Citrus Sinensis ID: 038804

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
MKDKGVAAGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGLTQEDMLIQFQWKPMCAVDLKRKCPKGNNNSNLVVPMNPASPSIKTTMSVTMLIFYATEGTLLQTKLCLLTQQHRIELKTIWGNKFVAAMVRMGPIGVVTGQAGEIRANCRVINSKNA
ccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHccccccccccHHHHHHHHHHcccccccHHHcccccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccccccccccccccccc
cHccHHHHHHHHHHHHHHHccccccccEEcccccccccccHHHHccccccccccHHHHHHHHHHccccccHEEEcccccHHHHHHHHHHcccccccccccccccccccccccHHHHHHEEEEcccHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHcccccEcccccEccccccccccccc
MKDKGVAAGLLRMHFRDcfvrsgglgydvpagrrdgraskaseattnlpspafnaKQLTQSFaakgltqedMLIQFqwkpmcavdlkrkcpkgnnnsnlvvpmnpaspsikttMSVTMLIFYATEGTLLQTKLCLLTQQHRIELKTIWGNKFVAAMVRMGpigvvtgqageirancrvinskna
MKDKGVAAGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKaseattnlpspafnaKQLTQSFAAKGLTQEDMLIQFQWKPMCAVDLKRKCPKgnnnsnlvvpmnpaSPSIKTTMSVTMLIFYATEGTLLQTKLCLLTQQHRIELKTIWGNKFVAAMVRMGPIgvvtgqageirancrvinskna
MKDKGVAAGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGLTQEDMLIQFQWKPMCAVDLKRKCPKGNNNSNLVVPMNPASPSIKTTMSVTMLIFYATEGtllqtklclltqqHRIELKTIWGNKFVAAMVRMGPIGVVTGQAGEIRANCRVINSKNA
******AAGLLRMHFRDCFVRSGGLGYDV********************************FAAKGLTQEDMLIQFQWKPMCAVDLKRKCP******************IKTTMSVTMLIFYATEGTLLQTKLCLLTQQHRIELKTIWGNKFVAAMVRMGPIGVVTGQAGEIRANCRVI*****
*KDKGVAAGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGLTQEDMLIQFQWKPMCAVDLKRKCP***NNSNLVVPMNPASPSIKTTMSVTMLIFYATEGTLLQTKLCLLTQQHRIELKTIWGNKFVAAMVRMGPIGVVTGQAGEIRANC*VI*****
MKDKGVAAGLLRMHFRDCFVRSGGLGYDVPAGRR***********TNLPSPAFNAKQLTQSFAAKGLTQEDMLIQFQWKPMCAVDLKRKCPKGNNNSNLVVPMNPASPSIKTTMSVTMLIFYATEGTLLQTKLCLLTQQHRIELKTIWGNKFVAAMVRMGPIGVVTGQAGEIRANCRVINSKNA
***KGVAAGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGLTQEDMLIQFQWKPMCAVDLKRKCPKGNNNSNLVVPMNPASPSIKTTMSVTMLIFYATEGTLLQTKLCLLTQQHRIELKTIWGNKFVAAMVRMGPIGVVTGQAGEIRANCR*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKDKGVAAGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGLTQEDMLIQFQWKPMCAVDLKRKCPKGNNNSNLVVPMNPASPSIKTTMSVTMLIFYATEGTLLQTKLCLLTQQHRIELKTIWGNKFVAAMVRMGPIGVVTGQAGEIRANCRVINSKNA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query184 2.2.26 [Sep-21-2011]
A7QEU4329 Peroxidase 5 OS=Vitis vin yes no 0.961 0.537 0.446 6e-36
A5H8G4367 Peroxidase 1 OS=Zea mays N/A no 0.929 0.465 0.304 9e-18
Q96522325 Peroxidase 45 OS=Arabidop yes no 0.956 0.541 0.272 4e-16
Q9FEQ8335 Peroxidase 2 OS=Zea mays N/A no 0.929 0.510 0.284 2e-15
Q67Z07325 Peroxidase 2 OS=Arabidops no no 0.929 0.526 0.302 2e-14
P0DI10325 Peroxidase 1 OS=Arabidops no no 0.929 0.526 0.302 2e-14
Q96518323 Peroxidase 16 OS=Arabidop no no 0.967 0.551 0.265 3e-14
O23044326 Peroxidase 3 OS=Arabidops no no 0.923 0.521 0.308 3e-14
Q96520358 Peroxidase 12 OS=Arabidop no no 0.940 0.483 0.292 5e-14
Q43735321 Peroxidase 27 OS=Arabidop no no 0.896 0.514 0.304 2e-13
>sp|A7QEU4|PER5_VITVI Peroxidase 5 OS=Vitis vinifera GN=GSVIVT00037159001 PE=1 SV=2 Back     alignment and function desciption
 Score =  150 bits (378), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 95/213 (44%), Positives = 120/213 (56%), Gaps = 36/213 (16%)

Query: 4   KGVA--AGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQS 61
           KGV   A ++    RD    +GGLGYDVPAGRRDGR S ASEA+TNLP P F   QLTQ 
Sbjct: 118 KGVVSCADIVAFAARDSVEITGGLGYDVPAGRRDGRISLASEASTNLPPPTFTVDQLTQF 177

Query: 62  FAAKGLTQEDM--------------------LIQFQ--------WKPMCAVDLKRKCPKG 93
           F+ KGLTQ++M                    L  F           P  A  LK +CP+G
Sbjct: 178 FSNKGLTQDEMVTLSGAHTIGRSHCSSFSNRLYNFNGTSGQDPTLDPQYAASLKTQCPQG 237

Query: 94  NNNSNLVVPMNPASPSIKTT-MSVTML----IFYATEGTLLQTKLCLLTQQHRIELKTIW 148
           + N+NLVVPMNP+SPSI      V +L    +F + +  L  T      +Q+      +W
Sbjct: 238 STNTNLVVPMNPSSPSITDVGYYVDVLRNRGLFTSDQTLLTDTTTATQVRQNAGN-PFLW 296

Query: 149 GNKFVAAMVRMGPIGVVTGQAGEIRANCRVINS 181
            NKF +AMV+MG +GV+ G+AG+IRANCRVINS
Sbjct: 297 KNKFASAMVKMGQLGVLIGEAGQIRANCRVINS 329
Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.
Vitis vinifera (taxid: 29760)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 7
>sp|A5H8G4|PER1_MAIZE Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1 Back     alignment and function description
>sp|Q96522|PER45_ARATH Peroxidase 45 OS=Arabidopsis thaliana GN=PER45 PE=1 SV=1 Back     alignment and function description
>sp|Q9FEQ8|PER2_MAIZE Peroxidase 2 OS=Zea mays GN=PER2 PE=2 SV=1 Back     alignment and function description
>sp|Q67Z07|PER2_ARATH Peroxidase 2 OS=Arabidopsis thaliana GN=PER2 PE=2 SV=1 Back     alignment and function description
>sp|P0DI10|PER1_ARATH Peroxidase 1 OS=Arabidopsis thaliana GN=PER1 PE=1 SV=1 Back     alignment and function description
>sp|Q96518|PER16_ARATH Peroxidase 16 OS=Arabidopsis thaliana GN=PER16 PE=1 SV=2 Back     alignment and function description
>sp|O23044|PER3_ARATH Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=2 SV=1 Back     alignment and function description
>sp|Q96520|PER12_ARATH Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=1 SV=1 Back     alignment and function description
>sp|Q43735|PER27_ARATH Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query184
357464249 316 Peroxidase [Medicago truncatula] gi|3554 0.967 0.563 0.415 1e-34
357464247 327 Peroxidase [Medicago truncatula] gi|3554 0.967 0.544 0.415 2e-34
359490771 318 PREDICTED: peroxidase 5-like isoform 2 [ 0.961 0.556 0.446 3e-34
359490769 329 PREDICTED: peroxidase 5-like isoform 1 [ 0.961 0.537 0.446 3e-34
388508152 327 unknown [Medicago truncatula] 0.967 0.544 0.405 3e-33
356518673283 PREDICTED: LOW QUALITY PROTEIN: peroxida 0.891 0.579 0.392 5e-31
224134965 291 predicted protein [Populus trichocarpa] 0.967 0.611 0.400 5e-31
363808146 327 uncharacterized protein LOC100779031 pre 0.945 0.532 0.398 9e-31
4760700 322 peroxidase 1 [Scutellaria baicalensis] 0.929 0.531 0.405 9e-31
224118506 329 predicted protein [Populus trichocarpa] 0.934 0.522 0.384 3e-28
>gi|357464249|ref|XP_003602406.1| Peroxidase [Medicago truncatula] gi|355491454|gb|AES72657.1| Peroxidase [Medicago truncatula] Back     alignment and taxonomy information
 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/212 (41%), Positives = 110/212 (51%), Gaps = 34/212 (16%)

Query: 4   KGVA--AGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQS 61
           KG+   A ++    RD    +GGLGYDVPAGRRDG+ S AS+  T LP P FN  QLTQ 
Sbjct: 105 KGIVSCADIVAFAARDSVELAGGLGYDVPAGRRDGKISLASDTRTELPPPTFNVNQLTQL 164

Query: 62  FAAKGLTQEDM--------------------LIQFQ--------WKPMCAVDLKRKCPKG 93
           FA KGLTQ++M                    L  F           P  A  LKR+CP+G
Sbjct: 165 FAKKGLTQDEMVTLSGAHTIGRSHCSAFSKRLYNFSSTSIQDPSLDPSYAALLKRQCPQG 224

Query: 94  NNNSNLVVPMNPASPSIKTTMSVTMLI----FYATEGTLLQTKLCLLTQQHRIELKTIWG 149
           N N NLVVPM+P+SP          ++     + ++ TLL                 +W 
Sbjct: 225 NTNQNLVVPMDPSSPGTADVGYYNDILANRGLFTSDQTLLTNTGTARKVHQNARNPYLWS 284

Query: 150 NKFVAAMVRMGPIGVVTGQAGEIRANCRVINS 181
           NKF  AMV+MG +GV+TG AGEIR NCRV+NS
Sbjct: 285 NKFADAMVKMGQVGVLTGNAGEIRTNCRVVNS 316

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357464247|ref|XP_003602405.1| Peroxidase [Medicago truncatula] gi|355491453|gb|AES72656.1| Peroxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|359490771|ref|XP_003634165.1| PREDICTED: peroxidase 5-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359490769|ref|XP_003634164.1| PREDICTED: peroxidase 5-like isoform 1 [Vitis vinifera] gi|300669658|sp|A7QEU4.2|PER5_VITVI RecName: Full=Peroxidase 5; Flags: Precursor Back     alignment and taxonomy information
>gi|388508152|gb|AFK42142.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356518673|ref|XP_003528003.1| PREDICTED: LOW QUALITY PROTEIN: peroxidase 5-like [Glycine max] Back     alignment and taxonomy information
>gi|224134965|ref|XP_002321949.1| predicted protein [Populus trichocarpa] gi|222868945|gb|EEF06076.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|363808146|ref|NP_001241968.1| uncharacterized protein LOC100779031 precursor [Glycine max] gi|255641113|gb|ACU20835.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|4760700|dbj|BAA77387.1| peroxidase 1 [Scutellaria baicalensis] Back     alignment and taxonomy information
>gi|224118506|ref|XP_002317837.1| predicted protein [Populus trichocarpa] gi|222858510|gb|EEE96057.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query184
TAIR|locus:2207210326 RCI3 "RARE COLD INDUCIBLE GENE 0.364 0.205 0.417 9e-17
TAIR|locus:2128921325 AT4G30170 [Arabidopsis thalian 0.391 0.221 0.402 2.4e-16
TAIR|locus:2044485323 AT2G18980 [Arabidopsis thalian 0.391 0.222 0.416 1.2e-15
TAIR|locus:2057180349 AT2G38380 [Arabidopsis thalian 0.554 0.292 0.266 1.9e-15
TAIR|locus:2013001358 AT1G71695 [Arabidopsis thalian 0.347 0.178 0.461 2.2e-15
TAIR|locus:2083088329 AT3G49960 [Arabidopsis thalian 0.391 0.218 0.416 4.9e-15
TAIR|locus:2166508322 AT5G51890 [Arabidopsis thalian 0.353 0.201 0.484 5.5e-15
TAIR|locus:2057165349 AT2G38390 [Arabidopsis thalian 0.554 0.292 0.284 6e-15
TAIR|locus:2120061329 AT4G37530 [Arabidopsis thalian 0.391 0.218 0.430 7.4e-15
TAIR|locus:2119251325 AT4G33420 [Arabidopsis thalian 0.353 0.2 0.469 9.3e-15
TAIR|locus:2207210 RCI3 "RARE COLD INDUCIBLE GENE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 138 (53.6 bits), Expect = 9.0e-17, Sum P(2) = 9.0e-17
 Identities = 28/67 (41%), Positives = 40/67 (59%)

Query:     8 AGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGL 67
             A ++ +  RD  V +GG  + VP GRRDGR S A+EA  N+P P  N   L   FA +GL
Sbjct:   120 ADIIALASRDAVVFTGGPNWSVPTGRRDGRISNAAEALANIPPPTSNITNLQTLFANQGL 179

Query:    68 TQEDMLI 74
               +D+++
Sbjct:   180 DLKDLVL 186
GO:0004601 "peroxidase activity" evidence=IEA;ISS;IDA
GO:0005576 "extracellular region" evidence=ISM
GO:0006979 "response to oxidative stress" evidence=IEA
GO:0020037 "heme binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=ISS
GO:0009269 "response to desiccation" evidence=IMP
GO:0009409 "response to cold" evidence=IEP
GO:0042538 "hyperosmotic salinity response" evidence=IMP
GO:0006826 "iron ion transport" evidence=RCA
GO:0010054 "trichoblast differentiation" evidence=RCA
GO:0010106 "cellular response to iron ion starvation" evidence=RCA
GO:0010167 "response to nitrate" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA
TAIR|locus:2128921 AT4G30170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044485 AT2G18980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057180 AT2G38380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013001 AT1G71695 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083088 AT3G49960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166508 AT5G51890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057165 AT2G38390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120061 AT4G37530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119251 AT4G33420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.11.1.7LOW CONFIDENCE prediction!
3rd Layer1.11.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00037159001
SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence;; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue (362 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query184
cd00693298 cd00693, secretory_peroxidase, Horseradish peroxid 1e-33
pfam00141180 pfam00141, peroxidase, Peroxidase 7e-13
PLN03030324 PLN03030, PLN03030, cationic peroxidase; Provision 3e-10
cd00693298 cd00693, secretory_peroxidase, Horseradish peroxid 6e-06
pfam00141180 pfam00141, peroxidase, Peroxidase 0.004
>gnl|CDD|173827 cd00693, secretory_peroxidase, Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information 
 Score =  120 bits (304), Expect = 1e-33
 Identities = 71/203 (34%), Positives = 95/203 (46%), Gaps = 48/203 (23%)

Query: 16  RDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGLTQEDM--- 72
           RD  V +GG  Y+VP GRRDGR S A++   NLPSP F+  QL   FA+KGLT  D+   
Sbjct: 105 RDAVVLAGGPSYEVPLGRRDGRVSSANDVG-NLPSPFFSVSQLISLFASKGLTVTDLVAL 163

Query: 73  -----------------LIQFQWKPMC--------AVDLKRKCPKGNNNSNLVVPMNPAS 107
                            L  F              A  L++KCP G ++  L VP++P +
Sbjct: 164 SGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTL-VPLDPGT 222

Query: 108 PSIKTTMSVTMLIFY----ATEGTLLQTKLCLLTQQHRIEL-------KTIWGNKFVAAM 156
           P+           +Y    A  G LL +   LL+      +       +  +   F AAM
Sbjct: 223 PNTFDNS------YYKNLLAGRG-LLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAM 275

Query: 157 VRMGPIGVVTGQAGEIRANCRVI 179
           V+MG IGV+TG  GEIR NCRV+
Sbjct: 276 VKMGNIGVLTGSQGEIRKNCRVV 298

Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. Length = 298
>gnl|CDD|215745 pfam00141, peroxidase, Peroxidase Back     alignment and domain information
>gnl|CDD|215545 PLN03030, PLN03030, cationic peroxidase; Provisional Back     alignment and domain information
>gnl|CDD|173827 cd00693, secretory_peroxidase, Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information
>gnl|CDD|215745 pfam00141, peroxidase, Peroxidase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 184
PLN03030324 cationic peroxidase; Provisional 100.0
cd00693298 secretory_peroxidase Horseradish peroxidase and re 100.0
PLN02608289 L-ascorbate peroxidase 100.0
cd00691253 ascorbate_peroxidase Ascorbate peroxidases and cyt 100.0
cd00692328 ligninase Ligninase and other manganese-dependent 100.0
PLN02364250 L-ascorbate peroxidase 1 100.0
PLN02879251 L-ascorbate peroxidase 100.0
PF00141230 peroxidase: Peroxidase; InterPro: IPR002016 Peroxi 100.0
cd00314255 plant_peroxidase_like Heme-dependent peroxidases s 99.97
cd08201264 plant_peroxidase_like_1 Uncharacterized family of 99.96
cd00649409 catalase_peroxidase_1 N-terminal catalytic domain 99.96
TIGR00198 716 cat_per_HPI catalase/peroxidase HPI. Note that the 99.93
PRK15061 726 catalase/hydroperoxidase HPI(I); Provisional 99.91
cd08200297 catalase_peroxidase_2 C-terminal non-catalytic dom 99.68
PRK15061726 catalase/hydroperoxidase HPI(I); Provisional 99.44
TIGR00198716 cat_per_HPI catalase/peroxidase HPI. Note that the 99.38
COG0376 730 KatG Catalase (peroxidase I) [Inorganic ion transp 98.73
COG0376730 KatG Catalase (peroxidase I) [Inorganic ion transp 95.38
>PLN03030 cationic peroxidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2e-60  Score=411.65  Aligned_cols=174  Identities=35%  Similarity=0.575  Sum_probs=160.2

Q ss_pred             CCCcCcchhhhhhhcccceecC----------------------------------------------------------
Q 038804            1 MKDKGVAAGLLRMHFRDCFVRS----------------------------------------------------------   22 (184)
Q Consensus         1 ~~d~~~~a~llrl~fhDcfv~g----------------------------------------------------------   22 (184)
                      ++||+++|+|||||||||||+|                                                          
T Consensus        50 ~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~~~Ek~a~~N~~l~Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~  129 (324)
T PLN03030         50 QSNPAIAPGLLRMHFHDCFVRGCDASILIDGSNTEKTALPNLLLRGYDVIDDAKTQLEAACPGVVSCADILALAARDSVV  129 (324)
T ss_pred             hhCcccchhhhhhhhhhheecCCceEEeeCCCcccccCCCCcCcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhcccc
Confidence            4799999999999999999999                                                          


Q ss_pred             --CCcceecCCCCccCCCCccccccCCCCCCCcChHHHHHHHHhcCCCccccccc-------------------------
Q 038804           23 --GGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGLTQEDMLIQ-------------------------   75 (184)
Q Consensus        23 --GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~kGl~~~d~VaL-------------------------   75 (184)
                        |||.|+|++||||+++|.++++. +||+|+.++++|++.|++|||+.+|||+|                         
T Consensus       130 ~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~  208 (324)
T PLN03030        130 LTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTG  208 (324)
T ss_pred             ccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCC
Confidence              99999999999999999888775 89999999999999999999999999999                         


Q ss_pred             ----CCCCHHHHHHhhccCCCCCCCCCCccCCCCCCCC-CchhhhHHHHHhcCCCcccccchHHHHh----hhhHH---h
Q 038804           76 ----FQWKPMCAVDLKRKCPKGNNNSNLVVPMNPASPS-IKTTMSVTMLIFYATEGTLLQTKLCLLT----QQHRI---E  143 (184)
Q Consensus        76 ----~~~~~~~~~~l~~~Cp~~~~~~~~~~~~D~~Tp~-FDn~Yy~~ll~~~~~~~glL~SD~~L~~----~~~V~---~  143 (184)
                          |+|++.|+.+|++.||..++ .+..+++|+.||. |||+||++|+   +++ |+|+|||+|++    +++|+   .
T Consensus       209 ~~~Dp~~d~~~~~~L~~~Cp~~~~-~~~~~~lD~~Tp~~FDn~Yy~nll---~~r-GlL~SDq~L~~d~~T~~~V~~~A~  283 (324)
T PLN03030        209 NGADPSIDASFVPQLQALCPQNGD-GSRRIALDTGSSNRFDASFFSNLK---NGR-GILESDQKLWTDASTRTFVQRFLG  283 (324)
T ss_pred             CCCCCchhHHHHHHHhccCCCCCC-CCccccCCCCCCcccccHHHHHHH---hcC-CCcCCchHhhcCccHHHHHHHHhc
Confidence                35888999999999995332 2346789999999 9999999999   999 99999999997    78887   4


Q ss_pred             h----HHHHHHHHHHHHHHhccCCCCCCCCCcccccccccc
Q 038804          144 L----KTIWGNKFVAAMVRMGPIGVVTGQAGEIRANCRVIN  180 (184)
Q Consensus       144 d----~~~F~~~F~~am~Km~~igv~tg~~GeiR~~C~~~N  180 (184)
                      |    ++.||++|++||+|||+|+|+||.+||||++|+.+|
T Consensus       284 ~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN  324 (324)
T PLN03030        284 VRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN  324 (324)
T ss_pred             ccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence            4    469999999999999999999999999999999998

>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information
>PLN02608 L-ascorbate peroxidase Back     alignment and domain information
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>PLN02364 L-ascorbate peroxidase 1 Back     alignment and domain information
>PLN02879 L-ascorbate peroxidase Back     alignment and domain information
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions Back     alignment and domain information
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query184
3hdl_A304 Crystal Structure Of Highly Glycosylated Peroxidase 7e-22
1sch_A294 Peanut Peroxidase Length = 294 5e-11
3atj_A309 Heme Ligand Mutant Of Recombinant Horseradish Perox 8e-09
1qgj_A300 Arabidopsis Thaliana Peroxidase N Length = 300 1e-08
6atj_A308 Recombinant Horseradish Peroxidase C Complex With F 4e-08
1gw2_A308 Recombinant Horseradish Peroxidase C1a Thr171ser In 4e-08
1kzm_A308 Distal Heme Pocket Mutant (r38s/h42e) Of Recombinan 5e-08
4atj_A309 Distal Heme Pocket Mutant (H42e) Of Recombinant Hor 5e-08
2atj_A308 Recombinant Horseradish Peroxidase Complex With Ben 5e-08
1atj_A306 Recombinant Horseradish Peroxidase C1a Length = 306 5e-08
1w4w_A323 Ferric Horseradish Peroxidase C1a In Complex With F 5e-08
2ylj_A306 Horse Radish Peroxidase, Mutant S167y Length = 306 6e-08
1gwo_A309 Recombinant Horseradish Peroxidase C1a Ala170gln Le 6e-08
1gwu_A309 Recombinant Horseradish Peroxidase C1a Ala140gly Le 6e-08
1gx2_A309 Recombinant Horseradish Peroxidase Phe209ser Comple 2e-07
1fhf_A304 The Structure Of Soybean Peroxidase Length = 304 3e-07
4a5g_A308 Raphanus Sativus Anionic Peroxidase. Length = 308 3e-05
1bgp_A309 Crystal Structure Of Barley Grain Peroxidase 1 Leng 1e-04
1pa2_A306 Arabidopsis Thaliana Peroxidase A2 Length = 306 2e-04
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree Length = 304 Back     alignment and structure 
Iteration: 1

 Score = 99.8 bits (247), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 95/208 (45%), Gaps = 35/208 (16%)
Query: 8   AGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGL 67
           A +L    RD    +G + Y VP+GRRDG  S ASEA   +PSP FNA QL  SFA K L
Sbjct: 98  ADILAFAARDSANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTL 157
Query: 68  TQEDML----------------------------IQFQWKPMCAVDLKRKCPKGNNN-SN 98
           T ++M+                            I     P  A  L+  CP  +   + 
Sbjct: 158 TADEMVTLSGAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTP 217
Query: 99  LVVPMNPASPSI-----KTTMSVTMLIFYATEGXXXXXXXXXXXXXHRIELKTIWGNKFV 153
           + V ++  +PS+      T + +T+ +  + +              + + L T W +KF 
Sbjct: 218 ITVSLDIITPSVLDNMYYTGVQLTLGLLTSDQALVTEANLSAAVKANAMNL-TAWASKFA 276
Query: 154 AAMVRMGPIGVVTGQAGEIRANCRVINS 181
            AMV+MG I V+TG  GEIR NC V+NS
Sbjct: 277 QAMVKMGQIEVLTGTQGEIRTNCSVVNS 304
>pdb|1SCH|A Chain A, Peanut Peroxidase Length = 294 Back     alignment and structure
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N Length = 300 Back     alignment and structure
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant Horseradish Peroxidase C (hrp C) Length = 308 Back     alignment and structure
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With Benzhydroxamic Acid Length = 308 Back     alignment and structure
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Length = 306 Back     alignment and structure
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate Length = 323 Back     alignment and structure
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y Length = 306 Back     alignment and structure
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln Length = 309 Back     alignment and structure
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly Length = 309 Back     alignment and structure
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase Length = 304 Back     alignment and structure
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase. Length = 308 Back     alignment and structure
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 Length = 309 Back     alignment and structure
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2 Length = 306 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query184
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 1e-41
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 2e-06
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 2e-41
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 2e-06
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 2e-40
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 2e-06
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 2e-40
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 2e-06
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 9e-40
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 2e-06
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 6e-38
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 3e-06
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 3e-36
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 3e-06
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 4e-09
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 7e-08
2e39_A344 Peroxidase; heme protein, coordination geometry of 1e-06
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 5e-06
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 5e-06
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 3e-04
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 6e-04
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} Length = 304 Back     alignment and structure
 Score =  140 bits (356), Expect = 1e-41
 Identities = 69/210 (32%), Positives = 90/210 (42%), Gaps = 55/210 (26%)

Query: 16  RDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGLTQEDM--- 72
           RD    +G + Y VP+GRRDG  S ASEA   +PSP FNA QL  SFA K LT ++M   
Sbjct: 106 RDSANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTL 165

Query: 73  -----------------LIQFQWKPMC--------AVDLKRKCPK-GNNNSNLVVPMNPA 106
                            L  F              A  L+  CP      + + V ++  
Sbjct: 166 SGAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDII 225

Query: 107 SPSIKTTMSVTMLIF---Y-----ATEGTLLQTKLCLLTQQHRIEL-------KTIWGNK 151
           +PS          +    Y      T G LL +   L+T+ +            T W +K
Sbjct: 226 TPS----------VLDNMYYTGVQLTLG-LLTSDQALVTEANLSAAVKANAMNLTAWASK 274

Query: 152 FVAAMVRMGPIGVVTGQAGEIRANCRVINS 181
           F  AMV+MG I V+TG  GEIR NC V+NS
Sbjct: 275 FAQAMVKMGQIEVLTGTQGEIRTNCSVVNS 304
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} Length = 304 Back     alignment and structure
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Length = 294 Back     alignment and structure
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Length = 294 Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Length = 306 Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Length = 306 Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Length = 309 Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Length = 309 Back     alignment and structure
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Length = 304 Back     alignment and structure
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Length = 304 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Length = 309 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Length = 309 Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Length = 300 Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Length = 300 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Length = 295 Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* Length = 331 Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Length = 344 Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} Length = 338 Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Length = 261 Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Length = 343 Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Length = 357 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query184
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 100.0
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 100.0
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 100.0
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 100.0
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 100.0
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 100.0
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 100.0
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 100.0
2e39_A344 Peroxidase; heme protein, coordination geometry of 100.0
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 100.0
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 100.0
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 100.0
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 100.0
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 100.0
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 100.0
2cca_A 740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
1itk_A 731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
1ub2_A 720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 100.0
1u2k_A309 Peroxidase/catalase HPI; KATG, catalase-peroxidase 100.0
3vli_A 737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 99.97
3ut2_A 764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 99.97
3n3r_A 748 Catalase-peroxidase; E198A variant, tuberclosis, i 99.97
1ub2_A720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 99.96
1itk_A731 Catalase-peroxidase; heme protein, oxidoreductase; 99.95
2cca_A740 Peroxidase/catalase T; oxidoreductase, catalase-pe 99.95
3rrw_A268 Thylakoid lumenal 29 kDa protein, chloroplastic; c 99.92
3vli_A737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 99.91
3ut2_A764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 99.89
3n3r_A748 Catalase-peroxidase; E198A variant, tuberclosis, i 99.89
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} SCOP: a.93.1.0 Back     alignment and structure
Probab=100.00  E-value=5.4e-62  Score=418.67  Aligned_cols=176  Identities=44%  Similarity=0.725  Sum_probs=164.3

Q ss_pred             CCcCcchhhhhhhcccceecC-----------------------------------------------------------
Q 038804            2 KDKGVAAGLLRMHFRDCFVRS-----------------------------------------------------------   22 (184)
Q Consensus         2 ~d~~~~a~llrl~fhDcfv~g-----------------------------------------------------------   22 (184)
                      +||++||+|||||||||||+|                                                           
T Consensus        28 ~d~~~aa~llRL~FHDCfv~GCDgSiLld~t~~~~~Ek~~~~N~~~lrgf~vid~iK~~le~~Cp~~VScADilalAard  107 (304)
T 3hdl_A           28 NNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARD  107 (304)
T ss_dssp             HCTTHHHHHHHHHHHHHTTTSSSSGGGCCCBTTBCCGGGSTTTTTTCCCHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHH
T ss_pred             hCCcchHHHHHHheecccCCCCCeeeeecCCCCCcccccCCCcccchHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhh
Confidence            589999999999999999999                                                           


Q ss_pred             -----CCcceecCCCCccCCCCccccccCCCCCCCcChHHHHHHHHhcCCCccccccc----------------------
Q 038804           23 -----GGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGLTQEDMLIQ----------------------   75 (184)
Q Consensus        23 -----GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~kGl~~~d~VaL----------------------   75 (184)
                           |||.|+|++||||+++|.+++++++||+|+.++++|++.|++|||+.+|||||                      
T Consensus       108 av~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaLsGaHTiG~ahC~~f~~Rly~f~  187 (304)
T 3hdl_A          108 SANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTNRLYNFN  187 (304)
T ss_dssp             HHHHHHCCCCCCEECCCBCSCCCHHHHHHHSCCTTCCHHHHHHHHHTTTCCHHHHHHHGGGGGSSEEEGGGTGGGTSSCS
T ss_pred             hhhccCCCccccccCccCCCCCCccccccCCCCCCCCHHHHHHHHHHcCCCHHHhhhhhccccccccccchhhhhhcccC
Confidence                 99999999999999999998888899999999999999999999999999999                      


Q ss_pred             ------CCCCHHHHHHhhccCCCCCC-CCCCccCCCCCCCC-CchhhhHHHHHhcCCCcccccchHHHHh----hhhHH-
Q 038804           76 ------FQWKPMCAVDLKRKCPKGNN-NSNLVVPMNPASPS-IKTTMSVTMLIFYATEGTLLQTKLCLLT----QQHRI-  142 (184)
Q Consensus        76 ------~~~~~~~~~~l~~~Cp~~~~-~~~~~~~~D~~Tp~-FDn~Yy~~ll~~~~~~~glL~SD~~L~~----~~~V~-  142 (184)
                            |+|++.|+..|+..||.+++ .+...++||+.||. |||+||++|+   .++ |||+|||+|+.    +.+|+ 
T Consensus       188 ~~~~~DP~ld~~~a~~L~~~Cp~~~~~~~~~~~~lD~~TP~~FDN~Yy~nL~---~~~-glL~SDq~L~~d~~t~~~V~~  263 (304)
T 3hdl_A          188 SGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQ---LTL-GLLTSDQALVTEANLSAAVKA  263 (304)
T ss_dssp             SSSSSCTTSCHHHHHHHHHHSCTTCCTTSCCEEESCSSSTTSCSTHHHHHHH---TTC-CCSHHHHGGGSSHHHHHHHHH
T ss_pred             CCCCCCCcccHHHHHHHhccCCCCCCCCCccccCCCCCCcccccHHHHHHHH---hCc-CCCCCCHHHhcCccHHHHHHH
Confidence                  56889999999999997542 13457889999999 9999999999   999 99999999997    78888 


Q ss_pred             --hhHHHHHHHHHHHHHHhccCCCCCCCCCccccccccccC
Q 038804          143 --ELKTIWGNKFVAAMVRMGPIGVVTGQAGEIRANCRVINS  181 (184)
Q Consensus       143 --~d~~~F~~~F~~am~Km~~igv~tg~~GeiR~~C~~~N~  181 (184)
                        .||+.||++|++||+|||+|+|+||.+||||++|+++|+
T Consensus       264 yA~~~~~F~~~Fa~AmvKmg~igv~tg~~GeIR~~C~~~N~  304 (304)
T 3hdl_A          264 NAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSVVNS  304 (304)
T ss_dssp             HHHCHHHHHHHHHHHHHHHTTTTCCCTTSSBCCSBTTBCC-
T ss_pred             hccCHHHHHHHHHHHHHHHHhcCCCCCCCCeeeCCccccCC
Confidence              799999999999999999999999999999999999994
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Back     alignment and structure
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* 4fcn_A* 4g05_A* 4fcs_A* 4fef_A* 4fdq_A* Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* 4ged_A* Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} SCOP: a.93.1.0 Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} SCOP: a.93.1.1 PDB: 4a71_A* 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 4a6z_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* ... Back     alignment and structure
>1u2k_A Peroxidase/catalase HPI; KATG, catalase-peroxidase, C-terminal domain, oxidoreductase; 2.00A {Escherichia coli} SCOP: a.93.1.3 PDB: 1u2l_A 1u2j_A Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana} Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 184
d1pa2a_306 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 8e-26
d1pa2a_306 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 8e-05
d1scha_294 a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hy 9e-26
d1scha_294 a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hy 3e-04
d1gwua_307 a.93.1.1 (A:) Plant peroxidase {Horseradish (Armor 1e-25
d1gwua_307 a.93.1.1 (A:) Plant peroxidase {Horseradish (Armor 8e-05
d1qgja_300 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 3e-25
d1qgja_300 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 3e-05
d1fhfa_304 a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine m 4e-25
d1fhfa_304 a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine m 2e-04
d1bgpa_309 a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vu 3e-23
d1bgpa_309 a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vu 8e-05
d1iyna_275 a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco 2e-10
d1iyna_275 a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco 8e-04
d1yyda1357 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) { 5e-07
d1yyda1 357 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) { 0.002
d2e39a1336 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) { 1e-06
d1llpa_343 a.93.1.1 (A:) Fungal peroxidase (ligninase) {White 1e-06
d1llpa_ 343 a.93.1.1 (A:) Fungal peroxidase (ligninase) {White 0.001
d2euta1291 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {B 8e-06
d1oafa_250 a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glyci 2e-05
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Length = 306 Back     information, alignment and structure

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]

 Score = 98.6 bits (245), Expect = 8e-26
 Identities = 43/211 (20%), Positives = 80/211 (37%), Gaps = 41/211 (19%)

Query: 8   AGLLRMHFRDCFVRSGGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGL 67
           + +L +        +GG  + V  GRRD   +  + A +++PSP  +   +T  F+A GL
Sbjct: 99  SDVLALASEASVSLAGGPSWTVLLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGL 158

Query: 68  TQEDMLIQ--------------------FQWK--------PMCAVDLKRKCPKGNNNSNL 99
              D++                      F                 L++ CP+  + S +
Sbjct: 159 NTNDLVALSGAHTFGRARCGVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTI 218

Query: 100 VVPMNPASPSIKTTMSVTMLIFYATEGTLLQTKLCLLTQQHRIELKTI---------WGN 150
              ++ ++P          L   + +G LLQ+   L +      +  +         +  
Sbjct: 219 T-NLDLSTPDAFDNNYFANLQ--SNDG-LLQSDQELFSTTGSSTIAIVTSFASNQTLFFQ 274

Query: 151 KFVAAMVRMGPIGVVTGQAGEIRANCRVINS 181
            F  +M+ MG I  +TG  GEIR +C+ +N 
Sbjct: 275 AFAQSMINMGNISPLTGSNGEIRLDCKKVNG 305
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Length = 306 Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Length = 294 Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Length = 294 Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Length = 307 Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Length = 307 Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 304 Back     information, alignment and structure
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 304 Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Length = 309 Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Length = 309 Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 275 Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 275 Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 357 Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 357 Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Length = 336 Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 343 Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 343 Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 291 Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 250 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query184
d1fhfa_304 Plant peroxidase {Soybean (Glycine max) [TaxId: 38 100.0
d1pa2a_306 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1bgpa_309 Plant peroxidase {Barley (Hordeum vulgare), peroxi 100.0
d1qgja_300 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1scha_294 Plant peroxidase {Peanut (Arachis hypogaea) [TaxId 100.0
d1gwua_307 Plant peroxidase {Horseradish (Armoracia rusticana 100.0
d1iyna_275 Ascorbate peroxidase {Common tobacco (Nicotiana ta 100.0
d2e39a1336 Fungal peroxidase (ligninase) {Arthromyces ramosus 100.0
d1yyda1357 Fungal peroxidase (ligninase) {Basidomycetos fungu 100.0
d1oafa_250 Ascorbate peroxidase {Soybean (Glycine max) [TaxId 100.0
d1llpa_343 Fungal peroxidase (ligninase) {White rot basidiomy 100.0
d2euta1291 Cytochrome c peroxidase, CCP {Baker's yeast (Sacch 100.0
d1mwva2308 Catalase-peroxidase KatG {Burkholderia pseudomalle 99.71
d1ub2a2294 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 99.69
d1u2ka_292 Catalase-peroxidase KatG {Burkholderia pseudomalle 99.66
d1itka2308 Catalase-peroxidase KatG {Archaeon Haloarcula mari 99.62
d1itka1406 Catalase-peroxidase KatG {Archaeon Haloarcula mari 99.61
d1mwva1406 Catalase-peroxidase KatG {Burkholderia pseudomalle 99.57
d2ccaa1410 Catalase-peroxidase KatG {Mycobacterium tuberculos 99.51
d1ub2a1406 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 99.39
d2ccaa2285 Catalase-peroxidase KatG {Mycobacterium tuberculos 99.01
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

Probab=100.00  E-value=1.2e-59  Score=402.57  Aligned_cols=176  Identities=33%  Similarity=0.606  Sum_probs=165.3

Q ss_pred             CCCcCcchhhhhhhcccceecC----------------------------------------------------------
Q 038804            1 MKDKGVAAGLLRMHFRDCFVRS----------------------------------------------------------   22 (184)
Q Consensus         1 ~~d~~~~a~llrl~fhDcfv~g----------------------------------------------------------   22 (184)
                      ++||++||+|||||||||||+|                                                          
T Consensus        27 ~~d~~~aa~llRL~FHDCfv~GCDgSill~~~~~~~~E~~~~~N~~~~~g~~~id~iK~~le~~cp~~VScADIlalAar  106 (304)
T d1fhfa_          27 FTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTIESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAE  106 (304)
T ss_dssp             SSCTTHHHHHHHHHHHHHTTTCSSSGGGCCCCSSCCCGGGSTTTTTTCCCHHHHHHHHHHHHTTSTTTSCHHHHHHHHHH
T ss_pred             HhCCchhHHHHHHHHHhhccCCCCeeEeecCCCCccccccCCcccccchhHHHHHHHHHHHHhhCCCccCHHHHHHHHHh
Confidence            4799999999999999999998                                                          


Q ss_pred             ------CCcceecCCCCccCCCCccccccCCCCCCCcChHHHHHHHHhcCCCccccccc---------------------
Q 038804           23 ------GGLGYDVPAGRRDGRASKASEATTNLPSPAFNAKQLTQSFAAKGLTQEDMLIQ---------------------   75 (184)
Q Consensus        23 ------GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~kGl~~~d~VaL---------------------   75 (184)
                            |||.|+|++||+|+++|++.++..+||.|+.++++|++.|++|||+.+|||||                     
T Consensus       107 dAv~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaLsGaHTiG~ahc~~~~~rl~~~  186 (304)
T d1fhfa_         107 IASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFINRLYNF  186 (304)
T ss_dssp             HHHHTTTCCCCCCCBCCCBCSCCCHHHHHHHSCCTTCCHHHHHHHHHHTTCCHHHHHHHGGGGGSCEEEGGGTGGGTSCG
T ss_pred             hhhhhcCCCcccccCCCcCcCccccccccccCCCCCCCHHHHHHHHHHcCCCHHHHHHHhhhhhhcccccccccccccCC
Confidence                  99999999999999999988888899999999999999999999999999999                     


Q ss_pred             -------CCCCHHHHHHhhccCCCCCCCCCCccCCCCCCCC-CchhhhHHHHHhcCCCcccccchHHHHh------hhhH
Q 038804           76 -------FQWKPMCAVDLKRKCPKGNNNSNLVVPMNPASPS-IKTTMSVTMLIFYATEGTLLQTKLCLLT------QQHR  141 (184)
Q Consensus        76 -------~~~~~~~~~~l~~~Cp~~~~~~~~~~~~D~~Tp~-FDn~Yy~~ll~~~~~~~glL~SD~~L~~------~~~V  141 (184)
                             |++++.|+..|+..||..+. ....+.+|+.||. |||+||++++   .++ |+|+|||+|+.      +++|
T Consensus       187 ~~~~~~d~~~~~~~~~~L~~~c~~~~~-~~~~~~~d~~tp~~fDn~Yy~~l~---~~~-glL~SD~~L~~dp~~~t~~~V  261 (304)
T d1fhfa_         187 SNTGNPDPTLNTTYLEVLRARCPQNAT-GDNLTNLDLSTPDQFDNRYYSNLL---QLN-GLLQSDQELFSTPGADTIPIV  261 (304)
T ss_dssp             GGSSSCCTTSCHHHHHHHHHHSCSSCS-SCCEEESCSSSTTSCSTHHHHHHH---TTC-CSSHHHHTTTSSTTCSSHHHH
T ss_pred             CCCCCCCcccCHHHHHHHHHhcCCCCC-CCcccccCCCCCCccccHHHHHHh---hcC-cccHhhHHHHhCCCchHHHHH
Confidence                   56889999999999997654 4567889999999 9999999999   999 99999999986      5788


Q ss_pred             H---hhHHHHHHHHHHHHHHhccCCCCCCCCCccccccccccC
Q 038804          142 I---ELKTIWGNKFVAAMVRMGPIGVVTGQAGEIRANCRVINS  181 (184)
Q Consensus       142 ~---~d~~~F~~~F~~am~Km~~igv~tg~~GeiR~~C~~~N~  181 (184)
                      +   .||+.|+++|++||+|||+|+|+||.+||||++|+++|.
T Consensus       262 ~~yA~d~~~F~~~F~~Am~Km~~lgv~tg~~GeiR~~C~~~N~  304 (304)
T d1fhfa_         262 NSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNFVNG  304 (304)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHTTTTCCCTTSSBCCSBTTBCCC
T ss_pred             HHHhhCHHHHHHHHHHHHHHHhcCCCCCCCCCcccCcccCcCC
Confidence            7   899999999999999999999999999999999999995
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure