Citrus Sinensis ID: 038812

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80----
Protein Sequence
MRYSQPLPVAGATAAGAAAAAAAAAAAVSPSPSNIPREVQTVMGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHccccHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mrysqplpvagATAAGAAAAAAAAAAavspspsnipreVQTVMGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY
Flexible Loop (DISEMBL)
MRYSQPLPVAGATAAGAAAAAAAAAaavspspsniPREVQTVMGRRILNDALRAIVNAErrgkatvelqpistvmssflnimky
Low Complexity Region (SEG)
MRYSQPLPVagataagaaaaaaaaaaaVSPSPSNIPREVQTVMGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY
Disordered region (IsUnstruct)
****************************************TVMGRRILNDALRAIVNAERRGKATVELQPISTVMS*F******
Disordered Region (DISOPRED)
*****PL*VAGATAAGAAAAAA****************VQTVMGRRILNDALRAIVNA**RG****ELQPISTVMSSFLNIMKY
Disordered Region (DISEMBL)
********************************SNIPREVQTVMGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY
Disordered Region (DISPRO)
********************************SNIPREVQTVMGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRYSQPLPVAGATAAGAAAAAAAAAAAVSPSPSNIPREVQTVMGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	84	2.2.26 [Sep-21-2011]
Q9M0E0	129	40S ribosomal protein S15	yes	no	0.488	0.317	0.902	1e-14
O82205	129	40S ribosomal protein S15	no	no	0.488	0.317	0.853	3e-14
P46793	130	40S ribosomal protein S15	yes	no	0.428	0.276	0.527	0.0008

>sp|Q9M0E0|R15A5_ARATH 40S ribosomal protein S15a-5 OS=Arabidopsis thaliana GN=RPS15AE PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/41 (90%), Positives = 39/41 (95%)

Query: 43 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
          MGRRILNDALR IVNAERRGKA+VEL+PISTVMSSFL IMK
Sbjct: 1  MGRRILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMK 41

Arabidopsis thaliana (taxid: 3702)

>sp|O82205|R15A2_ARATH 40S ribosomal protein S15a-2 OS=Arabidopsis thaliana GN=RPS15AB PE=2 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/41 (85%), Positives = 39/41 (95%)

Query: 43 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
          MGRRILNDALR IVNAE+RGKA+VEL+P+STVMSSFL IMK
Sbjct: 1  MGRRILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMK 41

Arabidopsis thaliana (taxid: 3702)

>sp|P46793|RS15A_DICDI 40S ribosomal protein S15a OS=Dictyostelium discoideum GN=rps15a PE=2 SV=3

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 26/36 (72%)

Query: 47 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIM 82
          +LND L +IVNAER+GK  V ++P S V+  FL +M
Sbjct: 6  VLNDCLNSIVNAERQGKRQVLVRPSSKVIVKFLEVM 41

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
15233571	129	40S ribosomal protein S15a-5 [Arabidopsi	0.488	0.317	0.902	4e-13
356513207	129	PREDICTED: 40S ribosomal protein S15a-5-	0.5	0.325	0.857	5e-13
351725661	129	uncharacterized protein LOC100306361 [Gl	0.5	0.325	0.833	9e-13
224105963	129	predicted protein [Populus trichocarpa]	0.488	0.317	0.902	1e-12
255546217	129	30S ribosomal protein S8, putative [Rici	0.488	0.317	0.878	1e-12
15224834	129	40S ribosomal protein S15a-2 [Arabidopsi	0.488	0.317	0.853	1e-12
297832184	129	RPS15AB [Arabidopsis lyrata subsp. lyrat	0.488	0.317	0.853	1e-12
388522701	129	unknown [Lotus japonicus]	0.488	0.317	0.853	5e-12
357520733	129	40S ribosomal protein S15a-5 [Medicago t	0.5	0.325	0.785	1e-11
357520735	99	40S ribosomal protein S15a-5 [Medicago t	0.5	0.424	0.785	1e-11

>gi|15233571|ref|NP_194672.1| 40S ribosomal protein S15a-5 [Arabidopsis thaliana] gi|297803094|ref|XP_002869431.1| RPS15AE [Arabidopsis lyrata subsp. lyrata] gi|75311751|sp|Q9M0E0.1|R15A5_ARATH RecName: Full=40S ribosomal protein S15a-5 gi|7269842|emb|CAB79701.1| ribosomal protein S15a homolog [Arabidopsis thaliana] gi|21553914|gb|AAM62997.1| ribosomal protein S15a homolog [Arabidopsis thaliana] gi|110737866|dbj|BAF00871.1| ribosomal protein S15a homolog [Arabidopsis thaliana] gi|111074474|gb|ABH04610.1| At4g29430 [Arabidopsis thaliana] gi|297315267|gb|EFH45690.1| RPS15AE [Arabidopsis lyrata subsp. lyrata] gi|332660230|gb|AEE85630.1| 40S ribosomal protein S15a-5 [Arabidopsis thaliana]

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/41 (90%), Positives = 39/41 (95%)

Query: 43 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
          MGRRILNDALR IVNAERRGKA+VEL+PISTVMSSFL IMK
Sbjct: 1  MGRRILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMK 41

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513207|ref|XP_003525305.1| PREDICTED: 40S ribosomal protein S15a-5-like [Glycine max]

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 40/42 (95%)

Query: 43 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY 84
          MGRRILNDALR++VNAERRGKA VEL+PISTVMSSFL IMK+
Sbjct: 1  MGRRILNDALRSMVNAERRGKALVELKPISTVMSSFLQIMKH 42

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725661|ref|NP_001237612.1| uncharacterized protein LOC100306361 [Glycine max] gi|255628301|gb|ACU14495.1| unknown [Glycine max]

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/42 (83%), Positives = 40/42 (95%)

Query: 43 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY 84
          MGRRILNDALR++VNAERRGK+ VEL+PISTVMSSFL IMK+
Sbjct: 1  MGRRILNDALRSMVNAERRGKSMVELKPISTVMSSFLQIMKH 42

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105963|ref|XP_002313996.1| predicted protein [Populus trichocarpa] gi|224105965|ref|XP_002313997.1| predicted protein [Populus trichocarpa] gi|224150061|ref|XP_002336903.1| predicted protein [Populus trichocarpa] gi|224150848|ref|XP_002337022.1| predicted protein [Populus trichocarpa] gi|118484699|gb|ABK94220.1| unknown [Populus trichocarpa] gi|222837094|gb|EEE75473.1| predicted protein [Populus trichocarpa] gi|222837844|gb|EEE76209.1| predicted protein [Populus trichocarpa] gi|222850404|gb|EEE87951.1| predicted protein [Populus trichocarpa] gi|222850405|gb|EEE87952.1| predicted protein [Populus trichocarpa]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/41 (90%), Positives = 38/41 (92%)

Query: 43 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
          MGRRILNDALRAIVNAERR K+TVELQPISTV SSFL IMK
Sbjct: 1  MGRRILNDALRAIVNAERRSKSTVELQPISTVTSSFLKIMK 41

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546217|ref|XP_002514168.1| 30S ribosomal protein S8, putative [Ricinus communis] gi|223546624|gb|EEF48122.1| 30S ribosomal protein S8, putative [Ricinus communis]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/41 (87%), Positives = 38/41 (92%)

Query: 43 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
          MGRRILNDALRA+VNAERRGK  V+LQPISTVMSSFL IMK
Sbjct: 1  MGRRILNDALRAMVNAERRGKDRVQLQPISTVMSSFLKIMK 41

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224834|ref|NP_179562.1| 40S ribosomal protein S15a-2 [Arabidopsis thaliana] gi|75279062|sp|O82205.1|R15A2_ARATH RecName: Full=40S ribosomal protein S15a-2 gi|3687245|gb|AAC62143.1| 40S ribosomal protein S15A [Arabidopsis thaliana] gi|48310079|gb|AAT41749.1| At2g19720 [Arabidopsis thaliana] gi|50198839|gb|AAT70450.1| At2g19720 [Arabidopsis thaliana] gi|330251823|gb|AEC06917.1| 40S ribosomal protein S15a-2 [Arabidopsis thaliana]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/41 (85%), Positives = 39/41 (95%)

Query: 43 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
          MGRRILNDALR IVNAE+RGKA+VEL+P+STVMSSFL IMK
Sbjct: 1  MGRRILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMK 41

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832184|ref|XP_002883974.1| RPS15AB [Arabidopsis lyrata subsp. lyrata] gi|297329814|gb|EFH60233.1| RPS15AB [Arabidopsis lyrata subsp. lyrata]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/41 (85%), Positives = 39/41 (95%)

Query: 43 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
          MGRRILNDALR IVNAE+RGKA+VEL+P+STVMSSFL IMK
Sbjct: 1  MGRRILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMK 41

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522701|gb|AFK49412.1| unknown [Lotus japonicus]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/41 (85%), Positives = 39/41 (95%)

Query: 43 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
          MGRRILNDALR++VNAERRGKA VEL+PISTV+SSFL IMK
Sbjct: 1  MGRRILNDALRSMVNAERRGKAAVELKPISTVISSFLQIMK 41

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520733|ref|XP_003630655.1| 40S ribosomal protein S15a-5 [Medicago truncatula] gi|217071420|gb|ACJ84070.1| unknown [Medicago truncatula] gi|355524677|gb|AET05131.1| 40S ribosomal protein S15a-5 [Medicago truncatula] gi|388507250|gb|AFK41691.1| unknown [Medicago truncatula]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/42 (78%), Positives = 40/42 (95%)

Query: 43 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY 84
          MGRRILNDALR++VNAE+RGKA VEL+PIS V+SSFL+IMK+
Sbjct: 1  MGRRILNDALRSMVNAEKRGKAMVELKPISNVISSFLHIMKH 42

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520735|ref|XP_003630656.1| 40S ribosomal protein S15a-5 [Medicago truncatula] gi|355524678|gb|AET05132.1| 40S ribosomal protein S15a-5 [Medicago truncatula]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/42 (78%), Positives = 40/42 (95%)

Query: 43 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY 84
          MGRRILNDALR++VNAE+RGKA VEL+PIS V+SSFL+IMK+
Sbjct: 1  MGRRILNDALRSMVNAEKRGKAMVELKPISNVISSFLHIMKH 42

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
TAIR|locus:2118319	129	rps15ae "ribosomal protein S15	0.488	0.317	0.902	1e-13
TAIR|locus:2052025	129	rps15ab "ribosomal protein S15	0.488	0.317	0.853	2.7e-13
DICTYBASE|DDB_G0276457	130	rps15a "40S ribosomal protein	0.428	0.276	0.527	8.1e-05
TAIR|locus:2026525	130	RPS15A "ribosomal protein S15A	0.440	0.284	0.486	0.0001
TAIR|locus:2168118	130	AT5G59850 [Arabidopsis thalian	0.440	0.284	0.486	0.0001
ASPGD|ASPL0000054689	130	AN0907 [Emericella nidulans (t	0.440	0.284	0.513	0.00013
UNIPROTKB|F1NXW3	136	RPS15A "Uncharacterized protei	0.5	0.308	0.452	0.00017
FB|FBgn0010198	130	RpS15Aa "Ribosomal protein S15	0.428	0.276	0.527	0.00027
FB|FBgn0033555	130	RpS15Ab "Ribosomal protein S15	0.428	0.276	0.527	0.00027
TAIR|locus:2075231	130	RPS15AD "ribosomal protein S15	0.440	0.284	0.459	0.00027

TAIR|locus:2118319 rps15ae "ribosomal protein S15A E" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 37/41 (90%), Positives = 39/41 (95%)

Query:    43 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
             MGRRILNDALR IVNAERRGKA+VEL+PISTVMSSFL IMK
Sbjct:     1 MGRRILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMK 41

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

TAIR|locus:2052025 rps15ab "ribosomal protein S15A B" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 35/41 (85%), Positives = 39/41 (95%)

Query:    43 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
             MGRRILNDALR IVNAE+RGKA+VEL+P+STVMSSFL IMK
Sbjct:     1 MGRRILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMK 41

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

DICTYBASE|DDB_G0276457 rps15a "40S ribosomal protein S15a" [Dictyostelium discoideum (taxid:44689)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 19/36 (52%), Positives = 26/36 (72%)

Query:    47 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIM 82
             +LND L +IVNAER+GK  V ++P S V+  FL +M
Sbjct:     6 VLNDCLNSIVNAERQGKRQVLVRPSSKVIVKFLEVM 41

GO:0005615 "extracellular space" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2026525 RPS15A "ribosomal protein S15A" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 18/37 (48%), Positives = 28/37 (75%)

Query:    47 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
             +LNDAL+++ NAE+RGK  V ++P S V+  FL +M+
Sbjct:     6 VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQ 42

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=ISS;IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2168118 AT5G59850 [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 18/37 (48%), Positives = 28/37 (75%)

Query:    47 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
             +LNDAL+++ NAE+RGK  V ++P S V+  FL +M+
Sbjct:     6 VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQ 42

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0005618 "cell wall" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

ASPGD|ASPL0000054689 AN0907 [Emericella nidulans (taxid:162425)]

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 19/37 (51%), Positives = 27/37 (72%)

Query:    47 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
             +LNDAL AI NAE+ GK  V ++P S V+  FL++M+
Sbjct:     6 VLNDALNAINNAEKAGKRQVLIRPSSKVIIKFLSVMQ 42

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

UNIPROTKB|F1NXW3 RPS15A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query:    41 TVMGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIM 82
             T++   +L DAL++I NAE+RGK  V ++P S V+  FL +M
Sbjct:     6 TMVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVM 47

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0045787 "positive regulation of cell cycle" evidence=IEA

FB|FBgn0010198 RpS15Aa "Ribosomal protein S15Aa" [Drosophila melanogaster (taxid:7227)]

 Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query:    47 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIM 82
             +L DAL+ I NAE+RGK  V L+P S V+  FL +M
Sbjct:     6 VLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVM 41

GO:0006412 "translation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0005840 "ribosome" evidence=IDA;NAS

GO:0005811 "lipid particle" evidence=IDA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0000022 "mitotic spindle elongation" evidence=IMP

FB|FBgn0033555 RpS15Ab "Ribosomal protein S15Ab" [Drosophila melanogaster (taxid:7227)]

 Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query:    47 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIM 82
             +L DAL+ I NAE+RGK  V L+P S V+  FL +M
Sbjct:     6 VLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVM 41

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

TAIR|locus:2075231 RPS15AD "ribosomal protein S15A D" [Arabidopsis thaliana (taxid:3702)]

 Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 17/37 (45%), Positives = 27/37 (72%)

Query:    47 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
             +LND L+++ NAE+RGK  V ++P S V+  FL +M+
Sbjct:     6 VLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQ 42

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M0E0	R15A5_ARATH	No assigned EC number	0.9024	0.4880	0.3178	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.7__1248__AT4G29430.1	annotation not avaliable (129 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.8__2660__AT5G67510.1	annotation not avaliable (146 aa)	•			•					0.510
	scaffold_603399.1	annotation not avaliable (194 aa)	•			•			•		0.482
	scaffold_502012.1	annotation not avaliable (146 aa)	•			•					0.455
	fgenesh2_kg.1__3446__AT1G33140.1	annotation not avaliable (194 aa)	•			•					0.438
	fgenesh2_kg.1__3924__AT1G48350.1	annotation not avaliable (170 aa)	•						•		0.433
	fgenesh2_kg.2__971__AT1G67430.1	annotation not avaliable (175 aa)	•			•					0.415
	fgenesh2_kg.1__2897__AT1G27400.1	annotation not avaliable (176 aa)	•			•					0.412

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	84
PLN00146	130	PLN00146, PLN00146, 40S ribosomal protein S15a; Pr	4e-21
PTZ00158	130	PTZ00158, PTZ00158, 40S ribosomal protein S15A; Pr	3e-10
PRK04034	130	PRK04034, rps8p, 30S ribosomal protein S8P; Review	4e-06
pfam00410	129	pfam00410, Ribosomal_S8, Ribosomal protein S8	5e-05
COG0096	132	COG0096, RpsH, Ribosomal protein S8 [Translation,	0.003

>gnl|CDD|215075 PLN00146, PLN00146, 40S ribosomal protein S15a; Provisional

 Score = 80.0 bits (198), Expect = 4e-21
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 43 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
          + R +LNDAL+ + NAE+RGK  V ++P S V+  FL +M+
Sbjct: 2  VRRSVLNDALKTMYNAEKRGKRQVLIRPSSKVVIKFLKVMQ 42

Length = 130

>gnl|CDD|185487 PTZ00158, PTZ00158, 40S ribosomal protein S15A; Provisional

 Score = 52.4 bits (126), Expect = 3e-10
 Identities = 18/37 (48%), Positives = 27/37 (72%)

Query: 47 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
          +L D LR+IVNAE++GK  V ++P S V+  FL +M+
Sbjct: 6  VLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQ 42

Length = 130

>gnl|CDD|179721 PRK04034, rps8p, 30S ribosomal protein S8P; Reviewed

 Score = 41.4 bits (98), Expect = 4e-06
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 42 VMGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
          ++    L +AL  I NAE  GK  V ++P S ++ + L +M+
Sbjct: 1  MVLLDPLANALSTIKNAEMVGKKEVIIKPASKLIGNVLRVMQ 42

Length = 130

>gnl|CDD|215906 pfam00410, Ribosomal_S8, Ribosomal protein S8

 Score = 38.2 bits (90), Expect = 5e-05
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 48 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
          + D L  I NA+   K TV + P S +  S L I+K
Sbjct: 3  IADMLTRIRNAQMAKKETVLI-PASKLKISILKILK 37

Length = 129

>gnl|CDD|223174 COG0096, RpsH, Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]

 Score = 33.7 bits (78), Expect = 0.003
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 47 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
           L D L  I NAER  K  V + P S +  + L ++K
Sbjct: 6  PLADMLTRIRNAERAKKEVVSM-PASKLKGAILKVLK 41

Length = 132

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	84
COG0096	132	RpsH Ribosomal protein S8 [Translation, ribosomal	99.52
KOG1754	130	consensus 40S ribosomal protein S15/S22 [Translati	99.5
PTZ00158	130	40S ribosomal protein S15A; Provisional	99.46
PLN00146	130	40S ribosomal protein S15a; Provisional	99.41
CHL00042	132	rps8 ribosomal protein S8	99.38
PRK04034	130	rps8p 30S ribosomal protein S8P; Reviewed	99.35
PRK00136	130	rpsH 30S ribosomal protein S8; Validated	99.23
PF00410	129	Ribosomal_S8: Ribosomal protein S8; InterPro: IPR0	99.09

>COG0096 RpsH Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=9.5e-15  Score=103.91  Aligned_cols=41  Identities=37%  Similarity=0.451  Sum_probs=37.0

Q ss_pred             hcc-cHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812           43 MGR-RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY   84 (84)
Q Consensus        43 Msm-DpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~   84 (84)
                      |+| ||||||||+||||++++|..|.+ |+||++.+||+|||+
T Consensus         1 m~~~DpiAdmltrIrNa~~~~~~~v~~-P~SKl~~~il~vLk~   42 (132)
T COG0096           1 MMMTDPLADMLTRIRNAERAKKEVVSM-PASKLKGAILKVLKK   42 (132)
T ss_pred             CccccHHHHHHHHhHhHHHhccceeec-chHHHHHHHHHHHHH
Confidence            777 99999999999999996666665 999999999999985

>KOG1754 consensus 40S ribosomal protein S15/S22 [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=1.8e-14  Score=103.01  Aligned_cols=42  Identities=48%  Similarity=0.700  Sum_probs=40.0

Q ss_pred             hcc-cHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812           43 MGR-RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY   84 (84)
Q Consensus        43 Msm-DpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~   84 (84)
                      |++ |.|+|+|++|+||+++||.||+|+||||++++||.||++
T Consensus         1 m~~~~vLaDalksinNA~krGK~qvlirp~Skvii~FL~vmmk   43 (130)
T KOG1754|consen    1 MVRMNVLADALKSINNAEKRGKRQVLIRPSSKVIIRFLTVMMK   43 (130)
T ss_pred             CchHHHHHHHHHHhhhHHhcCCceEEecccHHHHHHHHHHHHH
Confidence            566 999999999999999999999999999999999999975

>PTZ00158 40S ribosomal protein S15A; Provisional

Probab=99.46  E-value=6.1e-14  Score=98.78  Aligned_cols=42  Identities=48%  Similarity=0.742  Sum_probs=40.1

Q ss_pred             hcc-cHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812           43 MGR-RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY   84 (84)
Q Consensus        43 Msm-DpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~   84 (84)
                      |++ |||+||||+||||++++|++|.+.|+||++.+||++|++
T Consensus         1 m~~~~~iadmlt~IrNa~~~~~~~V~v~p~Skl~~~il~IL~~   43 (130)
T PTZ00158          1 MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQK   43 (130)
T ss_pred             CCcccHHHHHHHhhhhHHhCCCCeEEEeCCcHHHHHHHHHHHH
Confidence            776 999999999999999999999988999999999999985

>PLN00146 40S ribosomal protein S15a; Provisional

Probab=99.41  E-value=2.4e-13  Score=94.83  Aligned_cols=42  Identities=48%  Similarity=0.742  Sum_probs=39.0

Q ss_pred             hcc-cHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812           43 MGR-RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY   84 (84)
Q Consensus        43 Msm-DpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~   84 (84)
                      |++ |||+||||+||||++++|++|.+.|+||++.+|+++|++
T Consensus         1 m~~~~~iad~lt~IrNa~~a~~~~v~~~p~Skl~~~il~iL~~   43 (130)
T PLN00146          1 MVRRSVLNDALKTMYNAEKRGKRQVLIRPSSKVVIKFLKVMQK   43 (130)
T ss_pred             CCCcChHHHHHHHhHhHHHcCCCeEEEEcChHHHHHHHHHHHH
Confidence            677 999999999999999999999744999999999999985

>CHL00042 rps8 ribosomal protein S8

Probab=99.38  E-value=5.1e-13  Score=93.14  Aligned_cols=41  Identities=29%  Similarity=0.456  Sum_probs=38.3

Q ss_pred             hcccHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812           43 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY   84 (84)
Q Consensus        43 MsmDpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~   84 (84)
                      |..|||+|+|++||||++++|.+|.+ |+||++.+||++|++
T Consensus         1 m~~d~iad~lt~IrNa~~a~~~~v~i-p~Skl~~~il~iL~~   41 (132)
T CHL00042          1 MGNDTIADMLTRIRNANMVKKGTVRI-PATNITENIVKILLR   41 (132)
T ss_pred             CCcchHHHHHHHhHHHHHCCCCEEEE-eccHHHHHHHHHHHH
Confidence            43399999999999999999999999 999999999999975

>PRK04034 rps8p 30S ribosomal protein S8P; Reviewed

Probab=99.35  E-value=1.1e-12  Score=91.05  Aligned_cols=42  Identities=36%  Similarity=0.449  Sum_probs=38.7

Q ss_pred             hcc-cHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812           43 MGR-RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY   84 (84)
Q Consensus        43 Msm-DpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~   84 (84)
                      |++ |||+|+||+||||++++|++|.+.|+||++.+||++|++
T Consensus         1 m~~~d~iad~lt~IrNa~~a~~~~v~~~p~Sk~~~~il~iL~~   43 (130)
T PRK04034          1 MVLLDPLANALSTIKNAEMVGKKEVIIKPASKLIGNVLRVMQD   43 (130)
T ss_pred             CCcccHHHHHHHHhHhHHHcCCceEEEEcccHHHHHHHHHHHH
Confidence            666 999999999999999999998744999999999999975

>PRK00136 rpsH 30S ribosomal protein S8; Validated

Probab=99.23  E-value=1.1e-11  Score=85.77  Aligned_cols=41  Identities=27%  Similarity=0.289  Sum_probs=38.0

Q ss_pred             hcccHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812           43 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY   84 (84)
Q Consensus        43 MsmDpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~   84 (84)
                      |..|||+|+|++|+||+++||.+|.+ |+||+..+||++|++
T Consensus         1 m~~d~i~d~lt~IrNa~~~~~~~v~i-p~sk~~~~il~iL~~   41 (130)
T PRK00136          1 SMTDPIADMLTRIRNAQMAKHETVSM-PASKLKVAIAEILKE   41 (130)
T ss_pred             CCcChHHHHHHHHHHHHHcCCCeEEe-cccHHHHHHHHHHHH
Confidence            43399999999999999999999998 999999999999974

>PF00410 Ribosomal_S8: Ribosomal protein S8; InterPro: IPR000630 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.09  E-value=1.1e-10  Score=79.99  Aligned_cols=38  Identities=39%  Similarity=0.400  Sum_probs=36.9

Q ss_pred             cHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812           46 RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY   84 (84)
Q Consensus        46 DpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~   84 (84)
                      |||+|+|++|+||++++|.+|.+ |+||++.+||++|++
T Consensus         1 D~lad~l~~I~Na~~~~~~~v~i-p~sk~~~~il~iL~~   38 (129)
T PF00410_consen    1 DPLADLLTRIRNASRARKRFVII-PYSKLNLSILKILKK   38 (129)
T ss_dssp             SHHHHHHHHHHHHHHTTCSEEEE-EHCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHhHHHHHCCCCEEEe-cccHHHHHHHHHHhh
Confidence            89999999999999999999999 999999999999974

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S8 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S8 is known to bind directly to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups eubacterial, algal and plant chloroplast, cyanelle, archaebacterial and Marchantia polymorpha mitochondrial S8; mammalian and plant S15A; and yeast S22 (S24) ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1S1H_H 3O30_O 3O2Z_O 3IZB_H 3U5G_W 3U5C_W 3OTO_H 1AN7_A 2HGR_K 3BBN_H ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	84
3iz6_H	130	Localization Of The Small Subunit Ribosomal Protein		4e-04
2zkq_h	130	Structure Of A Mammalian Ribosomal 40s Subunit With		6e-04

>pdb|3IZ6|H Chain H, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 130

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 47 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
          +LNDAL+ + NAE+RGK  V ++P S V+  FL +M+
Sbjct: 6  VLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQ 42

>pdb|2ZKQ|HH Chain h, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 130

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 47 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIM 82
          +L DAL++I NAE+RGK  V ++P S V+  FL +M
Sbjct: 6  VLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVM 41

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	84
3u5c_W	130	40S ribosomal protein S22-A; translation, ribosome	4e-09
2xzm_H	130	Ribosomal protein S8 containing protein; ribosome,	5e-09
1i6u_A	130	30S ribosomal protein S8P; protein-RNA interaction	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>3u5c_W 40S ribosomal protein S22-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_H 3o30_O 3o2z_O 3u5g_W 1s1h_H 3jyv_H* 3iz6_H 2zkq_h Length = 130

 Score = 48.7 bits (117), Expect = 4e-09
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 48 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
          L DAL AI NAE+ GK  V ++P S V+  FL +M+
Sbjct: 7  LADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQ 42

>2xzm_H Ribosomal protein S8 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_H Length = 130

 Score = 48.3 bits (116), Expect = 5e-09
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query: 47 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
          IL + L+ +VNAE+ GK  V L+P+S V+  FL IM+
Sbjct: 6  ILAECLKDLVNAEKMGKKQVLLRPVSKVVLKFLRIMQ 42

>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} SCOP: d.140.1.1 Length = 130

 Score = 44.0 bits (105), Expect = 2e-07
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 48 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
          L +AL  I N ER GK  V ++P S ++   L +M+
Sbjct: 7  LANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQ 42

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 36.4 bits (83), Expect = 4e-04
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 13/66 (19%)

Query: 25  AAAVSPSPSNIPREVQTVMGRRILNDALRAIVNAE-RRGKAT------VELQPISTVMSS 77
              +   P ++PREV T   RR+      +I+    R G AT      V    ++T++ S
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRL------SIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 78  FLNIMK 83
            LN+++
Sbjct: 362 SLNVLE 367

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	84
2xzm_H	130	Ribosomal protein S8 containing protein; ribosome,	99.61
1i6u_A	130	30S ribosomal protein S8P; protein-RNA interaction	99.6
3u5c_W	130	40S ribosomal protein S22-A; translation, ribosome	99.55
3bbn_H	134	Ribosomal protein S8; small ribosomal subunit, spi	99.47
1sei_A	130	Ribosomal protein S8; prokaryotic, rRNA-binding; 1	99.46
1s03_H	129	30S ribosomal protein S8; protein-RNA complex, SPC	99.45
2vqe_H	138	30S ribosomal protein S8, 30S ribosomal protein S6	99.45
3rf2_A	168	30S ribosomal protein S8; RNA-binding protein, hyp	99.38

>2xzm_H Ribosomal protein S8 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_H

Probab=99.61  E-value=4.2e-16  Score=107.85  Aligned_cols=42  Identities=45%  Similarity=0.705  Sum_probs=39.7

Q ss_pred             hcc-cHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812           43 MGR-RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY   84 (84)
Q Consensus        43 Msm-DpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~   84 (84)
                      |++ ||||||||+||||+++||.+|.|+|+||++.+|+++|++
T Consensus         1 M~~~d~iad~lt~IrNA~~~~~~~V~i~P~Sk~~~~il~iL~~   43 (130)
T 2xzm_H            1 MVKVNILAECLKDLVNAEKMGKKQVLLRPVSKVVLKFLRIMQK   43 (130)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHTCSEEEECSCCHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHhHHHHHcCCCEEEEEcchHHHHHHHHHHHH
Confidence            777 999999999999999999999999999999999999984

>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} SCOP: d.140.1.1

Probab=99.60  E-value=5.9e-16  Score=106.97  Aligned_cols=42  Identities=36%  Similarity=0.509  Sum_probs=39.7

Q ss_pred             hcc-cHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812           43 MGR-RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY   84 (84)
Q Consensus        43 Msm-DpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~   84 (84)
                      |++ |||+||||+||||+++||.+|.|+|+||++.+||++|++
T Consensus         1 M~~~d~iad~lt~IrNA~~~~~~~V~i~P~Sk~~~~il~iL~~   43 (130)
T 1i6u_A            1 MSLMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQD   43 (130)
T ss_dssp             -CCCCHHHHHHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHhHHHHHcCCCEEEEECchHHHHHHHHHHHH
Confidence            777 999999999999999999999999999999999999984

>3u5c_W 40S ribosomal protein S22-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_H 3o30_O 3o2z_O 3u5g_W 1s1h_H 3jyv_H* 3iz6_H 2zkq_h

Probab=99.55  E-value=4.1e-15  Score=102.73  Aligned_cols=42  Identities=48%  Similarity=0.693  Sum_probs=39.6

Q ss_pred             hcc-cHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812           43 MGR-RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY   84 (84)
Q Consensus        43 Msm-DpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~   84 (84)
                      |++ ||||||||+||||+++||++|.++|+||++.+|+++|++
T Consensus         1 m~~~d~iad~lt~IrNA~~~~~~~v~i~P~Sk~~~~il~iL~~   43 (130)
T 3u5c_W            1 MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQK   43 (130)
T ss_dssp             -CCCCHHHHHHHHHHHHHHTTCSEEEECSCCHHHHHHHHHHHT
T ss_pred             CCcccHHHHHHHHhHHHHHcCCceEEEecCCHHHHHHHHHHHH
Confidence            777 999999999999999999999999999999999999985

>3bbn_H Ribosomal protein S8; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.47  E-value=3.4e-14  Score=98.99  Aligned_cols=41  Identities=24%  Similarity=0.424  Sum_probs=38.4

Q ss_pred             hcccHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812           43 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY   84 (84)
Q Consensus        43 MsmDpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~   84 (84)
                      |.+|||+||||+||||++++|.+|.+ |+||++.+|+++|++
T Consensus         1 m~~d~iad~lt~IrNA~~~~k~~V~i-P~Sk~~~~il~iL~~   41 (134)
T 3bbn_H            1 MGKDTIADIITCIRNADMNRKGTVRI-VSTNITENIVKILLR   41 (134)
T ss_dssp             CCSCHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHTHHHHT
T ss_pred             CcccHHHHHHHHhHHHHHcCCCEEEE-eCcHHHHHHHHHHHH
Confidence            43399999999999999999999999 999999999999985

>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} SCOP: d.140.1.1

Probab=99.46  E-value=3.7e-14  Score=98.10  Aligned_cols=38  Identities=29%  Similarity=0.368  Sum_probs=37.1

Q ss_pred             cHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812           46 RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY   84 (84)
Q Consensus        46 DpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~   84 (84)
                      ||||||||+||||++++|.+|.+ |+||++.+||++|++
T Consensus         4 d~iad~lt~IrNA~~~~~~~v~i-P~Sk~~~~il~iL~~   41 (130)
T 1sei_A            4 DPIADMLTAIRNANMVRHEKLEV-PASKIKREIAEILKR   41 (130)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhHHHHHcCCCEEEe-cCcHHHHHHHHHHHH
Confidence            99999999999999999999999 999999999999984

>1s03_H 30S ribosomal protein S8; protein-RNA complex, SPC operon, transcription-RN; 2.70A {Escherichia coli} SCOP: d.140.1.1 PDB: 1p6g_H 1p87_H 2avy_H 2aw7_H 2i2p_H 2i2u_H 2qal_H* 2qan_H* 2qb9_H* 2qbb_H* 2qbd_H 2qbf_H 2qbh_H* 2qbj_H* 2qou_H* 2qow_H* 2qoy_H* 2qp0_H* 2vho_H 2vhp_H ...

Probab=99.45  E-value=4.5e-14  Score=97.56  Aligned_cols=38  Identities=29%  Similarity=0.395  Sum_probs=37.1

Q ss_pred             cHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812           46 RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY   84 (84)
Q Consensus        46 DpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~   84 (84)
                      |||+||||+||||++++|.+|.+ |+||++.+||++|++
T Consensus         4 d~iad~lt~IrNA~~~~~~~v~i-P~Sk~~~~il~iL~~   41 (129)
T 1s03_H            4 DPIADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKE   41 (129)
T ss_dssp             CHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhHHHHHcCCCEEEE-eCcHHHHHHHHHHHH
Confidence            99999999999999999999999 999999999999984

>2vqe_H 30S ribosomal protein S8, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.140.1.1 PDB: 1eg0_E* 1fka_H 1gix_K* 1hnw_H* 1hnx_H* 1hnz_H* 1hr0_H 1ibk_H* 1ibl_H* 1ibm_H 1j5e_H 1jgo_K* 1jgp_K* 1jgq_K* 1ml5_K* 1n32_H* 1n33_H* 1n34_H 1n36_H 1pns_H ...

Probab=99.45  E-value=3.4e-14  Score=99.41  Aligned_cols=41  Identities=29%  Similarity=0.329  Sum_probs=38.2

Q ss_pred             hcccHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812           43 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY   84 (84)
Q Consensus        43 MsmDpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~   84 (84)
                      |.+||||||||+||||++++|.+|.+ |+||++.+|+++|++
T Consensus         1 m~~d~iad~ltrIrNA~~~~k~~V~i-P~Sk~~~~il~iL~~   41 (138)
T 2vqe_H            1 MLTDPIADMLTRIRNATRVYKESTDV-PASRFKEEILRILAR   41 (138)
T ss_dssp             CCSCHHHHHHHHHHHHHHTTCSCCCC-BCCHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHhHHHHHcCCCEEEe-cCcHHHHHHHHHHHH
Confidence            43399999999999999999999999 999999999999984

>3rf2_A 30S ribosomal protein S8; RNA-binding protein, hyperthermophilic bacterium, ribosome; 2.16A {Aquifex aeolicus}

Probab=99.38  E-value=2.5e-13  Score=98.19  Aligned_cols=41  Identities=27%  Similarity=0.337  Sum_probs=37.0

Q ss_pred             hcc-cHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812           43 MGR-RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY   84 (84)
Q Consensus        43 Msm-DpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~   84 (84)
                      |++ |||||||++||||++++|.+|.| |+||++.+|+++|++
T Consensus         1 m~~~d~iad~lt~IrNA~~ar~~~v~i-P~Skl~~~i~~iL~~   42 (168)
T 3rf2_A            1 MSAVDPIADMFSAIKNAIMRRDDFLYV-PSSKLKERILDVLKK   42 (168)
T ss_dssp             ---CCHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHcCCCEEEe-cccHHHHHHHHHHHH
Confidence            777 99999999999999999999999 999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	84
d1i6ua_	129	d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Meth	1e-06
d1seia_	130	d.140.1.1 (A:) Ribosomal protein S8 {Bacillus stea	6e-05
d2gy9h1	126	d.140.1.1 (H:3-128) Ribosomal protein S8 {Escheric	1e-04
d1an7a_	136	d.140.1.1 (A:) Ribosomal protein S8 {Thermus therm	1e-04

>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 41.1 bits (96), Expect = 1e-06
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 48 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
          L +AL  I N ER GK  V ++P S ++   L +M+
Sbjct: 6  LANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQ 41

>d1seia_ d.140.1.1 (A:) Ribosomal protein S8 {Bacillus stearothermophilus [TaxId: 1422]} Length = 130

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 36.4 bits (84), Expect = 6e-05
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 48 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY 84
          + D L AI NA       +E+ P S +      I+K 
Sbjct: 6  IADMLTAIRNANMVRHEKLEV-PASKIKREIAEILKR 41

>d2gy9h1 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escherichia coli [TaxId: 562]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Escherichia coli [TaxId: 562]

 Score = 35.7 bits (82), Expect = 1e-04
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 48 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY 84
          + D L  I N +   KA V + P S +  +  N++K 
Sbjct: 4  IADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKE 39

>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus [TaxId: 274]} Length = 136

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Thermus thermophilus [TaxId: 274]

 Score = 35.8 bits (82), Expect = 1e-04
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 48 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMK 83
          + D L  I NA R  K + ++ P S      L I+ 
Sbjct: 4  IADMLTRIRNATRVYKESTDV-PASRFKEEILRILA 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	84
d1i6ua_	129	Ribosomal protein S8 {Archaeon Methanococcus janna	99.54
d1seia_	130	Ribosomal protein S8 {Bacillus stearothermophilus	99.52
d1an7a_	136	Ribosomal protein S8 {Thermus thermophilus [TaxId:	99.35
d2gy9h1	126	Ribosomal protein S8 {Escherichia coli [TaxId: 562	99.3

>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.54  E-value=1.9e-15  Score=102.34  Aligned_cols=41  Identities=34%  Similarity=0.486  Sum_probs=38.8

Q ss_pred             cc-cHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812           44 GR-RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY   84 (84)
Q Consensus        44 sm-DpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~   84 (84)
                      +| ||||||||+||||++++|++|.|.|+||++.+||++|++
T Consensus         1 sm~D~iaD~ltrIrNA~~~~~~~V~i~P~Skl~~~Il~iL~~   42 (129)
T d1i6ua_           1 SLMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQD   42 (129)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHH
Confidence            35 999999999999999999999999999999999999974

>d1seia_ d.140.1.1 (A:) Ribosomal protein S8 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.52  E-value=2.8e-15  Score=100.19  Aligned_cols=38  Identities=29%  Similarity=0.368  Sum_probs=37.0

Q ss_pred             cHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812           46 RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY   84 (84)
Q Consensus        46 DpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~   84 (84)
                      |||||+|++|+||+++||++|.+ |+||++.+||++|++
T Consensus         4 D~iaD~lt~IrNA~~a~k~~V~i-p~Skl~~~il~vL~~   41 (130)
T d1seia_           4 DPIADMLTAIRNANMVRHEKLEV-PASKIKREIAEILKR   41 (130)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCEEEe-cCcHHHHHHHHHHHH
Confidence            99999999999999999999999 999999999999984

>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Thermus thermophilus [TaxId: 274]

Probab=99.35  E-value=2.5e-13  Score=90.63  Aligned_cols=38  Identities=29%  Similarity=0.357  Sum_probs=36.9

Q ss_pred             cHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812           46 RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY   84 (84)
Q Consensus        46 DpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~   84 (84)
                      |||||||++|+||+++||.+|.+ |+||++.+||++|++
T Consensus         2 D~iaD~lt~IrNA~~~~k~~v~i-p~Skl~~~il~iL~~   39 (136)
T d1an7a_           2 DPIADMLTRIRNATRVYKESTDV-PASRFKEEILRILAR   39 (136)
T ss_dssp             CHHHHHHHHHHHHHTTTCSEEEE-ECCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHhHHHcCCCEEEe-cccHHHHHHHHHHHH
Confidence            99999999999999999999999 999999999999974

>d2gy9h1 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=5.4e-13  Score=89.01  Aligned_cols=38  Identities=29%  Similarity=0.395  Sum_probs=36.9

Q ss_pred             cHHHHHHHhhHhHHhhCCceeEEecccHHHHHHHHHhhC
Q 038812           46 RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKY   84 (84)
Q Consensus        46 DpLADaLTrIrNAerrGK~qV~I~PaSKL~i~IL~VLk~   84 (84)
                      |||||+|++|+||+++||.+|.+ |+||++.+||++|++
T Consensus         2 D~iaD~l~~I~NA~~~~k~~v~i-p~Skl~~~il~iL~~   39 (126)
T d2gy9h1           2 DPIADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKE   39 (126)
T ss_dssp             CHHHHHHHHHHHHHHTTCSEECC-BCCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHhHhHHHcCCCEEEe-eCcHHHHHHHHHHHh
Confidence            99999999999999999999999 999999999999974