Similarity=0.701  Sum_probs=46.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCC
Q 038795            8 IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN   60 (302)
Q Consensus         8 lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~   60 (302)
                      ++||+||+|||++|+++|.+||.++|..||. .|++|++.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHH-TSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HcCCCCHHHHHHHHHHHcCcC
Confidence            5799999999999999999999779999954 599999999999999999984

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.63  E-value=2.8e-16  Score=118.64  Aligned_cols=57  Identities=23%  Similarity=0.357  Sum_probs=53.0

Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHHHHH
Q 038795           57 LRPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLAR  114 (302)
Q Consensus        57 L~p~lk~~~~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r  114 (302)
                      ++|.++++ +||.|||++|+++|.+||++|..||++|+|||++|||+||+.++++..+
T Consensus         3 ~~p~~~~~-~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~   59 (72)
T 2cu7_A            3 SGSSGYSV-KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK   59 (72)
T ss_dssp             CCCSSCCC-CCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCcCCC-CCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence            56888888 8999999999999999999999999999999999999999999887644

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.62  E-value=1.1e-16  Score=119.90  Aligned_cols=61  Identities=30%  Similarity=0.460  Sum_probs=55.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccC--CCCccccccccccccCCCCCCC
Q 038795            3 GKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLL--QRTGKSCRLRWVNKLRPNLKNG   64 (302)
Q Consensus         3 ~kK~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~--~Rt~~qCR~Rw~~~L~p~lk~~   64 (302)
                      .+++..++|+||+|||++|+++|++||.++|..||. .++  +|++.||++||.++|+|.+.++
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~l~p~i~k~   65 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKKLKLISS   65 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHH-HSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHH-HcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence            356678999999999999999999999889999965 488  9999999999999999999877

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.56  E-value=4.9e-16  Score=115.32  Aligned_cols=56  Identities=29%  Similarity=0.534  Sum_probs=48.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc-cCCCCccccccccccccCCCC
Q 038795            6 EEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKG-LLQRTGKSCRLRWVNKLRPNL   61 (302)
Q Consensus         6 ~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~-l~~Rt~~qCR~Rw~~~L~p~l   61 (302)
                      ...+|++||+|||++|+++|++||.++|..||... +.+|++.||++||.+++++.|
T Consensus         7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A            7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            34678999999999999999999988999996542 349999999999999999876

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.56  E-value=7.5e-16  Score=112.50  Aligned_cols=57  Identities=18%  Similarity=0.447  Sum_probs=51.4

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCC
Q 038795            3 GKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN   60 (302)
Q Consensus         3 ~kK~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~   60 (302)
                      |..+.+.+++||+|||++|+++|++||.++|..|| +.|++|++.|||+||.++|.+.
T Consensus         1 gss~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            1 GSSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHH-HHHTTSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHH-HHhCCCCHHHHHHHHHHHccCC
Confidence            34567999999999999999999999988999995 4599999999999999999764

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.55  E-value=3.4e-15  Score=108.65  Aligned_cols=52  Identities=27%  Similarity=0.456  Sum_probs=48.0

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhC-CcchhhhccCCCCCHHHHHHHHHHHHH
Q 038795           58 RPNLKNGCKFSLEEERIVIELQAQFG-NKWARIATYLPGRTDNDVKNFWSSRQK  110 (302)
Q Consensus        58 ~p~lk~~~~WT~EED~lLlelv~~~G-~kWs~IAk~LpgRT~nq~KnRw~~l~k  110 (302)
                      +|.++++ +||+|||++|+++|.+|| ++|+.||++|+|||+.||++||+.+++
T Consensus         3 ~p~~~k~-~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~   55 (60)
T 2d9a_A            3 SGSSGKV-KWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS   55 (60)
T ss_dssp             SCCCCCS-CCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSC
T ss_pred             CCCCCCC-CCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcC
Confidence            4678888 899999999999999999 699999999999999999999988753

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.55  E-value=5e-15  Score=104.71  Aligned_cols=49  Identities=33%  Similarity=0.594  Sum_probs=44.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-cchhhhccCCCCCHHHHHHHHHHHHH
Q 038795           61 LKNGCKFSLEEERIVIELQAQFGN-KWARIATYLPGRTDNDVKNFWSSRQK  110 (302)
Q Consensus        61 lk~~~~WT~EED~lLlelv~~~G~-kWs~IAk~LpgRT~nq~KnRw~~l~k  110 (302)
                      |+++ +||.|||.+|+++|.+||. +|+.||++|+|||++||++||+.+++
T Consensus         1 i~~~-~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1guu_A            1 LGKT-RWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN   50 (52)
T ss_dssp             --CC-CCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCC-CCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            3567 8999999999999999997 99999999999999999999998763

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=1e-15  Score=116.10  Aligned_cols=61  Identities=28%  Similarity=0.386  Sum_probs=55.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCC-----CCcccccccccCCCCccccccccccccCCCCCCC
Q 038795            3 GKREEIRKGPWKAEEDEVLINHVKKYGP-----RDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNG   64 (302)
Q Consensus         3 ~kK~~lrKG~WT~EED~~L~~~V~~~G~-----~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~   64 (302)
                      |.++.+++|+||+|||++|+++|.+||.     .+|..||. .|++||+.||++||++||.+.++.+
T Consensus         1 gs~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~-~~~~Rt~~qcr~r~~~~l~~~~k~g   66 (75)
T 2yum_A            1 GSSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD-ELGNRTAKQVASQVQKYFIKLTKAG   66 (75)
T ss_dssp             CCCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH-HHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH-HhCCCCHHHHHHHHHHHHHHHHhcC
Confidence            5688999999999999999999999996     78999955 5999999999999999999888776

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.53  E-value=1.6e-15  Score=107.99  Aligned_cols=49  Identities=33%  Similarity=0.554  Sum_probs=45.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcccccccccC--CCCccccccccccccC
Q 038795            9 RKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLL--QRTGKSCRLRWVNKLR   58 (302)
Q Consensus         9 rKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~--~Rt~~qCR~Rw~~~L~   58 (302)
                      +||+||+|||++|+++|.+||.++|..||. .++  +|++.||++||.++++
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCCCHHHHHHHHHHHHc
Confidence            589999999999999999999889999965 488  9999999999999885

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.52  E-value=9.9e-15  Score=103.24  Aligned_cols=48  Identities=29%  Similarity=0.645  Sum_probs=44.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-cchhhhccCCCCCHHHHHHHHHHHH
Q 038795           61 LKNGCKFSLEEERIVIELQAQFGN-KWARIATYLPGRTDNDVKNFWSSRQ  109 (302)
Q Consensus        61 lk~~~~WT~EED~lLlelv~~~G~-kWs~IAk~LpgRT~nq~KnRw~~l~  109 (302)
                      |+++ +||+|||++|+++|.+||. +|..||++|+|||++||++||+.++
T Consensus         1 l~k~-~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L   49 (52)
T 1gvd_A            1 LIKG-PWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL   49 (52)
T ss_dssp             CCCC-SCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred             CCCC-CCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence            4577 8999999999999999996 6999999999999999999998765

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.52  E-value=1.2e-14  Score=103.43  Aligned_cols=49  Identities=22%  Similarity=0.410  Sum_probs=45.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CcchhhhccCC--CCCHHHHHHHHHHHHHH
Q 038795           62 KNGCKFSLEEERIVIELQAQFG-NKWARIATYLP--GRTDNDVKNFWSSRQKR  111 (302)
Q Consensus        62 k~~~~WT~EED~lLlelv~~~G-~kWs~IAk~Lp--gRT~nq~KnRw~~l~kr  111 (302)
                      +++ +||+|||++|+++|.+|| ++|+.||..|+  |||+.||++||..+++.
T Consensus         1 kr~-~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQ-AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCC-CCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCC-CCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            356 899999999999999999 79999999999  99999999999998763

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.51  E-value=1.1e-14  Score=106.29  Aligned_cols=50  Identities=14%  Similarity=0.308  Sum_probs=46.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CcchhhhccCCCCCHHHHHHHHHHHH
Q 038795           59 PNLKNGCKFSLEEERIVIELQAQFG-NKWARIATYLPGRTDNDVKNFWSSRQ  109 (302)
Q Consensus        59 p~lk~~~~WT~EED~lLlelv~~~G-~kWs~IAk~LpgRT~nq~KnRw~~l~  109 (302)
                      +.+.++ +||+|||++|+++|.+|| ++|..||++|+|||+.||++||+.++
T Consensus         4 ~~~~~~-~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l   54 (60)
T 1x41_A            4 GSSGDP-SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF   54 (60)
T ss_dssp             CCCCCS-SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred             CCCCCC-CCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHc
Confidence            567777 899999999999999999 89999999999999999999998765

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.51  E-value=2.3e-14  Score=107.11  Aligned_cols=54  Identities=20%  Similarity=0.342  Sum_probs=49.1

Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHhC-CcchhhhccCC--CCCHHHHHHHHHHHHHH
Q 038795           57 LRPNLKNGCKFSLEEERIVIELQAQFG-NKWARIATYLP--GRTDNDVKNFWSSRQKR  111 (302)
Q Consensus        57 L~p~lk~~~~WT~EED~lLlelv~~~G-~kWs~IAk~Lp--gRT~nq~KnRw~~l~kr  111 (302)
                      ..+..+++ .||+|||++|+++|.+|| ++|+.||++|+  |||+.||++||+.+++.
T Consensus         4 ~~~~~~r~-~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p   60 (69)
T 1ity_A            4 KHRARKRQ-AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   60 (69)
T ss_dssp             TTCSSSCC-CCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCC-CCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence            45566677 899999999999999999 79999999999  99999999999998864

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1.3e-15  Score=113.00  Aligned_cols=57  Identities=23%  Similarity=0.406  Sum_probs=52.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCC
Q 038795            5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNG   64 (302)
Q Consensus         5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~   64 (302)
                      .+.++||+||+|||++|+++|+.||. +|..|| + ++|||+.|||+||.++|++.++++
T Consensus         4 ~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia-~-~~gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            4 GSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIA-P-IIGRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             SSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHH-H-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHh-c-ccCcCHHHHHHHHHHHhChHhcCC
Confidence            57899999999999999999999995 899995 4 789999999999999999987665

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.47  E-value=6.7e-15  Score=106.88  Aligned_cols=50  Identities=24%  Similarity=0.474  Sum_probs=45.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccC-CCCcccccccccccc
Q 038795            7 EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLL-QRTGKSCRLRWVNKL   57 (302)
Q Consensus         7 ~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~-~Rt~~qCR~Rw~~~L   57 (302)
                      .+.+++||+|||++|+++|++||.++|..|| +.|+ +||+.|||+||.+++
T Consensus         6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA-~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            6 SGFDENWGADEELLLIDACETLGLGNWADIA-DYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHH-HHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHHCCCCCHHHHHHHHHHHc
Confidence            4678999999999999999999999999995 4588 999999999999875

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.21  E-value=3.4e-15  Score=117.36  Aligned_cols=57  Identities=26%  Similarity=0.323  Sum_probs=53.1

Q ss_pred             ccCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHHHH
Q 038795           56 KLRPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLA  113 (302)
Q Consensus        56 ~L~p~lk~~~~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~  113 (302)
                      .+.|.++++ +||.|||.+|+++|.+||++|+.||.+|+|||++|||+||+.++++..
T Consensus         9 ~~~p~~~~~-~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~   65 (89)
T 2ltp_A            9 SGRENLYFQ-GWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN   65 (89)
Confidence            567888888 899999999999999999999999999999999999999999988753

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=4.2e-14  Score=105.95  Aligned_cols=52  Identities=25%  Similarity=0.482  Sum_probs=48.0

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhC-CcchhhhccCCCCCHHHHHHHHHHHHH
Q 038795           58 RPNLKNGCKFSLEEERIVIELQAQFG-NKWARIATYLPGRTDNDVKNFWSSRQK  110 (302)
Q Consensus        58 ~p~lk~~~~WT~EED~lLlelv~~~G-~kWs~IAk~LpgRT~nq~KnRw~~l~k  110 (302)
                      .+.++++ .||.|||++|+++|.+|| ++|..||.+|+|||+.||++||+.+++
T Consensus         4 ~~~~k~~-~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~   56 (70)
T 2dim_A            4 GSSGKGG-VWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLD   56 (70)
T ss_dssp             CSCSTTC-CCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred             CCCCCCC-CCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence            4667788 899999999999999999 899999999999999999999988764

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.46  E-value=7.1e-14  Score=103.63  Aligned_cols=48  Identities=29%  Similarity=0.567  Sum_probs=43.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CcchhhhccCC--CCCHHHHHHHHHHHHH
Q 038795           62 KNGCKFSLEEERIVIELQAQFG-NKWARIATYLP--GRTDNDVKNFWSSRQK  110 (302)
Q Consensus        62 k~~~~WT~EED~lLlelv~~~G-~kWs~IAk~Lp--gRT~nq~KnRw~~l~k  110 (302)
                      +++ +||+|||++|+++|.+|| ++|+.||+.++  |||+.|||+||++++|
T Consensus        10 kk~-~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k   60 (64)
T 3sjm_A           10 KKQ-KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR   60 (64)
T ss_dssp             CCC-CCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCC-CCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence            455 899999999999999999 68999999865  9999999999998875

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.45  E-value=7.1e-14  Score=101.45  Aligned_cols=49  Identities=22%  Similarity=0.498  Sum_probs=44.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CcchhhhccCC-CCCHHHHHHHHHHH
Q 038795           59 PNLKNGCKFSLEEERIVIELQAQFG-NKWARIATYLP-GRTDNDVKNFWSSR  108 (302)
Q Consensus        59 p~lk~~~~WT~EED~lLlelv~~~G-~kWs~IAk~Lp-gRT~nq~KnRw~~l  108 (302)
                      ..+.++ .||++||++|+++|.+|| ++|..||++|+ |||+.||++||..+
T Consensus         5 ~p~~~~-~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~   55 (58)
T 2elk_A            5 SSGFDE-NWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT   55 (58)
T ss_dssp             CCSCCC-CCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred             CCCCCC-CCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            345567 899999999999999999 89999999999 99999999999875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=2.5e-14  Score=108.41  Aligned_cols=54  Identities=22%  Similarity=0.337  Sum_probs=49.3

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhC------CcchhhhccCCCCCHHHHHHHHHHHHHHH
Q 038795           58 RPNLKNGCKFSLEEERIVIELQAQFG------NKWARIATYLPGRTDNDVKNFWSSRQKRL  112 (302)
Q Consensus        58 ~p~lk~~~~WT~EED~lLlelv~~~G------~kWs~IAk~LpgRT~nq~KnRw~~l~kr~  112 (302)
                      +|.+.++ .||.|||++|+++|.+||      ++|..||++|+|||+.||++||+.++++.
T Consensus         3 ~p~~~~~-~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~   62 (75)
T 2yum_A            3 SGSSGNQ-LWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKL   62 (75)
T ss_dssp             CCCCCSS-CCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGG
T ss_pred             CCCCCCC-CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            4677788 899999999999999999      78999999999999999999998877654

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.44  E-value=1e-14  Score=109.97  Aligned_cols=58  Identities=22%  Similarity=0.331  Sum_probs=52.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCC
Q 038795            5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNG   64 (302)
Q Consensus         5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~   64 (302)
                      .+.+++|+||+|||++|+++|+.|| .+|..||. .|++||+.||+.||+++|++.++.+
T Consensus         4 ~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~-~~~~Rt~~q~k~r~~~~l~~~~~~g   61 (72)
T 2cu7_A            4 GSSGYSVKWTIEEKELFEQGLAKFG-RRWTKISK-LIGSRTVLQVKSYARQYFKNKVKCG   61 (72)
T ss_dssp             CCSSCCCCCCHHHHHHHHHHHHHTC-SCHHHHHH-HHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred             CCCcCCCCCCHHHHHHHHHHHHHHC-cCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhcC
Confidence            4678999999999999999999999 58999954 6999999999999999998877654

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.44  E-value=5e-14  Score=114.19  Aligned_cols=82  Identities=18%  Similarity=0.313  Sum_probs=66.4

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc---cCCCCcccccccccccc-----CCCCCCCCCCCHHHHHH
Q 038795            3 GKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKG---LLQRTGKSCRLRWVNKL-----RPNLKNGCKFSLEEERI   74 (302)
Q Consensus         3 ~kK~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~---l~~Rt~~qCR~Rw~~~L-----~p~lk~~~~WT~EED~l   74 (302)
                      ..++..++++||+|||+.|+++|++||.++|..|+...   +++||+.+|++||.+++     +|.++++.+.-.+--.+
T Consensus         6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r   85 (105)
T 2aje_A            6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR   85 (105)
T ss_dssp             ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence            45567899999999999999999999988999996542   38999999999999998     68998985554444455


Q ss_pred             HHHHHHHhCC
Q 038795           75 VIELQAQFGN   84 (302)
Q Consensus        75 Llelv~~~G~   84 (302)
                      +++|+..+|+
T Consensus        86 v~~~~~~~~~   95 (105)
T 2aje_A           86 VLNAHGYWTQ   95 (105)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888877764

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.43  E-value=6.5e-14  Score=109.07  Aligned_cols=71  Identities=20%  Similarity=0.365  Sum_probs=63.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccc---ccCCCCcccccccccccc-----CCCCCCCCCCCHHHHHHHHHHHHH
Q 038795           11 GPWKAEEDEVLINHVKKYGPRDWSSIRSK---GLLQRTGKSCRLRWVNKL-----RPNLKNGCKFSLEEERIVIELQAQ   81 (302)
Q Consensus        11 G~WT~EED~~L~~~V~~~G~~nW~~Ias~---~l~~Rt~~qCR~Rw~~~L-----~p~lk~~~~WT~EED~lLlelv~~   81 (302)
                      ++||+|||+.|+++|++||.++|..|+..   .+++||+.+|++||.+++     .|.++++.+...+....++.++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999998899999643   379999999999999988     688888889999998999988854

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.35  E-value=8.5e-13  Score=100.40  Aligned_cols=50  Identities=12%  Similarity=0.300  Sum_probs=45.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC----CcchhhhccCCCCCHHHHHHHHHHHHH
Q 038795           60 NLKNGCKFSLEEERIVIELQAQFG----NKWARIATYLPGRTDNDVKNFWSSRQK  110 (302)
Q Consensus        60 ~lk~~~~WT~EED~lLlelv~~~G----~kWs~IAk~LpgRT~nq~KnRw~~l~k  110 (302)
                      .+.++ .||.+||.+|++++.+||    ++|.+||++|||||++||++||+.+++
T Consensus        15 ~~~~~-~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           15 RSAEE-PWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TCSSC-CCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             ccCCC-CCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            44566 899999999999999999    789999999999999999999998864

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.34  E-value=2.4e-13  Score=103.42  Aligned_cols=53  Identities=26%  Similarity=0.360  Sum_probs=45.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCC
Q 038795            5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNL   61 (302)
Q Consensus         5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~l   61 (302)
                      .+.++||+||+|||++|+++|.+|| .+|..||.. + |||+.||+.||.. |....
T Consensus        18 dP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~-l-gRt~~q~knRw~~-L~~~~   70 (73)
T 2llk_A           18 GDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAA-L-GRSASSVKDRCRL-MKDTC   70 (73)
T ss_dssp             -CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHH-H-TSCHHHHHHHHHH-CSCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHH-h-CCCHHHHHHHHHH-HHHHc
Confidence            4789999999999999999999999 559999654 7 9999999999974 44443

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.32  E-value=3.9e-13  Score=111.90  Aligned_cols=82  Identities=24%  Similarity=0.368  Sum_probs=58.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 038795            5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGN   84 (302)
Q Consensus         5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~   84 (302)
                      .+.+++|+||+|||++|+++|..|| .+|..|| +.|+|||+.||+.||.++|++.+..+ .|+.+-    +......+.
T Consensus        49 ~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia-~~l~gRt~~~~k~rw~~~l~~~~~~~-~~~~~~----~~p~~~kk~  121 (131)
T 3zqc_A           49 DPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIA-KLIPGRTDNAIKNRWNSSISKRISTN-SNHKEI----LLPDRSKKR  121 (131)
T ss_dssp             STTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHT-TTSTTCCHHHHHHHHHHTTGGGCCCC-TTSCCC----CCCCCC---
T ss_pred             CccccCCCCCHHHHHHHHHHHHHHC-cCHHHHH-HHcCCCCHHHHHHHHHHHHHHHhhcC-CCcccc----cCchhhhhh
Confidence            4678999999999999999999999 7899995 56999999999999999999999877 676551    111112245


Q ss_pred             cchhhhccC
Q 038795           85 KWARIATYL   93 (302)
Q Consensus        85 kWs~IAk~L   93 (302)
                      +|+.|++.|
T Consensus       122 ~~~~i~k~~  130 (131)
T 3zqc_A          122 KAADVPKKL  130 (131)
T ss_dssp             ---------
T ss_pred             hhhhcchhc
Confidence            688777655

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.32  E-value=4e-13  Score=103.58  Aligned_cols=51  Identities=20%  Similarity=0.490  Sum_probs=46.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccc
Q 038795            4 KREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNK   56 (302)
Q Consensus         4 kK~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~   56 (302)
                      ++....+++||+|||++|+++|++|| .+|..|| ++|++||..||+.||.++
T Consensus        12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA-~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVS-EHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHH-HHHSSCCHHHHHHHHTTS
T ss_pred             ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHH-HHcCCCCHHHHHHHHHHh
Confidence            34457789999999999999999999 8999995 569999999999999998

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.28  E-value=1.6e-12  Score=100.14  Aligned_cols=46  Identities=11%  Similarity=0.330  Sum_probs=42.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHH
Q 038795           62 KNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSR  108 (302)
Q Consensus        62 k~~~~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l  108 (302)
                      .++ .||.|||.+|++++.+||++|..||++|++||+.||++||..+
T Consensus        17 ~~~-~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           17 AGR-EWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CSC-CCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cCC-CcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            355 8999999999999999999999999999999999999999754

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.93  E-value=4e-13  Score=105.55  Aligned_cols=52  Identities=23%  Similarity=0.380  Sum_probs=47.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCC
Q 038795            6 EEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP   59 (302)
Q Consensus         6 ~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p   59 (302)
                      +.+++|+||+|||++|+++|..|| .+|..|| ..|+|||+.||+.||.++|+.
T Consensus        12 p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~IA-~~l~gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           12 ENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIA-RMVGSKTVSQCKNFYFNYKKR   63 (89)
Confidence            568999999999999999999999 4899995 569999999999999999864

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.27  E-value=4.1e-12  Score=93.62  Aligned_cols=48  Identities=21%  Similarity=0.358  Sum_probs=44.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCcchhhh---ccCCCCCHHHHHHHHHHHHHH
Q 038795           63 NGCKFSLEEERIVIELQAQFGNKWARIA---TYLPGRTDNDVKNFWSSRQKR  111 (302)
Q Consensus        63 ~~~~WT~EED~lLlelv~~~G~kWs~IA---k~LpgRT~nq~KnRw~~l~kr  111 (302)
                      +. +||+||++.|+++|++||.+|+.|+   .++++||+.+||+||+.++|+
T Consensus         8 r~-~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            8 RK-DFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             SS-SCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CC-CCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            44 8999999999999999999999999   678999999999999998764

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.27  E-value=5.8e-12  Score=98.01  Aligned_cols=48  Identities=23%  Similarity=0.445  Sum_probs=44.5

Q ss_pred             CCCHHHHHHHHHHHHHhCC-cchhhhcc----CCCCCHHHHHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFGN-KWARIATY----LPGRTDNDVKNFWSSRQKRLA  113 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G~-kWs~IAk~----LpgRT~nq~KnRw~~l~kr~~  113 (302)
                      +||.|||+.|+++|++||. +|+.|++.    |+|||+++||+||++++++..
T Consensus         2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            7999999999999999996 99999985    899999999999999988653

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.24  E-value=1e-12  Score=99.96  Aligned_cols=54  Identities=17%  Similarity=0.450  Sum_probs=47.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhC---CCCcccccccccCCCCccccccccccccC
Q 038795            4 KREEIRKGPWKAEEDEVLINHVKKYG---PRDWSSIRSKGLLQRTGKSCRLRWVNKLR   58 (302)
Q Consensus         4 kK~~lrKG~WT~EED~~L~~~V~~~G---~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~   58 (302)
                      ++....+++||.|||++|+++|..||   ..+|..|| ++|+|||..||+.||.+++.
T Consensus        12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA-~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIA-RCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHG-GGCSSSCHHHHHHHHHHHHS
T ss_pred             cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHH-HHcCCCCHHHHHHHHHHHHH
Confidence            34568899999999999999999999   35799995 56999999999999998764

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.23  E-value=2.7e-12  Score=102.57  Aligned_cols=54  Identities=30%  Similarity=0.625  Sum_probs=47.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCC
Q 038795            5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN   60 (302)
Q Consensus         5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~   60 (302)
                      .+.+++|+||+|||++|+++|.+|| .+|..|| +.|+|||+.||+.||..+|+..
T Consensus        51 ~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia-~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           51 NPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIA-KLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHS-SCHHHHH-TTCTTCCHHHHHHHHHHHTC--
T ss_pred             CCcccccCCCHHHHHHHHHHHHHhC-CCHHHHH-HHcCCCCHHHHHHHHHHHHhcc
Confidence            4678999999999999999999999 6899995 5699999999999999988754

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.22  E-value=1.1e-11  Score=102.44  Aligned_cols=51  Identities=27%  Similarity=0.511  Sum_probs=46.8

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHH
Q 038795           58 RPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQ  109 (302)
Q Consensus        58 ~p~lk~~~~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~  109 (302)
                      .+.++++ .||+|||++|+++|.+||.+|..||..|+|||+.||+.||..++
T Consensus         6 ~~~~kk~-~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l   56 (126)
T 3osg_A            6 LKAAKKQ-KFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL   56 (126)
T ss_dssp             -CBCSSC-CCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred             cCCCCCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhc
Confidence            4567788 89999999999999999999999999999999999999998765

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.21  E-value=1.9e-11  Score=97.05  Aligned_cols=51  Identities=24%  Similarity=0.422  Sum_probs=46.7

Q ss_pred             CCCHHHHHHHHHHHHHhC----CcchhhhccCCCCCHHHHHHHHHHHHHHHHHHh
Q 038795           66 KFSLEEERIVIELQAQFG----NKWARIATYLPGRTDNDVKNFWSSRQKRLARIL  116 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G----~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r~~  116 (302)
                      .||.|||++|++++.+||    ++|.+||++|||||+++|++||+.++..+..+.
T Consensus        10 ~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~ie   64 (93)
T 2cjj_A           10 PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIE   64 (93)
T ss_dssp             SCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence            799999999999999996    789999999999999999999999988765543

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.20  E-value=1.8e-11  Score=101.47  Aligned_cols=55  Identities=22%  Similarity=0.376  Sum_probs=49.1

Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHhCC-cchhhhcc----CCCCCHHHHHHHHHHHHHHH
Q 038795           57 LRPNLKNGCKFSLEEERIVIELQAQFGN-KWARIATY----LPGRTDNDVKNFWSSRQKRL  112 (302)
Q Consensus        57 L~p~lk~~~~WT~EED~lLlelv~~~G~-kWs~IAk~----LpgRT~nq~KnRw~~l~kr~  112 (302)
                      +.+..+++ +||.|||+.|+++|.+||. +|+.|++.    |+|||+++||+||++++++.
T Consensus        11 ~~~rr~r~-~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~   70 (121)
T 2juh_A           11 LSQRRIRR-PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   70 (121)
T ss_dssp             CCCCCSSC-CCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred             ccCCCCCC-CCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence            45566677 8999999999999999996 99999987    49999999999999998864

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.19  E-value=2.4e-11  Score=98.42  Aligned_cols=52  Identities=19%  Similarity=0.368  Sum_probs=46.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-cchhhhccC----CCCCHHHHHHHHHHHHHHH
Q 038795           60 NLKNGCKFSLEEERIVIELQAQFGN-KWARIATYL----PGRTDNDVKNFWSSRQKRL  112 (302)
Q Consensus        60 ~lk~~~~WT~EED~lLlelv~~~G~-kWs~IAk~L----pgRT~nq~KnRw~~l~kr~  112 (302)
                      ..+++ +||.|||+.|+++|.+||. +|+.|++.+    +|||+.+||+||++++++.
T Consensus        10 rr~r~-~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A           10 RRIRR-PFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             CCCCC-SCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCC-CCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            44566 8999999999999999996 999999865    8999999999999988743

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.16  E-value=1.2e-11  Score=112.88  Aligned_cols=51  Identities=16%  Similarity=0.426  Sum_probs=45.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCc------chhhhccCCCCCHHHHHHHHHHHHHH
Q 038795           60 NLKNGCKFSLEEERIVIELQAQFGNK------WARIATYLPGRTDNDVKNFWSSRQKR  111 (302)
Q Consensus        60 ~lk~~~~WT~EED~lLlelv~~~G~k------Ws~IAk~LpgRT~nq~KnRw~~l~kr  111 (302)
                      .++++ .||+|||++|+++|.+||++      |..||++|+|||+++|||||+.++++
T Consensus         5 ~~~k~-~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~   61 (246)
T 1ign_A            5 SHNKA-SFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK   61 (246)
T ss_dssp             ---CC-CCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred             CCCCC-CCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            45566 89999999999999999975      99999999999999999999998865

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.15  E-value=3.8e-12  Score=102.41  Aligned_cols=55  Identities=33%  Similarity=0.622  Sum_probs=49.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCC
Q 038795            5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNL   61 (302)
Q Consensus         5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~l   61 (302)
                      .+.+++|+||+|||++|+++|..|| .+|..|| +.|+|||+.||+.||..+++...
T Consensus        48 ~p~i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia-~~l~gRt~~~~k~rw~~l~r~~~  102 (107)
T 2k9n_A           48 NPALRTDPWSPEEDMLLDQKYAEYG-PKWNKIS-KFLKNRSDNNIRNRWMMIARHRA  102 (107)
T ss_dssp             SSCCTTCCCCHHHHHHHHHHHHHTC-SCHHHHH-HHHSSSCHHHHHHHHHHHHHHHH
T ss_pred             cccccccccCHHHHHHHHHHHHHhC-cCHHHHH-HHCCCCCHHHHHHHHHHHHhhHH
Confidence            4678999999999999999999999 5899995 56999999999999998876543

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.10  E-value=8.5e-11  Score=97.54  Aligned_cols=51  Identities=20%  Similarity=0.405  Sum_probs=45.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-cchhhhcc----CCCCCHHHHHHHHHHHHHHH
Q 038795           61 LKNGCKFSLEEERIVIELQAQFGN-KWARIATY----LPGRTDNDVKNFWSSRQKRL  112 (302)
Q Consensus        61 lk~~~~WT~EED~lLlelv~~~G~-kWs~IAk~----LpgRT~nq~KnRw~~l~kr~  112 (302)
                      .+++ +||.|||+.|+++|++||. +|+.|++.    |+|||+.+||+||++++++.
T Consensus        29 r~r~-~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~   84 (122)
T 2roh_A           29 RIRR-PFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA   84 (122)
T ss_dssp             CCCC-CCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCC-CCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            3466 8999999999999999995 99999986    48999999999999998765

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.97  E-value=6.8e-10  Score=88.04  Aligned_cols=65  Identities=15%  Similarity=0.198  Sum_probs=58.8

Q ss_pred             cccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhccC-----CCCCHHHHHHHHHHHHHHHHHHh
Q 038795           47 KSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYL-----PGRTDNDVKNFWSSRQKRLARIL  116 (302)
Q Consensus        47 ~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~kWs~IAk~L-----pgRT~nq~KnRw~~l~kr~~r~~  116 (302)
                      .=+.++|.++|.+    . .||.||+..|++|+.+||.+|..|+..+     ++||..+||+||..+.+++.+..
T Consensus        18 ~yt~eeY~~~L~~----~-~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           18 VYSEQEYQLYLHD----D-AWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCHHHHHHHTCB----T-TBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHcCC----C-CCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            5678899999976    4 7999999999999999999999999988     58999999999999999887654

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=9.7e-10  Score=80.33  Aligned_cols=45  Identities=18%  Similarity=0.239  Sum_probs=42.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHH
Q 038795           65 CKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQ  109 (302)
Q Consensus        65 ~~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~  109 (302)
                      .+||++|++++++++.+||++|..||.+|++||..+|.++|....
T Consensus        13 ~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           13 NVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            389999999999999999999999999999999999999997643

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.91  E-value=1.7e-10  Score=91.49  Aligned_cols=48  Identities=19%  Similarity=0.473  Sum_probs=42.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---CCCcccccccccCCCCcccccccccccc
Q 038795            9 RKGPWKAEEDEVLINHVKKYG---PRDWSSIRSKGLLQRTGKSCRLRWVNKL   57 (302)
Q Consensus         9 rKG~WT~EED~~L~~~V~~~G---~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L   57 (302)
                      .+++||.|||++|.+++.+||   ..+|..||. .|+|||..||+.||.+++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~-~vpGRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVAR-AVEGRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HSTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHHH
Confidence            468899999999999999997   457999954 599999999999998765

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.79  E-value=6e-09  Score=78.89  Aligned_cols=48  Identities=21%  Similarity=0.327  Sum_probs=42.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC----CcchhhhccCCCCCHHHHHHHHHHHHHH
Q 038795           62 KNGCKFSLEEERIVIELQAQFG----NKWARIATYLPGRTDNDVKNFWSSRQKR  111 (302)
Q Consensus        62 k~~~~WT~EED~lLlelv~~~G----~kWs~IAk~LpgRT~nq~KnRw~~l~kr  111 (302)
                      +.+ .||.||+++|.+++.+|+    ++|.+||.++ |||..+|++||+.++..
T Consensus         7 ~~~-~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            7 GAP-EWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCC-CCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCC-CCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            344 799999999999999997    6899999998 99999999999888643

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.75  E-value=2.5e-09  Score=78.80  Aligned_cols=51  Identities=20%  Similarity=0.211  Sum_probs=44.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcccccc--cccCCCCccccccccccccCC
Q 038795            8 IRKGPWKAEEDEVLINHVKKYGPRDWSSIRS--KGLLQRTGKSCRLRWVNKLRP   59 (302)
Q Consensus         8 lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias--~~l~~Rt~~qCR~Rw~~~L~p   59 (302)
                      .++++||+|||+.|+++|++||. +|..|+.  ..+.+||...+++||.+..+.
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            46889999999999999999995 9999953  457899999999999987754

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.69  E-value=1e-08  Score=92.90  Aligned_cols=47  Identities=19%  Similarity=0.484  Sum_probs=44.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHH
Q 038795           65 CKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR  111 (302)
Q Consensus        65 ~~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr  111 (302)
                      ..||.||..++++++.+||++|..||+.+++||.+|||++|+...||
T Consensus       134 ~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          134 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             SSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            38999999999999999999999999999999999999999988776

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.69  E-value=5.2e-09  Score=76.41  Aligned_cols=50  Identities=14%  Similarity=0.257  Sum_probs=43.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCcccccccccccc
Q 038795            6 EEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKL   57 (302)
Q Consensus         6 ~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L   57 (302)
                      ..-..++||+||++++.+++.+|| ++|..|| ..|++|+..||+.+|....
T Consensus         8 ~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia-~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            8 DRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIA-SYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCSCCCSCCHHHHHHHHHHHHHST-TCHHHHH-HHCTTSCHHHHHHHHHHHT
T ss_pred             ccccCCCCCHHHHHHHHHHHHHhC-CCHHHHH-HHcCCCCHHHHHHHHHHhc
Confidence            345668999999999999999999 7999996 6699999999999986543

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.53  E-value=3.1e-08  Score=75.23  Aligned_cols=48  Identities=10%  Similarity=0.181  Sum_probs=42.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC----CcchhhhccCCCCCHHHHHHHHHHHH
Q 038795           62 KNGCKFSLEEERIVIELQAQFG----NKWARIATYLPGRTDNDVKNFWSSRQ  109 (302)
Q Consensus        62 k~~~~WT~EED~lLlelv~~~G----~kWs~IAk~LpgRT~nq~KnRw~~l~  109 (302)
                      .....||.+|+++|.+++..|+    ++|..||..++|||..+|+.||..++
T Consensus         6 ~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~   57 (73)
T 1wgx_A            6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP   57 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            3344799999999999999998    47999999999999999999998773

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.52  E-value=3.2e-08  Score=98.37  Aligned_cols=46  Identities=20%  Similarity=0.491  Sum_probs=42.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR  111 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr  111 (302)
                      .||.+|-.++++++.+||.+|..||+.++.||..|||++|..+.++
T Consensus       382 ~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr  427 (482)
T 2xag_B          382 RWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  427 (482)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999999999765544

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.43  E-value=4.1e-08  Score=71.54  Aligned_cols=49  Identities=22%  Similarity=0.429  Sum_probs=43.2

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCCCcccccccccCCCCccccccccccccC
Q 038795           10 KGPWKAEEDEVLINHVKKY--------GPRDWSSIRSKGLLQRTGKSCRLRWVNKLR   58 (302)
Q Consensus        10 KG~WT~EED~~L~~~V~~~--------G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~   58 (302)
                      |.+||+|||+.|++.|..|        |..-|..++...++++|..+||+||.++|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            6789999999999999999        544599997646999999999999999885

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.37  E-value=6.6e-08  Score=73.12  Aligned_cols=51  Identities=16%  Similarity=0.233  Sum_probs=43.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC---CCcccccccccCCCCccccccccccccCC
Q 038795            7 EIRKGPWKAEEDEVLINHVKKYGP---RDWSSIRSKGLLQRTGKSCRLRWVNKLRP   59 (302)
Q Consensus         7 ~lrKG~WT~EED~~L~~~V~~~G~---~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p   59 (302)
                      ...++.||.|||++|.+++.+|+.   .+|..||+. + ||+..+|+.||..+...
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~-l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHE-L-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH-H-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH-h-CCCHHHHHHHHHHHHHh
Confidence            356789999999999999999973   569999655 5 99999999999876543

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.22  E-value=1.7e-06  Score=68.02  Aligned_cols=50  Identities=14%  Similarity=0.280  Sum_probs=46.2

Q ss_pred             CCCHHHHHHHHHHHHHhCC---cchhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFGN---KWARIATYLPGRTDNDVKNFWSSRQKRLARI  115 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G~---kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r~  115 (302)
                      -||.|||+.||...++-|.   .|+.||+.|.+|+.+||++||+.+++-+.+.
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~   87 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA   87 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999986   7999999999999999999999999877653

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.21  E-value=3e-07  Score=83.27  Aligned_cols=49  Identities=24%  Similarity=0.442  Sum_probs=43.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccC
Q 038795            8 IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR   58 (302)
Q Consensus         8 lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~   58 (302)
                      ...++||.||++++++++.+|| ++|..|| +.+++||..||+.+|+++.+
T Consensus       131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IA-k~VgTKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYG-RDFQAIS-DVIGNKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHS-SCHHHHH-HHHSSCCHHHHHHHHHHTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHC-cCHHHHH-HHcCCCCHHHHHHHHHHHHH
Confidence            3467899999999999999999 8999995 56999999999999987764

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.17  E-value=4.2e-07  Score=68.98  Aligned_cols=50  Identities=16%  Similarity=0.341  Sum_probs=42.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC---CCcccccccccCCCCccccccccccccCC
Q 038795            9 RKGPWKAEEDEVLINHVKKYGP---RDWSSIRSKGLLQRTGKSCRLRWVNKLRP   59 (302)
Q Consensus         9 rKG~WT~EED~~L~~~V~~~G~---~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p   59 (302)
                      ..+.||.+|+++|.+++..|+.   .+|..||+ +|++|+..+|+.||..++.-
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~-~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAA-AVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH-HTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHH-HcCCCCHHHHHHHHHHHHhc
Confidence            3467999999999999999974   46999954 59999999999999887643

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.14  E-value=4.3e-06  Score=78.89  Aligned_cols=102  Identities=18%  Similarity=0.327  Sum_probs=80.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccccCCCCcccccc-------ccccc----------------------------
Q 038795           12 PWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRL-------RWVNK----------------------------   56 (302)
Q Consensus        12 ~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~-------Rw~~~----------------------------   56 (302)
                      .||..+...++.++.+||..+|..||+. |.|++...++.       ||...                            
T Consensus       112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA~e-v~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~  190 (304)
T 1ofc_X          112 AWTKRDFNQFIKANEKYGRDDIDNIAKD-VEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD  190 (304)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTS-STTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4999999999999999998899999655 88998887753       22100                            


Q ss_pred             ------------c--CCCCCCCCCCCHHHHHHHHHHHHHhC----Ccchhhh---c---------cCCCCCHHHHHHHHH
Q 038795           57 ------------L--RPNLKNGCKFSLEEERIVIELQAQFG----NKWARIA---T---------YLPGRTDNDVKNFWS  106 (302)
Q Consensus        57 ------------L--~p~lk~~~~WT~EED~lLlelv~~~G----~kWs~IA---k---------~LpgRT~nq~KnRw~  106 (302)
                                  |  .-..+++..||++||..|+-++.+||    +.|..|.   +         ++..||+.+|..|.+
T Consensus       191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~  270 (304)
T 1ofc_X          191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN  270 (304)
T ss_dssp             HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred             HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence                        0  00122455899999999999999999    4699995   2         557899999999999


Q ss_pred             HHHHHHHH
Q 038795          107 SRQKRLAR  114 (302)
Q Consensus       107 ~l~kr~~r  114 (302)
                      ++++-+.+
T Consensus       271 tLi~~iek  278 (304)
T 1ofc_X          271 TLITLIER  278 (304)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887654

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.13  E-value=1.9e-06  Score=62.67  Aligned_cols=44  Identities=14%  Similarity=0.300  Sum_probs=40.0

Q ss_pred             CCCHHHHHHHHHHHHHh--------CCc-chhhhc-cCCCCCHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQF--------GNK-WARIAT-YLPGRTDNDVKNFWSSRQ  109 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~--------G~k-Ws~IAk-~LpgRT~nq~KnRw~~l~  109 (302)
                      +||+|||.+|++.|.+|        |++ |..+|+ .++++|-.++|+||...+
T Consensus         4 ~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l   57 (59)
T 1fex_A            4 AFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence            79999999999999999        544 999999 799999999999997654

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.33  E-value=5.3e-07  Score=67.35  Aligned_cols=48  Identities=17%  Similarity=0.304  Sum_probs=43.7

Q ss_pred             CCCHHHHHHHHHHHHHhCC---cchhhhccCCCCCHHHHHHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFGN---KWARIATYLPGRTDNDVKNFWSSRQKRLAR  114 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G~---kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r  114 (302)
                      .||.|||+.|+...++-|.   .|+.||+.| +||.+||++||..+++-+.+
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf~k   66 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLFEK   66 (70)
Confidence            6999999999999999996   799999999 99999999999998875543

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.06  E-value=7.1e-06  Score=60.16  Aligned_cols=48  Identities=17%  Similarity=0.330  Sum_probs=43.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhc-cCCCCCHHHHHHHHHH
Q 038795           59 PNLKNGCKFSLEEERIVIELQAQFGNKWARIAT-YLPGRTDNDVKNFWSS  107 (302)
Q Consensus        59 p~lk~~~~WT~EED~lLlelv~~~G~kWs~IAk-~LpgRT~nq~KnRw~~  107 (302)
                      |.++.. .||++|-.+..+.+.+||.+|..|++ .|++||..+|...|..
T Consensus         5 p~~~~~-~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            5 SSGIEK-CWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCC-SCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCcCCC-CcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            556565 89999999999999999999999998 5899999999998854

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.94  E-value=2.1e-05  Score=62.18  Aligned_cols=62  Identities=16%  Similarity=0.223  Sum_probs=52.3

Q ss_pred             cccccccCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhccCC-----CCCHHHHHHHHHHHHHHHHHHhc
Q 038795           51 LRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYLP-----GRTDNDVKNFWSSRQKRLARILQ  117 (302)
Q Consensus        51 ~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~kWs~IAk~Lp-----gRT~nq~KnRw~~l~kr~~r~~~  117 (302)
                      +.|..+|..    . .||.||-..|++|+.+|+-+|..|+..+.     +||-.++|+||..+.+++.+...
T Consensus        22 eEY~~~L~~----~-~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~   88 (93)
T 4iej_A           22 QEYQLYLHD----D-AWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             HHHHHHTCB----T-TBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCC----C-CCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence            345566652    3 79999999999999999999999997763     79999999999999998877653

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.86  E-value=3.4e-06  Score=63.94  Aligned_cols=42  Identities=21%  Similarity=0.444  Sum_probs=38.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----cchhhhccCCCCCHHHHHHHHH
Q 038795           65 CKFSLEEERIVIELQAQFGN----KWARIATYLPGRTDNDVKNFWS  106 (302)
Q Consensus        65 ~~WT~EED~lLlelv~~~G~----kWs~IAk~LpgRT~nq~KnRw~  106 (302)
                      ..||.+|+++|..+..+|+.    +|.+||..+||||..+|+.+|.
T Consensus        21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            37999999999999999984    7999999999999999999884

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.76  E-value=5.6e-06  Score=62.76  Aligned_cols=44  Identities=16%  Similarity=0.288  Sum_probs=37.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC---CCcccccccccCCCCccccccccc
Q 038795           10 KGPWKAEEDEVLINHVKKYGP---RDWSSIRSKGLLQRTGKSCRLRWV   54 (302)
Q Consensus        10 KG~WT~EED~~L~~~V~~~G~---~nW~~Ias~~l~~Rt~~qCR~Rw~   54 (302)
                      .+.||.||+++|.+++..|+.   ..|.+||+ .|+||+..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~-~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQ-YVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGG-GSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-HcCCCCHHHHHHHHH
Confidence            457999999999999999974   37999965 599999999999985

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.69  E-value=3.4e-05  Score=60.91  Aligned_cols=44  Identities=18%  Similarity=0.206  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHH
Q 038795           65 CKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSR  108 (302)
Q Consensus        65 ~~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l  108 (302)
                      ..||++|.++..+...+||++|..||..|++||..+|-.+|...
T Consensus        44 ~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           44 NMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             CCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence            37999999999999999999999999999999999999988654

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.64  E-value=7.1e-05  Score=55.95  Aligned_cols=43  Identities=16%  Similarity=0.373  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCcchhhhc-cCCCCCHHHHHHHHHH
Q 038795           65 CKFSLEEERIVIELQAQFGNKWARIAT-YLPGRTDNDVKNFWSS  107 (302)
Q Consensus        65 ~~WT~EED~lLlelv~~~G~kWs~IAk-~LpgRT~nq~KnRw~~  107 (302)
                      ..||++|-.+..+.+.+||.+|..|++ .|++||..+|..+|..
T Consensus         9 ~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            9 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            379999999999999999999999999 5999999999999864

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.62  E-value=2.8e-05  Score=56.94  Aligned_cols=50  Identities=14%  Similarity=0.259  Sum_probs=43.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCcccccccccc
Q 038795            5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN   55 (302)
Q Consensus         5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~   55 (302)
                      ++.+....||+||-++..+++.+|| ++|..|+...+++|+..+|..-|..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            4667788999999999999999999 7999995435899999999987753

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=97.36  E-value=0.00028  Score=62.05  Aligned_cols=105  Identities=17%  Similarity=0.242  Sum_probs=71.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--CCCcccccccc-cCCCCccccccc-------ccc------------------------
Q 038795           10 KGPWKAEEDEVLINHVKKYG--PRDWSSIRSKG-LLQRTGKSCRLR-------WVN------------------------   55 (302)
Q Consensus        10 KG~WT~EED~~L~~~V~~~G--~~nW~~Ias~~-l~~Rt~~qCR~R-------w~~------------------------   55 (302)
                      ...||..|-..|+.++.+||  ...|..|+..+ +.+|+...++.-       +..                        
T Consensus         7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (211)
T 4b4c_A            7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGPTF   86 (211)
T ss_dssp             -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CCEE
T ss_pred             CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccchhh
Confidence            34599999999999999999  56899996422 456655543320       000                        


Q ss_pred             --------------------ccC---------------C----CCCCCCCCCHHHHHHHHHHHHHhC-Ccchhhhc--cC
Q 038795           56 --------------------KLR---------------P----NLKNGCKFSLEEERIVIELQAQFG-NKWARIAT--YL   93 (302)
Q Consensus        56 --------------------~L~---------------p----~lk~~~~WT~EED~lLlelv~~~G-~kWs~IAk--~L   93 (302)
                                          .|+               +    ....++.||.+||..|+-.+.+|| ++|..|-.  .|
T Consensus        87 ~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l  166 (211)
T 4b4c_A           87 RISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDL  166 (211)
T ss_dssp             EETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSS
T ss_pred             hhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhChhc
Confidence                                000               0    011124699999999999999999 99999942  11


Q ss_pred             ------------CCCCHHHHHHHHHHHHHHHHH
Q 038795           94 ------------PGRTDNDVKNFWSSRQKRLAR  114 (302)
Q Consensus        94 ------------pgRT~nq~KnRw~~l~kr~~r  114 (302)
                                  ..+++..+..|...+++-+.+
T Consensus       167 ~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l~~  199 (211)
T 4b4c_A          167 SLTHKILPDDPDKKPQAKQLQTRADYLIKLLSR  199 (211)
T ss_dssp             SCTTTSSCSSTTSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CccccccccccccCCChHHHHHHHHHHHHHHHH
Confidence                        235677899999888876544

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.28  E-value=0.00019  Score=54.98  Aligned_cols=51  Identities=16%  Similarity=0.363  Sum_probs=41.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----------cchhhhccC----CCCCHHHHHHHHHHHHHHHHH
Q 038795           64 GCKFSLEEERIVIELQAQFGN----------KWARIATYL----PGRTDNDVKNFWSSRQKRLAR  114 (302)
Q Consensus        64 ~~~WT~EED~lLlelv~~~G~----------kWs~IAk~L----pgRT~nq~KnRw~~l~kr~~r  114 (302)
                      +..||.+|-.+||+++..+..          .|..||..|    -.||+.||+++|+++.+...+
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~   68 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKK   68 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            347999999999999876321          499999875    379999999999999887644

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.24  E-value=7.6e-05  Score=74.28  Aligned_cols=47  Identities=23%  Similarity=0.442  Sum_probs=41.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCcccccccccccc
Q 038795            9 RKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKL   57 (302)
Q Consensus         9 rKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L   57 (302)
                      ...+||.||-+++++++.+|| ++|..|+ .++.+|+..||+..|.++-
T Consensus       379 ~~~~WT~eE~~~f~~al~~yG-kdw~~IA-~~VgTKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          379 CNARWTTEEQLLAVQAIRKYG-RDFQAIS-DVIGNKSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHT-TCHHHHH-HHHSSCCHHHHHHHHHHTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHC-cCHHHHH-HHhCCCCHHHHHHHHHHHH
Confidence            467899999999999999999 7999995 5699999999999987543

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.24  E-value=6.9e-05  Score=59.27  Aligned_cols=50  Identities=12%  Similarity=0.291  Sum_probs=42.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccccccc----CCCCccccccccccccC
Q 038795            8 IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGL----LQRTGKSCRLRWVNKLR   58 (302)
Q Consensus         8 lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l----~~Rt~~qCR~Rw~~~L~   58 (302)
                      |..++||.||+..|++++++|| .+|..|+...-    ++||..++++||....+
T Consensus        28 L~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~   81 (93)
T 3hm5_A           28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence            4558999999999999999999 77999976631    58999999999987554

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.97  E-value=0.0016  Score=62.92  Aligned_cols=104  Identities=21%  Similarity=0.325  Sum_probs=78.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccccC-CCCcccccc-------cccc------c--------------------
Q 038795           11 GPWKAEEDEVLINHVKKYGPRDWSSIRSKGLL-QRTGKSCRL-------RWVN------K--------------------   56 (302)
Q Consensus        11 G~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~-~Rt~~qCR~-------Rw~~------~--------------------   56 (302)
                      +-||.-+=..++.++.+||..+-..||.. |. +++...++.       ||..      +                    
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~e-v~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~  202 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARE-LAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA  202 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSS-CCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHH-HccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35999999999999999998889999665 65 788777662       2211      0                    


Q ss_pred             --------------cC----CCCCCCCCCCHHHHHHHHHHHHHhC----Ccchhhhc------------cCCCCCHHHHH
Q 038795           57 --------------LR----PNLKNGCKFSLEEERIVIELQAQFG----NKWARIAT------------YLPGRTDNDVK  102 (302)
Q Consensus        57 --------------L~----p~lk~~~~WT~EED~lLlelv~~~G----~kWs~IAk------------~LpgRT~nq~K  102 (302)
                                    |.    ++-.++..||++||..||-++.+||    +.|..|-.            +|..||+..|.
T Consensus       203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~  282 (374)
T 2y9y_A          203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA  282 (374)
T ss_dssp             HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred             HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence                          00    1111445799999999999999999    56999932            25779999999


Q ss_pred             HHHHHHHHHHHHH
Q 038795          103 NFWSSRQKRLARI  115 (302)
Q Consensus       103 nRw~~l~kr~~r~  115 (302)
                      .|.+.|++-+.+-
T Consensus       283 rRc~tLi~~IeKE  295 (374)
T 2y9y_A          283 RRGNTLLQCLEKE  295 (374)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887664

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.94  E-value=0.00055  Score=51.05  Aligned_cols=46  Identities=24%  Similarity=0.333  Sum_probs=39.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCcccccccccc
Q 038795            9 RKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN   55 (302)
Q Consensus         9 rKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~   55 (302)
                      ....||+||-++..+++.+|| ++|..|+...+++|+..+|..-|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            345799999999999999999 7999995425999999999987753

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.79  E-value=0.00046  Score=54.36  Aligned_cols=43  Identities=19%  Similarity=0.327  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccc
Q 038795           10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWV   54 (302)
Q Consensus        10 KG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~   54 (302)
                      ...||+||-++..+++..|| ++|..|+ ..+++|+..+|-..|.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia-~~l~~Kt~~~cV~~YY   85 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIA-SFLERKTVAECVLYYY   85 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHH-HTCTTCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHH-HHcCCCCHHHHHHHHh
Confidence            35699999999999999999 8899995 5699999999998764

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.71  E-value=0.00027  Score=52.76  Aligned_cols=46  Identities=20%  Similarity=0.483  Sum_probs=39.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--CCcccccccccCCCCccccccccccccC
Q 038795           11 GPWKAEEDEVLINHVKKYGP--RDWSSIRSKGLLQRTGKSCRLRWVNKLR   58 (302)
Q Consensus        11 G~WT~EED~~L~~~V~~~G~--~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~   58 (302)
                      -.||.|||..|+..+++.|.  ..|..||.+ + +|++.|+.+||+..+.
T Consensus        15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~-L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAK-L-DKNPNQVSERFQQLMK   62 (70)
Confidence            45999999999999999985  369999654 5 9999999999988764

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.17  E-value=0.00043  Score=53.01  Aligned_cols=49  Identities=29%  Similarity=0.510  Sum_probs=37.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC------CC---Cccccccc---ccCCCCcccccccccccc
Q 038795            9 RKGPWKAEEDEVLINHVKKYG------PR---DWSSIRSK---GLLQRTGKSCRLRWVNKL   57 (302)
Q Consensus         9 rKG~WT~EED~~L~~~V~~~G------~~---nW~~Ias~---~l~~Rt~~qCR~Rw~~~L   57 (302)
                      |...||.+|-..|+++.....      ..   -|..||..   .+-.|++.||+.+|.+..
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            567899999999999997631      11   49999644   234799999999998765

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=95.92  E-value=0.0024  Score=50.17  Aligned_cols=48  Identities=21%  Similarity=0.369  Sum_probs=40.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC--CCcccccccccCCCCcccccccccccc
Q 038795            9 RKGPWKAEEDEVLINHVKKYGP--RDWSSIRSKGLLQRTGKSCRLRWVNKL   57 (302)
Q Consensus         9 rKG~WT~EED~~L~~~V~~~G~--~nW~~Ias~~l~~Rt~~qCR~Rw~~~L   57 (302)
                      .=-.||.|||..|+...++.|.  ..|..||.+ +.+|+..|+++|++..+
T Consensus        32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~-L~Nks~nqV~~RFq~Lm   81 (95)
T 1ug2_A           32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQ-LGNKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHH-HSSCCHHHHHHHHHHHH
T ss_pred             EEEEeccccCHHHHHHHHhcCCChhHHHHHHHH-HccCCHHHHHHHHHHHH
Confidence            3346999999999999999985  479999654 77899999999997654

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=94.78  E-value=0.059  Score=39.62  Aligned_cols=47  Identities=13%  Similarity=0.121  Sum_probs=40.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCc---chhhhccC--CCCCHHHHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFGNK---WARIATYL--PGRTDNDVKNFWSSRQKRL  112 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G~k---Ws~IAk~L--pgRT~nq~KnRw~~l~kr~  112 (302)
                      .||.|..+..++++.++|..   ++.|.+.|  +|.|..+|+.|...+..++
T Consensus         9 ~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l   60 (64)
T 1irz_A            9 LWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL   60 (64)
T ss_dssp             SSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence            79999999999999999965   78888775  7999999999987665444

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=94.14  E-value=0.017  Score=45.46  Aligned_cols=50  Identities=12%  Similarity=0.291  Sum_probs=41.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccccccc----CCCCccccccccccccC
Q 038795            8 IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGL----LQRTGKSCRLRWVNKLR   58 (302)
Q Consensus         8 lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l----~~Rt~~qCR~Rw~~~L~   58 (302)
                      ++...||.||...|++++++|+ -.|.-|+.+..    ..|+..+.++||....+
T Consensus        28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~   81 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence            4557899999999999999999 67999976632    47899999999876543

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=92.20  E-value=0.21  Score=46.93  Aligned_cols=46  Identities=17%  Similarity=0.297  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHHHHHHhCC-cchhhhccCCCCCHHHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFGN-KWARIATYLPGRTDNDVKNFWSSRQKR  111 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G~-kWs~IAk~LpgRT~nq~KnRw~~l~kr  111 (302)
                      .||..+...++.+..+||. +|..||..++|+|..+|+.++.....+
T Consensus       112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r  158 (304)
T 1ofc_X          112 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER  158 (304)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            6999999999999999995 799999999999999999887654443

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=92.10  E-value=0.2  Score=43.66  Aligned_cols=51  Identities=24%  Similarity=0.308  Sum_probs=44.3

Q ss_pred             CCCHHHHHHHHHHHHHhC---Ccchhhhc--cCCCCCHHHHHHHHHHHHHHHHHHh
Q 038795           66 KFSLEEERIVIELQAQFG---NKWARIAT--YLPGRTDNDVKNFWSSRQKRLARIL  116 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G---~kWs~IAk--~LpgRT~nq~KnRw~~l~kr~~r~~  116 (302)
                      .||..|-..|+.++.+||   .+|..|+.  .|.++|..+|+.++..++.+..+..
T Consensus         9 ~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~   64 (211)
T 4b4c_A            9 GFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKAL   64 (211)
T ss_dssp             CSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999999   57999985  4889999999999888877765543

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=91.19  E-value=0.1  Score=48.32  Aligned_cols=27  Identities=48%  Similarity=0.845  Sum_probs=25.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccc
Q 038795           11 GPWKAEEDEVLINHVKKYGPRDWSSIR   37 (302)
Q Consensus        11 G~WT~EED~~L~~~V~~~G~~nW~~Ia   37 (302)
                      ..|+.+||..|+..|.+||.++|..|.
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir  195 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIR  195 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHh
Confidence            459999999999999999999999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	302
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-17
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-06
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-16
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	4e-07
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	5e-15
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	8e-14
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	0.002
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	2e-13
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	3e-04
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	2e-13
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	1e-06
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	3e-12
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	5e-08
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	4e-11
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	7e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	5e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-07
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	2e-10
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	8e-09
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	3e-10
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	1e-05
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	2e-08
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	1e-07
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	3e-07
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	1e-05
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	2e-05

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.8 bits (179), Expect = 2e-17
 Identities = 29/52 (55%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 8  IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP 59
          + KGPW  EED+ LI  V+KYGP+ WS I +K L  R GK CR RW N L P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNP 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.2 bits (97), Expect = 3e-06
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 61  LKNGCKFSLEEERIVIELQAQFG-NKWARIATYLPGRTDNDVKNFW 105
           L  G  ++ EE++ +I+L  ++G  +W+ IA +L GR     +  W
Sbjct: 1   LIKG-PWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW 45

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.4 bits (170), Expect = 3e-16
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP 59
          K  W  EEDE L   V++ G  DW  I +  L  RT   C+ RW   L P
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVI-ANYLPNRTDVQCQHRWQKVLNP 49

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (103), Expect = 4e-07
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 66  KFSLEEERIVIELQAQFG-NKWARIATYLPGRTDNDVKNFW 105
           +++ EE+  + +L  Q G + W  IA YLP RTD   ++ W
Sbjct: 3   RWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW 43

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 67.0 bits (163), Expect = 5e-15
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 12 PWKAEEDEVLINHVKKYGPRDWSSIR---SKGLLQRTGKSCRLRWVNKLR-----PNLKN 63
          P+   E E L+  V+  G   W  ++         RT    + +W   +      P  + 
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 64 GCKFSLEEERIVIELQAQFGNK 85
          G     +    V+   A +  +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (152), Expect = 8e-14
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 9  RKGPWKAEEDEVLINHVKKYGPRDWSSI-RSKGLLQRTGKSCRLRWVNKLR 58
          ++  W  EED+ L + V+KYG  +WS I        RT    + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (76), Expect = 0.002
 Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 66  KFSLEEERIVIELQAQFGNK-WARIATYLP--GRTDNDVKNFWSSRQK 110
            +  EE++ +     ++G   W++I  +     RT   +K+ W + +K
Sbjct: 4   AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (150), Expect = 2e-13
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 9  RKGPWKAEEDEVLINHVKKYGPRDWSSIRSK-GLLQRTGKSCRLRWVNKLRPNL 61
          +K  W  EE E +   V+KYG  +W++I      + RT    + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 3e-04
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 66  KFSLEEERIVIELQAQFGNK-WARIATY--LPGRTDNDVKNFWSSRQKR 111
           K+++EE   V     ++G   WA I+       RT   +K+ W + ++ 
Sbjct: 4   KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL 52

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.7 bits (152), Expect = 2e-13
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 10 KGPWKAEEDEVLINHVKKYGPR-----DWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNG 64
          K  +  EEDE +++ V+K   R      +  I S  +   TG S R R+   L   L+  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEI-SHYVPNHTGNSIRHRFRVYLSKRLEYV 59

Query: 65 CKFSLEEERIVIELQAQFGN 84
               +  ++V +       
Sbjct: 60 -YEVDKFGKLVRDDDGNLIK 78

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (103), Expect = 1e-06
 Identities = 10/67 (14%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 66  KFSLEEERIVIELQAQFGNK------WARIATYLPGRTDNDVKNFWSSRQKRLARILQNS 119
            F+ EE+  ++++  +   +      +  I+ Y+P  T N +++ +      L++ L+  
Sbjct: 3   SFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRV---YLSKRLEYV 59

Query: 120 ATTSSSN 126
                  
Sbjct: 60  YEVDKFG 66

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (142), Expect = 3e-12
 Identities = 9/51 (17%), Positives = 21/51 (41%)

Query: 62  KNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRL 112
           +    +S +E+    E   Q    +  IA++L  +T  +   ++   +K  
Sbjct: 15  QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNE 65

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 5e-08
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 1  MEGKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN-KLRP 59
          M+  ++      W  +E E       ++  +++  I +  L ++T   C L +   K   
Sbjct: 8  MKVYKDRQVMNMWSEQEKETFREKFMQHP-KNFGLI-ASFLERKTVAECVLYYYLTKKNE 65

Query: 60 NLK 62
          N K
Sbjct: 66 NYK 68

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.2 bits (133), Expect = 4e-11
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR 58
          K  W  EED ++    K+ G R W+ I +K L  RT  + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGNR-WAEI-AKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.4 bits (131), Expect = 7e-11
 Identities = 21/45 (46%), Positives = 31/45 (68%)

Query: 66  KFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQK 110
            ++ EE+RI+ +   + GN+WA IA  LPGRTDN +KN W+S  +
Sbjct: 3   SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (133), Expect = 5e-11
 Identities = 10/51 (19%), Positives = 28/51 (54%)

Query: 62  KNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRL 112
           K   +++ EE+ + ++   ++G  +  I+  +  ++   VKNF+ + ++R 
Sbjct: 3   KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 53

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (107), Expect = 2e-07
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN-KLRPNLKN 63
             W  EE  + +  ++KYG  D+ +I S  +  ++    +  +VN + R N+  
Sbjct: 5  NARWTTEEQLLAVQAIRKYGR-DFQAI-SDVIGNKSVVQVKNFFVNYRRRFNIDE 57

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 2e-10
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSL 69
             W  EE E+    + K+  R W+ I SK +  RT    +       +  +K G     
Sbjct: 2  SVKWTIEEKELFEQGLAKF-GRRWTKI-SKLIGSRTVLQVKSYARQYFKNKVKCGLDKET 59

Query: 70 EEER 73
            ++
Sbjct: 60 PNQK 63

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (117), Expect = 8e-09
 Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 66  KFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQNSATTSSS 125
           K+++EE+ +  +  A+FG +W +I+  +  RT   VK++    ++     ++      + 
Sbjct: 4   KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYA---RQYFKNKVKCGLDKETP 60

Query: 126 NSKS 129
           N K+
Sbjct: 61  NQKT 64

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (127), Expect = 3e-10
 Identities = 9/53 (16%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 4  KREEIRKGPWKAEEDEVLINHVKKYG---PRDWSSIRSKGLLQRTGKSCRLRW 53
          +R    + PW   + ++L   +++Y       W  I ++ +  ++ + C  R+
Sbjct: 6  ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKI-ARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 1e-05
 Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 56  KLRPNLKNGCKFSLEEERIVIELQAQFG----NKWARIATYLPGRTDNDVKNFW 105
           K R        ++  +++++     Q+     + W +IA  +P ++  D    +
Sbjct: 5   KERARSAEE-PWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (112), Expect = 2e-08
 Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 13 WKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 55
          W A+E+  L+  V   G  +W  + +  +  +T + C   ++ 
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDV-ANQMCTKTKEECEKHYMK 45

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 45.7 bits (108), Expect = 1e-07
 Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 12 PWKAEEDEVLINHVKKYGPRDWSSIR--SKGLLQRTGKSCRLRWVNKLRPNLKN 63
          PW A+E++     +  Y           ++ +  RT +  +  +   L  ++K 
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 44.5 bits (105), Expect = 3e-07
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 64  GCKFSLEEERIVIELQAQFG----NKWARIATYLPGRTDNDVKNFWSSRQKRLARI 115
           G  +S +E +      A +     ++WA +A  + GRT  +VK  +    + +  I
Sbjct: 1   GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYI 56

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 10/60 (16%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 70  EEERIVIELQAQFGNK---WARIATYLPGRTDNDVKNFWSSRQKRLARILQNSATTSSSN 126
           E +R+++ +  + G +   ++ I+  L  +T  +V +    R + L ++   +  +  S+
Sbjct: 39  EADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSH----RFRELMQLFHTACESGPSS 94

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.3 bits (94), Expect = 2e-05
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 9  RKGPWKAEEDEVLINHVKKYGPRD--WSSIRSKGLLQRTGKSCRLRW 53
          +   W  E D V++   ++ G +   +S I S+ L  +T      R+
Sbjct: 32 KVVLWTREADRVILTMCQEQGAQPHTFSVI-SQQLGNKTPVEVSHRF 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	302
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.7
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.68
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.66
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.63
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.57
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.56
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.51
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.51
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.47
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.46
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.43
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.41
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.4
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.38
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.36
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.35
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.33
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.33
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.3
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.27
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.2
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.17
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.14
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.09
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.06
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.94
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.86
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.72
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.19
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.09
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.79
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.38
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.09
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.07
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	97.04
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.17
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	95.55
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	93.41
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	93.23
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	92.8
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	92.32
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	90.88

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2.3e-18  Score=121.26  Aligned_cols=52  Identities=56%  Similarity=1.062  Sum_probs=48.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCC
Q 038795            8 IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN   60 (302)
Q Consensus         8 lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~   60 (302)
                      |.||+||+|||++|+++|.+||.++|..|| +.|++||+.||++||.++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHH-HHHCCCCHHHHHHHHHhhCCCC
Confidence            579999999999999999999988999995 5599999999999999999984

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=9.6e-20  Score=141.05  Aligned_cols=69  Identities=25%  Similarity=0.262  Sum_probs=62.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-----CcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHH
Q 038795           10 KGPWKAEEDEVLINHVKKYGPR-----DWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQA   80 (302)
Q Consensus        10 KG~WT~EED~~L~~~V~~~G~~-----nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~   80 (302)
                      ||.||+|||++|+++|.+||..     +|..|| +.|+|||++|||+||.++|+|.++++ .||.+||.+|++++.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA-~~lpgRt~~qcr~Rw~~~L~p~l~~~-~~t~~ed~ll~d~~~   74 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS-HYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRDDDG   74 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT-TTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBCTTS
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHH-HHcCCCCHHHHHHHHHHHcCccccCC-CCCCchhHHHHHHhh
Confidence            6899999999999999999964     399995 55999999999999999999999998 899999999987653

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=3.1e-17  Score=113.23  Aligned_cols=45  Identities=47%  Similarity=0.942  Sum_probs=43.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQK  110 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~k  110 (302)
                      +||.|||++|+++|.+||++|+.||++|||||+++|||||+.++|
T Consensus         3 ~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           3 SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            899999999999999999999999999999999999999998764

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=2.3e-17  Score=115.11  Aligned_cols=50  Identities=40%  Similarity=0.717  Sum_probs=46.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCC
Q 038795           10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN   60 (302)
Q Consensus        10 KG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~   60 (302)
                      |++||+|||++|+++|.+||.++|..||. .|+||++.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHH-TSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHH-HHCCCCHHHHHHHHHhhCCCC
Confidence            68899999999999999999889999955 599999999999999999984

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1e-15  Score=107.47  Aligned_cols=48  Identities=29%  Similarity=0.657  Sum_probs=44.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CcchhhhccCCCCCHHHHHHHHHHHH
Q 038795           61 LKNGCKFSLEEERIVIELQAQFG-NKWARIATYLPGRTDNDVKNFWSSRQ  109 (302)
Q Consensus        61 lk~~~~WT~EED~lLlelv~~~G-~kWs~IAk~LpgRT~nq~KnRw~~l~  109 (302)
                      |.+| +||.|||++|+++|.+|| ++|+.||++|+|||+.||++||+.++
T Consensus         1 l~rg-~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L   49 (52)
T d1gvda_           1 LIKG-PWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL   49 (52)
T ss_dssp             CCCC-SCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred             CCCC-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhC
Confidence            4578 899999999999999999 68999999999999999999998764

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.56  E-value=3e-16  Score=120.15  Aligned_cols=73  Identities=18%  Similarity=0.433  Sum_probs=59.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccc---ccCCCCccccccccccccC-----CCCCCCCCCCHHHHHHHHHHHHHhC
Q 038795           12 PWKAEEDEVLINHVKKYGPRDWSSIRSK---GLLQRTGKSCRLRWVNKLR-----PNLKNGCKFSLEEERIVIELQAQFG   83 (302)
Q Consensus        12 ~WT~EED~~L~~~V~~~G~~nW~~Ias~---~l~~Rt~~qCR~Rw~~~L~-----p~lk~~~~WT~EED~lLlelv~~~G   83 (302)
                      +||.|||++|+.+|.+||.++|..|+..   .+++||+.||++||.++|+     +..+++ .|+++|   |+..|..++
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~-~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG-EPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCS-SCCCHH---HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccC-CCCCHH---HHHHHHHHH
Confidence            6999999999999999999999999643   2689999999999999984     667777 788766   444455556


Q ss_pred             Ccchh
Q 038795           84 NKWAR   88 (302)
Q Consensus        84 ~kWs~   88 (302)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            67764

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=9.3e-15  Score=101.60  Aligned_cols=44  Identities=34%  Similarity=0.649  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHHHHHhC-CcchhhhccCCCCCHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFG-NKWARIATYLPGRTDNDVKNFWSSRQ  109 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G-~kWs~IAk~LpgRT~nq~KnRw~~l~  109 (302)
                      .||.+||++|+++|.+|| ++|..||++|+|||+.||++||++++
T Consensus         3 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L   47 (50)
T d1guua_           3 RWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL   47 (50)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhC
Confidence            799999999999999999 68999999999999999999999876

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.6e-15  Score=107.57  Aligned_cols=53  Identities=30%  Similarity=0.579  Sum_probs=47.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcccccccc-cCCCCccccccccccccCCCC
Q 038795            9 RKGPWKAEEDEVLINHVKKYGPRDWSSIRSKG-LLQRTGKSCRLRWVNKLRPNL   61 (302)
Q Consensus         9 rKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~-l~~Rt~~qCR~Rw~~~L~p~l   61 (302)
                      +|++||+|||++|+.+|++||.++|..|+... +.+|++.||++||.+++++.+
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~   54 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   54 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCC
Confidence            57899999999999999999988999996542 569999999999999998876

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5e-15  Score=103.89  Aligned_cols=50  Identities=32%  Similarity=0.537  Sum_probs=44.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcccccccc-cCCCCccccccccccccC
Q 038795            9 RKGPWKAEEDEVLINHVKKYGPRDWSSIRSKG-LLQRTGKSCRLRWVNKLR   58 (302)
Q Consensus         9 rKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~-l~~Rt~~qCR~Rw~~~L~   58 (302)
                      +|++||+|||++|+++|.+||.++|..|+... +.+|++.||++||.++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            57899999999999999999998999996442 459999999999988653

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=7.5e-15  Score=101.07  Aligned_cols=47  Identities=32%  Similarity=0.653  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccC
Q 038795           10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR   58 (302)
Q Consensus        10 KG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~   58 (302)
                      |++||+|||++|+++|++|| .+|..|| +.|+|||+.||+.||.++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G-~~W~~Ia-~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLG-NRWAEIA-KLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHS-SCHHHHH-TTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHh-hHHHHHH-hHcCCCCHHHHHHHHHHHcC
Confidence            68999999999999999999 5799995 56999999999999998874

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.7e-14  Score=98.04  Aligned_cols=47  Identities=21%  Similarity=0.418  Sum_probs=42.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CcchhhhccC--CCCCHHHHHHHHHHHHH
Q 038795           63 NGCKFSLEEERIVIELQAQFG-NKWARIATYL--PGRTDNDVKNFWSSRQK  110 (302)
Q Consensus        63 ~~~~WT~EED~lLlelv~~~G-~kWs~IAk~L--pgRT~nq~KnRw~~l~k  110 (302)
                      ++ +||+|||++|+++|.+|| ++|+.||+.+  .|||+.||++||+++.|
T Consensus         2 r~-~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           2 RQ-AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CC-CCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CC-CCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            55 899999999999999999 5999999875  59999999999988754

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=8.2e-14  Score=101.14  Aligned_cols=48  Identities=27%  Similarity=0.479  Sum_probs=45.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLA  113 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~  113 (302)
                      .||.|||.+|++++.+||++|..||++|++||+.||++||+.++++..
T Consensus         4 ~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~   51 (65)
T d2cu7a1           4 KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV   51 (65)
T ss_dssp             CCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999999999999999998877653

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.6e-13  Score=97.09  Aligned_cols=47  Identities=26%  Similarity=0.504  Sum_probs=42.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-Ccchhhhcc--CCCCCHHHHHHHHHHHHH
Q 038795           63 NGCKFSLEEERIVIELQAQFG-NKWARIATY--LPGRTDNDVKNFWSSRQK  110 (302)
Q Consensus        63 ~~~~WT~EED~lLlelv~~~G-~kWs~IAk~--LpgRT~nq~KnRw~~l~k  110 (302)
                      ++ +||.|||++|+++|.+|| ++|+.||+.  |++||+.||++||+++++
T Consensus         2 r~-~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_           2 KQ-KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR   51 (55)
T ss_dssp             CC-CCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CC-CCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhc
Confidence            45 899999999999999999 689999987  579999999999998775

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.1e-14  Score=97.82  Aligned_cols=44  Identities=20%  Similarity=0.569  Sum_probs=40.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccc
Q 038795           12 PWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNK   56 (302)
Q Consensus        12 ~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~   56 (302)
                      .||.|||++|+++|++||.++|..||. .|++||+.|||.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~-~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVAN-QMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHH-HHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHH-HcCCCCHHHHHHHHHHh
Confidence            599999999999999999999999964 59999999999999876

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.36  E-value=5.5e-13  Score=96.57  Aligned_cols=51  Identities=24%  Similarity=0.417  Sum_probs=46.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----cchhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 038795           65 CKFSLEEERIVIELQAQFGN----KWARIATYLPGRTDNDVKNFWSSRQKRLARI  115 (302)
Q Consensus        65 ~~WT~EED~lLlelv~~~G~----kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r~  115 (302)
                      .+||.|||.+|++++.+||.    +|.+||.+|+|||++||++||+.+++.+++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~dik~i   56 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYI   56 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcc
Confidence            47999999999999999995    5999999999999999999999888776654

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.1e-13  Score=92.72  Aligned_cols=43  Identities=16%  Similarity=0.404  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHHHHHHhC-CcchhhhccCCCCCHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFG-NKWARIATYLPGRTDNDVKNFWSSR  108 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G-~kWs~IAk~LpgRT~nq~KnRw~~l  108 (302)
                      .||.+||.+|+++|++|| ++|..||++|++||+.||++||..+
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 6899999999999999999999864

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=1.4e-12  Score=101.74  Aligned_cols=75  Identities=12%  Similarity=0.147  Sum_probs=65.9

Q ss_pred             ccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCCc---chhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 038795           40 GLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNK---WARIATYLPGRTDNDVKNFWSSRQKRLARI  115 (302)
Q Consensus        40 ~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~k---Ws~IAk~LpgRT~nq~KnRw~~l~kr~~r~  115 (302)
                      .++..+..+++-++.+..+...+.. .||.|||++||+.++++|.+   |..||+.|+|||++||++||+.+++.+...
T Consensus        10 ~~p~~t~~~v~A~n~~~~s~G~~~~-~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~~~   87 (95)
T d1ug2a_          10 ALPKASEATVCANNSKVSSTGEKVV-LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA   87 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCCS-SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCccccccccCccCCCCCccC-CcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            4677888888888888777766555 79999999999999999977   999999999999999999999999887653

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=2.7e-13  Score=104.31  Aligned_cols=47  Identities=17%  Similarity=0.439  Sum_probs=43.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCc------chhhhccCCCCCHHHHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFGNK------WARIATYLPGRTDNDVKNFWSSRQKRL  112 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G~k------Ws~IAk~LpgRT~nq~KnRw~~l~kr~  112 (302)
                      .||.|||++|+++|.+||.+      |+.||++|||||++|||+||+.++...
T Consensus         3 ~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~   55 (86)
T d1igna1           3 SFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR   55 (86)
T ss_dssp             CCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGG
T ss_pred             CCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCcc
Confidence            79999999999999999964      999999999999999999999987643

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.6e-12  Score=93.08  Aligned_cols=49  Identities=12%  Similarity=0.305  Sum_probs=43.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC----cchhhhccCCCCCHHHHHHHHHHH
Q 038795           59 PNLKNGCKFSLEEERIVIELQAQFGN----KWARIATYLPGRTDNDVKNFWSSR  108 (302)
Q Consensus        59 p~lk~~~~WT~EED~lLlelv~~~G~----kWs~IAk~LpgRT~nq~KnRw~~l  108 (302)
                      +...++ +||.+||.+|++++.+||.    +|..||.+|+|||+.||++||+.+
T Consensus         8 ~~~~~~-~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           8 ARSAEE-PWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTCSSC-CCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             CCcCCC-CcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            445566 8999999999999999995    599999999999999999999764

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=7.4e-13  Score=94.90  Aligned_cols=52  Identities=17%  Similarity=0.451  Sum_probs=45.9

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCC---CcccccccccCCCCcccccccccc
Q 038795            3 GKREEIRKGPWKAEEDEVLINHVKKYGPR---DWSSIRSKGLLQRTGKSCRLRWVN   55 (302)
Q Consensus         3 ~kK~~lrKG~WT~EED~~L~~~V~~~G~~---nW~~Ias~~l~~Rt~~qCR~Rw~~   55 (302)
                      .+++...+++||+|||++|+++|..||..   +|..|| ..|+|||+.||+.||..
T Consensus         5 ~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA-~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1           5 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIA-RCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHG-GGCSSSCHHHHHHHHHH
T ss_pred             cccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHH-HHcCCCCHHHHHHHHHH
Confidence            45667889999999999999999999965   499995 56999999999999964

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=9.3e-13  Score=95.43  Aligned_cols=52  Identities=27%  Similarity=0.432  Sum_probs=46.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCC
Q 038795           11 GPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNG   64 (302)
Q Consensus        11 G~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~   64 (302)
                      +.||+|||++|+++|..|| .+|..|| ..|++||..||+.||.+++++..+.+
T Consensus         3 ~~WT~eEd~~l~~~~~~~G-~~W~~Ia-~~~~~Rt~~q~k~ry~~~~~~~~k~~   54 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFG-RRWTKIS-KLIGSRTVLQVKSYARQYFKNKVKCG   54 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTC-SCHHHHH-HHHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred             CCCCHHHHHHHHHHHHHhc-chHHHHH-HHcCCCCHHHHHHHHHHHHHHHHhcC
Confidence            5699999999999999999 7999995 56999999999999999988766555

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.17  E-value=2.1e-11  Score=92.66  Aligned_cols=47  Identities=23%  Similarity=0.446  Sum_probs=43.2

Q ss_pred             CCCHHHHHHHHHHHHHhC-Ccchhhhcc----CCCCCHHHHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFG-NKWARIATY----LPGRTDNDVKNFWSSRQKRL  112 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G-~kWs~IAk~----LpgRT~nq~KnRw~~l~kr~  112 (302)
                      +||.|||++|+++|.+|| ++|+.|++.    +++||+.|||+||+++++..
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~   53 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhh
Confidence            799999999999999999 589999974    68999999999999998754

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1e-11  Score=90.03  Aligned_cols=46  Identities=20%  Similarity=0.491  Sum_probs=43.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR  111 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr  111 (302)
                      .||++|+.+|++++.+||.+|..||++|+|||..||++||+.+.++
T Consensus         7 ~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           7 RWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             SCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            7999999999999999999999999999999999999999887654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.7e-11  Score=89.66  Aligned_cols=44  Identities=18%  Similarity=0.231  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQ  109 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~  109 (302)
                      +||.||+.+|++++.+||.+|..||++|+|||..||++||....
T Consensus        19 ~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          19 MWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             CCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999997543

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.06  E-value=1.2e-11  Score=89.28  Aligned_cols=44  Identities=18%  Similarity=0.490  Sum_probs=39.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---cccccccccCCCCcccccccccc
Q 038795           11 GPWKAEEDEVLINHVKKYGPRD---WSSIRSKGLLQRTGKSCRLRWVN   55 (302)
Q Consensus        11 G~WT~EED~~L~~~V~~~G~~n---W~~Ias~~l~~Rt~~qCR~Rw~~   55 (302)
                      .+||+|||++|+++|..||.++   |..|| ..|+|||+.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia-~~l~gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVA-RAVEGRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHH-HHSTTCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHH-HHcCCCCHHHHHHHHHH
Confidence            4699999999999999999754   99995 56999999999999943

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=8.8e-11  Score=85.76  Aligned_cols=51  Identities=16%  Similarity=0.256  Sum_probs=43.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCcccccccccccc
Q 038795            5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKL   57 (302)
Q Consensus         5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L   57 (302)
                      ++.....+||+|||++|+++|.+|| .+|..|| .+|++||..||+.+|....
T Consensus        12 ~~~~~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia-~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          12 KDRQVMNMWSEQEKETFREKFMQHP-KNFGLIA-SFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TSTTTTTCCCTTTHHHHHHHHHHTT-SCSSSHH-HHTTTSCHHHHHHHHHHHT
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHC-CcHHHHH-HHcCCCCHHHHHHHHHHHH
Confidence            3344567899999999999999999 7899995 5699999999999997543

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.4e-10  Score=82.62  Aligned_cols=47  Identities=26%  Similarity=0.491  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccC
Q 038795           10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR   58 (302)
Q Consensus        10 KG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~   58 (302)
                      ...||+|||++|.+++..|| .+|..|| .+|++||..||+.||.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G-~~w~~Ia-~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYG-RDFQAIS-DVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHS-SCHHHHH-HHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhC-chHHHHH-HHcCCCCHHHHHHHHHHHHh
Confidence            35699999999999999999 7899995 56999999999999988753

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=1.4e-09  Score=84.47  Aligned_cols=53  Identities=19%  Similarity=0.313  Sum_probs=45.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCC--cccccccccCCCCcccccccccccc
Q 038795            4 KREEIRKGPWKAEEDEVLINHVKKYGPRD--WSSIRSKGLLQRTGKSCRLRWVNKL   57 (302)
Q Consensus         4 kK~~lrKG~WT~EED~~L~~~V~~~G~~n--W~~Ias~~l~~Rt~~qCR~Rw~~~L   57 (302)
                      ++.+.....||.|||+.|++.++++|.+.  |..|+.+ +++|++.|||+||+..+
T Consensus        27 ~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~-L~~Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          27 SSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQ-LGNKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHH-HSSCCHHHHHHHHHHHH
T ss_pred             CCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHH-cCCCCHHHHHHHHHHHH
Confidence            34566778899999999999999999543  9999655 99999999999997655

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.19  E-value=1e-06  Score=61.81  Aligned_cols=42  Identities=17%  Similarity=0.343  Sum_probs=39.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCcchhhhcc-CCCCCHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFGNKWARIATY-LPGRTDNDVKNFWSS  107 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G~kWs~IAk~-LpgRT~nq~KnRw~~  107 (302)
                      .||+||-.++.+++.+||.+|..|++. +++||..+|.++|..
T Consensus         3 ~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            699999999999999999999999985 699999999999864

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.4e-06  Score=61.71  Aligned_cols=43  Identities=23%  Similarity=0.386  Sum_probs=39.5

Q ss_pred             CCCHHHHHHHHHHHHHhC----CcchhhhccCCCCCHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFG----NKWARIATYLPGRTDNDVKNFWSSRQ  109 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G----~kWs~IAk~LpgRT~nq~KnRw~~l~  109 (302)
                      .||.+|+.+|.+++.+|.    ++|.+||.++ |||..+|..||+.+.
T Consensus         3 eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           3 EWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            699999999999999996    5799999999 999999999997653

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=4e-06  Score=58.72  Aligned_cols=44  Identities=25%  Similarity=0.345  Sum_probs=39.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccc
Q 038795           12 PWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNK   56 (302)
Q Consensus        12 ~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~   56 (302)
                      .||+||-.++.+++..|| ++|..|+...+++|+..||...|...
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            599999999999999999 79999965558999999999987643

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=1.8e-05  Score=55.95  Aligned_cols=45  Identities=18%  Similarity=0.285  Sum_probs=37.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CCcccccccccCCCCcccccccccccc
Q 038795           11 GPWKAEEDEVLINHVKKYGP---RDWSSIRSKGLLQRTGKSCRLRWVNKL   57 (302)
Q Consensus        11 G~WT~EED~~L~~~V~~~G~---~nW~~Ias~~l~~Rt~~qCR~Rw~~~L   57 (302)
                      +.||.||+.+|.+++.+|..   ..|.+||.. + ||+..+|..||...-
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~-v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHE-L-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH-H-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHH-H-CCCHHHHHHHHHHHH
Confidence            46999999999999999953   359999654 6 999999999986543

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.09  E-value=0.00057  Score=45.27  Aligned_cols=44  Identities=23%  Similarity=0.376  Sum_probs=38.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCcchhhhc---cCCCCCHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFGNKWARIAT---YLPGRTDNDVKNFWSSRQ  109 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G~kWs~IAk---~LpgRT~nq~KnRw~~l~  109 (302)
                      .||.||-.-|...|+.+|+.|..|--   +-+||+..++..+|..++
T Consensus         3 nft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           3 DFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            69999999999999999999999963   339999999999887653

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00012  Score=51.58  Aligned_cols=49  Identities=20%  Similarity=0.390  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC--------CcccccccccCCCCccccccccccccC
Q 038795           10 KGPWKAEEDEVLINHVKKYGPR--------DWSSIRSKGLLQRTGKSCRLRWVNKLR   58 (302)
Q Consensus        10 KG~WT~EED~~L~~~V~~~G~~--------nW~~Ias~~l~~Rt~~qCR~Rw~~~L~   58 (302)
                      |.+||.|||+.|++.|..+...        =|..++...++.+|-.+-|+||.++|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            5689999999999999998422        288886555799999999999998885

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.04  E-value=0.00052  Score=48.90  Aligned_cols=47  Identities=15%  Similarity=0.158  Sum_probs=39.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCcch---hhhcc--CCCCCHHHHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFGNKWA---RIATY--LPGRTDNDVKNFWSSRQKRL  112 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G~kWs---~IAk~--LpgRT~nq~KnRw~~l~kr~  112 (302)
                      .||+|+.+..++++.++|..|.   .|.+.  ++|+|..+|+.|...+.-++
T Consensus         9 ~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l   60 (64)
T d1irza_           9 LWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL   60 (64)
T ss_dssp             SSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence            7999999999999999998874   66655  59999999999987664433

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0027  Score=44.34  Aligned_cols=44  Identities=11%  Similarity=0.254  Sum_probs=38.0

Q ss_pred             CCCHHHHHHHHHHHHHhC--------Cc-chhhhc-cCCCCCHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFG--------NK-WARIAT-YLPGRTDNDVKNFWSSRQ  109 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G--------~k-Ws~IAk-~LpgRT~nq~KnRw~~l~  109 (302)
                      +||.+||+.|++.|.++.        +. |..+++ .++.+|-...|+||...+
T Consensus         4 ~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L   57 (59)
T d1fexa_           4 AFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            799999999999999873        22 999985 679999999999997654

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.55  E-value=0.003  Score=44.77  Aligned_cols=47  Identities=13%  Similarity=0.110  Sum_probs=35.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCc--cccccc-ccCCCCccccccccccc
Q 038795           10 KGPWKAEEDEVLINHVKKYGPRDW--SSIRSK-GLLQRTGKSCRLRWVNK   56 (302)
Q Consensus        10 KG~WT~EED~~L~~~V~~~G~~nW--~~Ias~-~l~~Rt~~qCR~Rw~~~   56 (302)
                      +-.||+||-++.+.+|..+|..+|  ..|... .++++|..||+.|.+.|
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            446999999999999999995444  345222 36889999999875544

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.41  E-value=0.017  Score=37.99  Aligned_cols=44  Identities=23%  Similarity=0.267  Sum_probs=35.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccc--ccCCCCcccccccccc
Q 038795           11 GPWKAEEDEVLINHVKKYGPRDWSSIRSK--GLLQRTGKSCRLRWVN   55 (302)
Q Consensus        11 G~WT~EED~~L~~~V~~~G~~nW~~Ias~--~l~~Rt~~qCR~Rw~~   55 (302)
                      .-||.||-.-|...|+++| ..|..|.-.  .-+||+......+|++
T Consensus         2 knft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHHh
Confidence            4599999999999999999 779999422  2368888888777754

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.23  E-value=0.064  Score=42.55  Aligned_cols=53  Identities=15%  Similarity=0.368  Sum_probs=43.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-Cc---chhhhc------------cCCCCCHHHHHHHHHHHHHHHHHH
Q 038795           63 NGCKFSLEEERIVIELQAQFG-NK---WARIAT------------YLPGRTDNDVKNFWSSRQKRLARI  115 (302)
Q Consensus        63 ~~~~WT~EED~lLlelv~~~G-~k---Ws~IAk------------~LpgRT~nq~KnRw~~l~kr~~r~  115 (302)
                      ++..+|++||.-|+-++.+|| ++   |..|-.            +|..||+..+..|.+++++-+.+-
T Consensus        48 k~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~kE  116 (128)
T d1ofcx2          48 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIERE  116 (128)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHHHH
Confidence            333799999999999999999 55   888732            347899999999999999877653

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.80  E-value=0.11  Score=36.94  Aligned_cols=44  Identities=11%  Similarity=0.227  Sum_probs=38.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCc----chhhhccCCCCCHHHHHHHHHHH
Q 038795           65 CKFSLEEERIVIELQAQFGNK----WARIATYLPGRTDNDVKNFWSSR  108 (302)
Q Consensus        65 ~~WT~EED~lLlelv~~~G~k----Ws~IAk~LpgRT~nq~KnRw~~l  108 (302)
                      ..|+++|=.+|-.++..+...    |..+|..+..||+.+|...|...
T Consensus         9 ~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~   56 (73)
T d1wgxa_           9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN   56 (73)
T ss_dssp             SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred             cccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhC
Confidence            379999999999999888743    99999999999999999888553

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.32  E-value=0.035  Score=39.64  Aligned_cols=51  Identities=18%  Similarity=0.384  Sum_probs=42.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---CCCcccccccccCCCCccccccccccccCCC
Q 038795            9 RKGPWKAEEDEVLINHVKKYG---PRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN   60 (302)
Q Consensus         9 rKG~WT~EED~~L~~~V~~~G---~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~   60 (302)
                      .-+.|+++|=++|-.++....   .+-|..|| .++..|++..|...|...+...
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA-~~VGtRSaeECQ~ky~~~~~~~   60 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVA-AAVGSRSPEECQRKYMENPRGK   60 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHH-HHTTTSCHHHHHHHHHHSSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHH-HHHccCCHHHHHHHHHhCcccc
Confidence            456899999999999998764   34599995 5699999999999998877543

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.88  E-value=0.34  Score=32.45  Aligned_cols=46  Identities=17%  Similarity=0.310  Sum_probs=40.4

Q ss_pred             CCCHHHHHHHHHHHHHhC-CcchhhhccCCCCCHHHHHHHHHHHHHH
Q 038795           66 KFSLEEERIVIELQAQFG-NKWARIATYLPGRTDNDVKNFWSSRQKR  111 (302)
Q Consensus        66 ~WT~EED~lLlelv~~~G-~kWs~IAk~LpgRT~nq~KnRw~~l~kr  111 (302)
                      .|+.-|=..++.+..+|| .+-..||..+.|+|..+|+.+.+..-+|
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw~r   47 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER   47 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            399999999999999999 5799999999999999999887665544