Citrus Sinensis ID: 038845

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
MRSVLKVKPMEVMCSKIRGLITKMMMISMMMGCVSGTGTLHRVGGKLGWTPSVNFTEWSSHESFYVNDWLIFNFDKNMYNVLEVNKTSYESCNDKGFIKNITKGGRDVFQLTEPRPYYFLSGRGFCWGGLKAAIFVQETAPTPAPVQARNGSPSSTGSWIIALVMVAASISLTWSVL
cccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccccccEEEccEEEEEEccccccEEEEcHHHHccccccccccccccccccEEEccccccEEEEEcccccccccEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHcc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccHHHHHcccEEEEccEEEEEEccccccEEEEccccHHHcccccccHccccccccEEEEcccccEEEEEcccccccccEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHc
mrsvlkvkpmeVMCSKIRGLITKMMMISMMMGcvsgtgtlhrvggklgwtpsvnftewsshesfyvNDWLIFNFDKNMYNVLEVNktsyescndkgfiknitkggrdvfqlteprpyyflsgrgfcwGGLKAAIFVqetaptpapvqarngspsstgSWIIALVMVAASISLTWSVL
mrsvlkvkpmevmCSKIRGLITKMMMISMMMGCVSGTGTLHRVGGKLGWTPSVNFTEWSSHESFYVNDWLIFNFDKNMYNVLEVNKTSYESCNDKGFIKNITKGGRDVFQLTEPRPYYFLSGRGFCWGGLKAAIFVQETAPTPAPVQARNGSPSSTGSWIIALVMVAASISLTWSVL
MRSVLKVKPMEVMCSKIRGLITKmmmismmmGCVSGTGTLHRVGGKLGWTPSVNFTEWSSHESFYVNDWLIFNFDKNMYNVLEVNKTSYESCNDKGFIKNITKGGRDVFQLTEPRPYYFLSGRGFCWGGLKAAIFVQETAPTPAPVQARNGSPSSTGSWIIALVMVAASISLTWSVL
********PMEVMCSKIRGLITKMMMISMMMGCVSGTGTLHRVGGKLGWTPSVNFTEWSSHESFYVNDWLIFNFDKNMYNVLEVNKTSYESCNDKGFIKNITKGGRDVFQLTEPRPYYFLSGRGFCWGGLKAAIFVQE******************GSWIIALVMVAASISLTWS**
****L**KPMEVMCSKIRGLITKMMMISMMMGCVSGTGTLHRVGGKLGWTPSVNFTEWSSHESFYVNDWLIFNFDKNMYNVLEVNKTSYESCNDKGFIKNITKGGRDVFQLTEPRPYYFLSGRGFCWGGLKAAI*****************************VMVAASISLTWSVL
MRSVLKVKPMEVMCSKIRGLITKMMMISMMMGCVSGTGTLHRVGGKLGWTPSVNFTEWSSHESFYVNDWLIFNFDKNMYNVLEVNKTSYESCNDKGFIKNITKGGRDVFQLTEPRPYYFLSGRGFCWGGLKAAIFVQETAPT************STGSWIIALVMVAASISLTWSVL
**SVLKVKPMEVMCSKIRGLITKMMMISMMMGCVSGTGTLHRVGGKLGWTPSVNFTEWSSHESFYVNDWLIFNFDKNMYNVLEVNKTSYESCNDKGFIKNITKGGRDVFQLTEPRPYYFLSGRGFCWGGLKAAIFVQET*******************WIIALVMVAASISLTWSVL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
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MRSVLKVKPMEVMCSKIRGLITKMMMISMMMGCVSGTGTLHRVGGKLGWTPSVNFTEWSSHESFYVNDWLIFNFDKNMYNVLEVNKTSYESCNDKGFIKNITKGGRDVFQLTEPRPYYFLSGRGFCWGGLKAAIFVQETAPTPAPVQARNGSPSSTGSWIIALVMVAASISLTWSVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query177 2.2.26 [Sep-21-2011]
Q39131172 Lamin-like protein OS=Ara no no 0.740 0.761 0.398 2e-24
Q9SK27182 Early nodulin-like protei no no 0.610 0.593 0.366 8e-12
P80728108 Mavicyanin OS=Cucurbita p N/A no 0.559 0.916 0.368 1e-11
Q9T076 349 Early nodulin-like protei no no 0.531 0.269 0.377 7e-11
Q5JNJ5237 Early nodulin-like protei no no 0.768 0.573 0.282 3e-09
Q02917187 Early nodulin-55-2 OS=Gly no no 0.672 0.636 0.296 3e-08
P0030396 Basic blue protein OS=Cuc N/A no 0.525 0.968 0.333 4e-08
Q41001189 Blue copper protein OS=Pi N/A no 0.559 0.523 0.306 9e-08
P00302107 Stellacyanin OS=Toxicoden N/A no 0.553 0.915 0.300 3e-06
Q8LC95186 Early nodulin-like protei no no 0.525 0.5 0.315 4e-06
>sp|Q39131|LAML_ARATH Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1 Back     alignment and function desciption
 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 81/133 (60%), Gaps = 2/133 (1%)

Query: 20  LITKMMMISMMMGCVSG-TGTLHRVGGKLGWTPSVNFTEWSSHESFYVNDWLIFNFDKNM 78
           LIT +++  +M   + G T   + VG    W P++N+T W+  + FY+ DWL F FD+N 
Sbjct: 7   LITAVVLAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQ 66

Query: 79  YNVLEVNKTSYESCNDKGFIKNITKG-GRDVFQLTEPRPYYFLSGRGFCWGGLKAAIFVQ 137
           +N+LEVNKT YE C     I+N T+G GRD+  L + + YY L G+G C+GG+K ++ V+
Sbjct: 67  HNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVE 126

Query: 138 ETAPTPAPVQARN 150
           +  P P     +N
Sbjct: 127 KLPPPPKSAPVKN 139

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SK27|ENL1_ARATH Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2 Back     alignment and function description
>sp|P80728|MAVI_CUCPE Mavicyanin OS=Cucurbita pepo PE=1 SV=1 Back     alignment and function description
>sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1 Back     alignment and function description
>sp|Q5JNJ5|ENL1_ORYSJ Early nodulin-like protein 1 OS=Oryza sativa subsp. japonica GN=ENODL1 PE=1 SV=1 Back     alignment and function description
>sp|Q02917|NO552_SOYBN Early nodulin-55-2 OS=Glycine max GN=ENOD55-2 PE=2 SV=1 Back     alignment and function description
>sp|P00303|BABL_CUCSA Basic blue protein OS=Cucumis sativus PE=1 SV=1 Back     alignment and function description
>sp|Q41001|BCP_PEA Blue copper protein OS=Pisum sativum PE=2 SV=1 Back     alignment and function description
>sp|P00302|STEL_TOXVR Stellacyanin OS=Toxicodendron vernicifluum PE=1 SV=1 Back     alignment and function description
>sp|Q8LC95|ENL3_ARATH Early nodulin-like protein 3 OS=Arabidopsis thaliana GN=At5g25090 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query177
224141441175 predicted protein [Populus trichocarpa] 0.830 0.84 0.559 1e-41
224059240167 predicted protein [Populus trichocarpa] 0.711 0.754 0.590 6e-39
356577422163 PREDICTED: lamin-like protein-like [Glyc 0.875 0.950 0.5 6e-37
255573677179 Early nodulin 55-2 precursor, putative [ 0.881 0.871 0.493 1e-36
357467371167 Lamin-like protein [Medicago truncatula] 0.898 0.952 0.493 7e-35
356550991175 PREDICTED: lamin-like protein-like [Glyc 0.790 0.8 0.503 8e-35
449530917188 PREDICTED: lamin-like protein-like, part 0.627 0.590 0.625 2e-34
449437805184 PREDICTED: lamin-like protein-like [Cucu 0.757 0.728 0.5 2e-34
359488953164 PREDICTED: lamin-like protein [Vitis vin 0.745 0.804 0.522 5e-34
255584345168 Early nodulin 55-2 precursor, putative [ 0.881 0.928 0.468 5e-34
>gi|224141441|ref|XP_002324081.1| predicted protein [Populus trichocarpa] gi|222867083|gb|EEF04214.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/152 (55%), Positives = 112/152 (73%), Gaps = 5/152 (3%)

Query: 29  MMMGCVSGTGTLHRVGGKLGWTPSVNFTEW--SSHESFYVNDWLIFNFDKNMYNVLEVNK 86
           MM+   +    L++VG + GW P+ N+T+W   SHE FYV DWL+F FDK+ YNVLEVN+
Sbjct: 24  MMIVECAAAEQLYKVGSR-GWIPNYNYTDWLNQSHEHFYVGDWLLFVFDKHSYNVLEVNE 82

Query: 87  TSYESCNDKGFIKNITKGGRDVFQLTEPRPYYFLSGRGFCWGGLKAAIFVQETAPTPAPV 146
           TSYE+CND+GFIKNIT+GGRDV QLTE R YYFLS  G+CW G+K AI V++ APTPAP 
Sbjct: 83  TSYENCNDQGFIKNITRGGRDVVQLTEARRYYFLSSGGYCWNGMKVAINVEDFAPTPAPA 142

Query: 147 QA-RNGSPSSTGSWIIALVMVAASISLTWSVL 177
            +  NGSPS+  S  + ++++A  ++L W VL
Sbjct: 143 SSTENGSPSNIVSRQM-IILIAFCVALEWMVL 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224059240|ref|XP_002299784.1| predicted protein [Populus trichocarpa] gi|222847042|gb|EEE84589.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356577422|ref|XP_003556825.1| PREDICTED: lamin-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|255573677|ref|XP_002527760.1| Early nodulin 55-2 precursor, putative [Ricinus communis] gi|223532847|gb|EEF34621.1| Early nodulin 55-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357467371|ref|XP_003603970.1| Lamin-like protein [Medicago truncatula] gi|355493018|gb|AES74221.1| Lamin-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356550991|ref|XP_003543863.1| PREDICTED: lamin-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|449530917|ref|XP_004172438.1| PREDICTED: lamin-like protein-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449437805|ref|XP_004136681.1| PREDICTED: lamin-like protein-like [Cucumis sativus] gi|449494702|ref|XP_004159623.1| PREDICTED: lamin-like protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359488953|ref|XP_002278873.2| PREDICTED: lamin-like protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|255584345|ref|XP_002532908.1| Early nodulin 55-2 precursor, putative [Ricinus communis] gi|223527342|gb|EEF29488.1| Early nodulin 55-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query177
TAIR|locus:1006230143163 ENODL20 "early nodulin-like pr 0.734 0.797 0.477 2e-31
TAIR|locus:2150951172 ENODL17 "early nodulin-like pr 0.779 0.802 0.394 1.2e-24
TAIR|locus:2102157167 ENODL16 "early nodulin-like pr 0.621 0.658 0.428 2.9e-23
TAIR|locus:2135798141 ENODL19 "early nodulin-like pr 0.610 0.765 0.463 1.6e-22
TAIR|locus:505006529199 ENODL3 "early nodulin-like pro 0.683 0.608 0.340 2e-16
TAIR|locus:2086518174 AT3G27200 [Arabidopsis thalian 0.655 0.666 0.358 1.1e-14
TAIR|locus:2040164182 ENODL14 "early nodulin-like pr 0.610 0.593 0.366 3.8e-14
TAIR|locus:2052866200 AT2G31050 [Arabidopsis thalian 0.694 0.615 0.376 3.8e-14
TAIR|locus:2118691190 ENODL12 "early nodulin-like pr 0.525 0.489 0.34 4.9e-14
TAIR|locus:2127861221 ENODL4 "early nodulin-like pro 0.717 0.574 0.335 6.2e-14
TAIR|locus:1006230143 ENODL20 "early nodulin-like protein 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 63/132 (47%), Positives = 87/132 (65%)

Query:    39 TLHRVGG-KLGWTPSVNFTEWSSHESFYVNDWLIFNFDKNMYNVLEVNKTSYESCNDKGF 97
             +LHRVGG +  W   VNF++W++H+ FY  DWL F F++  +N+L+VNK+SYE C D  +
Sbjct:    26 SLHRVGGGRYTWNSDVNFSDWANHQRFYSGDWLYFGFNRTRHNILQVNKSSYEQCVDNDY 85

Query:    98 IKNITKGGRDVFQLTEPRPYYFLSGRGFCWGGLKAAIFVQETAPTPAPVQ-ARNGSPSST 156
             I NIT+GGRDVFQL EP+PYYF+ GRG+C  G+K AI V    P  AP       +P   
Sbjct:    86 IFNITRGGRDVFQLLEPKPYYFICGRGYCLKGMKLAITVLPQPPPSAPTNFTSTTTPLIP 145

Query:   157 GSWIIALVMVAA 168
              + I A +++ A
Sbjct:   146 PNAITAAILIFA 157
GO:0005507 "copper ion binding" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0009055 "electron carrier activity" evidence=IEA
TAIR|locus:2150951 ENODL17 "early nodulin-like protein 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102157 ENODL16 "early nodulin-like protein 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135798 ENODL19 "early nodulin-like protein 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006529 ENODL3 "early nodulin-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086518 AT3G27200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040164 ENODL14 "early nodulin-like protein 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052866 AT2G31050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118691 ENODL12 "early nodulin-like protein 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127861 ENODL4 "early nodulin-like protein 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00170436
hypothetical protein (175 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query177
PLN03148167 PLN03148, PLN03148, Blue copper-like protein; Prov 2e-32
pfam0229884 pfam02298, Cu_bind_like, Plastocyanin-like domain 1e-22
>gnl|CDD|178693 PLN03148, PLN03148, Blue copper-like protein; Provisional Back     alignment and domain information 
 Score =  113 bits (285), Expect = 2e-32
 Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 4/154 (2%)

Query: 24  MMMISMMMGCVSGTGTLHRVGGKLGWTPSVNFTEWSSHESFYVNDWLIFNFDKNMYNVLE 83
           +     +    + T T H VG   GW P +N+T W+++++FYV D + F + K  YNV E
Sbjct: 6   LFCFFALFSASATTATDHIVGANKGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFE 65

Query: 84  VNKTSYESCNDKGFIKNITKGGRDVFQLTEPRPYYFLSGRGFCWGGLKAAIFVQETAPTP 143
           VN+T Y++C  +G   N T  G+D   L + + YYF+ G G C+ G+K  I V    P P
Sbjct: 66  VNQTGYDNCTTEGAAGNWTS-GKDFIPLNKAKRYYFICGNGQCFNGMKVTILVHPLPPPP 124

Query: 144 APVQARNGSPSSTGSWIIALVMVAASISLTWSVL 177
           +   A NG+ S + +           ++L   VL
Sbjct: 125 SHTAAANGAKSHSAA---PAAFHKGLVALRGLVL 155

Length = 167
>gnl|CDD|216965 pfam02298, Cu_bind_like, Plastocyanin-like domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 177
PLN03148167 Blue copper-like protein; Provisional 100.0
PF0229885 Cu_bind_like: Plastocyanin-like domain; InterPro: 99.97
PRK02710119 plastocyanin; Provisional 98.53
PF0012799 Copper-bind: Copper binding proteins, plastocyanin 98.42
TIGR0265699 cyanin_plasto plastocyanin. Members of this family 98.2
COG3794128 PetE Plastocyanin [Energy production and conversio 98.12
TIGR03102115 halo_cynanin halocyanin domain. Halocyanins are bl 98.08
TIGR02375116 pseudoazurin pseudoazurin. Pseudoazurin, also call 97.94
TIGR0265783 amicyanin amicyanin. Members of this family are am 97.01
TIGR03095148 rusti_cyanin rusticyanin. Rusticyanin is a blue co 96.7
PF06525196 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Memb 95.48
PF13473104 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 94.01
TIGR03094195 sulfo_cyanin sulfocyanin. Members of this family a 93.73
PF00812145 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a 93.44
KOG3858233 consensus Ephrin, ligand for Eph receptor tyrosine 92.38
TIGR03096135 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as de 89.41
COG4454158 Uncharacterized copper-binding protein [Inorganic 88.84
TIGR02695125 azurin azurin. Azurin is a blue copper-binding pro 84.74
PF0717295 GRP: Glycine rich protein family; InterPro: IPR010 84.15
PF00116120 COX2: Cytochrome C oxidase subunit II, periplasmic 82.38
TIGR02376 311 Cu_nitrite_red nitrite reductase, copper-containin 80.61
>PLN03148 Blue copper-like protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.5e-46  Score=299.81  Aligned_cols=114  Identities=38%  Similarity=0.849  Sum_probs=102.6

Q ss_pred             hhhccccceEEEecCCCCCCCCCCccccCCCCceEeCCEEEEEEcCCCceEEEEcccccccCcCCCccceeccCCceEEE
Q 038845           31 MGCVSGTGTLHRVGGKLGWTPSVNFTEWSSHESFYVNDWLIFNFDKNMYNVLEVNKTSYESCNDKGFIKNITKGGRDVFQ  110 (177)
Q Consensus        31 ~~~a~A~~~~~~VGg~~GW~~~~~Y~~Wa~~~~F~vGDtLvF~y~~~~H~V~~V~~~~Y~~C~~~~~i~~~~~~G~~~v~  110 (177)
                      ...+.|+  +|+|||+.||+++.||++|+++++|++||+|+|+|++++|||+||++++|++|+.++++..+++ |++.|+
T Consensus        15 ~~~~~a~--~~~VGd~~GW~~~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~ts-G~d~v~   91 (167)
T PLN03148         15 ASATTAT--DHIVGANKGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTS-GKDFIP   91 (167)
T ss_pred             hhhccce--EEEeCCCCCcCCCCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecC-CCcEEE
Confidence            3344444  9999999999999999999999999999999999999999999999999999999999988865 899999


Q ss_pred             ecCCccEEEEeCCCCCcCCCeEEEEeecCCCCCCCCC
Q 038845          111 LTEPRPYYFLSGRGFCWGGLKAAIFVQETAPTPAPVQ  147 (177)
Q Consensus       111 L~~~G~~YFic~~~HC~~GmKl~I~V~~~~~~~~p~~  147 (177)
                      |+++|+|||||+++||+.||||+|+|.+.+|||+|++
T Consensus        92 L~~~G~~YFIcg~ghC~~GmKl~I~V~~~~~pp~~~~  128 (167)
T PLN03148         92 LNKAKRYYFICGNGQCFNGMKVTILVHPLPPPPSHTA  128 (167)
T ss_pred             ecCCccEEEEcCCCccccCCEEEEEEcCCCCCCCCcc
Confidence            9999999999998899999999999987665554444

>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ] Back     alignment and domain information
>PRK02710 plastocyanin; Provisional Back     alignment and domain information
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ] Back     alignment and domain information
>TIGR02656 cyanin_plasto plastocyanin Back     alignment and domain information
>COG3794 PetE Plastocyanin [Energy production and conversion] Back     alignment and domain information
>TIGR03102 halo_cynanin halocyanin domain Back     alignment and domain information
>TIGR02375 pseudoazurin pseudoazurin Back     alignment and domain information
>TIGR02657 amicyanin amicyanin Back     alignment and domain information
>TIGR03095 rusti_cyanin rusticyanin Back     alignment and domain information
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus Back     alignment and domain information
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D Back     alignment and domain information
>TIGR03094 sulfo_cyanin sulfocyanin Back     alignment and domain information
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO) Back     alignment and domain information
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03096 nitroso_cyanin nitrosocyanin Back     alignment and domain information
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02695 azurin azurin Back     alignment and domain information
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins Back     alignment and domain information
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o Back     alignment and domain information
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query177
1ws7_A109 Crystal Structure Of Mavicyanin From Cucurbita Pepo 1e-12
2cbp_A96 Cucumber Basic Protein, A Blue Copper Protein Lengt 2e-09
1f56_A91 Spinach Plantacyanin Length = 91 4e-07
1jer_A138 Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138 7e-07
1x9r_A116 Umecyanin From Horse Raddish- Crystal Structure Of 2e-04
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo Medullosa (Zucchini) Length = 109 Back     alignment and structure 
Iteration: 1

 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 38  GTLHRVGGKLGWTPSV--NFTEWSSHESFYVNDWLIFNFDKNMYNVLEVNKTSYESCNDK 95
            T+H+VG   GWT  V  ++ +W+S   F+V D L+FN++   +NVL+V++  ++SCN  
Sbjct: 2   ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSS 61
Query: 96  GFIKNITKGGRDVFQLTEPRPYYFLSG-RGFCWGGLKAAIFVQ 137
               + T G  D   L  P  +YFL G  G C  G K  I V 
Sbjct: 62  SPAASYTSGA-DSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVD 103
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein Length = 96 Back     alignment and structure
>pdb|1F56|A Chain A, Spinach Plantacyanin Length = 91 Back     alignment and structure
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138 Back     alignment and structure
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The Oxidised Form Length = 116 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query177
1ws8_A109 Mavicyanin; oxidized form, phytocyanin, cupredoxin 2e-31
1jer_A138 Cucumber stellacyanin; electron transport, copper, 8e-31
1x9u_A116 Umecyanin; cupredoxin, phytocyanin, copper binding 4e-30
2cbp_A96 Cucumber basic protein; electron transport, phytoc 7e-28
1f56_A91 Plantacyanin; cupredoxin, copper protein, beta bar 3e-27
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Length = 109 Back     alignment and structure
 Score =  108 bits (271), Expect = 2e-31
 Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 38  GTLHRVGGKLGWT--PSVNFTEWSSHESFYVNDWLIFNFDKNMYNVLEVNKTSYESCNDK 95
            T+H+VG   GWT     ++ +W+S   F+V D L+FN++   +NVL+V++  ++SCN  
Sbjct: 2   ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSS 61

Query: 96  GFIKNITKGGRDVFQLTEPRPYYFLSG-RGFCWGGLKAAIFVQETAPT 142
               + T  G D   L  P  +YFL G  G C  G K  I V   + +
Sbjct: 62  SPAASYT-SGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVDPGSSS 108
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138 Back     alignment and structure
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Length = 116 Back     alignment and structure
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Length = 96 Back     alignment and structure
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Length = 91 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query177
1jer_A138 Cucumber stellacyanin; electron transport, copper, 100.0
1ws8_A109 Mavicyanin; oxidized form, phytocyanin, cupredoxin 100.0
1x9u_A116 Umecyanin; cupredoxin, phytocyanin, copper binding 100.0
2cbp_A96 Cucumber basic protein; electron transport, phytoc 100.0
1f56_A91 Plantacyanin; cupredoxin, copper protein, beta bar 100.0
1qhq_A140 Protein (auracyanin); electron transfer, cupredoxi 99.22
1bxv_A91 Plastocyanin; copper protein, electron transfer; 1 99.2
2cal_A154 Rusticyanin; iron respiratory electron transport c 99.03
1pmy_A123 Pseudoazurin; electron transfer(cuproprotein); 1.5 98.98
1paz_A123 Pseudoazurin precursor; electron transfer(cupropro 98.96
1iuz_A98 Plastocyanin; electron transport; 1.60A {Ulva pert 98.92
2gim_A106 Plastocyanin; beta sheet, Cu, helix, electron tran 98.86
1plc_A99 Plastocyanin; electron transport; 1.33A {Populus n 98.84
3tu6_A127 Pseudoazurin (blue copper protein); cupredoxins, b 98.8
2aan_A139 Auracyanin A; cupredoxin fold, electron transport; 98.8
3erx_A123 Pseudoazurin; copper protein, high-resolution, E t 98.8
3ef4_A124 Pseudoazurin, blue copper protein; electron transf 98.79
2plt_A98 Plastocyanin; electron transport; 1.50A {Chlamydom 98.78
1kdj_A102 Plastocyanin; electron transfer, photosystem, PAI- 98.76
1byp_A99 Protein (plastocyanin); electron transfer, photosy 98.73
1b3i_A97 PETE protein, protein (plastocyanin); electron tra 98.71
1pcs_A98 Plastocyanin; electron transport; 2.15A {Synechocy 98.63
2ux6_A122 Pseudoazurin; type-1 copper, metal-binding, redox 98.22
3c75_A132 Amicyanin; copper proteins, electron transfer comp 98.1
4hci_A100 Cupredoxin 1; structural genomics, niaid, national 98.06
3cvb_A105 Plastocyanin; cupredoxin, SELF assembly, copper, e 98.06
3ay2_A167 Lipid modified azurin protein; beta sandwich, bact 97.86
1cuo_A129 Protein (azurin ISO-2); beta barrel, periplasmic, 97.85
1id2_A106 Amicyanin; beta barrel, type-1 blue copper protein 97.72
2ov0_A105 Amicyanin; beta-sandwich, electron transport; 0.75 97.68
2iaa_C128 Azurin; quinoprotein, tryptophan tryptophylquinone 97.58
2ccw_A129 Azurin II, AZN-2; electron transport (cuproprotein 97.5
1nwp_A128 Azurin; electron transport, cupredoxin, electron t 97.46
1iko_P178 Ephrin-B2; greek KEY, glycosylation, signaling pro 97.34
2x11_B177 Ephrin-A5; receptor-signaling protein complex, dev 96.97
3czu_B182 Ephrin-A1; ATP-binding, kinase, nucleotide-binding 96.76
1iby_A112 Nitrosocyanin; RED copper, cupredoxin, beta hairpi 96.41
1shx_A138 Ephrin-A5; ephrin signaling, hormone-growth factor 96.39
3d12_B141 Ephrin-B3; beta propeller, protein-receptor comple 96.14
2cua_A135 Protein (CUA); CUA center, electron transport; 1.6 96.11
2vsm_B140 Ephrin-B2; developmental protein, henipavirus, neu 95.69
3fsa_A125 Azurin; copper, cupredoxin fold, metal-binding, pr 95.35
2wo3_B157 Ephrin-A2; transferase-signaling protein complex, 95.2
3s8f_B168 Cytochrome C oxidase subunit 2; complex IV, respir 94.36
2dv6_A 447 Nitrite reductase; electron transfer, reduction, d 93.08
3hei_B132 Ephrin-A1; EPH receptor tyrosine kinase, cell memb 91.94
3sbq_A638 Nitrous-oxide reductase; beta-propeller, cupredoxi 91.11
1fwx_A595 Nitrous oxide reductase; beta-propeller domain, cu 90.52
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Back     alignment and structure
Probab=100.00  E-value=3e-41  Score=264.28  Aligned_cols=108  Identities=30%  Similarity=0.475  Sum_probs=96.5

Q ss_pred             cccceEEEecCCCCCCCC---CCccccCCCCceEeCCEEEEEEcCCCceEEEE-cccccccCcCCCccceeccCCceEEE
Q 038845           35 SGTGTLHRVGGKLGWTPS---VNFTEWSSHESFYVNDWLIFNFDKNMYNVLEV-NKTSYESCNDKGFIKNITKGGRDVFQ  110 (177)
Q Consensus        35 ~A~~~~~~VGg~~GW~~~---~~Y~~Wa~~~~F~vGDtLvF~y~~~~H~V~~V-~~~~Y~~C~~~~~i~~~~~~G~~~v~  110 (177)
                      +|+  +|+|||+.||+.+   .||++|+++++|++||+|+|+|++++|||+|| ++++|+.|+.++++..++ +|++.|+
T Consensus         2 ~a~--~~~VGg~~GW~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~-~G~~~v~   78 (138)
T 1jer_A            2 QST--VHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVE-RTSPVIE   78 (138)
T ss_dssp             CCC--EEETTGGGCSSCCSSTTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCC-CCSCEEE
T ss_pred             Cce--EEEECCcCcCcCCCCccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCcccccc-CCCeEEE
Confidence            355  9999999999987   78999999999999999999999999999999 999999999999988775 4899999


Q ss_pred             e-cCCccEEEEeC-CCCCcCCCeEEEEeecCCCCCCC
Q 038845          111 L-TEPRPYYFLSG-RGFCWGGLKAAIFVQETAPTPAP  145 (177)
Q Consensus       111 L-~~~G~~YFic~-~~HC~~GmKl~I~V~~~~~~~~p  145 (177)
                      | +++|++||||+ ++||++||||+|+|.+..+++++
T Consensus        79 L~~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~~~~  115 (138)
T 1jer_A           79 RLDELGMHYFVCTVGTHCSNGQKLSINVVAANATVSM  115 (138)
T ss_dssp             ECCSSEEEEEECCSTTTGGGTCEEEEEEECCC-----
T ss_pred             eccCCcCEEEEcCCCCccccCCEEEEEEcCCCCCCCC
Confidence            9 99999999999 99999999999999976554433
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Back     alignment and structure
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Back     alignment and structure
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Back     alignment and structure
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Back     alignment and structure
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A Back     alignment and structure
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A Back     alignment and structure
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A Back     alignment and structure
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1 Back     alignment and structure
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A* Back     alignment and structure
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A Back     alignment and structure
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A Back     alignment and structure
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A Back     alignment and structure
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti} Back     alignment and structure
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus} Back     alignment and structure
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A Back     alignment and structure
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0 Back     alignment and structure
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1 Back     alignment and structure
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A Back     alignment and structure
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A Back     alignment and structure
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A* Back     alignment and structure
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A Back     alignment and structure
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A Back     alignment and structure
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A Back     alignment and structure
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A Back     alignment and structure
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae} Back     alignment and structure
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A Back     alignment and structure
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1 Back     alignment and structure
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ... Back     alignment and structure
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C* Back     alignment and structure
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A Back     alignment and structure
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A Back     alignment and structure
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5 Back     alignment and structure
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens} Back     alignment and structure
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B* Back     alignment and structure
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A Back     alignment and structure
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B* Back     alignment and structure
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus} Back     alignment and structure
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B* Back     alignment and structure
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E Back     alignment and structure
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ... Back     alignment and structure
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens} Back     alignment and structure
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ... Back     alignment and structure
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} Back     alignment and structure
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0 Back     alignment and structure
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 177
d2cbpa_96 b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativ 3e-30
d1ws8a_104 b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) 4e-28
d1jera_110 b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativ 2e-26
d1f56a_91 b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia olera 4e-26
>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 96 Back     information, alignment and structure

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score =  104 bits (260), Expect = 3e-30
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 41  HRVGGKLGWTPSVNFTEWSSHESFYVNDWLIFNFDKNMYNVLEVNKTSYESCNDKGFIKN 100
           + VGG  GWT   N   W   + F   D L+FN++ +M+NV+ VN+  + +CN     K 
Sbjct: 3   YVVGGSGGWT--FNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKV 60

Query: 101 ITKGGRDVFQLTEPRPYYFLSGRGFCWGGLKAAIFV 136
            T  GRD  +L + + Y+  +  G C  G+K A+  
Sbjct: 61  YT-SGRDQIKLPKGQSYFICNFPGHCQSGMKIAVNA 95
>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Length = 104 Back     information, alignment and structure
>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 110 Back     information, alignment and structure
>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 91 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query177
d2cbpa_96 Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3 100.0
d1ws8a_104 Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663 100.0
d1jera_110 Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3 100.0
d1f56a_91 Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 99.97
d1bypa_99 Plastocyanin {White campion (Silene pratensis) [Ta 99.03
d1iuza_98 Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 98.96
d2plta_98 Plastocyanin {Green alga (Chlamydomonas reinhardti 98.93
d2cj3a1105 Plastocyanin {Anabaena variabilis [TaxId: 1172]} 98.89
d1kdja_102 Plastocyanin {Fern (Adiantum capillus-veneris) [Ta 98.87
d2q5ba1105 Plastocyanin {Cyanobacterium (Phormidium laminosum 98.83
d1plca_99 Plastocyanin {Poplar (Populus nigra), variant ital 98.81
d1adwa_123 Pseudoazurin {Thiosphaera pantotropha [TaxId: 8236 98.81
d1paza_120 Pseudoazurin {Alcaligenes faecalis, strain s-6 [Ta 98.75
d2jxma197 Plastocyanin {Photosynthetic prokaryote (Prochloro 98.72
d1pcsa_98 Plastocyanin {Cyanobacterium (Synechocystis sp.), 98.7
d1pmya_123 Pseudoazurin {Methylobacterium extorquens, strain 98.65
d1bqka_124 Pseudoazurin {Achromobacter cycloclastes [TaxId: 2 98.64
d1bxua_91 Plastocyanin {Cyanobacterium (Synechocystis sp.), 98.38
d1qhqa_139 Auracyanin {Chloroflexus aurantiacus [TaxId: 1108] 98.24
d2ov0a1105 Amicyanin {Paracoccus denitrificans [TaxId: 266]} 98.12
d1id2a_106 Amicyanin {Paracoccus versutus (Thiobacillus versu 97.79
d1cuoa_129 Azurin {Methylomonas sp. j [TaxId: 32038]} 97.38
d2ccwa1129 Azurin {Alcaligenes xylosoxidans, NCIMB (11015), d 97.21
d1ibya_112 Red copper protein nitrosocyanin {Nitrosomonas eur 96.77
d1e30a_153 Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920 96.69
d1shxa1138 Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]} 96.3
d1fwxa1132 Nitrous oxide reductase, C-terminal domain {Paraco 95.5
d1nwpa_128 Azurin {Pseudomonas putida [TaxId: 303]} 95.34
d2cuaa_122 Cytochrome c oxidase {Thermus thermophilus, ba3 ty 95.22
d1ikop_141 Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 94.77
d1qnia1131 Nitrous oxide reductase, C-terminal domain {Pseudo 94.08
d1aoza1129 Ascorbate oxidase {Zucchini (Cucurbita pepo var. m 92.72
d1kbva1151 Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani 91.58
d1jzga_128 Azurin {Pseudomonas aeruginosa [TaxId: 287]} 91.14
d1oe2a1159 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 91.08
d1gyca1130 Laccase {Trametes versicolor, laccase 2 [TaxId: 53 85.59
d2q9oa1162 Laccase {Melanocarpus albomyces [TaxId: 204285]} 83.87
>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Back     information, alignment and structure
class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=100.00  E-value=4.2e-38  Score=231.30  Aligned_cols=94  Identities=35%  Similarity=0.640  Sum_probs=88.6

Q ss_pred             EEEecCCCCCCCCCCccccCCCCceEeCCEEEEEEcCCCceEEEEcccccccCcCCCccceeccCCceEEEecCCccEEE
Q 038845           40 LHRVGGKLGWTPSVNFTEWSSHESFYVNDWLIFNFDKNMYNVLEVNKTSYESCNDKGFIKNITKGGRDVFQLTEPRPYYF  119 (177)
Q Consensus        40 ~~~VGg~~GW~~~~~Y~~Wa~~~~F~vGDtLvF~y~~~~H~V~~V~~~~Y~~C~~~~~i~~~~~~G~~~v~L~~~G~~YF  119 (177)
                      .|+|||+.||++  +|++||++++|++||+|+|+|+++.|+|+||++++|++|+.++++..++ +|++.|+|++ |++||
T Consensus         2 ~y~VGg~~GW~~--~y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~Y~~C~~~~~~~~~~-~G~~~v~L~~-G~~YF   77 (96)
T d2cbpa_           2 VYVVGGSGGWTF--NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYT-SGRDQIKLPK-GQSYF   77 (96)
T ss_dssp             EEETTGGGCSCS--SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEEC-SSEEEEECCS-EEEEE
T ss_pred             EEEcCCCCCCCc--CHHHHhCCCcEecCCEEEEecCCCCceEEEEChHHcCccCCCCCccccc-CCCeEEEeCC-CCCEE
Confidence            799999999984  6999999999999999999999999999999999999999999988775 5899999987 99999


Q ss_pred             EeC-CCCCcCCCeEEEEee
Q 038845          120 LSG-RGFCWGGLKAAIFVQ  137 (177)
Q Consensus       120 ic~-~~HC~~GmKl~I~V~  137 (177)
                      ||+ ++||+.||||+|+|.
T Consensus        78 ic~~~~hC~~G~Kl~V~Vl   96 (96)
T d2cbpa_          78 ICNFPGHCQSGMKIAVNAL   96 (96)
T ss_dssp             ECCSTTTGGGTCEEEEEEC
T ss_pred             EeCCCCcCcCCCEEEEEEC
Confidence            999 999999999999984
>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Back     information, alignment and structure
>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Back     information, alignment and structure
>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]} Back     information, alignment and structure
>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]} Back     information, alignment and structure
>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure
>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]} Back     information, alignment and structure
>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]} Back     information, alignment and structure
>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]} Back     information, alignment and structure
>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]} Back     information, alignment and structure
>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]} Back     information, alignment and structure
>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]} Back     information, alignment and structure
>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]} Back     information, alignment and structure
>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]} Back     information, alignment and structure
>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]} Back     information, alignment and structure
>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]} Back     information, alignment and structure
>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]} Back     information, alignment and structure
>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]} Back     information, alignment and structure
>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1shxa1 b.6.1.5 (A:32-170) Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]} Back     information, alignment and structure
>d1ikop_ b.6.1.5 (P:) Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]} Back     information, alignment and structure
>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]} Back     information, alignment and structure
>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]} Back     information, alignment and structure
>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId: 204285]} Back     information, alignment and structure