Citrus Sinensis ID: 038867

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-
MKNLQLHGEDLHARSKIEANNHTGFQAMTEEQVTGAGAEREIYMQDDLLDVDDASIFYADFPPLPDFPCMSSSSSSSSTPAAVKAITSSASSSSASSSSSAASWAVLRSDAEEDVDKKNHQDQSGDAATQPALSSTASMDISQATDTSIDGVGVDCMDVMENFVFMDLLDNNDLFDPSSIFNQDDSQPFEGYQQQQQQNQTQHEHRQQERDQELMMQSNNGDNSNEDGGASDDLAMVFLEWLKSNKETVSAEDLRNVKIKKSTIECAAKRLGGGKEAMKQLLKLILEWVQTNHLQKRRMREALLPASNNNNNLPYQQHFQDTFQNPNPNPNPNHNCNPIPPEPNPCFAQSSWIGQPSFIHDPATMVTGFPTPAVGYMGDSFANGMSNINGHGYAAPPSEYHMLETTRSWPNSQFGLASNYNSFSDNNLHPAPLHPQAFTGYGNQYPYPYLPGHGEQRLMRMGSSATKEARKKRMARQRRLSTHPRHQHHHNNQQNQLQGQNADQHARFGSDNCNPAAQANSGNWVFWPASAGGPAAVSPLSPVDRQPMQPQNYQRQPASDRRQGWKPEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYSFRFWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKYLIRGVKVRQPGPKSETKRTGKSQRNQHANPPSAAMGNGSSSSLQVPQTVK
cccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccHHHHcccEEHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccHHHHcccccccccccEEEEEEcccccEEEEEEEEEEEcccccEEEEEccHHHHHHHcccccccEEEEEEEcccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccc
cccEEEccccHHcccccccccccccccccHHHHHccccccEEEcccccccccccHHHHccccccccccccccccccccccccccEEEEEcccccccccccHHHHHHEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccHHHcccccccccccccccccccccHHHccHHHHHHcccccccHHHHHccHccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHccEcHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccHHHccccccccccccccccHccHHHHHEEccHccccccccEEEcHHHHHHHcccccccccEEEEEEEcccccEEEEEEEEEEcccccccEEEEcccHHHHHHcccccccEEEEEEccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccc
mknlqlhgedlharskieannhtgfqamteeqvtgagaereiymqddlldvddasifyadfpplpdfpcmsssssssstpAAVKAITssassssasssssaASWAVLRSDaeedvdkknhqdqsgdaatqpalsstasmdisqatdtsidgvgvDCMDVMENFVfmdlldnndlfdpssifnqddsqpfegyQQQQQQNQTQHEHRQQERDQELMMqsnngdnsnedggasDDLAMVFLEWLKSnketvsaedlrnvkikKSTIECAAKRLGGGKEAMKQLLKLILEWVQTNHLQKRRMREallpasnnnnnlpyqqhfqdtfqnpnpnpnpnhncnpippepnpcfaqsswigqpsfihdpatmvtgfptpavgymgdsfangmsninghgyaappseyhmlettrswpnsqfglasnynsfsdnnlhpaplhpqaftgygnqypypylpghgeqrlmrmgssaTKEARKKRMARQRrlsthprhqhhhnnqqnqlqgqnadqharfgsdncnpaaqansgnwvfwpasaggpaavsplspvdrqpmqpqnyqrqpasdrrqgwkpekNLRFLLQKVLkqsdvgnlgrivlpkkeaethlpeleardgisIAMEDIGTSRVWNMRysfrfwpnnksrMYLLENTGdfvkanglqegdFIVIYSDVKCGKYLIrgvkvrqpgpksetkrtgksqrnqhanppsaamgngsssslqvpqtvk
mknlqlhgedlhARSKIEANNHTGFQAMTEEQVTGAGAEREIYMQDDLLDVDDASIFYADFPPLPDFPCMSSSSSSSSTPAAVKAITssassssasssssaASWAVLRSDAEEDVDKknhqdqsgdaatqpaLSSTASMDISQATDTSIDGVGVDCMDVMENFVFMDLLDNNDLFDPSSIFNQDDSQPFEGYQQQQQQNQTQHEHRQQERDQELMMQSNNGDNSNEDGGASDDLAMVFLEWLKSnketvsaedlrnvkikkstiECAAKRLGGGKEAMKQLLKLILEWVQTNHLQKRRMREALLPASNNNNNLPYQQHFQDTFQNPNPNPNPNHNCNPIPPEPNPCFAQSSWIGQPSFIHDPATMVTGFPTPAVGYMGDSFANGMSNINGHGYAAPPSEYHMLETTRSWPNSQFGLASNYNSFSDNNLHPAPLHPQAFTGYGNQYPYPYLPGHGEQRLMRMGSSATKEARKKRMARQRRLSthprhqhhhnnqqNQLQGQNADQHARFGSDNCNPAAQANSGNWVFWPASAGGPAAVSPLSPVDRQPMQPQnyqrqpasdrrqgwkpEKNLRFLLQKvlkqsdvgnlgrivlpkkeaethlpeleardgisiameDIGTSRVWNMRYSFRFWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKYLirgvkvrqpgpksetkrtgksqrnqhanppsaamgngsssslqvpqtvk
MKNLQLHGEDLHARSKIEANNHTGFQAMTEEQVTGAGAEREIYMQDDLLDVDDASIFYADFPPLPDFPCMssssssssTPAAVKAITssassssasssssaasWAVLRSDAEEDVDKKNHQDQSGDAATQPALSSTASMDISQATDTSIDGVGVDCMDVMEnfvfmdlldnndlfdPSSIFNQDDSQPFEGYqqqqqqnqtqhehrqqerdqELMMQsnngdnsnedggasddLAMVFLEWLKSNKETVSAEDLRNVKIKKSTIECAAKRLGGGKEAMKQLLKLILEWVQTNHLQKRRMREALLPASnnnnnLPYQQHFQDTFQnpnpnpnpnhncnpippepnpCFAQSSWIGQPSFIHDPATMVTGFPTPAVGYMGDSFANGMSNINGHGYAAPPSEYHMLETTRSWPNSQFGLASNYNSFSDNNLHPAPLHPQAFTGYGNQYPYPYLPGHGEQRLMRMGSSATKEARKKRMARQRRLSTHPRhqhhhnnqqnqlqgqnadqhARFGSDNCNPAAQANSGNWVFWpasaggpaavsplspVDRQPMQPQNYQRQPASDRRQGWKPEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYSFRFWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKYLIRGVKVRQPGPKSETKRTGKSQRNQHANPPSAAMGNGSSSSLQVPQTVK
**************************************EREIYMQDDLLDVDDASIFYADFPPLP**********************************************************************************SIDGVGVDCMDVMENFVFMDLLDNNDLFD*********************************************************LAMVFLEWLKSNKETVSAEDLRNVKIKKSTIECAAKRLGGGKEAMKQLLKLILEWVQTNHL***************************************************CFAQSSWIGQPSFIHDPATMVTGFPTPAVGYMGDSFANGMSNINGHGYAA****YHMLET***W***QFGLASNY************LHPQAFTGYGNQYPYPYL***********************************************************************GNWVFWPA****************************************NLRFLLQKVLKQSDVGNLGRIVLPKK****HLPELEARDGISIAMEDIGTSRVWNMRYSFRFWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKYLIRGVKV*******************************************
******H*EDLHARSKIEANNHTGFQ**TEE*****GAEREIYMQDDLLDVDDASIFYADFP*******************************************************************************************VDCMDVMENFVFMDLLDNNDLFDPSSIFNQD*************************************************LAMVFLEWLKSNKETVSAEDLRNVKIKKS*****************QLLKLILEWVQ**************************************************************************************************************************************************************************************************************************************************************************************KNLRFLLQKV***********IVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYSFRFWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKYLIRG**********************************************
MKNLQLHGEDLHARSKIEANNHTGFQAMTEEQVTGAGAEREIYMQDDLLDVDDASIFYADFPPLPDFPC************************************************************************SQATDTSIDGVGVDCMDVMENFVFMDLLDNNDLFDPSSIFNQDDSQ*************************ELMMQSNNGDNSNEDGGASDDLAMVFLEWLKSNKETVSAEDLRNVKIKKSTIECAAKRLGGGKEAMKQLLKLILEWVQTNHLQKRRMREALLPASNNNNNLPYQQHFQDTFQNPNPNPNPNHNCNPIPPEPNPCFAQSSWIGQPSFIHDPATMVTGFPTPAVGYMGDSFANGMSNINGHGYAAPPSEYHMLETTRSWPNSQFGLASNYNSFSDNNLHPAPLHPQAFTGYGNQYPYPYLPGHGEQRLM***********************************************RFGSDNCNPAAQANSGNWVFWPASAGGPAAVSPLSPVDRQ*****************GWKPEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYSFRFWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKYLIRGVKVR******************************************
********EDLHARSKIEANNHTGFQAMTEEQVTGAGAEREIYMQDDLLDVDDASIFYADFPPLPDFPC**************K*******************************************************************VGVDCMDVMENFVFMDLLDNNDLFDPSSIFNQDDSQPFEGYQQQQQQNQT*****************************SDDLAMVFLEWLKSNKETVSAEDLRNVKIKKSTIECAAKRLGGGKEAMKQLLKLILEWVQTNHLQKR*************************FQNPNPNPNPNHNCNPIPPEPNPCFAQSSWIGQPSFIHDPATMVTGFPTPAVGYMGDSFANGMSNINGHGYAAPPSEYHMLETTRSWPNSQFGLASNYNSFSDNNLHPAPLHPQAFTGYGNQYPYPYLPGHGEQRLMRMGSSATKEARKKRMARQRRLSTHPRH***************************NP*AQANSGNW****A**************************************EKNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYSFRFWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKYLIRGVKVRQ*****************************************
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MKNLQLHGEDLHARSKIEANNHTGFQAMTEEQVTGAGAEREIYMQDDLLDVDDASIFYADFPPLPDFPCMSSSSSSSSTPAAVKAITSSASSSSASSSSSAASWAVLRSDAEEDVDKKNHQDQSGDAATQPALSSTASMDISQATDTSIDGVGVDCMDVMENFVFMDLLDNNDLFDPSSIFNQDDSQPFEGYQQQQQQNQTQHEHRQQERDQELMMQSNNGDNSNEDGGASDDLAMVFLEWLKSNKETVSAEDLRNVKIKKSTIECAAKRLGGGKEAMKQLLKLILEWVQTNHLQKRRMREALLPASNNNNNLPYQQHFQDTFQNPNPNPNPNHNCNPIPPEPNPCFAQSSWIGQPSFIHDPATMVTGFPTPAVGYMGDSFANGMSNINGHGYAAPPSEYHMLETTRSWPNSQFGLASNYNSFSDNNLHPAPLHPQAFTGYGNQYPYPYLPGHGEQRLMRMGSSATKEARKKRMARQRRLSTHPRHQHHHNNQQNQLQGQNADQHARFGSDNCNPAAQANSGNWVFWPASAGGPAAVSPLSPVDRQPMQPQNYQRQPASDRRQGWKPEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYSFRFWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKYLIRGVKVRQPGPKSETKRTGKSQRNQHANPPSAAMGNGSSSSLQVPQTVK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query721 2.2.26 [Sep-21-2011]
Q01593720 B3 domain-containing tran yes no 0.854 0.855 0.526 1e-152
P26307691 Regulatory protein vivipa N/A no 0.715 0.746 0.395 6e-91
P37398727 B3 domain-containing prot yes no 0.600 0.595 0.412 3e-87
Q9LW31313 B3 domain-containing tran no no 0.178 0.412 0.522 2e-31
Q7XKC4438 Putative B3 domain-contai no no 0.153 0.253 0.522 2e-31
Q7XKC5433 B3 domain-containing prot no no 0.153 0.256 0.504 5e-29
Q6Z1Z3362 B3 domain-containing prot no no 0.144 0.287 0.518 1e-27
A4LBC0402 B3 domain-containing prot no no 0.140 0.251 0.557 5e-27
Q1PFR7363 B3 domain-containing tran no no 0.173 0.344 0.461 9e-27
Q8W4L5 790 B3 domain-containing tran no no 0.199 0.182 0.354 5e-16
>sp|Q01593|ABI3_ARATH B3 domain-containing transcription factor ABI3 OS=Arabidopsis thaliana GN=ABI3 PE=1 SV=1 Back     alignment and function desciption
 Score =  539 bits (1388), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 381/723 (52%), Positives = 442/723 (61%), Gaps = 107/723 (14%)

Query: 46  DDLLDVDDASIFYADFPPLPDFPCMSSSSSSSSTPAAVKAITSSASSSSASSSSSAAS-- 103
           DDL+   D SIFY D P LPDFPCMSSSSSSS++PA V AI SSASSSSA+SSS++++  
Sbjct: 58  DDLIVHHDPSIFYGDLPTLPDFPCMSSSSSSSTSPAPVNAIVSSASSSSAASSSTSSAAS 117

Query: 104 WAVLRSDAEEDVDKKNHQDQSGDAATQPALSSTASMDI--SQATDTSIDGVGVDCMDVME 161
           WA+LRSD E+    +N         +  AL STASM+I    +        G DC+D+ME
Sbjct: 118 WAILRSDGEDPTPNQNQYASGNCDDSSGALQSTASMEIPLDSSQGFGCGEGGGDCIDMME 177

Query: 162 NFVFMDLLDNNDLFDPSSIFNQDDSQPFEGYQQQQQQNQTQHEHRQQERDQELMMQSNNG 221
            F +MDLLD+N+ FD S+IF+QDD         Q      Q   RQ+++    MM++N+G
Sbjct: 178 TFGYMDLLDSNEFFDTSAIFSQDDDT-------QNPNLMDQTLERQEDQVVVPMMENNSG 230

Query: 222 DNS---NEDGGASDDLAMVFLEWLKSNKETVSAEDLRNVKIKKSTIECAAKRLGGGKEAM 278
            +    N      DDLA VFLEWLK+NKETVSAEDLR VKIKK+TIE AA+RLGGGKEAM
Sbjct: 231 GDMQMMNSSLEQDDDLAAVFLEWLKNNKETVSAEDLRKVKIKKATIESAARRLGGGKEAM 290

Query: 279 KQLLKLILEWVQTNHLQKRRMREALLPASNNNNNLPYQQHFQ-DTFQNPNPNPNPNHNCN 337
           KQLLKLILEWVQTNHLQ+RR        +    NL YQQ FQ D FQNPNPN N     +
Sbjct: 291 KQLLKLILEWVQTNHLQRRR-------TTTTTTNLSYQQSFQQDPFQNPNPNNNNLIPPS 343

Query: 338 PIPPEPNPCFAQSSWIGQP----SFIHDPATMVTGFPTPAVGYMGDSFANGMSNINGHGY 393
                   CF+ S+W+  P    +F+ DP     GF     GYM               Y
Sbjct: 344 D-----QTCFSPSTWVPPPPQQQAFVSDP-----GF-----GYMP-----------APNY 377

Query: 394 AAPPSEYHMLETTRSWP---------NSQFGL--ASNYNSFSDNNLHPAPLHPQAFTGYG 442
              P    +LE+  SWP         + QF +   S YN F D         P  F GY 
Sbjct: 378 PPQPEFLPLLESPPSWPPPPQSGPMPHQQFPMPPTSQYNQFGD---------PTGFNGYN 428

Query: 443 -NQYPYPYLPG--HGEQRLMRMGSSATKEARKKRMARQRRLSTHPRHQHHHNNQQNQLQG 499
            N Y YPY+P     +QRL+R+ SSATKEARKKRMARQRR  +H    HH +N  N    
Sbjct: 429 MNPYQYPYVPAGQMRDQRLLRLCSSATKEARKKRMARQRRFLSH----HHRHNNNNNNNN 484

Query: 500 QNADQHARFGSDNC-------NPAAQ-ANSGNWVFWPASAGGPAAVSP-----LSPVDRQ 546
            N     + G + C       NP A  A  G W++WP     P  + P     L  +DR 
Sbjct: 485 NNQQNQTQIG-ETCAAVAPQLNPVATTATGGTWMYWPNVPAVPPQLPPVMETQLPTMDRA 543

Query: 547 PMQPQNYQRQPASDRRQGWKPEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEA 606
                  ++Q   DRRQGWKPEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEA
Sbjct: 544 GSASAMPRQQVVPDRRQGWKPEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEA 603

Query: 607 RDGISIAMEDIGTSRVWNMRYSFRFWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDV 666
           RDGIS+AMEDIGTSRVWNMRY  RFWPNNKSRMYLLENTGDFVK NGLQEGDFIVIYSDV
Sbjct: 604 RDGISLAMEDIGTSRVWNMRY--RFWPNNKSRMYLLENTGDFVKTNGLQEGDFIVIYSDV 661

Query: 667 KCGKYLIRGVKVRQP-GPKSE-------TKRTGKSQRNQHANPPSAAMGNGSSSSLQVPQ 718
           KCGKYLIRGVKVRQP G K E       TKR  KSQRN + N PSA +   S +S    Q
Sbjct: 662 KCGKYLIRGVKVRQPSGQKPEAPPSSAATKRQNKSQRNINNNSPSANVVVASPTS----Q 717

Query: 719 TVK 721
           TVK
Sbjct: 718 TVK 720
Participates in abscisic acid-regulated gene expression during seed development.
Arabidopsis thaliana (taxid: 3702)
>sp|P26307|VIV1_MAIZE Regulatory protein viviparous-1 OS=Zea mays GN=VP1 PE=2 SV=1 Back     alignment and function description
>sp|P37398|VIV_ORYSJ B3 domain-containing protein VP1 OS=Oryza sativa subsp. japonica GN=VP1 PE=1 SV=3 Back     alignment and function description
>sp|Q9LW31|FUS3_ARATH B3 domain-containing transcription factor FUS3 OS=Arabidopsis thaliana GN=FUS3 PE=2 SV=2 Back     alignment and function description
>sp|Q7XKC4|Y4765_ORYSJ Putative B3 domain-containing protein Os04g0676650 OS=Oryza sativa subsp. japonica GN=Os04g0676650 PE=3 SV=2 Back     alignment and function description
>sp|Q7XKC5|IDEFH_ORYSJ B3 domain-containing protein Os04g0676600 OS=Oryza sativa subsp. japonica GN=Os04g0676600 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z1Z3|IDEF1_ORYSJ B3 domain-containing protein IDEF1 OS=Oryza sativa subsp. japonica GN=IDEF1 PE=2 SV=1 Back     alignment and function description
>sp|A4LBC0|LFL1_ORYSJ B3 domain-containing protein LFL1 OS=Oryza sativa subsp. japonica GN=LFL1 PE=2 SV=1 Back     alignment and function description
>sp|Q1PFR7|LEC2_ARATH B3 domain-containing transcription factor LEC2 OS=Arabidopsis thaliana GN=LEC2 PE=2 SV=1 Back     alignment and function description
>sp|Q8W4L5|VAL1_ARATH B3 domain-containing transcription repressor VAL1 OS=Arabidopsis thaliana GN=VAL1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query721
2661460735 ABI3 [Populus trichocarpa] 0.970 0.952 0.620 0.0
2661462734 ABI3 [Populus trichocarpa] 0.969 0.952 0.620 0.0
224069934671 predicted protein [Populus trichocarpa] 0.908 0.976 0.648 0.0
340007749648 ABA insensitive 3 [Populus tremula] 0.871 0.969 0.642 0.0
359480094733 PREDICTED: B3 domain-containing transcri 0.954 0.938 0.589 0.0
356527421761 PREDICTED: B3 domain-containing transcri 0.943 0.893 0.535 0.0
255560239551 Abscisic acid-insensitive protein, putat 0.662 0.867 0.710 0.0
21238947755 abscisic acid insensitive 3-like factor 0.957 0.913 0.527 0.0
51870707751 ABI-3 homolog [Psophocarpus tetragonolob 0.951 0.913 0.521 0.0
1046278750 PvAlf [Phaseolus vulgaris] 0.950 0.913 0.511 1e-179
>gi|2661460|emb|CAA05921.1| ABI3 [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/756 (62%), Positives = 558/756 (73%), Gaps = 56/756 (7%)

Query: 1   MKNLQLHGEDLHARSKIEANNHTGFQAMTEEQVTGAGAEREIYM---QDDLLDVDDASIF 57
           MK L++HGED H   + E N   GF AM EEQ      ++EI++   Q+DLL   D SIF
Sbjct: 1   MKGLEMHGEDRHEGVENEGNPTIGFDAMEEEQDILV-EDKEIWLERGQEDLLHASDVSIF 59

Query: 58  YADFPPLPDFPCMSSSSSSSSTPAAVKAITSSASSSSASSSSSAAS---WAVLRSDAEED 114
           Y DFPPLPDFPCMSSSSSSSSTPA V AITSS+SSS +SS+SS++S   WAVL+S+AEED
Sbjct: 60  YEDFPPLPDFPCMSSSSSSSSTPAPVNAITSSSSSSCSSSASSSSSAAAWAVLKSEAEED 119

Query: 115 VDKKNHQ-------------------DQSGDAATQPALSSTASMDISQATDTSIDGVGVD 155
           V+K NHQ                   D   D +T  ALSST SM++ Q  D +++ +G++
Sbjct: 120 VEK-NHQHRNHCYHHNNNDDFNSQAMDDPVDVSTA-ALSSTCSMEVPQPPDQAME-LGIE 176

Query: 156 CMDVMENFVFMDLLDNNDLFDPSSIFNQDDSQPFEGYQQQQQ--QNQTQHEHRQQERDQE 213
           CMDVME+F ++DLL++ND FDPSSIF+ D+   FE +Q +Q   Q+Q Q ++  ++   E
Sbjct: 177 CMDVMEDFGYIDLLESNDFFDPSSIFHPDEGL-FEEFQMEQNEPQDQLQLQYYDEQAGNE 235

Query: 214 LMMQSNNGDNSNEDGGASDDLAMVFLEWLKSNKETVSAEDLRNVKIKKSTIECAAKRLGG 273
            + +  N   ++  GG SDDLAMVFL+WLKSNKETVSA+DLR VK+KK+TIECAA+RLGG
Sbjct: 236 EITKGKNDQEADHQGGRSDDLAMVFLDWLKSNKETVSADDLRRVKLKKTTIECAARRLGG 295

Query: 274 GKEAMKQLLKLILEWVQTNHLQKRRMREALLPASNNNNNLPYQQHFQDTFQNPNPNPNPN 333
           GKE MKQLLKLIL+WVQTNHLQ+RRMRE+   +SN N   PY Q   D  QN NPNPN N
Sbjct: 296 GKEGMKQLLKLILQWVQTNHLQRRRMRES---SSNVNLLYPYNQ---DPLQNQNPNPNSN 349

Query: 334 HNCNPIPPE-PNPCFAQSSW-IGQPSFIH-DPATMVTGFPTPAVGYMGDSFANGMSNING 390
            NCNPIP +  NPCF QS W +  P ++  DPAT++ GF +P VG+MGD F+NG SNING
Sbjct: 350 LNCNPIPADHSNPCFTQSPWNVAPPPYLAADPATVMPGF-SPMVGFMGDPFSNGSSNING 408

Query: 391 HGYAAPPSEYHMLETTRSWPNSQFGLASNYNSFSDNNLHPAPLHPQAFTGYGNQYPYPYL 450
           H Y  P    HML++ ++WP SQF  AS++NSF+DNNL  A     AFTGYGNQYPY Y+
Sbjct: 409 HPYGTPQDCNHMLQSYQTWPPSQFHSASHFNSFADNNLQSAQPQNPAFTGYGNQYPYQYV 468

Query: 451 PGHGEQRLMRMGSSATKEARKKRMARQRRLSTHPRHQHHHNNQ-QNQLQGQNADQHARFG 509
           P +G+ RL R+GSSATKEARKKRMARQRR  ++ R+Q+HHN Q QNQ  G   D H R  
Sbjct: 469 PANGDNRLTRLGSSATKEARKKRMARQRRFLSYHRNQNHHNIQHQNQGAG---DPHERLS 525

Query: 510 SD-NCNPAAQANSGNWVFWPASAGGPAAVSPL-SPVDRQPMQPQ-NYQRQPASDRRQGWK 566
            D N  P  Q+N G+WV+WP +AGG +A + + +PVDR  MQ Q N  RQ A++RRQGWK
Sbjct: 526 DDPNGAPTGQSNPGSWVYWPTAAGGGSASTTVDAPVDRPAMQAQTNNHRQAAAERRQGWK 585

Query: 567 PEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMR 626
           PEKNLRFLLQKVLKQSDVG+LGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMR
Sbjct: 586 PEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMR 645

Query: 627 YSFRFWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKYLIRGVKVRQP-GPKS 685
           Y  RFWPNNKSRMYLLENTGDFV+ NGLQEGDFIVIYSDVKCGKYLIRGVKVRQP GPK 
Sbjct: 646 Y--RFWPNNKSRMYLLENTGDFVRTNGLQEGDFIVIYSDVKCGKYLIRGVKVRQPAGPKP 703

Query: 686 ETKRTGKSQRNQHANPPSAAMGNGSSSSLQVPQTVK 721
           E KR GKSQRN HAN P+AA  NGS S     QTVK
Sbjct: 704 ENKRAGKSQRNSHANCPAAA-NNGSGSQ---KQTVK 735

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|2661462|emb|CAA05922.1| ABI3 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224069934|ref|XP_002303088.1| predicted protein [Populus trichocarpa] gi|222844814|gb|EEE82361.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|340007749|gb|AEK26581.1| ABA insensitive 3 [Populus tremula] Back     alignment and taxonomy information
>gi|359480094|ref|XP_003632397.1| PREDICTED: B3 domain-containing transcription factor ABI3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356527421|ref|XP_003532309.1| PREDICTED: B3 domain-containing transcription factor ABI3-like [Glycine max] Back     alignment and taxonomy information
>gi|255560239|ref|XP_002521137.1| Abscisic acid-insensitive protein, putative [Ricinus communis] gi|223539706|gb|EEF41288.1| Abscisic acid-insensitive protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|21238947|dbj|BAB96578.1| abscisic acid insensitive 3-like factor [Phaseolus vulgaris] Back     alignment and taxonomy information
>gi|51870707|dbj|BAD42433.1| ABI-3 homolog [Psophocarpus tetragonolobus] Back     alignment and taxonomy information
>gi|1046278|gb|AAA87030.1| PvAlf [Phaseolus vulgaris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query721
TAIR|locus:2093166720 ABI3 "AT3G24650" [Arabidopsis 0.621 0.622 0.535 1.4e-131
UNIPROTKB|P37398727 VP1 "B3 domain-containing prot 0.219 0.217 0.650 2.5e-88
TAIR|locus:2088439313 FUS3 "FUSCA 3" [Arabidopsis th 0.178 0.412 0.522 8.9e-33
TAIR|locus:2032170363 LEC2 "LEAFY COTYLEDON 2" [Arab 0.187 0.371 0.430 1.8e-26
UNIPROTKB|Q7XKC5433 LOC_Os04g58000 "B3 domain-cont 0.153 0.256 0.504 6.1e-26
UNIPROTKB|A4LBC0402 LFL1 "B3 domain-containing pro 0.163 0.293 0.512 8.2e-26
UNIPROTKB|Q6Z1Z3362 IDEF1 "B3 domain-containing pr 0.141 0.281 0.528 2.9e-25
TAIR|locus:2064417 790 HSI2 "high-level expression of 0.196 0.179 0.358 1.5e-13
TAIR|locus:2116592 780 HSL1 "HSI2-like 1" [Arabidopsi 0.191 0.176 0.328 4.8e-12
TAIR|locus:2012438352 RAV2 "related to ABI3/VP1 2" [ 0.171 0.352 0.333 2e-08
TAIR|locus:2093166 ABI3 "AT3G24650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1091 (389.1 bits), Expect = 1.4e-131, Sum P(2) = 1.4e-131
 Identities = 276/515 (53%), Positives = 306/515 (59%)

Query:   234 LAMVFLEWLKSNKETVSAEDLRNVKIKKSTIECAAKRLGGGKEAMKQLLKLILEWVQTNH 293
             LA VFLEWLK+NKETVSAEDLR VKIKK+TIE AA+RLGGGKEAMKQLLKLILEWVQTNH
Sbjct:   246 LAAVFLEWLKNNKETVSAEDLRKVKIKKATIESAARRLGGGKEAMKQLLKLILEWVQTNH 305

Query:   294 LQKRRMREALLPASXXXXXLPYQQHFQ-DTFQXXXXXXXXXXXXXXXXXXXXXCFAQSSW 352
             LQ+RR        +     L YQQ FQ D FQ                     CF+ S+W
Sbjct:   306 LQRRR-------TTTTTTNLSYQQSFQQDPFQNPNPNNNNLIPPSDQT-----CFSPSTW 353

Query:   353 IGQP----SFIHDPATMVTGFPTPAVGYMGD-SFANGMSNINGHGYAAPPSEYHMLETTR 407
             +  P    +F+ DP     G+  PA  Y     F   + +     +  PP    M     
Sbjct:   354 VPPPPQQQAFVSDPGF---GY-MPAPNYPPQPEFLPLLES--PPSWPPPPQSGPM----- 402

Query:   408 SWPNSQFGL--ASNYNSFSDNNLHPAPLHPQAFTGYG-NQYPYPYLP-GH-GEQRLMRMG 462
               P+ QF +   S YN F D         P  F GY  N Y YPY+P G   +QRL+R+ 
Sbjct:   403 --PHQQFPMPPTSQYNQFGD---------PTGFNGYNMNPYQYPYVPAGQMRDQRLLRLC 451

Query:   463 SSATKEARKKRMARQRR-LSTHPRXXXXXXXXXXXXXXXXXXXXARFG-SDNCNPAAQ-A 519
             SSATKEARKKRMARQRR LS H R                         +   NP A  A
Sbjct:   452 SSATKEARKKRMARQRRFLSHHHRHNNNNNNNNNNQQNQTQIGETCAAVAPQLNPVATTA 511

Query:   520 NSGNWVFWXXXXXXX-----XXXXXXXXVDRQPMQPQNYQRQPASDRRQGWKPEKNLRFL 574
               G W++W                    +DR        ++Q   DRRQGWKPEKNLRFL
Sbjct:   512 TGGTWMYWPNVPAVPPQLPPVMETQLPTMDRAGSASAMPRQQVVPDRRQGWKPEKNLRFL 571

Query:   575 LQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYSFRFWPN 634
             LQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGIS+AMEDIGTSRVWNMRY  RFWPN
Sbjct:   572 LQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISLAMEDIGTSRVWNMRY--RFWPN 629

Query:   635 NKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKYLIRGVKVRQP-GPKSE------- 686
             NKSRMYLLENTGDFVK NGLQEGDFIVIYSDVKCGKYLIRGVKVRQP G K E       
Sbjct:   630 NKSRMYLLENTGDFVKTNGLQEGDFIVIYSDVKCGKYLIRGVKVRQPSGQKPEAPPSSAA 689

Query:   687 TKRTGKSQRNQHANPPSAAMGNGSSSSLQVPQTVK 721
             TKR  KSQRN + N PSA +   S +S    QTVK
Sbjct:   690 TKRQNKSQRNINNNSPSANVVVASPTS----QTVK 720
GO:0003677 "DNA binding" evidence=ISS;IDA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS;IDA
GO:0009657 "plastid organization" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0009790 "embryo development" evidence=IEP
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;TAS
GO:0009733 "response to auxin stimulus" evidence=IMP
GO:0005829 "cytosol" evidence=IDA
GO:0031930 "mitochondria-nucleus signaling pathway" evidence=IDA
GO:0009686 "gibberellin biosynthetic process" evidence=RCA
GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA
GO:0016114 "terpenoid biosynthetic process" evidence=RCA
GO:0048825 "cotyledon development" evidence=RCA
GO:0051301 "cell division" evidence=RCA
GO:0009737 "response to abscisic acid stimulus" evidence=IMP
UNIPROTKB|P37398 VP1 "B3 domain-containing protein VP1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2088439 FUS3 "FUSCA 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032170 LEC2 "LEAFY COTYLEDON 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XKC5 LOC_Os04g58000 "B3 domain-containing protein Os04g0676600" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A4LBC0 LFL1 "B3 domain-containing protein LFL1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z1Z3 IDEF1 "B3 domain-containing protein IDEF1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2064417 HSI2 "high-level expression of sugar-inducible gene 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116592 HSL1 "HSI2-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012438 RAV2 "related to ABI3/VP1 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q01593ABI3_ARATHNo assigned EC number0.52690.85430.8555yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query721
cd10015109 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o 5e-35
cd1001798 cd10017, B3_DNA, Plant-specific B3-DNA binding dom 2e-25
pfam0236297 pfam02362, B3, B3 DNA binding domain 1e-20
smart0101996 smart01019, B3, B3 DNA binding domain 3e-15
>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins Back     alignment and domain information 
 Score =  128 bits (322), Expect = 5e-35
 Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 11/112 (9%)

Query: 573 FLLQKVLKQSDV----GNLGRIVLPKKEAETHLPEL----EARDGISIAMEDIGTSRVWN 624
            +L K L  +D     G+   + +PK   E   P +    EA   I + M DI   R W 
Sbjct: 1   VVLIKRLSANDTGATGGHQVGLYIPKGIVEKFPPSINHTREANPSIFLTMHDISDCRDWE 60

Query: 625 MRYSFRFWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKYLIRGV 676
            R    F+ +N++   L      FVK N L  GD  +I  D+   +Y IR  
Sbjct: 61  ARA--IFYNSNRNEKRLTRGGRGFVKQNPLNTGDLTLIAFDL-DKEYNIRIC 109

This family contains the N-terminal DNA binding domain of type IIE restriction endonuclease EcoRII-like proteins, the C-terminal DNA binding domain of type IIS restriction endonuclease BfiI-like proteins and plant-specific B3 proteins. Type II restriction endonucleases are components of restriction modification (RM) systems that protect bacteria and archaea against invading foreign DNA. They usually function as homodimers or homotetramers that cleave DNA at defined sites of 4 to 8 bp in length, and they require Mg2+, not ATP or GTP, for catalysis. EcoRII is specific for the 5'-CCWGG sequence (W stands for A or T). EcoRII consists of 2 domains, the C-terminal catalytic/dimerization domain (EcoRII-C), and the N-terminal effector DNA binding domain (EcoRII-N). BfiI is unique in cleaving DNA at fixed positions downstream of an asymmetric sequence in the absence of Mg2+. BfiI consists of two discrete domains with distinct functions: an N-terminal catalytic domain with non-specific nuclease activity and dimerization function that is more closely related to Nuc, an EDTA-resistant nuclease from the phospholipase D (PLD) superfamily; and a C-terminal domain that specifically recognizes its target sequences, 5'-ACTGGG-3'. B3 proteins are a family of plant-specific transcription factors, involved in a great variety of processes, including seed development and auxin response. Length = 109
>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain Back     alignment and domain information
>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 721
PF02362100 B3: B3 DNA binding domain; InterPro: IPR003340 Two 99.67
PF03754114 DUF313: Domain of unknown function (DUF313) ; Inte 97.93
PF09217156 EcoRII-N: Restriction endonuclease EcoRII, N-termi 97.79
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species Back     alignment and domain information 
Probab=99.67  E-value=4.1e-16  Score=132.99  Aligned_cols=97  Identities=29%  Similarity=0.421  Sum_probs=68.8

Q ss_pred             eeeccccCCCCCCCceeecHhHHhhhCCCCcCCCCeEEEEEEcCCCcEEEEEEeeeeeCCCCCCceeec-ChhHHhhhcC
Q 038867          575 LQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYSFRFWPNNKSRMYLLE-NTGDFVKANG  653 (721)
Q Consensus       575 F~KvLT~SDVgklGRLVIPKk~AEa~LP~Ld~~~Gi~L~veDi~tGkvW~FRys~RYW~NnkSRmYLLT-GWsdFVRsKg  653 (721)
                      |.|+|+++|+.+.++|+||++.+++|  .+....++.|.+.|. .|+.|.+++  .++.  .++.|+|+ ||.+||++++
T Consensus         1 F~K~l~~s~~~~~~~l~iP~~f~~~~--~~~~~~~~~v~l~~~-~g~~W~v~~--~~~~--~~~~~~l~~GW~~Fv~~n~   73 (100)
T PF02362_consen    1 FFKVLKPSDVSSSCRLIIPKEFAKKH--GGNKRKSREVTLKDP-DGRSWPVKL--KYRK--NSGRYYLTGGWKKFVRDNG   73 (100)
T ss_dssp             EEEE--TTCCCCTT-EEE-HHHHTTT--S--SS--CEEEEEET-TTEEEEEEE--EEEC--CTTEEEEETTHHHHHHHCT
T ss_pred             CEEEEEccCcCCCCEEEeCHHHHHHh--CCCcCCCeEEEEEeC-CCCEEEEEE--EEEc--cCCeEEECCCHHHHHHHcC
Confidence            88999999999999999999999998  222235679999997 899999999  6663  33346666 8999999999


Q ss_pred             CCCCCEEEEEEec-CCCeEEEEEEEc
Q 038867          654 LQEGDFIVIYSDV-KCGKYLIRGVKV  678 (721)
Q Consensus       654 LqaGD~IVFyrd~-snGky~IggRR~  678 (721)
                      |++||+|+|+... ...++.|.+.|+
T Consensus        74 L~~GD~~~F~~~~~~~~~~~v~i~~~   99 (100)
T PF02362_consen   74 LKEGDVCVFELIGNSNFTLKVHIFRK   99 (100)
T ss_dssp             --TT-EEEEEE-SSSCE-EEEEEE--
T ss_pred             CCCCCEEEEEEecCCCceEEEEEEEC
Confidence            9999999999875 344668888764

The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function Back     alignment and domain information
>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query721
1wid_A130 Solution Structure Of The B3 Dna-Binding Domain Of 1e-07
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 574 LLQKVLKQSDVGNLGRIVLPKKEAETHLPELEAR---DGISIAMEDIGTSRVWNMRYSFR 630
           L +K +  SDVG L R+V+PK  AE H P   +     G+ +  ED+   +VW  RYS  
Sbjct: 13  LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDV-NGKVWRFRYS-- 69
Query: 631 FWPNNKSRMYLL-ENTGDFVKANGLQEGDFI 660
           +W  N S+ Y+L +    FVK   L+ GD +
Sbjct: 70  YW--NSSQSYVLTKGWSRFVKEKNLRAGDVV 98
  Database: pdbaa

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query721
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 2e-25
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130 Back     alignment and structure
 Score =  101 bits (252), Expect = 2e-25
 Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 9/126 (7%)

Query: 566 KPEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEAR---DGISIAMEDIGTSRV 622
              ++   L +K +  SDVG L R+V+PK  AE H P   +     G+ +  ED+   +V
Sbjct: 5   SSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDV-NGKV 63

Query: 623 WNMRYSFRFWPNNKSRMYLL-ENTGDFVKANGLQEGDFIVIYSDVKCGKYLIRGVKVRQP 681
           W  RYS+     N S+ Y+L +    FVK   L+ GD +         + L  G K R  
Sbjct: 64  WRFRYSYW----NSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSG 119

Query: 682 GPKSET 687
                +
Sbjct: 120 SDLDAS 125
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query721
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 99.94
4i1k_A146 B3 domain-containing transcription factor VRN1; B3 99.56
1yel_A104 AT1G16640; CESG, protein structure initiative, str 99.37
1na6_A 404 Ecorii, restriction endonuclease ecorii; site-spec 90.85
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
Probab=99.94  E-value=6.5e-27  Score=213.14  Aligned_cols=109  Identities=31%  Similarity=0.590  Sum_probs=96.9

Q ss_pred             CCCcccceeeeccccCCCCCCCceeecHhHHhhhCCCCcC---CCCeEEEEEEcCCCcEEEEEEeeeeeCCCCCCceeec
Q 038867          567 PEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEA---RDGISIAMEDIGTSRVWNMRYSFRFWPNNKSRMYLLE  643 (721)
Q Consensus       567 ~~k~~~~LF~KvLT~SDVgklGRLVIPKk~AEa~LP~Ld~---~~Gi~L~veDi~tGkvW~FRys~RYW~NnkSRmYLLT  643 (721)
                      ..+...++|+|+||+|||++++||+|||++||+|||.++.   ..++.|.++|. +|++|+|||  +||  +++++|+|+
T Consensus         6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~-~Gk~W~fr~--~~~--~~~~~~~Lt   80 (130)
T 1wid_A            6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDV-NGKVWRFRY--SYW--NSSQSYVLT   80 (130)
T ss_dssp             --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEET-TTEEEEEEE--EEE--TTTTEEEEE
T ss_pred             CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeC-CCCEEEEEE--EEE--CCCCceEEc
Confidence            3567789999999999999999999999999999999975   47799999998 899999999  889  667889997


Q ss_pred             -ChhHHhhhcCCCCCCEEEEEEecC-CCeEEEEEEEccC
Q 038867          644 -NTGDFVKANGLQEGDFIVIYSDVK-CGKYLIRGVKVRQ  680 (721)
Q Consensus       644 -GWsdFVRsKgLqaGD~IVFyrd~s-nGky~IggRR~rq  680 (721)
                       ||..||++|+|++||+|+|+++.. .++|+|++||+..
T Consensus        81 ~GW~~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~  119 (130)
T 1wid_A           81 KGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSG  119 (130)
T ss_dssp             SSHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCS
T ss_pred             CChHHHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCC
Confidence             799999999999999999999864 3589999988754
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana} Back     alignment and structure
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 721
d1wida_117 b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre 3e-29
d1yela1102 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid 5e-09
d1na6a1175 b.142.1.1 (A:4-178) Restriction endonuclease EcoRI 2e-08
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117 Back     information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  110 bits (275), Expect = 3e-29
 Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 7/114 (6%)

Query: 569 KNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARD---GISIAMEDIGTSRVWNM 625
           ++   L +K +  SDVG L R+V+PK  AE H P   +     G+ +  ED+   +VW  
Sbjct: 1   RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDV-NGKVWRF 59

Query: 626 RYSFRFWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKYLIRGVKVR 679
           RYS+    N+     L +    FVK   L+ GD +         + L  G K R
Sbjct: 60  RYSYW---NSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSR 110
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Back     information, alignment and structure
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query721
d1wida_117 DNA-binding protein RAV1 {Thale cress (Arabidopsis 99.91
d1na6a1175 Restriction endonuclease EcoRII, N-terminal domain 99.62
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 99.25
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=1.4e-24  Score=190.30  Aligned_cols=106  Identities=30%  Similarity=0.590  Sum_probs=92.0

Q ss_pred             cccceeeeccccCCCCCCCceeecHhHHhhhCCCCcCC---CCeEEEEEEcCCCcEEEEEEeeeeeCCCCCCceeec-Ch
Q 038867          570 NLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEAR---DGISIAMEDIGTSRVWNMRYSFRFWPNNKSRMYLLE-NT  645 (721)
Q Consensus       570 ~~~~LF~KvLT~SDVgklGRLVIPKk~AEa~LP~Ld~~---~Gi~L~veDi~tGkvW~FRys~RYW~NnkSRmYLLT-GW  645 (721)
                      .+..+|+|+||+|||++.+||+||+++|++|||.++..   .++.|.+.|. +|++|.|+|  +||.++  +.|+|. ||
T Consensus         2 ~~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~-~g~~W~~~~--~~~~~~--~~~~l~~GW   76 (117)
T d1wida_           2 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDV-NGKVWRFRY--SYWNSS--QSYVLTKGW   76 (117)
T ss_dssp             CCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEET-TTEEEEEEE--EEETTT--TEEEEESSH
T ss_pred             CCceEEEEEecchhcCCCCEEEECHHHHHHhCCccccccCCCcEEEEEEeC-CCCEEEEEE--EEECCC--CceEEecCH
Confidence            45789999999999999999999999999999999763   6789999998 899999999  888544  345554 89


Q ss_pred             hHHhhhcCCCCCCEEEEEEecC-CCeEEEEEEEccC
Q 038867          646 GDFVKANGLQEGDFIVIYSDVK-CGKYLIRGVKVRQ  680 (721)
Q Consensus       646 sdFVRsKgLqaGD~IVFyrd~s-nGky~IggRR~rq  680 (721)
                      .+||++|+|++||+|+||++.. +++|+|++||+..
T Consensus        77 ~~Fv~~~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~  112 (117)
T d1wida_          77 SRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSG  112 (117)
T ss_dssp             HHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCS
T ss_pred             HHHHHHcCCCCCCEEEEEEEeCCCCEEEEEEEECCC
Confidence            9999999999999999999854 5699998887644
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure