Citrus Sinensis ID: 038848

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440------
Protein Sequence
MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQFHLGKKTDDFNINELQGLVWLMEERKKDLRKRMDYYEQINPPPQESLPPPPHPPQLPAPEDSTAGVGGSTGGGGRNLTESAQWDQWFIDMMKNSENIAGSSSGRTKSDAGSASHQAFAASSGAANQMGLPHGNPRAYNIGSDLGLPHVNPRAYNIGSDLGLPHVNPRAYNIGSDLGLPHVNPRAYNIGSDLELPHANPRAYDVGSDLELPHVNPRAYDVGSDLGLPHGSPRAYNIGSDLRLPCGNPRAYNIGSGLGLPQGNINIGSSSSLGGNDVNLGLRQENTGVASTAASSDMGLSSELFGGSIPGSDVGMPYDVTKQWPHNFYP
Secondary Structure (PSIPRED)
ccccccEEEEcccccHHHHHHHHHcccccccccHHHHcccccEEEEEEcccccccEEccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHHHHHcccHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSElttlcdvnAFIIiyspdesepamwpsrpVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQFhlgkktddfniNELQGLVWLMEERKKDLRKRMDYyeqinpppqeslpppphppqlpapedstagvggstggggrnltesaQWDQWFIDMMKNseniagsssgrtksdagsashqafaassgaanqmglphgnpraynigsdlglphvnpraynigsdlglphvnpraynigsdlglphvnpraynigsdlelphanpraydvgsdlelphvnpraydvgsdlglphgspraynigsdlrlpcgnpraynigsglglpqgninigsssslggndvnlglrqentgvastaassdmglsselfggsipgsdvgmpydvtkqwphnfyp
Flexible Loop (DISEMBL)
mtrkkvklnwiandsarkaslkkrkvgllkkvselttlcdvNAFIIIYSpdesepamwPSRPVVEQLLARFNNMPEMEKSKKMMNQETYLkervvksqdqlkknsrknkvmeVSNLMEQFhlgkktddfniNELQGLVWLMEERKKDLRKRMDYYEQINPPPQESLPPPPHPPQLPAPEDSTAGVGGSTGGGGRNLTESAQWDQWFIDMMKNSENIAGSSSGRTKSDAGSASHQAFAASSGAANQMGLPHGNPRAYNIGSDLGLPHVNPRAYNIGSDLGLPHVNPRAYNIGSDLGLPHVNPRAYNIGSDLELPHANPRAYDVGSDLELPHVNPRAYDVGSDLGLPHGSPRAYNIGSDLRLPCGNPRAYNIGSGLGLPQGNINIGSSSSLGGNDVNLGLRQENTGVASTAASSDMGLSSELFGGSIPGSDVGMPYDVTKQWPHNFYP
Low Complexity Region (SEG)
MTRKKVKLNWIANDSARKASlkkrkvgllkkvSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQFHLGKKTDDFNINELQGLVWLMEERKKDLRKRMDYYEQINpppqeslpppphppqlpapeDSTAgvggstggggRNLTESAQWDQWFIDMMKNSENIAGSSSGRTKSDAGSASHQAFAASSGAANQMGLPHGNPRAYNIGSDLGLPHVNPRAYNIGSDLGLPHVNPRAYNIGSDLGLPHVNPRAYNIGSDLELPHANPRAYDVGSDLELPHVNPRAYDVGSDLGLPHGSPRAYNIGSDLRLPCGNPRAYNIGSGLGLPQgninigsssslggnDVNLGLRQENTGVASTAASSDMGLSSELFGGSIPGSDVGMPYDVTKQWPHNFYP
Disordered region (IsUnstruct)
*******LNWIA**********KRKVGLLKKVSELTTLCDVNAFIIIYS*******************************************************************MEQFHLGKKTDDFNINELQGLVWLMEE*********************************************************QWDQWFIDM**********************************************YNIGSDLGLPHVNPRAYNIGSDLGLPHVNPRAYNIGSDLGLPHVNPRAYNIGSDLELPHANPRAYDVGSDLELPHVNPRAYDVGSDLGLPHG*PRAYNIGSDLRLPCGNPRAYNIGSGLGLPQGNI*****************************************************************
Disordered Region (DISOPRED)
MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFNN*******************RVVK***************EVSNLMEQFHLGKKTDDFNINELQGLVWLMEERKKDLRKRMDY**********************************************************************************************************************************************************************************************************************************************************************SSELFGGSIPGSDVGMPYDVTKQ*******
Disordered Region (DISEMBL)
MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVK***********NKVMEVSNLMEQFHLGKKTDDFNINELQGLVWLMEERKKDLRKRMDYYEQINPPPQESLPPPPHPPQLPAPEDSTAGVGGSTGGGGRNLTESAQWDQWFIDMMKNSENI************************GAANQMGLPHGNPRAYNIGSDLGLPHVNPRAYNIGSDLGLPHVNPRAYNIGSDLGLPHVNPRAYNIGSDLELPHANPRAYDVGSDLELPHVNPRAYDVGSDLGLPHGSPRAYNIGSDLRLPCGNPRAYNIGSGLGLPQGNINIGSSSSLGGNDVNLGLRQENTGVASTAASSDMGLSSELFGGSIPGSDVGMPYDVTKQWPHNFYP
Disordered Region (DISPRO)
***KKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQFHLGKKTDDFNINELQGLVWLMEERKKDLRKRMDYYEQI******SLPPPP*P*********T**********GRNLTESAQWDQWFIDMMKNSENI*****GRTKSDAGSASHQAFAASSGAANQMGLPHGNPRAYNIGSDLGLPHVNPRAYNIGSDLGLPHVNPRAYNIGSDLGLPHVNPRAYNIGSDLELPHANPRAYDVGSDLELPHVNPRAYDVGSDLGLPHGSPRAYNIGSDLRLPCGNPRAYNIGSGLGLPQGNINIGSSSSLGGNDVNLGLRQENTGVASTAASSDMGLSSELFGGSIPGSDVGMPYDVTKQWPHNFYP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQFHLGKKTDDFNxxxxxxxxxxxxxxxxxxxxxMDYYEQINPPPQESLPPPPHPPQLPAPEDSTAGVGGSTGGGGRNLTESAQWDQWFIDMMKNSENIAGSSSGRTKSDAGSASHQAFAASSGAANQMGLPHGNPRAYNIGSDLGLPHVNPRAYNIGSDLGLPHVNPRAYNIGSDLGLPHVNPRAYNIGSDLELPHANPRAYDVGSDLELPHVNPRAYDVGSDLGLPHGSPRAYNIGSDLRLPCGNPRAYNIGSGLGLPQGNINIGSSSSLGGNDVNLGLRQENTGVASTAASSDMGLSSELFGGSIPGSDVGMPYDVTKQWPHNFYP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	446	2.2.26 [Sep-21-2011]
Q9FJK3	321	Agamous-like MADS-box pro	no	no	0.343	0.476	0.428	4e-27
Q7XJK6	366	Agamous-like MADS-box pro	no	no	0.298	0.363	0.420	2e-24
Q7XJK5	320	Agamous-like MADS-box pro	no	no	0.309	0.431	0.417	2e-23
Q9C6V4	464	Agamous-like MADS-box pro	no	no	0.338	0.325	0.346	4e-22
Q7XJK8	278	MADS-box transcription fa	no	no	0.367	0.589	0.352	1e-21
O80805	279	MADS-box transcription fa	no	no	0.257	0.412	0.426	2e-21
Q9C6V3	339	Agamous-like MADS-box pro	no	no	0.374	0.492	0.341	1e-20
Q6R4R6	148	Truncated transcription f	N/A	no	0.320	0.966	0.269	8e-08
Q6R4R7	148	Truncated transcription f	N/A	no	0.320	0.966	0.263	9e-07
P0C5B2	233	MADS-box transcription fa	no	no	0.329	0.630	0.272	1e-06

>sp|Q9FJK3|AGL80_ARATH Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1

 Score =  123 bits (308), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 66/154 (42%), Positives = 111/154 (72%), Gaps = 1/154 (0%)

Query: 1   MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPS 60
           MTRKKVKL +I+NDS+RKA+ KKRK GL+KKV EL+TLC + A  IIYSP ++ P +WPS
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query: 61  RPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQF 120
              V+++++ F  +PEM++ KKM++QE +LK+R+ K+ + L++  + ++ +E++ +M Q 
Sbjct: 61  NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query: 121 HLGK-KTDDFNINELQGLVWLMEERKKDLRKRMD 153
            +G  +    NI +L  L +++E+  KD+ +R++
Sbjct: 121 LIGNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIE 154

Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XJK6|AGL36_ARATH Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana GN=AGL36 PE=1 SV=1

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/145 (42%), Positives = 89/145 (61%), Gaps = 12/145 (8%)

Query: 4   KKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPV 63
           KKVKL+ IAN+ +RK S  KRK G+ KK+ EL+TLC V A  +IYSP    P  WPSR  
Sbjct: 2   KKVKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  VEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNL------- 116
            +++ +RF  MP   ++KKMM+QETYL ER+ K+++QLK  + +N+ ++V          
Sbjct: 62  AKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQVRRFMFDCVEG 121

Query: 117 -MEQFHLGKKTDDFNINELQGLVWL 140
            M Q+H   K    ++ +LQ  + L
Sbjct: 122 KMSQYHYDAK----DLQDLQSCINL 142

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XJK5|AGL90_ARATH Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana GN=AGL90 PE=1 SV=2

 Score =  110 bits (276), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 89/139 (64%), Gaps = 1/139 (0%)

Query: 4   KKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPV 63
           KKVKL+ IAN+ +RK S  KRK G+ KK+ EL+TLC V A  +IYSP    P  WPSR  
Sbjct: 2   KKVKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  VEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQFHLG 123
            +++ ++F  MP   +++KMM+QET+L ER+ K+++QLK  + +N+ ++V   M     G
Sbjct: 62  AKKVASKFLEMPRTARTRKMMDQETHLMERITKAKEQLKNLAAENRELQVRRFMFDCVEG 121

Query: 124 KKTD-DFNINELQGLVWLM 141
           K +   ++  +LQ L+  M
Sbjct: 122 KMSQYRYDAKDLQDLLSCM 140

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6V4|AGL92_ARATH Agamous-like MADS-box protein AGL92 OS=Arabidopsis thaliana GN=AGL92 PE=1 SV=1

 Score =  106 bits (264), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 90/153 (58%), Gaps = 2/153 (1%)

Query: 3   RKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRP 62
           R K KL  I +   R+A+ +KR  G+ KK+ ELTTLCD+ A  +IYSP E+ P +WPS  
Sbjct: 2   RTKTKLVLIPDRHFRRATFRKRNAGIRKKLHELTTLCDIKACAVIYSPFEN-PTVWPSTE 60

Query: 63  VVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQFHL 122
            V+++++ F   P  E+SK MM+ ET+L++++ K Q++L+   R+N+  ++ + M     
Sbjct: 61  GVQEVISEFMEKPATERSKTMMSHETFLRDQITKEQNKLESLRRENRETQLKHFMFDCVG 120

Query: 123 GKKTD-DFNINELQGLVWLMEERKKDLRKRMDY 154
           GK ++  +   +LQ L    ++    L  R  +
Sbjct: 121 GKMSEQQYGARDLQDLSLFTDQYLNQLNARKKF 153

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XJK8|PHE2_ARATH MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana GN=PHE2 PE=1 SV=1

 Score =  104 bits (260), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 105/170 (61%), Gaps = 6/170 (3%)

Query: 3   RKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRP 62
           ++K+KL+ I N  +RK +  KRK G+ KK++EL TLC V A  ++YSP  S P  WPSR 
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query: 63  VVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQF-H 121
            VE ++++F  +  ++++KKM++QET++ +R+ K ++QL+K   +N   ++  LM  F  
Sbjct: 62  GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELM--FGC 119

Query: 122 LGKKTDDFNIN--ELQGLVWLMEERKKDLRKRMDYYEQINPPPQESLPPP 169
           L  +T+ +N++  +LQ L   +++    L +R++   + N     SLP P
Sbjct: 120 LKGETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEILIE-NGESSSSLPLP 168

Probable transcription factor involved in the development of gametophytes and seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|O80805|PHE1_ARATH MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana GN=PHE1 PE=1 SV=1

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 80/115 (69%)

Query: 3   RKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRP 62
           R K+KL++I NDS RK +  KRK G+LKK +EL TLC V+A  +I SP  S    WPSR 
Sbjct: 2   RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query: 63  VVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLM 117
            VE+++++F     ++++KKM++QET+L++R+ K  ++L+K   +N+  ++ +LM
Sbjct: 62  GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLM 116

Probable transcription factor involved in the development of gametophytes and seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6V3|AGL86_ARATH Agamous-like MADS-box protein AGL86 OS=Arabidopsis thaliana GN=AGL86 PE=1 SV=1

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 93/170 (54%), Gaps = 3/170 (1%)

Query: 3   RKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRP 62
           R K+KL+ IAN ++R+ + +KRK G+  K+ ELTTLC V A  +I SP E+ P +WPS  
Sbjct: 2   RSKIKLSLIANKTSRRTTFRKRKGGITNKLHELTTLCGVKACAVISSPYEN-PVVWPSTE 60

Query: 63  VVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQFHL 122
            V++ ++ F   P  E+SK MM+ ETYL++++ K   +L+   R+N+  ++   M     
Sbjct: 61  GVQEAVSMFMERPATEQSKLMMSHETYLQDKITKETKKLESLRRENRESQLRQFMFDCVE 120

Query: 123 GKKTD-DFNINELQGLVWLMEERKKDLRKRMDYYEQINPPPQESLPPPPH 171
           GK ++  +   +LQ L   ++     L   +      N     S PPP H
Sbjct: 121 GKMSEHQYGARDLQDLSLYIDHYINQLNSSVMLLTN-NGASSSSFPPPLH 169

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6R4R6|CALD_BRAOB Truncated transcription factor CAULIFLOWER D OS=Brassica oleracea var. botrytis GN=CAL-D PE=2 SV=1

 Score = 58.9 bits (141), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 9/152 (5%)

Query: 1   MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPS 60
           M R +V++  I N   R+ +  KR+ GLLKK  E++ LCD    +I++S  + +   + S
Sbjct: 1   MGRGRVEMKRIENKINRQVTFSKRRAGLLKKAHEISILCDAEVSLIVFS-HKGKLFEYSS 59

Query: 61  RPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLK-KNSRKNKVMEVSNLMEQ 119
              +E++L R+      EK  K  +         V +Q     + SR    +E+    ++
Sbjct: 60  ESCMEKVLERYERYSYAEKQLKAPDSH-------VNAQTNWSMEYSRLKAKIELWERNQR 112

Query: 120 FHLGKKTDDFNINELQGLVWLMEERKKDLRKR 151
            +LG+  +  +I ELQ L   ++   K +R R
Sbjct: 113 HYLGEDLESISIKELQNLEQQLDTSLKHIRSR 144

Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1.

Brassica oleracea var. botrytis (taxid: 3715)

>sp|Q6R4R7|CALC_BRAOB Truncated transcription factor CAULIFLOWER C OS=Brassica oleracea var. botrytis GN=CAL-C PE=2 SV=1

 Score = 55.5 bits (132), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 9/152 (5%)

Query: 1   MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPS 60
           M R +V++  I N   R+ +  KR+ GLLKK  E++ LCD    +I++S  + +   + S
Sbjct: 1   MGRGRVEMKRIENKINRQVTFSKRRAGLLKKAHEISILCDAEVSLIVFS-HKGKLFEYSS 59

Query: 61  RPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLK-KNSRKNKVMEVSNLMEQ 119
              +E++L R+      EK  K  +         V +Q     + SR    +E+    ++
Sbjct: 60  ESCMEKVLERYERYSYAEKQLKAPDSH-------VNAQTNWSMEYSRLKAKIELWERNQR 112

Query: 120 FHLGKKTDDFNINELQGLVWLMEERKKDLRKR 151
            +LG+  +  +I ELQ L   ++   K +  R
Sbjct: 113 HYLGEDLESISIKELQNLEQQLDTSLKHIPSR 144

Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1.

Brassica oleracea var. botrytis (taxid: 3715)

>sp|P0C5B2|MAD56_ORYSJ MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 84/158 (53%), Gaps = 11/158 (6%)

Query: 1   MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPS 60
           M R + +L  I N ++R+ +  KR+ GLLKK  EL+ LCD    +I++SP       + S
Sbjct: 1   MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSP-RGRLYEFAS 59

Query: 61  RPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQF 120
            P +++ + R+        +K  +N +T +++ + + +D     ++K + ++ S    + 
Sbjct: 60  APSLQKTIDRYKAY-----TKDHVNNKT-IQQDIQQVKDDTLGLAKKLEALDESR---RK 110

Query: 121 HLGKKTDDFNINELQGLVWLMEERKKDLR-KRMDYYEQ 157
            LG+  + F+I EL+GL   +E+    +R K+ +  EQ
Sbjct: 111 ILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQ 148

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	446
255566177	291	mads box protein, putative [Ricinus comm	0.576	0.883	0.466	2e-62
224088112	469	predicted protein [Populus trichocarpa]	0.719	0.684	0.419	3e-58
224139996	484	predicted protein [Populus trichocarpa]	0.508	0.469	0.518	9e-57
449437878	387	PREDICTED: uncharacterized protein LOC10	0.520	0.599	0.458	2e-53
147834156	532	hypothetical protein VITISV_003793 [Viti	0.901	0.755	0.296	1e-42
449435956	225	PREDICTED: agamous-like MADS-box protein	0.343	0.68	0.519	2e-35
224124310	164	predicted protein [Populus trichocarpa]	0.343	0.932	0.5	1e-34
421957990	207	MADS-box protein AGL83 [Aquilegia coerul	0.419	0.903	0.395	2e-33
356569385	239	PREDICTED: agamous-like MADS-box protein	0.464	0.866	0.429	3e-33
255543042	287	mads box protein, putative [Ricinus comm	0.338	0.526	0.523	3e-33

>gi|255566177|ref|XP_002524076.1| mads box protein, putative [Ricinus communis] gi|223536644|gb|EEF38286.1| mads box protein, putative [Ricinus communis]

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 134/287 (46%), Positives = 179/287 (62%), Gaps = 30/287 (10%)

Query: 1   MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPS 60
           MTRKKVKL WI ND+ARKASLKKR++GLLKKVSELTTLC V+AF++IYSPDE+EP +WPS
Sbjct: 1   MTRKKVKLVWIVNDAARKASLKKRRIGLLKKVSELTTLCGVSAFVVIYSPDEAEPMLWPS 60

Query: 61  RPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQF 120
           RPVV+Q+L R+ N+PE+++ KK MNQE YLKER+ K Q+Q KK+ +KN+ +E+S LM++ 
Sbjct: 61  RPVVQQMLMRYQNIPEIDRCKKTMNQELYLKERMGKIQEQSKKSQKKNREVEMSYLMDKL 120

Query: 121 HL-GKKTDDFNINELQGLVWLMEERKKDLRKRMDYYEQINP--PPQESLPPPPHPPQLPA 177
           H  G   DDF   + Q L+WL+EER +D+RKR++Y++Q+ P  PP     PPP P     
Sbjct: 121 HYQGNGVDDFETGDTQILIWLLEERMRDMRKRVEYFQQVPPLLPPGYEFLPPPPPQGDHN 180

Query: 178 PEDSTAGVGGSTGGG---GRNLTESAQWDQWFIDMMKNSENIA----------------- 217
            E+     GGS GG      N T++   DQWF+DM+ N+E  +                 
Sbjct: 181 MEEMGQTNGGSEGGDQIRNNNPTDAMSLDQWFLDMINNNEGFSGGGVDVGDLGLGLSLPL 240

Query: 218 -------GSSSGRTKSDAGSASHQAFAASSGAANQMGLPHGNPRAYN 257
                  G+SSG    +A       F    G +  +GLP GN    N
Sbjct: 241 PHSTFTIGNSSGGDNGNAAFGMGLPFPPMGGNSFGLGLPDGNTAGNN 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088112|ref|XP_002308328.1| predicted protein [Populus trichocarpa] gi|222854304|gb|EEE91851.1| predicted protein [Populus trichocarpa]

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 166/396 (41%), Positives = 211/396 (53%), Gaps = 75/396 (18%)

Query: 1   MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPS 60
           MTRKKVKL WI ND+ARKASLKKR+VGLLKKVSELT LC + AF+IIYSPDE EPA+WPS
Sbjct: 1   MTRKKVKLTWIVNDAARKASLKKRRVGLLKKVSELTILCGIEAFVIIYSPDEPEPAVWPS 60

Query: 61  RPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQF 120
           RP V QLL RF NMP+ME+ KKM NQE+YLKER+ K  DQ +K+ + N+ +E++ LM+Q 
Sbjct: 61  RPEVRQLLMRFQNMPDMERYKKMTNQESYLKERMAKLNDQSRKHLKTNRELEMAGLMQQV 120

Query: 121 HLGKKTDDFNINELQGLVWLMEERKKDLRKRMDYYEQINPPPQ---------ESLPPPPH 171
           +  K  D  +  +L+GL  L+EE+ K++RKR++Y++QI PP Q          S    P+
Sbjct: 121 YQDKGFDGLDQTQLRGLTLLVEEKMKEIRKRVEYFQQI-PPLQPGAFPPGPFPSNHQDPN 179

Query: 172 PPQLPAPEDSTAGVGGSTGGGGRNLTE-SAQWDQWFIDMMKNSE-NIAGSSSGRTKSDAG 229
                  + ++   GG +  G  N  +  A WD WF D++ N E N+AG SS R     G
Sbjct: 180 KDDGGDDDGTSGQAGGESRDGRNNPKDGGASWDHWFTDIINNPEHNVAGGSSARNV--LG 237

Query: 230 SASHQAF-AASSGAANQMGLP----HGNPRAYNIGSDLGLPHVNPRAYNIGS-------D 277
                 F   SSG    +G       G   ++     LGLPH    + N+G        D
Sbjct: 238 RPHLINFTGVSSGGGPDIGFHPGHNGGGGSSFRDIVGLGLPH----SRNMGGIRGGHSFD 293

Query: 278 LG-LPHVNPRAYNIGS------DLGLP----------------HVNPR--AYNIGS---- 308
           LG LPH N       S      DL LP                H  PR   +N G     
Sbjct: 294 LGQLPHENESLRGSSSAGGNNFDLRLPLGSNMTGGNNAGNSFDHWLPRGLGFNPGGNNSV 353

Query: 309 ----DLELPHANPRAYDVGS--------DLELPHVN 332
               DL+LP  N    DVG         DL LPHVN
Sbjct: 354 GHNFDLDLPQGN----DVGGNSTGGNNFDLWLPHVN 385

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139996|ref|XP_002323374.1| predicted protein [Populus trichocarpa] gi|222868004|gb|EEF05135.1| predicted protein [Populus trichocarpa]

 Score =  227 bits (579), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 123/237 (51%), Positives = 163/237 (68%), Gaps = 10/237 (4%)

Query: 1   MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPS 60
           M RKKVKL WI ND+ARKASLKKR+VGLLKKVSELT LC + AF+IIYSPD+ EPA+WPS
Sbjct: 1   MARKKVKLMWIVNDAARKASLKKRRVGLLKKVSELTILCGIEAFVIIYSPDDPEPAIWPS 60

Query: 61  RPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQF 120
            P V++L+ RF N+P ME+ KKMMNQE+YLKER+ K  DQ +K+ +KN+ +E+++LM+Q 
Sbjct: 61  LPDVQRLVTRFRNIPVMERGKKMMNQESYLKERMGKLNDQSRKHLKKNRELEMADLMQQV 120

Query: 121 HLGKKTDDFNINELQGLVWLMEERKKDLRKRMDYYEQINPPPQESL------PPPPHPPQ 174
           +  K  D  +  +L GL WL+ E+ KD+RKR++Y++QI P    SL      P  P+   
Sbjct: 121 YQDKGFDGLDQTQLCGLAWLVAEKMKDIRKRVEYFQQIPPLQDASLPPGPFPPQYPNEDD 180

Query: 175 LPAPEDSTAGVGGSTGGGGRNLTESAQ-WDQWFIDMMKNSE-NIAGSSSGRTKSDAG 229
               +++   V G  G G  N T+    WDQWF D++ N E N+AG SS  TKSD G
Sbjct: 181 GGGGDETGGQVVGEPGDGRNNPTDGGVPWDQWFTDIINNREHNVAGGSS--TKSDLG 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437878|ref|XP_004136717.1| PREDICTED: uncharacterized protein LOC101219702 [Cucumis sativus] gi|449501194|ref|XP_004161303.1| PREDICTED: uncharacterized LOC101219702 [Cucumis sativus]

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/253 (45%), Positives = 156/253 (61%), Gaps = 21/253 (8%)

Query: 1   MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPS 60
           MTRKKVKL WIA+D+ARKAS KKR++GLLKKVSELTTLC V AF ++  PDE  P +WPS
Sbjct: 1   MTRKKVKLVWIASDNARKASFKKRRLGLLKKVSELTTLCGVYAFAVVTGPDEDHPVIWPS 60

Query: 61  RPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQF 120
               + L  RF+++PE+E+ KKM NQETYLKER  K+QD LKK+ +KN+ +E+  LM Q 
Sbjct: 61  LSAAQHLYRRFHSLPEVERQKKMTNQETYLKERTTKTQDLLKKHIKKNQELELDLLMHQL 120

Query: 121 HLGKKTDDFNINELQGLVWLMEERKKDLRKRMDYYEQINPPPQESLPPPP----HPPQLP 176
           H G++       EL GL W++EER +D RKR++Y+ Q++      LPPPP      P L 
Sbjct: 121 HQGRQIYQLTNGELLGLFWMIEERIRDCRKRIEYHHQVH-----RLPPPPGLVTSNPALL 175

Query: 177 APEDSTAGVGGSTGGGGRNLTESAQWDQWFIDMMKNSENIAGSSSGRTKSDAGSASHQAF 236
             E++   +  +    GRNL      DQWFIDM+ N+ +  G SS     + G    +  
Sbjct: 176 ETENNEMDLVDN----GRNLM-----DQWFIDMVMNTNDKTGGSSSSMAGELGFVQSEGN 226

Query: 237 AA---SSGAANQM 246
                ++G  N M
Sbjct: 227 GVDMMTNGGGNSM 239

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834156|emb|CAN73161.1| hypothetical protein VITISV_003793 [Vitis vinifera]

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 144/485 (29%), Positives = 229/485 (47%), Gaps = 83/485 (17%)

Query: 1   MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPS 60
           M RKKV+L WIA+DSAR+A  +KR+ GLLKKV EL+TLC V A I+++ PD+ EPA WPS
Sbjct: 1   MARKKVRLAWIASDSARRACFRKRRAGLLKKVMELSTLCGVEAAIVVFCPDD-EPAFWPS 59

Query: 61  RPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQF 120
           +P VEQL  R+  +P ME+SKKM++QE +L+ER+ K  +Q  K  ++   ME+++L+ Q 
Sbjct: 60  KPAVEQLFRRYEEIPVMERSKKMLSQENFLRERIAKIXEQTSKCLKRVVEMEMNDLVYQI 119

Query: 121 HLGKKTDDFNINELQGLVWLMEERKKDLRKRMDYYEQINPPPQESLPPPPH-PPQLPAPE 179
             G +  +  I++L  ++  +EE+  ++ KR  +  +  P      P     PP L +  
Sbjct: 120 VNGNRMYELPISDLTNVMRFLEEKNSEIXKRAQHLHEFPPLSGNGTPSSSSLPPALISAL 179

Query: 180 DSTAGVGGSTGGGGRNLTESAQWDQWFIDMMKNSENIAGSSSGRTKSDAGSASHQAFAA- 238
           +  A  GG     GR   ++ + D+W  D  K+  N   ++ G   ++ G   ++     
Sbjct: 180 ERAAPSGG-LDTEGRGAIDNPRRDKWITD--KSLVNNIAANGGW--NEIGMQQYKDMLGL 234

Query: 239 ----------SSGAANQMGLPHGNPRAYNIGSDLGLPH----------VNPRAYNIGSDL 278
                      S A+N +    GN      G ++ LP+          +   + +  +DL
Sbjct: 235 LHGISNIPMXPSSASNNIEFSQGNTHIPMAGEEMWLPYGNMGGSGTGGIPMESLHGSTDL 294

Query: 279 GLPHVNPR-AYNI-----GSDLGLPHVNPRAYNIGSDLELPHANPRAYDVGSDLELP--- 329
            +  + PR  +NI     G+ +GLPH N      GS++  P+        G +++ P   
Sbjct: 295 TINLMGPRYGFNIRTSSGGNQMGLPHRNADLV-AGSEIAFPYGTG-----GGNIDFPVAA 348

Query: 330 -------------------HVNPRAYDVGSDLGLPHGSPRAYNIGSDLRLPCGNPRAYN- 369
                              H N      G+ +GLP+G   ++  G+++ +P GN      
Sbjct: 349 NQMGLPDRSNGSLITGVNHHGNTDFLMAGNQMGLPYGINDSFAGGNEMGVPHGNSTGMTM 408

Query: 370 IGSGLGLPQGNINIGSSSSLGGNDVNLGLRQENTGVASTAASSDMGLSSELFGGSIPGSD 429
           +GS  GLP G  NIGSS+           R    G       ++MG     FG       
Sbjct: 409 VGSEAGLPTG--NIGSST-----------RGHQMGAVGLMLGNEMGPPYGNFG------- 448

Query: 430 VGMPY 434
           VG+PY
Sbjct: 449 VGVPY 453

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435956|ref|XP_004135760.1| PREDICTED: agamous-like MADS-box protein AGL80-like [Cucumis sativus] gi|449510829|ref|XP_004163773.1| PREDICTED: agamous-like MADS-box protein AGL80-like [Cucumis sativus]

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/154 (51%), Positives = 113/154 (73%), Gaps = 1/154 (0%)

Query: 1   MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPS 60
           MTRKKVKL +IANDSARKA+ KKRK GL+KKVSEL+TLC + A  II+SP +S+P +WPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  RPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQ- 119
              V+++L++F  MPEME+SKKM+NQET+L++R+ K+ +QLKK  + N+  E++ LM Q 
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 120 FHLGKKTDDFNINELQGLVWLMEERKKDLRKRMD 153
               K     N+ +L  L WL+++  KD+  R+D
Sbjct: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRID 154

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124310|ref|XP_002329991.1| predicted protein [Populus trichocarpa] gi|222871416|gb|EEF08547.1| predicted protein [Populus trichocarpa]

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 115/154 (74%), Gaps = 1/154 (0%)

Query: 1   MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPS 60
           MTRKKVKL +I NDSARKA+ KKR+ GL+KKVSEL+TLC ++A  IIYSP +S+P +WPS
Sbjct: 1   MTRKKVKLAFIVNDSARKATFKKRRKGLMKKVSELSTLCGIDACAIIYSPYDSQPEVWPS 60

Query: 61  RPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQF 120
              V+++L++F  MPEME+SKKM+NQE++L++R+ K+ +QL+K  ++N+  EV+  M Q 
Sbjct: 61  PLGVQRVLSKFKTMPEMEQSKKMVNQESFLRQRITKASEQLRKQRKENREKEVTQAMFQC 120

Query: 121 HLGK-KTDDFNINELQGLVWLMEERKKDLRKRMD 153
             GK    + N+ +L  L W+++   KD+ KR++
Sbjct: 121 LTGKINLANLNMIDLNDLGWMIDRNLKDVEKRVE 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|421957990|gb|AFX72872.1| MADS-box protein AGL83 [Aquilegia coerulea]

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/205 (39%), Positives = 126/205 (61%), Gaps = 18/205 (8%)

Query: 1   MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSP-DESEPAMWP 59
           M RKKVKL WIANDSA++++ KKRK GL+KK++EL+TLC V A  ++Y P D   P +WP
Sbjct: 1   MARKKVKLAWIANDSAQRSTYKKRKQGLMKKINELSTLCGVEACAVVYGPYDPQVPDVWP 60

Query: 60  SRPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQ 119
           S     ++L +F ++PEME++KKMMNQE +LKER+ K ++Q+KK  R+N+  E++ LM +
Sbjct: 61  SPSDAHRVLTQFKSLPEMERNKKMMNQEAFLKERMAKMREQIKKQQRENREFEITQLMNR 120

Query: 120 FHL---GKKTDDFNINELQGLVWLMEERKKDLRKRMD--------YYEQINPPPQESLPP 168
             +   G+   +    EL+ L W+++E+ K ++KR+D          +QIN    ++   
Sbjct: 121 TLIDGTGQILQNVETKELKDLAWMIDEKMKRIQKRIDSLRSTMESAVQQINGTGIQT--- 177

Query: 169 PPHPPQLPAPEDSTAGVGGSTGGGG 193
                ++ A +    GVG     GG
Sbjct: 178 ---TTEMEAAQRQIWGVGNDFANGG 199

Source: Aquilegia coerulea

Species: Aquilegia coerulea

Genus: Aquilegia

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569385|ref|XP_003552882.1| PREDICTED: agamous-like MADS-box protein AGL80-like [Glycine max]

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/212 (42%), Positives = 140/212 (66%), Gaps = 5/212 (2%)

Query: 1   MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPS 60
           MTRKKVKL +IANDSARKA+ KKRK GL+KKVSEL+TLC ++A  I+YSP + +P +WPS
Sbjct: 1   MTRKKVKLAFIANDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSPYDPQPEVWPS 60

Query: 61  RPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQF 120
              V+++LA+F  MPE+E+SKKM+NQE++L++R++K++DQLKK  + N+  E++ LM Q+
Sbjct: 61  PMGVQRVLAKFRRMPELEQSKKMVNQESFLRQRIMKAKDQLKKQRKDNREKEMTQLMFQY 120

Query: 121 -HLGKKTDDFNINELQGLVWLMEERKKDLRKRMDYYEQINPPPQESLPPPPHPPQLPAPE 179
              GK   + ++ +L  L WL+++  KD+ +R++   + N   Q  +  P         E
Sbjct: 121 LSAGKIMHNISMVDLNDLAWLIDQNLKDINRRIEVLTK-NAQSQPQIAAPAVTDVAAKVE 179

Query: 180 DSTAGVGGSTGGGGRNL-TESAQWDQWFIDMM 210
           D   G G   G  G ++  +  Q   WF+++M
Sbjct: 180 DK--GQGSQHGHQGFDINMDLMQKQNWFMNLM 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543042|ref|XP_002512584.1| mads box protein, putative [Ricinus communis] gi|223548545|gb|EEF50036.1| mads box protein, putative [Ricinus communis]

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/151 (52%), Positives = 116/151 (76%)

Query: 1   MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPS 60
           MTRKKVKL +I NDSARKA+ KKRK GL+KKV EL+TLC + A +IIYSP +++P +WPS
Sbjct: 1   MTRKKVKLAYITNDSARKATFKKRKKGLIKKVDELSTLCGIEACVIIYSPYDTQPEVWPS 60

Query: 61  RPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQF 120
              V+ +L++F NMPEME+SKKM+NQE++LK+R+ K+ DQLKK  ++N+  EV+ +M Q 
Sbjct: 61  PTGVQHVLSQFRNMPEMEQSKKMVNQESFLKQRLGKANDQLKKQRKENREKEVTRVMFQS 120

Query: 121 HLGKKTDDFNINELQGLVWLMEERKKDLRKR 151
            +G+   + N+ +L  L W++++  KD+RK+
Sbjct: 121 LIGRTLTNLNMIDLNDLSWIIDQHLKDIRKK 151

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	446
TAIR|locus:2152511	321	AGL80 "AGAMOUS-like 80" [Arabi	0.343	0.476	0.370	9.6e-29
TAIR|locus:2065092	371	AGL48 "AGAMOUS-like 48" [Arabi	0.349	0.420	0.391	1.1e-27
TAIR|locus:2146774	218	AT5G26630 [Arabidopsis thalian	0.356	0.729	0.343	5.3e-24
TAIR|locus:2143769	320	AGL90 "AGAMOUS-like 90" [Arabi	0.336	0.468	0.357	1.7e-23
TAIR|locus:2146794	366	AGL36 "AGAMOUS-like 36" [Arabi	0.300	0.366	0.4	7.6e-21
TAIR|locus:2206325	278	AGL38 "AGAMOUS-like 38" [Arabi	0.336	0.539	0.313	4.5e-18
TAIR|locus:2053608	250	AGL95 "AGAMOUS-like 95" [Arabi	0.266	0.476	0.369	2.8e-17
TAIR|locus:2206280	279	PHE1 "PHERES1" [Arabidopsis th	0.257	0.412	0.365	1e-16
TAIR|locus:2074494	260	AT3G05860 [Arabidopsis thalian	0.325	0.557	0.303	1.3e-15
TAIR|locus:2028591	464	AGL92 "AGAMOUS-like 92" [Arabi	0.338	0.325	0.313	8e-15

TAIR|locus:2152511 AGL80 "AGAMOUS-like 80" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
 Identities = 57/154 (37%), Positives = 101/154 (65%)

Query:     1 MTRKKVKLNWIANDSARKASXXXXXXXXXXXXSELTTLCDVNAFIIIYSPDESEPAMWPS 60
             MTRKKVKL +I+NDS+RKA+             EL+TLC + A  IIYSP ++ P +WPS
Sbjct:     1 MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query:    61 RPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQF 120
                V+++++ F  +PEM++ KKM++QE +LK+R+ K+ + L++  + ++ +E++ +M Q 
Sbjct:    61 NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query:   121 HLGK-KTDDFNINELQGLVWLMEERKKDLRKRMD 153
              +G  +    NI +L  L +++E+  KD+ +R++
Sbjct:   121 LIGNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIE 154

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0043078 "polar nucleus" evidence=IDA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2065092 AGL48 "AGAMOUS-like 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
 Identities = 61/156 (39%), Positives = 85/156 (54%)

Query:     1 MTRKKVKLNWIANDSARKASXXXXXXXXXXXXSELTTLCDVNAFIIIYSPDESEPAMWPS 60
             MTRKKVKL WI ND +R  S             ELT LC V A +II+SPD+  P +WPS
Sbjct:     1 MTRKKVKLVWIENDKSRATSLQKMRVGLLKKVKELTILCAVRAIVIIFSPDKVGPLVWPS 60

Query:    61 RPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQF 120
                   LL  F  +P+  + KK  N E+YLKE+  K Q+QLKK+ +KNK   +  LM Q 
Sbjct:    61 PQATHGLLDEFFALPKSVQKKKESNVESYLKEKTHKFQEQLKKSKKKNKEHVIDELMMQL 120

Query:   121 HLGKKTDDFNINELQGLVWLMEERKKDLRKRMDYYE 156
               G++  D N +E+  L+    +     RK++ + +
Sbjct:   121 QSGREIADLNQSEMYALLSFSRDTILLCRKKLAFMQ 156

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2146774 AT5G26630 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 55/160 (34%), Positives = 96/160 (60%)

Query:     1 MTRKKVKLNWIANDSARKASXXXXXXXXXXXXSELTTLCDVNAFIIIYSPDESEPAMWPS 60
             MTR+KVK+ +I N++ARK++             EL  LC V  F ++ SP E  P +WPS
Sbjct:     1 MTRQKVKMTFIENETARKSTFKKRKKGLLKKAQELGILCGVPIFAVVNSPYELNPEVWPS 60

Query:    61 RPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQF 120
             R    Q+++++  M  M+K+KKM+NQET+L++R+ K+ +  KK  ++NK +E+ N+M   
Sbjct:    61 REAANQVVSQWKTMSVMDKTKKMVNQETFLQQRITKATESWKKLRKENKELEMKNIMFDC 120

Query:   121 HLGKK-TDDFNINELQGLVWLMEERKKDLRKRMDYYEQIN 159
               GK         EL+   +++E++ KD+ +R++  ++ N
Sbjct:   121 LSGKTLVSSIEKTELRDFGYVIEQQLKDVNRRIEILKRNN 160

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2143769 AGL90 "AGAMOUS-like 90" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
 Identities = 54/151 (35%), Positives = 85/151 (56%)

Query:     4 KKVKLNWIANDSARKASXXXXXXXXXXXXSELTTLCDVNAFIIIYSPDESEPAMWPSRPV 63
             KKVKL+ IAN+ +RK S             EL+TLC V A  +IYSP    P  WPSR  
Sbjct:     2 KKVKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query:    64 VEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQFHLG 123
              +++ ++F  MP   +++KMM+QET+L ER+ K+++QLK  + +N+ ++V   M     G
Sbjct:    62 AKKVASKFLEMPRTARTRKMMDQETHLMERITKAKEQLKNLAAENRELQVRRFMFDCVEG 121

Query:   124 KKTD-DFNINELQGLVWLMEERKKDLRKRMD 153
             K +   ++  +LQ L+  M      L  R++
Sbjct:   122 KMSQYRYDAKDLQDLLSCMNLYLDQLNGRIE 152

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2146794 AGL36 "AGAMOUS-like 36" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 7.6e-21, Sum P(2) = 7.6e-21
 Identities = 54/135 (40%), Positives = 79/135 (58%)

Query:     4 KKVKLNWIANDSARKASXXXXXXXXXXXXSELTTLCDVNAFIIIYSPDESEPAMWPSRPV 63
             KKVKL+ IAN+ +RK S             EL+TLC V A  +IYSP    P  WPSR  
Sbjct:     2 KKVKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query:    64 VEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQFHLG 123
              +++ +RF  MP   ++KKMM+QETYL ER+ K+++QLK  + +N+ ++V   M     G
Sbjct:    62 AKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQVRRFMFDCVEG 121

Query:   124 KKTD-DFNINELQGL 137
             K +   ++  +LQ L
Sbjct:   122 KMSQYHYDAKDLQDL 136

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2206325 AGL38 "AGAMOUS-like 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 4.5e-18, P = 4.5e-18
 Identities = 48/153 (31%), Positives = 90/153 (58%)

Query:     3 RKKVKLNWIANDSARKASXXXXXXXXXXXXSELTTLCDVNAFIIIYSPDESEPAMWPSRP 62
             ++K+KL+ I N  +RK +            +EL TLC V A  ++YSP  S P  WPSR 
Sbjct:     2 KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query:    63 VVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQFHL 122
              VE ++++F  +  ++++KKM++QET++ +R+ K ++QL+K   +N   ++  LM     
Sbjct:    62 GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCLK 121

Query:   123 GKKTDDFNIN--ELQGLVWLMEERKKDLRKRMD 153
             G+ T+ +N++  +LQ L   +++    L +R++
Sbjct:   122 GE-TNVYNLDGRDLQDLSLYIDKYLNGLTRRIE 153

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2053608 AGL95 "AGAMOUS-like 95" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 2.8e-17, P = 2.8e-17
 Identities = 44/119 (36%), Positives = 67/119 (56%)

Query:    38 LCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKS 97
             LC V A II++SP E EP +WPS      LL  F  +P+++K KK M+ E YLKE+  K 
Sbjct:    31 LCAVKACIIMFSPHEVEPMVWPSFEKARDLLDGFFALPDIKKKKKQMSLEMYLKEKTKKV 90

Query:    98 QDQLKKNSRKNKVMEVSNLMEQFHLGKKTDDFNINELQGLVWLMEERKKDLRKRMDYYE 156
              +Q  K  RK+       LM + H G++ DD +++E+  L+    E    LRK +++ +
Sbjct:    91 HEQFMKTQRKHMDHVTDQLMVELHRGRRLDDLDLSEINALISFSRENIILLRKELEFVQ 149

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2206280 PHE1 "PHERES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 1.0e-16, P = 1.0e-16
 Identities = 42/115 (36%), Positives = 72/115 (62%)

Query:     3 RKKVKLNWIANDSARKASXXXXXXXXXXXXSELTTLCDVNAFIIIYSPDESEPAMWPSRP 62
             R K+KL++I NDS RK +            +EL TLC V+A  +I SP  S    WPSR 
Sbjct:     2 RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query:    63 VVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLM 117
              VE+++++F     ++++KKM++QET+L++R+ K  ++L+K   +N+  ++ +LM
Sbjct:    62 GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLM 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;NAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0090406 "pollen tube" evidence=IDA

TAIR|locus:2074494 AT3G05860 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 47/155 (30%), Positives = 78/155 (50%)

Query:     1 MTRKKVKLNWIANDSARKASXXXXXXXXXXXXSELTTLCDVNAFIIIYSPDESEPAMWPS 60
             MTRKK+ L++I N+S RKA+             EL+ LC + A  +IYSP  S P +WPS
Sbjct:     1 MTRKKLNLSYITNESMRKATFNKRKKGLVKKIHELSVLCGIEACAVIYSPFNSNPEVWPS 60

Query:    61 RPVVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQF 120
                V+ ++  F  + ++E+ KKM++ E ++++ + K+ +   K    N    +   M Q 
Sbjct:    61 NSEVKNVMENFEMLTKLEQEKKMVSHEGFIRQNISKTMESNNKKMIDNAERTMKEAMFQL 120

Query:   121 HLGKKTDDFNINELQGLVWLMEERKKDLRKRMDYY 155
              L  K +  N         L +  ++DL K +D Y
Sbjct:   121 -LSGKGEKLN---------LTDRNREDLCKYIDQY 145

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2028591 AGL92 "AGAMOUS-like 92" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 8.0e-15, P = 8.0e-15
 Identities = 48/153 (31%), Positives = 82/153 (53%)

Query:     3 RKKVKLNWIANDSARKASXXXXXXXXXXXXSELTTLCDVNAFIIIYSPDESEPAMWPSRP 62
             R K KL  I +   R+A+             ELTTLCD+ A  +IYSP E+ P +WPS  
Sbjct:     2 RTKTKLVLIPDRHFRRATFRKRNAGIRKKLHELTTLCDIKACAVIYSPFEN-PTVWPSTE 60

Query:    63 VVEQLLARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQFHL 122
              V+++++ F   P  E+SK MM+ ET+L++++ K Q++L+   R+N+  ++ + M     
Sbjct:    61 GVQEVISEFMEKPATERSKTMMSHETFLRDQITKEQNKLESLRRENRETQLKHFMFDCVG 120

Query:   123 GKKTDD-FNINELQGLVWLMEERKKDLRKRMDY 154
             GK ++  +   +LQ L    ++    L  R  +
Sbjct:   121 GKMSEQQYGARDLQDLSLFTDQYLNQLNARKKF 153

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_VI001056 hypothetical protein (469 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	446
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	2e-27
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	2e-21
smart00432	59	smart00432, MADS, MADS domain	1e-17
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	9e-11
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	4e-10

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  104 bits (261), Expect = 2e-27
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 2  TRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSR 61
           RKK+K+  I N   R  +  KR+ GL KK SEL+TLC     +I+YSP       WPS 
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 62 PVVEQLLARFNNMPEMEKSKKMMN 85
            VE +++RF  +  +E+ KK ++
Sbjct: 61 E-VEGVISRFEVLSALERKKKAVD 83

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 86.8 bits (216), Expect = 2e-21
 Identities = 22/59 (37%), Positives = 34/59 (57%)

Query: 2  TRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPS 60
           R K+++  I N ++R+ +  KR+ GL KK SEL+ LCD    +I++SP       W S
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score = 76.1 bits (188), Expect = 1e-17
 Identities = 19/59 (32%), Positives = 31/59 (52%)

Query: 2  TRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPS 60
           R+K+++  I N + R+ +  KR+ GL KK  EL+ LCD    +I++SP          
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 57.6 bits (140), Expect = 9e-11
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 3  RKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSP 50
          R K+++  I N + R+ +  KR+ GLLKK  EL+ LCD    +II+S 
Sbjct: 2  RGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSS 49

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 54.7 bits (132), Expect = 4e-10
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 11 IANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPD 51
          I N S R+ +  KR+ G+ KK  EL+ LCD    +II+S  
Sbjct: 3  IENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSST 43

Length = 51

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	446
KOG0014	195	consensus MADS box transcription factor [Transcrip	99.98
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.94
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.93
smart00432	59	MADS MADS domain.	99.92
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.91
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.83
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.58
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.11
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	97.82

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=99.98  E-value=5.5e-33  Score=256.99  Aligned_cols=150  Identities=29%  Similarity=0.466  Sum_probs=115.6

Q ss_pred             CCccceeeEecCCccchhhHhhhcchhhhhhhhhhhhccCCcEEEEEeCCCCCCCccCCCCchHHHHHHHhcCCchhhhh
Q 038848            1 MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFNNMPEMEKS   80 (446)
Q Consensus         1 MgRkKIkIK~IeNesaRqVTFsKRR~GLfKKAsELStLCGaeVAVIVFSP~GK~pefWPS~psVe~VIdRYk~lpe~er~   80 (446)
                      |||+||+|++|+|++.|+|||+|||+||||||+||||||||+||||||||+|++|+|||++.+|++|+++|...++.++.
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999888899999999999998888


Q ss_pred             hhccchhhHHHHH-HHHHHHHHHHH--------------HHHHHHHHHHHHHHhhccCCCCCCCCH-HHHHHHHHHHHHH
Q 038848           81 KKMMNQETYLKER-VVKSQDQLKKN--------------SRKNKVMEVSNLMEQFHLGKKTDDFNI-NELQGLVWLMEER  144 (446)
Q Consensus        81 KKm~dqEeyLkqr-IeKLqeQLkKL--------------kKKNrEkEl~elm~q~~~Ge~LddLSl-eELqqLe~~LEek  144 (446)
                      ++.++.+.++... +.++..+..+.              ++.....+......+.+.+.++.+++. ++|..++..|+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~  160 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS  160 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence            8888888877644 22221111111              111111111111233466778888888 7888888777776


Q ss_pred             HHHHHH
Q 038848          145 KKDLRK  150 (446)
Q Consensus       145 LK~VRk  150 (446)
                      +..++.
T Consensus       161 ~~~~~~  166 (195)
T KOG0014|consen  161 LHNSRS  166 (195)
T ss_pred             hcCCCC
Confidence            655553

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.94  E-value=5.5e-28  Score=200.20  Aligned_cols=81  Identities=41%  Similarity=0.731  Sum_probs=76.7

Q ss_pred             CccceeeEecCCccchhhHhhhcchhhhhhhhhhhhccCCcEEEEEeCCCCCCCccCCCCchHHHHHHHhcCCchhhhhh
Q 038848            2 TRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFNNMPEMEKSK   81 (446)
Q Consensus         2 gRkKIkIK~IeNesaRqVTFsKRR~GLfKKAsELStLCGaeVAVIVFSP~GK~pefWPS~psVe~VIdRYk~lpe~er~K   81 (446)
                      ||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+.++|||+.. ++.+|++|..++..++.+
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~   79 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSE-VEGVISRFEVLSALERKK   79 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHH-HHHHHHHHhhcCHhhhhc
Confidence            7999999999999999999999999999999999999999999999999999999998776 999999999999887765


Q ss_pred             hc
Q 038848           82 KM   83 (446)
Q Consensus        82 Km   83 (446)
                      +.
T Consensus        80 ~~   81 (83)
T cd00266          80 KA   81 (83)
T ss_pred             cC
Confidence            54

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.93  E-value=6.1e-27  Score=191.56  Aligned_cols=73  Identities=33%  Similarity=0.612  Sum_probs=69.0

Q ss_pred             CccceeeEecCCccchhhHhhhcchhhhhhhhhhhhccCCcEEEEEeCCCCCCCccCCCCchHHHHHHHhcCCch
Q 038848            2 TRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFNNMPE   76 (446)
Q Consensus         2 gRkKIkIK~IeNesaRqVTFsKRR~GLfKKAsELStLCGaeVAVIVFSP~GK~pefWPS~psVe~VIdRYk~lpe   76 (446)
                      ||+||+|++|+|+++|++||+|||+||||||.|||+||||+||+|||||+|++++|  +++++++||+||++.+.
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f--~s~s~~~vl~ry~~~~~   73 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEF--SSPSMEKIIERYQKTSG   73 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEe--cCCCHHHHHHHHHhccc
Confidence            89999999999999999999999999999999999999999999999999999998  45778999999998654

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.92  E-value=1e-25  Score=176.15  Aligned_cols=58  Identities=33%  Similarity=0.617  Sum_probs=57.3

Q ss_pred             CccceeeEecCCccchhhHhhhcchhhhhhhhhhhhccCCcEEEEEeCCCCCCCccCC
Q 038848            2 TRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWP   59 (446)
Q Consensus         2 gRkKIkIK~IeNesaRqVTFsKRR~GLfKKAsELStLCGaeVAVIVFSP~GK~pefWP   59 (446)
                      ||+||+|++|+|+++|++||+|||.||||||+||||||||+||+|||||+|+.++|||
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~   58 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS   58 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccC
Confidence            7999999999999999999999999999999999999999999999999999999997

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.91  E-value=3e-25  Score=173.49  Aligned_cols=59  Identities=37%  Similarity=0.723  Sum_probs=57.6

Q ss_pred             CccceeeEecCCccchhhHhhhcchhhhhhhhhhhhccCCcEEEEEeCCCCCCCccCCC
Q 038848            2 TRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPS   60 (446)
Q Consensus         2 gRkKIkIK~IeNesaRqVTFsKRR~GLfKKAsELStLCGaeVAVIVFSP~GK~pefWPS   60 (446)
                      ||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+.++|||+
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            79999999999999999999999999999999999999999999999999999999973

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.83  E-value=3.8e-22  Score=151.96  Aligned_cols=49  Identities=47%  Similarity=0.729  Sum_probs=44.4

Q ss_pred             EecCCccchhhHhhhcchhhhhhhhhhhhccCCcEEEEEeCCCCCCCcc
Q 038848            9 NWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAM   57 (446)
Q Consensus         9 K~IeNesaRqVTFsKRR~GLfKKAsELStLCGaeVAVIVFSP~GK~pef   57 (446)
                      |+|+|+++|++||+|||.||||||.||||||||+||||||||+|++++|
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f   49 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTF   49 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEE
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEe
Confidence            6899999999999999999999999999999999999999999998875

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.58  E-value=3.6e-16  Score=155.02  Aligned_cols=65  Identities=29%  Similarity=0.508  Sum_probs=59.2

Q ss_pred             CccceeeEecCCccchhhHhhhcchhhhhhhhhhhhccCCcEEEEEeCCCCCCCccCCCCchHHHHH
Q 038848            2 TRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLL   68 (446)
Q Consensus         2 gRkKIkIK~IeNesaRqVTFsKRR~GLfKKAsELStLCGaeVAVIVFSP~GK~pefWPS~psVe~VI   68 (446)
                      ||+||+|+||+|+..|.+||+|||.|+||||+|||||+|.+|-|+|.|..|-+|.|  ..+..+.||
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTF--aTpKLep~i  127 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF--ATPKLEPMI  127 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEe--ccccccccc
Confidence            69999999999999999999999999999999999999999999999999999998  455444443

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.11  E-value=2.8e-11  Score=124.80  Aligned_cols=59  Identities=25%  Similarity=0.436  Sum_probs=57.2

Q ss_pred             CCccceeeEecCCccchhhHhhhcchhhhhhhhhhhhccCCcEEEEEeCCCCCCCccCC
Q 038848            1 MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWP   59 (446)
Q Consensus         1 MgRkKIkIK~IeNesaRqVTFsKRR~GLfKKAsELStLCGaeVAVIVFSP~GK~pefWP   59 (446)
                      |+|+|+.|.+|+|+.+|.|||+|||.||+|||.||++|.|.+|.++|.|..|+++.|+.
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~t  139 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTT  139 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecC
Confidence            78999999999999999999999999999999999999999999999999999999854

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=97.82  E-value=7.1e-05  Score=63.84  Aligned_cols=58  Identities=21%  Similarity=0.319  Sum_probs=45.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038848           88 TYLKERVVKSQDQLKKNSRKNKVMEVSNLMEQFHLGKKTDDFNINELQGLVWLMEERKKDLRKRMDYY  155 (446)
Q Consensus        88 eyLkqrIeKLqeQLkKLkKKNrEkEl~elm~q~~~Ge~LddLSleELqqLe~~LEekLK~VRkRke~L  155 (446)
                      +++..++.+++.+++.++..          .+.+.|++|++|+++||..|+..|+..|+.||.||..+
T Consensus        15 e~~~~e~~~L~~~~~~L~~~----------~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~   72 (100)
T PF01486_consen   15 EELQQEIAKLRKENESLQKE----------LRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQL   72 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----------HhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            34555555555555555433          23577999999999999999999999999999999865

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	446
1hbx_A	92	SRF, serum response factor; gene regulation, trans	7e-12
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	2e-11
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	2e-11
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	3e-11
1egw_A	77	MADS box transcription enhancer factor 2, polypept	9e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	6e-04

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score = 60.6 bits (147), Expect = 7e-12
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 1  MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSP 50
            R K+K+ +I N   R  +  KRK G++KK  EL+TL      +++ S 
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASE 59

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score = 59.5 bits (144), Expect = 2e-11
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 1  MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSP 50
            R K+K+ +I N   R  +  KRK G++KK  EL+TL      +++ S 
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASE 58

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score = 59.5 bits (144), Expect = 2e-11
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query: 1  MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSP 50
            R+K+++ +I N + R  +  KRK G++KK  EL+ L      +++ S 
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSE 65

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score = 58.6 bits (142), Expect = 3e-11
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 12/96 (12%)

Query: 3  RKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSP-----DESEPAM 57
          RKK+++  I ++  R+ +  KRK GL+KK  EL+ LCD    +II++        +   M
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61

Query: 58 WPSRPVVEQLLARFNNMPEMEKSKKMMNQETYLKER 93
                 +++L ++    E  +S+   +    L ++
Sbjct: 62 -------DKVLLKYTEYNEPHESRTNSDIVEALNKK 90

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score = 57.0 bits (138), Expect = 9e-11
 Identities = 19/48 (39%), Positives = 31/48 (64%)

Query: 3  RKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSP 50
          RKK+++  I ++  R+ +  KRK GL+KK  EL+ LCD    +II++ 
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNS 49

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 26/203 (12%), Positives = 66/203 (32%), Gaps = 40/203 (19%)

Query: 2   TRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSR 61
           TR K   ++++  +    SL    + L     E+ +L       +   P +    +  + 
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTP--DEVKSLL---LKYLDCRPQDLPREVLTTN 326

Query: 62  PVVEQLL-ARFNNMPEMEKSKKMMNQETYLKERVVKSQDQLKKNSRKN------------ 108
           P    ++     +      + K +N +  L   +  S + L+    +             
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDK-LTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385

Query: 109 ----KVM----------EVSNLMEQFH----LGKKTDDF--NINELQGLVWLMEERKKDL 148
                ++          +V  ++ + H    + K+  +   +I  +   + +  E +  L
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 149 RKRM-DYYEQINPPPQESLPPPP 170
            + + D+Y        + L PP 
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPY 468

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.8 bits (92), Expect = 6e-04
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 19/90 (21%)

Query: 47  IYSPDE--SEP-AM--WPSRPVVEQLLARFNNMPEMEKSKKMMNQET---YLKERVVKSQ 98
           I   D    EP ++  W  R   E+   R   +    K  +   +E     L+E   +  
Sbjct: 74  IAQADRLTQEPESIRKW--R---EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS 128

Query: 99  DQLKKNSRKNKVMEVSNLMEQFHLGKKTDD 128
           +Q++KN   N++ +     + F   +   D
Sbjct: 129 EQVEKNKINNRIAD-----KAF-YQQPDAD 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	446
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	99.96
1egw_A	77	MADS box transcription enhancer factor 2, polypept	99.96
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	99.95
1hbx_A	92	SRF, serum response factor; gene regulation, trans	99.94
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	99.93

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=99.96  E-value=8e-31  Score=219.25  Aligned_cols=80  Identities=28%  Similarity=0.518  Sum_probs=73.5

Q ss_pred             CccceeeEecCCccchhhHhhhcchhhhhhhhhhhhccCCcEEEEEeCCCCCCCccCCCCchHHHHHHHhcCCchhhhhh
Q 038848            2 TRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFNNMPEMEKSK   81 (446)
Q Consensus         2 gRkKIkIK~IeNesaRqVTFsKRR~GLfKKAsELStLCGaeVAVIVFSP~GK~pefWPS~psVe~VIdRYk~lpe~er~K   81 (446)
                      ||+||+|++|+|+++|+|||+|||+||||||.||||||||+||||||||+|++++|  ++++|++||+||+..++..+.+
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f--~s~~~~~il~rY~~~~~~~~~~   78 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY--ASTDMDKVLLKYTEYNEPHESR   78 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEE--ESSCHHHHHHHHHHCCSCCCEE
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEe--CCCCHHHHHHHHHhcCcccccC
Confidence            89999999999999999999999999999999999999999999999999999996  3489999999999987765544


Q ss_pred             hc
Q 038848           82 KM   83 (446)
Q Consensus        82 Km   83 (446)
                      ..
T Consensus        79 ~~   80 (90)
T 3p57_A           79 TN   80 (90)
T ss_dssp             CH
T ss_pred             Ch
Confidence            33

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=99.96  E-value=3.4e-30  Score=210.01  Aligned_cols=73  Identities=29%  Similarity=0.558  Sum_probs=68.3

Q ss_pred             CccceeeEecCCccchhhHhhhcchhhhhhhhhhhhccCCcEEEEEeCCCCCCCccCCCCchHHHHHHHhcCCch
Q 038848            2 TRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFNNMPE   76 (446)
Q Consensus         2 gRkKIkIK~IeNesaRqVTFsKRR~GLfKKAsELStLCGaeVAVIVFSP~GK~pefWPS~psVe~VIdRYk~lpe   76 (446)
                      ||+||+|++|+|+++|+|||+|||+||||||.||||||||+||||||||.|++++|  ++++|++||+||+..++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~--~s~~~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY--ASTDMDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEE--ESSCHHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeC--CCCCHHHHHHHHHhccC
Confidence            89999999999999999999999999999999999999999999999999999997  45789999999988654

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=99.95  E-value=3.3e-29  Score=213.01  Aligned_cols=71  Identities=25%  Similarity=0.469  Sum_probs=68.0

Q ss_pred             CCccceeeEecCCccchhhHhhhcchhhhhhhhhhhhccCCcEEEEEeCCCCCCCccCCCCchHHHHHHHhcC
Q 038848            1 MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFNN   73 (446)
Q Consensus         1 MgRkKIkIK~IeNesaRqVTFsKRR~GLfKKAsELStLCGaeVAVIVFSP~GK~pefWPS~psVe~VIdRYk~   73 (446)
                      |||+||+|++|+|+.+|+|||+|||+||||||.||||||||+||||||||.|++|+|  ++|+++.||++|..
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f--~sps~~~il~r~~G   86 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTF--STPKFEPIVTQQEG   86 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEE--ECTTTTHHHHSHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCccee--cCCCHHHHHHHhhC
Confidence            899999999999999999999999999999999999999999999999999999998  56789999998865

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=99.94  E-value=1.3e-28  Score=206.65  Aligned_cols=70  Identities=24%  Similarity=0.399  Sum_probs=66.4

Q ss_pred             CCccceeeEecCCccchhhHhhhcchhhhhhhhhhhhccCCcEEEEEeCCCCCCCccCCCCchHHHHHHHhc
Q 038848            1 MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFN   72 (446)
Q Consensus         1 MgRkKIkIK~IeNesaRqVTFsKRR~GLfKKAsELStLCGaeVAVIVFSP~GK~pefWPS~psVe~VIdRYk   72 (446)
                      |||+||+|++|+|+.+|+|||+|||+||||||.||||||||+||||||||.|++|+|  ++++|+.||++|.
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f--~s~~~~~~i~~~~   79 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF--ATRKLQPMITSET   79 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEE--ECGGGGGGTSSHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEe--cCCCHHHHHhhhc
Confidence            999999999999999999999999999999999999999999999999999999998  5688999988654

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=99.93  E-value=3.7e-28  Score=207.60  Aligned_cols=69  Identities=25%  Similarity=0.403  Sum_probs=65.6

Q ss_pred             CCccceeeEecCCccchhhHhhhcchhhhhhhhhhhhccCCcEEEEEeCCCCCCCccCCCCchHHHHHHHh
Q 038848            1 MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARF   71 (446)
Q Consensus         1 MgRkKIkIK~IeNesaRqVTFsKRR~GLfKKAsELStLCGaeVAVIVFSP~GK~pefWPS~psVe~VIdRY   71 (446)
                      |||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||.|++|+|  ++++|+.||+++
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f--~s~~~~~vi~~~   77 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF--ATRKLQPMITSE   77 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEE--ECGGGGGGTSSH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeee--cCccHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999998  567888888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	446
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	1e-16
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	2e-16
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	8e-15

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.0 bits (177), Expect = 1e-16
 Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 3  RKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRP 62
          RKK+++  I ++  R+ +  KRK GL+KK  EL+ LCD    +II++   ++   + S  
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSS-NKLFQYAS-T 59

Query: 63 VVEQLLARF 71
           ++++L ++
Sbjct: 60 DMDKVLLKY 68

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.7 bits (176), Expect = 2e-16
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 3  RKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRP 62
          R+K+++ +I N + R  +  KRK G++KK  EL+ L      +++ S   +      S P
Sbjct: 4  RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSE--TGLVYTFSTP 61

Query: 63 VVEQLLARFNNMPEMEK 79
            E ++ +      ++ 
Sbjct: 62 KFEPIVTQQEGRNLIQA 78

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (165), Expect = 8e-15
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 3  RKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSP 50
          R K+K+ +I N   R  +  KRK G++KK  EL+TL      +++ S 
Sbjct: 4  RVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASE 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	446
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	99.96
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	99.94
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	99.94

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-30  Score=207.57  Aligned_cols=70  Identities=29%  Similarity=0.570  Sum_probs=66.8

Q ss_pred             CccceeeEecCCccchhhHhhhcchhhhhhhhhhhhccCCcEEEEEeCCCCCCCccCCCCchHHHHHHHhcC
Q 038848            2 TRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFNN   73 (446)
Q Consensus         2 gRkKIkIK~IeNesaRqVTFsKRR~GLfKKAsELStLCGaeVAVIVFSP~GK~pefWPS~psVe~VIdRYk~   73 (446)
                      ||+||+|++|+|+..|+|||+|||+||||||.||||||||+||||||||+|++++|  ++|++++||+||+.
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f--~s~~~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY--ASTDMDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEE--ESSCHHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEe--eCCCHHHHHHHHhc
Confidence            89999999999999999999999999999999999999999999999999999886  45899999999964

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.4e-29  Score=206.45  Aligned_cols=76  Identities=24%  Similarity=0.437  Sum_probs=70.7

Q ss_pred             CccceeeEecCCccchhhHhhhcchhhhhhhhhhhhccCCcEEEEEeCCCCCCCccCCCCchHHHHHHHhcCCchhhh
Q 038848            2 TRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFNNMPEMEK   79 (446)
Q Consensus         2 gRkKIkIK~IeNesaRqVTFsKRR~GLfKKAsELStLCGaeVAVIVFSP~GK~pefWPS~psVe~VIdRYk~lpe~er   79 (446)
                      ||+||+|++|+|+..|+|||+|||.||||||.||||||||+||||||||+|++++|  ++|+|+.||+||+.....++
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f--~sp~v~~vl~r~~~~~~~~~   78 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTF--STPKFEPIVTQQEGRNLIQA   78 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEE--ECTTTTHHHHSHHHHHHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEec--cCCCHHHHHHHHhcccHHHH
Confidence            79999999999999999999999999999999999999999999999999999988  77999999999986544433

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.6e-29  Score=205.53  Aligned_cols=71  Identities=24%  Similarity=0.396  Sum_probs=68.6

Q ss_pred             CCccceeeEecCCccchhhHhhhcchhhhhhhhhhhhccCCcEEEEEeCCCCCCCccCCCCchHHHHHHHhcC
Q 038848            1 MTRKKVKLNWIANDSARKASLKKRKVGLLKKVSELTTLCDVNAFIIIYSPDESEPAMWPSRPVVEQLLARFNN   73 (446)
Q Consensus         1 MgRkKIkIK~IeNesaRqVTFsKRR~GLfKKAsELStLCGaeVAVIVFSP~GK~pefWPS~psVe~VIdRYk~   73 (446)
                      +||+||+|++|+|+..|+|||+|||.||||||+||||||||+||||||||.|++|+|  ++|+++.||++|..
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f--~s~~~~~vi~~~~~   72 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF--ATRKLQPMITSETG   72 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEE--ECGGGHHHHSSHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEe--eCCCHHHHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999999998  68999999999964