Citrus Sinensis ID: 038877

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSDISEIN
Secondary Structure (PSIPRED)
ccccccccccEEEcccccccccccccccccccEEEccccccccccHHHHHccccccEEEcccccccccccHHHHccccccEEEccccccccccHHHHccccccEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccEEEccHHHHHHHcccccccccEEEEEcccccccccccccccccccccEEEcccccccEEEcccccccccccccccccccEEcccccccccccccccccccccEEEEEccccccEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHcccHHcccccccccccEEEEEEccccccccHHHHHHcccEEEEEccccccHHcccHHHHHHHcHEEEccccccHHHccHHHHHHHHHHEEEccccccHcHccccHHccccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHcEEEEccHHHHHHHHccHHHHHHHHHcccccccccccEEEcHHHHHcccEEEEEccccEEEEEEccccccccccccccccEEEEEcccccHcccEHHEEcccccEEEEcccHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
PKVEEWEGAKRISLMktgiqspseiptcprlvtflldgnwieeITDGFFRSMSSLRVLSLRRNLalsklpsgisnlvslhhldlswtriRGLPQELKALEKLRYLSlegtrhlsiiphqlisgFSKLEVLRLLWCGLwsrkeqeegsvlyddAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLkypkllsitqsvgvyfcqspplnvLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKelridscydveeiisvdklsdisein
Flexible Loop (DISEMBL)
pkveewegakrislmktgiqspseiptCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELridscydveeiisvdklsdisein
Low Complexity Region (SEG)
PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFrsmsslrvlslrrnlalsKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSDISEIN
Disordered region (IsUnstruct)
***********************EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDK********
Disordered Region (DISOPRED)
PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDK*S******
Disordered Region (DISEMBL)
********AKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSDISEIN
Disordered Region (DISPRO)
PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVD*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSDISEIN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	298	2.2.26 [Sep-21-2011]
Q8RXS5	888	Probable disease resistan	yes	no	0.922	0.309	0.367	3e-35
Q8L3R3	885	Disease resistance protei	no	no	0.939	0.316	0.373	3e-31
Q9FG91	848	Probable disease resistan	no	no	0.949	0.333	0.321	3e-31
O64973	889	Disease resistance protei	no	no	0.939	0.314	0.357	4e-30
Q9FG90	862	Probable disease resistan	no	no	0.946	0.327	0.335	2e-29
Q9C8K0	854	Probable disease resistan	no	no	0.942	0.329	0.324	3e-29
O82484	892	Putative disease resistan	no	no	0.942	0.315	0.347	1e-28
P60838	894	Probable disease resistan	no	no	0.932	0.310	0.372	4e-28
Q9C8T9	898	Putative disease resistan	no	no	0.902	0.299	0.351	2e-27
Q9LVT4	843	Probable disease resistan	no	no	0.929	0.328	0.309	2e-26

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  149 bits (375), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/294 (36%), Positives = 167/294 (56%), Gaps = 19/294 (6%)

Query: 1   PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSL 60
           P++E+W+ A+R+SLM   I+S  + P  P+L+T LL  N++  I+  FFR M  L VL L
Sbjct: 505 PEIEKWKVARRVSLMFNNIESIRDAPESPQLITLLLRKNFLGHISSSFFRLMPMLVVLDL 564

Query: 61  RRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQL 120
             N  L  LP+ IS  VSL +L LS TRIR  P  L  L KL YL+LE TR +  I    
Sbjct: 565 SMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAGLVELRKLLYLNLEYTRMVESICG-- 622

Query: 121 ISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQ 180
           ISG + L+VLRL   G             + +   ++ EL  L++L  L+ +L  +  ++
Sbjct: 623 ISGLTSLKVLRLFVSG-------------FPEDPCVLNELQLLENLQTLTITLGLASILE 669

Query: 181 KFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKL 240
           +FL   +L S T+++ +         +  +A M++LQEL   +SD+ E+K+   E V  L
Sbjct: 670 QFLSNQRLASCTRALRIENLNPQSSVISFVATMDSLQELHFADSDIWEIKVKRNETVLPL 729

Query: 241 F----RSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDK 290
                 + F +L+ VS+++C + +DLTWL+FA NL  LR+ S  D++E+I+ +K
Sbjct: 730 HIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVLRVISASDLKEVINKEK 783

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score =  135 bits (341), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/300 (37%), Positives = 153/300 (51%), Gaps = 20/300 (6%)

Query: 1   PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNW-IEEITDGFFRSMSSLRVLS 59
           P+VE W   KR+SLM    +     P C  L+T  L  N+ + +I+  FFR M SL VL 
Sbjct: 510 PEVENWRAVKRMSLMNNNFEKILGSPECVELITLFLQNNYKLVDISMEFFRCMPSLAVLD 569

Query: 60  LRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQ 119
           L  N +LS+LP  IS LVSL +LDLS T I  LP  L  L KL +L LE TR L     +
Sbjct: 570 LSENHSLSELPEEISELVSLQYLDLSGTYIERLPHGLHELRKLVHLKLERTRRL-----E 624

Query: 120 LISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAV 179
            ISG S L  LR L           +     D    LMKEL  L+HL +++  + S L  
Sbjct: 625 SISGISYLSSLRTL--------RLRDSKTTLDTG--LMKELQLLEHLELITTDISSGLVG 674

Query: 180 QKFLKYPKLLSITQSVGVYFCQSPP---LNVLHLAYMENLQELVILNSDLEEMKIDSAEE 236
           + F  YP++    Q + +      P   + VL L  + NL  + I N  + E+ I+    
Sbjct: 675 ELFC-YPRVGRCIQHIYIRDHWERPEESVGVLVLPAIHNLCYISIWNCWMWEIMIEKTPW 733

Query: 237 VKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSDISE 296
            K L    F +L+ V ++ C   KDLTWL+FA NL  LR+  C  +E+IIS +K + + E
Sbjct: 734 KKNLTNPNFSNLSNVRIEGCDGLKDLTWLLFAPNLINLRVWGCKHLEDIISKEKAASVLE 793

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g43730 OS=Arabidopsis thaliana GN=At5g43730 PE=2 SV=1

 Score =  135 bits (341), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 168/302 (55%), Gaps = 19/302 (6%)

Query: 1   PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSL 60
           P    WE  +++SL+ T ++  +  P CP L T LL  N + +I+ GFF  M  L VL L
Sbjct: 505 PNDISWEIVRQMSLISTQVEKIACSPNCPNLSTLLLPYNKLVDISVGFFLFMPKLVVLDL 564

Query: 61  RRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQL 120
             N +L +LP  ISNL SL +L+LS T I+ LP  LK L KL YL+LE T  L  +   +
Sbjct: 565 STNWSLIELPEEISNLGSLQYLNLSLTGIKSLPVGLKKLRKLIYLNLEFTNVLESLVG-I 623

Query: 121 ISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQ 180
            +    L+VL+L +              L+   + +M+EL  LKHL +L+ ++  ++ ++
Sbjct: 624 ATTLPNLQVLKLFYS-------------LFCVDDIIMEELQRLKHLKILTATIEDAMILE 670

Query: 181 KFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKL 240
           +     +L S  + + +    +P + +L+   +  LQ+L I++ ++ E++ID   + ++ 
Sbjct: 671 RVQGVDRLASSIRGLCLRNMSAPRV-ILNSVALGGLQQLGIVSCNISEIEIDWLSKERRD 729

Query: 241 FRS----GFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSDISE 296
            RS    GF+ L +++V      +DL+WL+FAQNLK++++     +EEII+  K   I++
Sbjct: 730 HRSTSSPGFKQLASITVIGLVGPRDLSWLLFAQNLKDIQVQYSPTIEEIINKQKGMSITK 789

Query: 297 IN 298
           ++
Sbjct: 790 VH 791

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  132 bits (331), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/299 (35%), Positives = 157/299 (52%), Gaps = 19/299 (6%)

Query: 1   PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSL 60
           PKV++W   ++ISLM   I+   +   C  L T  L  N + +I+  FFR M  L VL L
Sbjct: 511 PKVKDWNTVRKISLMNNEIEEIFDSHECAALTTLFLQKNDVVKISAEFFRCMPHLVVLDL 570

Query: 61  RRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQL 120
             N +L++LP  IS L SL + +LS+T I  LP  L  L+KL +L+LE   H+S +    
Sbjct: 571 SENQSLNELPEEISELASLRYFNLSYTCIHQLPVGLWTLKKLIHLNLE---HMSSLGS-- 625

Query: 121 ISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQ 180
           I G S L  LR L  GL       +  +L D +  L+KEL  L+HL V++  + SSL  +
Sbjct: 626 ILGISNLWNLRTL--GL------RDSRLLLDMS--LVKELQLLEHLEVITLDISSSLVAE 675

Query: 181 KFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKID----SAEE 236
             L   +L+   + V   + +   + VL L  M NL++L I    + E+KI+    S+  
Sbjct: 676 PLLCSQRLVECIKEVDFKYLKEESVRVLTLPTMGNLRKLGIKRCGMREIKIERTTSSSSR 735

Query: 237 VKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSDIS 295
            K      F +L+ V +  C   KDLTWL+FA NL  L +    +VE+IIS +K  + S
Sbjct: 736 NKSPTTPCFSNLSRVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKAEEHS 794

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG90|DRL33_ARATH Probable disease resistance protein At5g43740 OS=Arabidopsis thaliana GN=At5g43740 PE=2 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/310 (33%), Positives = 170/310 (54%), Gaps = 28/310 (9%)

Query: 1   PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFL-LDGNWIEEITDGFFRSMSSLRVLS 59
           P    WE  + +S   T I+  S    CP L T L LD   + +I++ FFR M  L VL 
Sbjct: 504 PNDINWEIVRTMSFTCTQIKKISCRSKCPNLSTLLILDNRLLVKISNRFFRFMPKLVVLD 563

Query: 60  LRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTR-HLSIIPH 118
           L  NL L KLP  ISNL SL +L++S T I+ LP  LK L KL YL+LE T  H S++  
Sbjct: 564 LSANLDLIKLPEEISNLGSLQYLNISLTGIKSLPVGLKKLRKLIYLNLEFTGVHGSLV-- 621

Query: 119 QLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLA 178
            + +    L+VL+  +            S +Y D + LMKEL  L+HL +L+ ++     
Sbjct: 622 GIAATLPNLQVLKFFY------------SCVYVD-DILMKELQDLEHLKILTANVKDVTI 668

Query: 179 VQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKID-SAEEV 237
           +++     +L S  +S+ +    +P + +L    +  LQ+L IL  ++ E++ID  ++E 
Sbjct: 669 LERIQGDDRLASSIRSLCLEDMSTPRV-ILSTIALGGLQQLAILMCNISEIRIDWESKER 727

Query: 238 KKLFRS---------GFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISV 288
           ++L  +         GF+ L+TV ++  +  +DL+WL++AQNLK+L +     +EEII+ 
Sbjct: 728 RELSPTEILPSTGSPGFKQLSTVYINQLEGQRDLSWLLYAQNLKKLEVCWSPQIEEIINK 787

Query: 289 DKLSDISEIN 298
           +K  +I++++
Sbjct: 788 EKGMNITKLH 797

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8K0|DRL5_ARATH Probable disease resistance protein At1g51480 OS=Arabidopsis thaliana GN=At1g51480 PE=2 SV=2

 Score =  129 bits (324), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 163/308 (52%), Gaps = 27/308 (8%)

Query: 1   PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSL 60
           P    WE  +++SL+ T I+  S    C  L T LL  N +  I+ GFF  M  L VL L
Sbjct: 507 PNDINWEIVRQVSLISTQIEKISCSSKCSNLSTLLLPYNKLVNISVGFFLFMPKLVVLDL 566

Query: 61  RRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQL 120
             N++L +LP  ISNL SL +L+LS T I+ LP  +K L KL YL+LE +  L  +   +
Sbjct: 567 STNMSLIELPEEISNLCSLQYLNLSSTGIKSLPGGMKKLRKLIYLNLEFSYKLESLV-GI 625

Query: 121 ISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQ 180
            +    L+VL+L +            +V  DD   LM+EL  + HL +L+ ++  ++ ++
Sbjct: 626 SATLPNLQVLKLFY-----------SNVCVDDI--LMEELQHMDHLKILTVTIDDAMILE 672

Query: 181 KFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKID----SAEE 236
           +     +L S  + + +    +P + VL    +  LQ+L IL+ ++ E+K+D       E
Sbjct: 673 RIQGIDRLASSIRGLCLTNMSAPRV-VLSTTALGGLQQLAILSCNISEIKMDWKSKERRE 731

Query: 237 VKKL--------FRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISV 288
           V  +           GF+ L++V++      +DL+WL+FAQNLK L +    ++EEII+ 
Sbjct: 732 VSPMEIHPSTSTSSPGFKQLSSVNIMKLVGPRDLSWLLFAQNLKSLHVGFSPEIEEIINK 791

Query: 289 DKLSDISE 296
           +K S I++
Sbjct: 792 EKGSSITK 799

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/299 (34%), Positives = 156/299 (52%), Gaps = 18/299 (6%)

Query: 1   PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVT-FLLDGNWIEEITDGFFRSMSSLRVLS 59
           PKVE+W   +R+SLM  GI+  S  P CP L T FL +   +  I+  FFR M  L VL 
Sbjct: 508 PKVEDWGAVRRLSLMNNGIEEISGSPECPELTTLFLQENKSLVHISGEFFRHMRKLVVLD 567

Query: 60  LRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQ 119
           L  N  L  LP  IS LV+L +LDLS T I GLP  L+ L+ L +L+LE  R L      
Sbjct: 568 LSENHQLDGLPEQISELVALRYLDLSHTNIEGLPACLQDLKTLIHLNLECMRRLGS---- 623

Query: 120 LISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAV 179
            I+G SKL  LR L  GL         +++ D     +KEL  L+HL +L+  + S++ +
Sbjct: 624 -IAGISKLSSLRTL--GL------RNSNIMLDVMS--VKELHLLEHLEILTIDIVSTMVL 672

Query: 180 QKFLKYPKLLSITQSVGV--YFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEV 237
           ++ +    L++  Q V +            L L  M++L+ L + N ++ E++I+     
Sbjct: 673 EQMIDAGTLMNCMQEVSIRCLIYDQEQDTKLRLPTMDSLRSLTMWNCEISEIEIERLTWN 732

Query: 238 KKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSDISE 296
                  F +L+ V +  C   KDLTWL+FA N+  L I+    ++E+IS  K + ++E
Sbjct: 733 TNPTSPCFFNLSQVIIHVCSSLKDLTWLLFAPNITYLMIEQLEQLQELISHAKATGVTE 791

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score =  125 bits (313), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 156/306 (50%), Gaps = 28/306 (9%)

Query: 1   PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVT-FLLDGNWIEEITDGFFRSMSSLRVLS 59
           PKV+ W   +R+SLM+  I+  S  P C  L T FL   + +  I+D FFR +  L VL 
Sbjct: 510 PKVKNWSSVRRMSLMENEIEILSGSPECLELTTLFLQKNDSLLHISDEFFRCIPMLVVLD 569

Query: 60  LRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQ 119
           L  N +L KLP+ IS LVSL +LDLSWT I+ LP  L+ L+KLRYL L+  + L  I   
Sbjct: 570 LSGNSSLRKLPNQISKLVSLRYLDLSWTYIKRLPVGLQELKKLRYLRLDYMKRLKSISGI 629

Query: 120 LISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAV 179
                S L  L+LL          +    L       ++ L  L+ LN+   S+ SSL V
Sbjct: 630 SNI--SSLRKLQLL----------QSKMSLDMSLVEELQLLEHLEVLNI---SIKSSLVV 674

Query: 180 QKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKK 239
           +K L  P+L+   Q + +   Q     VL L  M+NL +++I    + E+KI    E K 
Sbjct: 675 EKLLNAPRLVKCLQILVLRGVQEESSGVLTLPDMDNLNKVIIRKCGMCEIKI----ERKT 730

Query: 240 LFRSGFRS--------LNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKL 291
           L  S  RS        L+TV +  C   KDLTWL+FA NL  L +     VE II+ +K 
Sbjct: 731 LSLSSNRSPKTQFLHNLSTVHISSCDGLKDLTWLLFAPNLTSLEVLDSELVEGIINQEKA 790

Query: 292 SDISEI 297
             +S I
Sbjct: 791 MTMSGI 796

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/296 (35%), Positives = 152/296 (51%), Gaps = 27/296 (9%)

Query: 2   KVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLR 61
           KVE W   +R+SLMK  I        C  L T LL    +E+I+  FF SM  L VL L 
Sbjct: 510 KVENWNVVRRMSLMKNNIAHLDGRLDCMELTTLLLQSTHLEKISSEFFNSMPKLAVLDLS 569

Query: 62  RNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLI 121
            N  LS+LP+GIS LVSL +L+LS T IR LP+ L+ L+KL +L LE T  L  +    I
Sbjct: 570 GNYYLSELPNGISELVSLQYLNLSSTGIRHLPKGLQELKKLIHLYLERTSQLGSMVG--I 627

Query: 122 SGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHS-SLAVQ 180
           S    L+VL+L             GS    D + + KEL  L+HL VL+ ++   +L   
Sbjct: 628 SCLHNLKVLKL------------SGSSYAWDLDTV-KELEALEHLEVLTTTIDDCTLGTD 674

Query: 181 KFLKYPKLLSITQSVGVYFCQSPPLNVLHL---AYMENLQELVILNSDLEEMKIDSAEEV 237
           +FL   +L+S  + + +    +   N   +     M+ LQE  I +    E+K+      
Sbjct: 675 QFLSSHRLMSCIRFLKISNNSNRNRNSSRISLPVTMDRLQEFTIEHCHTSEIKMGRI--- 731

Query: 238 KKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSD 293
                  F SL  V++  C++ ++LT+L+FA NLK L + S   +E+II+ +K  D
Sbjct: 732 -----CSFSSLIEVNLSNCRRLRELTFLMFAPNLKRLHVVSSNQLEDIINKEKAHD 782

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT4|DRL37_ARATH Probable disease resistance protein At5g47250 OS=Arabidopsis thaliana GN=At5g47250 PE=2 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/310 (30%), Positives = 157/310 (50%), Gaps = 33/310 (10%)

Query: 1   PKVEEWEGAKRISLMKTGIQSPSEIPTCP---RLVTFLLDGNWIEEITDGFFRSMSSLRV 57
           P V +W    ++SL    I++  + P  P    LVT  L  N + +I   FF  MS+L V
Sbjct: 503 PDVTDWTTVTKMSLFNNEIKNIPDDPEFPDQTNLVTLFLQNNRLVDIVGKFFLVMSTLVV 562

Query: 58  LSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIP 117
           L L  N  +++LP GIS LVSL  L+LS T I+ LP+ L  L KL +L+LE T +L  + 
Sbjct: 563 LDLSWNFQITELPKGISALVSLRLLNLSGTSIKHLPEGLGVLSKLIHLNLESTSNLRSVG 622

Query: 118 HQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSL 177
             LIS   KL+VLR              GS    D   L+K L  LK L +L+ ++++  
Sbjct: 623 --LISELQKLQVLRFY------------GSAAALDC-CLLKILEQLKGLQLLTVTVNNDS 667

Query: 178 AVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEV 237
            +++FL   +L  +TQ  G+Y  +   ++   +  + +L +L ++N D+ E   +   + 
Sbjct: 668 VLEEFLGSTRLAGMTQ--GIYL-EGLKVSFAAIGTLSSLHKLEMVNCDITESGTEWEGKR 724

Query: 238 KKLFRSG------------FRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEI 285
           +  +               F+ L+ V ++ C   KDLTWL++A NL+ L ++S   + E+
Sbjct: 725 RDQYSPSTSSSEITPSNPWFKDLSAVVINSCIHLKDLTWLMYAANLESLSVESSPKMTEL 784

Query: 286 ISVDKLSDIS 295
           I+ +K   + 
Sbjct: 785 INKEKAQGVG 794

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
24461865	892	NBS-LRR type disease resistance protein	0.983	0.328	0.474	5e-55
24461864	899	NBS-LRR type disease resistance protein	0.973	0.322	0.45	1e-52
24461866	890	NBS-LRR type disease resistance protein	0.983	0.329	0.434	2e-50
160693188	271	NBS-LRR type disease resistance protein	0.889	0.977	0.476	2e-48
24461863	889	NBS-LRR type disease resistance protein	0.993	0.332	0.447	3e-48
160693212	271	NBS-LRR type disease resistance protein	0.889	0.977	0.464	5e-48
160693144	271	NBS-LRR type disease resistance protein	0.889	0.977	0.464	2e-47
160693142	271	NBS-LRR type disease resistance protein	0.889	0.977	0.464	3e-47
160693206	271	NBS-LRR type disease resistance protein	0.885	0.974	0.462	6e-47
160693172	271	NBS-LRR type disease resistance protein	0.889	0.977	0.457	1e-45

>gi|24461865|gb|AAN62352.1|AF506028_19 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 142/299 (47%), Positives = 194/299 (64%), Gaps = 6/299 (2%)

Query: 1   PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSL 60
           P V  WE A+R+SLM+  I++ SEIPTCP L+T LL+ N + +I + FF+ M SL+VL+L
Sbjct: 508 PDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLLLNENNLRKIQNYFFQFMPSLKVLNL 567

Query: 61  RRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQL 120
             +  L+KLP GIS LVSL HLDLS + I   P ELKAL  L+ L LE TR+L  IP QL
Sbjct: 568 S-HCELTKLPVGISELVSLQHLDLSESDIEEFPGELKALVNLKCLDLEYTRNLITIPRQL 626

Query: 121 ISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQ 180
           IS  S+L VLR+      +  E  E S+L+   E +++ELLGLKHL V++ +L SS  +Q
Sbjct: 627 ISNLSRLRVLRMFGASHNAFDEASENSILFGGGELIVEELLGLKHLEVITLTLRSSYGLQ 686

Query: 181 KFLKYPKLLSITQSVGV-YFCQSPPLNVLHLAYMENLQELVILNSD-LEEMKIDSAEEVK 238
            FL   KL S TQ++ + +F  S  L V  LA ++ L  L I NS  LEE+K+D AEEV+
Sbjct: 687 SFLNSHKLRSCTQALLLQHFKDSTSLEVSALADLKQLNRLQIANSVILEELKMDYAEEVQ 746

Query: 239 KLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSDISEI 297
           +     FRSLN V +  C + KDLT+LVFA NLK +++  C+ +EEI S  K +++ E+
Sbjct: 747 QF---AFRSLNMVEICNCIQLKDLTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEV 802

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461864|gb|AAN62351.1|AF506028_18 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/300 (45%), Positives = 188/300 (62%), Gaps = 10/300 (3%)

Query: 1   PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVT-FLLDGNWIEEITDGFFRSMSSLRVLS 59
           P V EWE AKR+SLM+T I++ SE+PTC  L+T FL+    +E IT  FF+SM  L+VL+
Sbjct: 516 PNVREWENAKRLSLMETQIRNLSEVPTCLHLLTLFLVFNEELEMITGDFFKSMPCLKVLN 575

Query: 60  LRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQ 119
           L     +S  P G+S LVSL HLDLS T I+ LP+EL ALE L+ L+L+ T +L  IP Q
Sbjct: 576 LSGARRMSSFPLGVSVLVSLQHLDLSGTAIQELPKELNALENLKSLNLDQTHYLITIPRQ 635

Query: 120 LISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAV 179
           LIS FS L VLR+   G WS   +   S L+   + L++ L GLKHL VLS +L++S  +
Sbjct: 636 LISRFSCLVVLRMFGVGDWSPNGKRNDSDLFSGGDLLVEALRGLKHLEVLSLTLNNSQDL 695

Query: 180 QKFLKYPKLLSITQSVGVY-FCQSPPLNVLHLAYMENLQELVILNS-DLEEMKIDSAEEV 237
           Q  L   KL S TQ++ ++ F +S PL+V  LA +E+L  L I    +LEE+K+     V
Sbjct: 696 QCVLNSEKLRSCTQALYLHSFKRSEPLDVSALAGLEHLNRLWIHECEELEELKMARQPFV 755

Query: 238 KKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSDISEI 297
                  F+SL  + +  C + K+LT+L+FA NLK + + SC+ +EEIIS  K +D  E+
Sbjct: 756 -------FQSLEKIQIYGCHRLKNLTFLLFAPNLKSIEVSSCFAMEEIISEVKFADFPEV 808

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461866|gb|AAN62353.1|AF506028_20 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/299 (43%), Positives = 184/299 (61%), Gaps = 6/299 (2%)

Query: 1   PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSL 60
           P V  WE A+R+SLM   I + SE+ TCP L+T  L+ N ++ I + FFR M SL+VL+L
Sbjct: 507 PDVSGWEKARRLSLMHNQITNLSEVATCPHLLTLFLNENELQMIHNDFFRFMPSLKVLNL 566

Query: 61  RRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQL 120
             + +L+ LP GIS LVSL HLDLS + I  LP ELKAL  L+ L+LE T  L+ IP QL
Sbjct: 567 ADS-SLTNLPEGISKLVSLQHLDLSKSSIEELPLELKALVNLKCLNLEYTWSLTTIPRQL 625

Query: 121 ISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQ 180
           IS  S+L VLR+      +     E S+L+   E +++ELLGLK+L V+S++L SS  +Q
Sbjct: 626 ISNLSRLHVLRMFAASHSAFDRASEDSILFGGGELIVEELLGLKYLEVISFTLRSSHGLQ 685

Query: 181 KFLKYPKLLSITQSVGVY-FCQSPPLNVLHLAYMENLQELVILNS-DLEEMKIDSAEEVK 238
            FL   KL S T+++ +  F  S  L V  LA ++ L  L I     LEE+K+D   EV+
Sbjct: 686 SFLSSHKLRSCTRALLLQCFNDSTSLEVSALADLKQLNRLWITECKKLEELKMDYTREVQ 745

Query: 239 KLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSDISEI 297
           +     F SL  V +  C K KDLT+LVFA NL+ + +  C  +EE++S+ K +++ E+
Sbjct: 746 QFV---FHSLKKVEILACSKLKDLTFLVFAPNLESIELMGCPAMEEMVSMGKFAEVPEV 801

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|160693188|gb|ABX46359.1| NBS-LRR type disease resistance protein [Citrus aurantium]

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/271 (47%), Positives = 170/271 (62%), Gaps = 6/271 (2%)

Query: 25  IPTCPRLVTFLLDGN-WIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLD 83
           +PTCP L+T  L+ N  +  I   F +SM SL+VL+L R + L  LP GIS LVSL HLD
Sbjct: 1   VPTCPHLLTLFLNNNELLRRINSDFLQSMPSLKVLNLSRYMGLWVLPLGISKLVSLEHLD 60

Query: 84  LSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ 143
           LS + I  +P+ELKAL  L+ L+LE T  L  IP QLIS FS+L VLR+   G +S  + 
Sbjct: 61  LSTSLISEIPEELKALVNLKCLNLENTGLLXQIPLQLISNFSRLHVLRMFGNGYFSCGDY 120

Query: 144 EEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVY-FCQS 202
              SVL+   E L+KELLGLKHL VLS +L SS A+Q FL   KL S TQ++ +  F  S
Sbjct: 121 PIESVLFGGGELLVKELLGLKHLEVLSLTLGSSRALQSFLNSHKLRSCTQAMLLQDFEGS 180

Query: 203 PPLNVLHLAYMENLQELVILNS-DLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKD 261
             ++V  LA ++ L+ L I +  +L E+KID A EV+   R GF SL +  V++C K KD
Sbjct: 181 TSVDVPGLANLKQLKRLRISDCYELVELKIDYAGEVQ---RYGFHSLQSFEVNFCSKLKD 237

Query: 262 LTWLVFAQNLKELRIDSCYDVEEIISVDKLS 292
           LT LV   NLK + +  C  +EEIISV + +
Sbjct: 238 LTLLVLIPNLKSIAVTDCEAMEEIISVGEFA 268

Source: Citrus aurantium

Species: Citrus aurantium

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461863|gb|AAN62350.1|AF506028_17 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 136/304 (44%), Positives = 188/304 (61%), Gaps = 8/304 (2%)

Query: 1   PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVT-FLLDGNWIEEITDGFFRSMSSLRVLS 59
           P V+EWE  +R+SLM+  I+  SE+PTCP L T FL   N ++ ITDGFF+ M SL+VL 
Sbjct: 499 PAVKEWENVRRLSLMQNDIKILSEVPTCPDLHTLFLASNNNLQRITDGFFKFMPSLKVLK 558

Query: 60  LRR--NLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIP 117
           +    +L + KLP G+S L SL  LD+S T I  LP+ELK L  L+ L+L     LS IP
Sbjct: 559 MSHCGDLKVLKLPLGMSMLGSLELLDISQTSIGELPEELKLLVNLKCLNLRWATWLSKIP 618

Query: 118 HQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSL 177
            QLIS  S+L VLR+   G  S  E  E SVL+   E L++ELLGLK+L VL  +L SS 
Sbjct: 619 RQLISNSSRLHVLRMFATGC-SHSEASEDSVLFGGGEVLIQELLGLKYLEVLELTLRSSH 677

Query: 178 AVQKFLKYPKLLSITQSVGVYFCQSPP--LNVLHLAYMENLQELVILN-SDLEEMKIDSA 234
           A+Q F    KL S  +S+ +   +     ++    A + +L EL I + +++EE+KID  
Sbjct: 678 ALQLFFSSNKLKSCIRSLLLDEVRGTKSIIDATAFADLNHLNELRIDSVAEVEELKIDYT 737

Query: 235 EEVKKLFRSG-FRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSD 293
           E V+K      F SL+ V++  C K KDLT+LVFA NLK L++ +C  +EEIISV K ++
Sbjct: 738 EIVRKRREPFVFGSLHRVTLGQCLKLKDLTFLVFAPNLKSLQLLNCRAMEEIISVGKFAE 797

Query: 294 ISEI 297
           + E+
Sbjct: 798 VPEV 801

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|160693212|gb|ABX46371.1| NBS-LRR type disease resistance protein [Citrus australasica]

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 126/271 (46%), Positives = 169/271 (62%), Gaps = 6/271 (2%)

Query: 25  IPTCPRLVTFLLDGN-WIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLD 83
           +PTCP L+T  ++ N  +  I   F +SM SL+VL+L R + L +LPSGIS LVSL HLD
Sbjct: 1   VPTCPSLLTLFINNNELLRRINTDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLD 60

Query: 84  LSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ 143
           LS T IR +P++LKAL  L+ L+LE    L  IP QLIS FS+L VLR+   G +S    
Sbjct: 61  LSTTLIREIPEDLKALVNLKCLNLENACFLFKIPLQLISNFSRLHVLRMFGTGYFSCGLY 120

Query: 144 EEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVY-FCQS 202
            E SVL+   E L+KELL L+HL VL  +L SS A+Q FL    L S TQ++ +  F  S
Sbjct: 121 PEDSVLFGGGELLVKELLDLEHLEVLRLTLGSSRALQSFLTSHMLQSCTQALLLQDFKGS 180

Query: 203 PPLNVLHLAYMENLQELVILNS-DLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKD 261
             ++V  LA ++ L+ L I +  +L E+KID A EV+   R GF SL +  V++C K KD
Sbjct: 181 TSVDVPGLANLKQLKRLRISDCYELVELKIDYAGEVQ---RYGFHSLQSFEVNFCSKLKD 237

Query: 262 LTWLVFAQNLKELRIDSCYDVEEIISVDKLS 292
           LT LV   NLK + +  C  +EEIISV + +
Sbjct: 238 LTLLVLIPNLKSIAVTDCEAMEEIISVGEFA 268

Source: Citrus australasica

Species: Citrus australasica

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|160693144|gb|ABX46337.1| NBS-LRR type disease resistance protein [Citrus medica]

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/271 (46%), Positives = 167/271 (61%), Gaps = 6/271 (2%)

Query: 25  IPTCPRLVTFLLDGN-WIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLD 83
           +PTCP L+T  L+ N  +  I   F +SM SL+VL+L R + L +LP+GIS LVSL HLD
Sbjct: 1   VPTCPHLLTLFLNXNELLRRINTDFLQSMPSLKVLNLSRYMGLLELPAGISKLVSLEHLD 60

Query: 84  LSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ 143
           LS T IR +P++LKAL  L+ L+LE    L  IP QLIS FS+L VLR+   G +S    
Sbjct: 61  LSTTLIREIPEDLKALVNLKCLNLENACFLFKIPLQLISNFSRLHVLRMFGTGYFSCGLY 120

Query: 144 EEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVY-FCQS 202
            E SVL+   E L+KELL LKHL VL  +L SS A+Q FL    L S TQ++ +  F  S
Sbjct: 121 PEDSVLFGGGELLVKELLDLKHLEVLRLTLGSSRALQSFLTSHMLRSCTQALLLQDFKGS 180

Query: 203 PPLNVLHLAYMENLQELVILNS-DLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKD 261
             ++V  LA ++ L+ L I +  +L E+KID A EV+     GF SL +  V +C + KD
Sbjct: 181 TSVDVPGLASLKQLKRLRISDCYELVELKIDYAGEVQHF---GFHSLQSFEVSFCSELKD 237

Query: 262 LTWLVFAQNLKELRIDSCYDVEEIISVDKLS 292
           LT LV   NLK + +  C  +EEIISV + S
Sbjct: 238 LTLLVLIPNLKSIAVTDCKAMEEIISVGEFS 268

Source: Citrus medica

Species: Citrus medica

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|160693142|gb|ABX46336.1| NBS-LRR type disease resistance protein [Citrus medica]

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 126/271 (46%), Positives = 167/271 (61%), Gaps = 6/271 (2%)

Query: 25  IPTCPRLVTFLLDGN-WIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLD 83
           +PTCP L+T  L+ N  +  I   F +SM SL+VL+L R + L +LPSGIS LVSL HLD
Sbjct: 1   VPTCPHLLTLFLNXNELLRRINTDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLD 60

Query: 84  LSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ 143
           LS T IR +P++LKAL  L+ L+LE    L  IP QLIS FS+L VLR+   G +S    
Sbjct: 61  LSTTLIREIPEDLKALVNLKCLNLENACFLFKIPLQLISNFSRLHVLRMFGTGYFSCGLY 120

Query: 144 EEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVY-FCQS 202
            E SVL+   E L+KELL LKHL VL  +L SS A+Q FL    L S TQ++ +  F  S
Sbjct: 121 PEDSVLFGGGELLVKELLDLKHLEVLRLTLGSSHALQSFLTSHMLRSCTQALLLQDFKGS 180

Query: 203 PPLNVLHLAYMENLQELVILNS-DLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKD 261
             ++V  LA ++ L+ L I +  +L E+KID A EV+     GF SL +  V +C + KD
Sbjct: 181 TSVDVPGLANLKQLKRLRISDCYELVELKIDYAGEVQHF---GFHSLQSFEVSFCSELKD 237

Query: 262 LTWLVFAQNLKELRIDSCYDVEEIISVDKLS 292
           LT LV   NLK + +  C  +EEIISV + +
Sbjct: 238 LTLLVLIPNLKSIAVTDCEAMEEIISVGEFA 268

Source: Citrus medica

Species: Citrus medica

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|160693206|gb|ABX46368.1| NBS-LRR type disease resistance protein [Citrus hanaju]

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 125/270 (46%), Positives = 166/270 (61%), Gaps = 6/270 (2%)

Query: 25  IPTCPRLVT-FLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLD 83
           +PTCP L+T FL +   +  I   F +SM SL+VL+L R + L +LP+GIS LVSL HLD
Sbjct: 1   VPTCPHLLTLFLXNNELLRRINTDFLQSMPSLKVLNLSRYMGLLELPAGISKLVSLEHLD 60

Query: 84  LSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ 143
           LS T IR +P++LKAL  L+ L+LE    L  IP QLIS FS+L VLR+   G +S    
Sbjct: 61  LSTTLIREIPEDLKALVNLKXLNLENACFLFKIPLQLISNFSRLHVLRMFGTGYFSCGLY 120

Query: 144 EEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVY-FCQS 202
            E SVL+   E L+KELL LKHL VL  +L SS A+Q FL    L S TQ++ +  F  S
Sbjct: 121 PEDSVLFGGGELLVKELLDLKHLEVLRLTLGSSRALQSFLTSHMLRSCTQALLLQDFKGS 180

Query: 203 PPLNVLHLAYMENLQELVILNS-DLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKD 261
             ++V  LA ++ L+ L I +  +L E+KID A EV+     GF SL +  V +C + KD
Sbjct: 181 TSVDVPGLANLKQLKRLRISDCYELVELKIDYAGEVQHF---GFHSLQSFEVSFCSELKD 237

Query: 262 LTWLVFAQNLKELRIDSCYDVEEIISVDKL 291
           LT LV   NLK + +  C  +EEIISV + 
Sbjct: 238 LTLLVLIPNLKSIAVTDCEAMEEIISVGEF 267

Source: Citrus hanaju

Species: Citrus hanaju

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|160693172|gb|ABX46351.1| NBS-LRR type disease resistance protein [Citrus amblycarpa]

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/271 (45%), Positives = 167/271 (61%), Gaps = 6/271 (2%)

Query: 25  IPTCPRLVTFLLDGN-WIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLD 83
           +PTCP L+T  L+ N  +  I   F +SM SL+VL+L R + L  LP  IS LVSL HLD
Sbjct: 1   VPTCPHLLTLFLNNNELLRRINSDFLQSMPSLKVLNLSRYMGLWDLPLXISKLVSLEHLD 60

Query: 84  LSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ 143
           LS + I  +P+ELKAL  L+ L+LE    L  IP QL+S FS+L VLR+   G +S  + 
Sbjct: 61  LSTSLISEIPEELKALVNLKCLNLENPGRLLKIPLQLLSNFSRLHVLRMFGNGYFSCGDY 120

Query: 144 EEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVY-FCQS 202
              SVL+   E L+KELLGLKHL VLS +L SS A+Q FL   KL S TQ++ +  F  S
Sbjct: 121 PIESVLFGGGELLVKELLGLKHLEVLSLTLGSSRALQSFLNSHKLRSCTQAMLLQDFEGS 180

Query: 203 PPLNVLHLAYMENLQELVILN-SDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKD 261
             ++V  LA ++ L+ L I +  +L E+KID A EV+   R GF SL +  V++C + KD
Sbjct: 181 TSVDVPGLANLKQLKRLRISDYYELVELKIDYAGEVQ---RYGFHSLQSFEVNFCSQVKD 237

Query: 262 LTWLVFAQNLKELRIDSCYDVEEIISVDKLS 292
           LT LV   NLK + +  C  +EEI SV + +
Sbjct: 238 LTLLVLIPNLKFIEVTDCAAMEEITSVGEFA 268

Source: Citrus amblycarpa

Species: Citrus amblycarpa

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.919	0.308	0.355	1.1e-32
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.946	0.315	0.367	3.9e-32
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.939	0.316	0.34	6.8e-30
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.939	0.313	0.323	6.4e-29
TAIR|locus:2036214	851	AT1G15890 [Arabidopsis thalian	0.949	0.332	0.324	3.3e-28
TAIR|locus:2170892	848	AT5G43730 [Arabidopsis thalian	0.949	0.333	0.304	1.4e-27
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.939	0.314	0.331	1.1e-26
TAIR|locus:2171589	948	AT5G47260 [Arabidopsis thalian	0.912	0.286	0.307	6.7e-25
TAIR|locus:2170902	862	AT5G43740 [Arabidopsis thalian	0.946	0.327	0.306	9.2e-25
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.936	0.288	0.310	3.7e-22

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 105/295 (35%), Positives = 163/295 (55%)

Query:     1 PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFXXXXXXXXXXX 60
             P++E+W+ A+R+SLM   I+S  + P  P+L+T LL  N++  I+  FF           
Sbjct:   505 PEIEKWKVARRVSLMFNNIESIRDAPESPQLITLLLRKNFLGHISSSFFRLMPMLVVLDL 564

Query:    61 XXXXXXXKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQL 120
                     LP+ IS  VSL +L LS TRIR  P  L  L KL YL+LE TR +  I    
Sbjct:   565 SMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAGLVELRKLLYLNLEYTRMVESICG-- 622

Query:   121 ISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQ 180
             ISG + L+VLRL   G       E+  VL         EL  L++L  L+ +L  +  ++
Sbjct:   623 ISGLTSLKVLRLFVSGF-----PEDPCVL--------NELQLLENLQTLTITLGLASILE 669

Query:   181 KFLKYPKLLSITQSVGVYFCQSPPLNVLH-LAYMENLQELVILNSDLEEMKIDSAEEVKK 239
             +FL   +L S T+++ +    +P  +V+  +A M++LQEL   +SD+ E+K+   E V  
Sbjct:   670 QFLSNQRLASCTRALRIENL-NPQSSVISFVATMDSLQELHFADSDIWEIKVKRNETVLP 728

Query:   240 LF----RSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDK 290
             L      + F +L+ VS+++C + +DLTWL+FA NL  LR+ S  D++E+I+ +K
Sbjct:   729 LHIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVLRVISASDLKEVINKEK 783

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.9e-32, P = 3.9e-32
 Identities = 111/302 (36%), Positives = 153/302 (50%)

Query:     1 PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGN-WIEEITDGFFXXXXXXXXXX 59
             PKV+ W   +R+SLM+  I+  S  P C  L T  L  N  +  I+D FF          
Sbjct:   510 PKVKNWSSVRRMSLMENEIEILSGSPECLELTTLFLQKNDSLLHISDEFFRCIPMLVVLD 569

Query:    60 XXXXXXXXKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQ 119
                     KLP+ IS LVSL +LDLSWT I+ LP  L+ L+KLRYL L+  + L  I   
Sbjct:   570 LSGNSSLRKLPNQISKLVSLRYLDLSWTYIKRLPVGLQELKKLRYLRLDYMKRLKSISG- 628

Query:   120 LISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAV 179
              IS  S L  L+LL         Q + S+   D   L++EL  L+HL VL+ S+ SSL V
Sbjct:   629 -ISNISSLRKLQLL---------QSKMSL---DMS-LVEELQLLEHLEVLNISIKSSLVV 674

Query:   180 QKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKK 239
             +K L  P+L+   Q + +   Q     VL L  M+NL +++I    + E+KI+       
Sbjct:   675 EKLLNAPRLVKCLQILVLRGVQEESSGVLTLPDMDNLNKVIIRKCGMCEIKIERKTLSLS 734

Query:   240 LFRSG----FRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSDIS 295
               RS       +L+TV +  C   KDLTWL+FA NL  L +     VE II+ +K   +S
Sbjct:   735 SNRSPKTQFLHNLSTVHISSCDGLKDLTWLLFAPNLTSLEVLDSELVEGIINQEKAMTMS 794

Query:   296 EI 297
              I
Sbjct:   795 GI 796

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 6.8e-30, P = 6.8e-30
 Identities = 102/300 (34%), Positives = 142/300 (47%)

Query:     1 PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNW-IEEITDGFFXXXXXXXXXX 59
             P+VE W   KR+SLM    +     P C  L+T  L  N+ + +I+  FF          
Sbjct:   510 PEVENWRAVKRMSLMNNNFEKILGSPECVELITLFLQNNYKLVDISMEFFRCMPSLAVLD 569

Query:    60 XXXXXXXXKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQ 119
                     +LP  IS LVSL +LDLS T I  LP  L  L KL +L LE TR L     +
Sbjct:   570 LSENHSLSELPEEISELVSLQYLDLSGTYIERLPHGLHELRKLVHLKLERTRRL-----E 624

Query:   120 LISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAV 179
              ISG S L  LR L           +     D    LMKEL  L+HL +++  + S L  
Sbjct:   625 SISGISYLSSLRTL--------RLRDSKTTLDTG--LMKELQLLEHLELITTDISSGLVG 674

Query:   180 QKFLKYPKLLSITQSVGVYFCQSPP---LNVLHLAYMENLQELVILNSDLEEMKIDSAEE 236
             + F  YP++    Q + +      P   + VL L  + NL  + I N  + E+ I+    
Sbjct:   675 ELFC-YPRVGRCIQHIYIRDHWERPEESVGVLVLPAIHNLCYISIWNCWMWEIMIEKTPW 733

Query:   237 VKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSDISE 296
              K L    F +L+ V ++ C   KDLTWL+FA NL  LR+  C  +E+IIS +K + + E
Sbjct:   734 KKNLTNPNFSNLSNVRIEGCDGLKDLTWLLFAPNLINLRVWGCKHLEDIISKEKAASVLE 793

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 6.4e-29, P = 6.4e-29
 Identities = 97/300 (32%), Positives = 150/300 (50%)

Query:     1 PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVT-FLLDGNWIEEITDGFFXXXXXXXXXX 59
             PKVE+W   +R+SLM  GI+  S  P CP L T FL +   +  I+  FF          
Sbjct:   508 PKVEDWGAVRRLSLMNNGIEEISGSPECPELTTLFLQENKSLVHISGEFFRHMRKLVVLD 567

Query:    60 XXXXXXXXKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQ 119
                      LP  IS LV+L +LDLS T I GLP  L+ L+ L +L+LE  R L  I   
Sbjct:   568 LSENHQLDGLPEQISELVALRYLDLSHTNIEGLPACLQDLKTLIHLNLECMRRLGSI--- 624

Query:   120 LISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAV 179
               +G SKL  LR L  GL         +++ D     +KEL  L+HL +L+  + S++ +
Sbjct:   625 --AGISKLSSLRTL--GL------RNSNIMLDVMS--VKELHLLEHLEILTIDIVSTMVL 672

Query:   180 QKFLKYPKLLSITQSVGV---YFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEE 236
             ++ +    L++  Q V +    + Q      L L  M++L+ L + N ++ E++I+    
Sbjct:   673 EQMIDAGTLMNCMQEVSIRCLIYDQEQDTK-LRLPTMDSLRSLTMWNCEISEIEIERLTW 731

Query:   237 VKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSDISE 296
                     F +L+ V +  C   KDLTWL+FA N+  L I+    ++E+IS  K + ++E
Sbjct:   732 NTNPTSPCFFNLSQVIIHVCSSLKDLTWLLFAPNITYLMIEQLEQLQELISHAKATGVTE 791

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 3.3e-28, P = 3.3e-28
 Identities = 98/302 (32%), Positives = 152/302 (50%)

Query:     1 PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFXXXXXXXXXXX 60
             PK   WE  +R+SLM   I + S     P L T LL  N +  I+  FF           
Sbjct:   507 PKDINWESLRRMSLMCNQIANISSSSNSPNLSTLLLQNNKLVHISCDFFRFMPALVVLDL 566

Query:    61 XXXXXXXKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQL 120
                     LP  IS L SL +++LS T I+ LP   K L+KL +L+LE T  L  I   +
Sbjct:   567 SRNSSLSSLPEAISKLGSLQYINLSTTGIKWLPVSFKELKKLIHLNLEFTDELESIVG-I 625

Query:   121 ISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQ 180
              +    L+VL+L     +S +   +GS        LM+ELL L+HL VL+ ++  +L ++
Sbjct:   626 ATSLPNLQVLKL-----FSSRVCIDGS--------LMEELLLLEHLKVLTATIKDALILE 672

Query:   181 KFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKID----SAEE 236
                   +L+S  Q++ +    S P+ +L+   +  LQ L I+ S + E+KID       E
Sbjct:   673 SIQGVDRLVSSIQALCLRN-MSAPVIILNTVALGGLQHLEIVGSKISEIKIDWERKGRGE 731

Query:   237 VKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSDISE 296
             +K     GF+ L+ V +   +  +DLTWL+FAQNL+ L +     +EEII+ +K   I+ 
Sbjct:   732 LKCTSSPGFKHLSVVEIFNLEGPRDLTWLLFAQNLRRLSVTLSLTIEEIINKEKGMSITN 791

Query:   297 IN 298
             ++
Sbjct:   792 VH 793

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170892 AT5G43730 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.4e-27, P = 1.4e-27
 Identities = 92/302 (30%), Positives = 161/302 (53%)

Query:     1 PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFXXXXXXXXXXX 60
             P    WE  +++SL+ T ++  +  P CP L T LL  N + +I+ GFF           
Sbjct:   505 PNDISWEIVRQMSLISTQVEKIACSPNCPNLSTLLLPYNKLVDISVGFFLFMPKLVVLDL 564

Query:    61 XXXXXXXKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQL 120
                    +LP  ISNL SL +L+LS T I+ LP  LK L KL YL+LE T  L  +   +
Sbjct:   565 STNWSLIELPEEISNLGSLQYLNLSLTGIKSLPVGLKKLRKLIYLNLEFTNVLESLVG-I 623

Query:   121 ISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQ 180
              +    L+VL+L +  L+            DD   +M+EL  LKHL +L+ ++  ++ ++
Sbjct:   624 ATTLPNLQVLKLFY-SLFC----------VDDI--IMEELQRLKHLKILTATIEDAMILE 670

Query:   181 KFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKL 240
             +     +L S  + + +    +P + +L+   +  LQ+L I++ ++ E++ID   + ++ 
Sbjct:   671 RVQGVDRLASSIRGLCLRNMSAPRV-ILNSVALGGLQQLGIVSCNISEIEIDWLSKERRD 729

Query:   241 FRS----GFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSDISE 296
              RS    GF+ L +++V      +DL+WL+FAQNLK++++     +EEII+  K   I++
Sbjct:   730 HRSTSSPGFKQLASITVIGLVGPRDLSWLLFAQNLKDIQVQYSPTIEEIINKQKGMSITK 789

Query:   297 IN 298
             ++
Sbjct:   790 VH 791

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 99/299 (33%), Positives = 147/299 (49%)

Query:     1 PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFXXXXXXXXXXX 60
             PKV++W   ++ISLM   I+   +   C  L T  L  N + +I+  FF           
Sbjct:   511 PKVKDWNTVRKISLMNNEIEEIFDSHECAALTTLFLQKNDVVKISAEFFRCMPHLVVLDL 570

Query:    61 XXXXXXXKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQL 120
                    +LP  IS L SL + +LS+T I  LP  L  L+KL +L+LE   H+S +    
Sbjct:   571 SENQSLNELPEEISELASLRYFNLSYTCIHQLPVGLWTLKKLIHLNLE---HMSSLGS-- 625

Query:   121 ISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQ 180
             I G S L  LR L  GL       +  +L D +  L+KEL  L+HL V++  + SSL  +
Sbjct:   626 ILGISNLWNLRTL--GL------RDSRLLLDMS--LVKELQLLEHLEVITLDISSSLVAE 675

Query:   181 KFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKID----SAEE 236
               L   +L+   + V   + +   + VL L  M NL++L I    + E+KI+    S+  
Sbjct:   676 PLLCSQRLVECIKEVDFKYLKEESVRVLTLPTMGNLRKLGIKRCGMREIKIERTTSSSSR 735

Query:   237 VKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSDIS 295
              K      F +L+ V +  C   KDLTWL+FA NL  L +    +VE+IIS +K  + S
Sbjct:   736 NKSPTTPCFSNLSRVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKAEEHS 794

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2171589 AT5G47260 [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 6.7e-25, P = 6.7e-25
 Identities = 89/289 (30%), Positives = 144/289 (49%)

Query:     3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGN-WIEEITDGFFXXXXXXXXXXXX 61
             V +W   +R+S+  T IQ+ S+ P C  L T +   N  ++ I+  FF            
Sbjct:   493 VNDWRMIRRMSVTSTQIQNISDSPQCSELTTLVFRRNRHLKWISGAFFQWMTGLVVLDLS 552

Query:    62 XXXXXXKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLI 121
                   +LP  +S+LV L  L+LSWT I+GLP  LK L+ L +L L+ T +L  +   +I
Sbjct:   553 FNRELAELPEEVSSLVLLRFLNLSWTCIKGLPLGLKELKSLIHLDLDYTSNLQEV--DVI 610

Query:   122 SGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQK 181
             +    L+VLRL              SV  D    LM+++  LK L  LS ++  S  +Q+
Sbjct:   611 ASLLNLQVLRLFH------------SVSMD--LKLMEDIQLLKSLKELSLTVRGSSVLQR 656

Query:   182 FLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLF 241
              L   +L S  + + +         +L L  + +L EL IL  ++ E+ ID    +++  
Sbjct:   657 LLSIQRLASSIRRLHLTETTIVDGGILSLNAIFSLCELDILGCNILEITIDWRCTIQREI 716

Query:   242 RSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDK 290
                F+++ T+++  C+  +DLTWL+ A  L EL +  C  +EE+IS DK
Sbjct:   717 IPQFQNIRTMTIHRCEYLRDLTWLLLAPCLGELSVSECPQMEEVISKDK 765

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2170902 AT5G43740 [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 9.2e-25, P = 9.2e-25
 Identities = 95/310 (30%), Positives = 161/310 (51%)

Query:     1 PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFL-LDGNWIEEITDGFFXXXXXXXXXX 59
             P    WE  + +S   T I+  S    CP L T L LD   + +I++ FF          
Sbjct:   504 PNDINWEIVRTMSFTCTQIKKISCRSKCPNLSTLLILDNRLLVKISNRFFRFMPKLVVLD 563

Query:    60 XXXXXXXXKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTR-HLSIIPH 118
                     KLP  ISNL SL +L++S T I+ LP  LK L KL YL+LE T  H S++  
Sbjct:   564 LSANLDLIKLPEEISNLGSLQYLNISLTGIKSLPVGLKKLRKLIYLNLEFTGVHGSLVG- 622

Query:   119 QLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLA 178
              + +    L+VL+  +            S +Y D + LMKEL  L+HL +L+ ++     
Sbjct:   623 -IAATLPNLQVLKFFY------------SCVYVD-DILMKELQDLEHLKILTANVKDVTI 668

Query:   179 VQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKID-SAEEV 237
             +++     +L S  +S+ +    +P + +L    +  LQ+L IL  ++ E++ID  ++E 
Sbjct:   669 LERIQGDDRLASSIRSLCLEDMSTPRV-ILSTIALGGLQQLAILMCNISEIRIDWESKER 727

Query:   238 KKLFRS---------GFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISV 288
             ++L  +         GF+ L+TV ++  +  +DL+WL++AQNLK+L +     +EEII+ 
Sbjct:   728 RELSPTEILPSTGSPGFKQLSTVYINQLEGQRDLSWLLYAQNLKKLEVCWSPQIEEIINK 787

Query:   289 DKLSDISEIN 298
             +K  +I++++
Sbjct:   788 EKGMNITKLH 797

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
 Identities = 94/303 (31%), Positives = 142/303 (46%)

Query:     1 PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFXXXXXXXXXXX 60
             PKV++W   +R+SLM   I+  +    C  L T  L  N ++ ++  F            
Sbjct:   509 PKVKDWGAVRRMSLMMNEIEEITCESKCSELTTLFLQSNQLKNLSGEFIRYMQKLVVLDL 568

Query:    61 XXXXXXXKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQL 120
                    +LP  IS LVSL +LDLSWTRI  LP  LK L+KL +L+L  T  L  I    
Sbjct:   569 SHNPDFNELPEQISGLVSLQYLDLSWTRIEQLPVGLKELKKLIFLNLCFTERLCSI---- 624

Query:   121 ISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQ 180
              SG S+L  L L W  L       E +V + DA  ++KEL  L++L  L  +  + L + 
Sbjct:   625 -SGISRL--LSLRWLSL------RESNV-HGDAS-VLKELQQLENLQDLRITESAEL-IS 672

Query:   181 KFLKYPKLLSITQSVGVY---FCQS--PPLNVLHLAYMENLQELVILNSDLEEMKIDSAE 235
                +  KL+S+ +  G     F  S    +  L+   +EN      +N    E + +S+ 
Sbjct:   673 LDQRLAKLISVLRIEGFLQKPFDLSFLASMENLYGLLVEN-SYFSEINIKCRESETESSY 731

Query:   236 -EVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSDI 294
               +       F +L  + +  C   KDLTW++FA NL  L I    +V EII+ +K  ++
Sbjct:   732 LHINPKIPC-FTNLTGLIIMKCHSMKDLTWILFAPNLVNLDIRDSREVGEIINKEKAINL 790

Query:   295 SEI 297
             + I
Sbjct:   791 TSI 793

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	298
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 22/60 (36%), Positives = 29/60 (48%)

Query: 30 RLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRI 89
           L +  L  N +  I DG F+ + +L+VL L  N   S  P   S L SL  LDLS   +
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 22/180 (12%)

Query: 51  SMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRG-LPQELKALEKLRYLSLEG 109
           S SSL+VL L  N+ + K+P+ ++NL SL  L L+  ++ G +P+EL  ++ L+++ L G
Sbjct: 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL-G 220

Query: 110 TRHLS-IIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSV-------LYDD--AEPLMKE 159
             +LS  IP++ I G + L  L L++  L        G++       LY +  + P+   
Sbjct: 221 YNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS 279

Query: 160 LLGLKHL-------NVLSWSLHSSLAVQKFLKYPKLLS--ITQSVGVYFCQSPPLNVLHL 210
           +  L+ L       N LS  +   +   + L+   L S   T  + V     P L VL L
Sbjct: 280 IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 5/106 (4%)

Query: 29  PRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWT 87
           P + T  L  N +   I D  F + SSLR L+L  N     +P G  ++ +L  LDLS  
Sbjct: 93  PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--SIPNLETLDLSNN 150

Query: 88  RIRG-LPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            + G +P ++ +   L+ L L G   +  IP+  ++  + LE L L
Sbjct: 151 MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTL 195

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 54  SLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWTRIRGLPQE-LKALEKLRYLSLEGTR 111
           +L+ L L  N  L+ +P G    L +L  LDLS   +  +  E    L  LR L L G  
Sbjct: 1   NLKSLDLSNNR-LTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 10/119 (8%)

Query: 10  KRISLMKTGIQS--PSEIPTCPRLVTFL-LDGNWIEEITDGFFRSMSSLRVLSLRRNLAL 66
           +R+ L         PSE    P LV FL +  N ++   +     M SL++LSL RN   
Sbjct: 407 RRVRLQDNSFSGELPSEFTKLP-LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465

Query: 67  SKLP--SGISNLVSLHHLDLSWTRIRG-LPQELKALEKLRYLSLEGTRHLSIIPHQLIS 122
             LP   G      L +LDLS  +  G +P++L +L +L  L L   +    IP +L S
Sbjct: 466 GGLPDSFGSKR---LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS 521

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	298
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.9
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.9
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.87
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.83
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.8
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.8
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.8
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.77
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.74
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.6
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.59
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.59
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.59
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.59
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.55
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.55
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.52
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.49
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.48
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.39
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.34
KOG4341	483	consensus F-box protein containing LRR [General fu	99.34
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.33
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.23
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.19
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.18
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.09
KOG2982	418	consensus Uncharacterized conserved protein [Funct	99.03
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.01
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.0
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.98
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.97
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.89
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.86
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.84
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.78
KOG4341	483	consensus F-box protein containing LRR [General fu	98.77
PLN03150	623	hypothetical protein; Provisional	98.68
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.63
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.61
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.6
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.6
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.55
PLN03150	623	hypothetical protein; Provisional	98.52
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.28
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.25
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.22
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.22
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.19
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.14
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.12
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.12
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.05
PRK15386	426	type III secretion protein GogB; Provisional	97.98
PRK15386	426	type III secretion protein GogB; Provisional	97.89
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.88
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.86
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.71
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.68
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.58
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.53
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.46
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.44
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.81
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.79
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.73
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.68
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.24
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.47
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	93.29
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	92.28
KOG4308	478	consensus LRR-containing protein [Function unknown	91.82
smart00370	26	LRR Leucine-rich repeats, outliers.	91.74
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.74
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.24
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.0
KOG4308	478	consensus LRR-containing protein [Function unknown	86.08

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.90  E-value=5.9e-23  Score=198.75  Aligned_cols=263  Identities=19%  Similarity=0.208  Sum_probs=127.4

Q ss_pred             cccCCCccEEEeecCCCcC-CCC-C-CCCCcccEEEecCCccc-ccCchHHhcCCCccEEEccCCcCCc-cCCccccCcc
Q 038877            3 VEEWEGAKRISLMKTGIQS-PSE-I-PTCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALS-KLPSGISNLV   77 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~-~~~-~-~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~p~~~~~l~   77 (298)
                      +.++++|+.|++++|.+.+ +|. + ..+++|++|++++|.+. .+|.   +.+++|++|++++| .+. .+|..++.++
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~  164 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNN-MLSGEIPNDIGSFS  164 (968)
T ss_pred             HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCC-cccccCChHHhcCC
Confidence            5567777777777777653 543 2 35666666666666554 2332   23455555555555 332 4454555555


Q ss_pred             CCCeeeccCCccc-ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccc--------ccccc
Q 038877           78 SLHHLDLSWTRIR-GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ--------EEGSV  148 (298)
Q Consensus        78 ~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------~~~~~  148 (298)
                      +|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|+.|++++|.+......        ...++
T Consensus       165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  243 (968)
T PLN00113        165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL  243 (968)
T ss_pred             CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence            5555555555443 44445555555555555555444444443 45555555555555544210000        00000


Q ss_pred             cccC-chhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcc
Q 038877          149 LYDD-AEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLE  227 (298)
Q Consensus       149 ~~~~-~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  227 (298)
                      .... ....+..+..+++|+.|+++.+....  ..+......++|+.|++++|......+..+..+++|+.|++++|...
T Consensus       244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~  321 (968)
T PLN00113        244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG--PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT  321 (968)
T ss_pred             cCceeccccChhHhCCCCCCEEECcCCeeec--cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence            0000 22344445555555555555443321  11111222345555666555443333444555566666666665554


Q ss_pred             eeeecchhhhhccccccCCcccEEeccCCCCCCchh-hhhhcCCCcEEEeecCc
Q 038877          228 EMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT-WLVFAQNLKELRIDSCY  280 (298)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~~~~L~~L~l~~c~  280 (298)
                      ......+        ..+++|+.|++++|.-...++ .+..+++|+.|++.+|.
T Consensus       322 ~~~~~~~--------~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        322 GKIPVAL--------TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             CcCChhH--------hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence            4222222        345666666666663222333 34455666666666553

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.90  E-value=6e-23  Score=198.69  Aligned_cols=259  Identities=22%  Similarity=0.226  Sum_probs=172.1

Q ss_pred             CCccEEEeecCCCcC-CC-CCCCCCcccEEEecCCccc-ccCchHHhcCCCccEEEccCCcCCc-cCCccccCccCCCee
Q 038877            7 EGAKRISLMKTGIQS-PS-EIPTCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALS-KLPSGISNLVSLHHL   82 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L   82 (298)
                      .+++.|+++++.+.+ ++ .+..+++|++|++++|.+. .+|...+..+++|++|++++| .+. .+|.  +.+++|++|
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~--~~l~~L~~L  145 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR--GSIPNLETL  145 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccccCc--cccCCCCEE
Confidence            468899999998877 33 4588999999999999887 788876779999999999999 554 5554  568999999


Q ss_pred             eccCCccc-ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhc
Q 038877           83 DLSWTRIR-GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELL  161 (298)
Q Consensus        83 ~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  161 (298)
                      ++++|.+. .+|..++.+++|++|++++|...+.+|.. ++++++|++|++++|.+.+               ..+..+.
T Consensus       146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~---------------~~p~~l~  209 (968)
T PLN00113        146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVG---------------QIPRELG  209 (968)
T ss_pred             ECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcC---------------cCChHHc
Confidence            99999887 78888999999999999999777778875 8999999999999998843               3455555


Q ss_pred             CCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhh-----
Q 038877          162 GLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEE-----  236 (298)
Q Consensus       162 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-----  236 (298)
                      .+++|+.++++++....  ..+......++|+.|++.+|......+..+..+++|++|++++|.+.......+..     
T Consensus       210 ~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  287 (968)
T PLN00113        210 QMKSLKWIYLGYNNLSG--EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI  287 (968)
T ss_pred             CcCCccEEECcCCccCC--cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcC
Confidence            66666666665554321  11112223344555555555433333334444555555555544433211111100     


Q ss_pred             ---------hhccc--cccCCcccEEeccCCCCCCchh-hhhhcCCCcEEEeecCccccccc
Q 038877          237 ---------VKKLF--RSGFRSLNTVSVDYCQKAKDLT-WLVFAQNLKELRIDSCYDVEEII  286 (298)
Q Consensus       237 ---------~~~~~--~~~~~~L~~L~l~~c~~l~~l~-~l~~~~~L~~L~l~~c~~l~~~~  286 (298)
                               .+.++  -..+++|+.|++++|.-...++ .+..+++|++|++.+|.....++
T Consensus       288 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  349 (968)
T PLN00113        288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP  349 (968)
T ss_pred             EEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence                     00000  0356777777777773322332 35667888888888775443333

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.87  E-value=3.4e-23  Score=177.64  Aligned_cols=266  Identities=20%  Similarity=0.220  Sum_probs=141.8

Q ss_pred             cCCCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCe
Q 038877            5 EWEGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHH   81 (298)
Q Consensus         5 ~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~   81 (298)
                      -++.|+.|+++.|.|.++|  .+..=.++++|++++|.|+.+....|..+.+|.+|.+++| .++.+|. .|..+++|+.
T Consensus       147 ~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~  225 (873)
T KOG4194|consen  147 ALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLES  225 (873)
T ss_pred             hHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhh
Confidence            3455666666666665543  2233455666666666665544444555556666666666 5555554 3444666666


Q ss_pred             eeccCCcccccc-hhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccccc--------ccccccC
Q 038877           82 LDLSWTRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEE--------GSVLYDD  152 (298)
Q Consensus        82 L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------~~~~~~~  152 (298)
                      |+|.+|.+.... -.|..+++|+.+.+..| .+..+..+++..|.++++|++..|++....+-+-        +++.++.
T Consensus       226 LdLnrN~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na  304 (873)
T KOG4194|consen  226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA  304 (873)
T ss_pred             hhccccceeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh
Confidence            666555554321 23444444444444444 2333333444444444444444444421100000        0000000


Q ss_pred             -chhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcce-ee
Q 038877          153 -AEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE-MK  230 (298)
Q Consensus       153 -~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~  230 (298)
                       ...-+...+.+++|+.|+++.|...++++  .......+|++|.++.|........++..+.+|++|++++|.+.. +.
T Consensus       305 I~rih~d~WsftqkL~~LdLs~N~i~~l~~--~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE  382 (873)
T KOG4194|consen  305 IQRIHIDSWSFTQKLKELDLSSNRITRLDE--GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE  382 (873)
T ss_pred             hheeecchhhhcccceeEeccccccccCCh--hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence             22333444555666666666665544332  112233555666666665555555556666777777777777665 21


Q ss_pred             ecchhhhhccccccCCcccEEeccCCCCCCchh--hhhhcCCCcEEEeecCcc
Q 038877          231 IDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT--WLVFAQNLKELRIDSCYD  281 (298)
Q Consensus       231 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~~~~L~~L~l~~c~~  281 (298)
                      -...      +=.++++|+.|++.++ +++.++  ....+++||+|++.+..-
T Consensus       383 Daa~------~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Nai  428 (873)
T KOG4194|consen  383 DAAV------AFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAI  428 (873)
T ss_pred             cchh------hhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcc
Confidence            1111      1156899999999998 888886  457799999999988643

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.85  E-value=7.9e-22  Score=169.33  Aligned_cols=232  Identities=20%  Similarity=0.225  Sum_probs=181.9

Q ss_pred             cccCCCccEEEeecCCCcCCCCCCC-CCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCC
Q 038877            3 VEEWEGAKRISLMKTGIQSPSEIPT-CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLH   80 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~   80 (298)
                      |..+++|+.+++.+|.++.+|.++. ..+|+.|++.+|.|+.+....+..++.|++||++.| .++++|. .|..-.+++
T Consensus        98 f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~  176 (873)
T KOG4194|consen   98 FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIK  176 (873)
T ss_pred             HhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCce
Confidence            4578899999999999999998855 566999999999999887766889999999999999 8988865 466668899


Q ss_pred             eeeccCCcccccc-hhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHh
Q 038877           81 HLDLSWTRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKE  159 (298)
Q Consensus        81 ~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (298)
                      +|+|++|.++.+. ..|..+.+|..|.++.| .++.+|...+.++++|+.|++..|.+.               ......
T Consensus       177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~ir---------------ive~lt  240 (873)
T KOG4194|consen  177 KLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIR---------------IVEGLT  240 (873)
T ss_pred             EEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhcccccee---------------eehhhh
Confidence            9999999999765 34778889999999998 567888777889999999999999882               223456


Q ss_pred             hcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhc
Q 038877          160 LLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKK  239 (298)
Q Consensus       160 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  239 (298)
                      |.++++|+.+.+..|....++.  .....+..++.|++..|........++.+++.|+.|+++.|.+..+.++.-     
T Consensus       241 FqgL~Sl~nlklqrN~I~kL~D--G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W-----  313 (873)
T KOG4194|consen  241 FQGLPSLQNLKLQRNDISKLDD--GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW-----  313 (873)
T ss_pred             hcCchhhhhhhhhhcCcccccC--cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh-----
Confidence            7788888888888887765443  223345677888888887777777788888888888888888777544433     


Q ss_pred             cccccCCcccEEeccCCCCCCch
Q 038877          240 LFRSGFRSLNTVSVDYCQKAKDL  262 (298)
Q Consensus       240 ~~~~~~~~L~~L~l~~c~~l~~l  262 (298)
                         +..++|+.|+++++ .++.+
T Consensus       314 ---sftqkL~~LdLs~N-~i~~l  332 (873)
T KOG4194|consen  314 ---SFTQKLKELDLSSN-RITRL  332 (873)
T ss_pred             ---hhcccceeEecccc-ccccC
Confidence               34566777777766 45544

>PLN03210 Resistant to P

Probab=99.83  E-value=1.5e-19  Score=176.18  Aligned_cols=126  Identities=26%  Similarity=0.374  Sum_probs=101.5

Q ss_pred             CccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCC
Q 038877            8 GAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWT   87 (298)
Q Consensus         8 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~   87 (298)
                      +|+.|.+.++++..+|....+.+|++|++.++.+..++.. +..+++|+.++++++..+..+|. ++.+++|+.|++++|
T Consensus       590 ~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c  667 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDC  667 (1153)
T ss_pred             ccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCC
Confidence            4666666666666677666678899999998888877776 67889999999988756777775 677889999999887


Q ss_pred             -cccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCC
Q 038877           88 -RIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus        88 -~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  137 (298)
                       .+..+|..++.+++|+.|++++|..+..+|.. + ++++|+.|++++|..
T Consensus       668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~  716 (1153)
T PLN03210        668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSR  716 (1153)
T ss_pred             CCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCC
Confidence             56788888999999999999998788888875 3 788899998888754

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.80  E-value=1.2e-18  Score=169.97  Aligned_cols=260  Identities=18%  Similarity=0.212  Sum_probs=157.4

Q ss_pred             cCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCC-cccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877            5 EWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGN-WIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL   82 (298)
Q Consensus         5 ~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L   82 (298)
                      .+.+|+.|++.++.+..++ ....+++|+.|+++++ .+..+|.  +..+++|+.|++++|..+..+|..++.+.+|+.|
T Consensus       609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L  686 (1153)
T PLN03210        609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL  686 (1153)
T ss_pred             CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence            4567888888888877765 3467888888888876 4556654  6678888888888876677778888888888888


Q ss_pred             eccCC-cccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccc-----------------
Q 038877           83 DLSWT-RIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQE-----------------  144 (298)
Q Consensus        83 ~l~~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----------------  144 (298)
                      ++++| .++.+|..+ ++++|+.|++++|..+..+|..    .++|+.|++++|.+...-...                 
T Consensus       687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~  761 (1153)
T PLN03210        687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK  761 (1153)
T ss_pred             eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccccccccccccccccccccccchhh
Confidence            88876 666777654 6777888888877555555431    245566666555532100000                 


Q ss_pred             --------------------ccccccc-CchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCC
Q 038877          145 --------------------EGSVLYD-DAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSP  203 (298)
Q Consensus       145 --------------------~~~~~~~-~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  203 (298)
                                          .+.+... ....++..+..+++|+.|+++.|..  +..++... .+++|+.|++++|...
T Consensus       762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~--L~~LP~~~-~L~sL~~L~Ls~c~~L  838 (1153)
T PLN03210        762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN--LETLPTGI-NLESLESLDLSGCSRL  838 (1153)
T ss_pred             ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC--cCeeCCCC-CccccCEEECCCCCcc
Confidence                                0000000 0112334444555555555554331  11122111 2344555555555321


Q ss_pred             CcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchhh-hhhcCCCcEEEeecCccc
Q 038877          204 PLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTW-LVFAQNLKELRIDSCYDV  282 (298)
Q Consensus       204 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-l~~~~~L~~L~l~~c~~l  282 (298)
                      ...+   ...++|+.|++++|.+..++. .+        ..+++|+.|++.+|..++.++. ...++.|+.+++.+|.++
T Consensus       839 ~~~p---~~~~nL~~L~Ls~n~i~~iP~-si--------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        839 RTFP---DISTNISDLNLSRTGIEEVPW-WI--------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL  906 (1153)
T ss_pred             cccc---ccccccCEeECCCCCCccChH-HH--------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence            1000   012455666666655544322 12        4689999999999999998864 467899999999999998


Q ss_pred             cccc
Q 038877          283 EEII  286 (298)
Q Consensus       283 ~~~~  286 (298)
                      +++.
T Consensus       907 ~~~~  910 (1153)
T PLN03210        907 TEAS  910 (1153)
T ss_pred             cccc
Confidence            8664

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.80  E-value=4.8e-21  Score=166.10  Aligned_cols=261  Identities=18%  Similarity=0.175  Sum_probs=131.0

Q ss_pred             cccCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCe
Q 038877            3 VEEWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHH   81 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~   81 (298)
                      |-++..|..|++++|++.+.| .+..-.++-+|++++|+|..||...+-++..|-.||++.| .+..+|+.+..+.+|++
T Consensus        99 iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~Lqt  177 (1255)
T KOG0444|consen   99 IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQT  177 (1255)
T ss_pred             hcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhh
Confidence            334444444444444444444 2233444444444444444444444444444444455444 44444444444445555


Q ss_pred             eeccCCcccccc-hhhcCCCcccEEeccCCcc-CCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHh
Q 038877           82 LDLSWTRIRGLP-QELKALEKLRYLSLEGTRH-LSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKE  159 (298)
Q Consensus        82 L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (298)
                      |.|++|.+..+. ..+-.+++|++|.++++.. ...+|.. +..+.+|+.++++.|.+                ..+|..
T Consensus       178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~L----------------p~vPec  240 (1255)
T KOG0444|consen  178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNL----------------PIVPEC  240 (1255)
T ss_pred             hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCC----------------CcchHH
Confidence            555544433211 1122233344444443321 1233332 44444444444444444                235666


Q ss_pred             hcCCCCccEEEEEecCccchh--------------------hhccccccccceeEEEEeccCCC-Ccccccccccccccc
Q 038877          160 LLGLKHLNVLSWSLHSSLAVQ--------------------KFLKYPKLLSITQSVGVYFCQSP-PLNVLHLAYMENLQE  218 (298)
Q Consensus       160 l~~l~~L~~l~l~~~~~~~~~--------------------~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~  218 (298)
                      +..+++|+.|++++|....+.                    .++...-..+.|++|+..+|... .-.+..++++..|+.
T Consensus       241 ly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev  320 (1255)
T KOG0444|consen  241 LYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV  320 (1255)
T ss_pred             HhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH
Confidence            666666666666665542211                    11111222344555555555442 223334666666666


Q ss_pred             eecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh-hhhhcCCCcEEEeecCcccccccccCcc
Q 038877          219 LVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT-WLVFAQNLKELRIDSCYDVEEIISVDKL  291 (298)
Q Consensus       219 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~~~~L~~L~l~~c~~l~~~~~~~~~  291 (298)
                      ++...|+..-+ ++.+        +.+++|+.|.++.+ .+-.+| .+..+|-|+.|++...+++---|.-.+|
T Consensus       321 f~aanN~LElV-PEgl--------cRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da  384 (1255)
T KOG0444|consen  321 FHAANNKLELV-PEGL--------CRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDA  384 (1255)
T ss_pred             HHhhccccccC-chhh--------hhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCCCCcchh
Confidence            66666554432 2333        57899999999988 444454 4566899999999998887654443333

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.80  E-value=9e-20  Score=170.35  Aligned_cols=275  Identities=40%  Similarity=0.563  Sum_probs=216.9

Q ss_pred             CCcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCc--ccccCchHHhcCCCccEEEccCCcCCccCCccccCccC
Q 038877            1 PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNW--IEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVS   78 (298)
Q Consensus         1 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~   78 (298)
                      |+...+...|++++.++.+..++.-..++.|++|-+.++.  +..++..+|..++.|++||+++|.....+|..++.+.+
T Consensus       517 ~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~  596 (889)
T KOG4658|consen  517 PQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH  596 (889)
T ss_pred             ccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence            4566778899999999999888888888899999999995  66788878999999999999999888899999999999


Q ss_pred             CCeeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHH
Q 038877           79 LHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMK  158 (298)
Q Consensus        79 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (298)
                      |++|+++++.+..+|..++++.+|.+|++..+.....++. ....+++|++|.+.......             ......
T Consensus       597 LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~~-------------~~~~l~  662 (889)
T KOG4658|consen  597 LRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALSN-------------DKLLLK  662 (889)
T ss_pred             hhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeecccccc-------------chhhHH
Confidence            9999999999999999999999999999998866556644 36779999999998765322             455677


Q ss_pred             hhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhh
Q 038877          159 ELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVK  238 (298)
Q Consensus       159 ~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  238 (298)
                      .+..+++|+.+............+....+.....+.+.+.++ ........+..+.+|+.|.|.+|...+..+.....  
T Consensus       663 el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~-~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~--  739 (889)
T KOG4658|consen  663 ELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC-SKRTLISSLGSLGNLEELSILDCGISEIVIEWEES--  739 (889)
T ss_pred             hhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc-ccceeecccccccCcceEEEEcCCCchhhcccccc--
Confidence            888888999888876554223344444444444455554432 23444556888999999999999987633332210  


Q ss_pred             ccccc-cCCcccEEeccCCCCCCchhhhhhcCCCcEEEeecCcccccccccCcccc
Q 038877          239 KLFRS-GFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSD  293 (298)
Q Consensus       239 ~~~~~-~~~~L~~L~l~~c~~l~~l~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~  293 (298)
                       .... .|+++..+.+.+|...+++.|..+.|+|+.|.+.+|..++++...+.+..
T Consensus       740 -~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~  794 (889)
T KOG4658|consen  740 -LIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALL  794 (889)
T ss_pred             -cchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhh
Confidence             0112 37789999999999999999999999999999999999999987776644

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.77  E-value=7.7e-21  Score=164.84  Aligned_cols=246  Identities=20%  Similarity=0.297  Sum_probs=163.7

Q ss_pred             cccCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCccc--ccCchHHhcCCCccEEEccCCcCCccCCccccCccCC
Q 038877            3 VEEWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIE--EITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSL   79 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L   79 (298)
                      ++++.+|++|++.+|.+..+. .++.++.|+.+.+..|++.  .+|.. +-++..|.+||++.| .+.+.|..+..-+++
T Consensus        51 L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN-qL~EvP~~LE~AKn~  128 (1255)
T KOG0444|consen   51 LSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN-QLREVPTNLEYAKNS  128 (1255)
T ss_pred             HHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchh-hhhhcchhhhhhcCc
Confidence            455667777777777766643 4577777777777777665  67776 557777888888888 777777777777777


Q ss_pred             CeeeccCCcccccchh-hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHH
Q 038877           80 HHLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMK  158 (298)
Q Consensus        80 ~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (298)
                      -+|+|++|.+..+|.. +.+++.|-.|++++| .+..+|.. +..+..|++|.+++|.+               .-.-..
T Consensus       129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL---------------~hfQLr  191 (1255)
T KOG0444|consen  129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPL---------------NHFQLR  191 (1255)
T ss_pred             EEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChh---------------hHHHHh
Confidence            8888888887777743 567777778888777 56677775 77777888888887777               233445


Q ss_pred             hhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhh
Q 038877          159 ELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVK  238 (298)
Q Consensus       159 ~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  238 (298)
                      .+.++++|+.|.+++.. .....++....-..+|+.++++.|. ....+..+.++++|+.|++++|++.++.+..     
T Consensus       192 QLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~-----  264 (1255)
T KOG0444|consen  192 QLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTE-----  264 (1255)
T ss_pred             cCccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCceeeeeccH-----
Confidence            55566666666666432 2344455555555667777777764 2233445677788888888888877744332     


Q ss_pred             ccccccCCcccEEeccCCCCCCchhh-hhhcCCCcEEEeecC
Q 038877          239 KLFRSGFRSLNTVSVDYCQKAKDLTW-LVFAQNLKELRIDSC  279 (298)
Q Consensus       239 ~~~~~~~~~L~~L~l~~c~~l~~l~~-l~~~~~L~~L~l~~c  279 (298)
                          +...+|+.|+++.+ .++.+|. +..+++|+.|.+.+.
T Consensus       265 ----~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~N  301 (1255)
T KOG0444|consen  265 ----GEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNN  301 (1255)
T ss_pred             ----HHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccC
Confidence                23466777777776 5666653 445666655554443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.74  E-value=1.9e-19  Score=148.51  Aligned_cols=109  Identities=35%  Similarity=0.518  Sum_probs=91.9

Q ss_pred             CCcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCC
Q 038877            1 PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH   80 (298)
Q Consensus         1 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~   80 (298)
                      |+++.+.+|..|++..|.+..+|.+.+|..|.++++..|+++.+|.....+++++.+||+.+| +++++|..+..+.+|.
T Consensus       200 ~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~  278 (565)
T KOG0472|consen  200 PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLE  278 (565)
T ss_pred             hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhh
Confidence            467888888888888888888888888888888888888888888776678888888888888 8888888888888888


Q ss_pred             eeeccCCcccccchhhcCCCcccEEeccCCc
Q 038877           81 HLDLSWTRIRGLPQELKALEKLRYLSLEGTR  111 (298)
Q Consensus        81 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~  111 (298)
                      +||+++|.++.+|..++++ .|+.|-+.||.
T Consensus       279 rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  279 RLDLSNNDISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             hhcccCCccccCCcccccc-eeeehhhcCCc
Confidence            8888888888888888888 78888877763

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.72  E-value=7.9e-21  Score=156.54  Aligned_cols=244  Identities=24%  Similarity=0.283  Sum_probs=188.7

Q ss_pred             CcccCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCC
Q 038877            2 KVEEWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH   80 (298)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~   80 (298)
                      ++.++..+.++++++|.+.++| .+..+..++.++.+.|.+..+|+. ++.+..|..++++++ ...++|+.++.+..|.
T Consensus        63 dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~  140 (565)
T KOG0472|consen   63 DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ-IGSLISLVKLDCSSN-ELKELPDSIGRLLDLE  140 (565)
T ss_pred             hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH-Hhhhhhhhhhhcccc-ceeecCchHHHHhhhh
Confidence            3556677777888888777755 457777788888888877777777 777888888888888 7777777788888888


Q ss_pred             eeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh
Q 038877           81 HLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL  160 (298)
Q Consensus        81 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  160 (298)
                      .++..+|.+..+|+.+..+.+|..+++.++ .....|+..+. |+.|+++++..|-+.                .+|..+
T Consensus       141 dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~-m~~L~~ld~~~N~L~----------------tlP~~l  202 (565)
T KOG0472|consen  141 DLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIA-MKRLKHLDCNSNLLE----------------TLPPEL  202 (565)
T ss_pred             hhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHH-HHHHHhcccchhhhh----------------cCChhh
Confidence            888888888888888888888888888887 44566665344 888888888877663                378889


Q ss_pred             cCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhcc
Q 038877          161 LGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKL  240 (298)
Q Consensus       161 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  240 (298)
                      +.+.+|+.+++..+.....++++.    |+.+..|+++.|.........+..++++..|++.+|+..+++.+.+      
T Consensus       203 g~l~~L~~LyL~~Nki~~lPef~g----cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c------  272 (565)
T KOG0472|consen  203 GGLESLELLYLRRNKIRFLPEFPG----CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC------  272 (565)
T ss_pred             cchhhhHHHHhhhcccccCCCCCc----cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHH------
Confidence            999999999998887665555444    4667888888886555555567788999999999999988665554      


Q ss_pred             ccccCCcccEEeccCCCCCCchhh-hhhcCCCcEEEeecCc
Q 038877          241 FRSGFRSLNTVSVDYCQKAKDLTW-LVFAQNLKELRIDSCY  280 (298)
Q Consensus       241 ~~~~~~~L~~L~l~~c~~l~~l~~-l~~~~~L~~L~l~~c~  280 (298)
                         -+.+|+.||++++ .++.+|. ++.+ .|+.|.+.|.+
T Consensus       273 ---lLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  273 ---LLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             ---HhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence               5788999999998 7888864 6777 88888888875

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=1.1e-18  Score=128.41  Aligned_cols=154  Identities=27%  Similarity=0.383  Sum_probs=120.0

Q ss_pred             ccCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877            4 EEWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL   82 (298)
Q Consensus         4 ~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L   82 (298)
                      -.++++.+|.+++|.++.+| .+..+.+|+.|++.+|+++++|.+ ++.+++|+.|+++-| .+..+|.+|+.++.|+.|
T Consensus        30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs~p~levl  107 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGSFPALEVL  107 (264)
T ss_pred             cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCCCchhhhh
Confidence            34566777788888877754 557788888888888888888877 788888888888888 777788888888888888


Q ss_pred             eccCCccc--ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh
Q 038877           83 DLSWTRIR--GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL  160 (298)
Q Consensus        83 ~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  160 (298)
                      ++.+|.+.  .+|..+..++.|+.|.++++ ....+|.+ ++++++|+.|.+.+|.+.+                +++.+
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll~----------------lpkei  169 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLLS----------------LPKEI  169 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchhh----------------CcHHH
Confidence            88887766  67777777888888888887 56777776 8888888888888877643                77778


Q ss_pred             cCCCCccEEEEEecCcc
Q 038877          161 LGLKHLNVLSWSLHSSL  177 (298)
Q Consensus       161 ~~l~~L~~l~l~~~~~~  177 (298)
                      +.++.|+.+.+.++...
T Consensus       170 g~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  170 GDLTRLRELHIQGNRLT  186 (264)
T ss_pred             HHHHHHHHHhcccceee
Confidence            88888888888777543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.60  E-value=9.8e-17  Score=144.79  Aligned_cols=252  Identities=17%  Similarity=0.174  Sum_probs=129.3

Q ss_pred             CccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCC
Q 038877            8 GAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWT   87 (298)
Q Consensus         8 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~   87 (298)
                      +++.|...+|.+...-......+|++++++.+.+..+| .++..+.+|+.++...| .+..+|..+....+|+.|.+.+|
T Consensus       220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~n  297 (1081)
T KOG0618|consen  220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYN  297 (1081)
T ss_pred             chheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhh
Confidence            34444444444443222234456677777777666666 55677777777777777 66666666666666777777777


Q ss_pred             cccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCc-ccEEEeeccCCccccccccccccccCchhHH-HhhcCCCC
Q 038877           88 RIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSK-LEVLRLLWCGLWSRKEQEEGSVLYDDAEPLM-KELLGLKH  165 (298)
Q Consensus        88 ~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~  165 (298)
                      .+..+|......+.|++|++..+ .+..+|..++.-+.. |+.++.+.+.+..                .+ ..=.....
T Consensus       298 el~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~----------------lp~~~e~~~~~  360 (1081)
T KOG0618|consen  298 ELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLST----------------LPSYEENNHAA  360 (1081)
T ss_pred             hhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccc----------------cccccchhhHH
Confidence            66666666666677777777666 345555433333332 4444444333311                00 00001123


Q ss_pred             ccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhh--------
Q 038877          166 LNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEV--------  237 (298)
Q Consensus       166 L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~--------  237 (298)
                      |+.|.+.+|...+ ..++. ....++|+.|++++|.........+.+++.|+.|+++||+...++......+        
T Consensus       361 Lq~LylanN~Ltd-~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah  438 (1081)
T KOG0618|consen  361 LQELYLANNHLTD-SCFPV-LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAH  438 (1081)
T ss_pred             HHHHHHhcCcccc-cchhh-hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhc
Confidence            3334444333221 11111 1222445555555554444444445555555555555555444321111000        


Q ss_pred             -----hccccccCCcccEEeccCCCCCCchhhhhhc--CCCcEEEeecCcc
Q 038877          238 -----KKLFRSGFRSLNTVSVDYCQKAKDLTWLVFA--QNLKELRIDSCYD  281 (298)
Q Consensus       238 -----~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~~--~~L~~L~l~~c~~  281 (298)
                           .++.....++|+.+|++.+ +++.+......  |+|++|+++|...
T Consensus       439 sN~l~~fPe~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  439 SNQLLSFPELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             CCceeechhhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence                 0111135788888888877 67765432222  6888888888764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.59  E-value=4.4e-15  Score=137.17  Aligned_cols=239  Identities=16%  Similarity=0.181  Sum_probs=128.2

Q ss_pred             CccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCC
Q 038877            8 GAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWT   87 (298)
Q Consensus         8 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~   87 (298)
                      +...|++.++.++.+|... .++++.|++++|.+..+|...   ..+|++|++++| .++.+|..+.  .+|+.|++++|
T Consensus       179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l---~~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N  251 (754)
T PRK15370        179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENL---QGNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN  251 (754)
T ss_pred             CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhh---ccCCCEEECCCC-ccccCChhhh--ccccEEECcCC
Confidence            4556677766666665421 246777777777666666542   246777777777 6666665432  35677777777


Q ss_pred             cccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccc-----ccccccccCchhHHHhhcC
Q 038877           88 RIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ-----EEGSVLYDDAEPLMKELLG  162 (298)
Q Consensus        88 ~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~  162 (298)
                      .+..+|..+.  .+|+.|++++| .+..+|.. +.  ++|+.|++++|.+..--..     ....+..+....++..+  
T Consensus       252 ~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l--  323 (754)
T PRK15370        252 RITELPERLP--SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL--  323 (754)
T ss_pred             ccCcCChhHh--CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc--
Confidence            6666665443  35677777665 33455543 22  3566677766665320000     00000000000111111  


Q ss_pred             CCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhcccc
Q 038877          163 LKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFR  242 (298)
Q Consensus       163 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  242 (298)
                      .++|+.|++++|....++.     ..++.|+.|++++|...... ..+  .+.|+.|++++|.+..++..          
T Consensus       324 ~~sL~~L~Ls~N~Lt~LP~-----~l~~sL~~L~Ls~N~L~~LP-~~l--p~~L~~LdLs~N~Lt~LP~~----------  385 (754)
T PRK15370        324 PPGLKTLEAGENALTSLPA-----SLPPELQVLDVSKNQITVLP-ETL--PPTITTLDVSRNALTNLPEN----------  385 (754)
T ss_pred             cccceeccccCCccccCCh-----hhcCcccEEECCCCCCCcCC-hhh--cCCcCEEECCCCcCCCCCHh----------
Confidence            2456666666665443321     12356677777776543221 112  25677777777766553221          


Q ss_pred             ccCCcccEEeccCCCCCCchhh-----hhhcCCCcEEEeecCcc
Q 038877          243 SGFRSLNTVSVDYCQKAKDLTW-----LVFAQNLKELRIDSCYD  281 (298)
Q Consensus       243 ~~~~~L~~L~l~~c~~l~~l~~-----l~~~~~L~~L~l~~c~~  281 (298)
                       -...|+.|++++| .++.+|.     ...+|.+..|++.+.+.
T Consensus       386 -l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        386 -LPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             -HHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence             1235777777777 5666541     23357778888877653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.59  E-value=5.8e-17  Score=146.24  Aligned_cols=273  Identities=22%  Similarity=0.266  Sum_probs=167.2

Q ss_pred             ccCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877            4 EEWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL   82 (298)
Q Consensus         4 ~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L   82 (298)
                      .++-+|+.|++++|.+..+| .+..+.+|+.|.++.|.+..+|.. ..++.+|+++++.+| ....+|..+..+.+|++|
T Consensus        42 ~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~L  119 (1081)
T KOG0618|consen   42 EKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYL  119 (1081)
T ss_pred             hheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccc-hhhcCchhHHhhhccccc
Confidence            34455777777777777666 335566666666666666555544 556666666666666 555556556556666666


Q ss_pred             eccCCcccccchhh------------------------------------------------------------------
Q 038877           83 DLSWTRIRGLPQEL------------------------------------------------------------------   96 (298)
Q Consensus        83 ~l~~~~~~~l~~~~------------------------------------------------------------------   96 (298)
                      ++++|.+..+|..+                                                                  
T Consensus       120 dlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~  199 (1081)
T KOG0618|consen  120 DLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLA  199 (1081)
T ss_pred             ccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhcc
Confidence            65555443221100                                                                  


Q ss_pred             --------------------------------------cCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCc
Q 038877           97 --------------------------------------KALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLW  138 (298)
Q Consensus        97 --------------------------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  138 (298)
                                                            ..-.+|++++++++ ....+| .+++.+.+|+.++...|.++
T Consensus       200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n-~l~~lp-~wi~~~~nle~l~~n~N~l~  277 (1081)
T KOG0618|consen  200 NLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHN-NLSNLP-EWIGACANLEALNANHNRLV  277 (1081)
T ss_pred             chhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchh-hhhcch-HHHHhcccceEecccchhHH
Confidence                                                  00113334444443 234556 45888999999999888874


Q ss_pred             ccccc----cc---ccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccc-----------------------ccc
Q 038877          139 SRKEQ----EE---GSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKY-----------------------PKL  188 (298)
Q Consensus       139 ~~~~~----~~---~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~-----------------------~~~  188 (298)
                      ..-..    +.   .....+....++..+..+++|++|++..+....++.....                       ...
T Consensus       278 ~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~  357 (1081)
T KOG0618|consen  278 ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN  357 (1081)
T ss_pred             hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence            31111    11   1112233445566677788999999988765443221100                       112


Q ss_pred             ccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh-----
Q 038877          189 LSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT-----  263 (298)
Q Consensus       189 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-----  263 (298)
                      .+.|+.|++.+|...+...+.+.++.+|+.|+++.|.+.+++...+        ..++.|+.|+++++ .++.++     
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~--------~kle~LeeL~LSGN-kL~~Lp~tva~  428 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL--------RKLEELEELNLSGN-KLTTLPDTVAN  428 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHH--------hchHHhHHHhcccc-hhhhhhHHHHh
Confidence            3457788888888888888889999999999999999887665555        45677777777776 555543     


Q ss_pred             ------------------hhhhcCCCcEEEeecCcccccccccCc
Q 038877          264 ------------------WLVFAQNLKELRIDSCYDVEEIISVDK  290 (298)
Q Consensus       264 ------------------~l~~~~~L~~L~l~~c~~l~~~~~~~~  290 (298)
                                        .+..+|.|+.+|++ |..++++.-.++
T Consensus       429 ~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~  472 (1081)
T KOG0618|consen  429 LGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEA  472 (1081)
T ss_pred             hhhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhhhhhhh
Confidence                              33346788888887 456666654433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.59  E-value=1.8e-16  Score=130.67  Aligned_cols=108  Identities=31%  Similarity=0.455  Sum_probs=82.4

Q ss_pred             CCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccC-Ccccccch-hhcCCCcccE
Q 038877           28 CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSW-TRIRGLPQ-ELKALEKLRY  104 (298)
Q Consensus        28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~-~~~~~l~~-~~~~l~~L~~  104 (298)
                      .+.-++++|..|.|..+|+.+|+.+++|+.||++.| .++++ |.+|.++.+|..|.+.+ |+++.+|+ .|+.+..|+.
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR  144 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence            345677888888888888888888888888888888 88876 66888888887777766 78888874 4777888888


Q ss_pred             EeccCCccCCCCchhhhcCCCcccEEEeeccCC
Q 038877          105 LSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus       105 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  137 (298)
                      |.+.-+ .+.-+..+.+..++++..|.+.+|.+
T Consensus       145 LllNan-~i~Cir~~al~dL~~l~lLslyDn~~  176 (498)
T KOG4237|consen  145 LLLNAN-HINCIRQDALRDLPSLSLLSLYDNKI  176 (498)
T ss_pred             HhcChh-hhcchhHHHHHHhhhcchhcccchhh
Confidence            877776 34455555677888888888777765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=2.7e-17  Score=121.02  Aligned_cols=134  Identities=26%  Similarity=0.401  Sum_probs=123.2

Q ss_pred             CCcccCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCc--cCCccccCcc
Q 038877            1 PKVEEWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALS--KLPSGISNLV   77 (298)
Q Consensus         1 ~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~p~~~~~l~   77 (298)
                      |+|+.+.+|+.|++.+|++.++| .++.++.|+.|++.-|.+..+|.. |+.++.|++||+.+| .+.  .+|..|..+.
T Consensus        50 pnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltyn-nl~e~~lpgnff~m~  127 (264)
T KOG0617|consen   50 PNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYN-NLNENSLPGNFFYMT  127 (264)
T ss_pred             CcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhcccc-ccccccCCcchhHHH
Confidence            68999999999999999999987 669999999999999998888888 999999999999999 666  5788888899


Q ss_pred             CCCeeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCc
Q 038877           78 SLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLW  138 (298)
Q Consensus        78 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  138 (298)
                      .|+.|+++.|.++-+|..++++++|+.|.+.++ .+-++|.+ ++.++.|+.|++.+|+++
T Consensus       128 tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  128 TLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             HHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhcccceee
Confidence            999999999999999999999999999999998 55678887 999999999999999884

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.59  E-value=1.3e-14  Score=133.63  Aligned_cols=218  Identities=21%  Similarity=0.123  Sum_probs=121.8

Q ss_pred             CCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccC
Q 038877            7 EGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSW   86 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~   86 (298)
                      .+|+.|++.+|.++.+|..  +++|++|++++|.+..+|..    .++|+.|+++.| .+..+|..+   .+|+.|++++
T Consensus       222 ~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N-~L~~Lp~lp---~~L~~L~Ls~  291 (788)
T PRK15387        222 AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN-PLTHLPALP---SGLCKLWIFG  291 (788)
T ss_pred             cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCC-chhhhhhch---hhcCEEECcC
Confidence            3678888888888887754  57888888888888777642    356777777777 566555422   3455666666


Q ss_pred             CcccccchhhcCCCcccEEeccCCccCCCCchhhhcC-----------------CCcccEEEeeccCCcccccccccccc
Q 038877           87 TRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISG-----------------FSKLEVLRLLWCGLWSRKEQEEGSVL  149 (298)
Q Consensus        87 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-----------------l~~L~~L~l~~~~~~~~~~~~~~~~~  149 (298)
                      |.++.+|..   .++|+.|++++| .+..+|.. ...                 ..+|+.|++++|.+..          
T Consensus       292 N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l-p~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~----------  356 (788)
T PRK15387        292 NQLTSLPVL---PPGLQELSVSDN-QLASLPAL-PSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS----------  356 (788)
T ss_pred             Ccccccccc---ccccceeECCCC-ccccCCCC-cccccccccccCccccccccccccceEecCCCccCC----------
Confidence            666655542   345666666665 23333321 110                 1245555555555522          


Q ss_pred             ccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCccee
Q 038877          150 YDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEM  229 (298)
Q Consensus       150 ~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  229 (298)
                            ++..   ..+|+.|+++.|....++.      ....|+.|++++|.......    ..+.|+.|++++|.+..+
T Consensus       357 ------LP~l---p~~L~~L~Ls~N~L~~LP~------l~~~L~~LdLs~N~Lt~LP~----l~s~L~~LdLS~N~LssI  417 (788)
T PRK15387        357 ------LPTL---PSELYKLWAYNNRLTSLPA------LPSGLKELIVSGNRLTSLPV----LPSELKELMVSGNRLTSL  417 (788)
T ss_pred             ------CCCC---CcccceehhhccccccCcc------cccccceEEecCCcccCCCC----cccCCCEEEccCCcCCCC
Confidence                  1111   1234444454443332221      12346666666664332111    124566777777665543


Q ss_pred             eecchhhhhccccccCCcccEEeccCCCCCCchhh-hhhcCCCcEEEeecCcc
Q 038877          230 KIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTW-LVFAQNLKELRIDSCYD  281 (298)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-l~~~~~L~~L~l~~c~~  281 (298)
                      +            ..+..|+.|++++| .++.+|. +..++.|+.|++.+++.
T Consensus       418 P------------~l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        418 P------------MLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             C------------cchhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCC
Confidence            2            12345667777776 5666653 45677788888877653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.59  E-value=1e-15  Score=130.23  Aligned_cols=251  Identities=22%  Similarity=0.189  Sum_probs=121.7

Q ss_pred             EEeecCCCcC--CCC-CCCCCcccEEEecCCccc-----ccCchHHhcCCCccEEEccCCcCCcc-------CCccccCc
Q 038877           12 ISLMKTGIQS--PSE-IPTCPRLVTFLLDGNWIE-----EITDGFFRSMSSLRVLSLRRNLALSK-------LPSGISNL   76 (298)
Q Consensus        12 L~l~~~~~~~--~~~-~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~-------~p~~~~~l   76 (298)
                      |+|.++.+++  ... +..+.+|+++++.++.++     .++.. +...++++.++++++ .+..       ++..+..+
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEecccc-ccCCcchHHHHHHHHHHhc
Confidence            4455555442  221 134445666666666653     12222 445556666666665 3331       12344556


Q ss_pred             cCCCeeeccCCccc-ccchhhcCC---CcccEEeccCCccCCC----CchhhhcCC-CcccEEEeeccCCcccccccccc
Q 038877           77 VSLHHLDLSWTRIR-GLPQELKAL---EKLRYLSLEGTRHLSI----IPHQLISGF-SKLEVLRLLWCGLWSRKEQEEGS  147 (298)
Q Consensus        77 ~~L~~L~l~~~~~~-~l~~~~~~l---~~L~~L~l~~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~  147 (298)
                      ++|+.|++++|.+. ..+..+..+   ++|++|++++|+....    +.. .+..+ ++|+.|++++|.+..        
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~--------  151 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK-GLKDLPPALEKLVLGRNRLEG--------  151 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH-HHHhCCCCceEEEcCCCcCCc--------
Confidence            66666666666554 233333223   3366666666633211    111 13444 666677776666632        


Q ss_pred             ccccCchhHHHhhcCCCCccEEEEEecCccc--hhhhccccccccceeEEEEeccCCCCccc----ccccccccccceec
Q 038877          148 VLYDDAEPLMKELLGLKHLNVLSWSLHSSLA--VQKFLKYPKLLSITQSVGVYFCQSPPLNV----LHLAYMENLQELVI  221 (298)
Q Consensus       148 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l  221 (298)
                         .....+...+..+++|+.++++++....  ...+.......+.|+.|++++|...+...    ..+..+++|+.|++
T Consensus       152 ---~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~l  228 (319)
T cd00116         152 ---ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL  228 (319)
T ss_pred             ---hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEec
Confidence               0012334455556666666666655432  11111111122466666666665432221    12445566777777


Q ss_pred             ccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh------hhhhcCCCcEEEeecCc
Q 038877          222 LNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT------WLVFAQNLKELRIDSCY  280 (298)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~------~l~~~~~L~~L~l~~c~  280 (298)
                      ++|.+....+..+..  .++ ...+.|++|++++| .+++..      .+..+++|+++++.++.
T Consensus       229 s~n~l~~~~~~~l~~--~~~-~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         229 GDNNLTDAGAAALAS--ALL-SPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             CCCcCchHHHHHHHH--HHh-ccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence            776655422222210  001 12356777777776 454211      12334667777776653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.55  E-value=2.4e-14  Score=132.31  Aligned_cols=161  Identities=20%  Similarity=0.209  Sum_probs=109.9

Q ss_pred             CcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEEecc
Q 038877           29 PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLE  108 (298)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~  108 (298)
                      .+...|+++++.+..+|.. +  .+.|+.|++++| .+..+|..+.  .+|++|++++|.++.+|..+.  .+|+.|+++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~-I--p~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        178 NNKTELRLKILGLTTIPAC-I--PEQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELS  249 (754)
T ss_pred             cCceEEEeCCCCcCcCCcc-c--ccCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence            4578899999988888865 3  357999999999 8988987654  589999999999999987653  479999999


Q ss_pred             CCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhcccccc
Q 038877          109 GTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKL  188 (298)
Q Consensus       109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~  188 (298)
                      +|. +..+|.. +.  .+|+.|++++|.+..                ++..+.  ++|+.|++++|....++.     ..
T Consensus       250 ~N~-L~~LP~~-l~--s~L~~L~Ls~N~L~~----------------LP~~l~--~sL~~L~Ls~N~Lt~LP~-----~l  302 (754)
T PRK15370        250 INR-ITELPER-LP--SALQSLDLFHNKISC----------------LPENLP--EELRYLSVYDNSIRTLPA-----HL  302 (754)
T ss_pred             CCc-cCcCChh-Hh--CCCCEEECcCCccCc----------------cccccC--CCCcEEECCCCccccCcc-----cc
Confidence            994 5678875 33  579999999998843                333332  478888888876554321     11


Q ss_pred             ccceeEEEEeccCCCCcccccccccccccceecccCCcc
Q 038877          189 LSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLE  227 (298)
Q Consensus       189 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  227 (298)
                      ...++.|++.+|....... .+  .++|+.|++++|.+.
T Consensus       303 p~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~Lt  338 (754)
T PRK15370        303 PSGITHLNVQSNSLTALPE-TL--PPGLKTLEAGENALT  338 (754)
T ss_pred             hhhHHHHHhcCCccccCCc-cc--cccceeccccCCccc
Confidence            2345555555554322111 11  134555555555443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.55  E-value=2.5e-15  Score=127.90  Aligned_cols=258  Identities=17%  Similarity=0.094  Sum_probs=177.7

Q ss_pred             ccCCCccEEEeecCCCcC-----CC-CCCCCCcccEEEecCCcccc------cCchHHhcCCCccEEEccCCcCCc-cCC
Q 038877            4 EEWEGAKRISLMKTGIQS-----PS-EIPTCPRLVTFLLDGNWIEE------ITDGFFRSMSSLRVLSLRRNLALS-KLP   70 (298)
Q Consensus         4 ~~~~~L~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~~-~~p   70 (298)
                      ..+..|+.+++.++.+..     ++ .+...+.+++++++++.++.      .....+..+++|+.|++++| .+. ..+
T Consensus        20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~   98 (319)
T cd00116          20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN-ALGPDGC   98 (319)
T ss_pred             HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC-CCChhHH
Confidence            345679999999998854     33 23677889999999986652      11234777889999999999 554 344


Q ss_pred             ccccCccC---CCeeeccCCccc-----ccchhhcCC-CcccEEeccCCccCCC----CchhhhcCCCcccEEEeeccCC
Q 038877           71 SGISNLVS---LHHLDLSWTRIR-----GLPQELKAL-EKLRYLSLEGTRHLSI----IPHQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus        71 ~~~~~l~~---L~~L~l~~~~~~-----~l~~~~~~l-~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~  137 (298)
                      ..+..+..   |++|++++|.+.     .+...+..+ ++|+.+++++|.....    ++. .+..+++|++|++++|.+
T Consensus        99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l  177 (319)
T cd00116          99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK-ALRANRDLKELNLANNGI  177 (319)
T ss_pred             HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH-HHHhCCCcCEEECcCCCC
Confidence            44544444   999999999876     233456677 8999999999965422    222 266788999999999988


Q ss_pred             ccccccccccccccCchhHHHhhcCCCCccEEEEEecCccc--hhhhccccccccceeEEEEeccCCCCcccccccc---
Q 038877          138 WSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLA--VQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAY---  212 (298)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~---  212 (298)
                      ..           .....++..+..+++|+.++++++....  ...+.......+.|+.|++++|...+.....+..   
T Consensus       178 ~~-----------~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~  246 (319)
T cd00116         178 GD-----------AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL  246 (319)
T ss_pred             ch-----------HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHh
Confidence            42           1122345667777899999999887643  2334444455688999999999765544333322   


Q ss_pred             --cccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh------hhhhc-CCCcEEEeecC
Q 038877          213 --MENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT------WLVFA-QNLKELRIDSC  279 (298)
Q Consensus       213 --l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~------~l~~~-~~L~~L~l~~c  279 (298)
                        .+.|+.|++.+|.+...+...+..    ....++.|+.+++++| .+++.+      .+... +.|+++++.+-
T Consensus       247 ~~~~~L~~L~l~~n~i~~~~~~~l~~----~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         247 SPNISLLTLSLSCNDITDDGAKDLAE----VLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             ccCCCceEEEccCCCCCcHHHHHHHH----HHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence              379999999999886422222110    0134589999999999 677542      12234 78999888764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.52  E-value=8.1e-14  Score=128.42  Aligned_cols=233  Identities=19%  Similarity=0.155  Sum_probs=149.6

Q ss_pred             CCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccC
Q 038877            7 EGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSW   86 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~   86 (298)
                      .+-..|+++++.++.+|... .++|+.|++.+|.++.+|..    .++|++|++++| .++.+|..   .++|+.|++.+
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~  271 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL----PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS  271 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC----CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence            45668999999999988632 25899999999999888763    588999999999 88888753   46899999999


Q ss_pred             CcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccc----ccccccccCchhHHHhhcC
Q 038877           87 TRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ----EEGSVLYDDAEPLMKELLG  162 (298)
Q Consensus        87 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~  162 (298)
                      |.+..+|...   .+|+.|++++| .+..+|.    .+++|+.|++++|.+..-...    ..+.+..+...    .+..
T Consensus       272 N~L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~----~LP~  339 (788)
T PRK15387        272 NPLTHLPALP---SGLCKLWIFGN-QLTSLPV----LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT----SLPT  339 (788)
T ss_pred             Cchhhhhhch---hhcCEEECcCC-ccccccc----cccccceeECCCCccccCCCCcccccccccccCccc----cccc
Confidence            9988887643   57889999998 4566665    247899999999988541000    00000000000    1111


Q ss_pred             C-CCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccc
Q 038877          163 L-KHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLF  241 (298)
Q Consensus       163 l-~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  241 (298)
                      + .+|+.|++++|....++.      ...+++.|++.+|......  .+  .+.|+.|++++|.+..++           
T Consensus       340 lp~~Lq~LdLS~N~Ls~LP~------lp~~L~~L~Ls~N~L~~LP--~l--~~~L~~LdLs~N~Lt~LP-----------  398 (788)
T PRK15387        340 LPSGLQELSVSDNQLASLPT------LPSELYKLWAYNNRLTSLP--AL--PSGLKELIVSGNRLTSLP-----------  398 (788)
T ss_pred             cccccceEecCCCccCCCCC------CCcccceehhhccccccCc--cc--ccccceEEecCCcccCCC-----------
Confidence            1 245666666554433221      1234556666655433211  11  246777777777665422           


Q ss_pred             cccCCcccEEeccCCCCCCchhhhhhcCCCcEEEeecCccccccc
Q 038877          242 RSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEII  286 (298)
Q Consensus       242 ~~~~~~L~~L~l~~c~~l~~l~~l~~~~~L~~L~l~~c~~l~~~~  286 (298)
                       ...++|+.|++++| .++.+|.  ...+|+.|++.++ .++.++
T Consensus       399 -~l~s~L~~LdLS~N-~LssIP~--l~~~L~~L~Ls~N-qLt~LP  438 (788)
T PRK15387        399 -VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRN-QLTRLP  438 (788)
T ss_pred             -CcccCCCEEEccCC-cCCCCCc--chhhhhhhhhccC-cccccC
Confidence             12367888888888 5776653  2346777777764 455555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.49  E-value=1.9e-14  Score=117.11  Aligned_cols=241  Identities=17%  Similarity=0.096  Sum_probs=173.9

Q ss_pred             CCCCCCcccEEEecCCccc----ccCchHHhcCCCccEEEccCCcCCc----cCCcc-------ccCccCCCeeeccCCc
Q 038877           24 EIPTCPRLVTFLLDGNWIE----EITDGFFRSMSSLRVLSLRRNLALS----KLPSG-------ISNLVSLHHLDLSWTR   88 (298)
Q Consensus        24 ~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~----~~p~~-------~~~l~~L~~L~l~~~~   88 (298)
                      ....+..++.+++++|.++    ......+.+.+.|+..++++- ..+    .+|+.       +-.+++|++++|+.|.
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            3466788999999999887    222333777788999998887 554    33432       4456799999999987


Q ss_pred             cc--c---cchhhcCCCcccEEeccCCccCCCCchh-------------hhcCCCcccEEEeeccCCccccccccccccc
Q 038877           89 IR--G---LPQELKALEKLRYLSLEGTRHLSIIPHQ-------------LISGFSKLEVLRLLWCGLWSRKEQEEGSVLY  150 (298)
Q Consensus        89 ~~--~---l~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  150 (298)
                      +.  .   +.+-+.+++.|++|.+.+|.. +....+             .++.-++||.+.+.+|++..           
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen-----------  171 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN-----------  171 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc-----------
Confidence            65  2   334577889999999999843 322111             24567889999999998743           


Q ss_pred             cCchhHHHhhcCCCCccEEEEEecCccc--hhhhccccccccceeEEEEeccCCCCcccc----cccccccccceecccC
Q 038877          151 DDAEPLMKELLGLKHLNVLSWSLHSSLA--VQKFLKYPKLLSITQSVGVYFCQSPPLNVL----HLAYMENLQELVILNS  224 (298)
Q Consensus       151 ~~~~~~~~~l~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~  224 (298)
                      .+...+...+..++.|+.+.+..++...  ...+......+++|++|++..|........    ++..+|+|+.|++++|
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            3456677888899999999999987632  334445567789999999999986433322    4778999999999999


Q ss_pred             CcceeeecchhhhhccccccCCcccEEeccCCCCCCchh------hhhhcCCCcEEEeecCcc
Q 038877          225 DLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT------WLVFAQNLKELRIDSCYD  281 (298)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~------~l~~~~~L~~L~l~~c~~  281 (298)
                      .+.+-+...+.  ..+. ..+|.|+.|.+.+| .++.-.      .....|.|+.|++++|..
T Consensus       252 ll~~~Ga~a~~--~al~-~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  252 LLENEGAIAFV--DALK-ESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccHHHHH--HHHh-ccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            98884443331  1222 45999999999999 565432      234589999999999965

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.48  E-value=5.1e-15  Score=122.28  Aligned_cols=239  Identities=20%  Similarity=0.133  Sum_probs=164.9

Q ss_pred             CccEEEeecCCCcCCCC--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeeec
Q 038877            8 GAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLDL   84 (298)
Q Consensus         8 ~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l   84 (298)
                      .-..++|.-|.|+.+|.  ++.+++|+.|+|++|.|+.|.+.+|..++.|..|.+.++.+++.+|. .|+++..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            34578899999999884  48899999999999999999888899999988887766339999976 6889999999999


Q ss_pred             cCCccccc-chhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcc----cccc----------cc----
Q 038877           85 SWTRIRGL-PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWS----RKEQ----------EE----  145 (298)
Q Consensus        85 ~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~----------~~----  145 (298)
                      .-|++.-+ ...+..+++|..|.+.++ ....++.+.+..+..++++++..|.+.-    ++.+          .+    
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            98888844 467889999999999888 5677777667778888887765544100    0000          00    


Q ss_pred             ------------------------c----cccccCch-hHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEE
Q 038877          146 ------------------------G----SVLYDDAE-PLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVG  196 (298)
Q Consensus       146 ------------------------~----~~~~~~~~-~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~  196 (298)
                                              .    ........ .-...+..+++|+++++++|....+..  ....-...++.|+
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~--~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED--GAFEGAAELQELY  304 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh--hhhcchhhhhhhh
Confidence                                    0    00000011 112346677788888887776655432  1122235567777


Q ss_pred             EeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCC
Q 038877          197 VYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQ  257 (298)
Q Consensus       197 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  257 (298)
                      +..|....+....+.++..|++|++.+|.+..+....+        .....|..|.+-.++
T Consensus       305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF--------~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF--------QTLFSLSTLNLLSNP  357 (498)
T ss_pred             cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc--------cccceeeeeehccCc
Confidence            77776666666667777788888888888777544444        445666666665543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.39  E-value=4e-13  Score=102.32  Aligned_cols=142  Identities=27%  Similarity=0.325  Sum_probs=39.5

Q ss_pred             cCCCcCCCCCCCCCcccEEEecCCcccccCchHHh-cCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccch
Q 038877           16 KTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFR-SMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQ   94 (298)
Q Consensus        16 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~   94 (298)
                      .+.|..++...++.++++|++.+|.|+.+..  ++ .+.+|++|++++| .++.+. ++..++.|++|++++|.++.+.+
T Consensus         6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~   81 (175)
T PF14580_consen    6 ANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISE   81 (175)
T ss_dssp             ------------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CH
T ss_pred             ccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCcccc
Confidence            3344444445555556666666666654433  33 3556666666666 555553 34556666666666666665544


Q ss_pred             hh-cCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEe
Q 038877           95 EL-KALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSL  173 (298)
Q Consensus        95 ~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~  173 (298)
                      .+ ..+++|++|++++|.....-.-..++.+++|+.|++.+|.++.            ........+..+|+|+.||-..
T Consensus        82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~------------~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE------------KKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG------------STTHHHHHHHH-TT-SEETTEE
T ss_pred             chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc------------hhhHHHHHHHHcChhheeCCEE
Confidence            33 3456666666666533211111125566666666666666642            1223445555666666666543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=3.7e-13  Score=112.75  Aligned_cols=212  Identities=20%  Similarity=0.196  Sum_probs=149.4

Q ss_pred             HhcCCCccEEEccCCcCCccCCc--cccCccCCCeeeccCCccc---ccchhhcCCCcccEEeccCCccCCCCchhhhcC
Q 038877           49 FRSMSSLRVLSLRRNLALSKLPS--GISNLVSLHHLDLSWTRIR---GLPQELKALEKLRYLSLEGTRHLSIIPHQLISG  123 (298)
Q Consensus        49 ~~~~~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  123 (298)
                      -.++.+|+.+.++++ .+...+.  -...|++++.|++++|-+.   .+.....++|+|+.|+++.|....-.....-..
T Consensus       117 Qsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  117 QSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             hhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            456778888888888 7776653  4567889999999988665   344667889999999998885543333333457


Q ss_pred             CCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCC
Q 038877          124 FSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSP  203 (298)
Q Consensus       124 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  203 (298)
                      +++|+.|.+++|.+.              ...+...+..+|+|+.|++..|......  ......++.|+.|++++|...
T Consensus       196 l~~lK~L~l~~CGls--------------~k~V~~~~~~fPsl~~L~L~~N~~~~~~--~~~~~i~~~L~~LdLs~N~li  259 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLS--------------WKDVQWILLTFPSLEVLYLEANEIILIK--ATSTKILQTLQELDLSNNNLI  259 (505)
T ss_pred             hhhhheEEeccCCCC--------------HHHHHHHHHhCCcHHHhhhhccccccee--cchhhhhhHHhhccccCCccc
Confidence            888999999999984              3456677778999999999988522222  223445678899999999875


Q ss_pred             Cccc-ccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCC--CCchhhhhhcCCCcEEEeecC
Q 038877          204 PLNV-LHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQK--AKDLTWLVFAQNLKELRIDSC  279 (298)
Q Consensus       204 ~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~--l~~l~~l~~~~~L~~L~l~~c  279 (298)
                      +... ..++.+|.|+.|+++.|.+.++..-....  .-....|++|+.|++..++-  |..+..+..+++|+.|.+...
T Consensus       260 ~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s--~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  260 DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVES--LDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN  336 (505)
T ss_pred             ccccccccccccchhhhhccccCcchhcCCCccc--hhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence            5543 34778999999999999988732211100  00125789999999999944  555555566777777775543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.34  E-value=1.3e-13  Score=114.83  Aligned_cols=266  Identities=20%  Similarity=0.228  Sum_probs=170.1

Q ss_pred             CccEEEeecCCCcC---CCCC-CCCCcccEEEecCC-cccc-cCchHHhcCCCccEEEccCCcCCccC--CccccCccCC
Q 038877            8 GAKRISLMKTGIQS---PSEI-PTCPRLVTFLLDGN-WIEE-ITDGFFRSMSSLRVLSLRRNLALSKL--PSGISNLVSL   79 (298)
Q Consensus         8 ~L~~L~l~~~~~~~---~~~~-~~~~~L~~L~l~~~-~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--p~~~~~l~~L   79 (298)
                      .|+.|+++|+.-..   +..+ ..|++++.|.+.+| .+++ ...++...|++|+++++..|..++..  ......|++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            47778888765333   3323 67888888888888 4542 22344667888888888887455422  2233457888


Q ss_pred             CeeeccCC-ccc--ccchhhcCCCcccEEeccCCcc--------------------------CCCCchh-hhcCCCcccE
Q 038877           80 HHLDLSWT-RIR--GLPQELKALEKLRYLSLEGTRH--------------------------LSIIPHQ-LISGFSKLEV  129 (298)
Q Consensus        80 ~~L~l~~~-~~~--~l~~~~~~l~~L~~L~l~~~~~--------------------------~~~~~~~-~~~~l~~L~~  129 (298)
                      +++++++| .++  .+......+..++.+...+|..                          ++..... +-..+..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            88888887 444  3333344455555555555521                          1111100 0122344444


Q ss_pred             EEeeccCCccccccccccccccCchhHHHhhc-CCCCccEEEEEecCccchhhhccccccccceeEEEEeccCC-CCccc
Q 038877          130 LRLLWCGLWSRKEQEEGSVLYDDAEPLMKELL-GLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQS-PPLNV  207 (298)
Q Consensus       130 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~  207 (298)
                      +..+++...              .......+. ++.+|+.+.+..+.......+....+.++.|+.+++..|.. .+...
T Consensus       299 l~~s~~t~~--------------~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL  364 (483)
T KOG4341|consen  299 LCYSSCTDI--------------TDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL  364 (483)
T ss_pred             hcccCCCCC--------------chHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhH
Confidence            444444331              233444444 56889999888877655555556677788899998888854 22233


Q ss_pred             cccc-ccccccceecccCCcce-eeecchhhhhccccccCCcccEEeccCCCCCCch--hhhhhcCCCcEEEeecCcccc
Q 038877          208 LHLA-YMENLQELVILNSDLEE-MKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDL--TWLVFAQNLKELRIDSCYDVE  283 (298)
Q Consensus       208 ~~l~-~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l--~~l~~~~~L~~L~l~~c~~l~  283 (298)
                      ..++ ++|.|+.|.+++|...+ .++..+..    ...+...|+.+.+++|+.+++-  ..+..+++||.+++.+|..+.
T Consensus       365 ~sls~~C~~lr~lslshce~itD~gi~~l~~----~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt  440 (483)
T KOG4341|consen  365 ASLSRNCPRLRVLSLSHCELITDEGIRHLSS----SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT  440 (483)
T ss_pred             hhhccCCchhccCChhhhhhhhhhhhhhhhh----ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence            3443 58999999999988766 54444421    2367899999999999999984  578899999999999998887


Q ss_pred             cccccCcc
Q 038877          284 EIISVDKL  291 (298)
Q Consensus       284 ~~~~~~~~  291 (298)
                      +.+...-+
T Consensus       441 k~~i~~~~  448 (483)
T KOG4341|consen  441 KEAISRFA  448 (483)
T ss_pred             hhhhHHHH
Confidence            76644433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.33  E-value=1.6e-12  Score=99.13  Aligned_cols=130  Identities=27%  Similarity=0.321  Sum_probs=56.1

Q ss_pred             cccCCCccEEEeecCCCcCCCCCC-CCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccc-cCccCCC
Q 038877            3 VEEWEGAKRISLMKTGIQSPSEIP-TCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLH   80 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~-~~l~~L~   80 (298)
                      +-++.+++.|++.+|.|+.+..+. .+.+|+.|++++|.+..+..  +..+++|++|++++| .++.+.+.+ ..+++|+
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             cccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCcCC
Confidence            445667999999999999988885 68999999999999998765  788999999999999 898886655 4689999


Q ss_pred             eeeccCCcccccc--hhhcCCCcccEEeccCCccCCC--CchhhhcCCCcccEEEeecc
Q 038877           81 HLDLSWTRIRGLP--QELKALEKLRYLSLEGTRHLSI--IPHQLISGFSKLEVLRLLWC  135 (298)
Q Consensus        81 ~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~  135 (298)
                      +|++++|.+..+.  ..+..+++|++|++.+|.....  .-..++..+|+|+.||-...
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            9999999988554  4578899999999999855432  12344788999999986543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.23  E-value=8.6e-12  Score=117.39  Aligned_cols=281  Identities=21%  Similarity=0.257  Sum_probs=165.7

Q ss_pred             cCCCccEEEeecCC--CcCCCC--CCCCCcccEEEecCC-cccccCchHHhcCCCccEEEccCCcCCccCCccccCccCC
Q 038877            5 EWEGAKRISLMKTG--IQSPSE--IPTCPRLVTFLLDGN-WIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSL   79 (298)
Q Consensus         5 ~~~~L~~L~l~~~~--~~~~~~--~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L   79 (298)
                      .+++|+.|-+..+.  +..++.  +..++.|++|++++| .+..+|.+ ++.+-+|++|+++++ .++.+|.+++++..|
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT-GISHLPSGLGNLKKL  620 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC-CccccchHHHHHHhh
Confidence            45678898888886  555554  588999999999998 56688888 999999999999999 999999999999999


Q ss_pred             CeeeccCC-cccccchhhcCCCcccEEeccCCccC-CCCchhhhcCCCcccEEEeeccCCcccccc-----------ccc
Q 038877           80 HHLDLSWT-RIRGLPQELKALEKLRYLSLEGTRHL-SIIPHQLISGFSKLEVLRLLWCGLWSRKEQ-----------EEG  146 (298)
Q Consensus        80 ~~L~l~~~-~~~~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-----------~~~  146 (298)
                      .+|++..+ .+..++.....+++|++|.+...... +....+-+.++.+|+.+....... ....+           ...
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l  699 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSL  699 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhh
Confidence            99999987 44456666777999999998765311 111111134455555555432221 00000           000


Q ss_pred             cccccCchhHHHhhcCCCCccEEEEEecCccchhh-hc-cccc--cccceeEEEEeccCCCCcccccccccccccceecc
Q 038877          147 SVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQK-FL-KYPK--LLSITQSVGVYFCQSPPLNVLHLAYMENLQELVIL  222 (298)
Q Consensus       147 ~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~-~~-~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  222 (298)
                      ..........+..+..+.+|+.|.+..+....... .. ....  .++++.++.+.+|.... ...+..-.|+|+.|.+.
T Consensus       700 ~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r-~l~~~~f~~~L~~l~l~  778 (889)
T KOG4658|consen  700 SIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR-DLTWLLFAPHLTSLSLV  778 (889)
T ss_pred             hhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc-ccchhhccCcccEEEEe
Confidence            00111223344556667777777777766532111 00 0000  02233333444442211 11123345889999999


Q ss_pred             cCCcceeeecchhhhhccc--cccCCcccEE-eccCCCCCCchhhh-hhcCCCcEEEeecCcccccccccC
Q 038877          223 NSDLEEMKIDSAEEVKKLF--RSGFRSLNTV-SVDYCQKAKDLTWL-VFAQNLKELRIDSCYDVEEIISVD  289 (298)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~--~~~~~~L~~L-~l~~c~~l~~l~~l-~~~~~L~~L~l~~c~~l~~~~~~~  289 (298)
                      +|...+..+.....-....  .-.|.++..+ .+.+.+.++.+-+. ..++.|+++.+..|+++..+|...
T Consensus       779 ~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~  849 (889)
T KOG4658|consen  779 SCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLS  849 (889)
T ss_pred             cccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCcccc
Confidence            8887773322221000000  1234444444 24444444444332 235568889999999888887553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=2e-12  Score=108.47  Aligned_cols=130  Identities=22%  Similarity=0.171  Sum_probs=64.6

Q ss_pred             CCCccEEEeecCCCcCCC---CCCCCCcccEEEecCCcccc--cCchHHhcCCCccEEEccCCcCCccCCc--cccCccC
Q 038877            6 WEGAKRISLMKTGIQSPS---EIPTCPRLVTFLLDGNWIEE--ITDGFFRSMSSLRVLSLRRNLALSKLPS--GISNLVS   78 (298)
Q Consensus         6 ~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~p~--~~~~l~~   78 (298)
                      +.+|+.+.+.++.+..++   ....|++++.|++++|-+..  ....+...+++|+.|+++.| .+....+  .-..+++
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLSH  198 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhhh
Confidence            455666666666555543   23556666666666664431  11223555666666666666 3332111  1123455


Q ss_pred             CCeeeccCCccc--ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCC
Q 038877           79 LHHLDLSWTRIR--GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus        79 L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  137 (298)
                      |+.|.++.|.++  ++.......|+|..|++..|......... ..-+..|+.|++++|.+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~l  258 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNL  258 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcc
Confidence            666666666555  33344455566666666555211111110 23344455666665555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.18  E-value=7e-12  Score=102.40  Aligned_cols=239  Identities=16%  Similarity=0.125  Sum_probs=166.5

Q ss_pred             cccCCCccEEEeecCCCcC-----C-CCCCCCCcccEEEecCCccc----ccCc------hHHhcCCCccEEEccCCcCC
Q 038877            3 VEEWEGAKRISLMKTGIQS-----P-SEIPTCPRLVTFLLDGNWIE----EITD------GFFRSMSSLRVLSLRRNLAL   66 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~-----~-~~~~~~~~L~~L~l~~~~~~----~~~~------~~~~~~~~L~~L~l~~~~~~   66 (298)
                      +..+..+..+++++|.+..     + +.+..-++|+..+++.-..+    .+|+      .++..+++|+++++++| .+
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-A~  104 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN-AF  104 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-cc
Confidence            4567889999999998865     2 23466779999999876433    3332      23667789999999999 66


Q ss_pred             c-cCC----ccccCccCCCeeeccCCcccccc--------------hhhcCCCcccEEeccCCccCCCCch----hhhcC
Q 038877           67 S-KLP----SGISNLVSLHHLDLSWTRIRGLP--------------QELKALEKLRYLSLEGTRHLSIIPH----QLISG  123 (298)
Q Consensus        67 ~-~~p----~~~~~l~~L~~L~l~~~~~~~l~--------------~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~  123 (298)
                      + .-+    .-+..+..|++|+|.+|.+....              .....-++|+++...+|+ +...+.    ..+..
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~  183 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQS  183 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHh
Confidence            5 222    23567889999999999877321              234566789999999884 333332    12566


Q ss_pred             CCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccch--hhhccccccccceeEEEEeccC
Q 038877          124 FSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAV--QKFLKYPKLLSITQSVGVYFCQ  201 (298)
Q Consensus       124 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~  201 (298)
                      .+.|+.+.++.|.+..           .+.......+..+++|+.|++..|.+..-  ..+.......++|+.+++.+|.
T Consensus       184 ~~~leevr~~qN~I~~-----------eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRP-----------EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             ccccceEEEecccccC-----------chhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence            7899999999998854           22345678899999999999999877432  2233333445678999999998


Q ss_pred             CCCccccc----c-cccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCC
Q 038877          202 SPPLNVLH----L-AYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKA  259 (298)
Q Consensus       202 ~~~~~~~~----l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l  259 (298)
                      .......+    + ...|.|+.|.+.+|.+..-....+.    ..-...|.|+.|++++| .+
T Consensus       253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la----~~~~ek~dL~kLnLngN-~l  310 (382)
T KOG1909|consen  253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA----ACMAEKPDLEKLNLNGN-RL  310 (382)
T ss_pred             cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH----HHHhcchhhHHhcCCcc-cc
Confidence            65443332    3 3479999999999988762211110    01134799999999999 55

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.09  E-value=6.5e-12  Score=108.68  Aligned_cols=173  Identities=24%  Similarity=0.336  Sum_probs=118.6

Q ss_pred             CCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeec
Q 038877            6 WEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDL   84 (298)
Q Consensus         6 ~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l   84 (298)
                      |..|..+.++.|.+..+| .+..+..|++++|+.|++..+|.. +..++ |++|-+++| +++.+|..++....|..|+.
T Consensus        97 f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~  173 (722)
T KOG0532|consen   97 FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDV  173 (722)
T ss_pred             HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-hhcCc-ceeEEEecC-ccccCCcccccchhHHHhhh
Confidence            344555566666666655 346677777777777777766665 44444 777777777 77777777777777777777


Q ss_pred             cCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCC
Q 038877           85 SWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLK  164 (298)
Q Consensus        85 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  164 (298)
                      +.|.+..+|..++.+.+|+.|.+..+ ....+|.+ +..+ .|..||+++|.+..                ++-.|..++
T Consensus       174 s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~~L-pLi~lDfScNkis~----------------iPv~fr~m~  234 (722)
T KOG0532|consen  174 SKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LCSL-PLIRLDFSCNKISY----------------LPVDFRKMR  234 (722)
T ss_pred             hhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-HhCC-ceeeeecccCceee----------------cchhhhhhh
Confidence            77777777777777778887777777 34556665 5544 47888888887744                888899999


Q ss_pred             CccEEEEEecCccchhhhccccccccceeEEEEecc
Q 038877          165 HLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFC  200 (298)
Q Consensus       165 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  200 (298)
                      +|++|.+..|+...-..-.-..+...-+++|+...|
T Consensus       235 ~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  235 HLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             hheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            999999998887543321112223344577777776

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.03  E-value=4.9e-11  Score=95.70  Aligned_cols=211  Identities=18%  Similarity=0.136  Sum_probs=142.4

Q ss_pred             ccEEEecCCccccc--CchHHhcCCCccEEEccCCcCCcc---CCccccCccCCCeeeccCCcccccchhh-cCCCcccE
Q 038877           31 LVTFLLDGNWIEEI--TDGFFRSMSSLRVLSLRRNLALSK---LPSGISNLVSLHHLDLSWTRIRGLPQEL-KALEKLRY  104 (298)
Q Consensus        31 L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~---~p~~~~~l~~L~~L~l~~~~~~~l~~~~-~~l~~L~~  104 (298)
                      +..+-+-++.+...  ...+-..+..++.+|+.+| .++.   +...+.+++.|++|+++.|.+..--... ....+|+.
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            33455556665522  2233455778888888888 6663   3445667888899999888776221222 35668888


Q ss_pred             EeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCC-CCccEEEEEecCccchhhhc
Q 038877          105 LSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGL-KHLNVLSWSLHSSLAVQKFL  183 (298)
Q Consensus       105 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~l~l~~~~~~~~~~~~  183 (298)
                      +-+.++...-.-...++..+|+++.|+++.|....             ..........+ +.++++....|....+....
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq-------------~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~  192 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ-------------LNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN  192 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhh-------------hccccccccccchhhhhhhcCCcHHHHHHHHH
Confidence            88888744322223347788888999888885421             00111122223 46777778788777777777


Q ss_pred             cccccccceeEEEEeccCCCCc-ccccccccccccceecccCCcce-eeecchhhhhccccccCCcccEEeccCCCCCCc
Q 038877          184 KYPKLLSITQSVGVYFCQSPPL-NVLHLAYMENLQELVILNSDLEE-MKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKD  261 (298)
Q Consensus       184 ~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  261 (298)
                      ...+.++++..+.+..|+.... .......+|.+..|+++.+.+.+ ..++.+        .+|++|+.|.+.+.+-+..
T Consensus       193 ~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~L--------n~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  193 KLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDAL--------NGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             hHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHH--------cCCchhheeeccCCccccc
Confidence            7778889999999998876433 33345667888899999998888 677777        7899999999999887766


Q ss_pred             hh
Q 038877          262 LT  263 (298)
Q Consensus       262 l~  263 (298)
                      +.
T Consensus       265 l~  266 (418)
T KOG2982|consen  265 LR  266 (418)
T ss_pred             cc
Confidence            53

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.01  E-value=1.1e-11  Score=107.21  Aligned_cols=213  Identities=21%  Similarity=0.198  Sum_probs=148.9

Q ss_pred             EEeecCCCcCCCCC---CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCc
Q 038877           12 ISLMKTGIQSPSEI---PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTR   88 (298)
Q Consensus        12 L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~   88 (298)
                      |.|++-.++.+|..   -.+.--...+++.|.+..+|.. +..+-.|..+.+..| .+..+|..++++..|.+++++.|.
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ  132 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch
Confidence            45556566666533   3344455678888888888877 777788888888888 788888888888889999999888


Q ss_pred             ccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccE
Q 038877           89 IRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNV  168 (298)
Q Consensus        89 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  168 (298)
                      +..+|..+..++ |+.|.+++| .++.+|.+ ++..++|..|+.+.|.+.                .++..+..+..|+.
T Consensus       133 lS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~-ig~~~tl~~ld~s~nei~----------------slpsql~~l~slr~  193 (722)
T KOG0532|consen  133 LSHLPDGLCDLP-LKVLIVSNN-KLTSLPEE-IGLLPTLAHLDVSKNEIQ----------------SLPSQLGYLTSLRD  193 (722)
T ss_pred             hhcCChhhhcCc-ceeEEEecC-ccccCCcc-cccchhHHHhhhhhhhhh----------------hchHHhhhHHHHHH
Confidence            888888888776 888888887 56778877 778888888888888774                37777888888888


Q ss_pred             EEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcc
Q 038877          169 LSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSL  248 (298)
Q Consensus       169 l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L  248 (298)
                      +.+..+....+..-..    .=.|.+|+++.|+ ....+..+..+..|++|-+..|....-+...+.      .+-..-.
T Consensus       194 l~vrRn~l~~lp~El~----~LpLi~lDfScNk-is~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~------kGkVHIF  262 (722)
T KOG0532|consen  194 LNVRRNHLEDLPEELC----SLPLIRLDFSCNK-ISYLPVDFRKMRHLQVLQLENNPLQSPPAQICE------KGKVHIF  262 (722)
T ss_pred             HHHhhhhhhhCCHHHh----CCceeeeecccCc-eeecchhhhhhhhheeeeeccCCCCCChHHHHh------ccceeee
Confidence            8888776654432111    1235778887774 233344567778888888888877663322221      1233444


Q ss_pred             cEEeccCC
Q 038877          249 NTVSVDYC  256 (298)
Q Consensus       249 ~~L~l~~c  256 (298)
                      ++|++.-|
T Consensus       263 KyL~~qA~  270 (722)
T KOG0532|consen  263 KYLSTQAC  270 (722)
T ss_pred             eeecchhc
Confidence            55666655

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.00  E-value=3.7e-10  Score=99.04  Aligned_cols=105  Identities=34%  Similarity=0.468  Sum_probs=49.5

Q ss_pred             CCCcccEEEecCCcccccCchHHhcCC-CccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEE
Q 038877           27 TCPRLVTFLLDGNWIEEITDGFFRSMS-SLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYL  105 (298)
Q Consensus        27 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L  105 (298)
                      ..+.++.|.+.++.+.+++.. ..... +|+.|+++++ .+..+|..+..+++|+.|+++.|.+..++...+..++|+.+
T Consensus       114 ~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L  191 (394)
T COG4886         114 ELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL  191 (394)
T ss_pred             cccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence            334455555555554444443 23332 4555555555 44444444445555555555555555554444445555555


Q ss_pred             eccCCccCCCCchhhhcCCCcccEEEeecc
Q 038877          106 SLEGTRHLSIIPHQLISGFSKLEVLRLLWC  135 (298)
Q Consensus       106 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  135 (298)
                      +++++ .+..+|.. +..+..|+.+.+.+|
T Consensus       192 ~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N  219 (394)
T COG4886         192 DLSGN-KISDLPPE-IELLSALEELDLSNN  219 (394)
T ss_pred             eccCC-ccccCchh-hhhhhhhhhhhhcCC
Confidence            55554 33444442 233334555555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=1.3e-11  Score=98.88  Aligned_cols=182  Identities=23%  Similarity=0.187  Sum_probs=116.5

Q ss_pred             CCCeeeccCCccc--ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchh
Q 038877           78 SLHHLDLSWTRIR--GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEP  155 (298)
Q Consensus        78 ~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  155 (298)
                      .||++|+++..++  .+...+.++.+|+.|.+.+....+.+... ++.=.+|+.++++.+.-.+             ...
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t-------------~n~  251 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFT-------------ENA  251 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccc-------------hhH
Confidence            4788888877665  56666778888888888887555555554 6667778888887764322             334


Q ss_pred             HHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCC--CCcccccc-cccccccceecccCCcce-eee
Q 038877          156 LMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQS--PPLNVLHL-AYMENLQELVILNSDLEE-MKI  231 (298)
Q Consensus       156 ~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~l-~~l~~L~~L~l~~~~~~~-~~~  231 (298)
                      ..--+++|+.|..|+++.|......---..+.....+++|+++++..  .......+ ..+|+|..|++++|.... -..
T Consensus       252 ~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~  331 (419)
T KOG2120|consen  252 LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF  331 (419)
T ss_pred             HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH
Confidence            45566778888888888766532211111233445677888887752  11222223 457888888888887666 222


Q ss_pred             cchhhhhccccccCCcccEEeccCCCCCCch--hhhhhcCCCcEEEeecCcc
Q 038877          232 DSAEEVKKLFRSGFRSLNTVSVDYCQKAKDL--TWLVFAQNLKELRIDSCYD  281 (298)
Q Consensus       232 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l--~~l~~~~~L~~L~l~~c~~  281 (298)
                      ..+        -.|+.|++|.++.|..+---  -.+..+|.|.+|++.||-.
T Consensus       332 ~~~--------~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  332 QEF--------FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             HHH--------HhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            222        36888888888888655421  1245688888888888844

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.97  E-value=4.4e-10  Score=98.56  Aligned_cols=176  Identities=25%  Similarity=0.287  Sum_probs=137.9

Q ss_pred             cccCCCccEEEeecCCCcCCCCCCCCC--cccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCC
Q 038877            3 VEEWEGAKRISLMKTGIQSPSEIPTCP--RLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH   80 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~   80 (298)
                      +...+.+..+++.++.++.++......  +|+.|++++|.+..++.. +..+++|+.|+++.| .+..+|...+...+|+
T Consensus       112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~  189 (394)
T COG4886         112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN  189 (394)
T ss_pred             hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence            344567899999999999988775543  899999999999888644 889999999999999 9999988766889999


Q ss_pred             eeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh
Q 038877           81 HLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL  160 (298)
Q Consensus        81 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  160 (298)
                      .|++++|.+..+|........|+.+.+++++.......  +.++.++..+.+.++++..                .+..+
T Consensus       190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~--~~~~~~l~~l~l~~n~~~~----------------~~~~~  251 (394)
T COG4886         190 NLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSS--LSNLKNLSGLELSNNKLED----------------LPESI  251 (394)
T ss_pred             heeccCCccccCchhhhhhhhhhhhhhcCCcceecchh--hhhcccccccccCCceeee----------------ccchh
Confidence            99999999999998877788899999999854333333  7888888888887777632                25666


Q ss_pred             cCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCC
Q 038877          161 LGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQS  202 (298)
Q Consensus       161 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  202 (298)
                      ..++.++.++++.+....+..    ......++.|+++++..
T Consensus       252 ~~l~~l~~L~~s~n~i~~i~~----~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         252 GNLSNLETLDLSNNQISSISS----LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             ccccccceecccccccccccc----ccccCccCEEeccCccc
Confidence            677778888888877665554    22335667777777643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.89  E-value=2.2e-10  Score=92.23  Aligned_cols=128  Identities=20%  Similarity=0.215  Sum_probs=74.1

Q ss_pred             CcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEEecc
Q 038877           29 PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLE  108 (298)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~  108 (298)
                      ..|+++++++|.|+.+.++ +.-.|.+++|+++.| .+..+-. ++.+++|+.|++++|.+.++...-.++-+.+.|.+.
T Consensus       284 q~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDES-VKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhhccccccchhhhhhh-hhhccceeEEecccc-ceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence            3466666666666655555 555666666666666 5554432 556666666666666666554444455556666666


Q ss_pred             CCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCc
Q 038877          109 GTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSS  176 (298)
Q Consensus       109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~  176 (298)
                      +| .+..+..  ++++.+|..|++++|++..              .+-...+++++-|+.+.+.+|+.
T Consensus       361 ~N-~iE~LSG--L~KLYSLvnLDl~~N~Ie~--------------ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  361 QN-KIETLSG--LRKLYSLVNLDLSSNQIEE--------------LDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hh-hHhhhhh--hHhhhhheeccccccchhh--------------HHHhcccccccHHHHHhhcCCCc
Confidence            65 3333332  5666666666666666631              22334556666666666665554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.86  E-value=5.6e-10  Score=89.93  Aligned_cols=198  Identities=17%  Similarity=0.166  Sum_probs=131.8

Q ss_pred             ccCCCccEEEeecCCCcCCCCC-CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCc-CCc--cCCccccCccCC
Q 038877            4 EEWEGAKRISLMKTGIQSPSEI-PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNL-ALS--KLPSGISNLVSL   79 (298)
Q Consensus         4 ~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~--~~p~~~~~l~~L   79 (298)
                      .-+.+|..+.++.+.-..+.++ ..=|.|+++......+...+.  +-....+.  |..... ...  .+-..+.....|
T Consensus       211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~--l~pe~~~~--D~~~~E~~t~~G~~~~~~dTWq~L  286 (490)
T KOG1259|consen  211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS--LLPETILA--DPSGSEPSTSNGSALVSADTWQEL  286 (490)
T ss_pred             HHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccc--ccchhhhc--CccCCCCCccCCceEEecchHhhh
Confidence            3467788888888765555555 445778888777665543222  11112222  222210 111  111123335678


Q ss_pred             CeeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHh
Q 038877           80 HHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKE  159 (298)
Q Consensus        80 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (298)
                      +++++++|.++.+.+++.-+|+++.|++++| .+..+..  +..+++|+.|++++|.+..                ....
T Consensus       287 telDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n--La~L~~L~~LDLS~N~Ls~----------------~~Gw  347 (490)
T KOG1259|consen  287 TELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN--LAELPQLQLLDLSGNLLAE----------------CVGW  347 (490)
T ss_pred             hhccccccchhhhhhhhhhccceeEEecccc-ceeeehh--hhhcccceEeecccchhHh----------------hhhh
Confidence            9999999999988888888999999999998 4445544  7889999999999988743                3333


Q ss_pred             hcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCC-cccccccccccccceecccCCcce
Q 038877          160 LLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPP-LNVLHLAYMENLQELVILNSDLEE  228 (298)
Q Consensus       160 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~  228 (298)
                      -..+.++++|.+..|...+...+.+.    =+|..|++.+|.+.. .....++++|.|+.+.+.+|.+..
T Consensus       348 h~KLGNIKtL~La~N~iE~LSGL~KL----YSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  348 HLKLGNIKTLKLAQNKIETLSGLRKL----YSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             HhhhcCEeeeehhhhhHhhhhhhHhh----hhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            44677888999988876655544332    345788888887643 334568999999999999998766

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=1.6e-10  Score=92.76  Aligned_cols=198  Identities=18%  Similarity=0.131  Sum_probs=126.6

Q ss_pred             CCccEEEccCCcCCc--cCCccccCccCCCeeeccCCccc-ccchhhcCCCcccEEeccCCccCCCCch-hhhcCCCccc
Q 038877           53 SSLRVLSLRRNLALS--KLPSGISNLVSLHHLDLSWTRIR-GLPQELKALEKLRYLSLEGTRHLSIIPH-QLISGFSKLE  128 (298)
Q Consensus        53 ~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~  128 (298)
                      ..|+++|+++. .++  .+-..+..|.+|+.|.+.++.+. .+...+..-.+|+.++++.|..+++... -++.+++.|.
T Consensus       185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            45777888777 554  33345677788888888887776 5556677777888888888866555432 2357788888


Q ss_pred             EEEeeccCCccccccccccccccCchhHHHhhcCC-CCccEEEEEecCcc-chhhhccccccccceeEEEEeccCC-CCc
Q 038877          129 VLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGL-KHLNVLSWSLHSSL-AVQKFLKYPKLLSITQSVGVYFCQS-PPL  205 (298)
Q Consensus       129 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~l~l~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~-~~~  205 (298)
                      .|+++.|.+..              ..+-....+. +.|..|+++++... ....+....+.++++..|++++|-+ .+-
T Consensus       264 ~LNlsWc~l~~--------------~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~  329 (419)
T KOG2120|consen  264 ELNLSWCFLFT--------------EKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND  329 (419)
T ss_pred             hcCchHhhccc--------------hhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch
Confidence            88888887632              1122222222 56777777765531 1224445567788888888888764 333


Q ss_pred             ccccccccccccceecccCCcce-eeecchhhhhccccccCCcccEEeccCCCCCCchhh-hhhcCCCcE
Q 038877          206 NVLHLAYMENLQELVILNSDLEE-MKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTW-LVFAQNLKE  273 (298)
Q Consensus       206 ~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-l~~~~~L~~  273 (298)
                      ....+.+++.|+.|.++.|-... -.+-.+        ...|.|.+|++.+|..=+.+.. ...+|+|+.
T Consensus       330 ~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l--------~s~psl~yLdv~g~vsdt~mel~~e~~~~lki  391 (419)
T KOG2120|consen  330 CFQEFFKFNYLQHLSLSRCYDIIPETLLEL--------NSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI  391 (419)
T ss_pred             HHHHHHhcchheeeehhhhcCCChHHeeee--------ccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence            44457788889999888886544 111122        5778999999998844333432 345677663

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=4.2e-09  Score=66.19  Aligned_cols=59  Identities=36%  Similarity=0.518  Sum_probs=32.8

Q ss_pred             CcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeeeccCCc
Q 038877           29 PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLDLSWTR   88 (298)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~   88 (298)
                      |+|++|++++|.+..++..+|..+++|++|++++| .+..++ ..|.++++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34555666666555555544555666666666655 555443 345555555555555553

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.78  E-value=1.1e-08  Score=81.51  Aligned_cols=216  Identities=18%  Similarity=0.083  Sum_probs=148.6

Q ss_pred             CCCCcccEEEecCCcccc----cCchHHhcCCCccEEEccCCcCCcc----CC-------ccccCccCCCeeeccCCccc
Q 038877           26 PTCPRLVTFLLDGNWIEE----ITDGFFRSMSSLRVLSLRRNLALSK----LP-------SGISNLVSLHHLDLSWTRIR   90 (298)
Q Consensus        26 ~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~p-------~~~~~l~~L~~L~l~~~~~~   90 (298)
                      ..+..++.+++++|.|+.    .....+..-.+|++.+++.- +.+.    ++       +.+..|++|+..+++.|.+.
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            457889999999998871    11223666788999998877 5542    22       34567899999999999776


Q ss_pred             -ccc----hhhcCCCcccEEeccCCccCCCCchhh-------------hcCCCcccEEEeeccCCccccccccccccccC
Q 038877           91 -GLP----QELKALEKLRYLSLEGTRHLSIIPHQL-------------ISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDD  152 (298)
Q Consensus        91 -~l~----~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  152 (298)
                       ..|    ..+++.+.|.+|.+++| ..+.+..+-             .++-|.|+.+.+..|++..           .+
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-----------gs  173 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-----------GS  173 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-----------Cc
Confidence             443    45788899999999998 334333211             3467889999999998843           22


Q ss_pred             chhHHHhhcCCCCccEEEEEecCccc--hhh-hccccccccceeEEEEeccCCCCcccc----cccccccccceecccCC
Q 038877          153 AEPLMKELLGLKHLNVLSWSLHSSLA--VQK-FLKYPKLLSITQSVGVYFCQSPPLNVL----HLAYMENLQELVILNSD  225 (298)
Q Consensus       153 ~~~~~~~l~~l~~L~~l~l~~~~~~~--~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~  225 (298)
                      .......+.+...|+.+.+..|+...  +.. .......+++|+.|+++.|........    ++..++.|+.|.+.+|-
T Consensus       174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence            34455667777899999999988632  111 111234578899999999986443332    46778999999999998


Q ss_pred             cceeeecchhhhhccccccCCcccEEeccCC
Q 038877          226 LEEMKIDSAEEVKKLFRSGFRSLNTVSVDYC  256 (298)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  256 (298)
                      ....+...+.  ..+....+|+|+.|....+
T Consensus       254 ls~~G~~~v~--~~f~e~~~p~l~~L~~~Yn  282 (388)
T COG5238         254 LSNEGVKSVL--RRFNEKFVPNLMPLPGDYN  282 (388)
T ss_pred             hccccHHHHH--HHhhhhcCCCccccccchh
Confidence            8774444331  2233356788888877766

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.77  E-value=4.3e-10  Score=94.15  Aligned_cols=252  Identities=17%  Similarity=0.154  Sum_probs=167.3

Q ss_pred             ccCCCccEEEeecCC-CcC--CCCC-CCCCcccEEEecCC-cccc-cCchHHhcCCCccEEEccCCcCCcc--CCccccC
Q 038877            4 EEWEGAKRISLMKTG-IQS--PSEI-PTCPRLVTFLLDGN-WIEE-ITDGFFRSMSSLRVLSLRRNLALSK--LPSGISN   75 (298)
Q Consensus         4 ~~~~~L~~L~l~~~~-~~~--~~~~-~~~~~L~~L~l~~~-~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~--~p~~~~~   75 (298)
                      ..|+++++|.+.++. +++  .-.+ ..|+.|+.|++..| .+++ ........+++|+++++++|..++.  +-....+
T Consensus       161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG  240 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG  240 (483)
T ss_pred             hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence            457888888888765 333  1122 66888888888886 5552 2233466788888888888855542  1112233


Q ss_pred             ccCCCeeeccCC---------------------------ccc--ccchhhcCCCcccEEeccCCccCCCCch-hhhcCCC
Q 038877           76 LVSLHHLDLSWT---------------------------RIR--GLPQELKALEKLRYLSLEGTRHLSIIPH-QLISGFS  125 (298)
Q Consensus        76 l~~L~~L~l~~~---------------------------~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~  125 (298)
                      +..++.+.+.+|                           .++  .+...-..+..|++++.+++...+..+- ....+.+
T Consensus       241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~  320 (483)
T KOG4341|consen  241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH  320 (483)
T ss_pred             chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence            344444433332                           122  1112223467889999998866554442 2245789


Q ss_pred             cccEEEeeccCCccccccccccccccCchhHHHhh-cCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCC-C
Q 038877          126 KLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL-LGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQS-P  203 (298)
Q Consensus       126 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~  203 (298)
                      +|+.+.+.+|+..+              +.-+..+ ..+++|+.+++..+.......+......++.++++.++.|.. .
T Consensus       321 ~L~~l~l~~c~~fs--------------d~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~it  386 (483)
T KOG4341|consen  321 NLQVLELSGCQQFS--------------DRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELIT  386 (483)
T ss_pred             ceEEEeccccchhh--------------hhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhh
Confidence            99999999987522              1122333 367899999999888766667888888999999999998864 3


Q ss_pred             Ccccccc----cccccccceecccCCcce-eeecchhhhhccccccCCcccEEeccCCCCCCchh---hhhhcCCCcEEE
Q 038877          204 PLNVLHL----AYMENLQELVILNSDLEE-MKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT---WLVFAQNLKELR  275 (298)
Q Consensus       204 ~~~~~~l----~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~l~~~~~L~~L~  275 (298)
                      +.....+    ..+..|+.+.++++.... ...+++        ..++.|+.+++-+|..++.-+   +-.++|+++...
T Consensus       387 D~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l--------~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  387 DEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL--------SICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             hhhhhhhhhccccccccceeeecCCCCchHHHHHHH--------hhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence            3322222    346789999999999888 666776        678999999999998888743   345688877654


Q ss_pred             ee
Q 038877          276 ID  277 (298)
Q Consensus       276 l~  277 (298)
                      ..
T Consensus       459 ~~  460 (483)
T KOG4341|consen  459 YF  460 (483)
T ss_pred             hc
Confidence            43

>PLN03150 hypothetical protein; Provisional

Probab=98.68  E-value=8.4e-08  Score=88.55  Aligned_cols=103  Identities=22%  Similarity=0.406  Sum_probs=53.4

Q ss_pred             ccEEEecCCccc-ccCchHHhcCCCccEEEccCCcCCc-cCCccccCccCCCeeeccCCccc-ccchhhcCCCcccEEec
Q 038877           31 LVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALS-KLPSGISNLVSLHHLDLSWTRIR-GLPQELKALEKLRYLSL  107 (298)
Q Consensus        31 L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l  107 (298)
                      ++.|+++++.+. .+|.. +..+++|+.|++++| .+. .+|..++.+++|+.|++++|.+. .+|..++.+++|+.|++
T Consensus       420 v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEECCCCCccccCCHH-HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            455555555554 34433 555555555555555 333 45555555555555555555554 45555555555555555


Q ss_pred             cCCccCCCCchhhhcC-CCcccEEEeeccC
Q 038877          108 EGTRHLSIIPHQLISG-FSKLEVLRLLWCG  136 (298)
Q Consensus       108 ~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~  136 (298)
                      ++|...+.+|.. ++. ..++..+++.+|.
T Consensus       498 s~N~l~g~iP~~-l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        498 NGNSLSGRVPAA-LGGRLLHRASFNFTDNA  526 (623)
T ss_pred             cCCcccccCChH-HhhccccCceEEecCCc
Confidence            555444455543 322 2334445554443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.63  E-value=3.3e-08  Score=62.07  Aligned_cols=57  Identities=23%  Similarity=0.345  Sum_probs=52.2

Q ss_pred             CCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCC
Q 038877            7 EGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRN   63 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   63 (298)
                      ++|+.|++++|.+..+|  .+..+++|++|++++|.+..+++..|..+++|+.|++++|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            57899999999999977  3488999999999999999888877999999999999998

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=1.9e-08  Score=81.11  Aligned_cols=226  Identities=15%  Similarity=0.103  Sum_probs=140.0

Q ss_pred             EEEeecCCCcCCCCC----CCCCcccEEEecCCcccccC--chHHhcCCCccEEEccCCcCCc-cCCccccCccCCCeee
Q 038877           11 RISLMKTGIQSPSEI----PTCPRLVTFLLDGNWIEEIT--DGFFRSMSSLRVLSLRRNLALS-KLPSGISNLVSLHHLD   83 (298)
Q Consensus        11 ~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~   83 (298)
                      .+.+.++.|....+.    ..+++++++++.+|.++++.  .....++|.|++|+++.| .+. .+..--....+|+.|.
T Consensus        49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lV  127 (418)
T KOG2982|consen   49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLV  127 (418)
T ss_pred             hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEE
Confidence            455556666553322    67899999999999988433  234889999999999999 554 2211114678999999


Q ss_pred             ccCCccc--ccchhhcCCCcccEEeccCCccCCC-CchhhhcC-CCcccEEEeeccCCccccccccccccccCchhHHHh
Q 038877           84 LSWTRIR--GLPQELKALEKLRYLSLEGTRHLSI-IPHQLISG-FSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKE  159 (298)
Q Consensus        84 l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (298)
                      +.++.+.  .....+..+|.++.|.++.|+.-.- +...-+.. -+.+++++...|....             ......-
T Consensus       128 LNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~-------------w~~~~~l  194 (418)
T KOG2982|consen  128 LNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL-------------WLNKNKL  194 (418)
T ss_pred             EcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH-------------HHHHHhH
Confidence            9988655  5666788899999998888732110 00100111 2357777777765421             1122233


Q ss_pred             hcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCC-CCcccccccccccccceecccCCcce-eeecchhhh
Q 038877          160 LLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQS-PPLNVLHLAYMENLQELVILNSDLEE-MKIDSAEEV  237 (298)
Q Consensus       160 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~  237 (298)
                      -..++++..+.+..++..+...- +.....+.+.-|.++.+.. ......++.++|.|+.|.+.++.+.+ +.-..-   
T Consensus       195 ~r~Fpnv~sv~v~e~PlK~~s~e-k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~er---  270 (418)
T KOG2982|consen  195 SRIFPNVNSVFVCEGPLKTESSE-KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGER---  270 (418)
T ss_pred             HhhcccchheeeecCcccchhhc-ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcc---
Confidence            33468888888888765433321 2223334555667776665 34555678999999999999998876 321111   


Q ss_pred             hccccccCCcccEEecc
Q 038877          238 KKLFRSGFRSLNTVSVD  254 (298)
Q Consensus       238 ~~~~~~~~~~L~~L~l~  254 (298)
                      .++-...+++++.|+=+
T Consensus       271 r~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  271 RFLLIARLTKVQVLNGS  287 (418)
T ss_pred             eEEEEeeccceEEecCc
Confidence            11222456777766533

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.60  E-value=5.4e-09  Score=92.10  Aligned_cols=103  Identities=25%  Similarity=0.382  Sum_probs=48.2

Q ss_pred             ccCCCccEEEeecCCCcCCCC-CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877            4 EEWEGAKRISLMKTGIQSPSE-IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL   82 (298)
Q Consensus         4 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L   82 (298)
                      ..+.+|..+++.+|.+..+.. +..+++|++|++++|.|+.+..  +..+..|+.|++.+| .+..+.. +..+..|+.+
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~~l  167 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDISG-LESLKSLKLL  167 (414)
T ss_pred             ccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC-cchhccC-Cccchhhhcc
Confidence            334445555555555555444 4445555555555555544443  344444555555555 4443322 2334455555


Q ss_pred             eccCCcccccchh-hcCCCcccEEeccCC
Q 038877           83 DLSWTRIRGLPQE-LKALEKLRYLSLEGT  110 (298)
Q Consensus        83 ~l~~~~~~~l~~~-~~~l~~L~~L~l~~~  110 (298)
                      ++++|.+..+... ...+.+++.+.+.++
T Consensus       168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  168 DLSYNRIVDIENDELSELISLEELDLGGN  196 (414)
T ss_pred             cCCcchhhhhhhhhhhhccchHHHhccCC
Confidence            5555544433322 244444444444444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.60  E-value=3.4e-10  Score=100.97  Aligned_cols=175  Identities=18%  Similarity=0.183  Sum_probs=118.0

Q ss_pred             cccCCCccEEEeecCCCcCCCCCCC-CCcccEEEecCC--c--------ccccCchHHhcCCCccEEEccCCcCCccCCc
Q 038877            3 VEEWEGAKRISLMKTGIQSPSEIPT-CPRLVTFLLDGN--W--------IEEITDGFFRSMSSLRVLSLRRNLALSKLPS   71 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~--~--------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~   71 (298)
                      |..+..||+|-+.++++....++.. -.+|++|...+.  .        ++++..+  .....|.+.+.++| .+..+-.
T Consensus       105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns--~~Wn~L~~a~fsyN-~L~~mD~  181 (1096)
T KOG1859|consen  105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNS--PVWNKLATASFSYN-RLVLMDE  181 (1096)
T ss_pred             eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc--hhhhhHhhhhcchh-hHHhHHH
Confidence            5667788888888887766444422 234555543332  1        1122221  12345777777888 6766666


Q ss_pred             cccCccCCCeeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccccccccccc
Q 038877           72 GISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYD  151 (298)
Q Consensus        72 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  151 (298)
                      ++.-++.|+.|+|++|++.... .+..+++|++||+++| .+..+|.-...++. |..|.+++|.++             
T Consensus       182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l~-------------  245 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNALT-------------  245 (1096)
T ss_pred             HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecccHHH-------------
Confidence            7777888999999999888765 7788899999999988 56677753233444 888999888773             


Q ss_pred             CchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccC
Q 038877          152 DAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQ  201 (298)
Q Consensus       152 ~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  201 (298)
                          -...+.++++|+.||+++|-.....++...... ..|+.|++.+|+
T Consensus       246 ----tL~gie~LksL~~LDlsyNll~~hseL~pLwsL-s~L~~L~LeGNP  290 (1096)
T KOG1859|consen  246 ----TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSL-SSLIVLWLEGNP  290 (1096)
T ss_pred             ----hhhhHHhhhhhhccchhHhhhhcchhhhHHHHH-HHHHHHhhcCCc
Confidence                466777888889999988776655554444333 667888888886

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.55  E-value=5.7e-09  Score=91.92  Aligned_cols=128  Identities=29%  Similarity=0.322  Sum_probs=97.9

Q ss_pred             cCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeee
Q 038877            5 EWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLD   83 (298)
Q Consensus         5 ~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~   83 (298)
                      .+..++.+++..+.+..+. .+..+.+|+.|++.+|.+..+... +..+.+|++|++++| .++.+. ++..+..|+.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~  146 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELN  146 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-cccccc-chhhccchhhhe
Confidence            3556667777777777733 468889999999999988877664 678999999999999 888774 366777899999


Q ss_pred             ccCCcccccchhhcCCCcccEEeccCCccCCCCch-hhhcCCCcccEEEeeccCCc
Q 038877           84 LSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPH-QLISGFSKLEVLRLLWCGLW  138 (298)
Q Consensus        84 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~  138 (298)
                      +.+|.+..+. .+..++.|+.++++++.. ..+.. . ...+.+++.+.+.+|.+.
T Consensus       147 l~~N~i~~~~-~~~~l~~L~~l~l~~n~i-~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  147 LSGNLISDIS-GLESLKSLKLLDLSYNRI-VDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             eccCcchhcc-CCccchhhhcccCCcchh-hhhhhhh-hhhccchHHHhccCCchh
Confidence            9999888764 344588999999999843 44443 2 377888888888888763

>PLN03150 hypothetical protein; Provisional

Probab=98.52  E-value=3e-07  Score=84.92  Aligned_cols=82  Identities=24%  Similarity=0.376  Sum_probs=50.1

Q ss_pred             CCeeeccCCccc-ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHH
Q 038877           79 LHHLDLSWTRIR-GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLM  157 (298)
Q Consensus        79 L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  157 (298)
                      ++.|+|+++.+. .+|..++.+++|+.|++++|...+.+|.. ++.+++|+.|++++|.+               ...++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~l---------------sg~iP  483 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSF---------------NGSIP  483 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCC---------------CCCCc
Confidence            555666666555 55566666666666666666554555554 56666666666666666               33455


Q ss_pred             HhhcCCCCccEEEEEecCc
Q 038877          158 KELLGLKHLNVLSWSLHSS  176 (298)
Q Consensus       158 ~~l~~l~~L~~l~l~~~~~  176 (298)
                      ..+..+++|+.|+++.|..
T Consensus       484 ~~l~~L~~L~~L~Ls~N~l  502 (623)
T PLN03150        484 ESLGQLTSLRILNLNGNSL  502 (623)
T ss_pred             hHHhcCCCCCEEECcCCcc
Confidence            5666666666666666554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.28  E-value=8.3e-08  Score=68.69  Aligned_cols=107  Identities=18%  Similarity=0.266  Sum_probs=76.4

Q ss_pred             EEEeecCCCcCCCC----CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccC
Q 038877           11 RISLMKTGIQSPSE----IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSW   86 (298)
Q Consensus        11 ~L~l~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~   86 (298)
                      .++++.|++-.+++    +....+|...++++|.+.+.|+.+...++.++.+++..| .++.+|..+..++.|+.|+++.
T Consensus        31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~  109 (177)
T KOG4579|consen   31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRF  109 (177)
T ss_pred             hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccccc
Confidence            34555555444332    256667777888888887777776666778888888888 7888887788888888888888


Q ss_pred             CcccccchhhcCCCcccEEeccCCccCCCCchh
Q 038877           87 TRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQ  119 (298)
Q Consensus        87 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~  119 (298)
                      |.+...|+.+..+.++..|+..++ ....++..
T Consensus       110 N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d  141 (177)
T KOG4579|consen  110 NPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD  141 (177)
T ss_pred             CccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence            888877777777777888877766 34555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.25  E-value=2.9e-07  Score=85.19  Aligned_cols=107  Identities=27%  Similarity=0.324  Sum_probs=68.7

Q ss_pred             CCccEEEccCCcCCc-cCCccccC-ccCCCeeeccCCccc--ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCccc
Q 038877           53 SSLRVLSLRRNLALS-KLPSGISN-LVSLHHLDLSWTRIR--GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLE  128 (298)
Q Consensus        53 ~~L~~L~l~~~~~~~-~~p~~~~~-l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  128 (298)
                      .+|+.|++++..... ..|..++. +|.|+.|.+.+-.+.  ++.....+.++|..||++++ .++.+ .+ ++++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~G-IS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SG-ISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HH-HhccccHH
Confidence            567777777764333 22333333 677888877775443  44455667778888888877 34444 33 77788888


Q ss_pred             EEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCc
Q 038877          129 VLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSS  176 (298)
Q Consensus       129 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~  176 (298)
                      .|.+.+-.+.              .......+..+++|+.||+++...
T Consensus       199 ~L~mrnLe~e--------------~~~~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  199 VLSMRNLEFE--------------SYQDLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             HHhccCCCCC--------------chhhHHHHhcccCCCeeecccccc
Confidence            8877766653              234556677788888888877554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.22  E-value=2.6e-06  Score=65.19  Aligned_cols=125  Identities=19%  Similarity=0.249  Sum_probs=86.9

Q ss_pred             cEEEeecCCCcCCCCC-CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccC-ccCCCeeeccCC
Q 038877           10 KRISLMKTGIQSPSEI-PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISN-LVSLHHLDLSWT   87 (298)
Q Consensus        10 ~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~-l~~L~~L~l~~~   87 (298)
                      +.+++.+..+..+..+ ....+...++|++|.+..++.  +..++.|.+|.+++| .+..+.+.+.. +++|+.|.+.+|
T Consensus        22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             cccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecCc
Confidence            3455555555544444 345678888899888776655  778888999999998 88877554544 567899999988


Q ss_pred             cccccc--hhhcCCCcccEEeccCCccCC--CCchhhhcCCCcccEEEeeccCC
Q 038877           88 RIRGLP--QELKALEKLRYLSLEGTRHLS--IIPHQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus        88 ~~~~l~--~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~  137 (298)
                      .+.++.  ..+..+|+|+.|.+-+|....  ..-..++..+|+|+.||+.....
T Consensus        99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen   99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            887554  346778888888887763221  11223477899999999887654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.22  E-value=7.4e-07  Score=82.53  Aligned_cols=129  Identities=21%  Similarity=0.271  Sum_probs=86.6

Q ss_pred             CCccEEEeecCCCcC--CC-CC-CCCCcccEEEecCCccc-ccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCe
Q 038877            7 EGAKRISLMKTGIQS--PS-EI-PTCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHH   81 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~--~~-~~-~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~   81 (298)
                      .+|++|+++|...-.  .+ .+ ..+|.|+.|.+.+-.+. +-......++++|..||++++ .++.+ .+++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence            467888888754221  32 23 56888888888887554 222334677888888898888 78777 67888888888


Q ss_pred             eeccCCcccccc--hhhcCCCcccEEeccCCccCCCC--chhh---hcCCCcccEEEeeccCC
Q 038877           82 LDLSWTRIRGLP--QELKALEKLRYLSLEGTRHLSII--PHQL---ISGFSKLEVLRLLWCGL  137 (298)
Q Consensus        82 L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~--~~~~---~~~l~~L~~L~l~~~~~  137 (298)
                      |.+.+-.+....  ..+.++++|++||++.......-  ....   -..+|+||.||++++.+
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            888765555322  34677888888888876433221  1100   13488888888888777

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.19  E-value=1.9e-08  Score=90.17  Aligned_cols=127  Identities=21%  Similarity=0.229  Sum_probs=86.1

Q ss_pred             CCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCcc-ccCccCCCeee
Q 038877            6 WEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSLHHLD   83 (298)
Q Consensus         6 ~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~   83 (298)
                      |..|...++++|.+..+. .+.-++.++.|+|++|.+.++..  +..+++|++||+++| .+..+|.. ...| .|+.|+
T Consensus       163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~--Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~  238 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDN--LRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLN  238 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHH--HHhcccccccccccc-hhccccccchhhh-hheeee
Confidence            455666777777766654 33556788888888887776552  777888888888888 77777653 2223 388888


Q ss_pred             ccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCC
Q 038877           84 LSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus        84 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  137 (298)
                      +++|.++.+. ++.++.+|+.||+++|-..+.-.-..+..+..|+.|.+.||.+
T Consensus       239 lrnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  239 LRNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ecccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            8888777663 5677888888888887322211111256667778888888776

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.14  E-value=7.2e-07  Score=80.25  Aligned_cols=40  Identities=23%  Similarity=0.339  Sum_probs=27.5

Q ss_pred             ccEEeccCCCCCCchh--hhhh-cCCCcEEEeecCcccccccc
Q 038877          248 LNTVSVDYCQKAKDLT--WLVF-AQNLKELRIDSCYDVEEIIS  287 (298)
Q Consensus       248 L~~L~l~~c~~l~~l~--~l~~-~~~L~~L~l~~c~~l~~~~~  287 (298)
                      ++.|.+..|...++..  .... +..++.+++.+|+.+.....
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~  445 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL  445 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence            6888888886666532  2222 77888888888887776553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.12  E-value=3.8e-06  Score=48.48  Aligned_cols=14  Identities=50%  Similarity=0.536  Sum_probs=5.1

Q ss_pred             cCccCCCeeeccCC
Q 038877           74 SNLVSLHHLDLSWT   87 (298)
Q Consensus        74 ~~l~~L~~L~l~~~   87 (298)
                      +.+++|++|++++|
T Consensus        21 ~~l~~L~~L~l~~N   34 (44)
T PF12799_consen   21 SNLPNLETLNLSNN   34 (44)
T ss_dssp             TTCTTSSEEEETSS
T ss_pred             hCCCCCCEEEecCC
Confidence            33333333333333

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.12  E-value=4.5e-06  Score=63.91  Aligned_cols=106  Identities=25%  Similarity=0.284  Sum_probs=57.6

Q ss_pred             CCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhc-CCCcccEEeccCCccC--CCCchhhhcCCCcccE
Q 038877           53 SSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELK-ALEKLRYLSLEGTRHL--SIIPHQLISGFSKLEV  129 (298)
Q Consensus        53 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~--~~~~~~~~~~l~~L~~  129 (298)
                      .+...+|+++| .+..++ .+..++.|++|.+++|.++.+...+. .+++|+.|.+.+|+..  +++..  +..+|+|+.
T Consensus        42 d~~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p--La~~p~L~~  117 (233)
T KOG1644|consen   42 DQFDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP--LASCPKLEY  117 (233)
T ss_pred             cccceeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch--hccCCccce
Confidence            34555666666 555443 24556666677676666665544433 3445666666665322  22323  566666666


Q ss_pred             EEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEec
Q 038877          130 LRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLH  174 (298)
Q Consensus       130 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~  174 (298)
                      |.+-+|....            ....-.-.+..+++|+.||+..-
T Consensus       118 Ltll~Npv~~------------k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  118 LTLLGNPVEH------------KKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eeecCCchhc------------ccCceeEEEEecCcceEeehhhh
Confidence            6666665532            12222334445666666666653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.05  E-value=7e-06  Score=47.37  Aligned_cols=38  Identities=24%  Similarity=0.413  Sum_probs=19.9

Q ss_pred             cccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC
Q 038877           30 RLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL   69 (298)
Q Consensus        30 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~   69 (298)
                      +|++|++++|.+.++++. ++++++|++|++++| .++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N-~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPE-LSNLPNLETLNLSNN-PISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSS-CCSBE
T ss_pred             cceEEEccCCCCcccCch-HhCCCCCCEEEecCC-CCCCC
Confidence            455555555555555554 555566666666555 44433

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.98  E-value=3.6e-05  Score=66.35  Aligned_cols=81  Identities=17%  Similarity=0.288  Sum_probs=56.8

Q ss_pred             ccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCC-cccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877            4 EEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGN-WIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL   82 (298)
Q Consensus         4 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L   82 (298)
                      ..|.++++|++++|.+..+|.+  .++|++|.+.+| .+..+|.. +  .++|+.|++++|..+..+|..      |+.|
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L  117 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES------VRSL  117 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc------cceE
Confidence            4478899999999988888843  457999999987 55566654 3  357999999998666666643      5566


Q ss_pred             eccCCc---ccccchh
Q 038877           83 DLSWTR---IRGLPQE   95 (298)
Q Consensus        83 ~l~~~~---~~~l~~~   95 (298)
                      ++..+.   +..+|..
T Consensus       118 ~L~~n~~~~L~~LPss  133 (426)
T PRK15386        118 EIKGSATDSIKNVPNG  133 (426)
T ss_pred             EeCCCCCcccccCcch
Confidence            665543   3345543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.89  E-value=6.6e-05  Score=64.76  Aligned_cols=53  Identities=17%  Similarity=0.208  Sum_probs=21.8

Q ss_pred             CCCccEEEccCCcCCccCCccccCccCCCeeeccCC-cccccchhhcCCCcccEEeccCC
Q 038877           52 MSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWT-RIRGLPQELKALEKLRYLSLEGT  110 (298)
Q Consensus        52 ~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~-~~~~l~~~~~~l~~L~~L~l~~~  110 (298)
                      +.+++.|++++| .+..+|.   --.+|+.|.+++| .++.+|..+  .++|+.|++++|
T Consensus        51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            444444444444 4444441   1123444444443 333333322  124444444444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.88  E-value=4.2e-06  Score=75.31  Aligned_cols=133  Identities=25%  Similarity=0.150  Sum_probs=59.2

Q ss_pred             cCCCccEEEccCCcCCcc--CCccccCccCCCeeeccCC--cccc----cchhhcCCCcccEEeccCCccCCCCchhhh-
Q 038877           51 SMSSLRVLSLRRNLALSK--LPSGISNLVSLHHLDLSWT--RIRG----LPQELKALEKLRYLSLEGTRHLSIIPHQLI-  121 (298)
Q Consensus        51 ~~~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~--~~~~----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-  121 (298)
                      .++.|+.+.+..+..+..  +-.....+++|+.|+++++  ....    .......+++|+.++++.+..++...-..+ 
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            355566666655544443  2223344556666666542  1111    112233445566666665542322221112 


Q ss_pred             cCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEE
Q 038877          122 SGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVG  196 (298)
Q Consensus       122 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~  196 (298)
                      ..+++|+.|.+.+|...+             ...+......+++|+.++++.+.......+......+++++.|.
T Consensus       266 ~~c~~L~~L~l~~c~~lt-------------~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~  327 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLT-------------DEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK  327 (482)
T ss_pred             hhCCCcceEccCCCCccc-------------hhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence            235566666655444211             23344444455566666666555433333333333344444433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.86  E-value=1.8e-05  Score=63.56  Aligned_cols=240  Identities=15%  Similarity=0.142  Sum_probs=122.0

Q ss_pred             CCCccEEEeecCCCcC-----CC-CCCCCCcccEEEecCCccc----ccC------chHHhcCCCccEEEccCCcCCc-c
Q 038877            6 WEGAKRISLMKTGIQS-----PS-EIPTCPRLVTFLLDGNWIE----EIT------DGFFRSMSSLRVLSLRRNLALS-K   68 (298)
Q Consensus         6 ~~~L~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~~~~~----~~~------~~~~~~~~~L~~L~l~~~~~~~-~   68 (298)
                      +..+..++++||-|..     +. .+..-.+|+..+++.-..+    .++      ..++-+||+|+.++++.| .++ .
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Afg~~  107 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AFGSE  107 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-ccCcc
Confidence            5667777888877765     21 2244556666666654322    111      122556777777777777 443 3


Q ss_pred             CCc----cccCccCCCeeeccCCcccccc--------------hhhcCCCcccEEeccCCccCCCCchhh----hcCCCc
Q 038877           69 LPS----GISNLVSLHHLDLSWTRIRGLP--------------QELKALEKLRYLSLEGTRHLSIIPHQL----ISGFSK  126 (298)
Q Consensus        69 ~p~----~~~~l~~L~~L~l~~~~~~~l~--------------~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~l~~  126 (298)
                      .|+    .++.-..|.+|.+.+|.+..+.              .....-|.|+.+++..| .+...+...    +..-..
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~~a~~l~sh~~  186 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKELSAALLESHEN  186 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHHHHHHHHhhcC
Confidence            332    2445566777777777665332              11234566777777666 333333221    112245


Q ss_pred             ccEEEeeccCCccccccccccccccC-chhHHHhhcCCCCccEEEEEecCccchhh--hccccccccceeEEEEeccCCC
Q 038877          127 LEVLRLLWCGLWSRKEQEEGSVLYDD-AEPLMKELLGLKHLNVLSWSLHSSLAVQK--FLKYPKLLSITQSVGVYFCQSP  203 (298)
Q Consensus       127 L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~  203 (298)
                      |..+.+..|.+..           .+ ..-....+..+++|+.|+++.|.++....  +......-+.|+.|.+..|-..
T Consensus       187 lk~vki~qNgIrp-----------egv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         187 LKEVKIQQNGIRP-----------EGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             ceeEEeeecCcCc-----------chhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            6677777776632           00 11123445566777777777766533221  1111111123566666666543


Q ss_pred             Cccccc----cc--ccccccceecccCCcce-eeec-chhhhhccccccCCcccEEeccCCCCCCch
Q 038877          204 PLNVLH----LA--YMENLQELVILNSDLEE-MKID-SAEEVKKLFRSGFRSLNTVSVDYCQKAKDL  262 (298)
Q Consensus       204 ~~~~~~----l~--~l~~L~~L~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l  262 (298)
                      .....+    +.  ..|+|..|....|.... +... ++   ..+....+|-|..|.+.++ .++..
T Consensus       256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l---~~~e~~~~p~L~~le~ngN-r~~E~  318 (388)
T COG5238         256 NEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISL---NEFEQDAVPLLVDLERNGN-RIKEL  318 (388)
T ss_pred             cccHHHHHHHhhhhcCCCccccccchhhhcCceeeeech---hhhhhcccHHHHHHHHccC-cchhH
Confidence            222221    11  24677777776665544 1111 11   1122356677777777766 44443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.71  E-value=5.1e-06  Score=59.71  Aligned_cols=89  Identities=26%  Similarity=0.324  Sum_probs=77.8

Q ss_pred             cCCCccEEEeecCCCcCCC-CC-CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877            5 EWEGAKRISLMKTGIQSPS-EI-PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL   82 (298)
Q Consensus         5 ~~~~L~~L~l~~~~~~~~~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L   82 (298)
                      +-..|..+++++|.+.++| .+ ..++-+++|++.+|.+.++|.. +..++.|+.++++.| .+...|.-+..+.++-.|
T Consensus        51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDML  128 (177)
T ss_pred             CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHh
Confidence            4456788999999999987 34 6788999999999999999998 899999999999999 888888878889999999


Q ss_pred             eccCCcccccchh
Q 038877           83 DLSWTRIRGLPQE   95 (298)
Q Consensus        83 ~l~~~~~~~l~~~   95 (298)
                      +..+|...+++..
T Consensus       129 ds~~na~~eid~d  141 (177)
T KOG4579|consen  129 DSPENARAEIDVD  141 (177)
T ss_pred             cCCCCccccCcHH
Confidence            9999988877754

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.68  E-value=3e-05  Score=61.78  Aligned_cols=81  Identities=22%  Similarity=0.362  Sum_probs=35.3

Q ss_pred             CccEEEeecCCCcCCCCCCCCCcccEEEecCC--ccc-ccCchHHhcCCCccEEEccCCcCCccCC--ccccCccCCCee
Q 038877            8 GAKRISLMKTGIQSPSEIPTCPRLVTFLLDGN--WIE-EITDGFFRSMSSLRVLSLRRNLALSKLP--SGISNLVSLHHL   82 (298)
Q Consensus         8 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L   82 (298)
                      .|+.+++.+..++.+..+..+++|++|.++.|  .+. .+..- ...+++|+++++++| .+..+-  .....+.+|..|
T Consensus        44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSL  121 (260)
T ss_pred             chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC-ccccccccchhhhhcchhhh
Confidence            34444444444444444444555555555555  222 22222 333455555555555 443210  113334445555


Q ss_pred             eccCCccc
Q 038877           83 DLSWTRIR   90 (298)
Q Consensus        83 ~l~~~~~~   90 (298)
                      ++.+|..+
T Consensus       122 dl~n~~~~  129 (260)
T KOG2739|consen  122 DLFNCSVT  129 (260)
T ss_pred             hcccCCcc
Confidence            55554433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.58  E-value=0.00029  Score=51.22  Aligned_cols=117  Identities=18%  Similarity=0.333  Sum_probs=46.8

Q ss_pred             cccCCCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCC
Q 038877            3 VEEWEGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSL   79 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L   79 (298)
                      |.++.+|+.+.+.. .+..++  .+..+++|+.+.+..+ +..+...++..+++++.+.+..+  +..+ ...+..+.+|
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTE
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccc
Confidence            55566666666653 344433  2255666666666653 44555555666666666666543  2222 2345556666


Q ss_pred             CeeeccCCcccccch-hhcCCCcccEEeccCCccCCCCchhhhcCCCcc
Q 038877           80 HHLDLSWTRIRGLPQ-ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKL  127 (298)
Q Consensus        80 ~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L  127 (298)
                      +.+.+..+ +..++. .+..+ +++.+.+..+  ...++...+.++++|
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence            66666543 333332 24444 6666665542  344444445555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=7.5e-06  Score=65.82  Aligned_cols=77  Identities=30%  Similarity=0.316  Sum_probs=36.6

Q ss_pred             cccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccch--hhcCCCcccEEec
Q 038877           30 RLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQ--ELKALEKLRYLSL  107 (298)
Q Consensus        30 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l  107 (298)
                      +.+.|++.||.+.+|.-  ..+++.|++|.|+-| .++.+.+ +..|.+|++|+|..|.+..+.+  -+.++++|+.|.+
T Consensus        20 ~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHHHH--HHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            34444444554443322  344555555555555 4444422 3445555555555555444432  2445555555555


Q ss_pred             cCC
Q 038877          108 EGT  110 (298)
Q Consensus       108 ~~~  110 (298)
                      ..|
T Consensus        96 ~EN   98 (388)
T KOG2123|consen   96 DEN   98 (388)
T ss_pred             ccC
Confidence            444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=5.3e-06  Score=66.66  Aligned_cols=98  Identities=26%  Similarity=0.299  Sum_probs=78.9

Q ss_pred             CCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc--cccCccCCCeee
Q 038877            6 WEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS--GISNLVSLHHLD   83 (298)
Q Consensus         6 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~   83 (298)
                      +.+++.|++.|+.+.++.-...|+.|++|.|+-|.|+.+.+  +..|.+|+.|+|..| .+..+-+  -+.++++|+.|.
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence            45778899999999988777899999999999999987766  889999999999999 7765533  367889999999


Q ss_pred             ccCCccc-cc-c----hhhcCCCcccEEe
Q 038877           84 LSWTRIR-GL-P----QELKALEKLRYLS  106 (298)
Q Consensus        84 l~~~~~~-~l-~----~~~~~l~~L~~L~  106 (298)
                      |..|... .- +    ..+..+|+|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            9887543 21 1    3477888898887

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=1.9e-05  Score=60.59  Aligned_cols=87  Identities=17%  Similarity=0.201  Sum_probs=63.7

Q ss_pred             eeEEEEeccCCCCcccccccccccccceecccCCcce-eeecchhhhhccccccCCcccEEeccCCCCCCc--hhhhhhc
Q 038877          192 TQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE-MKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKD--LTWLVFA  268 (298)
Q Consensus       192 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~l~~~  268 (298)
                      ++.++-+++.+.......+..++.++.|.+..|+..+ -+++.+.       ..+++|+.|+|++|+.|++  +.++..+
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~-------~~~~~L~~L~lsgC~rIT~~GL~~L~~l  175 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLG-------GLAPSLQDLDLSGCPRITDGGLACLLKL  175 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhc-------ccccchheeeccCCCeechhHHHHHHHh
Confidence            4455555543333444457778888899999888877 5555552       3689999999999999998  4578889


Q ss_pred             CCCcEEEeecCcccccc
Q 038877          269 QNLKELRIDSCYDVEEI  285 (298)
Q Consensus       269 ~~L~~L~l~~c~~l~~~  285 (298)
                      ++|+.|.+.+.+.+...
T Consensus       176 knLr~L~l~~l~~v~~~  192 (221)
T KOG3864|consen  176 KNLRRLHLYDLPYVANL  192 (221)
T ss_pred             hhhHHHHhcCchhhhch
Confidence            99999999988776543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.81  E-value=0.0041  Score=45.10  Aligned_cols=102  Identities=17%  Similarity=0.316  Sum_probs=54.2

Q ss_pred             CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeeeccCCcccccc-hhhcCCCccc
Q 038877           26 PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLDLSWTRIRGLP-QELKALEKLR  103 (298)
Q Consensus        26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~  103 (298)
                      .++++|+.+.+.. .+..+....|..+.+|+.+.+..+  +..++ ..+..+.+++.+.+.. .+..++ ..+..+++|+
T Consensus         9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             hCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            5677788888774 455666666777878888887664  44443 3567777788888865 444333 3455677888


Q ss_pred             EEeccCCccCCCCchhhhcCCCcccEEEeec
Q 038877          104 YLSLEGTRHLSIIPHQLISGFSKLEVLRLLW  134 (298)
Q Consensus       104 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  134 (298)
                      .+.+..+  ...++...+.++ +|+.+.+..
T Consensus        85 ~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   85 NIDIPSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             EEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence            8887653  445555556676 777777654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.79  E-value=0.00056  Score=54.74  Aligned_cols=60  Identities=30%  Similarity=0.477  Sum_probs=25.2

Q ss_pred             ccCCCeeeccCC--ccc-ccchhhcCCCcccEEeccCCcc--CCCCchhhhcCCCcccEEEeeccCC
Q 038877           76 LVSLHHLDLSWT--RIR-GLPQELKALEKLRYLSLEGTRH--LSIIPHQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus        76 l~~L~~L~l~~~--~~~-~l~~~~~~l~~L~~L~l~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~  137 (298)
                      +++|+.|.++.|  .+. .++.....+++|+++++++|..  +++++.  +..+.+|..|++..|..
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLKSLDLFNCSV  128 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchhhhhcccCCc
Confidence            444555555544  222 3333333345555555555422  122222  34444445555554443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.73  E-value=0.0029  Score=48.88  Aligned_cols=61  Identities=15%  Similarity=0.097  Sum_probs=33.3

Q ss_pred             cccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccC
Q 038877          126 KLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQ  201 (298)
Q Consensus       126 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  201 (298)
                      .++.++.+++.+               ...-...+..++.++.+.+.+|.......+.......++|+.|++++|+
T Consensus       102 ~IeaVDAsds~I---------------~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~  162 (221)
T KOG3864|consen  102 KIEAVDASDSSI---------------MYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP  162 (221)
T ss_pred             eEEEEecCCchH---------------HHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence            366777777766               3344566666677777777666544333333333344444444444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.68  E-value=0.0054  Score=29.35  Aligned_cols=14  Identities=36%  Similarity=0.555  Sum_probs=5.4

Q ss_pred             CeeeccCCcccccc
Q 038877           80 HHLDLSWTRIRGLP   93 (298)
Q Consensus        80 ~~L~l~~~~~~~l~   93 (298)
                      ++|++++|.++.+|
T Consensus         3 ~~Ldls~n~l~~ip   16 (22)
T PF00560_consen    3 EYLDLSGNNLTSIP   16 (22)
T ss_dssp             SEEEETSSEESEEG
T ss_pred             cEEECCCCcCEeCC
Confidence            33444444333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.24  E-value=0.0079  Score=28.75  Aligned_cols=16  Identities=31%  Similarity=0.356  Sum_probs=7.3

Q ss_pred             ccEEEecCCcccccCc
Q 038877           31 LVTFLLDGNWIEEITD   46 (298)
Q Consensus        31 L~~L~l~~~~~~~~~~   46 (298)
                      |++|++++|.++.+|.
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            4444444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.47  E-value=0.027  Score=24.95  Aligned_cols=11  Identities=55%  Similarity=0.715  Sum_probs=3.3

Q ss_pred             CCeeeccCCcc
Q 038877           79 LHHLDLSWTRI   89 (298)
Q Consensus        79 L~~L~l~~~~~   89 (298)
                      |+.|++++|.+
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            34444444433

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=93.29  E-value=0.048  Score=27.17  Aligned_cols=18  Identities=28%  Similarity=0.678  Sum_probs=12.5

Q ss_pred             cCCCcEEEeecCcccccc
Q 038877          268 AQNLKELRIDSCYDVEEI  285 (298)
Q Consensus       268 ~~~L~~L~l~~c~~l~~~  285 (298)
                      +|+|++|+|.+|+.+++.
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            467777777777776654

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=92.28  E-value=0.097  Score=26.04  Aligned_cols=19  Identities=16%  Similarity=0.289  Sum_probs=16.8

Q ss_pred             CCcccEEeccCCCCCCchh
Q 038877          245 FRSLNTVSVDYCQKAKDLT  263 (298)
Q Consensus       245 ~~~L~~L~l~~c~~l~~l~  263 (298)
                      +++|++|++.+|+.+++..
T Consensus         1 c~~L~~L~l~~C~~itD~g   19 (26)
T smart00367        1 CPNLRELDLSGCTNITDEG   19 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHH
Confidence            4789999999999999864

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.82  E-value=0.0035  Score=56.05  Aligned_cols=17  Identities=35%  Similarity=0.389  Sum_probs=8.9

Q ss_pred             CCCCcccEEEecCCccc
Q 038877           26 PTCPRLVTFLLDGNWIE   42 (298)
Q Consensus        26 ~~~~~L~~L~l~~~~~~   42 (298)
                      ...+.|..|++++|.++
T Consensus       112 ~t~~~L~~L~l~~n~l~  128 (478)
T KOG4308|consen  112 KTLPTLGQLDLSGNNLG  128 (478)
T ss_pred             cccccHhHhhcccCCCc
Confidence            44455555555555444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.74  E-value=0.16  Score=25.15  Aligned_cols=18  Identities=22%  Similarity=0.338  Sum_probs=8.2

Q ss_pred             cccEEEecCCcccccCch
Q 038877           30 RLVTFLLDGNWIEEITDG   47 (298)
Q Consensus        30 ~L~~L~l~~~~~~~~~~~   47 (298)
                      +|+.|++.+|.+..+|..
T Consensus         3 ~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        3 NLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCEEECCCCcCCcCCHH
Confidence            444444444444444433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.74  E-value=0.16  Score=25.15  Aligned_cols=18  Identities=22%  Similarity=0.338  Sum_probs=8.2

Q ss_pred             cccEEEecCCcccccCch
Q 038877           30 RLVTFLLDGNWIEEITDG   47 (298)
Q Consensus        30 ~L~~L~l~~~~~~~~~~~   47 (298)
                      +|+.|++.+|.+..+|..
T Consensus         3 ~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        3 NLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCEEECCCCcCCcCCHH
Confidence            444444444444444433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.24  E-value=0.0086  Score=47.45  Aligned_cols=84  Identities=15%  Similarity=0.158  Sum_probs=51.4

Q ss_pred             CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEE
Q 038877           26 PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYL  105 (298)
Q Consensus        26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L  105 (298)
                      ..+.+.+.|+++.+.+-.+-.. |+.+..|..|+++.+ .+..+|.-++....+..+++..|..+..|.+.++.+.++++
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN  116 (326)
T ss_pred             hccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence            4555666666666654433333 455555666666666 66666666666666666666666666666666666666666


Q ss_pred             eccCCc
Q 038877          106 SLEGTR  111 (298)
Q Consensus       106 ~l~~~~  111 (298)
                      +...+.
T Consensus       117 e~k~~~  122 (326)
T KOG0473|consen  117 EQKKTE  122 (326)
T ss_pred             hhccCc
Confidence            666553

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.00  E-value=0.0075  Score=47.76  Aligned_cols=87  Identities=13%  Similarity=0.107  Sum_probs=72.2

Q ss_pred             CcccCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCC
Q 038877            2 KVEEWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH   80 (298)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~   80 (298)
                      +++.+.+.+.|+++.|....+. .++-++.+..|+++.+.+...|.+ ++....+..++...| ..+..|.+++..++++
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKN-NHSQQPKSQKKEPHPK  114 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhcc-chhhCCccccccCCcc
Confidence            3566778888888888766643 346678889999999998888888 788888888999888 8889999999999999


Q ss_pred             eeeccCCccc
Q 038877           81 HLDLSWTRIR   90 (298)
Q Consensus        81 ~L~l~~~~~~   90 (298)
                      ++++.++.+.
T Consensus       115 ~~e~k~~~~~  124 (326)
T KOG0473|consen  115 KNEQKKTEFF  124 (326)
T ss_pred             hhhhccCcch
Confidence            9999988654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=86.08  E-value=0.011  Score=53.07  Aligned_cols=106  Identities=25%  Similarity=0.345  Sum_probs=59.7

Q ss_pred             ccEEEecCCcccc----cCchHHhcCCCccEEEccCCcCCcc-----CCccccCc-cCCCeeeccCCccc-----ccchh
Q 038877           31 LVTFLLDGNWIEE----ITDGFFRSMSSLRVLSLRRNLALSK-----LPSGISNL-VSLHHLDLSWTRIR-----GLPQE   95 (298)
Q Consensus        31 L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~-----~p~~~~~l-~~L~~L~l~~~~~~-----~l~~~   95 (298)
                      +..+.+.+|.+..    .-...+.....|+.|++++| .+..     +...+... ..+++|++..|.++     .+.+.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            6777777776652    12233666777888888888 5541     11112221 44666666666555     34455


Q ss_pred             hcCCCcccEEeccCCccCCC----Cchhhhc----CCCcccEEEeeccCCc
Q 038877           96 LKALEKLRYLSLEGTRHLSI----IPHQLIS----GFSKLEVLRLLWCGLW  138 (298)
Q Consensus        96 ~~~l~~L~~L~l~~~~~~~~----~~~~~~~----~l~~L~~L~l~~~~~~  138 (298)
                      +.....++.++++.|.....    ++.. +.    ...++++|++.+|.++
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~-l~~~~~~~~~le~L~L~~~~~t  217 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQA-LESAASPLSSLETLKLSRCGVT  217 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhh-hhhhhcccccHHHHhhhhcCcC
Confidence            66666777777777644211    1111 22    3556777777777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	298
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-04

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.7 bits (179), Expect = 5e-15
 Identities = 31/129 (24%), Positives = 44/129 (34%), Gaps = 5/129 (3%)

Query: 8   GAKRISLMKTGIQS--PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLA 65
            ++RI L    I     +    C  L    L  N +  I    F  ++ L  L L  N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 66  LSKLPSGI-SNLVSLHHLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISG 123
           L  +       L  LH L L    ++ L     + L  L+YL L+    L  +P      
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRD 151

Query: 124 FSKLEVLRL 132
              L  L L
Sbjct: 152 LGNLTHLFL 160

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 4/106 (3%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWT 87
             L    L  N ++ + D  FR + +L  L L  N  +S +P      L SL  L L   
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQN 187

Query: 88  RIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           R+  +     + L +L  L L     LS +P + ++    L+ LRL
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRL 232

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 28  CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSW 86
              L    L GN I  + +  FR + SL  L L +N  ++ +      +L  L  L L  
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFA 210

Query: 87  TRIRGLPQE-LKALEKLRYLSLEG 109
             +  LP E L  L  L+YL L  
Sbjct: 211 NNLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 62  RNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQL 120
               L  +P GI    +   + L   RI  +P    +A   L  L L     L+ I    
Sbjct: 19  PQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAA 75

Query: 121 ISGFSKLEVLRL 132
            +G + LE L L
Sbjct: 76  FTGLALLEQLDL 87

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 73.6 bits (181), Expect = 7e-15
 Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 3/106 (2%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWT 87
             L    L  N I  I  G F  +++L  L L  N  L+ +P+G    L  L  L L   
Sbjct: 88  RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNN 146

Query: 88  RIRGLPQEL-KALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            I  +P      +  LR L L   + LS I      G S L  L L
Sbjct: 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 28  CPRLVT-FLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSW 86
            P L    L +   +  I++G F  +S+LR L+L     L ++P+ ++ L+ L  LDLS 
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN-LTPLIKLDELDLSG 216

Query: 87  TRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
             +  +     + L  L+ L +  ++ + +I          L  + L
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINL 262

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.9 bits (174), Expect = 5e-14
 Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 6/113 (5%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLH 80
           P  I          L  N I+ I    F+ +  L +L L RN  +  +  G  + L +L+
Sbjct: 59  PDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLN 115

Query: 81  HLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            L+L   R+  +P      L KL+ L L     +  IP    +    L  L L
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDL 167

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.2 bits (172), Expect = 9e-14
 Identities = 34/105 (32%), Positives = 45/105 (42%), Gaps = 3/105 (2%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWT 87
            +L    L  N IE I    F  + SLR L L     LS +  G    L +L +L+L+  
Sbjct: 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195

Query: 88  RIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            +R +P  L  L KL  L L G   LS I      G   L+ L +
Sbjct: 196 NLREIP-NLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWM 238

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.4 bits (170), Expect = 1e-13
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 7/107 (6%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLS-W 86
             L T  L  N +  I +G F  +S L+ L LR N  +  +PS   + + SL  LDL   
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGEL 170

Query: 87  TRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            R+  + +   + L  LRYL+L     L  IP+  ++   KL+ L L
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LTPLIKLDELDL 214

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.0 bits (156), Expect = 9e-12
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 6/107 (5%)

Query: 28  CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSW 86
              L    L    + EI +     +  L  L L  N  LS +  G    L+ L  L +  
Sbjct: 184 LSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQ 240

Query: 87  TRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           ++I+ + +     L+ L  ++L     L+++PH L +    LE + L
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHL 286

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.5 bits (134), Expect = 7e-09
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 23  SEIPT---CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVS 78
            EIP      +L    L GN +  I  G F+ +  L+ L + ++  +  +      NL S
Sbjct: 198 REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQS 256

Query: 79  LHHLDLSWTRIRGLPQE-LKALEKLRYLSLEG 109
           L  ++L+   +  LP +    L  L  + L  
Sbjct: 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLS-- 85
             L    +  + I+ I    F ++ SL  ++L  N  L+ LP  + + L  L  + L   
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHN 289

Query: 86  -WT---RIRGLPQELK 97
            W     I  L   +K
Sbjct: 290 PWNCNCDILWLSWWIK 305

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 73.6 bits (181), Expect = 7e-15
 Identities = 31/106 (29%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWT 87
             L    L  N I +I  G F  ++SL  L L  N  L+ +PSG    L  L  L L   
Sbjct: 99  HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNN 157

Query: 88  RIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            I  +P      +  L  L L   + L  I      G   L+ L L
Sbjct: 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.7 bits (176), Expect = 3e-14
 Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 10  KRISLMKTGIQS-PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSK 68
            ++   + G+   P  IP         L  N I+ I    FR +  L VL L RN  + +
Sbjct: 57  SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQ 113

Query: 69  LPSGI-SNLVSLHHLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSK 126
           +  G  + L SL+ L+L    +  +P    + L KLR L L     +  IP    +    
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPS 172

Query: 127 LEVLRL 132
           L  L L
Sbjct: 173 LMRLDL 178

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.5 bits (165), Expect = 6e-13
 Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 3/105 (2%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWT 87
            +L    L  N IE I    F  + SL  L L     L  +  G    L +L +L+L   
Sbjct: 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

Query: 88  RIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            I+ +P  L  L  L  L + G      I      G S L+ L +
Sbjct: 207 NIKDMP-NLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWV 249

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 6/106 (5%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSLHHLDLSWT 87
             L    L    I+++ +     +  L  L +  N    ++  G    L SL  L +  +
Sbjct: 196 FNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNS 252

Query: 88  RIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           ++  + +     L  L  L+L     LS +PH L +    L  L L
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.7 bits (137), Expect = 3e-09
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 23  SEIPT---CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVS 78
            ++P       L    + GN   EI  G F  +SSL+ L +  +  +S +       L S
Sbjct: 209 KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLAS 267

Query: 79  LHHLDLSWTRIRGLPQE-LKALEKLRYLSLEG 109
           L  L+L+   +  LP +    L  L  L L  
Sbjct: 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLS-- 85
             L    +  + +  I    F  ++SL  L+L  N  LS LP  + + L  L  L L   
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHN 300

Query: 86  -WT---RIRGLPQELK 97
            W     I  L   L+
Sbjct: 301 PWNCDCDILWLAWWLR 316

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 73.6 bits (181), Expect = 7e-15
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 6/127 (4%)

Query: 10  KRISLMKTGIQS--PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALS 67
           + + L K  I++    E  + P L    L+ N +  +  G F ++ +LR L LR N  L 
Sbjct: 35  RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LK 93

Query: 68  KLPSGI-SNLVSLHHLDLSWTRIRGLPQEL-KALEKLRYLSLEGTRHLSIIPHQLISGFS 125
            +P G+ + L +L  LD+S  +I  L   + + L  L+ L +     L  I H+  SG +
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLN 152

Query: 126 KLEVLRL 132
            LE L L
Sbjct: 153 SLEQLTL 159

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 2/105 (1%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTR 88
             L+   L    I  I D  F+ +  L+VL +     L  +       ++L  L ++   
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235

Query: 89  IRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           +  +P   ++ L  LR+L+L     +S I   ++    +L+ ++L
Sbjct: 236 LTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQL 279

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.5 bits (173), Expect = 6e-14
 Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLH 80
           P  IP         L  N I+ +    F S   L  L L  N  +S +  G  +NL +L 
Sbjct: 27  PEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLR 83

Query: 81  HLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            L L   R++ +P      L  L  L +   + + I+   +      L+ L +
Sbjct: 84  TLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEV 135

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 4/113 (3%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLH 80
                    L +  +    +  +     R +  LR L+L  N  +S +   +   L+ L 
Sbjct: 217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQ 275

Query: 81  HLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            + L   ++  +     + L  LR L++ G + L+ +   +      LE L L
Sbjct: 276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLIL 327

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWT 87
             L    L  N I  I       +  L+ + L     L+ +       L  L  L++S  
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN 306

Query: 88  RIRGLPQEL-KALEKLRYLSLEG 109
           ++  L + +  ++  L  L L+ 
Sbjct: 307 QLTTLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 28  CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLS 85
             RL    L G  +  +    FR ++ LRVL++  N  L+ L   +  ++ +L  L L 
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILD 328

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 5/114 (4%)

Query: 19  IQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVS 78
           +   + +   P LV   L  N +E+I    F  M  L  L +  N  L  L      + +
Sbjct: 238 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPT 296

Query: 79  LHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           L  LDLS   +  + +     ++L  L L+    +  +    +S    L+ L L
Sbjct: 297 LKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLK---LSTHHTLKNLTL 346

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.1 bits (159), Expect = 4e-12
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 4/106 (3%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWT 87
            ++    L+   IEEI    F    +++ L +  N  +  LP  +  N+  L  L L   
Sbjct: 69  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN 127

Query: 88  RIRGLPQEL-KALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            +  LP+ +     KL  LS+     L  I        + L+ L+L
Sbjct: 128 DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQL 172

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.9 bits (156), Expect = 9e-12
 Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 4/123 (3%)

Query: 12  ISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS 71
           I +    +    E  T           + + ++      S   + +L+L     + ++ +
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDT 86

Query: 72  GI-SNLVSLHHLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEV 129
              +   ++  L + +  IR LP    + +  L  L LE    LS +P  +     KL  
Sbjct: 87  YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTT 145

Query: 130 LRL 132
           L +
Sbjct: 146 LSM 148

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWT 87
             +    +  N I  +    F+++  L VL L RN  LS LP GI  N   L  L +S  
Sbjct: 93  HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN 151

Query: 88  RIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            +  +  +  +A   L+ L L   R L+ +    +S    L    +
Sbjct: 152 NLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANV 193

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 11/104 (10%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTR 88
           P+L T  +  N +E I D  F++ +SL+ L L  N  L+ +   +S + SL H ++S+  
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANVSYNL 197

Query: 89  IRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           +      L     +  L       ++++   +     +L +L+L
Sbjct: 198 L----STLAIPIAVEELDASHNS-INVVRGPV---NVELTILKL 233

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 22/130 (16%), Positives = 35/130 (26%), Gaps = 23/130 (17%)

Query: 23  SEIPTCPRLVTFLLDGNWIEEITDGFFRS-------------------MSSLRVLSLRRN 63
           S +     +       N I  +                             L  + L  N
Sbjct: 199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 258

Query: 64  LALSKLPSGI-SNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLIS 122
             L K+       +  L  L +S  R+  L    + +  L+ L L     L  +      
Sbjct: 259 -ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQ-P 315

Query: 123 GFSKLEVLRL 132
            F +LE L L
Sbjct: 316 QFDRLENLYL 325

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 14/113 (12%), Positives = 42/113 (37%), Gaps = 4/113 (3%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLH 80
            S +          +D    +        ++++ ++++ + +  + KLP+ +  +   + 
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVE 72

Query: 81  HLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            L+L+  +I  +          ++ L +     +  +P  +      L VL L
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVL 124

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 3/118 (2%)

Query: 17  TGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SN 75
             +   S   +  +L+   +     +   DG F  ++SL  L +  N       S + +N
Sbjct: 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471

Query: 76  LVSLHHLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
             +L  LDLS  ++  +       L +L+ L++     L  +     +    L  L  
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDC 528

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 25/114 (21%), Positives = 37/114 (32%), Gaps = 3/114 (2%)

Query: 21  SPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSL 79
                     L    L    IE I D  +  +  L  L L  N  +     G  S L SL
Sbjct: 48  KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSL 106

Query: 80  HHLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            +L    T++  L    +  L  L+ L++      S       S  + L  + L
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.7 bits (158), Expect = 7e-12
 Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 6/113 (5%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSLH 80
           P +IP         L  N ++ +    F + S L+ L L R   +  +       L  L 
Sbjct: 27  PDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLS 83

Query: 81  HLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           +L L+   I+         L  L  L    T  L+ +    I     L+ L +
Sbjct: 84  NLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNV 135

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.9 bits (143), Expect = 5e-10
 Identities = 27/114 (23%), Positives = 40/114 (35%), Gaps = 6/114 (5%)

Query: 27  TCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI---SNLVSLHHLD 83
             P L +  L  N           ++ SL  L L RN ALS             SL HLD
Sbjct: 326 DLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLD 382

Query: 84  LSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL 137
           LS+     +      LE+L++L  + +    +          KL  L + +   
Sbjct: 383 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 29/142 (20%)

Query: 21  SPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRN-LALSKLPSGISNLVSL 79
           SP        L   +     +  +       + +L+ L++  N +   KLP+  SNL +L
Sbjct: 96  SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155

Query: 80  HHLDLSWTRIRGLPQE---------------------LKALE-------KLRYLSLEGTR 111
            H+DLS+  I+ +                        +  ++       KL  L+L G  
Sbjct: 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF 215

Query: 112 HLSIIPHQLISGFSKLEVLRLL 133
           + S I    +   + L V RL+
Sbjct: 216 NSSNIMKTCLQNLAGLHVHRLI 237

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 10/117 (8%)

Query: 19  IQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVS 78
           I+   ++P   +  +  +    +++        +  L+ L+L  N     +      L S
Sbjct: 297 IKYLEDVPKHFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMN--KGSISFKKVALPS 351

Query: 79  LHHLDLSWTRIRGLPQ---ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           L +LDLS   +               LR+L L       I+      G  +L+ L  
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANF-MGLEELQHLDF 406

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 21  SPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSL 79
           S     T  RL    +  N +  +    +  + SL  L    N  +      +     SL
Sbjct: 489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSL 547

Query: 80  HHLDLS 85
              +L+
Sbjct: 548 AFFNLT 553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 4/118 (3%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRN-LALSKLPSGI-SNLVSL 79
           P+ IP         L+ N ++ +  G F  ++ L  LSL  N L+     S       SL
Sbjct: 23  PTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL 80

Query: 80  HHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL 137
            +LDLS+  +  +      LE+L +L  + +    +    +      L  L +     
Sbjct: 81  KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.9 bits (174), Expect = 6e-14
 Identities = 30/115 (26%), Positives = 43/115 (37%), Gaps = 4/115 (3%)

Query: 21  SPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSL 79
              ++  C  L   +L  + I  I    F S+ SL  L L  N  LS L S     L SL
Sbjct: 42  GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSL 100

Query: 80  HHLDLSWTRIRGLPQ--ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            +L+L     + L        L  L+ L +      S I     +G + L  L +
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.1 bits (159), Expect = 5e-12
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 5/113 (4%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLH 80
           PS +     + +  L  N I  I  G  R+ ++L+VL L+ +  ++ +      +L SL 
Sbjct: 21  PSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLE 77

Query: 81  HLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           HLDLS   +  L       L  L+YL+L G  + ++    L    + L+ LR+
Sbjct: 78  HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.4 bits (144), Expect = 4e-10
 Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 10/121 (8%)

Query: 14  LMKTGIQSPSEIPTCPRLVTFLLDGNWIEEI--TDGFFRSMSSLRVLSLRRNLALSKLPS 71
           +++  +++ +     P L T +L  N +  +  T     ++ +L  L + RN     +P 
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPD 404

Query: 72  GISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLR 131
                  +  L+LS T IR +   +   + L  L +     L      L     +L+ L 
Sbjct: 405 SCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNN-LDSFSLFL----PRLQELY 457

Query: 132 L 132
           +
Sbjct: 458 I 458

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 16/115 (13%), Positives = 40/115 (34%), Gaps = 3/115 (2%)

Query: 21  SPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH 80
           S  E   C        + +  + +++       ++R L + +      L +  S L  + 
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

Query: 81  HLDLSWTRIRGLPQE-LKALEKLRYLSLEGTR--HLSIIPHQLISGFSKLEVLRL 132
            + +  +++  +P    + L+ L +L L         +        +  L+ L L
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 38/284 (13%), Positives = 89/284 (31%), Gaps = 44/284 (15%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWT 87
             L    +    +        +S+  +  L+L  +   + L       L S+ +L+L  T
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDT 206

Query: 88  RIRGLPQE----LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ 143
            +           +    ++ L+  G+       ++L+     +  L  +     +    
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266

Query: 144 EEGSVLYDDA--EPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSIT------QSV 195
            + +    D   E    E + ++ L++  + L   L+   +    K+  IT        V
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV-YSLLEKVKRITVENSKVFLV 325

Query: 196 GVYFCQSPP-LNVLHLAY----------------MENLQELVILNSDLEEMKIDSAEEVK 238
              F Q    L  L L+                   +LQ L      L +  + S ++  
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL-----VLSQNHLRSMQKTG 380

Query: 239 KLFRSGFRSLNTVSVDYCQ---KAKDLTWLVFAQNLKELRIDSC 279
           ++     ++L ++ +             W    + ++ L + S 
Sbjct: 381 EIL-LTLKNLTSLDISRNTFHPMPDSCQWP---EKMRFLNLSST 420

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 23  SEIPTC--PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH 80
             + TC    L    +  N ++  +      +  L+ L + RN  L  LP   S    L 
Sbjct: 423 RVVKTCIPQTLEVLDVSNNNLDSFSLF----LPRLQELYISRNK-LKTLPDA-SLFPVLL 476

Query: 81  HLDLSWTRIRGLPQE-LKALEKLRYLSLEG 109
            + +S  +++ +P      L  L+ + L  
Sbjct: 477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.7 bits (173), Expect = 7e-14
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 5/114 (4%)

Query: 19  IQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVS 78
           +   + +   P LV   L  N +E+I    F  M  L  L +  N  L  L      + +
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPT 302

Query: 79  LHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           L  LDLS   +  + +     ++L  L L+    +  +    +S    L+ L L
Sbjct: 303 LKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLK---LSTHHTLKNLTL 352

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.2 bits (156), Expect = 1e-11
 Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 4/123 (3%)

Query: 12  ISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS 71
           I +    +    E  T           + + ++      S   + +L+L     + ++ +
Sbjct: 34  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDT 92

Query: 72  GI-SNLVSLHHLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEV 129
              +   ++  L + +  IR LP    + +  L  L LE    LS +P  +     KL  
Sbjct: 93  YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTT 151

Query: 130 LRL 132
           L +
Sbjct: 152 LSM 154

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.6 bits (152), Expect = 3e-11
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 4/106 (3%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWT 87
            ++    L+   IEEI    F    +++ L +  N  +  LP  +  N+  L  L L   
Sbjct: 75  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN 133

Query: 88  RIRGLPQEL-KALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            +  LP+ +     KL  LS+     L  I        + L+ L+L
Sbjct: 134 DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQL 178

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.1 bits (148), Expect = 9e-11
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWT 87
             +    +  N I  +    F+++  L VL L RN  LS LP GI  N   L  L +S  
Sbjct: 99  HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN 157

Query: 88  RIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            +  +  +  +A   L+ L L   R L+ +    +S    L    +
Sbjct: 158 NLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANV 199

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 22/130 (16%), Positives = 36/130 (27%), Gaps = 23/130 (17%)

Query: 23  SEIPTCPRLVTFLLDGNWIEEITDGFFRS-------------------MSSLRVLSLRRN 63
           S +     +       N I  +                             L  + L  N
Sbjct: 205 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 264

Query: 64  LALSKLPSGI-SNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLIS 122
             L K+       +  L  L +S  R+  L    + +  L+ L L     L +   +   
Sbjct: 265 -ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV--ERNQP 321

Query: 123 GFSKLEVLRL 132
            F +LE L L
Sbjct: 322 QFDRLENLYL 331

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 11/104 (10%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTR 88
           P+L T  +  N +E I D  F++ +SL+ L L  N  L+ +   +S + SL H ++S+  
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANVSYNL 203

Query: 89  IRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           +      L     +  L       ++++   +     +L +L+L
Sbjct: 204 L----STLAIPIAVEELDASHNS-INVVRGPV---NVELTILKL 239

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 14/113 (12%), Positives = 42/113 (37%), Gaps = 4/113 (3%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLH 80
            S +          +D    +        ++++ ++++ + +  + KLP+ +  +   + 
Sbjct: 20  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVE 78

Query: 81  HLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            L+L+  +I  +          ++ L +     +  +P  +      L VL L
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVL 130

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 18/121 (14%), Positives = 32/121 (26%), Gaps = 21/121 (17%)

Query: 28  CPRLVTFLLDGNWIEEITDGFFRS----------------MSSLRVLSLRRNLALSKLPS 71
              L    L  N +  +      S                  ++  L    N +++ +  
Sbjct: 170 TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN-SINVVRG 228

Query: 72  GISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLR 131
            +   V L  L L    +      L     L  + L     L  I +       +LE L 
Sbjct: 229 PV--NVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLY 284

Query: 132 L 132
           +
Sbjct: 285 I 285

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.1 bits (169), Expect = 1e-13
 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWT 87
             L + LL  N +  I+   F  + +LR L L  N  L  L   + S+L +L  L L   
Sbjct: 64  TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNN 122

Query: 88  RIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLW 134
            I  + +   + + +L+ L L   + +S  P +LI   +KL  L LL 
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLD 169

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.2 bits (164), Expect = 8e-13
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 10/116 (8%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEI-TDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSL 79
           P  +P         L  N +  +  +     +++L  L L  N  L+ + S     + +L
Sbjct: 34  PQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNL 90

Query: 80  HHLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLW 134
            +LDLS   +  L +     L+ L  L L    H+ ++       F  +  L+ L+
Sbjct: 91  RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNA---FEDMAQLQKLY 142

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.5 bits (157), Expect = 5e-12
 Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 7/110 (6%)

Query: 28  CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSW 86
            P L    L  N +  + +  F  + +L VL L  N  +  +      ++  L  L LS 
Sbjct: 87  VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQ 145

Query: 87  TRIRGLPQE----LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            +I   P E       L KL  L L   + L  +P   +          L
Sbjct: 146 NQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGL 194

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.9 bits (171), Expect = 1e-13
 Identities = 35/222 (15%), Positives = 70/222 (31%), Gaps = 41/222 (18%)

Query: 19  IQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS--GISNL 76
           ++      T  +L    LD N IEEI + F      +  L    N  L  +P+     ++
Sbjct: 585 VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSV 643

Query: 77  VSLHHLDLSWTRIRGLPQEL------KALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVL 130
             +  +D S+ +I    + +              ++L     +   P +L +  S +  +
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTI 702

Query: 131 RLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLS 190
            L    +         S+  +  +P          L  +             L++ KL S
Sbjct: 703 ILSNNLM--------TSIPENSLKPKDGNYKNTYLLTTID------------LRFNKLTS 742

Query: 191 ITQSVGVYFCQSPPLNVLHLAY---------MENLQELVILN 223
           +  S        P L+ + ++Y           N  +L    
Sbjct: 743 L--SDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFG 782

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.3 bits (159), Expect = 6e-12
 Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 17/126 (13%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEI-------TDGFFRSMSSLRVLSLRRNLALSKLPSGI- 73
                T   + T +L  N +  I        DG +++   L  + LR N  L+ L     
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFR 748

Query: 74  -SNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLS------IIPHQLISGFSK 126
            + L  L ++D+S+      P +     +L+   +   R           P   I+    
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG-ITTCPS 807

Query: 127 LEVLRL 132
           L  L++
Sbjct: 808 LIQLQI 813

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 11/132 (8%)

Query: 11  RISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNL------ 64
           +I      I    +        T  L  N I++     F + S +  + L  NL      
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714

Query: 65  -ALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKA--LEKLRYLSLEGTRHLSIIPHQLI 121
            +L        N   L  +DL + ++  L  + +A  L  L  + +      S  P Q  
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQ-P 772

Query: 122 SGFSKLEVLRLL 133
              S+L+   + 
Sbjct: 773 LNSSQLKAFGIR 784

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.8 bits (150), Expect = 7e-11
 Identities = 15/120 (12%), Positives = 35/120 (29%), Gaps = 10/120 (8%)

Query: 23  SEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL 82
           +             D     E  +  + ++  L  + L     +++LP  + +L  L  L
Sbjct: 461 TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

Query: 83  DLSWTRIRG----------LPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           +++  R             L  +     K++   +             +    KL +L  
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC 580

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.3 bits (146), Expect = 2e-10
 Identities = 12/119 (10%), Positives = 37/119 (31%), Gaps = 7/119 (5%)

Query: 17  TGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SN 75
               + + +    +L       N +  +    F +   L  L L  N  + ++P    + 
Sbjct: 561 EEFPASASLQKMVKLGLLDCVHNKVRHLEA--FGTNVKLTDLKLDYNQ-IEEIPEDFCAF 617

Query: 76  LVSLHHLDLSWTRIRGLPQ--ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
              +  L  S  +++ +P     K++  +  +     + +      +       + +  
Sbjct: 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINA 675

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.5 bits (144), Expect = 4e-10
 Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 10/123 (8%)

Query: 17  TGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALS------KLP 70
           T +       T P L    +  N           + S L+   +R            + P
Sbjct: 741 TSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL-NSSQLKAFGIRHQRDAEGNRILRQWP 799

Query: 71  SGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVL 130
           +GI+   SL  L +    IR + ++L    +L  L +        I    +  + +  + 
Sbjct: 800 TGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADN-PNISIDVTSVCPYIEAGMY 856

Query: 131 RLL 133
            LL
Sbjct: 857 VLL 859

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 4e-08
 Identities = 17/131 (12%), Positives = 40/131 (30%), Gaps = 17/131 (12%)

Query: 17  TGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMS-----SLRVLSLRRNLALSKLPS 71
             I +     +   + +     N I         SM      +   ++L  N  + K P+
Sbjct: 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPT 690

Query: 72  GI-SNLVSLHHLDLSWTRIRGLPQE--------LKALEKLRYLSLEGTRHLSIIPHQL-I 121
            + +    +  + LS   +  +P+          K    L  + L   + L+ +      
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRA 749

Query: 122 SGFSKLEVLRL 132
           +    L  + +
Sbjct: 750 TTLPYLSNMDV 760

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 21/213 (9%), Positives = 52/213 (24%), Gaps = 34/213 (15%)

Query: 19  IQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVS 78
                +     +        N I  I+    R ++ L+++    +            +  
Sbjct: 415 KPIKKDSRISLKDTQIGNLTNRITFISKAIQR-LTKLQIIYFANS----PFTYDNIAVDW 469

Query: 79  LHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLW 138
                    +          L+ L  + L    +++ +P   +    +L+ L +      
Sbjct: 470 EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNI------ 522

Query: 139 SRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVY 198
           +       + L  D   L  +      + +              + Y  L     S    
Sbjct: 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFY------------MGYNNLEEFPASAS-- 568

Query: 199 FCQSPPLNVLHLAY--------MENLQELVILN 223
             +   L +L   +             +L  L 
Sbjct: 569 LQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLK 601

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 15/108 (13%), Positives = 27/108 (25%), Gaps = 1/108 (0%)

Query: 33  TFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGL 92
            F  + +   +       +   +  LSL    A  ++P  I  L  L  L          
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 93  PQELKALE-KLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWS 139
            +     E           R         +    +L +  LL   +  
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 4/114 (3%)

Query: 21  SPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSL 79
             +      +L +  +  N I ++     + +  L+VL+L+ N  LS+L     +   +L
Sbjct: 41  PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNL 99

Query: 80  HHLDLSWTRIRGL-PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
             L L    I+ +        + L  L L     LS            L+ L L
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLL 152

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.3 bits (165), Expect = 8e-13
 Identities = 28/120 (23%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSLH 80
           P ++PT   +    L  N +  +    F   S L  L +  N  +SKL       L  L 
Sbjct: 20  PDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLK 76

Query: 81  HLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWS 139
            L+L    +  L  +       L  L L     +  I +        L  L L   GL S
Sbjct: 77  VLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSS 135

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 30/116 (25%), Positives = 41/116 (35%), Gaps = 6/116 (5%)

Query: 21  SPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSL 79
           S      C  L    L  N I++I +  F    +L  L L  N  LS    G    L +L
Sbjct: 89  SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENL 147

Query: 80  HHLDLSWTRIRGLPQE---LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
             L LS  +I+ L  E   + A   L+ L L     +            +L  L L
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFL 202

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 5/116 (4%)

Query: 21  SPSEIPTCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSL 79
                     L    L  N I  E+T   +R + ++  + L  N  L    +  + + SL
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456

Query: 80  HHLDLSWTRIRGL---PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
             L L    ++ +   P   + L  L  L L    +++ I   ++ G  KLE+L L
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDL 511

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 13/125 (10%)

Query: 21  SPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL---------PS 71
                   P+L  F L+ N I+ +       + ++R L+L+R+     +           
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 72  GISNLVSLHHLDLSWTRIRGLPQE-LKALEKLRYLSLEGTR--HLSIIPHQLIS-GFSKL 127
               L  L HL++    I G+       L  L+YLSL  +     ++     +S   S L
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

Query: 128 EVLRL 132
            +L L
Sbjct: 384 HILNL 388

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 4/103 (3%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
            R+            +     L    L+ N  +EI    F+ +  L+++ L  N  L+ L
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN-LNTL 575

Query: 70  PSGI-SNLVSLHHLDLSWTRIRGLPQEL--KALEKLRYLSLEG 109
           P+ + +N VSL  L+L    I  + +++   A   L  L +  
Sbjct: 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 5/115 (4%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSLH 80
           PS +     L   +L  N  E +      +  SL  LS++ N    +L +G + NL +L 
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353

Query: 81  HLDLSWTRIRGLP---QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            LDLS   I        +L+ L  L+ L+L        +  +      +LE+L L
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDL 407

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.7 bits (166), Expect = 6e-13
 Identities = 28/114 (24%), Positives = 37/114 (32%), Gaps = 4/114 (3%)

Query: 21  SPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSL 79
             +       L    L    I  I +  F+S   L  L L  N  L  +     S   +L
Sbjct: 49  QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKAL 107

Query: 80  HHLDLSWTRIRGL-PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            HL    T I  +    L   + L  L L    H+S I         KL+VL  
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGS-NHISSIKLPKGFPTEKLKVLDF 160

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.3 bits (157), Expect = 9e-12
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 6/114 (5%)

Query: 23  SEIPTC-PRLVTFL-LDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSL 79
           +EIP   P     L    N +  I +  F  + +L  L L R   +  +      +   L
Sbjct: 25  NEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRL 83

Query: 80  HHLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
             L L+   +  + +  L   + L++L    T  +S I    +     LE L L
Sbjct: 84  DTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYL 136

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 4/116 (3%)

Query: 21  SPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRN-LALSKLPSGISNLVSL 79
              ++     L +  L  N    +    F+    L +L L    L +    S   NL  L
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 80  HHLDLSWTRIRGLPQE-LKALEKLRYLSLEGTR--HLSIIPHQLISGFSKLEVLRL 132
             L+LS + +    ++    L  L++L+L+G      +I     +    +LE+L L
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 8/120 (6%)

Query: 17  TGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNL---ALSKLPSGI 73
               + S       L    L  + ++  ++  F  + +L+ L+L+ N       +  + +
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472

Query: 74  SNLVSLHHLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
             L  L  L LS+  +  + Q    +L+ + ++ L   R L+    +     S L+ + L
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR-LTSSSIEA---LSHLKGIYL 528

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 30/116 (25%), Positives = 41/116 (35%), Gaps = 6/116 (5%)

Query: 21  SPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSL 79
           S +       L    L    + E+  G    +S+L+ L L  N     L     SN  SL
Sbjct: 270 SSNTFHCFSGLQELDLTATHLSELPSGLV-GLSTLKKLVLSANK-FENLCQISASNFPSL 327

Query: 80  HHLDLSWTRIRGL--PQELKALEKLRYLSLEGTR-HLSIIPHQLISGFSKLEVLRL 132
            HL +     R       L+ LE LR L L       S   +  +   S L+ L L
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 5/108 (4%)

Query: 28  CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSLHHLDLSW 86
              L         I  I      +  +L  L L  N  +S +          L  LD   
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQN 162

Query: 87  TRIRGL-PQELKALEKLRYLSLEGTR-HLSIIPHQLISGFSKLEVLRL 132
             I  L  +++ +L++   LSL      ++ I        +  + L  
Sbjct: 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNF 209

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 21  SPSEIPTCPRLVTFLLDGN---WIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNL 76
           S       P L    L GN             +++  L +L L     LS +     ++L
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSL 499

Query: 77  VSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
             ++H+DLS  R+     E  +  K  YL+L    H+SII   L+   S+   + L
Sbjct: 500 KMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASN-HISIILPSLLPILSQQRTINL 554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 10  KRISLMKTGIQS--PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALS 67
           K +  ++TGI S     +     L +  L  N I  I          L+VL  + N A+ 
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIH 166

Query: 68  KLPSG-ISNLVSLHH--LDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLI-SG 123
            L    +S+L    +  L+L+   I G+          + L+  GT++L +I   L  S 
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226

Query: 124 FSKLEVLRLL 133
              L +    
Sbjct: 227 IQSLWLGTFE 236

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 2/98 (2%)

Query: 13  SLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG 72
              K  IQ  + + T  RL   +L    +  I    F S+  +  + L  N  L+     
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIE 518

Query: 73  ISNLVSLHHLDLSWTRIRGLPQE-LKALEKLRYLSLEG 109
             + +   +L+L+   I  +    L  L + R ++L  
Sbjct: 519 ALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQ 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.1 bits (167), Expect = 5e-13
 Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 3/113 (2%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSLH 80
                + P L    L    I+ I DG ++S+S L  L L  N  +  L  G  S L SL 
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQ 103

Query: 81  HLDLSWTRIRGL-PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            L    T +  L    +  L+ L+ L++      S    +  S  + LE L L
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 3/118 (2%)

Query: 17  TGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRN-LALSKLPSGISN 75
             +   S   +   L+   +         +G F  +SSL VL +  N    + LP   + 
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 76  LVSLHHLDLSWTRIRGL-PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           L +L  LDLS  ++  L P    +L  L+ L++        +        + L+VL  
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDY 525

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.4 bits (152), Expect = 4e-11
 Identities = 46/265 (17%), Positives = 97/265 (36%), Gaps = 26/265 (9%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSLH 80
                +   L T +L GN I+ +  G F  +SSL+ L       L+ L +  I +L +L 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLK 127

Query: 81  HLDLSWTRIRGL--PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEV----LRLLW 134
            L+++   I+    P+    L  L +L L   + +  I    +    ++ +    L L  
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 135 CGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQS 194
             +                +P   + + L  L  L  +  S   ++  ++    L + + 
Sbjct: 187 NPMNF-------------IQPGAFKEIRLHKLT-LRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 195 VGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVD 254
           V   F     L     + +E L  L I    L  +     +++  LF +   ++++ S+ 
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY-YLDDIIDLF-NCLTNVSSFSLV 290

Query: 255 YCQKAKDLTWLVFAQNLKELRIDSC 279
                + +    +    + L + +C
Sbjct: 291 SVT-IERVKDFSYNFGWQHLELVNC 314

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.4 bits (152), Expect = 4e-11
 Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 2/112 (1%)

Query: 23  SEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRN--LALSKLPSGISNLVSLH 80
            + PT        L     +         + SL  L L RN                SL 
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 81  HLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           +LDLS+  +  +      LE+L +L  + +    +    +      L  L +
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 2/87 (2%)

Query: 52  MSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGL-PQELKALEKLRYLSLEGT 110
             S + L L  N           +   L  LDLS   I+ +     ++L  L  L L G 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 111 RHLSIIPHQLISGFSKLEVLRLLWCGL 137
              S+      SG S L+ L  +   L
Sbjct: 87  PIQSLALG-AFSGLSSLQKLVAVETNL 112

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 4/96 (4%)

Query: 17  TGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISN 75
                P        L    L    +E+++   F S+SSL+VL++  N     L +     
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKC 516

Query: 76  LVSLHHLDLSWTRIRGLPQEL--KALEKLRYLSLEG 109
           L SL  LD S   I    ++        L +L+L  
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 10/126 (7%)

Query: 17  TGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLA---LSKLPSGI 73
              + P        L    L  N I+ I     R +  + +L+L  +L+   ++ +  G 
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 74  SNLVSLHHLDLSWTRIRG--LPQELKALEKLRYLSL-----EGTRHLSIIPHQLISGFSK 126
              + LH L L         +   ++ L  L    L         +L       + G   
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 127 LEVLRL 132
           L +   
Sbjct: 257 LTIEEF 262

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 67.3 bits (165), Expect = 5e-13
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 7/110 (6%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWT 87
           P L    LDGN I ++     + +++L  L L  N  +S + +G  +N   L  L L+  
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN 250

Query: 88  RIRGLPQELKALEKLRYLSLEGTR-----HLSIIPHQLISGFSKLEVLRL 132
           ++  +P  L   + ++ + L              P    +  +    + L
Sbjct: 251 KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 7/107 (6%)

Query: 29  PRLVTFLLDGNWIEE--ITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSW 86
            +++   L  N ++   I +G F+ M  L  + +     ++ +P G+    SL  L L  
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGL--PPSLTELHLDG 201

Query: 87  TRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            +I  +    LK L  L  L L     +S + +  ++    L  L L
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHL 247

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 8/107 (7%)

Query: 28  CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSW 86
             +L    +    I  I  G      SL  L L  N  ++K+ +     L +L  L LS+
Sbjct: 170 MKKLSYIRIADTNITTIPQGLP---PSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSF 225

Query: 87  TRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
             I  +    L     LR L L   + L  +P  L +    ++V+ L
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGL-ADHKYIQVVYL 270

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTR 88
             L T +L  N I +I+ G F  +  L  L L +N  L +LP  +    +L  L +    
Sbjct: 76  KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM--PKTLQELRVHENE 132

Query: 89  IRGLPQE-LKALEKLRYLSLEGTR-HLSIIPHQLISGFSKLEVLRL 132
           I  + +     L ++  + L       S I +    G  KL  +R+
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 8/72 (11%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFR------SMSSLRVLSLRRN-LALSKLPSGI- 73
           P  +     +    L  N I  I    F         +S   +SL  N +   ++     
Sbjct: 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315

Query: 74  SNLVSLHHLDLS 85
             +     + L 
Sbjct: 316 RCVYVRAAVQLG 327

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.2 bits (162), Expect = 5e-13
 Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 23  SEIPTCPRLVTFL-LDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLH 80
             IP+ P     L L    +  I    F ++ ++  + +  ++ L +L S    NL  + 
Sbjct: 24  QRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT 83

Query: 81  HLDLSWTR-IRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLW 134
           H+++  TR +  +  + LK L  L++L +  T  L + P   ++     ++  +L 
Sbjct: 84  HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD--LTKVYSTDIFFILE 136

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.2 bits (131), Expect = 7e-09
 Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 4/109 (3%)

Query: 28  CPRLVTFLLDGNWIEEITDG-FFRSMSSLRVLSLRRNLALSKLPSGI-SNLVS-LHHLDL 84
            P L    +    ++   D     S     +L +  N  ++ +P      L +    L L
Sbjct: 104 LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163

Query: 85  SWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISG-FSKLEVLRL 132
                  +        KL  + L   ++L++I      G +S   +L +
Sbjct: 164 YNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 28  CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVS-LHHLDLS 85
           C   +T  L  N    +    F   + L  + L +N  L+ +       + S    LD+S
Sbjct: 155 CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213

Query: 86  WTRIRGLPQE-LKALEKLRYLSL 107
            T +  LP + L+ L++L   + 
Sbjct: 214 QTSVTALPSKGLEHLKELIARNT 236

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.5 bits (165), Expect = 8e-13
 Identities = 39/195 (20%), Positives = 71/195 (36%), Gaps = 15/195 (7%)

Query: 31  LVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWTRI 89
           +    L   ++  +    F ++  L+VL+L  N  ++K+       L +L  L+LS+  +
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNLSYNLL 326

Query: 90  RGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSV 148
             L       L K+ Y+ L+   H++II  Q      KL+ L L    L +         
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385

Query: 149 LYDDAEPLM---KELLGLKHLNVLSWSLHSSLAVQKFLKYPKLL-------SITQSVGVY 198
           ++     L+   K  L    +++    L +   +   L+ P L          +   G  
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

Query: 199 FCQSPP-LNVLHLAY 212
                P L  L L  
Sbjct: 446 TPSENPSLEQLFLGE 460

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.8 bits (158), Expect = 7e-12
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 4/114 (3%)

Query: 23  SEIPTCPRLVTFL-LDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLH 80
           +++P        L L  N+I  +T   F  +  L++L L        +      NL +L 
Sbjct: 17  TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR 76

Query: 81  HLDLSWTRIRGLPQE-LKALEKLRYLSLEGTR-HLSIIPHQLISGFSKLEVLRL 132
            LDL  ++I  L  +  + L  L  L L       +++          L  L L
Sbjct: 77  ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 4/99 (4%)

Query: 11  RISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP 70
            + L                L    L+ N++  +  G F  +++LR LSL  N  L+ L 
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR-LTVLS 520

Query: 71  SGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEG 109
                  +L  LD+S  ++     +      L  L +  
Sbjct: 521 HN-DLPANLEILDISRNQLLAPNPD--VFVSLSVLDITH 556

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 17/144 (11%), Positives = 31/144 (21%), Gaps = 24/144 (16%)

Query: 17  TGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRS--MSSLRVLSLRRNLALSKLPSGIS 74
             +           L +     N I  + +         +L   SL  N   S++     
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195

Query: 75  NL------VSLHHLDLSWTRIRGLP-------------QELKALEKLRYLSLEGTRHLSI 115
                   + L  LD+S                       L     +          +  
Sbjct: 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN-IKD 254

Query: 116 IPHQLISGF--SKLEVLRLLWCGL 137
                 +G   S +  L L    +
Sbjct: 255 PDQNTFAGLARSSVRHLDLSHGFV 278

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 66.7 bits (163), Expect = 1e-12
 Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 4/115 (3%)

Query: 28  CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSW 86
           C  L   +L  N I  I +  F S+ SL  L L  N  LS L S     L SL  L+L  
Sbjct: 75  CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLG 133

Query: 87  TRIRGLPQE--LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWS 139
              + L +      L KL+ L +      + I  +  +G + LE L +    L S
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 48/273 (17%), Positives = 90/273 (32%), Gaps = 47/273 (17%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLH 80
           PS +     + +  L  N I  I++   +   +L+ L L  N  ++ +     S+L SL 
Sbjct: 47  PSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLE 103

Query: 81  HLDLSWTRIRGLPQEL-KALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWS 139
           HLDLS+  +  L     K L  L +L+L G  + ++    L S  +KL++LR+     ++
Sbjct: 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 163

Query: 140 RKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYF 199
           +        +            GL  L  L             +    L S         
Sbjct: 164 K--------IQRKD------FAGLTFLEELE------------IDASDLQSYEPKS---L 194

Query: 200 CQSPPLNVLHLAY-------------MENLQELVILNSDLEEMKIDSAEEVKKLFRSGFR 246
                ++ L L                 +++ L + ++DL+          +        
Sbjct: 195 KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254

Query: 247 SLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSC 279
           +   V +      + +  L     L EL     
Sbjct: 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 9/113 (7%)

Query: 28  CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRN----LALSKLPSGISN----LVSL 79
              +   +L       + + F    SS+  L LR         S+L +G +N      + 
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 80  HHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            ++ ++   +  + + L  +  L  L     + L  +P  +    + L+ + L
Sbjct: 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWL 308

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 10/124 (8%)

Query: 24  EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLD 83
           E  T P  V   L    + +  D  FR +S L+ +++     L +LP  +     L  L 
Sbjct: 76  EDATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAA-GLMELPDTMQQFAGLETLT 133

Query: 84  LSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQL--------ISGFSKLEVLRLLWC 135
           L+   +R LP  + +L +LR LS+     L+ +P  L          G   L+ LRL W 
Sbjct: 134 LARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193

Query: 136 GLWS 139
           G+ S
Sbjct: 194 GIRS 197

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.0 bits (154), Expect = 1e-11
 Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 3/112 (2%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHH 81
           P+ I     L +  +  + +  +       +  L  L LR   AL   P        L  
Sbjct: 199 PASIANLQNLKSLKIRNSPLSALGPAIHH-LPKLEELDLRGCTALRNYPPIFGGRAPLKR 257

Query: 82  LDLSW-TRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           L L   + +  LP ++  L +L  L L G  +LS +P  LI+      ++ +
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP-SLIAQLPANCIILV 308

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 11/123 (8%)

Query: 22  PSEIPTCPRLVTFLLDG-NWIEEITDGF--------FRSMSSLRVLSLRRNLALSKLPSG 72
           P+ I +  RL    +     + E+ +           + + +L+ L L     +  LP+ 
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS 201

Query: 73  ISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           I+NL +L  L +  + +  L   +  L KL  L L G   L   P     G + L+ L L
Sbjct: 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLIL 260

Query: 133 LWC 135
             C
Sbjct: 261 KDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 22  PSEIPTCPRLVTF-LLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH 80
           P        L    L D + +  +       ++ L  L LR  + LS+LPS I+ L +  
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304

Query: 81  HLDLSWTRIRGLPQEL 96
            + +       L Q  
Sbjct: 305 IILVPPHLQAQLDQHR 320

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 3/118 (2%)

Query: 17  TGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRN-LALSKLPSGISN 75
             +   S   +   L+   +         +G F  +SSL VL +  N    + LP   + 
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 76  LVSLHHLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           L +L  LDLS  ++  L      +L  L+ L++   + L  +P  +    + L+ + L
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWL 525

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.4 bits (157), Expect = 9e-12
 Identities = 52/276 (18%), Positives = 96/276 (34%), Gaps = 22/276 (7%)

Query: 21  SPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSL 79
                 + P L    L    I+ I DG ++S+S L  L L  N  +  L  G  S L SL
Sbjct: 44  GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSL 102

Query: 80  HHLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLW 138
             L    T +  L    +  L+ L+ L++      S    +  S  + LE L L    + 
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 139 S---------RKEQEEGSVLYDDAEPLMK------ELLGLKHLNVLSWSLHSSLAVQKFL 183
           S          +       L     P+        + + L  L  L  +  S   ++  +
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT-LRNNFDSLNVMKTCI 221

Query: 184 KYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRS 243
           +    L + + V   F     L     + +E L  L I    L  +     +++  LF +
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY-YLDDIIDLF-N 279

Query: 244 GFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSC 279
              ++++ S+      + +    +    + L + +C
Sbjct: 280 CLTNVSSFSLVSVT-IERVKDFSYNFGWQHLELVNC 314

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.0 bits (151), Expect = 5e-11
 Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 5/121 (4%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI--SNLVSL 79
                    L    L  N +  ++  F   +  L  L  + +  L ++       +L +L
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHS-NLKQMSEFSVFLSLRNL 423

Query: 80  HHLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLW 138
            +LD+S T  R         L  L  L + G          + +    L  L L  C L 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 139 S 139
            
Sbjct: 484 Q 484

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 4/106 (3%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRN-LALSKLPSG-ISNLVSLHHLDLSW 86
             L       N            + SL  L L RN L+     S       SL +LDLS+
Sbjct: 325 KSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 87  TRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
             +  +      LE+L +L  + +    +    +      L  L +
Sbjct: 383 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 42/243 (17%), Positives = 80/243 (32%), Gaps = 41/243 (16%)

Query: 28  CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRN-LALSKLPSGISNLVSLHHLDLSW 86
              L   +     +  + +     + +L+ L++  N +   KLP   SNL +L HLDLS 
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 87  TRIRGLPQE---------------------LKALE-------KLRYLSLEGTRHLSIIPH 118
            +I+ +                        +  ++       +L  L+L        +  
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

Query: 119 QLISGFSKLEVLRLLWCGLWSRKEQEEGSV-LYDDAEPLMKELLGLKHLNVLSWSLHSSL 177
             I G + LEV RL+     +    E+      +    L  E   L +L+     +    
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 178 AVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEV 237
                +    L+S+T              V   +Y    Q L ++N    +      + +
Sbjct: 279 NCLTNVSSFSLVSVTIE-----------RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327

Query: 238 KKL 240
           K+L
Sbjct: 328 KRL 330

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 17  TGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SN 75
                P        L    L    +E+++   F S+SSL+VL++  N  L  +P GI   
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDR 516

Query: 76  LVSLHHLDLS 85
           L SL  + L 
Sbjct: 517 LTSLQKIWLH 526

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 66.3 bits (162), Expect = 2e-12
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 6/127 (4%)

Query: 10  KRISLMKTGIQS-PSEIPT-CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALS 67
           K   L K+ I +    + +    L    L  N I +I D  F  ++ L  L+L +N  L 
Sbjct: 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LG 336

Query: 68  KLPSGI-SNLVSLHHLDLSWTRIRGLPQEL-KALEKLRYLSLEGTRHLSIIPHQLISGFS 125
            + S +  NL  L  LDLS+  IR L  +    L  L+ L+L+  + L  +P  +    +
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLT 395

Query: 126 KLEVLRL 132
            L+ + L
Sbjct: 396 SLQKIWL 402

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.9 bits (148), Expect = 9e-11
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 4/108 (3%)

Query: 27  TCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLS 85
               + T  L  + I  +    F   + L  L+L +N  ++K+       L  L  L+LS
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLS 331

Query: 86  WTRIRGLPQEL-KALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
              +  +   + + L+KL  L L    H+  +  Q   G   L+ L L
Sbjct: 332 QNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELAL 378

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.0 bits (143), Expect = 4e-10
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 4/114 (3%)

Query: 23  SEIPTCPRLVTFL-LDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLH 80
            ++P  P  V ++ L  N I E+ +  F  +  L+ L + +      + +     L SL 
Sbjct: 23  HQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI 82

Query: 81  HLDLSWTRIRGLPQE-LKALEKLRYLSLEGTR-HLSIIPHQLISGFSKLEVLRL 132
            L L + +   L       L  L  L+L       +++        + LE+L L
Sbjct: 83  ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 30/130 (23%), Positives = 44/130 (33%), Gaps = 8/130 (6%)

Query: 10  KRISLMKTGIQS--PSEIPTCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLAL 66
             + L    I     +       L    ++       I +  FR +SSL +L L  N   
Sbjct: 33  NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QF 91

Query: 67  SKLPSGI-SNLVSLHHLDLSWTRIRG--LPQEL-KALEKLRYLSLEGTRHLSIIPHQLIS 122
            +L +G  + L +L  L L+   + G  L     K L  L  L L       I P     
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151

Query: 123 GFSKLEVLRL 132
              +  VL L
Sbjct: 152 NMRRFHVLDL 161

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 9/104 (8%)

Query: 36  LDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWTRIRGLPQ 94
           LD N I+ I        S L  L L  N  +  + +G  S L +L  L L   ++  +P 
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLSRVPA 258

Query: 95  ELKALEKLRYLSLEGTRHLSIIPHQLISG------FSKLEVLRL 132
            L  L+ L+ + L     ++ +              +    + L
Sbjct: 259 GLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISL 301

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.9 bits (156), Expect = 8e-12
 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 6/112 (5%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRN-LALSKLPSGISNLVSLH 80
           P  +P    LV   +  N I ++  G F  + ++  + +  N L  S    G  + + L+
Sbjct: 118 PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN 175

Query: 81  HLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           +L +S  ++ G+P++L   E L  L L+  + +  I  + +  +SKL  L L
Sbjct: 176 YLRISEAKLTGIPKDL--PETLNELHLDHNK-IQAIELEDLLRYSKLYRLGL 224

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 7/112 (6%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLH 80
           P EI   P      L  N I E+    F+ +  L  L L  N  +SK+     S L  L 
Sbjct: 49  PKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQ 105

Query: 81  HLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            L +S   +  +P  L     L  L +     +  +P  + SG   +  + +
Sbjct: 106 KLYISKNHLVEIPPNL--PSSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEM 154

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 29/128 (22%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI--------------- 73
             L   +L  N I +I +  F  +  L+ L + +N  L ++P  +               
Sbjct: 78  QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPSSLVELRIHDNRIR 136

Query: 74  -------SNLVSLHHLDLSWTRIRGLPQELKALE--KLRYLSLEGTRHLSIIPHQLISGF 124
                  S L +++ +++    +     E  A +  KL YL +   + L+ IP  L    
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK-LTGIPKDL---P 192

Query: 125 SKLEVLRL 132
             L  L L
Sbjct: 193 ETLNELHL 200

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 8/72 (11%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSM------SSLRVLSLRRN-LALSKLPSGI- 73
           P+ +P    L    L  N I ++    F  +      +    +SL  N +   ++     
Sbjct: 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316

Query: 74  SNLVSLHHLDLS 85
             +     +   
Sbjct: 317 RCVTDRLAIQFG 328

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.8 bits (158), Expect = 4e-12
 Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 6/114 (5%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLH 80
           PS++P     +        +  I  G F     L  + + +N  L  + + + SNL  LH
Sbjct: 25  PSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82

Query: 81  HLDLS-WTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            + +     +  +  E  + L  L+YL +  T  +  +P        +  +L +
Sbjct: 83  EIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDI 135

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.4 bits (149), Expect = 5e-11
 Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 6/106 (5%)

Query: 28  CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSW 86
               V   L+ N I+EI +  F       +     N  L +LP+ +         LD+S 
Sbjct: 153 SFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN-LEELPNDVFHGASGPVILDISR 211

Query: 87  TRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           TRI  LP     LE L+ L    T +L  +P   +     L    L
Sbjct: 212 TRIHSLPSY--GLENLKKLRARSTYNLKKLP--TLEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 2/111 (1%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVS-LHHLDLSW 86
           P L   L+    I+ + D          +L ++ N+ +  +       L      L L+ 
Sbjct: 104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163

Query: 87  TRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL 137
             I+ +        +L  L+L    +L  +P+ +  G S   +L +    +
Sbjct: 164 NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 54  SLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRH 112
           S RV   + +  ++++PS +    +   L    T++R + +        L  + +     
Sbjct: 10  SNRVFLCQES-KVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 113 LSIIPHQLISGFSKLEVLRLL 133
           L +I   + S   KL  +R+ 
Sbjct: 67  LEVIEADVFSNLPKLHEIRIE 87

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.7 bits (158), Expect = 7e-12
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 12/122 (9%)

Query: 21  SPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS--GISNLVS 78
                 +  +L +  L  N I EI   F      +  LS   N  L  +P+     ++  
Sbjct: 345 KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSV 403

Query: 79  LHHLDLSWTRIRG--------LPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVL 130
           +  +D S+  I          L         +  ++L     +S  P +L S  S L  +
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSI 462

Query: 131 RL 132
            L
Sbjct: 463 NL 464

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 16/120 (13%), Positives = 39/120 (32%), Gaps = 10/120 (8%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITD--------GFFRSMSSLRVLSLRRN-LALSKLPSG 72
           P+ +   P +    +  N                       ++++ +  N L    + + 
Sbjct: 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325

Query: 73  ISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           +  +  L  L+  + ++ G      +  KL  L+L     ++ IP        ++E L  
Sbjct: 326 LQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSF 384

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 10/123 (8%)

Query: 17  TGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALS------KLP 70
           T +       T P LV   L  N   +       + S+L+   +R            + P
Sbjct: 501 TKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL-NSSTLKGFGIRNQRDAQGNRTLREWP 559

Query: 71  SGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVL 130
            GI+   SL  L +    IR + +++     +  L ++   ++SI     +  + +  + 
Sbjct: 560 EGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDL-SYVCPYIEAGMY 616

Query: 131 RLL 133
            L 
Sbjct: 617 MLF 619

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 17/126 (13%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGF-------FRSMSSLRVLSLRRNLALSKLPSGI- 73
                T   L +  L GN + EI           F++   L  + LR N  L+KL     
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFR 508

Query: 74  -SNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLS------IIPHQLISGFSK 126
            + L  L  +DLS+      P +      L+   +   R           P + I+    
Sbjct: 509 ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP-EGITLCPS 567

Query: 127 LEVLRL 132
           L  L++
Sbjct: 568 LTQLQI 573

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 10/117 (8%), Positives = 27/117 (23%), Gaps = 3/117 (2%)

Query: 19  IQSPSEIPTCPRLVTFLLDGNWIE--EITDGFFRSMSSLRVLSLRRNLALSKLPSGISNL 76
           +  P  I                +   +        S L    +  +     +       
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 77  VSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLL 133
           +    +      I  + + +  L KLR   +  +  ++    +        E  +  
Sbjct: 183 LKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWE-NENSEYAQQY 238

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 6/88 (6%)

Query: 51  SMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRG-----LPQELKALEKLRYL 105
           S   +  LSL    A  ++P  I  L  L  L L     +       P+ + A       
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 106 SLEGTRHLSIIPHQLISG-FSKLEVLRL 132
                 +            FS L    +
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCI 166

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 9/115 (7%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLH 80
           P+ +P    +    L+ N I+ I  G F     LR + L  N  +S+L       L SL+
Sbjct: 27  PTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLN 83

Query: 81  HLDLSWTRIRGLPQEL-KALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLW 134
            L L   +I  LP+ L + L  L+ L L     ++ +       F  L  L LL 
Sbjct: 84  SLVLYGNKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDA---FQDLHNLNLLS 134

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWT 87
             L + +L GN I E+    F  + SL++L L  N  ++ L      +L +L+ L L   
Sbjct: 80  RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN 138

Query: 88  RIRGLPQE-LKALEKLRYLSLEG 109
           +++ + +     L  ++ + L  
Sbjct: 139 KLQTIAKGTFSPLRAIQTMHLAQ 161

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 15/116 (12%), Positives = 38/116 (32%), Gaps = 3/116 (2%)

Query: 17  TGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNL 76
             +       +   L    L  N+I ++        + L+ L L  N  L+ +     + 
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSN-KLAFMGPEFQSA 213

Query: 77  VSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
             +  + L   ++  + + L+  + L +  L G            S   +++ +  
Sbjct: 214 AGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.1 bits (141), Expect = 5e-10
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 6/99 (6%)

Query: 36  LDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG--ISNLVSLHHLDLSWTRIRGLP 93
           L  N I  + D      S ++ L L+ N  +  +      ++  +L HL+L +  I  + 
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185

Query: 94  QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            ++    KL+ L L   + L+ +  +     + +  + L
Sbjct: 186 GQVV-FAKLKTLDLSSNK-LAFMGPE-FQSAAGVTWISL 221

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 10/111 (9%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHH 81
            S   +   +    L GN + +I+       + L +L+L  N  L +    + +L +L  
Sbjct: 27  ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRT 84

Query: 82  LDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           LDL+   +    QEL     +  L       +S +     S     + + L
Sbjct: 85  LDLNNNYV----QELLVGPSIETLHAANNN-ISRVS---CSRGQGKKNIYL 127

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 8e-08
 Identities = 21/115 (18%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 19  IQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVS 78
           +    ++ +   L T  L+ N+++E+  G      S+  L    N  +S++         
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANN-NISRVSCSR--GQG 121

Query: 79  LHHLDLSWTRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
             ++ L+  +I  L   +     +++YL L+     ++   +L +    LE L L
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 9e-07
 Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 48  FFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWTRIRGLP-QELKALEKLRYL 105
             ++ +  ++  +  + +L +  + +  +  ++  LDLS   +  +   +L    KL  L
Sbjct: 5   IKQNGNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 106 SLEGTRHLSIIPHQLISGFSKLEVLRL 132
           +L     L       +   S L  L L
Sbjct: 64  NLSSNV-LYETLD--LESLSTLRTLDL 87

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 8/114 (7%)

Query: 22  PSEIPTCPRLVTFL-LDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSL 79
           P  +P        L L  N +  +    F S   L+VL L R   +  +  G   +L  L
Sbjct: 23  PDNLPF---STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHL 78

Query: 80  HHLDLSWTRIRGLPQEL-KALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
             L L+   I+ L       L  L+ L    T +L+ + +  I     L+ L +
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNV 131

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.8 bits (148), Expect = 6e-11
 Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 3/113 (2%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWT 87
           P L    L    I+ I DG ++S+S L  L L  N  +  L  G  S L SL  L    T
Sbjct: 52  PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET 110

Query: 88  RIRGLPQEL-KALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWS 139
            +  L       L+ L+ L++      S    +  S  + LE L L    + S
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWT 87
             L T +L GN I+ +  G F  +SSL+ L       L+ L +    +L +L  L+++  
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN 134

Query: 88  RIRGLPQE--LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            I+          L  L +L L   + +  I    +    ++ +L L
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNL 180

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 12/122 (9%)

Query: 19  IQS-PSEIPT-CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GI-S 74
           IQS      +    L   +     +  + +     + +L+ L++  NL +         S
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFS 146

Query: 75  NLVSLHHLDLSWTRIRGLPQE-LKALEKLRYLSLE---GTRHLSIIPHQLISGFSKLEVL 130
           NL +L HLDLS  +I+ +    L+ L ++  L+L        ++ I       F ++ + 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA---FKEIRLK 203

Query: 131 RL 132
            L
Sbjct: 204 EL 205

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 8/110 (7%)

Query: 29  PRLVTFLLDGNWIEEI-TDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSL----HHL 82
             L    +  N I+      +F ++++L  L L  N  +  +       L  +      L
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSL 182

Query: 83  DLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           DLS   +  +        +L+ L+L+  + L  +P  +    + L+ + L
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWL 231

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLA---LSKLPSGISNLVSLHHLDLS 85
             L    L  N I+ I     R +  + +L+L  +L+   ++ +  G    + L  L L 
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALD 208

Query: 86  WTRIRGLPQE-LKALEKLRYLSLEG 109
             +++ +P      L  L+ + L  
Sbjct: 209 TNQLKSVPDGIFDRLTSLQKIWLHT 233

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.8 bits (151), Expect = 6e-11
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 22  PSEIPTCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALS-KLPSGISNLVSL 79
           PS + +  +L    L  N +E EI       + +L  L L  N  L+ ++PSG+SN  +L
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFND-LTGEIPSGLSNCTNL 492

Query: 80  HHLDLSWTRIRG-LPQELKALEKLRYLSLEGTRHLS-IIPHQLISGFSKLEVLRL 132
           + + LS  R+ G +P+ +  LE L  L L      S  IP + +     L  L L
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNS-FSGNIPAE-LGDCRSLIWLDL 545

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 30/120 (25%), Positives = 40/120 (33%), Gaps = 7/120 (5%)

Query: 24  EIPT--CPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH 80
            IP      L    L  N    EI D    +  +L  L L  N     +P    +   L 
Sbjct: 262 PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321

Query: 81  HLDLSWTRIRG-LPQE-LKALEKLRYLSLEGTRHLS-IIPHQLISGFSKLEVLRLLWCGL 137
            L LS     G LP + L  +  L+ L L      S  +P  L +  + L  L L     
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLDLSSNNF 380

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 48  FFRSMSSLRVLSLRRNLALS-KLPSGISNLVSLHHLDLSWTRIRG-LPQELKALEKLRYL 105
           F    S+L+ L +  N  LS      IS    L  L++S  +  G +P     L+ L+YL
Sbjct: 218 FLGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYL 274

Query: 106 SLEGTRHLS-IIPHQLISGFSKLEVLRLLWCGL 137
           SL      +  IP  L      L  L L     
Sbjct: 275 SLAEN-KFTGEIPDFLSGACDTLTGLDLSGNHF 306

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 1/86 (1%)

Query: 53  SSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRH 112
           +S+ + S   N+  S + S + +L  L  L LS + I G     K    L  L L     
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSL 112

Query: 113 LSIIPHQL-ISGFSKLEVLRLLWCGL 137
              +     +   S L+ L +    L
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTL 138

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 8/120 (6%)

Query: 17  TGIQSPSEIPTCPRLVTFLLDGNWIE-EITDGFFR--SMSSLRVLSLRRNLALSKLPSGI 73
                 S       L    L  N I      G+        L+ L++  N     +   +
Sbjct: 139 DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--V 196

Query: 74  SNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLS-IIPHQLISGFSKLEVLRL 132
           S  V+L  LD+S          L     L++L + G   LS       IS  ++L++L +
Sbjct: 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN-KLSGDFSRA-ISTCTELKLLNI 254

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.4 bits (111), Expect = 6e-06
 Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 9/123 (7%)

Query: 22  PSEIPTCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALSKLPSG--ISNLVS 78
            S + +   L +  L  + I   ++   F+  +SL  L L RN     + +   + +   
Sbjct: 70  SSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127

Query: 79  LHHLDLSWTRIRGL--PQELKALEKLRYLSLEGTRHLSIIPHQL--ISGFSKLEVLRLLW 134
           L  L++S   +           L  L  L L                 G  +L+ L +  
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187

Query: 135 CGL 137
             +
Sbjct: 188 NKI 190

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 8/114 (7%)

Query: 22  PSEIPTCPRLVTFLLDGNWIE---EITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVS 78
              I            GN +E     ++     +S+    ++   +          N  S
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGS 633

Query: 79  LHHLDLSWTRIRG-LPQELKALEKLRYLSLEGTRHLS-IIPHQLISGFSKLEVL 130
           +  LD+S+  + G +P+E+ ++  L  L+L     +S  IP + +     L +L
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPDE-VGDLRGLNIL 685

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGF---FRSMSSLRVLSLRRNLALS-KLPSGISNLV 77
           PS +  C  L    L  N    +T         + +L +L L  N + S  +P+ + +  
Sbjct: 483 PSGLSNCTNLNWISLSNN---RLTGEIPKWIGRLENLAILKLSNN-SFSGNIPAELGDCR 538

Query: 78  SLHHLDLSWTRIRG-LPQELKALEKL 102
           SL  LDL+     G +P  +      
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFKQSGK 564

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 13/93 (13%)

Query: 22  PSEIPTCPRLVTFLLDGNWI-----EEITDGFFRSMSSLRVLSLRRNLALS-KLPSGISN 75
                    ++   +  N +     +EI       M  L +L+L  N  +S  +P  + +
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-----MPYLFILNLGHN-DISGSIPDEVGD 678

Query: 76  LVSLHHLDLSWTRIRG-LPQELKALEKLRYLSL 107
           L  L+ LDLS  ++ G +PQ + AL  L  + L
Sbjct: 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.4 bits (149), Expect = 8e-11
 Identities = 15/116 (12%), Positives = 38/116 (32%), Gaps = 3/116 (2%)

Query: 17  TGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNL 76
             +       +   L    L  N+I ++        + L+ L L  N  L+ +     + 
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSN-KLAFMGPEFQSA 213

Query: 77  VSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
             +  + L   ++  + + L+  + L +  L G            S   +++ +  
Sbjct: 214 AGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 2e-09
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 6/99 (6%)

Query: 36  LDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG--ISNLVSLHHLDLSWTRIRGLP 93
           L  N I  + D      S ++ L L+ N  +  +      ++  +L HL+L +  I  + 
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185

Query: 94  QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            ++    KL+ L L   + L+ +  +     + +  + L
Sbjct: 186 GQVV-FAKLKTLDLSSNK-LAFMGPE-FQSAAGVTWISL 221

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.4 bits (136), Expect = 4e-09
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 10/111 (9%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHH 81
            S   +   +    L GN + +I+       + L +L+L  N  L +    + +L +L  
Sbjct: 27  ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRT 84

Query: 82  LDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           LDL+   +    QEL     +  L       +S +     S     + + L
Sbjct: 85  LDLNNNYV----QELLVGPSIETLHAANNN-ISRVS---CSRGQGKKNIYL 127

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.3 bits (128), Expect = 4e-08
 Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 10/112 (8%)

Query: 21  SPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH 80
           S +++    +L    L  N + E  D    S+S+LR L L  N  + +L        S+ 
Sbjct: 50  SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELL----VGPSIE 102

Query: 81  HLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            L  +   I  +       +  + + L   + ++++        S+++ L L
Sbjct: 103 TLHAANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDL 151

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 21/115 (18%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 19  IQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVS 78
           +    ++ +   L T  L+ N+++E+  G      S+  L    N  +S++         
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANN-NISRVSCSR--GQG 121

Query: 79  LHHLDLSWTRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
             ++ L+  +I  L   +     +++YL L+     ++   +L +    LE L L
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 7e-07
 Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 9/105 (8%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSLHHLDLSWT 87
            R     +  + +++      +S  +++ L L  N  LS++ +  ++    L  L+LS  
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN 68

Query: 88  RIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            +     +L++L  LR L L     +  +          +E L  
Sbjct: 69  VLYETL-DLESLSTLRTLDLNNNY-VQELL-----VGPSIETLHA 106

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 49  FRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWTRIRGL-PQELKALEKLRYLS 106
            ++ +  ++  +  + +L +  + +  +  ++  LDLS   +  +   +L    KL  L+
Sbjct: 6   KQNGNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 107 LEGTRHLSIIPHQLISGFSKLEVLRL 132
           L     L       +   S L  L L
Sbjct: 65  LSSNV-LYETLD--LESLSTLRTLDL 87

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWT 87
           P+L       N I +I +G F   S +  + L  N  L  +   +   L SL  L L   
Sbjct: 57  PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSN 115

Query: 88  RIRGLPQEL-KALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLL 133
           RI  +  +    L  +R LSL   + ++ +          L  L LL
Sbjct: 116 RITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLL 161

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 10/116 (8%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEIT-DGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSL 79
           P  IP         L+ N    +   G F+ +  LR ++   N  ++ +  G       +
Sbjct: 27  PEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGV 83

Query: 80  HHLDLSWTRIRGLPQEL-KALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLW 134
           + + L+  R+  +  ++ K LE L+ L L     ++ + +     F  L  +RLL 
Sbjct: 84  NEILLTSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGN---DSFIGLSSVRLLS 135

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWT 87
             +   LL  N +E +    F+ + SL+ L LR N  ++ + +     L S+  L L   
Sbjct: 81  SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDN 139

Query: 88  RIRGLPQE-LKALEKLRYLSLEG 109
           +I  +       L  L  L+L  
Sbjct: 140 QITTVAPGAFDTLHSLSTLNLLA 162

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 24/123 (19%), Positives = 54/123 (43%), Gaps = 7/123 (5%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
           + ++L    I   S +    +L    +  N I +I+    +++++LR L L  +  +S +
Sbjct: 69  EYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDN-ISDI 125

Query: 70  PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEV 129
              ++NL  ++ L+L           L  +  L YL++  ++ +  +    I+  + L  
Sbjct: 126 SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYS 181

Query: 130 LRL 132
           L L
Sbjct: 182 LSL 184

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 6e-09
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 8/123 (6%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
             +SL    I+  S + +   L  F    N I +IT     +M+ L  L +  N  ++ L
Sbjct: 180 YSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN-KITDL 236

Query: 70  PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEV 129
              ++NL  L  L++   +I  +   +K L KL+ L++   + +S I    ++  S+L  
Sbjct: 237 S-PLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQ-ISDISV--LNNLSQLNS 291

Query: 130 LRL 132
           L L
Sbjct: 292 LFL 294

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.9 bits (133), Expect = 8e-09
 Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 8/124 (6%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
             + +    I   S +    +L    +  N I +I     + ++ L++L++  N  +S +
Sbjct: 224 NSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSN-QISDI 280

Query: 70  PSGISNLVSLHHLDLSWTRIRGL-PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLE 128
              ++NL  L+ L L+  ++     + +  L  L  L L       I P   ++  SK++
Sbjct: 281 SV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMD 336

Query: 129 VLRL 132
               
Sbjct: 337 SADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 26/144 (18%), Positives = 55/144 (38%), Gaps = 27/144 (18%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNL----- 64
             + +    I   S +     L    L+ + I +I+     +++ +  L+L  N      
Sbjct: 91  TNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDL 148

Query: 65  -ALSKLP---------------SGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLE 108
             LS +                + I+NL  L+ L L++ +I  +   L +L  L Y +  
Sbjct: 149 SPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTAY 207

Query: 109 GTRHLSIIPHQLISGFSKLEVLRL 132
             +   I P   ++  ++L  L++
Sbjct: 208 VNQITDITP---VANMTRLNSLKI 228

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
             + +    I   + +    +L    +  N I +I+     ++S L  L L  N   ++ 
Sbjct: 246 TWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNED 303

Query: 70  PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTR 111
              I  L +L  L LS   I  +   L +L K+         
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIR-PLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 8/125 (6%)

Query: 8   GAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALS 67
           GA  ++ +   I            +  +L    + ++       + S+  L +     ++
Sbjct: 1   GAATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEK-VA 57

Query: 68  KLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKL 127
            +  GI  L +L +L+L+  +I  +   L  L KL  L +   + ++ I    +   + L
Sbjct: 58  SIQ-GIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNK-ITDISA--LQNLTNL 112

Query: 128 EVLRL 132
             L L
Sbjct: 113 RELYL 117

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 13/81 (16%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
           K +++    I   S +    +L +  L+ N +          +++L  L L +N  ++ +
Sbjct: 268 KMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDI 326

Query: 70  PSGISNLVSLHHLDLSWTRIR 90
              +++L  +   D +   I+
Sbjct: 327 RP-LASLSKMDSADFANQVIK 346

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.6 bits (142), Expect = 4e-10
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 5/111 (4%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHH 81
           P ++P         L  N +   +       + L  L+L R   L+KL      L  L  
Sbjct: 26  PPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGT 81

Query: 82  LDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           LDLS  +++ LP   + L  L  L +   R L+ +P   + G  +L+ L L
Sbjct: 82  LDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYL 131

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 35/126 (27%), Positives = 48/126 (38%), Gaps = 6/126 (4%)

Query: 10  KRISLMKTGIQS-PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSK 68
             + L    +QS P    T P L    +  N +  +  G  R +  L+ L L+ N  L  
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKT 138

Query: 69  LPSGI-SNLVSLHHLDLSWTRIRGLPQEL-KALEKLRYLSLEGTRHLSIIPHQLISGFSK 126
           LP G+ +    L  L L+   +  LP  L   LE L  L L+    L  IP     G   
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ-ENSLYTIPKG-FFGSHL 196

Query: 127 LEVLRL 132
           L    L
Sbjct: 197 LPFAFL 202

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLS 85
           P+L    L  N + E+  G    + +L  L L+ N +L  +P G      L    L 
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLH 203

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.6 bits (141), Expect = 6e-10
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 8/123 (6%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
            +I    + I+S   I   P +    L+GN + +I      ++ +L  L L  N  +  L
Sbjct: 46  DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDL 102

Query: 70  PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEV 129
            S + +L  L  L L    I  +   L  L +L  L L   +   I     +S  +KL+ 
Sbjct: 103 -SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITV---LSRLTKLDT 157

Query: 130 LRL 132
           L L
Sbjct: 158 LSL 160

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.7 bits (136), Expect = 3e-09
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 8/123 (6%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
             + L +  I+  S +    +L +  L+ N I +I       +  L  L L  N  ++ +
Sbjct: 90  GWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNK-ITDI 146

Query: 70  PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEV 129
            + +S L  L  L L   +I  +   L  L KL+ L L       +     ++G   L+V
Sbjct: 147 -TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLRA---LAGLKNLDV 201

Query: 130 LRL 132
           L L
Sbjct: 202 LEL 204

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 16/98 (16%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 35  LLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQ 94
           +     I++I      + +     +L++   ++      + L S+  +  + + I+ + Q
Sbjct: 5   ITVSTPIKQIFP--DDAFAETIKDNLKKKS-VTDA-VTQNELNSIDQIIANNSDIKSV-Q 59

Query: 95  ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            ++ L  +  L L G +   I P   ++    L  L L
Sbjct: 60  GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFL 94

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.6 bits (102), Expect = 6e-05
 Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
           + + L    I   + +    +L T  L+ N I +I       ++ L+ L L +N  +S L
Sbjct: 134 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNH-ISDL 190

Query: 70  PSGISNLVSLHHLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLE 128
              ++ L +L  L+L        P      L     +        S++  ++IS     E
Sbjct: 191 -RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN---TDGSLVTPEIISDDGDYE 246

Query: 129 VLRLLWCGLWSRKE 142
              + W       E
Sbjct: 247 KPNVKWHLPEFTNE 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 8/123 (6%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
             +   + GI+S   +     L       N + +IT    ++++ L  + +  N  ++ +
Sbjct: 49  TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQ-IADI 105

Query: 70  PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEV 129
              ++NL +L  L L   +I  +   LK L  L  L L     +S I    +SG + L+ 
Sbjct: 106 T-PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQ 160

Query: 130 LRL 132
           L  
Sbjct: 161 LSF 163

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 8/123 (6%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
           +R+ +    +   S +     L + +   N I +IT      +++L  LSL  N  L  +
Sbjct: 180 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGN-QLKDI 236

Query: 70  PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEV 129
            + +++L +L  LDL+  +I  L   L  L KL  L L   +  +I P   ++G + L  
Sbjct: 237 GT-LASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISP---LAGLTALTN 291

Query: 130 LRL 132
           L L
Sbjct: 292 LEL 294

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 9/124 (7%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
             + L +  ++  S I     L    L  N I +I+     S++ L+ L    N  +S +
Sbjct: 290 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK-VSDV 346

Query: 70  PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEV 129
            S ++NL +++ L     +I  L   L  L ++  L L      +  P   ++  + + +
Sbjct: 347 SS-LANLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQA-WTNAP---VNYKANVSI 400

Query: 130 LRLL 133
              +
Sbjct: 401 PNTV 404

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 8/116 (6%)

Query: 17  TGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNL 76
           T I            +  +L    + +        +  +  L   R   +  +  G+  L
Sbjct: 12  TPINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG-IKSI-DGVEYL 67

Query: 77  VSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            +L  ++ S  ++  +   LK L KL  + +   +   I P   ++  + L  L L
Sbjct: 68  NNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTL 119

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 9/123 (7%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
            R+ L    I   S +     L      GN + ++      ++++L  L +  N  +S +
Sbjct: 137 NRLELSSNTISDISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSN-KVSDI 192

Query: 70  PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEV 129
              ++ L +L  L  +  +I  +   L  L  L  LSL G +   I     ++  + L  
Sbjct: 193 SV-LAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDIGT---LASLTNLTD 247

Query: 130 LRL 132
           L L
Sbjct: 248 LDL 250

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 19/125 (15%), Positives = 43/125 (34%), Gaps = 6/125 (4%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
             ++L    I   S + +  +L       N + +++     +++++  LS   N  +S L
Sbjct: 312 TYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQ-ISDL 368

Query: 70  PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEV 129
              ++NL  +  L L+       P        +   +       ++I    IS       
Sbjct: 369 TP-LANLTRITQLGLNDQAWTNAPVNY--KANVSIPNTVKNVTGALIAPATISDGGSYTE 425

Query: 130 LRLLW 134
             + W
Sbjct: 426 PDITW 430

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 8/123 (6%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
           K + L  T I   + +     L    LD N I  I+      +++L+ LS+     +S L
Sbjct: 110 KTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNA-QVSDL 166

Query: 70  PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEV 129
            + ++NL  L  L     +I  +   L +L  L  + L+  +   + P   ++  S L +
Sbjct: 167 -TPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSP---LANTSNLFI 221

Query: 130 LRL 132
           + L
Sbjct: 222 VTL 224

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 8/123 (6%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
             +S   TG+ +   +     L+   L  N I ++     ++++ +  L L  N  L  +
Sbjct: 44  TTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP-LKNV 100

Query: 70  PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEV 129
            S I+ L S+  LDL+ T+I  +   L  L  L+ L L+  +  +I P   ++G + L+ 
Sbjct: 101 -SAIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNISP---LAGLTNLQY 155

Query: 130 LRL 132
           L +
Sbjct: 156 LSI 158

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 8/116 (6%)

Query: 17  TGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNL 76
           T I      P     +      + + +        +  +  LS      ++ +  G+  L
Sbjct: 7   TAINVIFPDPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTG-VTTI-EGVQYL 62

Query: 77  VSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            +L  L+L   +I  L   LK L K+  L L G    ++     I+G   ++ L L
Sbjct: 63  NNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNVSA---IAGLQSIKTLDL 114

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 8/113 (7%)

Query: 22  PSEIPTCPRLVTFL-LDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSL 79
           P ++       T L +  N+I E+      S+S LR+L +  N  +  L   +      L
Sbjct: 16  PKDLSQ---KTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQEL 71

Query: 80  HHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            +LDLS  ++  +         L++L L      ++   +     S+L+ L L
Sbjct: 72  EYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 5/101 (4%)

Query: 36  LDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWTRIRGLPQ 94
              +    +       +S    L    NL L+        +L  L  L L   +++ L +
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQLKELSK 365

Query: 95  ELKA---LEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
             +    ++ L+ L +              S    L  L +
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 8/107 (7%)

Query: 29  PRLVTFLLDGNWIEEI-TDGFFRSMSSLRVLSLRRNLALSKLPSGISN--LVSLHHLDLS 85
             L    +  N +      G      SL  L++  N     L   I       +  LDL 
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN----ILTDTIFRCLPPRIKVLDLH 429

Query: 86  WTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
             +I+ +P+++  LE L+ L++   + L  +P  +    + L+ + L
Sbjct: 430 SNKIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWL 475

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.8 bits (137), Expect = 3e-09
 Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 8/113 (7%)

Query: 22  PSEIPTCPRLVTFL-LDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSL 79
           P ++P        L L  N I E+       +S LRVL L  N  +  L   +      L
Sbjct: 47  PKDLPPR---TKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDL 102

Query: 80  HHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            +LD+S  R++ +      +  LR+L L       +   +     +KL  L L
Sbjct: 103 EYLDVSHNRLQNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL 153

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.9 bits (119), Expect = 5e-07
 Identities = 36/229 (15%), Positives = 62/229 (27%), Gaps = 27/229 (11%)

Query: 21  SPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH 80
              +I     L    L  N I  +    F     L  L +  N  L  +      + SL 
Sbjct: 68  RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLR 124

Query: 81  HLDLSWTRIRGLPQ--ELKALEKLRYLSLEGTRHLSIIPHQLISG--------------- 123
           HLDLS+     LP   E   L KL +L L   +    +    ++                
Sbjct: 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLDLLPVAHLHLSCILLDLVSYHI 183

Query: 124 ----FSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAV 179
                  L++       L           +      L    L L ++ +   +    +  
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNAL--GHLQLSNIKLNDENCQRLMTF 241

Query: 180 QKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE 228
              L     L       +       + +    +   ++ L I N  + E
Sbjct: 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.4 bits (110), Expect = 6e-06
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 3/100 (3%)

Query: 36  LDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQ- 94
           L  +    I      S SS   L+  +N+    +  G S L  L  L L    ++   + 
Sbjct: 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395

Query: 95  --ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
               K +  L  L +      S    +  +    + VL L
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 46  DGFFRSMSSLRVLSLRRNLALSKLPSGISN--LVSLHHLDLSWTRIRGLPQELKALEKLR 103
           D       S+ VL+L  N     L   +       +  LDL   RI  +P+++  L+ L+
Sbjct: 421 DRTCAWAESILVLNLSSN----MLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQ 476

Query: 104 YLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            L++   + L  +P  +    + L+ + L
Sbjct: 477 ELNVASNQ-LKSVPDGVFDRLTSLQYIWL 504

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 5e-09
 Identities = 49/332 (14%), Positives = 96/332 (28%), Gaps = 89/332 (26%)

Query: 28  CPRLVT-------FLLDGNW-----IEEITDGFFRSMSSLRVLSLRRNLALSKLPS---G 72
           C  L+T         L         ++  +           +L    +     LP     
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLT 324

Query: 73  ISNLV------SLHHLDLSWTRIRGLPQELKALEKLRYLSLEG-----TRH----LSIIP 117
            +         S+     +W   + +      L  +   SL        R     LS+ P
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHV--NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 118 -HQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSS 176
               I       +L L+W  +    + +   V+      L K  L  K     + S+  S
Sbjct: 383 PSAHIP----TILLSLIWFDV---IKSDVMVVV----NKLHKYSLVEKQPKESTISIP-S 430

Query: 177 LAVQKFLKYPKLLSITQS-VGVY-----FCQ---SPPLN--------VLHLAYMENLQEL 219
           + ++  +K     ++ +S V  Y     F      PP            HL  +E+ + +
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490

Query: 220 VILNS---DLEEMKIDSAEEVKKLFRSGF------RSLNTVSV-----DYCQKAKDLTWL 265
            +      D   ++       +K+             LNT+        Y          
Sbjct: 491 TLFRMVFLDFRFLE-------QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP---- 539

Query: 266 VFAQNLKELRIDSCYDVEEIISVDKLSDISEI 297
            + + +  + +D    +EE +   K +D+  I
Sbjct: 540 KYERLVNAI-LDFLPKIEENLICSKYTDLLRI 570

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 43/282 (15%), Positives = 93/282 (32%), Gaps = 84/282 (29%)

Query: 6   WEGAKRISLMK--TGIQS------PSEIPTC-PRLVTFLLDGN---------WIEEITDG 47
           W+  K ++  K  T I+S      P+E      RL  F    +         W + I   
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403

Query: 48  FFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSL 107
               ++ L   SL     + K P    + +S+  + L    ++   +   AL        
Sbjct: 404 VMVVVNKLHKYSL-----VEKQPK--ESTISIPSIYL---ELKVKLENEYAL-------- 445

Query: 108 EGTRHLSIIPH-QLISGFSKLEVLRLLWCGLW--------SRKEQEEG----SVLYDDAE 154
               H SI+ H  +   F   +++       +           E  E      +++ D  
Sbjct: 446 ----HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501

Query: 155 PLMKELLGLKHLNVLSWSLHSSLA--VQKFLKYPK---------------LLSITQSVGV 197
            L +++   +H +  +W+   S+   +Q+   Y                 +L     +  
Sbjct: 502 FLEQKI---RH-DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557

Query: 198 YFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKK 239
               S   ++L +A          L ++ E +  ++ ++V++
Sbjct: 558 NLICSKYTDLLRIA----------LMAEDEAIFEEAHKQVQR 589

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 6/113 (5%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLH 80
           PS IP         L  N +  +    F  ++ LR+L L  N  L  LP+GI   L +L 
Sbjct: 32  PSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLE 88

Query: 81  HLDLSWTRIRGLPQEL-KALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            L ++  +++ LP  +   L  L  L L+  + L  +P ++    +KL  L L
Sbjct: 89  TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSL 140

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.2 bits (131), Expect = 8e-09
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 4/106 (3%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWT 87
             L T  +  N ++ +  G F  + +L  L L RN  L  LP  +  +L  L +L L + 
Sbjct: 85  KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYN 143

Query: 88  RIRGLPQEL-KALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            ++ LP+ +   L  L+ L L   + L  +P       ++L+ L+L
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKL 188

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.7 bits (131), Expect = 8e-09
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 19  IQSPSEIPTCPRLVTFLLDGN-WIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNL 76
           + S   +P    L    ++    ++ +     R +  LR L++ ++  L  +        
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFT 79

Query: 77  VSLHHLDLSWTRIRGLPQELKALEKLRYLSLEG 109
             L  L+LS+  +  L  +      L+ L L G
Sbjct: 80  PRLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 8/123 (6%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
             + L +  ++  S +    +L +  L+ N I +I       +  L  L L  N  ++ +
Sbjct: 93  GWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNK-ITDI 149

Query: 70  PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEV 129
            + +S L  L  L L   +I  +   L  L KL+ L L       +     ++G   L+V
Sbjct: 150 -TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLRA---LAGLKNLDV 204

Query: 130 LRL 132
           L L
Sbjct: 205 LEL 207

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 8/123 (6%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
            +I    + I+S   I   P +    L+GN + +I      ++ +L  L L  N  +  L
Sbjct: 49  DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDL 105

Query: 70  PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEV 129
            S + +L  L  L L    I  +   L  L +L  L L   +   I     +S  +KL+ 
Sbjct: 106 -SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDITV---LSRLTKLDT 160

Query: 130 LRL 132
           L L
Sbjct: 161 LSL 163

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 11/133 (8%)

Query: 4   EEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRN 63
           + +    + +L K  +           +   + + + I+ +     + + ++  L L  N
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGN 78

Query: 64  LALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISG 123
             L+ +   ++NL +L  L L   +++ L   LK L+KL+ LSLE       I    I+G
Sbjct: 79  K-LTDI-KPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNG----I--SDING 129

Query: 124 FSKLEVLRLLWCG 136
              L  L  L+ G
Sbjct: 130 LVHLPQLESLYLG 142

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 8/119 (6%)

Query: 14  LMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI 73
            + T I+           +   L    + +        ++S+  +    +  +  +  GI
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSD-IKSV-QGI 64

Query: 74  SNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
             L ++  L L+  ++  +   L  L+ L +L L+  +   +     +    KL+ L L
Sbjct: 65  QYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLSS---LKDLKKLKSLSL 119

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 39.3 bits (92), Expect = 9e-04
 Identities = 16/108 (14%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 29  PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTR 88
           P     +     I++I      + +     +L++   ++      + L S+  +  + + 
Sbjct: 2   PLGSETITVPTPIKQIFS--DDAFAETIKDNLKKKS-VTDA-VTQNELNSIDQIIANNSD 57

Query: 89  IRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCG 136
           I+ + Q ++ L  +  L L G +   I         + L+ L  L+  
Sbjct: 58  IKSV-QGIQYLPNVTKLFLNGNKLTDI------KPLANLKNLGWLFLD 98

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 3/123 (2%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
           K +++      + + I     L    + G  +          ++SL +L +  +     +
Sbjct: 69  KDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 70  PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEV 129
            + I+ L  ++ +DLS+         LK L +L+ L+++            I  F KL  
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG---IEDFPKLNQ 185

Query: 130 LRL 132
           L  
Sbjct: 186 LYA 188

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 13/104 (12%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 10  KRISLMKTGIQS--PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALS 67
           +R+ +M   + S     +     L    +  +  ++       ++  +  + L  N A++
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 68  KLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTR 111
            +   +  L  L  L++ +  +    + ++   KL  L      
Sbjct: 151 DI-MPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 10/107 (9%)

Query: 30  RLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRI 89
             +  LL  +    IT+     M+SL  ++L     ++ L +GI    ++  L ++    
Sbjct: 24  AYLNGLLGQSSTANITEA---QMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHA 78

Query: 90  RGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCG 136
                 +  L  L  L + G      +    I   S L  L LL   
Sbjct: 79  TNY-NPISGLSNLERLRIMGKD----VTSDKIPNLSGLTSLTLLDIS 120

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 14/119 (11%)

Query: 19  IQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVS 78
           ++   E+   P L     D N ++++ D       SL  +    N+ L +LP  + NL  
Sbjct: 185 LEELPELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNI-LEELPE-LQNLPF 238

Query: 79  LHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL 137
           L  +      ++ LP    +LE L       T         L      L  L +     
Sbjct: 239 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLT--------DLPELPQSLTFLDVSENIF 289

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 24/128 (18%)

Query: 19  IQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVS 78
           ++   E+   P L T   D N ++ + D       SL  L++R N  L+ LP    +L  
Sbjct: 227 LEELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNY-LTDLPELPQSLTF 281

Query: 79  LHHLDLSWTRIRGLPQELKAL--------------EKLRYLSLEGTRHLSIIPHQLISGF 124
           L   +  ++ +  LP  L  L                L  L++   + L  +P       
Sbjct: 282 LDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPALP---- 336

Query: 125 SKLEVLRL 132
            +LE L  
Sbjct: 337 PRLERLIA 344

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 13/111 (11%)

Query: 23  SEIPTCPRLVTFL-LDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHH 81
             +   P L+ +L +  N +E++ +   ++ S L+++ +  N +L KLP    +L     
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNN-SLKKLPDLPPSLE---F 177

Query: 82  LDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           +     ++  LP EL+ L  L  +  +    L  +P   +S    LE +  
Sbjct: 178 IAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDLPLS----LESIVA 222

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 16/130 (12%)

Query: 5   EWEGAKRISLMKTGIQSPSEIPTCP--RLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRR 62
           EWE        +    + S +  C   +     L+   +  + +        L  L    
Sbjct: 45  EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE----LPPHLESLVASC 100

Query: 63  NLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLIS 122
           N +L++LP    +L SL   + +   +  LP        L YL +   + L  +P   + 
Sbjct: 101 N-SLTELPELPQSLKSLLVDNNNLKALSDLP------PLLEYLGVSNNQ-LEKLPE--LQ 150

Query: 123 GFSKLEVLRL 132
             S L+++ +
Sbjct: 151 NSSFLKIIDV 160

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 14/112 (12%)

Query: 23  SEIPTCPRLVTFL-LDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHH 81
           S +   P  + +L    N I  + D       SL  L++  N  L +LP+    L     
Sbjct: 290 SGLSELPPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNK-LIELPALPPRL---ER 341

Query: 82  LDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLL 133
           L  S+  +  +P+  +    L+ L +E    L   P  +      L +   L
Sbjct: 342 LIASFNHLAEVPELPQ---NLKQLHVEYNP-LREFP-DIPESVEDLRMNSHL 388

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 21/123 (17%), Positives = 36/123 (29%), Gaps = 25/123 (20%)

Query: 26  PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH----- 80
              PRL   +   N + E+ +       +L+ L +  N  L + P    ++  L      
Sbjct: 334 ALPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSHL 388

Query: 81  -----------HLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEV 129
                       L +    +R  P   +++E LR  S                   KLE 
Sbjct: 389 AEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETT----DKLED 444

Query: 130 LRL 132
              
Sbjct: 445 DVF 447

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.6 bits (128), Expect = 3e-08
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 5/107 (4%)

Query: 5   EWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNL 64
           E+   + + L    +     +     +    L  N +  +      ++  L VL    N 
Sbjct: 439 EYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDN- 496

Query: 65  ALSKLPSGISNLVSLHHLDLSWTRIRGLP--QELKALEKLRYLSLEG 109
           AL  +  G++NL  L  L L   R++     Q L +  +L  L+L+G
Sbjct: 497 ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.0 bits (103), Expect = 4e-05
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 52  MSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTR 111
            + +RVL L     L+ L   +  L+ + HLDLS  R+R LP  L AL  L  L      
Sbjct: 440 YADVRVLHLAHK-DLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA 497

Query: 112 HLSIIPHQLISGFSKLEVLRLLWCG 136
             +      + G + L  L+ L   
Sbjct: 498 LEN------VDGVANLPRLQELLLC 516

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.5 bits (127), Expect = 4e-08
 Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 10/122 (8%)

Query: 17  TGIQSPSEIPTCPRLVTFLLDGNWIE---EITDGFFRSMSSLRVLSLRRNLALS-KLPSG 72
            G+          R+    L G  +     I       +  L  L +     L   +P  
Sbjct: 39  LGV-LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPA 96

Query: 73  ISNLVSLHHLDLSWTRIRG-LPQELKALEKLRYLSLEGTRHLS-IIPHQLISGFSKLEVL 130
           I+ L  LH+L ++ T + G +P  L  ++ L  L       LS  +P   IS    L  +
Sbjct: 97  IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPS-ISSLPNLVGI 154

Query: 131 RL 132
             
Sbjct: 155 TF 156

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 22  PSEIPTCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALS-KLPSGISNLVSL 79
           P  I    +L    +    +   I D F   + +L  L    N ALS  LP  IS+L +L
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNL 151

Query: 80  HHLDLSWTRIRG-LPQELKALEKL-RYLSL 107
             +     RI G +P    +  KL   +++
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 7/99 (7%)

Query: 22  PSEIPTCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALS-KLPSGISNLVSL 79
                +        L  N +  ++         +L  L LR N  +   LP G++ L  L
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFL 270

Query: 80  HHLDLSWTRIRG-LPQELKALEKLRYLSLEGTRHLSIIP 117
           H L++S+  + G +PQ    L++    +    + L   P
Sbjct: 271 HSLNVSFNNLCGEIPQGGN-LQRFDVSAYANNKCLCGSP 308

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.0 bits (127), Expect = 5e-08
 Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 12/154 (7%)

Query: 23  SEIPTCPRLVTFL-LDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHH 81
           + +P  P  +  L + GN +  +        S L+ L +  N  L+ LP   S L     
Sbjct: 214 TSLPALPSGLKELIVSGNRLTSLPV----LPSELKELMVSGN-RLTSLPMLPSGL---LS 265

Query: 82  LDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVL--RLLWCGLWS 139
           L +   ++  LP+ L  L     ++LEG   LS    Q +   +        ++   +  
Sbjct: 266 LSVYRNQLTRLPESLIHLSSETTVNLEGNP-LSERTLQALREITSAPGYSGPIIRFDMAG 324

Query: 140 RKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSL 173
                E   L+  A   +      +      W +
Sbjct: 325 ASAPRETRALHLAAADWLVPAREGEPAPADRWHM 358

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 26/126 (20%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHH 81
           P  +P    + T ++  N +  +          LR L +  N  L+ LP     L+ L  
Sbjct: 56  PDCLPA--HITTLVIPDNNLTSLPALP----PELRTLEVSGNQ-LTSLPVLPPGLLELSI 108

Query: 82  LDLSWTRIRGLPQELKALE--------------KLRYLSLEGTRHLSIIPHQLISGFSKL 127
                T +  LP  L  L                L+ LS+     L+ +P    +  S+L
Sbjct: 109 FSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN-QLASLP----ALPSEL 163

Query: 128 EVLRLL 133
             L   
Sbjct: 164 CKLWAY 169

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 9e-05
 Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 30/176 (17%)

Query: 23  SEIPTCP-RLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH- 80
           + +P  P  L    +  N +  +        S L  L    N  L+ LP+  S L  L  
Sbjct: 174 TSLPMLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNR-LTSLPALPSGLKELIV 228

Query: 81  ----------------HLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGF 124
                            L +S  R+  LP        L  LS+   + L+ +P   +   
Sbjct: 229 SGNRLTSLPVLPSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQ-LTRLPES-LIHL 283

Query: 125 SKLEVLRLLWCGLWS--RKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLA 178
           S    + L    L     +   E +     + P+++  +        + +LH + A
Sbjct: 284 SSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 52.7 bits (126), Expect = 6e-08
 Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 10/116 (8%)

Query: 26  PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSL----HH 81
                L    +  N +  + +       SL  L +  NL L  LP+              
Sbjct: 157 ELPTSLEVLSVRNNQLTFLPE----LPESLEALDVSTNL-LESLPAVPVRNHHSEETEIF 211

Query: 82  LDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL 137
                 RI  +P+ + +L+    + LE    LS    + +S  +            
Sbjct: 212 FRCRENRITHIPENILSLDPTCTIILEDNP-LSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 18/116 (15%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHH 81
           P  +P  P++    +  N +  + +      +SL  L    N  LS LP   ++L    H
Sbjct: 75  PDNLP--PQITVLEITQNALISLPE----LPASLEYLDACDNR-LSTLPELPASLK---H 124

Query: 82  LDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL 137
           LD+   ++  LP+       L Y++ +  + L+++P       + LEVL +    L
Sbjct: 125 LDVDNNQLTMLPELPA---LLEYINADNNQ-LTMLPELP----TSLEVLSVRNNQL 172

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 15/114 (13%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHH 81
           P    +   L    +D N +  + +      + L  ++   N  L+ LP   ++   L  
Sbjct: 116 PELPASLKHL---DVDNNQLTMLPE----LPALLEYINADNNQ-LTMLPELPTS---LEV 164

Query: 82  LDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWC 135
           L +   ++  LP+     E L  L +     L  +P   +      E      C
Sbjct: 165 LSVRNNQLTFLPEL---PESLEALDVSTNL-LESLPAVPVRNHHSEETEIFFRC 214

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.0 bits (93), Expect = 7e-04
 Identities = 22/138 (15%), Positives = 43/138 (31%), Gaps = 14/138 (10%)

Query: 23  SEIPTCP-RLVTFLLDGNWIEEITDGFFR---SMSSLRVLSLRRNLALSKLPSGISNLVS 78
           + +P  P  L    +  N +E +     R   S  +      R N  ++ +P  I +L  
Sbjct: 173 TFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCREN-RITHIPENILSLDP 231

Query: 79  LHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWC--- 135
              + L    +    +E  + +  +        + S+   Q  +    L      W    
Sbjct: 232 TCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPEN 291

Query: 136 ------GLWSRKEQEEGS 147
                  +W   E EE +
Sbjct: 292 KQSDVSQIWHAFEHEEHA 309

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 12/117 (10%)

Query: 22  PSEIPTCPRLVTFL-LDGNWIEEI-TDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVS 78
           P +IP      T L L+ N +  I +DG F  +  L  L L+RN  L+ +          
Sbjct: 24  PRDIPLH---TTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASH 79

Query: 79  LHHLDLSWTRIRGLPQEL-KALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLW 134
           +  L L   +I+ +  ++   L +L+ L+L     +S +       F  L  L  L 
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLY-DNQISCVMP---GSFEHLNSLTSLN 132

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 25/142 (17%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRN------ 63
           +  +   + IQS + +     L    L  N I +++    + ++ L  LS+ RN      
Sbjct: 44  QNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNLN 101

Query: 64  ----LALSKL---------PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGT 110
                 LS+L            + +L +L  L +   +++ +   L  L KL  L L G 
Sbjct: 102 GIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN 160

Query: 111 RHLSIIPHQLISGFSKLEVLRL 132
              +      ++   K+  + L
Sbjct: 161 EITNTGG---LTRLKKVNWIDL 179

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 9/123 (7%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
            + +L K  +           +  F  D + I+ +     +  ++L+ L L  N  +S L
Sbjct: 22  VKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQ-ISDL 78

Query: 70  PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEV 129
            S + +L  L  L ++  R++ L   + +   L  L L+            +     LE+
Sbjct: 79  -SPLKDLTKLEELSVNRNRLKNLN-GIPSA-CLSRLFLDNNELRDTDS---LIHLKNLEI 132

Query: 130 LRL 132
           L +
Sbjct: 133 LSI 135

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 8/118 (6%)

Query: 19  IQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVS 78
           I+  ++     R     L G  I  I +    ++     +    N  + KL  G   L  
Sbjct: 9   IEQAAQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNE-IRKL-DGFPLLRR 65

Query: 79  LHHLDLSWTRIRGLPQEL-KALEKLRYLSLEGTR--HLSIIPHQLISGFSKLEVLRLL 133
           L  L ++  RI  + + L +AL  L  L L       L  +    ++    L  L +L
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP--LASLKSLTYLCIL 121

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 22/100 (22%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
             I      I+     P   RL T L++ N I  I +G  +++  L  L L  N      
Sbjct: 45  DAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS----- 99

Query: 70  PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEG 109
              +  L  L                L +L+ L YL +  
Sbjct: 100 ---LVELGDLDP--------------LASLKSLTYLCILR 122

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 33  TFL-LDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWTRIR 90
           T+L LD N ++ ++ G F  ++ L  L L  N  L+ LP G+  +L  L  L L   +++
Sbjct: 62  TWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLK 120

Query: 91  GLPQEL-KALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            LP  +   L KL+ L L  T  L  IP       + L+ L L
Sbjct: 121 SLPSGVFDRLTKLKELRL-NTNQLQSIPAGAFDKLTNLQTLSL 162

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 8/114 (7%)

Query: 22  PSEIPTCPRLVTFL-LDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSL 79
           P+ IP+     T L L+ N ++ +  G F  ++ L  LSL +N  +  LP G+   L  L
Sbjct: 23  PTGIPSS---ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKL 78

Query: 80  HHLDLSWTRIRGLPQEL-KALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
             L L   +++ LP  +   L +L+ L+L+ T  L  +P  +    + L+ + L
Sbjct: 79  TILYLHENKLQSLPNGVFDKLTQLKELALD-TNQLKSVPDGIFDRLTSLQKIWL 131

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 5/102 (4%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
           K ++L    I+  S +     L    L  N I++I +       +L  L +  N  ++ L
Sbjct: 51  KHLALSTNNIEKISSLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYN-QIASL 108

Query: 70  PSGISNLVSLHHLDLSWTRIRGLP--QELKALEKLRYLSLEG 109
            SGI  LV+L  L +S  +I       +L AL+KL  L L G
Sbjct: 109 -SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 27  TCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSW 86
           T        L  N IE+I+      M +LR+LSL RNL + K+ +  +   +L  L +S+
Sbjct: 46  TLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISY 102

Query: 87  TRIRGLPQELKALEKLRYLSLEGTR--HLSIIPHQLISGFSKLEVLRL 132
            +I  L   ++ L  LR L +   +  +   I    ++   KLE L L
Sbjct: 103 NQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDK--LAALDKLEDLLL 147

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 9/101 (8%)

Query: 36  LDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQE 95
                IE++ D    ++ + + L+L  N  + K+ S +S + +L  L L    I+ +   
Sbjct: 32  GMIPPIEKM-DATLSTLKACKHLALSTNN-IEKI-SSLSGMENLRILSLGRNLIKKIENL 88

Query: 96  LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCG 136
               + L  L +   +    I    +SG  KL  LR+L+  
Sbjct: 89  DAVADTLEELWISYNQ----IAS--LSGIEKLVNLRVLYMS 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 22/100 (22%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
           + +S +  G+ S + +P   +L    L  N +    +       +L  L+L  N      
Sbjct: 45  EFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK----- 99

Query: 70  PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEG 109
              I +L ++                LK LE L+ L L  
Sbjct: 100 ---IKDLSTIEP--------------LKKLENLKSLDLFN 122

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 24  EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLD 83
           ++     L     D N I ++          L  L    N  L+++   ++ L  L + D
Sbjct: 186 DVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFD 239

Query: 84  LSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            S   +  L   +  L KL  L    T  L  I    ++  ++L   + 
Sbjct: 240 CSVNPLTELD--VSTLSKLTTLHCIQT-DLLEID---LTHNTQLIYFQA 282

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 31  LVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIR 90
             + +     ++         +++L  L    + +++ +  GI  L  L  L  +   I 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNNIT 77

Query: 91  GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
            L   L     L YL+ +  + L+ +    ++  +KL  L  
Sbjct: 78  TLD--LSQNTNLTYLACDSNK-LTNLD---VTPLTKLTYLNC 113

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 11/106 (10%)

Query: 27  TCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSW 86
           T  +L T       + EI        + L          + +L   +++   L+ LD   
Sbjct: 252 TLSKLTTLHCIQTDLLEID---LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQA 306

Query: 87  TRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
             I  L   L    KL YL L  T  L+ +    +S  +KL+ L  
Sbjct: 307 AGITELD--LSQNPKLVYLYLNNTE-LTELD---VSHNTKLKSLSC 346

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 7/100 (7%)

Query: 21  SPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH 80
              ++    +L         I E+          L  L L     L++L   +S+   L 
Sbjct: 289 KELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTE-LTELD--VSHNTKLK 342

Query: 81  HLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQL 120
            L      I+     +  +  L        + +++    L
Sbjct: 343 SLSCVNAHIQDFS-SVGKIPALNNNFEAEGQTITMPKETL 381

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 38/256 (14%), Positives = 82/256 (32%), Gaps = 41/256 (16%)

Query: 25  IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDL 84
           +    +L     D N + ++          L  L+  RN  L+++   +S+   L  LD 
Sbjct: 102 VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDC 155

Query: 85  SWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQE 144
              +      ++    +L  L       ++ +    +S    L  L      +       
Sbjct: 156 HLNKKITKL-DVTPQTQLTTLDCSFN-KITELD---VSQNKLLNRLNCDTNNI------- 203

Query: 145 EGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPP 204
                    +  + + + L  L+  S +  + + V       +L           C   P
Sbjct: 204 --------TKLDLNQNIQLTFLD-CSSNKLTEIDVTPL---TQLTYFD-------CSVNP 244

Query: 205 LNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTW 264
           L  L ++ +  L  L  + +DL E+ +    ++      G R +  + V +  +   L  
Sbjct: 245 LTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQ---LYL 301

Query: 265 LVFAQN-LKELRIDSC 279
           L      + EL +   
Sbjct: 302 LDCQAAGITELDLSQN 317

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 6/112 (5%)

Query: 28  CPRLVTFLLDGNWIEEITDGFFRSMSS----LRVLSLRRNLALSKLPSGISNLVSLHHLD 83
           C  LV+  +     E +    F   ++        SL  ++ + +    +     L  L 
Sbjct: 219 CRSLVS--VKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG 276

Query: 84  LSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWC 135
           LS+     +P       ++R L L      +     LI     LEVL     
Sbjct: 277 LSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV 328

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 45/291 (15%), Positives = 85/291 (29%), Gaps = 52/291 (17%)

Query: 28  CPRLVTFLLDGNWIEEITDGFFRSMSS----LRVLSLRR----NLALSKLPSGISNLVSL 79
            PR   F L           +   +S+    L+ +  RR    +L L +L    +    L
Sbjct: 83  KPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAK--ARADDL 140

Query: 80  HHLDLSWTRI---RGLPQELKALEKLRYLSLEGTRHLSIIPHQLIS---GFSKLEVLRLL 133
             L L         GL   +    K++ L +E +         L       + LEVL   
Sbjct: 141 ETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFY 200

Query: 134 WCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNV---LSWSLHSSLAVQKFLKYPKLLS 190
                         +   D E + +    L  + V       L         L+     S
Sbjct: 201 MTEFAK--------ISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252

Query: 191 ITQSVGVYFCQSPPLNVLHL-----------------AYMENLQELVILNSDLEEMKIDS 233
           + + +G+       +    L                  +   +++L     DL    +++
Sbjct: 253 LNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL-----DLLYALLET 307

Query: 234 AEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWLV-FAQNLKELRIDSCYDVE 283
            +    +      +L  +        + L  L  + + LK LRI+   D +
Sbjct: 308 EDHCTLI--QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQ 356

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 22/100 (22%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
           + +SL+  G+ S S +P  P+L    L  N I    D     + +L  L+L  N      
Sbjct: 52  EFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK----- 106

Query: 70  PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEG 109
              + ++ +L                LK LE L+ L L  
Sbjct: 107 ---LKDISTLEP--------------LKKLECLKSLDLFN 129

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 33  TFL-LDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLHHLDLSWTRIR 90
             L L  N +  +  G F S++ L VL L  N  L+ LPS +   LV L  L +   ++ 
Sbjct: 67  KELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNKLT 125

Query: 91  GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLW 134
            LP+ ++ L  L +L+L+    L  IPH     F +L  L   +
Sbjct: 126 ELPRGIERLTHLTHLALD-QNQLKSIPH---GAFDRLSSLTHAY 165

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.0 bits (101), Expect = 5e-05
 Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 11/88 (12%)

Query: 51  SMSSLRVLSLRRNLALSKLPSGIS----NLVSLHHLDLSWTRIRGLPQELKA--LEKLRY 104
              +L+VL+LR    +       S      V L  LDLS   +R            +L  
Sbjct: 199 KFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 105 LSLEGTRHLSIIPHQLISGFSKLEVLRL 132
           L+L  T  L  +P  L    +KL VL L
Sbjct: 258 LNLSFT-GLKQVPKGL---PAKLSVLDL 281

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 13/101 (12%), Positives = 33/101 (32%), Gaps = 9/101 (8%)

Query: 22  PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRR-----NLALSKLPSGISNL 76
           P+      ++       + I  I       +  +  + L +     +  L +L    +  
Sbjct: 54  PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQ 113

Query: 77  VSLHHLDLSW-TRI--RGLPQELKALEKLRYLSLEGTRHLS 114
            S+  +++     +  +G+   L     L+YL L     + 
Sbjct: 114 KSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGVK 153

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 32/154 (20%), Positives = 53/154 (34%), Gaps = 24/154 (15%)

Query: 28  CPRLVTFLLDGNWIEEITDGFFRSMS----SLRVLSLRRNLALSKLPSGISNLVSLHHLD 83
              LV+  +      E++      +     +L+ L L R + L KL + +     L  L 
Sbjct: 183 YTSLVSLNISC-LASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG 241

Query: 84  LSWTR-------IRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCG 136
                         GL   L   ++LR LS       + +P  + S  S+L  L L +  
Sbjct: 242 TGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA-VYSVCSRLTTLNLSYA- 299

Query: 137 LWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLS 170
                     +V   D   L+ +   L+ L VL 
Sbjct: 300 ----------TVQSYDLVKLLCQCPKLQRLWVLD 323

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 21/123 (17%), Positives = 35/123 (28%), Gaps = 13/123 (10%)

Query: 28  CPRLVTFLLDG-------NWIEEITDGFFRSM----SSLRVLSLRRNLALSKLPSGISNL 76
            P +  F L             E  D  F ++      LR LSL   L         +  
Sbjct: 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYA 455

Query: 77  VSLHHLDLSWTRI--RGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLW 134
             +  L +++      G+   L   + LR L +              S    +  L +  
Sbjct: 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

Query: 135 CGL 137
           C +
Sbjct: 516 CSV 518

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	298
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.91
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.91
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.91
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.9
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.9
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.9
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.9
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.9
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.9
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.9
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.9
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.89
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.89
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.88
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.88
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.88
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.87
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.87
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.85
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.84
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.83
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.83
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.83
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.82
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.82
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.81
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.81
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.81
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.81
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.81
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.79
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.78
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.77
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.74
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.74
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.74
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.73
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.69
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.68
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.68
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.67
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.67
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.64
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.64
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.63
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.63
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.6
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.6
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.54
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.46
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.44
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.44
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.43
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.39
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.38
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.35
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.31
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.3
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.26
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.25
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.22
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.18
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.02
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.96
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.9
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.78
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.66
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.63
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.59
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.55
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.54
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.48
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.42
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.3
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.01
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.6
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.19
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.79
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.44
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.59

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=5.7e-26  Score=194.22  Aligned_cols=254  Identities=19%  Similarity=0.229  Sum_probs=169.0

Q ss_pred             cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877            3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL   82 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L   82 (298)
                      ++++++|+.|++.++.+..++.+..+++|++|++++|.+..++.  +..+++|++|++++| .+..++ .+..+++|++|
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L  115 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLREL  115 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEE
T ss_pred             chhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEE
Confidence            34677888888888888888777778888888888888777665  778888888888888 777665 47778888888


Q ss_pred             eccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccc------ccccccccCchhH
Q 038877           83 DLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ------EEGSVLYDDAEPL  156 (298)
Q Consensus        83 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~------~~~~~~~~~~~~~  156 (298)
                      ++++|.+..++. +..+++|+.|++++|.....++.  +..+++|+.|++++|.+.....-      ...++........
T Consensus       116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (347)
T 4fmz_A          116 YLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI  192 (347)
T ss_dssp             ECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC
T ss_pred             ECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccc
Confidence            888888777765 77788888888888755555544  67777788887777766331000      0000000000011


Q ss_pred             HHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhh
Q 038877          157 MKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEE  236 (298)
Q Consensus       157 ~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  236 (298)
                      . .+..+++|+.++++++.......    ...+++|++|++++|.......  +..+++|++|++++|.+..+  ..+  
T Consensus       193 ~-~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~--  261 (347)
T 4fmz_A          193 S-PLASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAV--  261 (347)
T ss_dssp             G-GGGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGG--
T ss_pred             c-cccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhH--
Confidence            1 13444555555555444332222    2334567777777775544333  66777788888877766553  223  


Q ss_pred             hhccccccCCcccEEeccCCCCCCchhhhhhcCCCcEEEeecCcc
Q 038877          237 VKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYD  281 (298)
Q Consensus       237 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~L~~L~l~~c~~  281 (298)
                            ..+++|+.|++++| .+++++.+..+++|++|++.+|..
T Consensus       262 ------~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l  299 (347)
T 4fmz_A          262 ------KDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQL  299 (347)
T ss_dssp             ------TTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCC
T ss_pred             ------hcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcC
Confidence                  56788888888888 777777778888888888888854

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=5.1e-25  Score=188.32  Aligned_cols=270  Identities=15%  Similarity=0.192  Sum_probs=193.4

Q ss_pred             CCcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCC
Q 038877            1 PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH   80 (298)
Q Consensus         1 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~   80 (298)
                      |.++.+++|++|++++|.+.+++.+..+++|++|++++|.+..++.  +..+++|++|++++| .+..++. +..+++|+
T Consensus        60 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~  135 (347)
T 4fmz_A           60 QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNED-NISDISP-LANLTKMY  135 (347)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTS-CCCCCGG-GTTCTTCC
T ss_pred             hhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCC-cccCchh-hccCCcee
Confidence            3467788899999999988887778888899999999988877653  788888999999888 7777765 77788888


Q ss_pred             eeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccc------ccccccccCch
Q 038877           81 HLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ------EEGSVLYDDAE  154 (298)
Q Consensus        81 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~------~~~~~~~~~~~  154 (298)
                      +|++++|........+..+++|++|++++|. ...++.  +..+++|+.|++++|.+.....-      ....+......
T Consensus       136 ~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~  212 (347)
T 4fmz_A          136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQIT  212 (347)
T ss_dssp             EEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             EEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCC
Confidence            8888887443333346777777777777773 344443  56777777777777665431110      00111111111


Q ss_pred             hHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecch
Q 038877          155 PLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSA  234 (298)
Q Consensus       155 ~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  234 (298)
                      ... .+..+++|+.++++++.......    ...+++|++|++++|.....  ..+..+++|+.|++++|.+..+  ..+
T Consensus       213 ~~~-~~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~  283 (347)
T 4fmz_A          213 DIT-PVANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVL  283 (347)
T ss_dssp             CCG-GGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGG
T ss_pred             CCc-hhhcCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhh
Confidence            111 27788999999999987765443    34557899999999976553  4688899999999999988764  233


Q ss_pred             hhhhccccccCCcccEEeccCCCCCCchh--hhhhcCCCcEEEeecCcccccccccCccccccc
Q 038877          235 EEVKKLFRSGFRSLNTVSVDYCQKAKDLT--WLVFAQNLKELRIDSCYDVEEIISVDKLSDISE  296 (298)
Q Consensus       235 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~  296 (298)
                              ..+++|+.|++++| .+++..  .+..+++|++|++++|+ ++.++.......+..
T Consensus       284 --------~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~  337 (347)
T 4fmz_A          284 --------NNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDS  337 (347)
T ss_dssp             --------GGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSE
T ss_pred             --------cCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccce
Confidence                    57899999999999 666543  46789999999999996 666655555544443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=5.7e-25  Score=195.93  Aligned_cols=260  Identities=20%  Similarity=0.200  Sum_probs=117.6

Q ss_pred             CCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeee
Q 038877            7 EGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLD   83 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~   83 (298)
                      ++++.|++++|.+..++  .+..+++|++|++++|.+..+.+..+..+++|++|++++| .+..+|. .+..+++|++|+
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEE
Confidence            34555666665555532  2355556666666655555443333555556666666555 4554443 345555555555


Q ss_pred             ccCCccccc-chhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccc--------ccccccccC-c
Q 038877           84 LSWTRIRGL-PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ--------EEGSVLYDD-A  153 (298)
Q Consensus        84 l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------~~~~~~~~~-~  153 (298)
                      +++|.+..+ +..+..+++|++|++++|.. ..++...+.++++|+.|++++|.+......        ....+.... .
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTC-CEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             CCCCccccCChhHccccccCCEEECCCCcc-ceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence            555555533 33455555555555555532 222222245555555555555544220000        000000000 1


Q ss_pred             hhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecc
Q 038877          154 EPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDS  233 (298)
Q Consensus       154 ~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  233 (298)
                      ......+..+++|+.|+++++....  .++.......+|+.|++++|.........+..+++|+.|++++|.+..+....
T Consensus       190 ~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  267 (477)
T 2id5_A          190 AIRDYSFKRLYRLKVLEISHWPYLD--TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM  267 (477)
T ss_dssp             EECTTCSCSCTTCCEEEEECCTTCC--EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred             EeChhhcccCcccceeeCCCCcccc--ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence            1112233444455555554433211  11111111124555566555544443344555666666666666655543333


Q ss_pred             hhhhhccccccCCcccEEeccCCCCCCchh--hhhhcCCCcEEEeecC
Q 038877          234 AEEVKKLFRSGFRSLNTVSVDYCQKAKDLT--WLVFAQNLKELRIDSC  279 (298)
Q Consensus       234 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~~~~L~~L~l~~c  279 (298)
                      +        ..+++|+.|++++| .++.+.  .+..+++|++|++.++
T Consensus       268 ~--------~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N  306 (477)
T 2id5_A          268 L--------HELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN  306 (477)
T ss_dssp             C--------TTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS
T ss_pred             c--------cccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC
Confidence            3        34445555555554 333331  2234455555555544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=6.9e-25  Score=186.29  Aligned_cols=247  Identities=18%  Similarity=0.232  Sum_probs=194.8

Q ss_pred             CCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeecc
Q 038877            7 EGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLS   85 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~   85 (298)
                      .+++.++++++.+..+|... .+.+++|++++|.+..++...+..+++|++|++++| .+..+ |..++.+++|++|+++
T Consensus        31 c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECC
Confidence            37899999998888877532 378999999999998887755899999999999999 77766 7789999999999999


Q ss_pred             CCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCC
Q 038877           86 WTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKH  165 (298)
Q Consensus        86 ~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  165 (298)
                      +|.++.+|..+.  ++|++|++++|. +..++...+.++++|+.|++++|.+..             ....+..+..+++
T Consensus       109 ~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l~~  172 (330)
T 1xku_A          109 KNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKS-------------SGIENGAFQGMKK  172 (330)
T ss_dssp             SSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCG-------------GGBCTTGGGGCTT
T ss_pred             CCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCc-------------cCcChhhccCCCC
Confidence            999988886654  789999999984 455665568999999999999998843             2334567788899


Q ss_pred             ccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccC
Q 038877          166 LNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGF  245 (298)
Q Consensus       166 L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  245 (298)
                      |+.++++++....++.     ...+.|++|++++|.........+..+++|+.|++++|.+..+....+        ..+
T Consensus       173 L~~L~l~~n~l~~l~~-----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------~~l  239 (330)
T 1xku_A          173 LSYIRIADTNITTIPQ-----GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL--------ANT  239 (330)
T ss_dssp             CCEEECCSSCCCSCCS-----SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG--------GGS
T ss_pred             cCEEECCCCccccCCc-----cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc--------cCC
Confidence            9999998887654332     122678899999887666666678888999999999998877555445        467


Q ss_pred             CcccEEeccCCCCCCchh-hhhhcCCCcEEEeecCccccccc
Q 038877          246 RSLNTVSVDYCQKAKDLT-WLVFAQNLKELRIDSCYDVEEII  286 (298)
Q Consensus       246 ~~L~~L~l~~c~~l~~l~-~l~~~~~L~~L~l~~c~~l~~~~  286 (298)
                      ++|+.|++++| .++.++ ++..+++|++|++.++ .++.++
T Consensus       240 ~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~  279 (330)
T 1xku_A          240 PHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIG  279 (330)
T ss_dssp             TTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCC
T ss_pred             CCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccC
Confidence            88999999988 677765 4667888888888887 455554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=6.5e-25  Score=186.12  Aligned_cols=221  Identities=19%  Similarity=0.252  Sum_probs=175.3

Q ss_pred             CCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEEec
Q 038877           28 CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSL  107 (298)
Q Consensus        28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l  107 (298)
                      .+++++|++++|.+..+|.. +..+++|++|++++| .+..+|..++.+++|++|++++|.+..+|..++.+++|++|++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence            46788888888888877776 667888888888888 7777888888888888888888888888888888888888888


Q ss_pred             cCCccCCCCchhhhc---------CCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccc
Q 038877          108 EGTRHLSIIPHQLIS---------GFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLA  178 (298)
Q Consensus       108 ~~~~~~~~~~~~~~~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~  178 (298)
                      ++|...+.+|.. ++         ++++|+.|++++|.+.                .++..+..+++|+.|++++|....
T Consensus       158 ~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~----------------~lp~~l~~l~~L~~L~L~~N~l~~  220 (328)
T 4fcg_A          158 RACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR----------------SLPASIANLQNLKSLKIRNSPLSA  220 (328)
T ss_dssp             EEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC----------------CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred             CCCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC----------------cchHhhcCCCCCCEEEccCCCCCc
Confidence            887777777764 33         4888999999988873                356667888899999998887654


Q ss_pred             hhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCC
Q 038877          179 VQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQK  258 (298)
Q Consensus       179 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  258 (298)
                      +   +......++|+.|++++|......+..+..+++|+.|++++|.........+        ..+++|+.|++++|..
T Consensus       221 l---~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~--------~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          221 L---GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI--------HRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             C---CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG--------GGCTTCCEEECTTCTT
T ss_pred             C---chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh--------hcCCCCCEEeCCCCCc
Confidence            3   2234456788999999987766666778899999999999998877333334        5789999999999988


Q ss_pred             CCchh-hhhhcCCCcEEEeec
Q 038877          259 AKDLT-WLVFAQNLKELRIDS  278 (298)
Q Consensus       259 l~~l~-~l~~~~~L~~L~l~~  278 (298)
                      +..+| .+..+++|+.+.+..
T Consensus       290 ~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          290 LSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             CCCCCGGGGGSCTTCEEECCG
T ss_pred             hhhccHHHhhccCceEEeCCH
Confidence            88886 578899999998875

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=1.7e-24  Score=192.37  Aligned_cols=88  Identities=24%  Similarity=0.406  Sum_probs=62.0

Q ss_pred             CcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCe
Q 038877            2 KVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHH   81 (298)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~   81 (298)
                      .+..+++|++|++++|.+.+++.+..+++|++|++++|.+..+++  +..+++|++|++++| .+..++. +..+++|++
T Consensus        63 ~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~  138 (466)
T 1o6v_A           63 GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDIDP-LKNLTNLNR  138 (466)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSE
T ss_pred             chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCChH-HcCCCCCCE
Confidence            456677777777777777776666777777777777777766555  667777777777777 6666654 667777777


Q ss_pred             eeccCCcccccc
Q 038877           82 LDLSWTRIRGLP   93 (298)
Q Consensus        82 L~l~~~~~~~l~   93 (298)
                      |++++|.+..++
T Consensus       139 L~l~~n~l~~~~  150 (466)
T 1o6v_A          139 LELSSNTISDIS  150 (466)
T ss_dssp             EEEEEEEECCCG
T ss_pred             EECCCCccCCCh
Confidence            777777666544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=6.9e-25  Score=190.52  Aligned_cols=261  Identities=15%  Similarity=0.126  Sum_probs=152.8

Q ss_pred             CCCccEEEeecCCCcCCCC--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCee
Q 038877            6 WEGAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHL   82 (298)
Q Consensus         6 ~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L   82 (298)
                      +++++++++.++.+..+|.  +..+++|++|++++|.+..++...+..+++|++|++++| .+..+ |..++.+++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEE
Confidence            4667777777777776664  356777777777777776665544677777777777777 56555 3456677777777


Q ss_pred             eccCCcccccchh-hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccc-----cc-----------
Q 038877           83 DLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ-----EE-----------  145 (298)
Q Consensus        83 ~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-----~~-----------  145 (298)
                      ++++|.++.+|.. +..+++|++|++++|.. ..++...++++++|+.|++++|.+....-.     ..           
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~  201 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL  201 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCcc-CccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccccc
Confidence            7777777766654 46777777777777743 334333467777777777777766431000     00           


Q ss_pred             --------ccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCccccccccccccc
Q 038877          146 --------GSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQ  217 (298)
Q Consensus       146 --------~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  217 (298)
                              ..+........+  ....++|+.|+++++......    .....+.|+.|++++|......+..+..+++|+
T Consensus       202 ~~~~~L~~L~l~~n~l~~~~--~~~~~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  275 (390)
T 3o6n_A          202 AIPIAVEELDASHNSINVVR--GPVNVELTILKLQHNNLTDTA----WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE  275 (390)
T ss_dssp             ECCSSCSEEECCSSCCCEEE--CCCCSSCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred             CCCCcceEEECCCCeeeecc--ccccccccEEECCCCCCcccH----HHcCCCCccEEECCCCcCCCcChhHccccccCC
Confidence                    000000000000  001123444444444333221    122335566666666655554455566667777


Q ss_pred             ceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh-hhhhcCCCcEEEeecCcccccc
Q 038877          218 ELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT-WLVFAQNLKELRIDSCYDVEEI  285 (298)
Q Consensus       218 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~~~~L~~L~l~~c~~l~~~  285 (298)
                      .|++++|.+..++...         ..+++|+.|++++| .++.++ .+..+++|++|++.+|. ++.+
T Consensus       276 ~L~L~~n~l~~~~~~~---------~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~  333 (390)
T 3o6n_A          276 RLYISNNRLVALNLYG---------QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTL  333 (390)
T ss_dssp             EEECCSSCCCEEECSS---------SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCC
T ss_pred             EEECCCCcCcccCccc---------CCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-ccee
Confidence            7777776665533211         35778888888888 666664 35677888888888774 4443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=9.1e-25  Score=194.65  Aligned_cols=267  Identities=19%  Similarity=0.176  Sum_probs=198.3

Q ss_pred             CcccCCCccEEEeecCCCcCC-C-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccC
Q 038877            2 KVEEWEGAKRISLMKTGIQSP-S-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVS   78 (298)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~   78 (298)
                      .|.++++|+.|++++|.+..+ | .+..+++|++|++++|.+..++...+..+++|++|++++| .+..+ |..+..+++
T Consensus        51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~  129 (477)
T 2id5_A           51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYN  129 (477)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTT
T ss_pred             HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC-ccccCChhHcccccc
Confidence            477889999999999988874 3 4578899999999999888888766788999999999998 66644 567888889


Q ss_pred             CCeeeccCCccccc-chhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccc--------cccccc
Q 038877           79 LHHLDLSWTRIRGL-PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ--------EEGSVL  149 (298)
Q Consensus        79 L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------~~~~~~  149 (298)
                      |++|++++|.+..+ +..+..+++|+.|++++| .+..++...+.++++|+.|++++|.+......        ....+.
T Consensus       130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  208 (477)
T 2id5_A          130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS  208 (477)
T ss_dssp             CCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEE
T ss_pred             CCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCC
Confidence            99999988888754 356788888888888888 44556655578888888888888776432111        000110


Q ss_pred             cc-CchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcce
Q 038877          150 YD-DAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE  228 (298)
Q Consensus       150 ~~-~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  228 (298)
                      .. ....++.......+|+.|+++++....+..  .....+++|+.|++++|.........+..+++|+.|++++|.+..
T Consensus       209 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  286 (477)
T 2id5_A          209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY--LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV  286 (477)
T ss_dssp             CCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH--HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE
T ss_pred             CCccccccCcccccCccccEEECcCCcccccCH--HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce
Confidence            00 012223333444589999999987654331  123345789999999998776666678899999999999999888


Q ss_pred             eeecchhhhhccccccCCcccEEeccCCCCCCchhh--hhhcCCCcEEEeecCcc
Q 038877          229 MKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTW--LVFAQNLKELRIDSCYD  281 (298)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~~~~L~~L~l~~c~~  281 (298)
                      +....+        ..+++|+.|++++| .++.++.  +..+++|++|++.+++-
T Consensus       287 ~~~~~~--------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          287 VEPYAF--------RGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             ECTTTB--------TTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             ECHHHh--------cCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCc
Confidence            655555        57899999999999 7887753  46789999999988753

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=1.5e-24  Score=192.12  Aligned_cols=131  Identities=21%  Similarity=0.286  Sum_probs=83.2

Q ss_pred             CCccEEEeecCCCcCC-C-CCCCCCcccEEEecCCccc-ccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCee
Q 038877            7 EGAKRISLMKTGIQSP-S-EIPTCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHL   82 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L   82 (298)
                      ++|++|++++|.+.++ | .+..+++|++|++++|.+. .++...+..+++|++|++++| .+..+ |..++.+++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEE
Confidence            4577777777777663 3 3466777777777777654 554444667777777777777 55543 5566777777777


Q ss_pred             eccCCcccc-cchh--hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCc
Q 038877           83 DLSWTRIRG-LPQE--LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLW  138 (298)
Q Consensus        83 ~l~~~~~~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  138 (298)
                      ++++|.++. .+..  +..+++|++|++++|...+..|..++.++++|+.|++++|.+.
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            777776663 3332  6667777777777764444444444566677777777666653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.92  E-value=1.5e-24  Score=184.43  Aligned_cols=245  Identities=18%  Similarity=0.212  Sum_probs=179.2

Q ss_pred             CCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeecc
Q 038877            7 EGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLS   85 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~   85 (298)
                      ++++.++++++.+..+|... .+++++|++++|.+..+++..+..+++|++|++++| .+..+ |..++.+++|++|+++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECC
T ss_pred             ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECC
Confidence            47899999999998887542 478999999999998777655899999999999999 77766 7789999999999999


Q ss_pred             CCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCC
Q 038877           86 WTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKH  165 (298)
Q Consensus        86 ~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  165 (298)
                      +|.++.+|..+.  ++|++|++++|. +..++...+.++++|+.|++++|.+..             ....+..+..+ +
T Consensus       111 ~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l-~  173 (332)
T 2ft3_A          111 KNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLEN-------------SGFEPGAFDGL-K  173 (332)
T ss_dssp             SSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBG-------------GGSCTTSSCSC-C
T ss_pred             CCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCcccc-------------CCCCcccccCC-c
Confidence            999998887665  899999999994 556666568999999999999998842             12234445555 7


Q ss_pred             ccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccC
Q 038877          166 LNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGF  245 (298)
Q Consensus       166 L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  245 (298)
                      |+.++++++....++.     ...+.|+.|++++|.........+..+++|+.|++++|.+..+....+        ..+
T Consensus       174 L~~L~l~~n~l~~l~~-----~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~--------~~l  240 (332)
T 2ft3_A          174 LNYLRISEAKLTGIPK-----DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL--------SFL  240 (332)
T ss_dssp             CSCCBCCSSBCSSCCS-----SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG--------GGC
T ss_pred             cCEEECcCCCCCccCc-----cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh--------hCC
Confidence            7777777766544322     112566777777776655555566777777777777777666444334        456


Q ss_pred             CcccEEeccCCCCCCchh-hhhhcCCCcEEEeecCcccccc
Q 038877          246 RSLNTVSVDYCQKAKDLT-WLVFAQNLKELRIDSCYDVEEI  285 (298)
Q Consensus       246 ~~L~~L~l~~c~~l~~l~-~l~~~~~L~~L~l~~c~~l~~~  285 (298)
                      ++|+.|++++| .++.++ .+..+++|++|++.++ .++.+
T Consensus       241 ~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~  279 (332)
T 2ft3_A          241 PTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKV  279 (332)
T ss_dssp             TTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBC
T ss_pred             CCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCcc
Confidence            77777777776 566654 3556677777777765 34444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=2.1e-24  Score=185.02  Aligned_cols=254  Identities=19%  Similarity=0.203  Sum_probs=136.2

Q ss_pred             CccEEEeecCCCcCCCC--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCcc-ccCccCCCeeec
Q 038877            8 GAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSLHHLDL   84 (298)
Q Consensus         8 ~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l   84 (298)
                      +|++|++++|.+..++.  +..+++|++|++++|.+..+++..+..+++|++|++++| .++.+|.. ++.+++|++|++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEEC
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEEC
Confidence            55666666665555432  355566666666666555444333555566666666666 55555443 555566666666


Q ss_pred             cCCcccccch--hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcC
Q 038877           85 SWTRIRGLPQ--ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLG  162 (298)
Q Consensus        85 ~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  162 (298)
                      ++|.++.++.  .+..+++|++|++++|...+.++...++++++|+.|++++|.+.               ...+..+..
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~---------------~~~~~~l~~  196 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ---------------SYEPKSLKS  196 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC---------------EECTTTTTT
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC---------------ccCHHHHhc
Confidence            6665555554  45556666666665553334443333555666666666665552               223444555


Q ss_pred             CCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccc---cccccccceecccCCcceeeecchhhhhc
Q 038877          163 LKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHL---AYMENLQELVILNSDLEEMKIDSAEEVKK  239 (298)
Q Consensus       163 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  239 (298)
                      +++|+.++++++........  .....+.|+.|++++|.........+   ...+.++.+++.++.+.......+.  . 
T Consensus       197 l~~L~~L~l~~n~l~~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~--~-  271 (353)
T 2z80_A          197 IQNVSHLILHMKQHILLLEI--FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM--K-  271 (353)
T ss_dssp             CSEEEEEEEECSCSTTHHHH--HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH--H-
T ss_pred             cccCCeecCCCCccccchhh--hhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH--H-
Confidence            56666666665554322211  11223556666666665433322221   1233444455544443331111110  0 


Q ss_pred             cccccCCcccEEeccCCCCCCchhh--hhhcCCCcEEEeecCccccc
Q 038877          240 LFRSGFRSLNTVSVDYCQKAKDLTW--LVFAQNLKELRIDSCYDVEE  284 (298)
Q Consensus       240 ~~~~~~~~L~~L~l~~c~~l~~l~~--l~~~~~L~~L~l~~c~~l~~  284 (298)
                       .-..+++|+.|++++| .++.++.  +..+++|++|++.+++-.-+
T Consensus       272 -~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          272 -LLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             -HHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             -HHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence             0146789999999998 7777764  36789999999998864433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.92  E-value=1.6e-24  Score=182.05  Aligned_cols=243  Identities=18%  Similarity=0.161  Sum_probs=149.1

Q ss_pred             cEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC---CccccCccCCCeeeccC
Q 038877           10 KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL---PSGISNLVSLHHLDLSW   86 (298)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---p~~~~~l~~L~~L~l~~   86 (298)
                      +.++++++.++.+|.. -.+++++|++++|.+..++..++..+++|++|++++| .+...   |..+..+++|++|++++
T Consensus        10 ~~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             TEEECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             CEEEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCC
Confidence            4566666666666542 2356777777777776666655667777777777777 55533   44555667777777777


Q ss_pred             CcccccchhhcCCCcccEEeccCCccCCCCch-hhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCC
Q 038877           87 TRIRGLPQELKALEKLRYLSLEGTRHLSIIPH-QLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKH  165 (298)
Q Consensus        87 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  165 (298)
                      |.+..++..+..+++|++|++++|.. ..++. ..+.++++|+.|++++|.+.               ...+..+..+++
T Consensus        88 n~i~~l~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~---------------~~~~~~~~~l~~  151 (306)
T 2z66_A           88 NGVITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTR---------------VAFNGIFNGLSS  151 (306)
T ss_dssp             CSEEEEEEEEETCTTCCEEECTTSEE-ESSTTTTTTTTCTTCCEEECTTSCCE---------------ECSTTTTTTCTT
T ss_pred             CccccChhhcCCCCCCCEEECCCCcc-cccccchhhhhccCCCEEECCCCcCC---------------ccchhhcccCcC
Confidence            77766666667777777777777633 33332 23667777777777777662               233445566677


Q ss_pred             ccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccC
Q 038877          166 LNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGF  245 (298)
Q Consensus       166 L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  245 (298)
                      |+.|+++++.... ...+......++|+.|++++|.........+..+++|+.|++++|.+..++...+        ..+
T Consensus       152 L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--------~~l  222 (306)
T 2z66_A          152 LEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY--------KCL  222 (306)
T ss_dssp             CCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG--------TTC
T ss_pred             CCEEECCCCcccc-ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc--------cCc
Confidence            7777776654322 0122233444667777777776555555556667777777777777665433333        456


Q ss_pred             CcccEEeccCCCCCCchh--hhhhcC-CCcEEEeecCc
Q 038877          246 RSLNTVSVDYCQKAKDLT--WLVFAQ-NLKELRIDSCY  280 (298)
Q Consensus       246 ~~L~~L~l~~c~~l~~l~--~l~~~~-~L~~L~l~~c~  280 (298)
                      ++|+.|++++| .++...  .+..+| +|++|++.+++
T Consensus       223 ~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          223 NSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             TTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             ccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCCC
Confidence            77777777777 444432  234453 67777777654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.92  E-value=5.4e-24  Score=199.90  Aligned_cols=258  Identities=19%  Similarity=0.224  Sum_probs=183.7

Q ss_pred             CCCccEEEeecCCCcC-CC-CCCCCCcccEEEecCCccc-ccCchHHhcCCCccEEEccCCcCCc-cCCccccCccCCCe
Q 038877            6 WEGAKRISLMKTGIQS-PS-EIPTCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALS-KLPSGISNLVSLHH   81 (298)
Q Consensus         6 ~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~   81 (298)
                      +++|+.|++++|.+.+ +| .+..+++|++|++++|.+. .+|.. +..+++|++|++++| .+. .+|..+..+++|++
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~  470 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLET  470 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEECCCC-cccCcCCHHHcCCCCceE
Confidence            4566666666666654 44 3466777777777777666 34443 677777777777777 444 56767777777777


Q ss_pred             eeccCCccc-ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh
Q 038877           82 LDLSWTRIR-GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL  160 (298)
Q Consensus        82 L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  160 (298)
                      |++++|.+. .+|..+..+++|++|++++|...+.+|.. ++++++|+.|++++|.+               .+..+..+
T Consensus       471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l---------------~~~~p~~l  534 (768)
T 3rgz_A          471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSF---------------SGNIPAEL  534 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCC---------------EEECCGGG
T ss_pred             EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCcc---------------cCcCCHHH
Confidence            777777766 56677777777777777777665566664 77777788888877777               44567778


Q ss_pred             cCCCCccEEEEEecCcc-chhh-h--------------------------------------------------------
Q 038877          161 LGLKHLNVLSWSLHSSL-AVQK-F--------------------------------------------------------  182 (298)
Q Consensus       161 ~~l~~L~~l~l~~~~~~-~~~~-~--------------------------------------------------------  182 (298)
                      ..+++|+.+++++|... .++. +                                                        
T Consensus       535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  614 (768)
T 3rgz_A          535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN  614 (768)
T ss_dssp             GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred             cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence            88888999988876543 1110 0                                                        


Q ss_pred             ----------ccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEe
Q 038877          183 ----------LKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVS  252 (298)
Q Consensus       183 ----------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  252 (298)
                                +......+.++.|++++|......+..++.++.|+.|++++|.+....+..+        ..+++|+.|+
T Consensus       615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l--------~~L~~L~~Ld  686 (768)
T 3rgz_A          615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV--------GDLRGLNILD  686 (768)
T ss_dssp             TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--------GGCTTCCEEE
T ss_pred             cccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH--------hCCCCCCEEE
Confidence                      0011223568899999998777777889999999999999999987333444        5789999999


Q ss_pred             ccCCCCCC-chh-hhhhcCCCcEEEeecCcccccccccCc
Q 038877          253 VDYCQKAK-DLT-WLVFAQNLKELRIDSCYDVEEIISVDK  290 (298)
Q Consensus       253 l~~c~~l~-~l~-~l~~~~~L~~L~l~~c~~l~~~~~~~~  290 (298)
                      +++| .++ .+| .+..++.|++|++++++--..+|....
T Consensus       687 Ls~N-~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~  725 (768)
T 3rgz_A          687 LSSN-KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ  725 (768)
T ss_dssp             CCSS-CCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSS
T ss_pred             CCCC-cccCcCChHHhCCCCCCEEECcCCcccccCCCchh
Confidence            9999 555 454 467899999999999976666665443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.92  E-value=2.7e-25  Score=187.37  Aligned_cols=246  Identities=15%  Similarity=0.150  Sum_probs=145.5

Q ss_pred             CCccEEEeecCCCcC---CC-CCCCCCcccEEEecC-Cccc-ccCchHHhcCCCccEEEccCCcCCc-cCCccccCccCC
Q 038877            7 EGAKRISLMKTGIQS---PS-EIPTCPRLVTFLLDG-NWIE-EITDGFFRSMSSLRVLSLRRNLALS-KLPSGISNLVSL   79 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~---~~-~~~~~~~L~~L~l~~-~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~p~~~~~l~~L   79 (298)
                      .+++.|+++++.+.+   +| .+..+++|++|++++ |.+. .+|.. +..+++|++|++++| .+. .+|..+..+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGGGCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeCCcCCHHHhCCCCC
Confidence            356667777766653   44 346667777777764 5554 44444 666777777777776 554 556666667777


Q ss_pred             CeeeccCCccc-ccchhhcCCCcccEEeccCCccCCCCchhhhcCCC-cccEEEeeccCCccccccccccccccCchhHH
Q 038877           80 HHLDLSWTRIR-GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFS-KLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLM  157 (298)
Q Consensus        80 ~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  157 (298)
                      ++|++++|.+. .+|..+..+++|++|++++|...+.+|.. ++.++ +|+.|++++|.+.               ...+
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~---------------~~~~  191 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLT---------------GKIP  191 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEE---------------EECC
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeee---------------ccCC
Confidence            77777777666 56666667777777777776444455654 56665 6777777776662               2344


Q ss_pred             HhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhh
Q 038877          158 KELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEV  237 (298)
Q Consensus       158 ~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  237 (298)
                      ..+..++ |+.|+++++.....  .+......+.|+.|++++|....... .+..+++|++|++++|.+.......+   
T Consensus       192 ~~~~~l~-L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l---  264 (313)
T 1ogq_A          192 PTFANLN-LAFVDLSRNMLEGD--ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL---  264 (313)
T ss_dssp             GGGGGCC-CSEEECCSSEEEEC--CGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGG---
T ss_pred             hHHhCCc-ccEEECcCCcccCc--CCHHHhcCCCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccCcCChHH---
Confidence            4455554 67777666554321  12223334566666666665432222 25556667777777666654222333   


Q ss_pred             hccccccCCcccEEeccCCCCCC-chhhhhhcCCCcEEEeecCcccc
Q 038877          238 KKLFRSGFRSLNTVSVDYCQKAK-DLTWLVFAQNLKELRIDSCYDVE  283 (298)
Q Consensus       238 ~~~~~~~~~~L~~L~l~~c~~l~-~l~~l~~~~~L~~L~l~~c~~l~  283 (298)
                           ..+++|+.|++++| .++ .+|....+++|+++++.+++.+.
T Consensus       265 -----~~l~~L~~L~Ls~N-~l~~~ip~~~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          265 -----TQLKFLHSLNVSFN-NLCGEIPQGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             -----GGCTTCCEEECCSS-EEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred             -----hcCcCCCEEECcCC-cccccCCCCccccccChHHhcCCCCcc
Confidence                 35666777777766 333 44444556666666666665444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=1.3e-23  Score=186.54  Aligned_cols=252  Identities=18%  Similarity=0.213  Sum_probs=117.0

Q ss_pred             cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-----------
Q 038877            3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-----------   71 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-----------   71 (298)
                      +.++++|++|++++|.+..++.+..+++|++|++++|.+..++.  +..+++|++|++++| .+..++.           
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~  162 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN-TISDISALSGLTSLQQLS  162 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEE-EECCCGGGTTCTTCSEEE
T ss_pred             hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCC-ccCCChhhccCCcccEee
Confidence            45556666666666666555445556666666666665554443  455555555555555 3332211           


Q ss_pred             ---------cccCccCCCeeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccc
Q 038877           72 ---------GISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKE  142 (298)
Q Consensus        72 ---------~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  142 (298)
                               .+..+++|++|++++|.+..++ .+..+++|++|++++|.. ...+.  ++.+++|+.|++++|.+.....
T Consensus       163 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~l~~n~l~~~~~  238 (466)
T 1o6v_A          163 FGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQI-SDITP--LGILTNLDELSLNGNQLKDIGT  238 (466)
T ss_dssp             EEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC-CCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred             cCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcc-ccccc--ccccCCCCEEECCCCCcccchh
Confidence                     1445556666666666555543 245555666666665532 22222  3445555555555554422000


Q ss_pred             c------ccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccc
Q 038877          143 Q------EEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENL  216 (298)
Q Consensus       143 ~------~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L  216 (298)
                      -      ...++......... .+..+++|+.|+++++.......    ...++.|+.|++++|......  .+..+++|
T Consensus       239 l~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L  311 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDIS--PISNLKNL  311 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCSCCG--GGGGCTTC
T ss_pred             hhcCCCCCEEECCCCccccch-hhhcCCCCCEEECCCCccCcccc----ccCCCccCeEEcCCCcccCch--hhcCCCCC
Confidence            0      00000000000011 14445555555555554433222    122344555555555433222  14455555


Q ss_pred             cceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchhhhhhcCCCcEEEeecC
Q 038877          217 QELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSC  279 (298)
Q Consensus       217 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~L~~L~l~~c  279 (298)
                      +.|++++|.+.....  +        ..+++|+.|++++| .+++++.+..+++|++|++.+|
T Consensus       312 ~~L~L~~n~l~~~~~--~--------~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n  363 (466)
T 1o6v_A          312 TYLTLYFNNISDISP--V--------SSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHN  363 (466)
T ss_dssp             SEEECCSSCCSCCGG--G--------GGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred             CEEECcCCcCCCchh--h--------ccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCC
Confidence            555555555444211  1        24455555555555 4444444444555555555544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.91  E-value=3.8e-24  Score=196.06  Aligned_cols=253  Identities=18%  Similarity=0.144  Sum_probs=163.9

Q ss_pred             cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCch-------------------HHhcCCCccEEEccCC
Q 038877            3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDG-------------------FFRSMSSLRVLSLRRN   63 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------------------~~~~~~~L~~L~l~~~   63 (298)
                      +..+++|+.|++.++.+..+|.+..+++|++|++++|.++.+|..                   .+..+++|++|++++|
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n  360 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN  360 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSS
T ss_pred             cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCC
Confidence            344455555555555555554444455555555555544433310                   1345566666666666


Q ss_pred             cCCccC---CccccCccCCCeeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccc
Q 038877           64 LALSKL---PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSR  140 (298)
Q Consensus        64 ~~~~~~---p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  140 (298)
                       .+...   |..+..+++|++|++++|.+..+|..+..+++|+.|++++|...+..+...+.++++|+.|++++|.+   
T Consensus       361 -~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l---  436 (606)
T 3vq2_A          361 -ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT---  436 (606)
T ss_dssp             -CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC---
T ss_pred             -ccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC---
Confidence             44433   55566677777777777766666666777777777777777544444423367777777777777776   


Q ss_pred             cccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCccccccccccccccee
Q 038877          141 KEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELV  220 (298)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  220 (298)
                                  ....+..+..+++|+.|+++++.... ...+.....+++|++|++++|......+..+..+++|+.|+
T Consensus       437 ------------~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  503 (606)
T 3vq2_A          437 ------------KIDFDGIFLGLTSLNTLKMAGNSFKD-NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN  503 (606)
T ss_dssp             ------------EECCTTTTTTCTTCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             ------------CccchhhhcCCCCCCEEECCCCcCCC-cchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence                        33455667778888888887775432 11233445567888888888876666666788888899999


Q ss_pred             cccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchhh-hhhcC-CCcEEEeecCcc
Q 038877          221 ILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTW-LVFAQ-NLKELRIDSCYD  281 (298)
Q Consensus       221 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-l~~~~-~L~~L~l~~c~~  281 (298)
                      +++|.+.......+        ..+++|+.|++++| .++.++. +..++ +|++|++.+++-
T Consensus       504 Ls~N~l~~~~~~~~--------~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          504 MSHNNLLFLDSSHY--------NQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             CCSSCCSCEEGGGT--------TTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred             CCCCcCCCcCHHHc--------cCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence            98888877555555        56888999999988 6777753 56676 589999888653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.91  E-value=2.4e-24  Score=190.68  Aligned_cols=269  Identities=14%  Similarity=0.126  Sum_probs=173.7

Q ss_pred             CcccCCCccEEEeecCCCcC-CC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCcc-CCcc--ccC
Q 038877            2 KVEEWEGAKRISLMKTGIQS-PS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSK-LPSG--ISN   75 (298)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~~-~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~p~~--~~~   75 (298)
                      .++++++|++|++++|.+.. ++  .+..+++|++|++++|.+..+.+..+..+++|++|++++| .+.. .|..  ++.
T Consensus        49 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~  127 (455)
T 3v47_A           49 SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC-NLDGAVLSGNFFKP  127 (455)
T ss_dssp             TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS-CCBTHHHHSSTTTT
T ss_pred             HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC-CCCccccCcccccC
Confidence            47889999999999998864 43  3588999999999999988665544889999999999999 6663 3433  888


Q ss_pred             ccCCCeeeccCCccccc-chh-hcCCCcccEEeccCCccCCCCchhhhc-------------------------------
Q 038877           76 LVSLHHLDLSWTRIRGL-PQE-LKALEKLRYLSLEGTRHLSIIPHQLIS-------------------------------  122 (298)
Q Consensus        76 l~~L~~L~l~~~~~~~l-~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~-------------------------------  122 (298)
                      +++|++|++++|.+..+ |.. +..+++|++|++++|...+..+.. +.                               
T Consensus       128 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  206 (455)
T 3v47_A          128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG  206 (455)
T ss_dssp             CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHC
T ss_pred             cccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhccccccccccccccCcccccchhhccccccc
Confidence            99999999999988865 444 789999999999998654443332 22                               


Q ss_pred             ---CCCcccEEEeeccCCccccccc-----------------------------------------------cccccccC
Q 038877          123 ---GFSKLEVLRLLWCGLWSRKEQE-----------------------------------------------EGSVLYDD  152 (298)
Q Consensus       123 ---~l~~L~~L~l~~~~~~~~~~~~-----------------------------------------------~~~~~~~~  152 (298)
                         .+++|+.|++++|.+.......                                               ..++....
T Consensus       207 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  286 (455)
T 3v47_A          207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK  286 (455)
T ss_dssp             CTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred             cccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc
Confidence               3467899999888764311100                                               00000000


Q ss_pred             -chhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeee
Q 038877          153 -AEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKI  231 (298)
Q Consensus       153 -~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  231 (298)
                       ....+..+..+++|+.|+++++......  +......++|+.|++++|.........+..+++|+.|++++|.+..+..
T Consensus       287 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  364 (455)
T 3v47_A          287 IFALLKSVFSHFTDLEQLTLAQNEINKID--DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD  364 (455)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT
T ss_pred             ccccchhhcccCCCCCEEECCCCcccccC--hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh
Confidence             0112233455556666666555443221  1122234556666666665544444556666667777776666655444


Q ss_pred             cchhhhhccccccCCcccEEeccCCCCCCchhh--hhhcCCCcEEEeecCcccc
Q 038877          232 DSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTW--LVFAQNLKELRIDSCYDVE  283 (298)
Q Consensus       232 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~~~~L~~L~l~~c~~l~  283 (298)
                      ..+        ..+++|+.|++++| .++.++.  +..+++|++|++.+++---
T Consensus       365 ~~~--------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          365 QSF--------LGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             TTT--------TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hhc--------cccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCccc
Confidence            444        45677777777777 5666542  4567777777777664433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=9.2e-24  Score=186.25  Aligned_cols=242  Identities=17%  Similarity=0.194  Sum_probs=152.8

Q ss_pred             ccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeeeccCC
Q 038877            9 AKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLDLSWT   87 (298)
Q Consensus         9 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~   87 (298)
                      .+.++..+..++.+|... .++++.|++++|.+..++...+..+++|++|++++| .+..++ ..+..+++|++|++++|
T Consensus        45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             SCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC
Confidence            456666666666665431 256777777777776655444677777777777777 565543 45667777777777777


Q ss_pred             cccccch-hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCc
Q 038877           88 RIRGLPQ-ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHL  166 (298)
Q Consensus        88 ~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L  166 (298)
                      .++.++. .+..+++|++|++++|. +..++...+.++++|+.|++++|....              ......+..+++|
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~--------------~i~~~~~~~l~~L  187 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLS--------------YISEGAFEGLSNL  187 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCC--------------EECTTTTTTCSSC
T ss_pred             cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcc--------------eeCcchhhccccc
Confidence            7776654 46677777777777773 445554446777777777777644311              1112345566777


Q ss_pred             cEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCC
Q 038877          167 NVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFR  246 (298)
Q Consensus       167 ~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  246 (298)
                      +.|+++++....++.    ....++|+.|++++|.........+..+++|+.|++++|.+..+....+        ..++
T Consensus       188 ~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------~~l~  255 (440)
T 3zyj_A          188 RYLNLAMCNLREIPN----LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF--------DNLQ  255 (440)
T ss_dssp             CEEECTTSCCSSCCC----CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSS--------TTCT
T ss_pred             CeecCCCCcCccccc----cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhh--------cCCC
Confidence            777777665544332    2334566777777776555555567777777777777777766544444        4567


Q ss_pred             cccEEeccCCCCCCchhh--hhhcCCCcEEEeecCc
Q 038877          247 SLNTVSVDYCQKAKDLTW--LVFAQNLKELRIDSCY  280 (298)
Q Consensus       247 ~L~~L~l~~c~~l~~l~~--l~~~~~L~~L~l~~c~  280 (298)
                      +|+.|++++| .++.++.  +..+++|++|++.+++
T Consensus       256 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          256 SLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence            7777777777 5666542  3456777777776654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=1.3e-23  Score=185.80  Aligned_cols=121  Identities=18%  Similarity=0.212  Sum_probs=69.5

Q ss_pred             cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877            3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL   82 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L   82 (298)
                      ++++++|++|++++|.+.++|.+..+++|++|++++|.+..++   ++.+++|++|++++| .+..++  ++.+++|++|
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L  111 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYL  111 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEE
T ss_pred             hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCCEE
Confidence            3456666666666666666665566666666666666665543   455666666666666 555543  5556666666


Q ss_pred             eccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeecc
Q 038877           83 DLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWC  135 (298)
Q Consensus        83 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  135 (298)
                      ++++|.++.++  ++.+++|++|++++|.. ..++   ++++++|+.|++++|
T Consensus       112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N~l-~~l~---l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          112 NCDTNKLTKLD--VSQNPLLTYLNCARNTL-TEID---VSHNTQLTELDCHLN  158 (457)
T ss_dssp             ECCSSCCSCCC--CTTCTTCCEEECTTSCC-SCCC---CTTCTTCCEEECTTC
T ss_pred             ECCCCcCCeec--CCCCCcCCEEECCCCcc-ceec---cccCCcCCEEECCCC
Confidence            66666655553  55555666666655532 2222   344444555554444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.91  E-value=1.6e-24  Score=199.34  Aligned_cols=133  Identities=13%  Similarity=0.181  Sum_probs=104.7

Q ss_pred             CcccCCCccEEEeecCCCcC------------------CCCC-C--CCCcccEEEecCCccc-ccCchHHhcCCCccEEE
Q 038877            2 KVEEWEGAKRISLMKTGIQS------------------PSEI-P--TCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLS   59 (298)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~~------------------~~~~-~--~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~   59 (298)
                      .++++++|++|++++|.+++                  +|.. .  .+++|++|++++|.+. .+|.. +..+++|++|+
T Consensus       201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~  279 (636)
T 4eco_A          201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLIN  279 (636)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEE
T ss_pred             HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEE
Confidence            37788889999999988888                  7744 6  7889999999988765 66655 88888999999


Q ss_pred             ccCCcCCc--cCCccccCc------cCCCeeeccCCcccccch--hhcCCCcccEEeccCCccCCCCchhhhcCCCcccE
Q 038877           60 LRRNLALS--KLPSGISNL------VSLHHLDLSWTRIRGLPQ--ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEV  129 (298)
Q Consensus        60 l~~~~~~~--~~p~~~~~l------~~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  129 (298)
                      +++|..++  .+|..++.+      ++|++|++++|.++.+|.  .++.+++|++|++++|...+.+| . ++++++|+.
T Consensus       280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~  357 (636)
T 4eco_A          280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLAS  357 (636)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESE
T ss_pred             CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCE
Confidence            98883155  477777665      888888888888888887  78888888888888885544777 3 777788888


Q ss_pred             EEeeccCC
Q 038877          130 LRLLWCGL  137 (298)
Q Consensus       130 L~l~~~~~  137 (298)
                      |++++|.+
T Consensus       358 L~L~~N~l  365 (636)
T 4eco_A          358 LNLAYNQI  365 (636)
T ss_dssp             EECCSSEE
T ss_pred             EECCCCcc
Confidence            88887766

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=1.3e-23  Score=185.86  Aligned_cols=242  Identities=19%  Similarity=0.196  Sum_probs=164.7

Q ss_pred             ccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccCC
Q 038877            9 AKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSWT   87 (298)
Q Consensus         9 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~   87 (298)
                      .+.++..+..++.+|.. -.+++++|++++|.+..+++..+..+++|++|++++| .+..+ |..+..+++|++|++++|
T Consensus        56 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             SCEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC
Confidence            45666666666666642 1357788888888777665544777888888888887 66655 356777788888888888


Q ss_pred             cccccch-hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCc
Q 038877           88 RIRGLPQ-ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHL  166 (298)
Q Consensus        88 ~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L  166 (298)
                      .++.++. .+..+++|++|++++|. +..++...+.++++|+.|++++|....              ......+..+++|
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~--------------~i~~~~~~~l~~L  198 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLE--------------YISEGAFEGLFNL  198 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCC--------------EECTTTTTTCTTC
T ss_pred             cCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCcc--------------ccChhhccCCCCC
Confidence            7776664 36777888888888773 455555457778888888887744311              1112346677778


Q ss_pred             cEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCC
Q 038877          167 NVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFR  246 (298)
Q Consensus       167 ~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  246 (298)
                      +.|+++++....++.    ....++|+.|++++|.........+..+++|+.|++++|.+..+....+        ..++
T Consensus       199 ~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------~~l~  266 (452)
T 3zyi_A          199 KYLNLGMCNIKDMPN----LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF--------DGLA  266 (452)
T ss_dssp             CEEECTTSCCSSCCC----CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTT--------TTCT
T ss_pred             CEEECCCCccccccc----ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHh--------cCCC
Confidence            888887776554432    2334667888888877666666667777888888888887776555544        4677


Q ss_pred             cccEEeccCCCCCCchhh--hhhcCCCcEEEeecCc
Q 038877          247 SLNTVSVDYCQKAKDLTW--LVFAQNLKELRIDSCY  280 (298)
Q Consensus       247 ~L~~L~l~~c~~l~~l~~--l~~~~~L~~L~l~~c~  280 (298)
                      +|+.|++++| .++.++.  +..+++|++|++.+++
T Consensus       267 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          267 SLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             CCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence            8888888887 6666642  4567788888887764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=8.2e-24  Score=179.34  Aligned_cols=221  Identities=19%  Similarity=0.200  Sum_probs=186.5

Q ss_pred             CCCccEEEeecCCCcCCCC-CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeec
Q 038877            6 WEGAKRISLMKTGIQSPSE-IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDL   84 (298)
Q Consensus         6 ~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l   84 (298)
                      ..+++.|+++++.+..+|. +..+++|++|++++|.+..+|.. ++.+++|++|++++| .+..+|..++.+++|++|++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARN-PLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence            4789999999999999875 57899999999999999888877 899999999999999 88899999999999999999


Q ss_pred             cCC-cccccchhhcC---------CCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCch
Q 038877           85 SWT-RIRGLPQELKA---------LEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAE  154 (298)
Q Consensus        85 ~~~-~~~~l~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      ++| ....+|..+..         +++|++|++++|. +..+|.. ++++++|+.|++++|.+..               
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~-l~~l~~L~~L~L~~N~l~~---------------  220 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPAS-IANLQNLKSLKIRNSPLSA---------------  220 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGG-GGGCTTCCEEEEESSCCCC---------------
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHh-hcCCCCCCEEEccCCCCCc---------------
Confidence            997 44577766554         9999999999994 5588876 8999999999999999843               


Q ss_pred             hHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecch
Q 038877          155 PLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSA  234 (298)
Q Consensus       155 ~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  234 (298)
                       ++..+..+++|+.|++++|....  .++......++|+.|++++|......+..+..+++|+.|++++|......+..+
T Consensus       221 -l~~~l~~l~~L~~L~Ls~n~~~~--~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          221 -LGPAIHHLPKLEELDLRGCTALR--NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             -CCGGGGGCTTCCEEECTTCTTCC--BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred             -CchhhccCCCCCEEECcCCcchh--hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence             55578899999999999876533  233444556889999999998777777779999999999999999888333444


Q ss_pred             hhhhccccccCCcccEEeccCC
Q 038877          235 EEVKKLFRSGFRSLNTVSVDYC  256 (298)
Q Consensus       235 ~~~~~~~~~~~~~L~~L~l~~c  256 (298)
                              ..+++|+.+++...
T Consensus       298 --------~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          298 --------AQLPANCIILVPPH  311 (328)
T ss_dssp             --------GGSCTTCEEECCGG
T ss_pred             --------hhccCceEEeCCHH
Confidence                    57899999988865

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.91  E-value=5.7e-24  Score=194.87  Aligned_cols=266  Identities=17%  Similarity=0.190  Sum_probs=165.4

Q ss_pred             cccCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCc-cCCc-cccCccCC
Q 038877            3 VEEWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALS-KLPS-GISNLVSL   79 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~p~-~~~~l~~L   79 (298)
                      ++++++|+.|++++|.+..+| .+..+++|++|++++|.+..+++..+..+++|++|++++| .+. .+|. .+..+++|
T Consensus       274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~l~~L  352 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN-TKRLELGTGCLENLENL  352 (606)
T ss_dssp             TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC-SSCCBCCSSTTTTCTTC
T ss_pred             hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC-CcccccchhhhhccCcC
Confidence            778999999999999999987 4588999999999999988776555889999999999999 554 5654 48889999


Q ss_pred             CeeeccCCccccc---chhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccc---------cccc
Q 038877           80 HHLDLSWTRIRGL---PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ---------EEGS  147 (298)
Q Consensus        80 ~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---------~~~~  147 (298)
                      ++|++++|.+..+   +..+..+++|++|++++|...+..+. .+.++++|+.|++++|.+......         ...+
T Consensus       353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  431 (606)
T 3t6q_A          353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE-AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN  431 (606)
T ss_dssp             CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT-TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred             CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH-HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence            9999999988754   56688888999999988854444344 378888888888888877431100         0001


Q ss_pred             ccccC-chhHHHhhcCCCCccEEEEEecCccchh-hhccccccccceeEEEEeccCCCCcccccccccccccceecccCC
Q 038877          148 VLYDD-AEPLMKELLGLKHLNVLSWSLHSSLAVQ-KFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSD  225 (298)
Q Consensus       148 ~~~~~-~~~~~~~l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  225 (298)
                      +.... ....+..+..+++|+.|+++++...... ........+++|+.|++++|......+.++..++.|+.|++++|.
T Consensus       432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR  511 (606)
T ss_dssp             CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence            11111 1112233444455555555544432210 001112233455555555554444444445555555555555555


Q ss_pred             cceeeecchhhhhccccccCCcccEEeccCCCCCCchh--hhhhcCCCcEEEeecCc
Q 038877          226 LEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT--WLVFAQNLKELRIDSCY  280 (298)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~~~~L~~L~l~~c~  280 (298)
                      +.......+        ..++.| .|++++| .++.++  .+..+++|++|++.+++
T Consensus       512 l~~~~~~~l--------~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          512 LTSSSIEAL--------SHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNP  558 (606)
T ss_dssp             CCGGGGGGG--------TTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred             cCcCChhHh--------Cccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCC
Confidence            544333333        345555 5666665 444432  23456666666666654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.91  E-value=1.5e-23  Score=192.15  Aligned_cols=61  Identities=16%  Similarity=0.118  Sum_probs=35.4

Q ss_pred             cccCCCccEEEeecCCCcCC--CCCCCCCcccEEEecCCcccccCchHHhcCCCcc--EEEccCC
Q 038877            3 VEEWEGAKRISLMKTGIQSP--SEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLR--VLSLRRN   63 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~--~L~l~~~   63 (298)
                      ++++++|++|++++|.+.++  |....+++|++|++++|.+..+++..+..+++|+  .|++++|
T Consensus       125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n  189 (606)
T 3t6q_A          125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN  189 (606)
T ss_dssp             CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred             hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence            44556666666666666553  4444466666666666666555444455666665  5555555

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=9e-24  Score=193.12  Aligned_cols=256  Identities=16%  Similarity=0.138  Sum_probs=125.8

Q ss_pred             CCccEEEeecCCCcCCCC--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeee
Q 038877            7 EGAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLD   83 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~   83 (298)
                      .+++.+++.++.+..+|.  +..+++|++|++++|.+..+++..+..+++|++|++++| .+..+| ..++.+++|++|+
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEE
Confidence            444555555555544443  144555555555555554444333455555555555555 444332 2344555555555


Q ss_pred             ccCCcccccchh-hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccc---------------------
Q 038877           84 LSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRK---------------------  141 (298)
Q Consensus        84 l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---------------------  141 (298)
                      +++|.+..+|.. ++.+++|++|++++|... .++...++++++|+.|++++|.+....                     
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~  208 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA  208 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence            555555544433 345555555555555322 222222455555555555555442200                     


Q ss_pred             cc---ccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccc
Q 038877          142 EQ---EEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQE  218 (298)
Q Consensus       142 ~~---~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  218 (298)
                      ..   ...++.......++.  ...++|+.|+++++......    .....+.|+.|++++|......+..+..+++|+.
T Consensus       209 ~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L~L~~n~l~~~~----~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  282 (597)
T 3oja_B          209 IPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTA----WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER  282 (597)
T ss_dssp             CCTTCSEEECCSSCCCEEEC--SCCSCCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             CCchhheeeccCCccccccc--ccCCCCCEEECCCCCCCCCh----hhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence            00   000000000000000  01124445555444433221    1223456677777776655555556666777777


Q ss_pred             eecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh-hhhhcCCCcEEEeecCc
Q 038877          219 LVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT-WLVFAQNLKELRIDSCY  280 (298)
Q Consensus       219 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~~~~L~~L~l~~c~  280 (298)
                      |++++|.+..++...         ..+++|+.|++++| .++.++ .+..+++|++|++.+|.
T Consensus       283 L~Ls~N~l~~l~~~~---------~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          283 LYISNNRLVALNLYG---------QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS  335 (597)
T ss_dssp             EECTTSCCCEEECSS---------SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred             EECCCCCCCCCCccc---------ccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC
Confidence            777777666543221         35778888888887 566664 35667788888877764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=2.2e-23  Score=181.03  Aligned_cols=261  Identities=18%  Similarity=0.168  Sum_probs=183.5

Q ss_pred             cccCCCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCcc-ccCccCC
Q 038877            3 VEEWEGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSL   79 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~-~~~l~~L   79 (298)
                      ++++++|++|++++|.+..++  .+..+++|++|++++|.+..+++..++.+++|++|++++| .+..+|.. ++.+++|
T Consensus        65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L  143 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKL  143 (390)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCC
Confidence            467888999999999888754  4578899999999999888777666888999999999999 78877764 5788999


Q ss_pred             CeeeccCCcccccc-hhhcCCCcccEEeccCCccCCCCchhhhcC----------------CCcccEEEeeccCCccccc
Q 038877           80 HHLDLSWTRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISG----------------FSKLEVLRLLWCGLWSRKE  142 (298)
Q Consensus        80 ~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~----------------l~~L~~L~l~~~~~~~~~~  142 (298)
                      ++|++++|.+..++ ..+..+++|++|++++|.. ..++...+.+                .++|+.|++++|.+.....
T Consensus       144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~  222 (390)
T 3o6n_A          144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG  222 (390)
T ss_dssp             CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC-SBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC
T ss_pred             cEEECCCCccCccChhhccCCCCCCEEECCCCcC-CccccccccccceeecccccccccCCCCcceEEECCCCeeeeccc
Confidence            99999998888664 4588888999999988843 3333211211                1223344444433321100


Q ss_pred             c-----ccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCccccccccccccc
Q 038877          143 Q-----EEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQ  217 (298)
Q Consensus       143 ~-----~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  217 (298)
                      .     ....+....... ...+..+++|+.|+++++......  +......++|+.|++++|..... ......+++|+
T Consensus       223 ~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~  298 (390)
T 3o6n_A          223 PVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLK  298 (390)
T ss_dssp             CCCSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCC
T ss_pred             cccccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCCCcC--hhHccccccCCEEECCCCcCccc-CcccCCCCCCC
Confidence            0     111111111111 246778899999999998765431  22334457899999999975443 33456789999


Q ss_pred             ceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchhhhhhcCCCcEEEeecCc
Q 038877          218 ELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCY  280 (298)
Q Consensus       218 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~L~~L~l~~c~  280 (298)
                      .|++++|.+..++.. +        ..+++|+.|++++| .++.++ +..+++|++|++.+++
T Consensus       299 ~L~L~~n~l~~~~~~-~--------~~l~~L~~L~L~~N-~i~~~~-~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          299 VLDLSHNHLLHVERN-Q--------PQFDRLENLYLDHN-SIVTLK-LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             EEECCSSCCCCCGGG-H--------HHHTTCSEEECCSS-CCCCCC-CCTTCCCSEEECCSSC
T ss_pred             EEECCCCcceecCcc-c--------cccCcCCEEECCCC-ccceeC-chhhccCCEEEcCCCC
Confidence            999999988764332 2        36899999999999 678775 6789999999999874

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.91  E-value=2.7e-23  Score=188.25  Aligned_cols=132  Identities=25%  Similarity=0.306  Sum_probs=94.3

Q ss_pred             CCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeee
Q 038877            7 EGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLD   83 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~   83 (298)
                      ++|++|++++|.+.+++  .+..+++|++|++++|.+..+++..+..+++|++|++++| .+..+++ .++.+++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEE
Confidence            56788888888777642  3577788888888888777666544777788888888888 6666554 477778888888


Q ss_pred             ccCCcccc--cchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcc
Q 038877           84 LSWTRIRG--LPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWS  139 (298)
Q Consensus        84 l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  139 (298)
                      +++|.+..  .+..++.+++|++|++++|...+.++...++++++|++|++++|.+.+
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            88877763  455677777888888877754566654447777777777777777643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.91  E-value=1.1e-23  Score=198.11  Aligned_cols=133  Identities=15%  Similarity=0.180  Sum_probs=110.5

Q ss_pred             CcccCCCccEEEeecCCCcC------------------CCCC-C--CCCcccEEEecCCccc-ccCchHHhcCCCccEEE
Q 038877            2 KVEEWEGAKRISLMKTGIQS------------------PSEI-P--TCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLS   59 (298)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~~------------------~~~~-~--~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~   59 (298)
                      .++++++|+.|++++|.+++                  +|.. .  .+++|++|++++|.+. .+|.. +..+++|++|+
T Consensus       443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~  521 (876)
T 4ecn_A          443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLN  521 (876)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEE
T ss_pred             HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEE
Confidence            47889999999999999988                  7744 5  8999999999999765 67765 88999999999


Q ss_pred             ccCCcCCc--cCCccccCcc-------CCCeeeccCCcccccch--hhcCCCcccEEeccCCccCCCCchhhhcCCCccc
Q 038877           60 LRRNLALS--KLPSGISNLV-------SLHHLDLSWTRIRGLPQ--ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLE  128 (298)
Q Consensus        60 l~~~~~~~--~~p~~~~~l~-------~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  128 (298)
                      +++|..++  .+|..++.+.       +|++|++++|.+..+|.  .++.+++|+.|++++|.. ..+| . ++++++|+
T Consensus       522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp-~-~~~L~~L~  598 (876)
T 4ecn_A          522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLE-A-FGTNVKLT  598 (876)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCC-CBCC-C-CCTTSEES
T ss_pred             CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCc-ccch-h-hcCCCcce
Confidence            99993155  4777666655       99999999998888888  899999999999999854 4777 3 88899999


Q ss_pred             EEEeeccCCc
Q 038877          129 VLRLLWCGLW  138 (298)
Q Consensus       129 ~L~l~~~~~~  138 (298)
                      .|++++|.+.
T Consensus       599 ~L~Ls~N~l~  608 (876)
T 4ecn_A          599 DLKLDYNQIE  608 (876)
T ss_dssp             EEECCSSCCS
T ss_pred             EEECcCCccc
Confidence            9999988874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.90  E-value=2.4e-23  Score=184.01  Aligned_cols=247  Identities=13%  Similarity=0.128  Sum_probs=195.5

Q ss_pred             CCcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCC
Q 038877            1 PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH   80 (298)
Q Consensus         1 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~   80 (298)
                      |.++++++|++|++++|.++++| +..+++|++|++++|.+..++   ++.+++|++|++++| .+..+|  ++.+++|+
T Consensus        58 ~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~  130 (457)
T 3bz5_A           58 TGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLTKLD--VSQNPLLT  130 (457)
T ss_dssp             TTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCSCCC--CTTCTTCC
T ss_pred             hhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCCeec--CCCCCcCC
Confidence            46788999999999999999986 888999999999999998764   778999999999999 888775  78999999


Q ss_pred             eeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh
Q 038877           81 HLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL  160 (298)
Q Consensus        81 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  160 (298)
                      +|++++|.++.++  ++.+++|++|++++|...+.++   ++.+++|+.|++++|.+..                ++  +
T Consensus       131 ~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~----------------l~--l  187 (457)
T 3bz5_A          131 YLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE----------------LD--V  187 (457)
T ss_dssp             EEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC----------------CC--C
T ss_pred             EEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce----------------ec--c
Confidence            9999999999875  7889999999999997666662   7899999999999999843                22  7


Q ss_pred             cCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhcc
Q 038877          161 LGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKL  240 (298)
Q Consensus       161 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  240 (298)
                      ..+++|+.++++.+.....+     ...++.|+.|++++|......   +..+++|+.|++++|.+..+++..+..-..+
T Consensus       188 ~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L  259 (457)
T 3bz5_A          188 SQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL  259 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEE
T ss_pred             ccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEE
Confidence            78899999999998776542     344588999999999876632   7889999999999999877543222000000


Q ss_pred             ccccCCcccEEeccCCCCCCchhhhhhcCCCcEEEeecCcccccccc
Q 038877          241 FRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIIS  287 (298)
Q Consensus       241 ~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~L~~L~l~~c~~l~~~~~  287 (298)
                       .-...+|+.|++++|..+..++ ...+++|++|++++|..+..++.
T Consensus       260 -~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~  304 (457)
T 3bz5_A          260 -HCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDC  304 (457)
T ss_dssp             -ECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred             -eccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceecc
Confidence             0011244555666665555554 36789999999999998887774

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=3.6e-23  Score=189.17  Aligned_cols=261  Identities=18%  Similarity=0.158  Sum_probs=185.4

Q ss_pred             cccCCCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCcc-ccCccCC
Q 038877            3 VEEWEGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSL   79 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~-~~~l~~L   79 (298)
                      +.++++|+.|++++|.+.+++  .+..+++|++|++++|.+..+++..++.+++|++|++++| .+..+|.. ++.+++|
T Consensus        71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L  149 (597)
T 3oja_B           71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKL  149 (597)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCC
Confidence            456888999999999888854  4588899999999999888777766788999999999999 78777664 5888999


Q ss_pred             CeeeccCCcccccc-hhhcCCCcccEEeccCCccCCCCchhhhc----------------CCCcccEEEeeccCCccccc
Q 038877           80 HHLDLSWTRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLIS----------------GFSKLEVLRLLWCGLWSRKE  142 (298)
Q Consensus        80 ~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----------------~l~~L~~L~l~~~~~~~~~~  142 (298)
                      ++|++++|.+..++ ..++.+++|++|++++|.. ..++.+.+.                ..++|+.|++++|.+.....
T Consensus       150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~  228 (597)
T 3oja_B          150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG  228 (597)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC
T ss_pred             CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccc
Confidence            99999999888655 4688889999999988843 333322122                12334444444444322111


Q ss_pred             c-----ccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCccccccccccccc
Q 038877          143 Q-----EEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQ  217 (298)
Q Consensus       143 ~-----~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  217 (298)
                      .     ....+...... .+..+..+++|+.|++++|......  +.....++.|+.|++++|..... +.....+|+|+
T Consensus       229 ~~~~~L~~L~L~~n~l~-~~~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~  304 (597)
T 3oja_B          229 PVNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLK  304 (597)
T ss_dssp             SCCSCCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCC
T ss_pred             ccCCCCCEEECCCCCCC-CChhhccCCCCCEEECCCCccCCCC--HHHhcCccCCCEEECCCCCCCCC-CcccccCCCCc
Confidence            1     01111111111 1356778999999999998765431  22334457899999999975443 33456789999


Q ss_pred             ceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchhhhhhcCCCcEEEeecCc
Q 038877          218 ELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCY  280 (298)
Q Consensus       218 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~L~~L~l~~c~  280 (298)
                      .|++++|.+..++.. +        ..+++|+.|++++| .++.++ +..+++|++|++.+++
T Consensus       305 ~L~Ls~N~l~~i~~~-~--------~~l~~L~~L~L~~N-~l~~~~-~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          305 VLDLSHNHLLHVERN-Q--------PQFDRLENLYLDHN-SIVTLK-LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             EEECCSSCCCCCGGG-H--------HHHTTCSEEECCSS-CCCCCC-CCTTCCCSEEECCSSC
T ss_pred             EEECCCCCCCccCcc-c--------ccCCCCCEEECCCC-CCCCcC-hhhcCCCCEEEeeCCC
Confidence            999999998864432 2        36899999999999 677775 6788999999999875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.90  E-value=3.4e-24  Score=180.61  Aligned_cols=229  Identities=14%  Similarity=0.103  Sum_probs=191.4

Q ss_pred             CcccCCCccEEEeec-CCCcC-CC-CCCCCCcccEEEecCCccc-ccCchHHhcCCCccEEEccCCcCCc-cCCccccCc
Q 038877            2 KVEEWEGAKRISLMK-TGIQS-PS-EIPTCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALS-KLPSGISNL   76 (298)
Q Consensus         2 ~~~~~~~L~~L~l~~-~~~~~-~~-~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~p~~~~~l   76 (298)
                      .++++++|++|++++ |.+.+ +| .+..+++|++|++++|.+. .+|.. +..+++|++|++++| .+. .+|..+..+
T Consensus        71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l  148 (313)
T 1ogq_A           71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYN-ALSGTLPPSISSL  148 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSS-EEESCCCGGGGGC
T ss_pred             hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCEEeCCCC-ccCCcCChHHhcC
Confidence            478899999999995 88875 66 4588999999999999998 66665 899999999999999 666 778899999


Q ss_pred             cCCCeeeccCCccc-ccchhhcCCC-cccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCch
Q 038877           77 VSLHHLDLSWTRIR-GLPQELKALE-KLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAE  154 (298)
Q Consensus        77 ~~L~~L~l~~~~~~-~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      ++|++|++++|.+. .+|..++.++ +|++|++++|...+.+|.. ++.++ |+.|++++|.+               ..
T Consensus       149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~N~l---------------~~  211 (313)
T 1ogq_A          149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRNML---------------EG  211 (313)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCSSEE---------------EE
T ss_pred             CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcCCcc---------------cC
Confidence            99999999999998 8899999998 9999999999766677775 78887 99999999998               34


Q ss_pred             hHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcce-eeecc
Q 038877          155 PLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE-MKIDS  233 (298)
Q Consensus       155 ~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~  233 (298)
                      ..+..+..+++|+.|+++++......   ......++|++|++++|......+..+..+++|+.|++++|.+.. ++. .
T Consensus       212 ~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~  287 (313)
T 1ogq_A          212 DASVLFGSDKNTQKIHLAKNSLAFDL---GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G  287 (313)
T ss_dssp             CCGGGCCTTSCCSEEECCSSEECCBG---GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred             cCCHHHhcCCCCCEEECCCCceeeec---CcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-C
Confidence            56778889999999999988764221   123445889999999998766667779999999999999999876 322 1


Q ss_pred             hhhhhccccccCCcccEEeccCCCCCCch
Q 038877          234 AEEVKKLFRSGFRSLNTVSVDYCQKAKDL  262 (298)
Q Consensus       234 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l  262 (298)
                               ..+++|+.+++.+++.+...
T Consensus       288 ---------~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          288 ---------GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             ---------TTGGGSCGGGTCSSSEEEST
T ss_pred             ---------ccccccChHHhcCCCCccCC
Confidence                     46899999999999766654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.90  E-value=3.9e-23  Score=190.07  Aligned_cols=249  Identities=12%  Similarity=0.096  Sum_probs=119.4

Q ss_pred             CCccEEEeecCCCcCCCC---CCCCCcccEEEecCCccc-ccCchHHhcCCCccEEEccCCcCCccCCccccCccC-CCe
Q 038877            7 EGAKRISLMKTGIQSPSE---IPTCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVS-LHH   81 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~-L~~   81 (298)
                      ++|++|++++|.++.+|.   +..+++|++|++++|.+. .+| . +..+++|++|++++| .+..+|..+..+++ |++
T Consensus       305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~  381 (636)
T 4eco_A          305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYN-QITEIPANFCGFTEQVEN  381 (636)
T ss_dssp             GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSS-EEEECCTTSEEECTTCCE
T ss_pred             CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCC-ccccccHhhhhhcccCcE
Confidence            444444444444444443   244444444444444444 333 2 444444444444444 34344444444444 444


Q ss_pred             eeccCCcccccchhhcCCC--cccEEeccCCccCCCCchhhhc-------CCCcccEEEeeccCCccccccccccccccC
Q 038877           82 LDLSWTRIRGLPQELKALE--KLRYLSLEGTRHLSIIPHQLIS-------GFSKLEVLRLLWCGLWSRKEQEEGSVLYDD  152 (298)
Q Consensus        82 L~l~~~~~~~l~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  152 (298)
                      |++++|.++.+|..+..++  +|+.|++++|...+..|.. +.       .+++|+.|++++|.+.              
T Consensus       382 L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~--------------  446 (636)
T 4eco_A          382 LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQIS--------------  446 (636)
T ss_dssp             EECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCCC--------------
T ss_pred             EEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCccC--------------
Confidence            4444444444444333322  4444444444333333332 33       3444555555544442              


Q ss_pred             chhHHH-hhcCCCCccEEEEEecCccchhhhccc-----cccccceeEEEEeccCCCCccccccc--ccccccceecccC
Q 038877          153 AEPLMK-ELLGLKHLNVLSWSLHSSLAVQKFLKY-----PKLLSITQSVGVYFCQSPPLNVLHLA--YMENLQELVILNS  224 (298)
Q Consensus       153 ~~~~~~-~l~~l~~L~~l~l~~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~  224 (298)
                        .++. .+..+++|+.|++++|....++.....     ...+++|+.|++++|.... .+..+.  .+++|+.|++++|
T Consensus       447 --~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N  523 (636)
T 4eco_A          447 --KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYN  523 (636)
T ss_dssp             --SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSS
T ss_pred             --cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCC
Confidence              2332 234567777777777665432211000     0111267777777776552 223343  6777777777777


Q ss_pred             CcceeeecchhhhhccccccCCcccEEeccC------CCCCCchh-hhhhcCCCcEEEeecCccccccc
Q 038877          225 DLEEMKIDSAEEVKKLFRSGFRSLNTVSVDY------CQKAKDLT-WLVFAQNLKELRIDSCYDVEEII  286 (298)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------c~~l~~l~-~l~~~~~L~~L~l~~c~~l~~~~  286 (298)
                      .+..++. .+        ..+++|+.|++++      |.-...++ .+..+++|++|++++|.. ..++
T Consensus       524 ~l~~ip~-~~--------~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip  582 (636)
T 4eco_A          524 SFSKFPT-QP--------LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN  582 (636)
T ss_dssp             CCSSCCC-GG--------GGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred             CCCCcCh-hh--------hcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence            7665322 22        3466666666643      22222333 345566666666666643 4444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.90  E-value=2.8e-23  Score=190.28  Aligned_cols=246  Identities=16%  Similarity=0.097  Sum_probs=165.1

Q ss_pred             CccEEEe-ecCCCcC-CCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeecc
Q 038877            8 GAKRISL-MKTGIQS-PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLS   85 (298)
Q Consensus         8 ~L~~L~l-~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~   85 (298)
                      .++.+.+ ..+.+.+ +|.+..+++|+.|+++++.+..++ . +..+++|++|++++| .+..+|. + .+++|++|+++
T Consensus       262 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~-l~~~~~L~~L~l~~n-~l~~lp~-~-~l~~L~~L~l~  336 (606)
T 3vq2_A          262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-D-VPKHFKWQSLSIIRC-QLKQFPT-L-DLPFLKSLTLT  336 (606)
T ss_dssp             EEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-C-CCTTCCCSEEEEESC-CCSSCCC-C-CCSSCCEEEEE
T ss_pred             cHhheeccccccccccccccccCCCCCEEEecCccchhhh-h-ccccccCCEEEcccc-cCccccc-C-CCCccceeecc
Confidence            4556666 4455555 556788999999999999998887 3 888999999999999 6677773 3 55556665555


Q ss_pred             CC----------------------ccccc---chhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccc
Q 038877           86 WT----------------------RIRGL---PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSR  140 (298)
Q Consensus        86 ~~----------------------~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  140 (298)
                      +|                      .+..+   +..+..+++|++|++++|. +..+|.. +.++++|+.|++++|.+.  
T Consensus       337 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~-~~~l~~L~~L~l~~n~l~--  412 (606)
T 3vq2_A          337 MNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSAN-FMGLEELQHLDFQHSTLK--  412 (606)
T ss_dssp             SCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCC-CTTCTTCCEEECTTSEEE--
T ss_pred             CCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhh-ccCCCCCCeeECCCCccC--
Confidence            55                      33322   3444445555555555542 2233322 455555555555555442  


Q ss_pred             cccccccccccCchhHH-HhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCC-cccccccccccccc
Q 038877          141 KEQEEGSVLYDDAEPLM-KELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPP-LNVLHLAYMENLQE  218 (298)
Q Consensus       141 ~~~~~~~~~~~~~~~~~-~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~  218 (298)
                                   ...+ ..+..+++|+.++++++.....  .+.....+++|++|++++|.... ..+..+..+++|+.
T Consensus       413 -------------~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  477 (606)
T 3vq2_A          413 -------------RVTEFSAFLSLEKLLYLDISYTNTKID--FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF  477 (606)
T ss_dssp             -------------STTTTTTTTTCTTCCEEECTTSCCEEC--CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             -------------CccChhhhhccccCCEEECcCCCCCcc--chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCE
Confidence                         1222 4566778888888877765431  12233445778888888886544 34556788889999


Q ss_pred             eecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCch-h-hhhhcCCCcEEEeecCcccccccc
Q 038877          219 LVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDL-T-WLVFAQNLKELRIDSCYDVEEIIS  287 (298)
Q Consensus       219 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~-~l~~~~~L~~L~l~~c~~l~~~~~  287 (298)
                      |++++|.+.......+        ..+++|+.|++++| .++.+ + .+..+++|++|++++|. ++.++.
T Consensus       478 L~Ls~n~l~~~~~~~~--------~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~  538 (606)
T 3vq2_A          478 LDLSKCQLEQISWGVF--------DTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR-IETSKG  538 (606)
T ss_dssp             EECTTSCCCEECTTTT--------TTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC-CCCEES
T ss_pred             EECCCCcCCccChhhh--------cccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCc-CcccCH
Confidence            9999998877555555        57899999999999 67766 3 46778999999999984 666664

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.90  E-value=1.1e-22  Score=184.77  Aligned_cols=102  Identities=28%  Similarity=0.403  Sum_probs=73.3

Q ss_pred             CCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeec
Q 038877            7 EGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDL   84 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l   84 (298)
                      ++|++|++++|.+..++  .+..+++|++|++++|.+..+++..+..+++|++|++++| .+..+|..  .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEEEC
Confidence            56777777777777755  4577777777777777777665544777777777777777 67677665  6777777777


Q ss_pred             cCCcccccc--hhhcCCCcccEEeccCCc
Q 038877           85 SWTRIRGLP--QELKALEKLRYLSLEGTR  111 (298)
Q Consensus        85 ~~~~~~~l~--~~~~~l~~L~~L~l~~~~  111 (298)
                      ++|.+..++  ..++.+++|++|++++|.
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~  157 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAK  157 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCc
Confidence            777777543  567777777777777764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.90  E-value=4.7e-23  Score=171.37  Aligned_cols=221  Identities=19%  Similarity=0.218  Sum_probs=174.7

Q ss_pred             cEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccCCc
Q 038877           10 KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSWTR   88 (298)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~   88 (298)
                      +.++.+++.++.+|.. -.++|++|++++|.+..++...+..+++|++|++++| .+..+ |..++.+++|++|++++|.
T Consensus        14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCC
Confidence            5788888888888743 3579999999999999887666899999999999999 77766 6788999999999999996


Q ss_pred             -cccc-chhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCc
Q 038877           89 -IRGL-PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHL  166 (298)
Q Consensus        89 -~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L  166 (298)
                       +..+ +..+..+++|++|++++|.. ..++...+.++++|+.|++++|.+..               .....+..+++|
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L  155 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQA---------------LPDDTFRDLGNL  155 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCC---------------CCTTTTTTCTTC
T ss_pred             CccccCHHHhcCCcCCCEEECCCCcC-CEECHhHhhCCcCCCEEECCCCcccc---------------cCHhHhccCCCc
Confidence             8876 56788999999999999954 44544458899999999999998843               233457788999


Q ss_pred             cEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCC
Q 038877          167 NVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFR  246 (298)
Q Consensus       167 ~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  246 (298)
                      +.|+++++....+..  ......+.|+.|++++|......+..+..+++|+.|++++|.+..++...+        ..++
T Consensus       156 ~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------~~l~  225 (285)
T 1ozn_A          156 THLFLHGNRISSVPE--RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL--------APLR  225 (285)
T ss_dssp             CEEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH--------TTCT
T ss_pred             cEEECCCCcccccCH--HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHc--------ccCc
Confidence            999999886654332  123345778899999887766666778888899999999998877555545        5788


Q ss_pred             cccEEeccCCCC
Q 038877          247 SLNTVSVDYCQK  258 (298)
Q Consensus       247 ~L~~L~l~~c~~  258 (298)
                      +|+.|++++++-
T Consensus       226 ~L~~L~l~~N~~  237 (285)
T 1ozn_A          226 ALQYLRLNDNPW  237 (285)
T ss_dssp             TCCEEECCSSCE
T ss_pred             ccCEEeccCCCc
Confidence            999999998843

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.90  E-value=4.3e-23  Score=181.95  Aligned_cols=223  Identities=22%  Similarity=0.273  Sum_probs=190.6

Q ss_pred             CCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeee
Q 038877            7 EGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLD   83 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~   83 (298)
                      ++++.|++++|.+..++  .+..+++|++|++++|.+..++...+..+++|++|++++| .+..+|. .+..+++|++|+
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceee
Confidence            57999999999998854  4589999999999999999888766999999999999999 8888765 689999999999


Q ss_pred             ccCCcccccch-hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcC
Q 038877           84 LSWTRIRGLPQ-ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLG  162 (298)
Q Consensus        84 l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  162 (298)
                      +++|.+..++. .+..+++|++|++++++....++...+.++++|+.|++++|.+..                + ..+..
T Consensus       143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~----------------~-~~~~~  205 (440)
T 3zyj_A          143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE----------------I-PNLTP  205 (440)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS----------------C-CCCTT
T ss_pred             CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc----------------c-cccCC
Confidence            99999997764 688999999999999877888887778999999999999998843                2 24778


Q ss_pred             CCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhcccc
Q 038877          163 LKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFR  242 (298)
Q Consensus       163 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  242 (298)
                      +++|+.|++++|....+.  +......++|+.|++.+|.........+..+++|+.|++++|.+..++...+        
T Consensus       206 l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--------  275 (440)
T 3zyj_A          206 LIKLDELDLSGNHLSAIR--PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF--------  275 (440)
T ss_dssp             CSSCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT--------
T ss_pred             CcccCEEECCCCccCccC--hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh--------
Confidence            899999999998765432  2234456889999999998777777789999999999999999988666655        


Q ss_pred             ccCCcccEEeccCCC
Q 038877          243 SGFRSLNTVSVDYCQ  257 (298)
Q Consensus       243 ~~~~~L~~L~l~~c~  257 (298)
                      ..+++|+.|++++|+
T Consensus       276 ~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          276 TPLHHLERIHLHHNP  290 (440)
T ss_dssp             SSCTTCCEEECCSSC
T ss_pred             ccccCCCEEEcCCCC
Confidence            578999999999874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.90  E-value=5.1e-23  Score=185.24  Aligned_cols=102  Identities=19%  Similarity=0.142  Sum_probs=70.3

Q ss_pred             cccCCCccEEEeecCCCcCC-C-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCcc--CCccccCccC
Q 038877            3 VEEWEGAKRISLMKTGIQSP-S-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSK--LPSGISNLVS   78 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~p~~~~~l~~   78 (298)
                      ++++++|++|++++|.+.++ | .+..+++|++|++++|.+..+|..   .+++|++|++++| .+..  +|..++.+++
T Consensus        41 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~  116 (520)
T 2z7x_B           41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFN-AFDALPICKEFGNMSQ  116 (520)
T ss_dssp             HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEECCSS-CCSSCCCCGGGGGCTT
T ss_pred             ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEeccCC-ccccccchhhhccCCc
Confidence            56778888888888888774 3 457788888888888877776654   6788888888888 6653  4677778888


Q ss_pred             CCeeeccCCcccccchhhcCCCcc--cEEeccCC
Q 038877           79 LHHLDLSWTRIRGLPQELKALEKL--RYLSLEGT  110 (298)
Q Consensus        79 L~~L~l~~~~~~~l~~~~~~l~~L--~~L~l~~~  110 (298)
                      |++|++++|.+..  ..+..+++|  +.|++++|
T Consensus       117 L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n  148 (520)
T 2z7x_B          117 LKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLG  148 (520)
T ss_dssp             CCEEEEEESSCCG--GGGGGGTTSCEEEEEEEEC
T ss_pred             ceEEEecCcccch--hhccccccceeeEEEeecc
Confidence            8888887776653  123333333  44444444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.90  E-value=1.4e-22  Score=190.56  Aligned_cols=270  Identities=14%  Similarity=0.174  Sum_probs=148.4

Q ss_pred             cccCCCccEEEeecCC-CcC--CC--------CCCCCCcccEEEecCCcccccCc-hHHhcCCCccEEEccCCcCCccCC
Q 038877            3 VEEWEGAKRISLMKTG-IQS--PS--------EIPTCPRLVTFLLDGNWIEEITD-GFFRSMSSLRVLSLRRNLALSKLP   70 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~-~~~--~~--------~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~p   70 (298)
                      ++++++|+.|++++|. +++  +|        .+..+++|++|++++|.+..+|. ..+..+++|++|++++| .+..+|
T Consensus       511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp  589 (876)
T 4ecn_A          511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE  589 (876)
T ss_dssp             GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC
T ss_pred             HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch
Confidence            5566666666666665 443  33        22344566666666666665555 12666666666666666 555555


Q ss_pred             ccccCccCCCeeeccCCcccccchhhcCCCc-ccEEeccCCccCCCCchhhhcCCC--cccEEEeeccCCcccccc----
Q 038877           71 SGISNLVSLHHLDLSWTRIRGLPQELKALEK-LRYLSLEGTRHLSIIPHQLISGFS--KLEVLRLLWCGLWSRKEQ----  143 (298)
Q Consensus        71 ~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~----  143 (298)
                       .++.+++|++|++++|.+..+|..+..+++ |+.|++++|. +..+|.. +..++  +|+.|++++|.+.+..+.    
T Consensus       590 -~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~  666 (876)
T 4ecn_A          590 -AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNI-FNAKSVYVMGSVDFSYNKIGSEGRNISCS  666 (876)
T ss_dssp             -CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CCSCCSC-CCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred             -hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-CCcCchh-hhccccCCCCEEECcCCcCCCccccchhh
Confidence             566666666666666666666666666666 6666666663 3355542 34333  266666665555331110    


Q ss_pred             ---------ccccccccCchhHHHhh-cCCCCccEEEEEecCccchhhhccc-----cccccceeEEEEeccCCCCcccc
Q 038877          144 ---------EEGSVLYDDAEPLMKEL-LGLKHLNVLSWSLHSSLAVQKFLKY-----PKLLSITQSVGVYFCQSPPLNVL  208 (298)
Q Consensus       144 ---------~~~~~~~~~~~~~~~~l-~~l~~L~~l~l~~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~  208 (298)
                               ....+..+....++..+ ..+++|+.|++++|....++.....     ...+++|+.|++++|.... .+.
T Consensus       667 l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~  745 (876)
T 4ecn_A          667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSD  745 (876)
T ss_dssp             TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCG
T ss_pred             hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc-chH
Confidence                     01111111112233333 3677788888877765533321111     1122377888888776553 233


Q ss_pred             ccc--ccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCC------CCCchh-hhhhcCCCcEEEeecC
Q 038877          209 HLA--YMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQ------KAKDLT-WLVFAQNLKELRIDSC  279 (298)
Q Consensus       209 ~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~------~l~~l~-~l~~~~~L~~L~l~~c  279 (298)
                      .+.  .+++|+.|++++|.+..++. .+        ..+++|+.|++++|.      -...+| .+..+++|++|++++|
T Consensus       746 ~l~~~~l~~L~~L~Ls~N~L~~lp~-~l--------~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N  816 (876)
T 4ecn_A          746 DFRATTLPYLSNMDVSYNCFSSFPT-QP--------LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN  816 (876)
T ss_dssp             GGSTTTCTTCCEEECCSSCCSSCCC-GG--------GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred             HhhhccCCCcCEEEeCCCCCCccch-hh--------hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence            344  67788888888877766322 22        356777777776532      222333 3556777777777776


Q ss_pred             cccccccc
Q 038877          280 YDVEEIIS  287 (298)
Q Consensus       280 ~~l~~~~~  287 (298)
                      .. ..++.
T Consensus       817 ~L-~~Ip~  823 (876)
T 4ecn_A          817 DI-RKVDE  823 (876)
T ss_dssp             CC-CBCCS
T ss_pred             CC-CccCH
Confidence            44 55543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.90  E-value=4.8e-22  Score=178.93  Aligned_cols=122  Identities=22%  Similarity=0.215  Sum_probs=55.6

Q ss_pred             EEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccCCcc
Q 038877           11 RISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSWTRI   89 (298)
Q Consensus        11 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~   89 (298)
                      +++++++.++.+|.... ++|++|++++|.+..+++..+..+++|++|++++| .+..+ |..++.+++|++|++++|.+
T Consensus         4 ~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l   81 (520)
T 2z7x_B            4 LVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKL   81 (520)
T ss_dssp             EEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred             eEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCce
Confidence            44445554444443211 44555555555444444333444555555555555 34333 33444455555555555544


Q ss_pred             cccchhhcCCCcccEEeccCCccCC-CCchhhhcCCCcccEEEeeccCC
Q 038877           90 RGLPQELKALEKLRYLSLEGTRHLS-IIPHQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus        90 ~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~  137 (298)
                      +.+|..  .+++|++|++++|...+ .+|.. ++++++|++|++++|.+
T Consensus        82 ~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l  127 (520)
T 2z7x_B           82 VKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHL  127 (520)
T ss_dssp             CEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSC
T ss_pred             eecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCccc
Confidence            444433  44455555555543222 12232 44455555555554444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.90  E-value=2.4e-22  Score=170.57  Aligned_cols=243  Identities=19%  Similarity=0.173  Sum_probs=182.5

Q ss_pred             CCCccEEEeecCCCcCCCC--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeee
Q 038877            6 WEGAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLD   83 (298)
Q Consensus         6 ~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~   83 (298)
                      .+.++.|++++|.+++++.  +..+++|++|++++|.+..+.+..+..+++|++|++++| .+..+|..+.  ++|++|+
T Consensus        51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~  127 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELR  127 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEE
T ss_pred             CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEE
Confidence            3679999999999998663  588999999999999998775544899999999999999 8888887554  7899999


Q ss_pred             ccCCcccccc-hhhcCCCcccEEeccCCccCC--CCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh
Q 038877           84 LSWTRIRGLP-QELKALEKLRYLSLEGTRHLS--IIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL  160 (298)
Q Consensus        84 l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  160 (298)
                      +++|.+..++ ..+..+++|+.|++++|....  ..+. .+.++++|+.|++++|.+..                ++..+
T Consensus       128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~----------------l~~~~  190 (330)
T 1xku_A          128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG-AFQGMKKLSYIRIADTNITT----------------IPQGL  190 (330)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT-GGGGCTTCCEEECCSSCCCS----------------CCSSC
T ss_pred             CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChh-hccCCCCcCEEECCCCcccc----------------CCccc
Confidence            9999988766 458899999999999985432  3333 48899999999999998843                22222


Q ss_pred             cCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhcc
Q 038877          161 LGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKL  240 (298)
Q Consensus       161 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  240 (298)
                        .++|+.++++++......  +......++|+.|++++|.........+..+++|+.|++++|.+..++.. +      
T Consensus       191 --~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l------  259 (330)
T 1xku_A          191 --PPSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-L------  259 (330)
T ss_dssp             --CTTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT-T------
T ss_pred             --cccCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh-h------
Confidence              267888888877654431  12233456788888888876665555677888888888888887754322 2      


Q ss_pred             ccccCCcccEEeccCCCCCCchhhhh--------hcCCCcEEEeecCccc
Q 038877          241 FRSGFRSLNTVSVDYCQKAKDLTWLV--------FAQNLKELRIDSCYDV  282 (298)
Q Consensus       241 ~~~~~~~L~~L~l~~c~~l~~l~~l~--------~~~~L~~L~l~~c~~l  282 (298)
                        ..+++|+.|++++| .++.++.-.        ..+.|+.+++.+.+..
T Consensus       260 --~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          260 --ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             --TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             --ccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCccc
Confidence              46788888888888 677664211        2467888888887643

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=1.8e-23  Score=196.36  Aligned_cols=268  Identities=19%  Similarity=0.167  Sum_probs=164.6

Q ss_pred             cCCCccEEEeecCCCc-CCCCC-CC-CCcccEEEecCCccc-ccCchHHhcCCCccEEEccCCcCCc-cCCcc-ccCccC
Q 038877            5 EWEGAKRISLMKTGIQ-SPSEI-PT-CPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALS-KLPSG-ISNLVS   78 (298)
Q Consensus         5 ~~~~L~~L~l~~~~~~-~~~~~-~~-~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~p~~-~~~l~~   78 (298)
                      .+++|++|++++|.+. .+|.. .. +++|++|++++|.+. .+|.. ++.+++|++|++++| .+. .+|.. ++.+++
T Consensus       267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~  344 (768)
T 3rgz_A          267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSN-NFSGELPMDTLLKMRG  344 (768)
T ss_dssp             CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSS-EEEEECCHHHHTTCTT
T ss_pred             ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCC-cccCcCCHHHHhcCCC
Confidence            5677888888888777 35533 33 578888888888776 44444 777888888888887 554 66654 777777


Q ss_pred             CCeeeccCCccc-ccchhhcCCC-cccEEeccCCccCCCCchhhhcC--CCcccEEEeeccCCcccccc--------ccc
Q 038877           79 LHHLDLSWTRIR-GLPQELKALE-KLRYLSLEGTRHLSIIPHQLISG--FSKLEVLRLLWCGLWSRKEQ--------EEG  146 (298)
Q Consensus        79 L~~L~l~~~~~~-~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~--------~~~  146 (298)
                      |++|++++|.+. .+|..+..++ +|+.|++++|...+.++.. +..  +++|+.|++++|.+.+....        ...
T Consensus       345 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  423 (768)
T 3rgz_A          345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL  423 (768)
T ss_dssp             CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT-TTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEE
T ss_pred             CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh-hhhcccCCccEEECCCCccccccCHHHhcCCCCCEE
Confidence            888888777666 6666665555 5666666655443333332 222  44444444444444210000        000


Q ss_pred             cccccC-chhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCC
Q 038877          147 SVLYDD-AEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSD  225 (298)
Q Consensus       147 ~~~~~~-~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  225 (298)
                      ++.... ....+..+..+++|+.|++++|....  ..+......+.|++|++++|......+..+..+++|+.|++++|.
T Consensus       424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~  501 (768)
T 3rgz_A          424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG--EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR  501 (768)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             ECcCCcccCcccHHHhcCCCCCEEECCCCcccC--cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc
Confidence            000000 22345556666777777776665432  122233445677888888877666666667778888888888888


Q ss_pred             cceeeecchhhhhccccccCCcccEEeccCCCCCC-chh-hhhhcCCCcEEEeecCccccccc
Q 038877          226 LEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAK-DLT-WLVFAQNLKELRIDSCYDVEEII  286 (298)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~-~l~~~~~L~~L~l~~c~~l~~~~  286 (298)
                      +.......+        ..+++|+.|++++| .++ .++ .+..+++|++|++.+|.....++
T Consensus       502 l~~~~p~~~--------~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip  555 (768)
T 3rgz_A          502 LTGEIPKWI--------GRLENLAILKLSNN-SFSGNIPAELGDCRSLIWLDLNTNLFNGTIP  555 (768)
T ss_dssp             CCSCCCGGG--------GGCTTCCEEECCSS-CCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred             cCCcCChHH--------hcCCCCCEEECCCC-cccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence            775333344        46788888888888 444 444 46778888888888886554444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.90  E-value=4.3e-23  Score=182.58  Aligned_cols=223  Identities=23%  Similarity=0.248  Sum_probs=189.5

Q ss_pred             CCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeee
Q 038877            7 EGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLD   83 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~   83 (298)
                      ++++.|++++|.+..++  .+..+++|++|++++|.+..++...+..+++|++|++++| .+..+|. .+..+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence            57999999999998853  4589999999999999999877666999999999999999 8887765 588899999999


Q ss_pred             ccCCcccccch-hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcC
Q 038877           84 LSWTRIRGLPQ-ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLG  162 (298)
Q Consensus        84 l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  162 (298)
                      +++|.+..++. .+..+++|+.|++++|+.++.++...+.++++|+.|++++|.+..                + ..+..
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~----------------~-~~~~~  216 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD----------------M-PNLTP  216 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS----------------C-CCCTT
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc----------------c-ccccc
Confidence            99999997775 688999999999999878888887778999999999999999843                1 34778


Q ss_pred             CCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhcccc
Q 038877          163 LKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFR  242 (298)
Q Consensus       163 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  242 (298)
                      +++|+.|++++|......  +......++|+.|++.+|.........+..+++|+.|++++|.+..++...+        
T Consensus       217 l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--------  286 (452)
T 3zyi_A          217 LVGLEELEMSGNHFPEIR--PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF--------  286 (452)
T ss_dssp             CTTCCEEECTTSCCSEEC--GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS--------
T ss_pred             cccccEEECcCCcCcccC--cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh--------
Confidence            899999999998765432  1233445789999999998777777788999999999999999887665555        


Q ss_pred             ccCCcccEEeccCCC
Q 038877          243 SGFRSLNTVSVDYCQ  257 (298)
Q Consensus       243 ~~~~~L~~L~l~~c~  257 (298)
                      ..+++|+.|++++|+
T Consensus       287 ~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          287 TPLRYLVELHLHHNP  301 (452)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             ccccCCCEEEccCCC
Confidence            578999999999874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.90  E-value=3.9e-23  Score=173.59  Aligned_cols=225  Identities=20%  Similarity=0.211  Sum_probs=184.1

Q ss_pred             CCCccEEEeecCCCcCCCC--CCCCCcccEEEecCCccccc---CchHHhcCCCccEEEccCCcCCccCCccccCccCCC
Q 038877            6 WEGAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEI---TDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH   80 (298)
Q Consensus         6 ~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~   80 (298)
                      .++|++|++++|.+..+|.  +..+++|++|++++|.+..+   +.. +..+++|++|++++| .+..+|..+..+++|+
T Consensus        27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~  104 (306)
T 2z66_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFN-GVITMSSNFLGLEQLE  104 (306)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSC-SEEEEEEEEETCTTCC
T ss_pred             CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCC-ccccChhhcCCCCCCC
Confidence            3689999999999999875  47899999999999988744   344 778999999999999 8888888899999999


Q ss_pred             eeeccCCcccccch--hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHH
Q 038877           81 HLDLSWTRIRGLPQ--ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMK  158 (298)
Q Consensus        81 ~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (298)
                      +|++++|.+..++.  .+..+++|++|++++|......+. .+.++++|+.|++++|.+..              ...+.
T Consensus       105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~--------------~~~~~  169 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQE--------------NFLPD  169 (306)
T ss_dssp             EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCEEGG--------------GEECS
T ss_pred             EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCcccc--------------ccchh
Confidence            99999999987764  789999999999999955444444 48999999999999998731              13566


Q ss_pred             hhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhh
Q 038877          159 ELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVK  238 (298)
Q Consensus       159 ~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  238 (298)
                      .+..+++|+.|+++++......  +......++|++|++++|.........+..+++|+.|++++|.+.......+    
T Consensus       170 ~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----  243 (306)
T 2z66_A          170 IFTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL----  243 (306)
T ss_dssp             CCTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC----
T ss_pred             HHhhCcCCCEEECCCCCcCCcC--HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH----
Confidence            7888999999999988765432  1233445789999999998776666678889999999999999887544444    


Q ss_pred             ccccccC-CcccEEeccCCC
Q 038877          239 KLFRSGF-RSLNTVSVDYCQ  257 (298)
Q Consensus       239 ~~~~~~~-~~L~~L~l~~c~  257 (298)
                          ..+ ++|+.|++++|+
T Consensus       244 ----~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          244 ----QHFPSSLAFLNLTQND  259 (306)
T ss_dssp             ----CCCCTTCCEEECTTCC
T ss_pred             ----HhhhccCCEEEccCCC
Confidence                355 599999999984

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.89  E-value=3.2e-22  Score=171.37  Aligned_cols=256  Identities=19%  Similarity=0.218  Sum_probs=198.4

Q ss_pred             cCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeee
Q 038877            5 EWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLD   83 (298)
Q Consensus         5 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~   83 (298)
                      .|+.....+.+++.++.+|.. -.++|++|++++|.+..++...+..+++|++|++++| .+..+ |..++.+++|++|+
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCeEeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEE
Confidence            456666788888888888753 2369999999999999888756899999999999999 77766 55799999999999


Q ss_pred             ccCCcccccchh-hcCCCcccEEeccCCccCCCCch-hhhcCCCcccEEEeeccC-CccccccccccccccCchhHHHhh
Q 038877           84 LSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPH-QLISGFSKLEVLRLLWCG-LWSRKEQEEGSVLYDDAEPLMKEL  160 (298)
Q Consensus        84 l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l  160 (298)
                      +++|.++.++.. ++.+++|++|++++| .+..++. ..+.++++|+.|++++|. +.               ...+..+
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~---------------~~~~~~~  170 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFT---------------KIQRKDF  170 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCC---------------EECTTTT
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccc---------------ccCHHHc
Confidence            999999988865 899999999999999 4556665 458999999999999985 42               2234667


Q ss_pred             cCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhcc
Q 038877          161 LGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKL  240 (298)
Q Consensus       161 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  240 (298)
                      ..+++|+.++++++......  +......++|+.|++++|.........+..+++|+.|++++|.+...+...+.     
T Consensus       171 ~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-----  243 (353)
T 2z80_A          171 AGLTFLEELEIDASDLQSYE--PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS-----  243 (353)
T ss_dssp             TTCCEEEEEEEEETTCCEEC--TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------
T ss_pred             cCCCCCCEEECCCCCcCccC--HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc-----
Confidence            88999999999998765431  22344567899999999976555544566789999999999998774443331     


Q ss_pred             ccccCCcccEEeccCCCCCCc-----hh-hhhhcCCCcEEEeecCcccccccc
Q 038877          241 FRSGFRSLNTVSVDYCQKAKD-----LT-WLVFAQNLKELRIDSCYDVEEIIS  287 (298)
Q Consensus       241 ~~~~~~~L~~L~l~~c~~l~~-----l~-~l~~~~~L~~L~l~~c~~l~~~~~  287 (298)
                      .....+.++.+++.++ .+.+     ++ ++..+++|++|+++++ .++.++.
T Consensus       244 ~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~  294 (353)
T 2z80_A          244 TGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPD  294 (353)
T ss_dssp             ---CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCT
T ss_pred             cccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCH
Confidence            1135677888888888 5655     22 3577999999999998 5666664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.89  E-value=3.7e-22  Score=185.23  Aligned_cols=131  Identities=18%  Similarity=0.178  Sum_probs=107.6

Q ss_pred             CCccEEEeecCCCcCCCC--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeee
Q 038877            7 EGAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLD   83 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~   83 (298)
                      +++++|++++|.+..++.  +..+++|++|++++|.+..+++..+..+++|++|++++| .+..+|. .++.+++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEE
Confidence            578999999999888663  578899999999999888776666889999999999999 7887776 588899999999


Q ss_pred             ccCCcccccc-hhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcc
Q 038877           84 LSWTRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWS  139 (298)
Q Consensus        84 l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  139 (298)
                      +++|.+..++ ..++.+++|++|++++|...+..+. .++++++|++|++++|.+..
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~  159 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQA  159 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCcccc
Confidence            9999888776 5688899999999999855444444 37889999999999887743

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.89  E-value=1.9e-21  Score=176.64  Aligned_cols=128  Identities=23%  Similarity=0.221  Sum_probs=108.5

Q ss_pred             cCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeee
Q 038877            5 EWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLD   83 (298)
Q Consensus         5 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~   83 (298)
                      .|...++++++++.++.+|... .++|++|++++|.+..+++..+..+++|++|++++| .++.+ |..++.+++|++|+
T Consensus        29 ~~~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           29 SNELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             ----CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEE
T ss_pred             ccCCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEE
Confidence            3555689999999999988542 389999999999999888666999999999999999 78766 67899999999999


Q ss_pred             ccCCcccccchhhcCCCcccEEeccCCccCCCCc--hhhhcCCCcccEEEeeccCCc
Q 038877           84 LSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIP--HQLISGFSKLEVLRLLWCGLW  138 (298)
Q Consensus        84 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~  138 (298)
                      +++|.++.+|..  .+++|++|++++|.. ..++  . .++++++|++|++++|.+.
T Consensus       107 Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l-~~l~~p~-~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          107 VSHNRLQNISCC--PMASLRHLDLSFNDF-DVLPVCK-EFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             CTTSCCCEECSC--CCTTCSEEECCSSCC-SBCCCCG-GGGGCTTCCEEEEECSBCC
T ss_pred             CCCCcCCccCcc--ccccCCEEECCCCCc-cccCchH-hhcccCcccEEecCCCccc
Confidence            999999999877  899999999999954 4433  4 4899999999999999884

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.88  E-value=2.3e-22  Score=182.14  Aligned_cols=259  Identities=15%  Similarity=0.141  Sum_probs=184.0

Q ss_pred             CcccCCCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCcc--CCccccCcc
Q 038877            2 KVEEWEGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSK--LPSGISNLV   77 (298)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~p~~~~~l~   77 (298)
                      .++++++|++|++++|.+..++  .+..+++|++|++++|.+..+++..++.+++|++|++++| .+..  .|..++.++
T Consensus        45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~  123 (549)
T 2z81_A           45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLT  123 (549)
T ss_dssp             TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCT
T ss_pred             hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-cccccchhhhhhccC
Confidence            4788999999999999988854  3588999999999999998888777899999999999999 7764  466788999


Q ss_pred             CCCeeeccCCc-ccccc-hhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchh
Q 038877           78 SLHHLDLSWTR-IRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEP  155 (298)
Q Consensus        78 ~L~~L~l~~~~-~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  155 (298)
                      +|++|++++|. +..++ ..+..+++|++|++++|...+..|.. ++.+++|++|+++.|....               .
T Consensus       124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~---------------~  187 (549)
T 2z81_A          124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSESAF---------------L  187 (549)
T ss_dssp             TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBSTT---------------H
T ss_pred             CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCcccc---------------c
Confidence            99999999986 66676 56889999999999998665556664 8899999999999887732               2


Q ss_pred             HHHhhcCCCCccEEEEEecCccchhh-----------------------------hccccccccc---------------
Q 038877          156 LMKELLGLKHLNVLSWSLHSSLAVQK-----------------------------FLKYPKLLSI---------------  191 (298)
Q Consensus       156 ~~~~l~~l~~L~~l~l~~~~~~~~~~-----------------------------~~~~~~~~~~---------------  191 (298)
                      ....+..+++|+.++++++.......                             +.........               
T Consensus       188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~  267 (549)
T 2z81_A          188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG  267 (549)
T ss_dssp             HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS
T ss_pred             chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc
Confidence            22234568999999999877644210                             0000011122               


Q ss_pred             --------------------------------------------eeEEEEeccCCCCcccccccccccccceecccCCcc
Q 038877          192 --------------------------------------------TQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLE  227 (298)
Q Consensus       192 --------------------------------------------L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  227 (298)
                                                                  +++|++.+|.........+..+++|+.|++++|.+.
T Consensus       268 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~  347 (549)
T 2z81_A          268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV  347 (549)
T ss_dssp             CCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCC
T ss_pred             cccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccc
Confidence                                                        233333333221111111234667777777777765


Q ss_pred             e-ee--ecchhhhhccccccCCcccEEeccCCCCCCchhh----hhhcCCCcEEEeecCcccccccc
Q 038877          228 E-MK--IDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTW----LVFAQNLKELRIDSCYDVEEIIS  287 (298)
Q Consensus       228 ~-~~--~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----l~~~~~L~~L~l~~c~~l~~~~~  287 (298)
                      . ..  ...+        ..+++|+.|++++| .++.++.    +..+++|++|++++| .++.++.
T Consensus       348 ~~~~~~~~~~--------~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~  404 (549)
T 2z81_A          348 EEYLKNSACK--------GAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPD  404 (549)
T ss_dssp             HHHHHHHTCT--------TSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCS
T ss_pred             cccccchhhh--------hccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCCh
Confidence            5 21  1112        56899999999999 7887653    577999999999998 5556553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.88  E-value=3.2e-22  Score=169.96  Aligned_cols=222  Identities=21%  Similarity=0.279  Sum_probs=146.3

Q ss_pred             CCCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeee
Q 038877            6 WEGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLD   83 (298)
Q Consensus         6 ~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~   83 (298)
                      .++++.|++++|.+..++  .+..+++|++|++++|.+..+++..+..+++|++|++++| .+..+|..+.  ++|++|+
T Consensus        53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~  129 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELR  129 (332)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEE
T ss_pred             CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEE
Confidence            368999999999998854  4688999999999999998775555899999999999999 8888887654  7999999


Q ss_pred             ccCCcccccch-hhcCCCcccEEeccCCccCC--CCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh
Q 038877           84 LSWTRIRGLPQ-ELKALEKLRYLSLEGTRHLS--IIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL  160 (298)
Q Consensus        84 l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  160 (298)
                      +++|.+..++. .+..+++|+.|++++|....  ..+. .+..+ +|+.|++++|.+..                ++..+
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l-~L~~L~l~~n~l~~----------------l~~~~  191 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG-AFDGL-KLNYLRISEAKLTG----------------IPKDL  191 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT-SSCSC-CCSCCBCCSSBCSS----------------CCSSS
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc-cccCC-ccCEEECcCCCCCc----------------cCccc
Confidence            99999987774 58899999999999985431  3333 36666 88888888887743                11111


Q ss_pred             cCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhcc
Q 038877          161 LGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKL  240 (298)
Q Consensus       161 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  240 (298)
                        .++|+.|+++++.......  ......++|+.|++++|.........+..+++|+.|++++|.+..++.. +      
T Consensus       192 --~~~L~~L~l~~n~i~~~~~--~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l------  260 (332)
T 2ft3_A          192 --PETLNELHLDHNKIQAIEL--EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-L------  260 (332)
T ss_dssp             --CSSCSCCBCCSSCCCCCCT--TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT-G------
T ss_pred             --cCCCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh-h------
Confidence              1455555555554332210  1122234455555555554444444455555555555555555442221 1      


Q ss_pred             ccccCCcccEEeccCCCCCCch
Q 038877          241 FRSGFRSLNTVSVDYCQKAKDL  262 (298)
Q Consensus       241 ~~~~~~~L~~L~l~~c~~l~~l  262 (298)
                        ..+++|+.|++++| .++.+
T Consensus       261 --~~l~~L~~L~l~~N-~l~~~  279 (332)
T 2ft3_A          261 --PDLKLLQVVYLHTN-NITKV  279 (332)
T ss_dssp             --GGCTTCCEEECCSS-CCCBC
T ss_pred             --hcCccCCEEECCCC-CCCcc
Confidence              24555555555555 44444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.88  E-value=4e-22  Score=189.06  Aligned_cols=133  Identities=20%  Similarity=0.304  Sum_probs=110.3

Q ss_pred             CCCccEEEeecCCCcCC-C-CCCCCCcccEEEecCCc-ccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCe
Q 038877            6 WEGAKRISLMKTGIQSP-S-EIPTCPRLVTFLLDGNW-IEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHH   81 (298)
Q Consensus         6 ~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~   81 (298)
                      .+++++|++++|.++.+ + .+..+++|++|++++|. +..+++..+..+++|++|++++| .+..+ |..++.+++|++
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCC
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCE
Confidence            47899999999999884 3 56899999999999994 44775555899999999999999 77755 788999999999


Q ss_pred             eeccCCcccc-cchh--hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcc
Q 038877           82 LDLSWTRIRG-LPQE--LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWS  139 (298)
Q Consensus        82 L~l~~~~~~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  139 (298)
                      |++++|.+.. ++..  ++.+++|++|++++|...+..+...++++++|+.|++++|.+..
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            9999998874 5544  88999999999999965554443348999999999999998754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.88  E-value=7.2e-22  Score=183.31  Aligned_cols=273  Identities=16%  Similarity=0.125  Sum_probs=174.5

Q ss_pred             CcccCCCccEEEeecCCCcCCCC--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccC
Q 038877            2 KVEEWEGAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVS   78 (298)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~   78 (298)
                      .|+++++|++|++++|.+.+++.  +..+++|++|++++|.+..++...+..+++|++|++++| .+..++ ..++.+++
T Consensus        44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~  122 (680)
T 1ziw_A           44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKN  122 (680)
T ss_dssp             GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTT
T ss_pred             HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccccCC
Confidence            37888999999999999888543  378999999999999988888766889999999999999 777665 57889999


Q ss_pred             CCeeeccCCccccc-chhhcCCCcccEEeccCCccCCCCchhhhc--CCCcccEEEeeccCCccccccc--------ccc
Q 038877           79 LHHLDLSWTRIRGL-PQELKALEKLRYLSLEGTRHLSIIPHQLIS--GFSKLEVLRLLWCGLWSRKEQE--------EGS  147 (298)
Q Consensus        79 L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~--------~~~  147 (298)
                      |++|++++|.+... +..++++++|++|++++|.. ..++...++  .+++|+.|++++|.+.......        ...
T Consensus       123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  201 (680)
T 1ziw_A          123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF  201 (680)
T ss_dssp             CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC-CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEE
T ss_pred             CCEEECCCCcccccCchhhcccccCCEEEccCCcc-cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhh
Confidence            99999999988754 45678899999999999854 444433233  5688999999988774321110        000


Q ss_pred             ccccC-----chhHHHhhcCCCCccEEEEEecCccchhhhccccccc--cceeEEEEeccCCCCccccccccccccccee
Q 038877          148 VLYDD-----AEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLL--SITQSVGVYFCQSPPLNVLHLAYMENLQELV  220 (298)
Q Consensus       148 ~~~~~-----~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  220 (298)
                      +....     .......+ ..++|+.++++++.......  ......  ++|++|++++|.........+..+++|++|+
T Consensus       202 l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~--~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  278 (680)
T 1ziw_A          202 LNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSN--TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF  278 (680)
T ss_dssp             CTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECT--TTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccccChhhHHHHHHHh-hhccccEEEccCCcccccCh--hHhhccCcCCCCEEECCCCCcCccCcccccCcccccEee
Confidence            00000     00111111 23567777776655433211  111111  3377777777765555555667777777777


Q ss_pred             cccCCcceeeecchhh--------------hh-----cc------ccccCCcccEEeccCCCCCCchh--hhhhcCCCcE
Q 038877          221 ILNSDLEEMKIDSAEE--------------VK-----KL------FRSGFRSLNTVSVDYCQKAKDLT--WLVFAQNLKE  273 (298)
Q Consensus       221 l~~~~~~~~~~~~~~~--------------~~-----~~------~~~~~~~L~~L~l~~c~~l~~l~--~l~~~~~L~~  273 (298)
                      +++|.+.......+..              +.     .+      .-..+++|+.|++++| .++.++  .+..+++|++
T Consensus       279 L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~  357 (680)
T 1ziw_A          279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKY  357 (680)
T ss_dssp             CCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCE
T ss_pred             CCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCChhHhccccCCcE
Confidence            7777666533322200              00     00      0134566666666666 455442  2456777777


Q ss_pred             EEeecCc
Q 038877          274 LRIDSCY  280 (298)
Q Consensus       274 L~l~~c~  280 (298)
                      |++.+|.
T Consensus       358 L~Ls~n~  364 (680)
T 1ziw_A          358 LSLSNSF  364 (680)
T ss_dssp             EECTTCB
T ss_pred             EECCCCc
Confidence            7777764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.88  E-value=3.8e-22  Score=181.40  Aligned_cols=128  Identities=26%  Similarity=0.311  Sum_probs=58.2

Q ss_pred             CccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeeec
Q 038877            8 GAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLDL   84 (298)
Q Consensus         8 ~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l   84 (298)
                      +++.|++++|.++.++  .+..+++|++|++++|.+..+++..+..+++|++|++++| .+..++ ..++.+++|++|++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEEC
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccc
Confidence            3455555555544432  2344555555555555444444333444555555555555 343332 34444555555555


Q ss_pred             cCCcccccch-hhcCCCcccEEeccCCccCC-CCchhhhcCCCcccEEEeeccCC
Q 038877           85 SWTRIRGLPQ-ELKALEKLRYLSLEGTRHLS-IIPHQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus        85 ~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~  137 (298)
                      ++|.+..++. .++.+++|++|++++|.... .+|.. ++++++|++|++++|.+
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l  161 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKI  161 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCcc
Confidence            5544444432 24444455555554442222 13332 44444455554444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.88  E-value=1.1e-23  Score=177.48  Aligned_cols=246  Identities=13%  Similarity=0.059  Sum_probs=189.2

Q ss_pred             ccCCCccEEEeecCCCcCCCC-CCCCCcccEEEecCCccc--ccCchHHh-------cCCCccEEEccCCcCCc-cCCcc
Q 038877            4 EEWEGAKRISLMKTGIQSPSE-IPTCPRLVTFLLDGNWIE--EITDGFFR-------SMSSLRVLSLRRNLALS-KLPSG   72 (298)
Q Consensus         4 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~--~~~~~~~~-------~~~~L~~L~l~~~~~~~-~~p~~   72 (298)
                      +..++|+.+++++|.+ .+|. +..  .|+.|++++|.+.  .++.. +.       .+++|++|++++| .+. .+|..
T Consensus        40 ~~~~~L~~l~l~~n~l-~~p~~~~~--~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~  114 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE-ADLGQFTD--IIKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENL-EVTGTAPPP  114 (312)
T ss_dssp             EEEEECTTHHHHCCTT-CCCHHHHH--HHHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCC
T ss_pred             ccCCCceeEeeccccc-ccHHHHHH--HHhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCC-cccchhHHH
Confidence            3455677788888887 5553 222  2899999999885  45554 33       6899999999999 666 67776


Q ss_pred             c--cCccCCCeeeccCCcccccchhhcCC-----CcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccccc
Q 038877           73 I--SNLVSLHHLDLSWTRIRGLPQELKAL-----EKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEE  145 (298)
Q Consensus        73 ~--~~l~~L~~L~l~~~~~~~l~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  145 (298)
                      +  +.+++|++|++++|.++.+|..++.+     ++|++|++++|.. ..++...++++++|++|++++|.+.+      
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~------  187 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELG------  187 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCCCCSSCCEEECCSCTTCH------
T ss_pred             HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhccCCCCCEEECCCCCcCc------
Confidence            5  88999999999999999778777776     8999999999955 55553348999999999999999743      


Q ss_pred             ccccccCchhHHHhh--cCCCCccEEEEEecCccchhhhcc-ccccccceeEEEEeccCCCCcc-cccccccccccceec
Q 038877          146 GSVLYDDAEPLMKEL--LGLKHLNVLSWSLHSSLAVQKFLK-YPKLLSITQSVGVYFCQSPPLN-VLHLAYMENLQELVI  221 (298)
Q Consensus       146 ~~~~~~~~~~~~~~l--~~l~~L~~l~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l  221 (298)
                             ....+..+  ..+++|+.|++++|....+..+.. .....++|+.|++++|...... ...+..+++|+.|++
T Consensus       188 -------~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  260 (312)
T 1wwl_A          188 -------ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL  260 (312)
T ss_dssp             -------HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEEC
T ss_pred             -------chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEEC
Confidence                   22344555  789999999999998765443322 2234578999999999876554 345667899999999


Q ss_pred             ccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchhhhhhcCCCcEEEeecCc
Q 038877          222 LNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCY  280 (298)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~L~~L~l~~c~  280 (298)
                      ++|.+..++.           .-+++|+.|++++| .++.++.+..+++|++|++.+++
T Consensus       261 s~N~l~~ip~-----------~~~~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          261 SFTGLKQVPK-----------GLPAKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             TTSCCSSCCS-----------SCCSEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred             CCCccChhhh-----------hccCCceEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence            9999875321           22389999999999 78888777889999999999874

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.87  E-value=8.2e-22  Score=179.23  Aligned_cols=155  Identities=21%  Similarity=0.254  Sum_probs=113.7

Q ss_pred             CcccCCCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccC
Q 038877            2 KVEEWEGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVS   78 (298)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~   78 (298)
                      +|+++++|++|++++|.+.+++  .+..+++|++|++++|.+..+++..+..+++|++|++++| .+..++. .++.+++
T Consensus        47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~  125 (570)
T 2z63_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKT  125 (570)
T ss_dssp             TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTT
T ss_pred             HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCcccccccc
Confidence            4677888888888888887754  3477888888888888887776555888888888888888 7776654 5788888


Q ss_pred             CCeeeccCCcccc--cchhhcCCCcccEEeccCCccCCCCchhhhcCCCcc----cEEEeeccCCccccccccccccccC
Q 038877           79 LHHLDLSWTRIRG--LPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKL----EVLRLLWCGLWSRKEQEEGSVLYDD  152 (298)
Q Consensus        79 L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~~~  152 (298)
                      |++|++++|.+..  +|..++++++|++|++++|.. ..++...++.+++|    +.+++++|.+..             
T Consensus       126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~-------------  191 (570)
T 2z63_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-------------  191 (570)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC-CEECGGGGHHHHTCTTCCCEEECTTCCCCE-------------
T ss_pred             ccEEecCCCccceecChhhhcccCCCCEEeCcCCcc-ceecHHHccchhccchhhhhcccCCCCcee-------------
Confidence            8888888887774  678888888888888888844 33333336666666    788888887732             


Q ss_pred             chhHHHhhcCCCCccEEEEEec
Q 038877          153 AEPLMKELLGLKHLNVLSWSLH  174 (298)
Q Consensus       153 ~~~~~~~l~~l~~L~~l~l~~~  174 (298)
                        ..+..+... +|+.++++.+
T Consensus       192 --~~~~~~~~~-~L~~L~l~~n  210 (570)
T 2z63_A          192 --IQPGAFKEI-RLHKLTLRNN  210 (570)
T ss_dssp             --ECTTTTTTC-EEEEEEEESC
T ss_pred             --cCHHHhccC-cceeEecccc
Confidence              223333333 6777777765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.87  E-value=2.5e-21  Score=160.93  Aligned_cols=221  Identities=17%  Similarity=0.137  Sum_probs=180.9

Q ss_pred             cEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeeeccCCccccc-chhhcCCCcccEEeccC
Q 038877           32 VTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLDLSWTRIRGL-PQELKALEKLRYLSLEG  109 (298)
Q Consensus        32 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~  109 (298)
                      ++++.+++.+..+|..   ..++|++|+++++ .+..++ ..+..+++|++|++++|.++.+ +..+..+++|++|++++
T Consensus        14 ~~~~c~~~~l~~ip~~---~~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVG---IPAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSSCCTT---CCTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcccCCcC---CCCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            6788888888888764   3578999999999 888775 5689999999999999999866 67799999999999999


Q ss_pred             CccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccc
Q 038877          110 TRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLL  189 (298)
Q Consensus       110 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~  189 (298)
                      |..+..++...+.++++|+.|++++|.+..               ..+..+..+++|+.|+++++.......  ......
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l  152 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQE---------------LGPGLFRGLAALQYLYLQDNALQALPD--DTFRDL  152 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCC---------------CCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCE---------------ECHhHhhCCcCCCEEECCCCcccccCH--hHhccC
Confidence            964666654458999999999999999843               345667889999999999987654332  123446


Q ss_pred             cceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh--hhhh
Q 038877          190 SITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT--WLVF  267 (298)
Q Consensus       190 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~  267 (298)
                      ++|+.|++++|.........+..+++|+.|++++|.+.......+        ..+++|+.|++++| .++.++  .+..
T Consensus       153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~l~~n-~l~~~~~~~~~~  223 (285)
T 1ozn_A          153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF--------RDLGRLMTLYLFAN-NLSALPTEALAP  223 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--------TTCTTCCEEECCSS-CCSCCCHHHHTT
T ss_pred             CCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHc--------cCcccccEeeCCCC-cCCcCCHHHccc
Confidence            789999999997766666678899999999999999888655555        57899999999999 777775  3678


Q ss_pred             cCCCcEEEeecCccc
Q 038877          268 AQNLKELRIDSCYDV  282 (298)
Q Consensus       268 ~~~L~~L~l~~c~~l  282 (298)
                      +++|++|++.+++-.
T Consensus       224 l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          224 LRALQYLRLNDNPWV  238 (285)
T ss_dssp             CTTCCEEECCSSCEE
T ss_pred             CcccCEEeccCCCcc
Confidence            999999999998543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.87  E-value=3.5e-21  Score=182.62  Aligned_cols=115  Identities=21%  Similarity=0.203  Sum_probs=89.7

Q ss_pred             CcccCCCccEEEeecCCCc-CC-C-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCcc-CCcc--ccC
Q 038877            2 KVEEWEGAKRISLMKTGIQ-SP-S-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSK-LPSG--ISN   75 (298)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~-~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~p~~--~~~   75 (298)
                      +|+++++|++|++++|... .+ | .+..+++|++|++++|.+..+.+..+..+++|++|++++| .+.. +|..  ++.
T Consensus        43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~  121 (844)
T 3j0a_A           43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRN  121 (844)
T ss_dssp             SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSS
T ss_pred             HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccc
Confidence            4788899999999998543 34 3 4588999999999999888665545889999999999999 6653 4543  888


Q ss_pred             ccCCCeeeccCCccccc--chhhcCCCcccEEeccCCccCCCCc
Q 038877           76 LVSLHHLDLSWTRIRGL--PQELKALEKLRYLSLEGTRHLSIIP  117 (298)
Q Consensus        76 l~~L~~L~l~~~~~~~l--~~~~~~l~~L~~L~l~~~~~~~~~~  117 (298)
                      +++|++|++++|.+..+  +..++++++|++|++++|......+
T Consensus       122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~  165 (844)
T 3j0a_A          122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE  165 (844)
T ss_dssp             CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred             cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence            99999999999988754  3568899999999998885444333

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.87  E-value=4.8e-23  Score=173.95  Aligned_cols=242  Identities=14%  Similarity=0.099  Sum_probs=177.3

Q ss_pred             cCCCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877            5 EWEGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL   82 (298)
Q Consensus         5 ~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L   82 (298)
                      .+++|++|++++|.+..++  .+..+++|++|++++|.+..+++  +..+++|++|++++| .+..++    ..++|++|
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~L  104 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELL----VGPSIETL  104 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEE----ECTTCCEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-cccccc----CCCCcCEE
Confidence            4568899999998888865  34788899999999998876554  778889999999988 666554    33788999


Q ss_pred             eccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh-c
Q 038877           83 DLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL-L  161 (298)
Q Consensus        83 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~  161 (298)
                      ++++|.+..++..  .+++|+.|++++|.. ..++...++.+++|+.|++++|.+..               ..+..+ .
T Consensus       105 ~l~~n~l~~~~~~--~~~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~~~~  166 (317)
T 3o53_A          105 HAANNNISRVSCS--RGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDT---------------VNFAELAA  166 (317)
T ss_dssp             ECCSSCCSEEEEC--CCSSCEEEECCSSCC-CSGGGBCTGGGSSEEEEECTTSCCCE---------------EEGGGGGG
T ss_pred             ECCCCccCCcCcc--ccCCCCEEECCCCCC-CCccchhhhccCCCCEEECCCCCCCc---------------ccHHHHhh
Confidence            9999888866533  367899999998844 44544347888999999999988842               233334 3


Q ss_pred             CCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccc
Q 038877          162 GLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLF  241 (298)
Q Consensus       162 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  241 (298)
                      .+++|+.|++++|....+...    ...++|+.|++++|....... .+..+++|+.|++++|.+..++.. +       
T Consensus       167 ~l~~L~~L~L~~N~l~~~~~~----~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l~~~-~-------  233 (317)
T 3o53_A          167 SSDTLEHLNLQYNFIYDVKGQ----VVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKA-L-------  233 (317)
T ss_dssp             GTTTCCEEECTTSCCCEEECC----CCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTT-C-------
T ss_pred             ccCcCCEEECCCCcCcccccc----cccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccchhhH-h-------
Confidence            678899999988876554322    235788999999987654333 377889999999999988765332 2       


Q ss_pred             cccCCcccEEeccCCCCCC--ch-hhhhhcCCCcEEEeecCccccccc
Q 038877          242 RSGFRSLNTVSVDYCQKAK--DL-TWLVFAQNLKELRIDSCYDVEEII  286 (298)
Q Consensus       242 ~~~~~~L~~L~l~~c~~l~--~l-~~l~~~~~L~~L~l~~c~~l~~~~  286 (298)
                       ..+++|+.|++++| .+.  .+ .++..+++|+.+++.++..++...
T Consensus       234 -~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~  279 (317)
T 3o53_A          234 -RFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN  279 (317)
T ss_dssp             -CCCTTCCEEECTTC-CCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred             -hcCCCCCEEEccCC-CccCcCHHHHHhccccceEEECCCchhccCCc
Confidence             46789999999998 444  23 345678888888888766655443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=4.6e-21  Score=161.06  Aligned_cols=198  Identities=21%  Similarity=0.290  Sum_probs=159.9

Q ss_pred             cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877            3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL   82 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L   82 (298)
                      .+++++|+.|++.++.+..++.+..+++|++|++++|.+..++.  +..+++|++|++++| .+..++ .+..+++|++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L  112 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTL  112 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEE
T ss_pred             HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEE
Confidence            34578899999999999888888889999999999998887776  788999999999999 777775 57889999999


Q ss_pred             eccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcC
Q 038877           83 DLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLG  162 (298)
Q Consensus        83 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  162 (298)
                      ++++|.++.++. +..+++|++|++++| .+..++.  ++.+++|+.|++++|.+..                ++. +..
T Consensus       113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~----------------~~~-l~~  171 (308)
T 1h6u_A          113 DLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSD----------------LTP-LAN  171 (308)
T ss_dssp             ECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCC----------------CGG-GTT
T ss_pred             ECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCC----------------Chh-hcC
Confidence            999999888765 888999999999998 4455555  7889999999999998843                222 778


Q ss_pred             CCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeee
Q 038877          163 LKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKI  231 (298)
Q Consensus       163 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  231 (298)
                      +++|+.|+++++....+..    ....++|+.|++++|......  .+..+++|+.|++++|.+...+.
T Consensus       172 l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          172 LSKLTTLKADDNKISDISP----LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG----GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred             CCCCCEEECCCCccCcChh----hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence            8999999999887765443    334577899999988765444  47888899999999988766433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=4.1e-21  Score=155.53  Aligned_cols=203  Identities=15%  Similarity=0.158  Sum_probs=128.8

Q ss_pred             CcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCC
Q 038877            2 KVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLH   80 (298)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~   80 (298)
                      ..+.|...+.+.+.+..++.+|.  -.+++++|++++|.+..++...+..+++|++|++++|..++.++. .+..+++|+
T Consensus         6 ~~C~C~~~~~~~v~c~~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~   83 (239)
T 2xwt_C            6 PPCECHQEEDFRVTCKDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT   83 (239)
T ss_dssp             SSCSEEECSTTEEEECSCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCC
T ss_pred             CCCeeCCCCcceeEccCccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCc
Confidence            34444432333444444677776  345899999999988887776688899999999998832776654 678888999


Q ss_pred             eeeccC-Ccccccc-hhhcCCCcccEEeccCCccCCCCchhhhcCCCccc---EEEeecc-CCccccccccccccccCch
Q 038877           81 HLDLSW-TRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLE---VLRLLWC-GLWSRKEQEEGSVLYDDAE  154 (298)
Q Consensus        81 ~L~l~~-~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~  154 (298)
                      +|++++ |.++.++ ..+..+++|++|++++|. +..+|.  +..+++|+   .|++++| .+..               
T Consensus        84 ~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~---------------  145 (239)
T 2xwt_C           84 HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD--LTKVYSTDIFFILEITDNPYMTS---------------  145 (239)
T ss_dssp             EEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC--CTTCCBCCSEEEEEEESCTTCCE---------------
T ss_pred             EEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc--cccccccccccEEECCCCcchhh---------------
Confidence            999988 7888776 457788888888888884 455665  67777777   8888888 6632               


Q ss_pred             hHHHhhcCCCCcc-EEEEEecCccchhhhccccccccceeEEEEeccC-CCCccccccccc-ccccceecccCCcc
Q 038877          155 PLMKELLGLKHLN-VLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQ-SPPLNVLHLAYM-ENLQELVILNSDLE  227 (298)
Q Consensus       155 ~~~~~l~~l~~L~-~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l-~~L~~L~l~~~~~~  227 (298)
                      .....+..+++|+ .++++++....++..  .... +.|+.|++.+|. ........+..+ ++|+.|++++|.+.
T Consensus       146 i~~~~~~~l~~L~~~L~l~~n~l~~i~~~--~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          146 IPVNAFQGLCNETLTLKLYNNGFTSVQGY--AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             ECTTTTTTTBSSEEEEECCSCCCCEECTT--TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             cCcccccchhcceeEEEcCCCCCcccCHh--hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence            2223456677777 777766654332210  0111 345555555552 333333334444 45555555554443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.85  E-value=1e-21  Score=165.70  Aligned_cols=236  Identities=14%  Similarity=0.085  Sum_probs=180.6

Q ss_pred             ccEEEeecCCCcCCC-CC-CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccC
Q 038877            9 AKRISLMKTGIQSPS-EI-PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSW   86 (298)
Q Consensus         9 L~~L~l~~~~~~~~~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~   86 (298)
                      ++..+++.+.+...+ .+ ..+++|++|++++|.+..+++..+..+++|++|++++| .+...++ +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcC
Confidence            334444444444321 22 56789999999999999887666999999999999999 7776654 88999999999999


Q ss_pred             CcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCc
Q 038877           87 TRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHL  166 (298)
Q Consensus        87 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L  166 (298)
                      |.++.++.    .++|++|++++|. +..++.   ..+++|+.|++++|.+..               ..+..+..+++|
T Consensus        90 n~l~~l~~----~~~L~~L~l~~n~-l~~~~~---~~~~~L~~L~l~~N~l~~---------------~~~~~~~~l~~L  146 (317)
T 3o53_A           90 NYVQELLV----GPSIETLHAANNN-ISRVSC---SRGQGKKNIYLANNKITM---------------LRDLDEGCRSRV  146 (317)
T ss_dssp             SEEEEEEE----CTTCCEEECCSSC-CSEEEE---CCCSSCEEEECCSSCCCS---------------GGGBCTGGGSSE
T ss_pred             CccccccC----CCCcCEEECCCCc-cCCcCc---cccCCCCEEECCCCCCCC---------------ccchhhhccCCC
Confidence            99887663    4899999999994 444443   457899999999999843               334567778999


Q ss_pred             cEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCC
Q 038877          167 NVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFR  246 (298)
Q Consensus       167 ~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  246 (298)
                      +.|+++++....... .......+.|++|++++|.....  .....+++|+.|++++|.+..++.. +        ..++
T Consensus       147 ~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~-~--------~~l~  214 (317)
T 3o53_A          147 QYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE-F--------QSAA  214 (317)
T ss_dssp             EEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG-G--------GGGT
T ss_pred             CEEECCCCCCCcccH-HHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchhh-h--------cccC
Confidence            999999887654321 11122357899999999976444  3344589999999999999886544 3        4689


Q ss_pred             cccEEeccCCCCCCchhh-hhhcCCCcEEEeecCccc
Q 038877          247 SLNTVSVDYCQKAKDLTW-LVFAQNLKELRIDSCYDV  282 (298)
Q Consensus       247 ~L~~L~l~~c~~l~~l~~-l~~~~~L~~L~l~~c~~l  282 (298)
                      +|+.|++++| .++.++. +..+++|++|++.+++-.
T Consensus       215 ~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          215 GVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             TCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             cccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence            9999999999 7887753 567899999999998654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=6.6e-22  Score=176.29  Aligned_cols=233  Identities=14%  Similarity=0.095  Sum_probs=169.6

Q ss_pred             cCCCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877            5 EWEGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL   82 (298)
Q Consensus         5 ~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L   82 (298)
                      .+++|+.|++++|.+..++  .+..+++|++|++++|.+...++  +..+++|++|++++| .+..+|.    .++|++|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEE
Confidence            3558899999999888865  45788999999999998875555  778889999999998 7766553    3788999


Q ss_pred             eccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhc-
Q 038877           83 DLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELL-  161 (298)
Q Consensus        83 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-  161 (298)
                      ++++|.+..++..  .+++|+.|++++|...+..|. .++++++|+.|++++|.+.+               ..+..+. 
T Consensus       105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~---------------~~~~~l~~  166 (487)
T 3oja_A          105 HAANNNISRVSCS--RGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDT---------------VNFAELAA  166 (487)
T ss_dssp             ECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCE---------------EEGGGGGG
T ss_pred             ECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCC---------------cChHHHhh
Confidence            9999888866543  467899999998855444344 37888999999999988832               3444554 


Q ss_pred             CCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccc
Q 038877          162 GLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLF  241 (298)
Q Consensus       162 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  241 (298)
                      .+++|+.|++++|........    ...+.|+.|++++|...... ..+..+++|+.|++++|.+..++.. +       
T Consensus       167 ~l~~L~~L~Ls~N~l~~~~~~----~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~lp~~-l-------  233 (487)
T 3oja_A          167 SSDTLEHLNLQYNFIYDVKGQ----VVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEKA-L-------  233 (487)
T ss_dssp             GTTTCCEEECTTSCCCEEECC----CCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCEECTT-C-------
T ss_pred             hCCcccEEecCCCcccccccc----ccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcccchh-h-------
Confidence            678899999988876554321    23578889999988765433 3477888999999999888764332 2       


Q ss_pred             cccCCcccEEeccCCCCCC--chh-hhhhcCCCcEEEee
Q 038877          242 RSGFRSLNTVSVDYCQKAK--DLT-WLVFAQNLKELRID  277 (298)
Q Consensus       242 ~~~~~~L~~L~l~~c~~l~--~l~-~l~~~~~L~~L~l~  277 (298)
                       ..+++|+.|++++|+ +.  .++ ++..++.|+.+.+.
T Consensus       234 -~~l~~L~~L~l~~N~-l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          234 -RFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             -CCCTTCCEEECTTCC-BCHHHHHHHHTTCHHHHHHHHH
T ss_pred             -ccCCCCCEEEcCCCC-CcCcchHHHHHhCCCCcEEecc
Confidence             467889999999884 44  232 34556666666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.84  E-value=5.9e-20  Score=167.38  Aligned_cols=238  Identities=18%  Similarity=0.134  Sum_probs=121.8

Q ss_pred             CccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCC
Q 038877            8 GAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWT   87 (298)
Q Consensus         8 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~   87 (298)
                      +++.|+++++.++.+|.... ++|++|++++|.+..+|.    .+++|++|++++| .++.+|.   .+++|++|++++|
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N  111 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN  111 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC
T ss_pred             CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC
Confidence            45666666666666554322 566666666666655554    3456666666666 5555554   4455666666666


Q ss_pred             cccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccc----ccccccccCchhHHHhhcCC
Q 038877           88 RIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ----EEGSVLYDDAEPLMKELLGL  163 (298)
Q Consensus        88 ~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~l  163 (298)
                      .++.+|.   .+++|+.|++++| .+..+|..    +++|++|++++|.+......    ....+..+....++   ..+
T Consensus       112 ~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~  180 (622)
T 3g06_A          112 PLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP---MLP  180 (622)
T ss_dssp             CCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC---CCC
T ss_pred             cCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCc---ccC
Confidence            5555554   3445555555555 23334331    24555555555544320000    00000000000011   223


Q ss_pred             CCccEEEEEecCccchhhhcc--------------ccccccceeEEEEeccCCCCcccccccccccccceecccCCccee
Q 038877          164 KHLNVLSWSLHSSLAVQKFLK--------------YPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEM  229 (298)
Q Consensus       164 ~~L~~l~l~~~~~~~~~~~~~--------------~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  229 (298)
                      ++|+.|++++|....++....              .....++|+.|++++|......    ..+++|+.|++++|.+..+
T Consensus       181 ~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~l  256 (622)
T 3g06_A          181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSL  256 (622)
T ss_dssp             TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC
T ss_pred             CCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcC
Confidence            566666666555433221110              0011234555555555433221    2345666666666655542


Q ss_pred             eecchhhhhccccccCCcccEEeccCCCCCCchh-hhhhcCCCcEEEeecCccc
Q 038877          230 KIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT-WLVFAQNLKELRIDSCYDV  282 (298)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~~~~L~~L~l~~c~~l  282 (298)
                      +            ..+++|+.|++++| .++.+| .+..+++|+.|++.+++.-
T Consensus       257 p------------~~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          257 P------------MLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             C------------CCCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred             C------------cccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCC
Confidence            2            14678888888888 677775 3677888888888887643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.84  E-value=9.2e-20  Score=161.00  Aligned_cols=118  Identities=18%  Similarity=0.198  Sum_probs=59.5

Q ss_pred             CccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCC
Q 038877            8 GAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWT   87 (298)
Q Consensus         8 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~   87 (298)
                      +|++|++++|.+.++|.+..+++|++|++++|.+..+|..    ..+|++|++++| .+..+| .++.+++|++|++++|
T Consensus       132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS
T ss_pred             CCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC
Confidence            4445555555444444444455555555555544443332    134555555555 444444 3455555555555555


Q ss_pred             cccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCC
Q 038877           88 RIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus        88 ~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  137 (298)
                      .+..+|...   ++|++|++++| .+..+|.  ++++++|+.|++++|.+
T Consensus       206 ~l~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l  249 (454)
T 1jl5_A          206 SLKKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLL  249 (454)
T ss_dssp             CCSSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCC
T ss_pred             cCCcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcC
Confidence            555444321   35555555555 2334553  55666666666666655

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=7.7e-20  Score=153.57  Aligned_cols=204  Identities=20%  Similarity=0.270  Sum_probs=137.0

Q ss_pred             cCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchh
Q 038877           16 KTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQE   95 (298)
Q Consensus        16 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~   95 (298)
                      .+.+.++.....+++|++|++++|.+..++.  +..+++|++|++++| .+..++. +..+++|++|++++|.++.++ .
T Consensus        28 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~  102 (308)
T 1h6u_A           28 KSNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-A  102 (308)
T ss_dssp             CSSTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-G
T ss_pred             CCCcCceecHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-h
Confidence            3333343334567788888888888777663  778888888888888 7777766 778888888888888887765 5


Q ss_pred             hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecC
Q 038877           96 LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHS  175 (298)
Q Consensus        96 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~  175 (298)
                      +..+++|++|++++|. +..++.  +..+++|+.|++++|.+..                .+ .+..+++|+.|+++++.
T Consensus       103 ~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~----------------~~-~l~~l~~L~~L~l~~n~  162 (308)
T 1h6u_A          103 IAGLQSIKTLDLTSTQ-ITDVTP--LAGLSNLQVLYLDLNQITN----------------IS-PLAGLTNLQYLSIGNAQ  162 (308)
T ss_dssp             GTTCTTCCEEECTTSC-CCCCGG--GTTCTTCCEEECCSSCCCC----------------CG-GGGGCTTCCEEECCSSC
T ss_pred             hcCCCCCCEEECCCCC-CCCchh--hcCCCCCCEEECCCCccCc----------------Cc-cccCCCCccEEEccCCc
Confidence            7778888888888884 455554  7888888888888887743                11 16677778888887776


Q ss_pred             ccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccC
Q 038877          176 SLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDY  255 (298)
Q Consensus       176 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  255 (298)
                      ......    ...+++|+.|++++|......  .+..+++|+.|++++|.+..+.  .+        ..+++|+.|++++
T Consensus       163 l~~~~~----l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~--~l--------~~l~~L~~L~l~~  226 (308)
T 1h6u_A          163 VSDLTP----LANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS--PL--------ANTSNLFIVTLTN  226 (308)
T ss_dssp             CCCCGG----GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCG--GG--------TTCTTCCEEEEEE
T ss_pred             CCCChh----hcCCCCCCEEECCCCccCcCh--hhcCCCCCCEEEccCCccCccc--cc--------cCCCCCCEEEccC
Confidence            544332    233456677777766544332  2566667777777776665532  12        3566677777666


Q ss_pred             CCCCCc
Q 038877          256 CQKAKD  261 (298)
Q Consensus       256 c~~l~~  261 (298)
                      | .++.
T Consensus       227 N-~i~~  231 (308)
T 1h6u_A          227 Q-TITN  231 (308)
T ss_dssp             E-EEEC
T ss_pred             C-eeec
Confidence            6 3443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.83  E-value=9.8e-20  Score=150.10  Aligned_cols=151  Identities=21%  Similarity=0.241  Sum_probs=104.8

Q ss_pred             CccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeeeccC
Q 038877            8 GAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLDLSW   86 (298)
Q Consensus         8 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~   86 (298)
                      +.+.++++++.++.+|... .+++++|++++|.+..++...+..+++|++|++++| .+..+|. .+..+++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence            4677888888877776432 267888888888877776655778888888888888 7776654 356788888888888


Q ss_pred             Ccccccch-hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCC
Q 038877           87 TRIRGLPQ-ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKH  165 (298)
Q Consensus        87 ~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  165 (298)
                      |.+..++. .+..+++|++|++++|. +..++...++++++|+.|++++|.+..               .....+..+++
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~---------------~~~~~~~~l~~  158 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQS---------------LPKGVFDKLTS  158 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC---------------CCTTTTTTCTT
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCc---------------cCHhHccCCcc
Confidence            87776664 45777888888888873 445554446778888888888877732               12233555666


Q ss_pred             ccEEEEEecCc
Q 038877          166 LNVLSWSLHSS  176 (298)
Q Consensus       166 L~~l~l~~~~~  176 (298)
                      |+.|+++++..
T Consensus       159 L~~L~L~~n~l  169 (270)
T 2o6q_A          159 LKELRLYNNQL  169 (270)
T ss_dssp             CCEEECCSSCC
T ss_pred             cceeEecCCcC
Confidence            66666665543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.83  E-value=2.9e-20  Score=153.74  Aligned_cols=218  Identities=17%  Similarity=0.107  Sum_probs=135.8

Q ss_pred             EEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeeeccCCcc
Q 038877           11 RISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLDLSWTRI   89 (298)
Q Consensus        11 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~   89 (298)
                      .++..+..+..+|... .++|++|++++|.+..++...+..+++|++|++++| .+..++ ..+..+++|++|++++|.+
T Consensus        11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             eEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCcc
Confidence            3444455555555421 246777777777777666544777777777777777 666554 3567777777777777777


Q ss_pred             cccc-hhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccE
Q 038877           90 RGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNV  168 (298)
Q Consensus        90 ~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  168 (298)
                      ..++ ..+..+++|++|++++|.. ..++...++++++|++|++++|.+..              ..++..+..+++|+.
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~l~~~~~~l~~L~~  153 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQS--------------FKLPEYFSNLTNLEH  153 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCC-CCSTTCCCTTCTTCCEEECCSSCCCC--------------CCCCGGGGGCTTCCE
T ss_pred             CccChhhhcCCccccEEECCCCCc-cccCchhcccCCCCCEEECcCCccce--------------ecCchhhccCCCCCE
Confidence            7554 4577777777777777743 33443236777777777777777631              123556667777777


Q ss_pred             EEEEecCccchhhhcccccccccee----EEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhcccccc
Q 038877          169 LSWSLHSSLAVQKFLKYPKLLSITQ----SVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSG  244 (298)
Q Consensus       169 l~l~~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  244 (298)
                      |+++++....+..  ........++    .|++++|.........+. ..+|+.|++++|.+..++...+        ..
T Consensus       154 L~Ls~N~l~~~~~--~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~--------~~  222 (276)
T 2z62_A          154 LDLSSNKIQSIYC--TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIF--------DR  222 (276)
T ss_dssp             EECCSSCCCEECG--GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTT--------TT
T ss_pred             EECCCCCCCcCCH--HHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHh--------cc
Confidence            7777776543221  1111122233    677777765433333332 3478888888888776554444        46


Q ss_pred             CCcccEEeccCC
Q 038877          245 FRSLNTVSVDYC  256 (298)
Q Consensus       245 ~~~L~~L~l~~c  256 (298)
                      +++|+.|+++++
T Consensus       223 l~~L~~L~l~~N  234 (276)
T 2z62_A          223 LTSLQKIWLHTN  234 (276)
T ss_dssp             CCSCCEEECCSS
T ss_pred             cccccEEEccCC
Confidence            788888888865

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=1.9e-21  Score=165.43  Aligned_cols=247  Identities=16%  Similarity=0.157  Sum_probs=165.9

Q ss_pred             CccEEEeecCCCcCCCCCCCC--CcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCcc--CCccccCccCCCeee
Q 038877            8 GAKRISLMKTGIQSPSEIPTC--PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSK--LPSGISNLVSLHHLD   83 (298)
Q Consensus         8 ~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~   83 (298)
                      .++.++++++.+.. ..+..+  ++++.|++.++.+...+.. +..+++|++|++++| .+..  +|..+..+++|++|+
T Consensus        48 ~~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           48 LWQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             TSSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEE
T ss_pred             hheeeccccccCCH-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEe
Confidence            36677777765542 112333  6788888888877755544 456888888888888 5552  566777888888888


Q ss_pred             ccCCccc-ccchhhcCCCcccEEeccCCccCCC--CchhhhcCCCcccEEEeecc-CCccccccccccccccCchhHHHh
Q 038877           84 LSWTRIR-GLPQELKALEKLRYLSLEGTRHLSI--IPHQLISGFSKLEVLRLLWC-GLWSRKEQEEGSVLYDDAEPLMKE  159 (298)
Q Consensus        84 l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~  159 (298)
                      +++|.+. ..+..++.+++|++|++++|..++.  ++. .+.++++|++|++++| .+.              ...++..
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~--------------~~~~~~~  189 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFT--------------EKHVQVA  189 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCC--------------HHHHHHH
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcC--------------hHHHHHH
Confidence            8888776 5666777888888888888843332  343 3677888888888888 662              2235666


Q ss_pred             hcCCC-CccEEEEEecCc-cchhhhccccccccceeEEEEeccC-CCCcccccccccccccceecccCCcce-eeecchh
Q 038877          160 LLGLK-HLNVLSWSLHSS-LAVQKFLKYPKLLSITQSVGVYFCQ-SPPLNVLHLAYMENLQELVILNSDLEE-MKIDSAE  235 (298)
Q Consensus       160 l~~l~-~L~~l~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~  235 (298)
                      +..++ +|+.|+++++.. .....++.....+++|+.|++++|. ..+.....+..+++|+.|++++|.... ..+..+ 
T Consensus       190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l-  268 (336)
T 2ast_B          190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL-  268 (336)
T ss_dssp             HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG-
T ss_pred             HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH-
Confidence            77788 888888887742 2223333344456788888888887 455556677888999999999886332 333333 


Q ss_pred             hhhccccccCCcccEEeccCCCCCCc--hhhh-hhcCCCcEEEeecCccccccc
Q 038877          236 EVKKLFRSGFRSLNTVSVDYCQKAKD--LTWL-VFAQNLKELRIDSCYDVEEII  286 (298)
Q Consensus       236 ~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~l-~~~~~L~~L~l~~c~~l~~~~  286 (298)
                             ..+++|+.|++++|  +++  +..+ ..+|.|+   +. |..++.+.
T Consensus       269 -------~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~---l~-~n~l~~~~  309 (336)
T 2ast_B          269 -------GEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ---IN-CSHFTTIA  309 (336)
T ss_dssp             -------GGCTTCCEEECTTS--SCTTCHHHHHHHSTTSE---ES-CCCSCCTT
T ss_pred             -------hcCCCCCEEeccCc--cCHHHHHHHHhhCcceE---Ee-cccCcccc
Confidence                   46889999999988  443  3333 2355555   54 44555444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.83  E-value=6.9e-20  Score=152.48  Aligned_cols=204  Identities=17%  Similarity=0.084  Sum_probs=161.9

Q ss_pred             cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877            3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL   82 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L   82 (298)
                      ++++++++.+++.++.++.+|... .+++++|++++|.+..++...+..+++|++|++++| .++.++.. +.+++|++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L   82 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTL   82 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEE
T ss_pred             ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEE
Confidence            577899999999999999987542 378999999999998776666899999999999999 88877654 789999999


Q ss_pred             eccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcC
Q 038877           83 DLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLG  162 (298)
Q Consensus        83 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  162 (298)
                      ++++|.+..+|..+..+++|++|++++| .+..++.+.+.++++|+.|++++|.+..               ..+..+..
T Consensus        83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~---------------~~~~~~~~  146 (290)
T 1p9a_G           83 DLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKT---------------LPPGLLTP  146 (290)
T ss_dssp             ECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCC---------------CCTTTTTT
T ss_pred             ECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCc---------------cChhhccc
Confidence            9999999999998999999999999999 4566665568999999999999999843               23345677


Q ss_pred             CCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcce
Q 038877          163 LKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE  228 (298)
Q Consensus       163 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  228 (298)
                      +++|+.|++++|....+..  ......++|+.|++++|..... +..+...+.|+.|++.+|....
T Consensus       147 l~~L~~L~L~~N~l~~l~~--~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          147 TPKLEKLSLANNNLTELPA--GLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CTTCCEEECTTSCCSCCCT--TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccCCCEEECCCCcCCccCH--HHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccC
Confidence            8899999998886654332  1223457788888888865532 3345556688888888877654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=2e-20  Score=166.71  Aligned_cols=219  Identities=15%  Similarity=0.075  Sum_probs=174.6

Q ss_pred             CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEE
Q 038877           26 PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYL  105 (298)
Q Consensus        26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L  105 (298)
                      ..+++|++|++++|.+..+++..+..+++|++|++++| .+...++ ++.+++|++|++++|.++.++.    .++|+.|
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L  104 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETL  104 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence            45669999999999999877666999999999999999 7776554 8899999999999999887764    3899999


Q ss_pred             eccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccc
Q 038877          106 SLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKY  185 (298)
Q Consensus       106 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~  185 (298)
                      ++++|.. ..++.   ..+++|+.|++++|.+.               ...+..+..+++|+.|++++|....... ...
T Consensus       105 ~L~~N~l-~~~~~---~~l~~L~~L~L~~N~l~---------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l  164 (487)
T 3oja_A          105 HAANNNI-SRVSC---SRGQGKKNIYLANNKIT---------------MLRDLDEGCRSRVQYLDLKLNEIDTVNF-AEL  164 (487)
T ss_dssp             ECCSSCC-CCEEE---CCCSSCEEEECCSSCCC---------------SGGGBCGGGGSSEEEEECTTSCCCEEEG-GGG
T ss_pred             ECcCCcC-CCCCc---cccCCCCEEECCCCCCC---------------CCCchhhcCCCCCCEEECCCCCCCCcCh-HHH
Confidence            9999944 44443   45789999999999994               3445667788999999999987654321 112


Q ss_pred             cccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchhh-
Q 038877          186 PKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTW-  264 (298)
Q Consensus       186 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-  264 (298)
                      ...++.|+.|++++|.....  .....+++|+.|++++|.+..++.. +        ..+++|+.|++++| .++.++. 
T Consensus       165 ~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~--------~~l~~L~~L~Ls~N-~l~~lp~~  232 (487)
T 3oja_A          165 AASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE-F--------QSAAGVTWISLRNN-KLVLIEKA  232 (487)
T ss_dssp             GGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG-G--------GGGTTCSEEECTTS-CCCEECTT
T ss_pred             hhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCCCCHh-H--------cCCCCccEEEecCC-cCcccchh
Confidence            22457899999999976544  3345689999999999999885544 3        47899999999999 7887763 


Q ss_pred             hhhcCCCcEEEeecCccc
Q 038877          265 LVFAQNLKELRIDSCYDV  282 (298)
Q Consensus       265 l~~~~~L~~L~l~~c~~l  282 (298)
                      +..+++|+.|++.+++..
T Consensus       233 l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          233 LRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCCCTTCCEEECTTCCBC
T ss_pred             hccCCCCCEEEcCCCCCc
Confidence            567899999999998654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.82  E-value=1.8e-19  Score=148.48  Aligned_cols=199  Identities=20%  Similarity=0.216  Sum_probs=162.2

Q ss_pred             CcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeeeccCCcccccchh-hcCCCcccEEe
Q 038877           29 PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLDLSWTRIRGLPQE-LKALEKLRYLS  106 (298)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~  106 (298)
                      .+.++++++++.+..+|.. +  .++++.|++++| .+..++. .+..+++|++|++++|.++.++.. +..+++|++|+
T Consensus        16 ~~~~~l~~~~~~l~~ip~~-~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSN-I--PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSC-C--CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred             CCCCEEEccCCCCCccCCC-C--CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence            4578999999999888865 2  368999999999 8887764 789999999999999999988765 58899999999


Q ss_pred             ccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhcccc
Q 038877          107 LEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYP  186 (298)
Q Consensus       107 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~  186 (298)
                      +++| .+..++...+.++++|+.|++++|.+..               ..+..+..+++|+.|+++++....+..  ...
T Consensus        92 l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~  153 (270)
T 2o6q_A           92 VTDN-KLQALPIGVFDQLVNLAELRLDRNQLKS---------------LPPRVFDSLTKLTYLSLGYNELQSLPK--GVF  153 (270)
T ss_dssp             CCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCC---------------CCTTTTTTCTTCCEEECCSSCCCCCCT--TTT
T ss_pred             CCCC-cCCcCCHhHcccccCCCEEECCCCccCe---------------eCHHHhCcCcCCCEEECCCCcCCccCH--hHc
Confidence            9999 4566776668999999999999999843               334557889999999999987654332  123


Q ss_pred             ccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCC
Q 038877          187 KLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQ  257 (298)
Q Consensus       187 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  257 (298)
                      ...++|+.|++++|.........+..+++|+.|++++|.+..++...+        ..+++|+.|++++++
T Consensus       154 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--------~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF--------DSLEKLKMLQLQENP  216 (270)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--------TTCTTCCEEECCSSC
T ss_pred             cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh--------ccccCCCEEEecCCC
Confidence            445889999999998777766678889999999999998877655545        568999999999874

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.82  E-value=1.4e-19  Score=149.64  Aligned_cols=205  Identities=21%  Similarity=0.181  Sum_probs=157.6

Q ss_pred             CCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeee
Q 038877            7 EGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLD   83 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~   83 (298)
                      ++|++|++++|.+..++  .+..+++|++|++++|.+..++...+..+++|++|++++| .+..++ ..+..+++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEE
Confidence            46999999999998865  4588999999999999988777655889999999999999 777654 5788899999999


Q ss_pred             ccCCcccccch-hhcCCCcccEEeccCCccCC-CCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhc
Q 038877           84 LSWTRIRGLPQ-ELKALEKLRYLSLEGTRHLS-IIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELL  161 (298)
Q Consensus        84 l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  161 (298)
                      +++|.+..++. .++.+++|++|++++|.... .+|.. ++++++|+.|++++|.+...            .......+.
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~------------~~~~~~~l~  173 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI------------YCTDLRVLH  173 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEE------------CGGGGHHHH
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcC------------CHHHhhhhh
Confidence            99998887665 58889999999999985433 24654 88999999999999988430            112234445


Q ss_pred             CCCCcc-EEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcce
Q 038877          162 GLKHLN-VLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE  228 (298)
Q Consensus       162 ~l~~L~-~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  228 (298)
                      .++.+. .++++++....+..   ......+|+.|++++|.........+..+++|+.|++++|.+..
T Consensus       174 ~L~~l~l~L~ls~n~l~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          174 QMPLLNLSLDLSLNPMNFIQP---GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             TCTTCCEEEECCSSCCCEECT---TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             hccccceeeecCCCcccccCc---cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            555555 78888877654332   22222478999999998776666667889999999999988764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.82  E-value=6.3e-20  Score=151.41  Aligned_cols=198  Identities=21%  Similarity=0.236  Sum_probs=135.2

Q ss_pred             cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCe
Q 038877            3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHH   81 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~   81 (298)
                      +..+++|+.|++.++.+..++.+..+++|++|++++|.+..++.  +..+++|++|++++| .+..++. .++.+++|++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred             cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchh--hcCCCCCCEEECCCC-ccCccChhHhcCCcCCCE
Confidence            34567788888888888887777788888888888887776542  778888888888888 6766644 4677888888


Q ss_pred             eeccCCcccccchh-hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh
Q 038877           82 LDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL  160 (298)
Q Consensus        82 L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  160 (298)
                      |++++|.++.++.. +..+++|++|++++| .+..++...++++++|+.|++++|.+..               ..+..+
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~  177 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQS---------------LPEGVF  177 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC---------------CCTTTT
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCc---------------cCHHHh
Confidence            88888888766543 677888888888888 4455555556788888888888887732               223345


Q ss_pred             cCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcce
Q 038877          161 LGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE  228 (298)
Q Consensus       161 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  228 (298)
                      ..+++|+.|++++|.......  .....++.|+.|++.+|...       ..+|.|+.|+++.|....
T Consensus       178 ~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g  236 (272)
T 3rfs_A          178 DKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG  236 (272)
T ss_dssp             TTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGG
T ss_pred             cCCccCCEEECCCCcCCccCH--HHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCC
Confidence            667777777777765543221  11233456666666666321       234566666666655544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.82  E-value=2.5e-19  Score=164.64  Aligned_cols=128  Identities=26%  Similarity=0.309  Sum_probs=78.0

Q ss_pred             CccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeeec
Q 038877            8 GAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLDL   84 (298)
Q Consensus         8 ~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l   84 (298)
                      .+++|++++|.++.++  .+..+++|++|++++|.+..+++.+|..+++|++|++++| .++.+|. .|.++.+|++|++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEEC
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEEC
Confidence            4666666666666654  2466666666666666666666555666666666666666 5665543 4566666666666


Q ss_pred             cCCcccccch-hhcCCCcccEEeccCCccCC-CCchhhhcCCCcccEEEeeccCC
Q 038877           85 SWTRIRGLPQ-ELKALEKLRYLSLEGTRHLS-IIPHQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus        85 ~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~  137 (298)
                      ++|.++.++. .++.+++|++|++++|.... ..|. .++.+++|++|++++|.+
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCch-hhccchhhhhhcccCccc
Confidence            6666665553 35666666666666663322 2233 256666666666665543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.81  E-value=8.9e-20  Score=147.63  Aligned_cols=213  Identities=17%  Similarity=0.202  Sum_probs=159.8

Q ss_pred             EecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeeeccCCc-ccccch-hhcCCCcccEEeccCCc
Q 038877           35 LLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLDLSWTR-IRGLPQ-ELKALEKLRYLSLEGTR  111 (298)
Q Consensus        35 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~-~~~l~~-~~~~l~~L~~L~l~~~~  111 (298)
                      .+.+..+..+|.  +  .++|++|++++| .++.+|. .++.+++|++|++++|. ++.++. .+..+++|++|++++|+
T Consensus        17 ~v~c~~l~~ip~--~--~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n   91 (239)
T 2xwt_C           17 RVTCKDIQRIPS--L--PPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR   91 (239)
T ss_dssp             EEEECSCSSCCC--C--CTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET
T ss_pred             eeEccCccccCC--C--CCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC
Confidence            333334666665  2  348999999999 8887765 78899999999999996 888775 68899999999999833


Q ss_pred             cCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCcc---EEEEEec-Cccchhhhccccc
Q 038877          112 HLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLN---VLSWSLH-SSLAVQKFLKYPK  187 (298)
Q Consensus       112 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~---~l~l~~~-~~~~~~~~~~~~~  187 (298)
                      .+..++...+.++++|+.|++++|.+..                ++. +..+++|+   .++++++ ....+..  ....
T Consensus        92 ~l~~i~~~~f~~l~~L~~L~l~~n~l~~----------------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~--~~~~  152 (239)
T 2xwt_C           92 NLTYIDPDALKELPLLKFLGIFNTGLKM----------------FPD-LTKVYSTDIFFILEITDNPYMTSIPV--NAFQ  152 (239)
T ss_dssp             TCCEECTTSEECCTTCCEEEEEEECCCS----------------CCC-CTTCCBCCSEEEEEEESCTTCCEECT--TTTT
T ss_pred             CeeEcCHHHhCCCCCCCEEeCCCCCCcc----------------ccc-cccccccccccEEECCCCcchhhcCc--cccc
Confidence            5667776568899999999999998843                222 66677776   9999988 5544332  1233


Q ss_pred             ccccee-EEEEeccCCCCcccccccccccccceecccCC-cceeeecchhhhhccccccC-CcccEEeccCCCCCCchhh
Q 038877          188 LLSITQ-SVGVYFCQSPPLNVLHLAYMENLQELVILNSD-LEEMKIDSAEEVKKLFRSGF-RSLNTVSVDYCQKAKDLTW  264 (298)
Q Consensus       188 ~~~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~  264 (298)
                      .++.|+ .|++++|.........+.. ++|+.|++++|. +..++...+        ..+ ++|+.|+++++ .++.++.
T Consensus       153 ~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~--------~~l~~~L~~L~l~~N-~l~~l~~  222 (239)
T 2xwt_C          153 GLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAF--------GGVYSGPSLLDVSQT-SVTALPS  222 (239)
T ss_dssp             TTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTT--------TTCSBCCSEEECTTC-CCCCCCC
T ss_pred             chhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHh--------hccccCCcEEECCCC-ccccCCh
Confidence            457889 9999998766444444555 899999999995 666665555        567 99999999998 7887764


Q ss_pred             hhhcCCCcEEEeecCccc
Q 038877          265 LVFAQNLKELRIDSCYDV  282 (298)
Q Consensus       265 l~~~~~L~~L~l~~c~~l  282 (298)
                      . .+++|+.|.+.+++.+
T Consensus       223 ~-~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          223 K-GLEHLKELIARNTWTL  239 (239)
T ss_dssp             T-TCTTCSEEECTTC---
T ss_pred             h-HhccCceeeccCccCC
Confidence            3 7899999999988653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.81  E-value=3.4e-21  Score=167.01  Aligned_cols=37  Identities=24%  Similarity=0.138  Sum_probs=18.5

Q ss_pred             cCccCCCeeeccCCcccc-----cchhhcCCCcccEEeccCC
Q 038877           74 SNLVSLHHLDLSWTRIRG-----LPQELKALEKLRYLSLEGT  110 (298)
Q Consensus        74 ~~l~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~  110 (298)
                      ..+++|++|++++|.+..     ++..+..+++|++|++++|
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  132 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN  132 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence            344555555555554442     3444455555555555555

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.81  E-value=7e-20  Score=151.14  Aligned_cols=187  Identities=19%  Similarity=0.252  Sum_probs=151.4

Q ss_pred             CcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCC
Q 038877            2 KVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLH   80 (298)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~   80 (298)
                      .++.+++|++|++++|.+.+++.+..+++|++|++++|.+..++...+..+++|++|++++| .+..++. .++.+++|+
T Consensus        58 ~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  136 (272)
T 3rfs_A           58 GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLT  136 (272)
T ss_dssp             TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCC
T ss_pred             ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCC
Confidence            57789999999999999999888899999999999999999888776899999999999999 7877754 578999999


Q ss_pred             eeeccCCcccccchh-hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHh
Q 038877           81 HLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKE  159 (298)
Q Consensus        81 ~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (298)
                      +|++++|.++.++.. +..+++|++|++++|. +..++...++++++|+.|++++|.+..               ..+..
T Consensus       137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------~~~~~  200 (272)
T 3rfs_A          137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKS---------------VPDGV  200 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC---------------CCTTT
T ss_pred             EEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCc---------------cCHHH
Confidence            999999999977754 6899999999999995 456666557999999999999999843               33455


Q ss_pred             hcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccc
Q 038877          160 LLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYME  214 (298)
Q Consensus       160 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  214 (298)
                      +..+++|+.+++++|....         .++.++.+.+..+...+..+.+++.++
T Consensus       201 ~~~l~~L~~L~l~~N~~~~---------~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          201 FDRLTSLQYIWLHDNPWDC---------TCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             TTTCTTCCEEECCSSCBCC---------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             HhCCcCCCEEEccCCCccc---------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence            7889999999999886532         234456666666654444444454443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=5.4e-19  Score=151.11  Aligned_cols=243  Identities=12%  Similarity=0.077  Sum_probs=184.9

Q ss_pred             cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCC-ccCCc-cccCccCCC
Q 038877            3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLAL-SKLPS-GISNLVSLH   80 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~p~-~~~~l~~L~   80 (298)
                      +++|.. +.++.+++.++.+|... .+++++|++++|.++.++..+|..+++|++|++++| .+ +.+|. .|.++++++
T Consensus         6 ~C~C~~-~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~   82 (350)
T 4ay9_X            6 ICHCSN-RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLH   82 (350)
T ss_dssp             SSEEET-TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCC
T ss_pred             ccEeeC-CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhh
Confidence            455543 67889999999988532 468999999999999999877999999999999999 65 45554 678888887


Q ss_pred             ee-eccCCcccccc-hhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeecc-CCccccccccccccccCchhHH
Q 038877           81 HL-DLSWTRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWC-GLWSRKEQEEGSVLYDDAEPLM  157 (298)
Q Consensus        81 ~L-~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~  157 (298)
                      ++ .+.+|.+..++ ..+..+++|++|++++| .+..++...+....++..+++.++ .+..               ...
T Consensus        83 ~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~---------------l~~  146 (350)
T 4ay9_X           83 EIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHT---------------IER  146 (350)
T ss_dssp             EEEEEEETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCE---------------ECT
T ss_pred             hhhcccCCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhcccccccc---------------ccc
Confidence            64 55668888775 56899999999999998 455566544566777888988764 3421               112


Q ss_pred             HhhcCC-CCccEEEEEecCccchhhhccccccccceeEEEEeccC-CCCcccccccccccccceecccCCcceeeecchh
Q 038877          158 KELLGL-KHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQ-SPPLNVLHLAYMENLQELVILNSDLEEMKIDSAE  235 (298)
Q Consensus       158 ~~l~~l-~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  235 (298)
                      ..+..+ ..++.++++++....+..   ......+++++.+.++. ........+..+++|+.|++++|.+..++     
T Consensus       147 ~~f~~~~~~l~~L~L~~N~i~~i~~---~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp-----  218 (350)
T 4ay9_X          147 NSFVGLSFESVILWLNKNGIQEIHN---SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP-----  218 (350)
T ss_dssp             TSSTTSBSSCEEEECCSSCCCEECT---TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC-----
T ss_pred             cchhhcchhhhhhccccccccCCCh---hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC-----
Confidence            234444 468889999887654432   22233578999998644 45555567899999999999999987743     


Q ss_pred             hhhccccccCCcccEEeccCCCCCCchhhhhhcCCCcEEEeec
Q 038877          236 EVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDS  278 (298)
Q Consensus       236 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~L~~L~l~~  278 (298)
                            ...+..|+.|.+.+|.+++.+|.+..+++|+.+++.+
T Consensus       219 ------~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          219 ------SYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY  255 (350)
T ss_dssp             ------SSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred             ------hhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence                  3567899999999999999999889999999999865

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.81  E-value=1.2e-19  Score=152.80  Aligned_cols=223  Identities=15%  Similarity=0.121  Sum_probs=127.8

Q ss_pred             ccEEEeecCCCcC--CCCC-C-------CCCcccEEEecCCccc-ccCchHH-hcCCCccEEEccCCcCCccCCccccCc
Q 038877            9 AKRISLMKTGIQS--PSEI-P-------TCPRLVTFLLDGNWIE-EITDGFF-RSMSSLRVLSLRRNLALSKLPSGISNL   76 (298)
Q Consensus         9 L~~L~l~~~~~~~--~~~~-~-------~~~~L~~L~l~~~~~~-~~~~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~~l   76 (298)
                      |+.|++++|.+..  +|.. .       .+++|++|++++|.+. .+|..++ ..+++|++|++++| .+...|..++.+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHH
Confidence            5555666665543  3322 1       4667777777777665 4444421 66677777777777 555555555555


Q ss_pred             -----cCCCeeeccCCcccccc-hhhcCCCcccEEeccCCccCCC--Cchh-hhcCCCcccEEEeeccCCcccccccccc
Q 038877           77 -----VSLHHLDLSWTRIRGLP-QELKALEKLRYLSLEGTRHLSI--IPHQ-LISGFSKLEVLRLLWCGLWSRKEQEEGS  147 (298)
Q Consensus        77 -----~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~--~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~  147 (298)
                           ++|++|++++|.+..++ ..++.+++|++|++++|...+.  ++.. .++++++|+.|++++|.+..        
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~--------  215 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET--------  215 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC--------
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc--------
Confidence                 66777777777666554 5566777777777777643332  1222 12666777777777776632        


Q ss_pred             ccccCchhHH-HhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCc
Q 038877          148 VLYDDAEPLM-KELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDL  226 (298)
Q Consensus       148 ~~~~~~~~~~-~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  226 (298)
                           ....+ ..+..+++|+.|++++|........ ......++|++|++++|..... +..+.  ++|+.|++++|.+
T Consensus       216 -----~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~Ls~N~l~~i-p~~~~--~~L~~L~Ls~N~l  286 (312)
T 1wwl_A          216 -----PSGVCSALAAARVQLQGLDLSHNSLRDAAGA-PSCDWPSQLNSLNLSFTGLKQV-PKGLP--AKLSVLDLSYNRL  286 (312)
T ss_dssp             -----HHHHHHHHHHTTCCCSEEECTTSCCCSSCCC-SCCCCCTTCCEEECTTSCCSSC-CSSCC--SEEEEEECCSSCC
T ss_pred             -----hHHHHHHHHhcCCCCCEEECCCCcCCcccch-hhhhhcCCCCEEECCCCccChh-hhhcc--CCceEEECCCCCC
Confidence                 22233 2334566777777776655432211 1112235677777777765422 22233  6777777777777


Q ss_pred             ceeeecchhhhhccccccCCcccEEeccCCCCCC
Q 038877          227 EEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAK  260 (298)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  260 (298)
                      ..++.  +        ..+++|+.|+++++ .++
T Consensus       287 ~~~p~--~--------~~l~~L~~L~L~~N-~l~  309 (312)
T 1wwl_A          287 DRNPS--P--------DELPQVGNLSLKGN-PFL  309 (312)
T ss_dssp             CSCCC--T--------TTSCEEEEEECTTC-TTT
T ss_pred             CCChh--H--------hhCCCCCEEeccCC-CCC
Confidence            66422  3        46777777777777 444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.81  E-value=6.4e-20  Score=155.90  Aligned_cols=223  Identities=20%  Similarity=0.126  Sum_probs=171.7

Q ss_pred             CcccEEEecCCcccccCchHHhcC--CCccEEEccCCcCCccCCccccCccCCCeeeccCCccc--ccchhhcCCCcccE
Q 038877           29 PRLVTFLLDGNWIEEITDGFFRSM--SSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIR--GLPQELKALEKLRY  104 (298)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~  104 (298)
                      ..++.++++++.+.   +..+..+  ++++.++++++ .+...+..+..+++|++|++++|.+.  .++..+..+++|++
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hhheeeccccccCC---HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            34788999998765   2336666  89999999999 77766555678999999999999887  37888999999999


Q ss_pred             EeccCCccCCCCchhhhcCCCcccEEEeecc-CCccccccccccccccCchhHHHhhcCCCCccEEEEEec-Cccchhhh
Q 038877          105 LSLEGTRHLSIIPHQLISGFSKLEVLRLLWC-GLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLH-SSLAVQKF  182 (298)
Q Consensus       105 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~-~~~~~~~~  182 (298)
                      |++++|...+..+.. ++.+++|++|++++| .+.              ...++..+..+++|+.|+++++ .... ..+
T Consensus       123 L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~--------------~~~l~~~~~~~~~L~~L~l~~~~~l~~-~~~  186 (336)
T 2ast_B          123 LSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFS--------------EFALQTLLSSCSRLDELNLSWCFDFTE-KHV  186 (336)
T ss_dssp             EECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCC--------------HHHHHHHHHHCTTCCEEECCCCTTCCH-HHH
T ss_pred             EeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCC--------------HHHHHHHHhcCCCCCEEcCCCCCCcCh-HHH
Confidence            999999654455554 888999999999999 452              2246677888999999999998 5432 223


Q ss_pred             cccccccc-ceeEEEEeccC--CCCc-ccccccccccccceecccCCc-ceeeecchhhhhccccccCCcccEEeccCCC
Q 038877          183 LKYPKLLS-ITQSVGVYFCQ--SPPL-NVLHLAYMENLQELVILNSDL-EEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQ  257 (298)
Q Consensus       183 ~~~~~~~~-~L~~L~l~~~~--~~~~-~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  257 (298)
                      ......++ +|++|++++|.  ..+. ....+..+++|+.|++++|.. ....+..+        ..+++|+.|++++|.
T Consensus       187 ~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l--------~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          187 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF--------FQLNYLQHLSLSRCY  258 (336)
T ss_dssp             HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG--------GGCTTCCEEECTTCT
T ss_pred             HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH--------hCCCCCCEeeCCCCC
Confidence            33344557 89999999984  3322 233466799999999999994 43444444        467999999999997


Q ss_pred             CCCchh--hhhhcCCCcEEEeecC
Q 038877          258 KAKDLT--WLVFAQNLKELRIDSC  279 (298)
Q Consensus       258 ~l~~l~--~l~~~~~L~~L~l~~c  279 (298)
                      .+.+..  .+..+++|++|++.+|
T Consensus       259 ~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          259 DIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCHHHHHHHhcCCCCCEEeccCc
Confidence            665532  4678999999999999

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.81  E-value=3.7e-20  Score=163.54  Aligned_cols=187  Identities=18%  Similarity=0.093  Sum_probs=92.1

Q ss_pred             cccCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCccc-ccCchHHhcCCC-------------ccEEEccCCcCCc
Q 038877            3 VEEWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIE-EITDGFFRSMSS-------------LRVLSLRRNLALS   67 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~-------------L~~L~l~~~~~~~   67 (298)
                      ..+.+.|+.|++++|.+..+| .+..+++|++|++++|.+. .+|.. ++.+.+             +++|++++| .++
T Consensus         7 ~~~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~   84 (454)
T 1jl5_A            7 NVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNL-GLS   84 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTS-CCS
T ss_pred             ccccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecCC-ccc
Confidence            345677888888888887677 4578888888888888665 55554 555554             377777777 666


Q ss_pred             cCCccccCccCCCeeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccccccc
Q 038877           68 KLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGS  147 (298)
Q Consensus        68 ~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  147 (298)
                      .+|..   .++|++|++++|.++.+|..   .++|++|++++| .+..++.  +  .++|++|++++|.+.+        
T Consensus        85 ~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n-~l~~l~~--~--~~~L~~L~L~~n~l~~--------  145 (454)
T 1jl5_A           85 SLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNN-NLKALSD--L--PPLLEYLGVSNNQLEK--------  145 (454)
T ss_dssp             CCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCCS--C--CTTCCEEECCSSCCSS--------
T ss_pred             cCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCC-ccCcccC--C--CCCCCEEECcCCCCCC--------
Confidence            66552   25677777777776666643   356666666666 2333332  1  1466666666666522        


Q ss_pred             ccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcc
Q 038877          148 VLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLE  227 (298)
Q Consensus       148 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  227 (298)
                              ++ .+..+++|+.++++++....++.      ...+|++|++++|.....  ..+..+++|+.|++++|.+.
T Consensus       146 --------lp-~~~~l~~L~~L~l~~N~l~~lp~------~~~~L~~L~L~~n~l~~l--~~~~~l~~L~~L~l~~N~l~  208 (454)
T 1jl5_A          146 --------LP-ELQNSSFLKIIDVDNNSLKKLPD------LPPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLK  208 (454)
T ss_dssp             --------CC-CCTTCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCS
T ss_pred             --------Cc-ccCCCCCCCEEECCCCcCcccCC------CcccccEEECcCCcCCcC--ccccCCCCCCEEECCCCcCC
Confidence                    22 35566666666666655433221      123556666666644332  23555556666666555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.79  E-value=3.9e-20  Score=163.88  Aligned_cols=267  Identities=21%  Similarity=0.130  Sum_probs=140.8

Q ss_pred             CccEEEeecCCCcC-----CC-CCCCCCcccEEEecCCcccccC-ch----HHhcCCCccEEEccCCcCCcc-----CCc
Q 038877            8 GAKRISLMKTGIQS-----PS-EIPTCPRLVTFLLDGNWIEEIT-DG----FFRSMSSLRVLSLRRNLALSK-----LPS   71 (298)
Q Consensus         8 ~L~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~~~~~~~~-~~----~~~~~~~L~~L~l~~~~~~~~-----~p~   71 (298)
                      +|++|++++|.+..     ++ .+..+++|++|++++|.++... ..    .....++|++|++++| .++.     ++.
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~  164 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLAS  164 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHH
Confidence            57777777776663     22 3356667777777777654211 11    1112345666666666 4442     233


Q ss_pred             cccCccCCCeeeccCCccccc-----chhh-cCCCcccEEeccCCccCCC----CchhhhcCCCcccEEEeeccCCcccc
Q 038877           72 GISNLVSLHHLDLSWTRIRGL-----PQEL-KALEKLRYLSLEGTRHLSI----IPHQLISGFSKLEVLRLLWCGLWSRK  141 (298)
Q Consensus        72 ~~~~l~~L~~L~l~~~~~~~l-----~~~~-~~l~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~  141 (298)
                      .+..+++|++|++++|.+...     ...+ ...++|++|++++|.....    ++.. +..+++|++|++++|.+....
T Consensus       165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~  243 (461)
T 1z7x_W          165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI-VASKASLRELALGSNKLGDVG  243 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH-HHHCTTCCEEECCSSBCHHHH
T ss_pred             HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH-HHhCCCccEEeccCCcCChHH
Confidence            444455566666665554421     1111 1233555555555522211    1221 344455555555554432100


Q ss_pred             -----c-------c-ccccccc-----cCchhHHHhhcCCCCccEEEEEecCccchh--hhccc-cccccceeEEEEecc
Q 038877          142 -----E-------Q-EEGSVLY-----DDAEPLMKELLGLKHLNVLSWSLHSSLAVQ--KFLKY-PKLLSITQSVGVYFC  200 (298)
Q Consensus       142 -----~-------~-~~~~~~~-----~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~--~~~~~-~~~~~~L~~L~l~~~  200 (298)
                           +       . ...++..     .+...++..+..+++|+.|+++++......  .+... ....+.|++|++++|
T Consensus       244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  323 (461)
T 1z7x_W          244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  323 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence                 0       0 0000000     011124556666778888888777653211  11111 112257888888888


Q ss_pred             CCCCcc----cccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCc-----hh-hhhhcCC
Q 038877          201 QSPPLN----VLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKD-----LT-WLVFAQN  270 (298)
Q Consensus       201 ~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----l~-~l~~~~~  270 (298)
                      ......    ...+..++.|+.|++++|.+.+.++..+..  .+. ...++|+.|++++| .+++     ++ .+..+++
T Consensus       324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~--~l~-~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~  399 (461)
T 1z7x_W          324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ--GLG-QPGSVLRVLWLADC-DVSDSSCSSLAATLLANHS  399 (461)
T ss_dssp             CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH--HHT-STTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCC
T ss_pred             CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH--HHc-CCCCceEEEECCCC-CCChhhHHHHHHHHHhCCC
Confidence            654432    223556789999999998776644433311  001 23679999999999 6774     33 3567899


Q ss_pred             CcEEEeecCc
Q 038877          271 LKELRIDSCY  280 (298)
Q Consensus       271 L~~L~l~~c~  280 (298)
                      |++|++++|+
T Consensus       400 L~~L~l~~N~  409 (461)
T 1z7x_W          400 LRELDLSNNC  409 (461)
T ss_dssp             CCEEECCSSS
T ss_pred             ccEEECCCCC
Confidence            9999999984

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=1.2e-18  Score=145.02  Aligned_cols=199  Identities=17%  Similarity=0.131  Sum_probs=162.2

Q ss_pred             CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccCCcccccchhhcCCCcccE
Q 038877           26 PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRY  104 (298)
Q Consensus        26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~  104 (298)
                      ..++++++++++++.+..+|.. +  .+++++|++++| .+..+ +..+..+++|++|++++|.++.++.. +.+++|++
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~   81 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPD-L--PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT   81 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSC-C--CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred             cccCCccEEECCCCCCCcCCCC-C--CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence            5678899999999999988876 3  378999999999 77765 56789999999999999999987764 78999999


Q ss_pred             EeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhcc
Q 038877          105 LSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLK  184 (298)
Q Consensus       105 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~  184 (298)
                      |++++| .+..+|.. +.++++|+.|++++|.+..               ..+..+..+++|+.|+++++....+..  .
T Consensus        82 L~Ls~N-~l~~l~~~-~~~l~~L~~L~l~~N~l~~---------------l~~~~~~~l~~L~~L~L~~N~l~~~~~--~  142 (290)
T 1p9a_G           82 LDLSHN-QLQSLPLL-GQTLPALTVLDVSFNRLTS---------------LPLGALRGLGELQELYLKGNELKTLPP--G  142 (290)
T ss_dssp             EECCSS-CCSSCCCC-TTTCTTCCEEECCSSCCCC---------------CCSSTTTTCTTCCEEECTTSCCCCCCT--T
T ss_pred             EECCCC-cCCcCchh-hccCCCCCEEECCCCcCcc---------------cCHHHHcCCCCCCEEECCCCCCCccCh--h
Confidence            999999 55678875 8899999999999999843               234567889999999999887654322  1


Q ss_pred             ccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCC
Q 038877          185 YPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQ  257 (298)
Q Consensus       185 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  257 (298)
                      .....++|+.|++++|.........+..+++|+.|++++|.+..++...+         ..++|+.|++.+++
T Consensus       143 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~---------~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF---------GSHLLPFAFLHGNP  206 (290)
T ss_dssp             TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---------TTCCCSEEECCSCC
T ss_pred             hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhc---------ccccCCeEEeCCCC
Confidence            22345789999999998776666668889999999999999887554433         46789999999874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.78  E-value=6.6e-19  Score=148.08  Aligned_cols=226  Identities=12%  Similarity=0.027  Sum_probs=168.1

Q ss_pred             CCcccEEEecCCcccc--cCch-HHhcCCCccEEEccCCcCCc-cCCccc--cCccCCCeeeccCCcccc-cc----hhh
Q 038877           28 CPRLVTFLLDGNWIEE--ITDG-FFRSMSSLRVLSLRRNLALS-KLPSGI--SNLVSLHHLDLSWTRIRG-LP----QEL   96 (298)
Q Consensus        28 ~~~L~~L~l~~~~~~~--~~~~-~~~~~~~L~~L~l~~~~~~~-~~p~~~--~~l~~L~~L~l~~~~~~~-l~----~~~   96 (298)
                      ...++.+.+.++.++.  +... .+..+++|++|++++| .+. ..|..+  +.+++|++|++++|.+.. .+    ..+
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            3457888888887651  1110 1334577999999999 665 556666  889999999999998884 22    334


Q ss_pred             cCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHH--HhhcCCCCccEEEEEec
Q 038877           97 KALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLM--KELLGLKHLNVLSWSLH  174 (298)
Q Consensus        97 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~l~~L~~l~l~~~  174 (298)
                      ..+++|++|++++|.. ..++...++++++|++|++++|.+.+             ....+  ..+..+++|+.|++++|
T Consensus       142 ~~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~~~~~~l~~L~~L~Ls~N  207 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNPGLG-------------ERGLMAALCPHKFPAIQNLALRNT  207 (310)
T ss_dssp             TBCSCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCTTCH-------------HHHHHTTSCTTSSCCCCSCBCCSS
T ss_pred             hhccCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCCCcc-------------chhhhHHHhhhcCCCCCEEECCCC
Confidence            5799999999999955 45554458999999999999998732             22232  22367899999999999


Q ss_pred             Cccchhhhccc-cccccceeEEEEeccCCCCccccccccc---ccccceecccCCcceeeecchhhhhccccccCCcccE
Q 038877          175 SSLAVQKFLKY-PKLLSITQSVGVYFCQSPPLNVLHLAYM---ENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNT  250 (298)
Q Consensus       175 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  250 (298)
                      ....+...... ....++|++|++++|......+..+..+   ++|+.|++++|.+..++.           .-+++|+.
T Consensus       208 ~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~-----------~~~~~L~~  276 (310)
T 4glp_A          208 GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK-----------GLPAKLRV  276 (310)
T ss_dssp             CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS-----------CCCSCCSC
T ss_pred             CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh-----------hhcCCCCE
Confidence            87654443222 2455789999999998766655444444   799999999999876421           23489999


Q ss_pred             EeccCCCCCCchhhhhhcCCCcEEEeecCc
Q 038877          251 VSVDYCQKAKDLTWLVFAQNLKELRIDSCY  280 (298)
Q Consensus       251 L~l~~c~~l~~l~~l~~~~~L~~L~l~~c~  280 (298)
                      |++++| .++.++.+..+++|++|++.+++
T Consensus       277 L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          277 LDLSSN-RLNRAPQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             EECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred             EECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence            999999 78887767889999999999874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.78  E-value=8.3e-20  Score=158.26  Aligned_cols=262  Identities=16%  Similarity=0.136  Sum_probs=181.5

Q ss_pred             cccCCCccEEEeecCCCcC-----CC-CCCCCCcccEEEecCCccc----ccCchH------HhcCCCccEEEccCCcCC
Q 038877            3 VEEWEGAKRISLMKTGIQS-----PS-EIPTCPRLVTFLLDGNWIE----EITDGF------FRSMSSLRVLSLRRNLAL   66 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~~~~~----~~~~~~------~~~~~~L~~L~l~~~~~~   66 (298)
                      +..+++|+.|++++|.+..     ++ .+..+++|++|++++|.+.    .+|..+      +..+++|++|++++| .+
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l  106 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AF  106 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cC
Confidence            4568899999999998876     22 3578999999999998554    334331      368899999999999 67


Q ss_pred             cc-----CCccccCccCCCeeeccCCcccc-----cchhhcCC---------CcccEEeccCCccC-CCCch--hhhcCC
Q 038877           67 SK-----LPSGISNLVSLHHLDLSWTRIRG-----LPQELKAL---------EKLRYLSLEGTRHL-SIIPH--QLISGF  124 (298)
Q Consensus        67 ~~-----~p~~~~~l~~L~~L~l~~~~~~~-----l~~~~~~l---------~~L~~L~l~~~~~~-~~~~~--~~~~~l  124 (298)
                      ..     +|..+..+++|++|++++|.+..     ++..+..+         ++|++|++++|... ..++.  ..+..+
T Consensus       107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  186 (386)
T 2ca6_A          107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  186 (386)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence            64     67788899999999999998862     33344445         89999999999544 23331  236789


Q ss_pred             CcccEEEeeccCCccccccccccccccCchhHHH-hhcCCCCccEEEEEecCccc--hhhhccccccccceeEEEEeccC
Q 038877          125 SKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMK-ELLGLKHLNVLSWSLHSSLA--VQKFLKYPKLLSITQSVGVYFCQ  201 (298)
Q Consensus       125 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~  201 (298)
                      ++|+.|++++|.+..           .+...+.. .+..+++|+.|++++|....  ...++......++|++|++++|.
T Consensus       187 ~~L~~L~L~~n~l~~-----------~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRP-----------EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             TTCCEEECCSSCCCH-----------HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             CCcCEEECcCCCCCH-----------hHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence            999999999998842           00112344 78889999999999987632  13333344556788999999987


Q ss_pred             CCCccc----ccc--cccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh----hh-hhcCC
Q 038877          202 SPPLNV----LHL--AYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT----WL-VFAQN  270 (298)
Q Consensus       202 ~~~~~~----~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~----~l-~~~~~  270 (298)
                      ......    ..+  ..+++|+.|++++|.+...++..+..  .+ ...+++|+.|++++| .++...    .+ ..++.
T Consensus       256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~--~l-~~~l~~L~~L~l~~N-~l~~~~~~~~~l~~~l~~  331 (386)
T 2ca6_A          256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT--VI-DEKMPDLLFLELNGN-RFSEEDDVVDEIREVFST  331 (386)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH--HH-HHHCTTCCEEECTTS-BSCTTSHHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH--HH-HhcCCCceEEEccCC-cCCcchhHHHHHHHHhhh
Confidence            654422    234  33889999999999887632222210  00 034799999999998 455432    11 33566


Q ss_pred             CcEEEeecCc
Q 038877          271 LKELRIDSCY  280 (298)
Q Consensus       271 L~~L~l~~c~  280 (298)
                      ++.+++..-.
T Consensus       332 ~~~~~l~~~d  341 (386)
T 2ca6_A          332 RGRGELDELD  341 (386)
T ss_dssp             HTCCEECCCC
T ss_pred             cCcchhhhcc
Confidence            6655555443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=2.1e-18  Score=143.63  Aligned_cols=170  Identities=23%  Similarity=0.298  Sum_probs=108.0

Q ss_pred             ccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeee
Q 038877            4 EEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLD   83 (298)
Q Consensus         4 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~   83 (298)
                      +++++|+.|++++|.+..++.+..+++|++|++++|.+..++.  +..+++|++|++++| .+..+|. +..+++|++|+
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~  118 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLS  118 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEE
T ss_pred             hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEE
Confidence            4456677777777777776666667777777777777766555  666777777777777 6665543 66677777777


Q ss_pred             ccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCC
Q 038877           84 LSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGL  163 (298)
Q Consensus        84 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  163 (298)
                      +++|.+..++ .+..+++|+.|++++|. +..++.  ++.+++|+.|++++|.+..                ... +..+
T Consensus       119 L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~~----------------~~~-l~~l  177 (291)
T 1h6t_A          119 LEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISD----------------IVP-LAGL  177 (291)
T ss_dssp             CTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCC----------------CGG-GTTC
T ss_pred             CCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCcccc----------------chh-hcCC
Confidence            7777766653 46667777777777763 344432  6677777777777776632                111 5666


Q ss_pred             CCccEEEEEecCccchhhhccccccccceeEEEEeccCC
Q 038877          164 KHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQS  202 (298)
Q Consensus       164 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  202 (298)
                      ++|+.|++++|....+..    ....++|+.|++++|..
T Consensus       178 ~~L~~L~L~~N~i~~l~~----l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          178 TKLQNLYLSKNHISDLRA----LAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             TTCCEEECCSSCCCBCGG----GTTCTTCSEEEEEEEEE
T ss_pred             CccCEEECCCCcCCCChh----hccCCCCCEEECcCCcc
Confidence            777777776665544332    12235556666666543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.77  E-value=3.5e-20  Score=164.21  Aligned_cols=224  Identities=17%  Similarity=0.180  Sum_probs=124.6

Q ss_pred             cccCCCccEEEeecCCCcC-----CCC-CCCCCcccEEEecCCccccc-CchHHhcCC----CccEEEccCCcCCc----
Q 038877            3 VEEWEGAKRISLMKTGIQS-----PSE-IPTCPRLVTFLLDGNWIEEI-TDGFFRSMS----SLRVLSLRRNLALS----   67 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~-----~~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~----~L~~L~l~~~~~~~----   67 (298)
                      +..+++|++|++++|.+..     ++. +..+++|++|++++|.+++. +..++..++    +|++|++++| .++    
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~  102 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGC  102 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGH
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHH
Confidence            3456777788887777663     232 35667777777777776532 223234454    5777777777 555    


Q ss_pred             -cCCccccCccCCCeeeccCCccccc-c----hh-hcCCCcccEEeccCCccCCC----CchhhhcCCCcccEEEeeccC
Q 038877           68 -KLPSGISNLVSLHHLDLSWTRIRGL-P----QE-LKALEKLRYLSLEGTRHLSI----IPHQLISGFSKLEVLRLLWCG  136 (298)
Q Consensus        68 -~~p~~~~~l~~L~~L~l~~~~~~~l-~----~~-~~~l~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~  136 (298)
                       .++..+..+++|++|++++|.+... +    .. ....++|++|++++|.....    ++. .+..+++|++|++++|.
T Consensus       103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~  181 (461)
T 1z7x_W          103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS-VLRAKPDFKELTVSNND  181 (461)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH-HHHHCTTCCEEECCSSB
T ss_pred             HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH-HHhhCCCCCEEECcCCC
Confidence             3355667777777777777766521 1    11 12244577777766633221    122 24455666666666665


Q ss_pred             Ccccccc-------------ccccccc-----cCchhHHHhhcCCCCccEEEEEecCccchh--hhcc-ccccccceeEE
Q 038877          137 LWSRKEQ-------------EEGSVLY-----DDAEPLMKELLGLKHLNVLSWSLHSSLAVQ--KFLK-YPKLLSITQSV  195 (298)
Q Consensus       137 ~~~~~~~-------------~~~~~~~-----~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~--~~~~-~~~~~~~L~~L  195 (298)
                      +....-.             ....+..     .....++..+..+++|+.|+++++......  .+.. .....+.|++|
T Consensus       182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L  261 (461)
T 1z7x_W          182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL  261 (461)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEE
Confidence            4221000             0001111     111134566677788888888877653321  1111 11234677888


Q ss_pred             EEeccCCCCcc----cccccccccccceecccCCcce
Q 038877          196 GVYFCQSPPLN----VLHLAYMENLQELVILNSDLEE  228 (298)
Q Consensus       196 ~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~  228 (298)
                      ++++|......    ...+..+++|+.|++++|.+..
T Consensus       262 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  298 (461)
T 1z7x_W          262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD  298 (461)
T ss_dssp             ECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred             ECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence            88887654432    2235557788888888877654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.77  E-value=7.9e-18  Score=153.39  Aligned_cols=218  Identities=19%  Similarity=0.098  Sum_probs=135.2

Q ss_pred             CCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccC
Q 038877            7 EGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSW   86 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~   86 (298)
                      ++|+.|++++|.++.+|.  .+++|++|++++|.++.+|.    .+++|++|++++| .+..+|.   .+.+|+.|++++
T Consensus        61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~  130 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFG  130 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCS
T ss_pred             CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCC
Confidence            567888888887777766  56778888888877776665    4677777777777 6666655   345666666666


Q ss_pred             CcccccchhhcCCCcccEEeccCCccCCCCchh--hh--------------cCCCcccEEEeeccCCcccccc----ccc
Q 038877           87 TRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQ--LI--------------SGFSKLEVLRLLWCGLWSRKEQ----EEG  146 (298)
Q Consensus        87 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~--------------~~l~~L~~L~l~~~~~~~~~~~----~~~  146 (298)
                      |.++.+|..   +++|++|++++|. +..+|..  .+              ..+++|+.|++++|.+..-...    ...
T Consensus       131 N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L  206 (622)
T 3g06_A          131 NQLTSLPVL---PPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKL  206 (622)
T ss_dssp             SCCSCCCCC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEE
T ss_pred             CCCCcCCCC---CCCCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCccchhhEE
Confidence            666655543   2556666666552 2222221  01              1226667777777666431000    000


Q ss_pred             cccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCc
Q 038877          147 SVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDL  226 (298)
Q Consensus       147 ~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  226 (298)
                      .+..+....++   ..+++|+.|++++|....++      ..+++|+.|++++|.......    .+++|+.|++++|.+
T Consensus       207 ~L~~N~l~~l~---~~~~~L~~L~Ls~N~L~~lp------~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L  273 (622)
T 3g06_A          207 WAYNNRLTSLP---ALPSGLKELIVSGNRLTSLP------VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQL  273 (622)
T ss_dssp             ECCSSCCSSCC---CCCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCC
T ss_pred             ECcCCcccccC---CCCCCCCEEEccCCccCcCC------CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCC
Confidence            11111111111   12367888888887665433      345789999999997654332    568999999999988


Q ss_pred             ceeeecchhhhhccccccCCcccEEeccCCCCCCc
Q 038877          227 EEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKD  261 (298)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  261 (298)
                      ..++. .+        ..+++|+.|++++| .++.
T Consensus       274 ~~lp~-~l--------~~l~~L~~L~L~~N-~l~~  298 (622)
T 3g06_A          274 TRLPE-SL--------IHLSSETTVNLEGN-PLSE  298 (622)
T ss_dssp             CSCCG-GG--------GGSCTTCEEECCSC-CCCH
T ss_pred             CcCCH-HH--------hhccccCEEEecCC-CCCC
Confidence            86542 33        57899999999999 4554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=4.1e-18  Score=133.71  Aligned_cols=151  Identities=15%  Similarity=0.217  Sum_probs=123.0

Q ss_pred             ccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCcc-CCccccCccCCCee
Q 038877            4 EEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSK-LPSGISNLVSLHHL   82 (298)
Q Consensus         4 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L   82 (298)
                      +++++|+.|++++|.+..+|.+..+++|++|++++|.+..++.  +..+++|++|++++| .+.. .|..++.+++|++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEE
Confidence            4577899999999999988877889999999999997766553  788999999999999 6664 57778889999999


Q ss_pred             eccCCccc-ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhc
Q 038877           83 DLSWTRIR-GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELL  161 (298)
Q Consensus        83 ~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  161 (298)
                      ++++|.+. ..+..+..+++|++|++++|..++.++.  +.++++|+.|++++|.+..                + ..+.
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~----------------~-~~l~  178 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD----------------Y-RGIE  178 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC----------------C-TTGG
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC----------------h-HHhc
Confidence            99999888 4667788999999999999864677764  8899999999999988842                2 2667


Q ss_pred             CCCCccEEEEEecCc
Q 038877          162 GLKHLNVLSWSLHSS  176 (298)
Q Consensus       162 ~l~~L~~l~l~~~~~  176 (298)
                      .+++|+.++++++..
T Consensus       179 ~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          179 DFPKLNQLYAFSQTI  193 (197)
T ss_dssp             GCSSCCEEEECBC--
T ss_pred             cCCCCCEEEeeCccc
Confidence            788888888887764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.75  E-value=1.6e-18  Score=158.31  Aligned_cols=212  Identities=15%  Similarity=0.115  Sum_probs=115.1

Q ss_pred             HhcCCCccEEEccCCcCCcc--CCccccCccCCCeeeccCCccc-ccchhhcCCCcccEEeccC----------CccCCC
Q 038877           49 FRSMSSLRVLSLRRNLALSK--LPSGISNLVSLHHLDLSWTRIR-GLPQELKALEKLRYLSLEG----------TRHLSI  115 (298)
Q Consensus        49 ~~~~~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~----------~~~~~~  115 (298)
                      +..+++|++|++++| .+..  ++..+..+++|++|++.++... .++.....+++|++|++++          |..++.
T Consensus       289 ~~~~~~L~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~  367 (592)
T 3ogk_B          289 FPFAAQIRKLDLLYA-LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ  367 (592)
T ss_dssp             GGGGGGCCEEEETTC-CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred             HhhcCCCcEEecCCC-cCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH
Confidence            444555555555555 3321  1122344555555555522111 3333344555666666653          322221


Q ss_pred             C-chhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcC-CCCccEEEEEecC----ccch---hhhcccc
Q 038877          116 I-PHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLG-LKHLNVLSWSLHS----SLAV---QKFLKYP  186 (298)
Q Consensus       116 ~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~l~l~~~~----~~~~---~~~~~~~  186 (298)
                      . ...+...+++|+.|+++.+.+               ....+..+.. +++|+.|++..+.    ....   ..+....
T Consensus       368 ~~~~~l~~~~~~L~~L~l~~~~l---------------~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~  432 (592)
T 3ogk_B          368 RGLIALAQGCQELEYMAVYVSDI---------------TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL  432 (592)
T ss_dssp             HHHHHHHHHCTTCSEEEEEESCC---------------CHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH
T ss_pred             HHHHHHHhhCccCeEEEeecCCc---------------cHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH
Confidence            1 111133466666666655555               3344444443 6777777776422    1111   1122223


Q ss_pred             ccccceeEEEEeccC--CCCccccccc-ccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCch-
Q 038877          187 KLLSITQSVGVYFCQ--SPPLNVLHLA-YMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDL-  262 (298)
Q Consensus       187 ~~~~~L~~L~l~~~~--~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-  262 (298)
                      ..+++|++|+++.|.  ..+.....+. .+++|+.|++++|.+...++..+.       .++++|+.|++++|. +++. 
T Consensus       433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-------~~~~~L~~L~l~~n~-l~~~~  504 (592)
T 3ogk_B          433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS-------RGCPNLQKLEMRGCC-FSERA  504 (592)
T ss_dssp             HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHH-------TCCTTCCEEEEESCC-CBHHH
T ss_pred             HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHH-------hcCcccCeeeccCCC-CcHHH
Confidence            446778888886543  2233333333 378889999988886553322221       578999999999996 7653 


Q ss_pred             -hh-hhhcCCCcEEEeecCcccccc
Q 038877          263 -TW-LVFAQNLKELRIDSCYDVEEI  285 (298)
Q Consensus       263 -~~-l~~~~~L~~L~l~~c~~l~~~  285 (298)
                       +. ...+++|++|++++|. +++.
T Consensus       505 ~~~~~~~l~~L~~L~ls~n~-it~~  528 (592)
T 3ogk_B          505 IAAAVTKLPSLRYLWVQGYR-ASMT  528 (592)
T ss_dssp             HHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred             HHHHHHhcCccCeeECcCCc-CCHH
Confidence             33 3579999999999997 5443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=4e-18  Score=141.90  Aligned_cols=188  Identities=22%  Similarity=0.216  Sum_probs=150.8

Q ss_pred             EEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccc
Q 038877           12 ISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRG   91 (298)
Q Consensus        12 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~   91 (298)
                      +.+..+.+.++.....+++|++|++++|.+..++.  +..+++|++|++++| .+..++. +..+++|++|++++|.++.
T Consensus        29 ~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~  104 (291)
T 1h6t_A           29 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKD  104 (291)
T ss_dssp             HHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred             HHhcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCC
Confidence            34445555555455678899999999999887765  788999999999999 8887776 8899999999999999988


Q ss_pred             cchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEE
Q 038877           92 LPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSW  171 (298)
Q Consensus        92 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l  171 (298)
                      ++. +..+++|++|++++|. +..++.  +..+++|+.|++++|.+..                + ..+..+++|+.|++
T Consensus       105 ~~~-l~~l~~L~~L~L~~n~-i~~~~~--l~~l~~L~~L~l~~n~l~~----------------~-~~l~~l~~L~~L~L  163 (291)
T 1h6t_A          105 LSS-LKDLKKLKSLSLEHNG-ISDING--LVHLPQLESLYLGNNKITD----------------I-TVLSRLTKLDTLSL  163 (291)
T ss_dssp             GGG-GTTCTTCCEEECTTSC-CCCCGG--GGGCTTCCEEECCSSCCCC----------------C-GGGGGCTTCSEEEC
T ss_pred             Chh-hccCCCCCEEECCCCc-CCCChh--hcCCCCCCEEEccCCcCCc----------------c-hhhccCCCCCEEEc
Confidence            765 8899999999999994 455554  8899999999999998843                1 56778899999999


Q ss_pred             EecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceee
Q 038877          172 SLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMK  230 (298)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  230 (298)
                      ++|.......    ...+++|+.|++++|...+.  ..+..+++|+.|++++|.+...+
T Consensus       164 ~~N~l~~~~~----l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          164 EDNQISDIVP----LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             CSSCCCCCGG----GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEECCC
T ss_pred             cCCccccchh----hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccCCc
Confidence            9887765443    34457889999999976553  35788999999999999876633

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.74  E-value=7.7e-19  Score=150.87  Aligned_cols=34  Identities=21%  Similarity=0.316  Sum_probs=15.5

Q ss_pred             ccEEEeecCCCcCCCC------CCCCC-cccEEEecCCccc
Q 038877            9 AKRISLMKTGIQSPSE------IPTCP-RLVTFLLDGNWIE   42 (298)
Q Consensus         9 L~~L~l~~~~~~~~~~------~~~~~-~L~~L~l~~~~~~   42 (298)
                      |++|++++|.+.+.+.      +..++ +|++|++++|.++
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~   64 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG   64 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG
T ss_pred             ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC
Confidence            5555555554444321      13343 4555555555444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=8.4e-18  Score=152.96  Aligned_cols=172  Identities=22%  Similarity=0.273  Sum_probs=124.3

Q ss_pred             cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877            3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL   82 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L   82 (298)
                      +.++++|+.|++++|.+..++.+..+++|+.|++++|.+..+++  +..+++|+.|++++| .+..+| .+..+++|++|
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL  114 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred             hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence            34567788888888888887777778888888888888776665  677888888888888 776665 57778888888


Q ss_pred             eccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcC
Q 038877           83 DLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLG  162 (298)
Q Consensus        83 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  162 (298)
                      ++++|.+..++ .+..+++|+.|++++|. +..++.  +..+++|+.|++++|.+..               ..+  +..
T Consensus       115 ~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~---------------~~~--l~~  173 (605)
T 1m9s_A          115 SLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISD---------------IVP--LAG  173 (605)
T ss_dssp             ECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCCC---------------CGG--GTT
T ss_pred             EecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCCC---------------chh--hcc
Confidence            88888777764 47778888888888874 344433  7788888888888887743               112  677


Q ss_pred             CCCccEEEEEecCccchhhhccccccccceeEEEEeccCCC
Q 038877          163 LKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSP  203 (298)
Q Consensus       163 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  203 (298)
                      +++|+.|++++|....+..    ...+++|+.|++.+|...
T Consensus       174 l~~L~~L~Ls~N~i~~l~~----l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          174 LTKLQNLYLSKNHISDLRA----LAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             CTTCCEEECCSSCCCBCGG----GTTCTTCSEEECCSEEEE
T ss_pred             CCCCCEEECcCCCCCCChH----HccCCCCCEEEccCCcCc
Confidence            7888888888776655432    233466777777777543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.74  E-value=2.7e-17  Score=133.96  Aligned_cols=176  Identities=24%  Similarity=0.264  Sum_probs=130.7

Q ss_pred             CCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeecc
Q 038877            7 EGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLS   85 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~   85 (298)
                      ...+.++++++.+..+|... .++++.|++++|.+..++...+..+++|++|++++| .+..+ +..+..+++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECC
Confidence            45788999999888887542 268999999999988777666889999999999999 77766 4457889999999999


Q ss_pred             CCcccccc-hhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCC
Q 038877           86 WTRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLK  164 (298)
Q Consensus        86 ~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  164 (298)
                      +|.++.++ ..+..+++|++|++++| .+..++...+.++++|+.|++++|.+..               ..+..+..++
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~~~~l~  155 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQS---------------IPAGAFDKLT  155 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC---------------CCTTTTTTCT
T ss_pred             CCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCc---------------cCHHHcCcCc
Confidence            99988776 45788999999999998 4556666657889999999999998843               2233566777


Q ss_pred             CccEEEEEecCccchhhhccccccccceeEEEEeccCC
Q 038877          165 HLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQS  202 (298)
Q Consensus       165 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  202 (298)
                      +|+.|++++|....+..  ......+.|+.|++.+|..
T Consensus       156 ~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          156 NLQTLSLSTNQLQSVPH--GAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             TCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSCCB
T ss_pred             CCCEEECCCCcCCccCH--HHHhCCCCCCEEEeeCCce
Confidence            88888887775543221  1122234556666665543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.74  E-value=2.5e-18  Score=144.54  Aligned_cols=224  Identities=14%  Similarity=0.092  Sum_probs=129.6

Q ss_pred             CccEEEeecCCCcC-----CCCCCCCCcccEEEecCCccc-ccCchHH--hcCCCccEEEccCCcCCcc-CC----cccc
Q 038877            8 GAKRISLMKTGIQS-----PSEIPTCPRLVTFLLDGNWIE-EITDGFF--RSMSSLRVLSLRRNLALSK-LP----SGIS   74 (298)
Q Consensus         8 ~L~~L~l~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~-~~~~~~~--~~~~~L~~L~l~~~~~~~~-~p----~~~~   74 (298)
                      .++.+.+.++.+..     +.....+++|++|++++|.+. ..+.. +  ..+++|++|++++| .+.. .+    ..+.
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPL-PLEATGLALSSLRLRNV-SWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCC-SSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTT
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhh-hhhccCCCCCEEEeecc-cccchhhhhHHHHhh
Confidence            45666666655543     111233455777777777665 33333 3  66777777777777 5542 22    2234


Q ss_pred             CccCCCeeeccCCcccccc-hhhcCCCcccEEeccCCccCCC--Cc-hhhhcCCCcccEEEeeccCCccccccccccccc
Q 038877           75 NLVSLHHLDLSWTRIRGLP-QELKALEKLRYLSLEGTRHLSI--IP-HQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLY  150 (298)
Q Consensus        75 ~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~--~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  150 (298)
                      .+++|++|++++|.+..++ ..++.+++|++|++++|...+.  ++ ...++.+++|++|++++|.+..           
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------  211 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-----------  211 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-----------
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-----------
Confidence            5677777777777776544 4566777777777777743321  11 1113567777777777777632           


Q ss_pred             cCchhHHHh-hcCCCCccEEEEEecCccch-hhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcce
Q 038877          151 DDAEPLMKE-LLGLKHLNVLSWSLHSSLAV-QKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE  228 (298)
Q Consensus       151 ~~~~~~~~~-l~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  228 (298)
                        ....+.. +..+++|+.|++++|..... +.........++|++|++++|..... +..+.  ++|+.|++++|.+..
T Consensus       212 --l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          212 --PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLP--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             --HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCC--SCCSCEECCSCCCCS
T ss_pred             --hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhc--CCCCEEECCCCcCCC
Confidence              2222222 35667777777777665432 11111111125777788877765532 22232  688888888888776


Q ss_pred             eeecchhhhhccccccCCcccEEeccCCCCCC
Q 038877          229 MKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAK  260 (298)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  260 (298)
                      ++.  .        ..+++|+.|+++++ .++
T Consensus       287 ~~~--~--------~~l~~L~~L~L~~N-~l~  307 (310)
T 4glp_A          287 APQ--P--------DELPEVDNLTLDGN-PFL  307 (310)
T ss_dssp             CCC--T--------TSCCCCSCEECSST-TTS
T ss_pred             Cch--h--------hhCCCccEEECcCC-CCC
Confidence            422  2        46788888888887 444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.74  E-value=1.9e-17  Score=141.50  Aligned_cols=234  Identities=15%  Similarity=0.140  Sum_probs=171.3

Q ss_pred             ccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeeeccCCccc-ccch-hhcCCCcccEEec
Q 038877           31 LVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLDLSWTRIR-GLPQ-ELKALEKLRYLSL  107 (298)
Q Consensus        31 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~-~l~~-~~~~l~~L~~L~l  107 (298)
                      -++++.+++.++.+|.. +  .+++++|++++| .++.+|. .|.++++|++|++++|.+. .++. .+..++++..+..
T Consensus        11 ~~~v~C~~~~Lt~iP~~-l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X           11 NRVFLCQESKVTEIPSD-L--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             TTEEEEESTTCCSCCTT-C--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             CCEEEecCCCCCccCcC-c--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            36788888889899876 3  468999999999 8998876 6899999999999999875 5654 5788898877555


Q ss_pred             cCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCc-cchhhhcccc
Q 038877          108 EGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSS-LAVQKFLKYP  186 (298)
Q Consensus       108 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~-~~~~~~~~~~  186 (298)
                      .+++.+..++.+.+.++++|+.|++++|.+..               .....+.....+..+++..+.. ..+.. ....
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~---------------~~~~~~~~~~~l~~l~l~~~~~i~~l~~-~~f~  150 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKH---------------LPDVHKIHSLQKVLLDIQDNINIHTIER-NSFV  150 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSS---------------CCCCTTCCBSSCEEEEEESCTTCCEECT-TSST
T ss_pred             ccCCcccccCchhhhhcccccccccccccccc---------------CCchhhcccchhhhhhhccccccccccc-cchh
Confidence            44335677766668999999999999998843               1122333445677777765432 22211 1122


Q ss_pred             ccccceeEEEEeccCCCCcccccccccccccceecccCCcce-eeecchhhhhccccccCCcccEEeccCCCCCCchhhh
Q 038877          187 KLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE-MKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWL  265 (298)
Q Consensus       187 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l  265 (298)
                      .....++.|++++|........ ....++|+.|.+.+++..+ ++.+.+        ..+++|+.|+++++ .++.++. 
T Consensus       151 ~~~~~l~~L~L~~N~i~~i~~~-~f~~~~L~~l~l~~~n~l~~i~~~~f--------~~l~~L~~LdLs~N-~l~~lp~-  219 (350)
T 4ay9_X          151 GLSFESVILWLNKNGIQEIHNS-AFNGTQLDELNLSDNNNLEELPNDVF--------HGASGPVILDISRT-RIHSLPS-  219 (350)
T ss_dssp             TSBSSCEEEECCSSCCCEECTT-SSTTEEEEEEECTTCTTCCCCCTTTT--------TTEECCSEEECTTS-CCCCCCS-
T ss_pred             hcchhhhhhccccccccCCChh-hccccchhHHhhccCCcccCCCHHHh--------ccCcccchhhcCCC-CcCccCh-
Confidence            3335678999999876544333 3345789999998765555 766666        67899999999999 8998863 


Q ss_pred             hhcCCCcEEEeecCcccccccccCcccccc
Q 038877          266 VFAQNLKELRIDSCYDVEEIISVDKLSDIS  295 (298)
Q Consensus       266 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~  295 (298)
                      ..+.+|++|.+.++..+++++..+....+.
T Consensus       220 ~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~  249 (350)
T 4ay9_X          220 YGLENLKKLRARSTYNLKKLPTLEKLVALM  249 (350)
T ss_dssp             SSCTTCCEEECTTCTTCCCCCCTTTCCSCC
T ss_pred             hhhccchHhhhccCCCcCcCCCchhCcChh
Confidence            458899999999999999999776655443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.73  E-value=2.9e-17  Score=150.88  Aligned_cols=245  Identities=17%  Similarity=0.120  Sum_probs=129.1

Q ss_pred             cCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCc---cCCccccCccCCCe
Q 038877            5 EWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALS---KLPSGISNLVSLHH   81 (298)
Q Consensus         5 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~p~~~~~l~~L~~   81 (298)
                      .+..++.|++.++.+..++. ..+..|+.+.+..+.....+.  ...+++|++++++.| .+.   ..+..+..+.+|++
T Consensus       326 ~~~~L~~L~l~~~~~~~~~~-~~l~~L~~l~l~~n~~~~~~~--~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~  401 (635)
T 4g8a_A          326 YNFGWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTISLKY  401 (635)
T ss_dssp             SCCCCSEEEEESCEESSCCC-CBCTTCCEEEEESCCSCCBCC--CCBCTTCCEEECCSS-CCBEEEECCHHHHSCSCCCE
T ss_pred             cchhhhhhhcccccccCcCc-ccchhhhhcccccccCCCCcc--cccccccccchhhcc-ccccccccccchhhhhhhhh
Confidence            34455555555554444322 123444455555444332222  234566666666666 443   22334445566666


Q ss_pred             eeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhc
Q 038877           82 LDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELL  161 (298)
Q Consensus        82 L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  161 (298)
                      +++..+....++..+..+++|+.+++.++......+...+..+++++.++++.|.+.               ...+..+.
T Consensus       402 L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~---------------~~~~~~~~  466 (635)
T 4g8a_A          402 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR---------------VAFNGIFN  466 (635)
T ss_dssp             EECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCE---------------ECCTTTTT
T ss_pred             hhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccc---------------cccccccc
Confidence            666666555555555566666666666654444444334566666666666666652               23334455


Q ss_pred             CCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccc
Q 038877          162 GLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLF  241 (298)
Q Consensus       162 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  241 (298)
                      .++.++.++++++.... ...+......++|+.|++++|......+..+.++++|++|++++|++..++...+       
T Consensus       467 ~~~~L~~L~Ls~N~~~~-~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~-------  538 (635)
T 4g8a_A          467 GLSSLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-------  538 (635)
T ss_dssp             TCTTCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGG-------
T ss_pred             cchhhhhhhhhhccccc-ccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHH-------
Confidence            55666666665543211 0111223334556666666665555555556666666666666666655444444       


Q ss_pred             cccCCcccEEeccCCCCCCchh--hhhhc-CCCcEEEeec
Q 038877          242 RSGFRSLNTVSVDYCQKAKDLT--WLVFA-QNLKELRIDS  278 (298)
Q Consensus       242 ~~~~~~L~~L~l~~c~~l~~l~--~l~~~-~~L~~L~l~~  278 (298)
                       ..+++|+.|++++| .++.++  .+..+ ++|++|++.+
T Consensus       539 -~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          539 -KCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ  576 (635)
T ss_dssp             -TTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTT
T ss_pred             -hCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeC
Confidence             45666666666666 455442  23334 4566666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=2.1e-18  Score=156.93  Aligned_cols=192  Identities=22%  Similarity=0.223  Sum_probs=155.3

Q ss_pred             ccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCc
Q 038877            9 AKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTR   88 (298)
Q Consensus         9 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~   88 (298)
                      +..+.+..+.+.++.....+++|+.|++++|.+..++.  +..+++|+.|++++| .+..+++ +..+++|+.|+|++|.
T Consensus        23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~   98 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENK   98 (605)
T ss_dssp             HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC
T ss_pred             HHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCC
Confidence            44445555666665556778999999999999988764  889999999999999 8887776 8899999999999999


Q ss_pred             ccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccE
Q 038877           89 IRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNV  168 (298)
Q Consensus        89 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  168 (298)
                      +..++ .+..+++|+.|++++|. +..++.  +..+++|+.|++++|.+..                + ..+..+++|+.
T Consensus        99 l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~----------------l-~~l~~l~~L~~  157 (605)
T 1m9s_A           99 IKDLS-SLKDLKKLKSLSLEHNG-ISDING--LVHLPQLESLYLGNNKITD----------------I-TVLSRLTKLDT  157 (605)
T ss_dssp             CCCCT-TSTTCTTCCEEECTTSC-CCCCGG--GGGCTTCSEEECCSSCCCC----------------C-GGGGSCTTCSE
T ss_pred             CCCCh-hhccCCCCCEEEecCCC-CCCCcc--ccCCCccCEEECCCCccCC----------------c-hhhcccCCCCE
Confidence            98876 68899999999999994 455554  8999999999999999843                2 56788999999


Q ss_pred             EEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeee
Q 038877          169 LSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKI  231 (298)
Q Consensus       169 l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  231 (298)
                      |+++.|.......    ...+++|+.|++++|.....  ..+..+++|+.|++++|.+...++
T Consensus       158 L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          158 LSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             EECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred             EECcCCcCCCchh----hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence            9999887655433    34457889999999976553  468889999999999998766433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.73  E-value=4.3e-17  Score=132.79  Aligned_cols=154  Identities=25%  Similarity=0.334  Sum_probs=132.4

Q ss_pred             CCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeee
Q 038877            7 EGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLD   83 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~   83 (298)
                      ++++.|++++|.+..++  .+..+++|++|++++|.+..+++..+..+++|++|++++| .+..+| ..+..+++|++|+
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLY  113 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEE
Confidence            57999999999999865  3588999999999999999877766899999999999999 787775 4678999999999


Q ss_pred             ccCCcccccchh-hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcC
Q 038877           84 LSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLG  162 (298)
Q Consensus        84 l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  162 (298)
                      +++|.++.++.. +..+++|++|++++| .+..++...++++++|+.|++++|.+..               ..+..+..
T Consensus       114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------~~~~~~~~  177 (251)
T 3m19_A          114 LGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQS---------------VPHGAFDR  177 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC---------------CCTTTTTT
T ss_pred             cCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCc---------------cCHHHHhC
Confidence            999999988754 688999999999999 4566676558999999999999999843               33456788


Q ss_pred             CCCccEEEEEecCcc
Q 038877          163 LKHLNVLSWSLHSSL  177 (298)
Q Consensus       163 l~~L~~l~l~~~~~~  177 (298)
                      +++|+.+++++|...
T Consensus       178 l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          178 LGKLQTITLFGNQFD  192 (251)
T ss_dssp             CTTCCEEECCSCCBC
T ss_pred             CCCCCEEEeeCCcee
Confidence            999999999998764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.73  E-value=4.7e-18  Score=155.16  Aligned_cols=252  Identities=13%  Similarity=0.067  Sum_probs=131.4

Q ss_pred             cCCCccEEEeecCCCcCCC-----CC-CCCCcccEEEecCCcccccC----chHHhcCCCccEEEccCCcCCccCCcccc
Q 038877            5 EWEGAKRISLMKTGIQSPS-----EI-PTCPRLVTFLLDGNWIEEIT----DGFFRSMSSLRVLSLRRNLALSKLPSGIS   74 (298)
Q Consensus         5 ~~~~L~~L~l~~~~~~~~~-----~~-~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~p~~~~   74 (298)
                      +|++|++|++++|.+.+..     .+ ..+++|++|+++++.++.+.    ...+..+++|++|++++| .+..+|..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHh
Confidence            5788888888888765422     11 45677777777777664111    223566777777777777 5555555555


Q ss_pred             CccCCCeeecc---------------------------CCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcc
Q 038877           75 NLVSLHHLDLS---------------------------WTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKL  127 (298)
Q Consensus        75 ~l~~L~~L~l~---------------------------~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L  127 (298)
                      .+++|++|+++                           ++....+|..+..+++|++|++++|..........+.++++|
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L  320 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL  320 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence            55555555554                           322234455556666777777777642211111224666666


Q ss_pred             cEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEe----------cCccchhhhcccccc---------
Q 038877          128 EVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSL----------HSSLAVQKFLKYPKL---------  188 (298)
Q Consensus       128 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~----------~~~~~~~~~~~~~~~---------  188 (298)
                      +.|++.. .+.              ...+......+++|+.|+++.          +.......+......         
T Consensus       321 ~~L~L~~-~~~--------------~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l  385 (592)
T 3ogk_B          321 EVLETRN-VIG--------------DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV  385 (592)
T ss_dssp             CEEEEEG-GGH--------------HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE
T ss_pred             CEEeccC-ccC--------------HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe
Confidence            6666662 221              112222223444455555542          211111111111222         


Q ss_pred             ----------------ccceeEEEEeccC----CCCc-----ccccccccccccceecccCCc--ceeeecchhhhhccc
Q 038877          189 ----------------LSITQSVGVYFCQ----SPPL-----NVLHLAYMENLQELVILNSDL--EEMKIDSAEEVKKLF  241 (298)
Q Consensus       189 ----------------~~~L~~L~l~~~~----~~~~-----~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~~~  241 (298)
                                      +++|+.|++.++.    ..+.     ....+.++++|+.|+++.|..  ....+..+.      
T Consensus       386 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~------  459 (592)
T 3ogk_B          386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG------  459 (592)
T ss_dssp             EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH------
T ss_pred             ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH------
Confidence                            3445555554221    1111     000133355566665544331  111222221      


Q ss_pred             cccCCcccEEeccCCCCCCch--h-hhhhcCCCcEEEeecCc
Q 038877          242 RSGFRSLNTVSVDYCQKAKDL--T-WLVFAQNLKELRIDSCY  280 (298)
Q Consensus       242 ~~~~~~L~~L~l~~c~~l~~l--~-~l~~~~~L~~L~l~~c~  280 (298)
                       ..+++|+.|++++| .+++.  + ++..+++|++|+|.+|+
T Consensus       460 -~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          460 -QYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             -HSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             -HhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC
Confidence             35788999999988 57653  2 34678999999999997

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=6.4e-17  Score=132.60  Aligned_cols=148  Identities=26%  Similarity=0.295  Sum_probs=87.5

Q ss_pred             cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877            3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL   82 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L   82 (298)
                      +.++++|++|++++|.+..++.+..+++|++|++++|.+..+++  +..+++|++|++++| .+..+|....  .+|++|
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~L  111 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSRL  111 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCEE
T ss_pred             hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCcccc--CcccEE
Confidence            34556666666666666666655666666666666666665554  556666666666666 5555544222  666666


Q ss_pred             eccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcC
Q 038877           83 DLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLG  162 (298)
Q Consensus        83 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  162 (298)
                      ++++|.++.++ .+..+++|++|++++|. ++.++.  ++.+++|+.|++++|.+..               .  ..+..
T Consensus       112 ~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~---------------~--~~l~~  170 (263)
T 1xeu_A          112 FLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITN---------------T--GGLTR  170 (263)
T ss_dssp             ECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCB---------------C--TTSTT
T ss_pred             EccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcc---------------h--HHhcc
Confidence            66666666554 35566666666666663 344442  5666666666666666632               1  44555


Q ss_pred             CCCccEEEEEecCc
Q 038877          163 LKHLNVLSWSLHSS  176 (298)
Q Consensus       163 l~~L~~l~l~~~~~  176 (298)
                      +++|+.++++++..
T Consensus       171 l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          171 LKKVNWIDLTGQKC  184 (263)
T ss_dssp             CCCCCEEEEEEEEE
T ss_pred             CCCCCEEeCCCCcc
Confidence            66666666665544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.69  E-value=1.8e-16  Score=126.38  Aligned_cols=156  Identities=20%  Similarity=0.265  Sum_probs=126.2

Q ss_pred             cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCe
Q 038877            3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHH   81 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~   81 (298)
                      -+.|. -+.++++++.++.+|... .+++++|++++|.+..++...+..+++|++|++++| .+..+ |..+..+++|++
T Consensus         8 ~C~C~-~~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~   84 (220)
T 2v9t_B            8 ACTCS-NNIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNS   84 (220)
T ss_dssp             TSEEE-TTEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCE
T ss_pred             CCEEC-CCEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCE
Confidence            34443 367888899888887532 278999999999999888766889999999999999 77766 778999999999


Q ss_pred             eeccCCcccccchh-hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh
Q 038877           82 LDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL  160 (298)
Q Consensus        82 L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  160 (298)
                      |++++|.++.+|.. +..+++|++|++++|. +..++...+.++++|+.|++++|.+..               .....+
T Consensus        85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------~~~~~~  148 (220)
T 2v9t_B           85 LVLYGNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQT---------------IAKGTF  148 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC---------------CCTTTT
T ss_pred             EECCCCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCE---------------ECHHHH
Confidence            99999999988865 6889999999999995 455544458999999999999999843               233457


Q ss_pred             cCCCCccEEEEEecCcc
Q 038877          161 LGLKHLNVLSWSLHSSL  177 (298)
Q Consensus       161 ~~l~~L~~l~l~~~~~~  177 (298)
                      ..+++|+.+++++|...
T Consensus       149 ~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          149 SPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTCTTCCEEECCSSCEE
T ss_pred             hCCCCCCEEEeCCCCcC
Confidence            77888999999887653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=1.5e-17  Score=136.44  Aligned_cols=167  Identities=19%  Similarity=0.171  Sum_probs=117.5

Q ss_pred             CCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeecc
Q 038877            6 WEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLS   85 (298)
Q Consensus         6 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~   85 (298)
                      +.++..+++.++.+.+++.+..+++|++|++++|.+..++.  +..+++|++|++++| .+..++. +..+++|++|+++
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~   93 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECC
Confidence            44556666777777776666778888888888888777763  777888888888888 7777766 7788888888888


Q ss_pred             CCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCC
Q 038877           86 WTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKH  165 (298)
Q Consensus        86 ~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  165 (298)
                      +|.++.++....  ++|+.|++++| .+..++.  ++++++|+.|++++|.+..                + ..+..+++
T Consensus        94 ~N~l~~l~~~~~--~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~----------------~-~~l~~l~~  151 (263)
T 1xeu_A           94 RNRLKNLNGIPS--ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLKS----------------I-VMLGFLSK  151 (263)
T ss_dssp             SSCCSCCTTCCC--SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTSCCCB----------------C-GGGGGCTT
T ss_pred             CCccCCcCcccc--CcccEEEccCC-ccCCChh--hcCcccccEEECCCCcCCC----------------C-hHHccCCC
Confidence            888877765433  78888888887 3445543  7788888888888887743                1 24666777


Q ss_pred             ccEEEEEecCccchhhhccccccccceeEEEEeccCC
Q 038877          166 LNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQS  202 (298)
Q Consensus       166 L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  202 (298)
                      |+.|++++|......    .....+.|+.|++++|..
T Consensus       152 L~~L~L~~N~i~~~~----~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          152 LEVLDLHGNEITNTG----GLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             CCEEECTTSCCCBCT----TSTTCCCCCEEEEEEEEE
T ss_pred             CCEEECCCCcCcchH----HhccCCCCCEEeCCCCcc
Confidence            777777777655441    223345566666666653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.69  E-value=1.4e-16  Score=126.02  Aligned_cols=149  Identities=24%  Similarity=0.306  Sum_probs=115.4

Q ss_pred             ccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeeeccCC
Q 038877            9 AKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLDLSWT   87 (298)
Q Consensus         9 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~   87 (298)
                      -+.++..++.+..+|.. -.++|++|++++|.+..++...+..+++|++|++++| .+..+|. .+..+++|++|++++|
T Consensus         9 ~~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TTEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC
Confidence            35778888888877643 2568999999999988877766888999999999999 7777755 4688999999999999


Q ss_pred             cccccchh-hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCc
Q 038877           88 RIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHL  166 (298)
Q Consensus        88 ~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L  166 (298)
                      .++.++.. +..+++|++|++++|. +..++...+.++++|+.|++++|.+..               .....+..+++|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~---------------~~~~~~~~l~~L  150 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKS---------------VPDGVFDRLTSL  150 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC---------------CCTTTTTTCTTC
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccce---------------eCHHHhccCCCc
Confidence            88877654 6889999999999984 456665557889999999999988732               222335667777


Q ss_pred             cEEEEEecC
Q 038877          167 NVLSWSLHS  175 (298)
Q Consensus       167 ~~l~l~~~~  175 (298)
                      +.+++++|.
T Consensus       151 ~~L~l~~N~  159 (208)
T 2o6s_A          151 QYIWLHDNP  159 (208)
T ss_dssp             CEEECCSCC
T ss_pred             cEEEecCCC
Confidence            777776653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.68  E-value=3.9e-17  Score=140.20  Aligned_cols=253  Identities=15%  Similarity=0.111  Sum_probs=177.3

Q ss_pred             EEEeecCCCcC-CCCC-CCCCcccEEEecCCcccccCc----hHHhcCC-CccEEEccCCcCCccC-CccccCc-----c
Q 038877           11 RISLMKTGIQS-PSEI-PTCPRLVTFLLDGNWIEEITD----GFFRSMS-SLRVLSLRRNLALSKL-PSGISNL-----V   77 (298)
Q Consensus        11 ~L~l~~~~~~~-~~~~-~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~-p~~~~~l-----~   77 (298)
                      .+.++++.+++ +|.+ ...++|++|++++|.++..+.    ..+..++ +|++|++++| .++.. +..+..+     +
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCC
Confidence            46778888887 4555 555669999999999987665    5588888 8999999999 77754 4455554     8


Q ss_pred             CCCeeeccCCcccccc-h----hhcCC-CcccEEeccCCccCCCCchh---hhcC-CCcccEEEeeccCCcccccccccc
Q 038877           78 SLHHLDLSWTRIRGLP-Q----ELKAL-EKLRYLSLEGTRHLSIIPHQ---LISG-FSKLEVLRLLWCGLWSRKEQEEGS  147 (298)
Q Consensus        78 ~L~~L~l~~~~~~~l~-~----~~~~l-~~L~~L~l~~~~~~~~~~~~---~~~~-l~~L~~L~l~~~~~~~~~~~~~~~  147 (298)
                      +|++|++++|.++..+ .    .+... ++|++|++++|......+..   .+.. .++|++|++++|.+..        
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~--------  152 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI--------  152 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG--------
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH--------
Confidence            9999999999988443 2    35555 89999999999653333322   1334 3699999999998843        


Q ss_pred             ccccCchhHHHhhcCCC-CccEEEEEecCccchh--hhccccccc-cceeEEEEeccCCCCcccc----cccc-cccccc
Q 038877          148 VLYDDAEPLMKELLGLK-HLNVLSWSLHSSLAVQ--KFLKYPKLL-SITQSVGVYFCQSPPLNVL----HLAY-MENLQE  218 (298)
Q Consensus       148 ~~~~~~~~~~~~l~~l~-~L~~l~l~~~~~~~~~--~~~~~~~~~-~~L~~L~l~~~~~~~~~~~----~l~~-l~~L~~  218 (298)
                         .+...+...+..++ +|+.|++++|......  .+....... +.|+.|++++|...+....    .+.. .++|+.
T Consensus       153 ---~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~  229 (362)
T 3goz_A          153 ---KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS  229 (362)
T ss_dssp             ---SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred             ---HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence               22345667777776 9999999998764322  222222223 5899999999976443222    2444 459999


Q ss_pred             eecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCch-----h----hhhhcCCCcEEEeecCc
Q 038877          219 LVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDL-----T----WLVFAQNLKELRIDSCY  280 (298)
Q Consensus       219 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-----~----~l~~~~~L~~L~l~~c~  280 (298)
                      |++++|.+...++..+..    ....+++|+.|++++| .+..+     .    .+..+++|++|++++++
T Consensus       230 L~Ls~N~l~~~~~~~l~~----~~~~l~~L~~L~L~~n-~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          230 LNLCLNCLHGPSLENLKL----LKDSLKHLQTVYLDYD-IVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             EECCSSCCCCCCHHHHHH----TTTTTTTCSEEEEEHH-HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             EECcCCCCCcHHHHHHHH----HHhcCCCccEEEeccC-CccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            999999987755433311    1156789999999999 42222     1    12457788899999875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.68  E-value=2e-17  Score=151.02  Aligned_cols=35  Identities=14%  Similarity=0.215  Sum_probs=21.6

Q ss_pred             cCCcccEEeccCCCCCCch--hhhh-hcCCCcEEEeecCc
Q 038877          244 GFRSLNTVSVDYCQKAKDL--TWLV-FAQNLKELRIDSCY  280 (298)
Q Consensus       244 ~~~~L~~L~l~~c~~l~~l--~~l~-~~~~L~~L~l~~c~  280 (298)
                      .+++|+.|++++  .+++.  ..+. .+++|++|++.+|.
T Consensus       430 ~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~  467 (594)
T 2p1m_B          430 HCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG  467 (594)
T ss_dssp             HCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred             hCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC
Confidence            456777777755  44443  2233 37778888887775

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.67  E-value=6e-16  Score=139.46  Aligned_cols=179  Identities=19%  Similarity=0.221  Sum_probs=140.2

Q ss_pred             CCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccC
Q 038877            7 EGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSW   86 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~   86 (298)
                      .+|+.|++++|.++++|... +++|++|++++|.++.+|    ..+++|++|++++| .++.+|. +..  +|++|++++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred             CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence            48999999999999887532 488999999999998887    34789999999999 8888887 654  999999999


Q ss_pred             CcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCc
Q 038877           87 TRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHL  166 (298)
Q Consensus        87 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L  166 (298)
                      |.++.+|.   .+++|+.|++++|. +..+|.    .+++|+.|++++|.+..                ++. +.  ++|
T Consensus       130 N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~L~~----------------lp~-l~--~~L  182 (571)
T 3cvr_A          130 NQLTMLPE---LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNNQLTF----------------LPE-LP--ESL  182 (571)
T ss_dssp             SCCSCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSC----------------CCC-CC--TTC
T ss_pred             CcCCCCCC---cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCCCCCC----------------cch-hh--CCC
Confidence            99998887   68999999999994 455665    57899999999998843                333 33  889


Q ss_pred             cEEEEEecCccchhhhccccccccce-------eEEEEeccCCCCcccccccccccccceecccCCcce
Q 038877          167 NVLSWSLHSSLAVQKFLKYPKLLSIT-------QSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE  228 (298)
Q Consensus       167 ~~l~l~~~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  228 (298)
                      +.|++++|....++.      ...+|       +.|++++|..... +..+..+++|+.|++++|.+..
T Consensus       183 ~~L~Ls~N~L~~lp~------~~~~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          183 EALDVSTNLLESLPA------VPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             CEEECCSSCCSSCCC------CC--------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCH
T ss_pred             CEEECcCCCCCchhh------HHHhhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCC
Confidence            999999887664443      11255       8888888876543 3345568888888888888776

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.67  E-value=8.1e-16  Score=123.43  Aligned_cols=151  Identities=23%  Similarity=0.188  Sum_probs=111.9

Q ss_pred             CccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeeeccC
Q 038877            8 GAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLDLSW   86 (298)
Q Consensus         8 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~   86 (298)
                      .-+.++.+++.+..+|... .++|++|++++|.+..+++..+..+++|++|++++| .+..+|. .+..+++|++|++++
T Consensus        20 s~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             eCCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC
Confidence            3456777777777776532 378888888888887665555778888888888888 7777654 467788888888888


Q ss_pred             Ccccccchh-hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCC
Q 038877           87 TRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKH  165 (298)
Q Consensus        87 ~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  165 (298)
                      |.++.++.. +..+++|++|++++| .+..+|.. +.++++|+.|++++|.+..               .....+..+++
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~---------------~~~~~~~~l~~  160 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKS---------------IPHGAFDRLSS  160 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCC---------------CCTTTTTTCTT
T ss_pred             CcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCc---------------cCHHHHhCCCC
Confidence            888876643 677888888888888 45577765 6888888888888887743               22355677888


Q ss_pred             ccEEEEEecCcc
Q 038877          166 LNVLSWSLHSSL  177 (298)
Q Consensus       166 L~~l~l~~~~~~  177 (298)
                      |+.+++.+|...
T Consensus       161 L~~L~l~~N~~~  172 (229)
T 3e6j_A          161 LTHAYLFGNPWD  172 (229)
T ss_dssp             CCEEECTTSCBC
T ss_pred             CCEEEeeCCCcc
Confidence            888888887764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.67  E-value=5.7e-16  Score=123.52  Aligned_cols=157  Identities=16%  Similarity=0.209  Sum_probs=126.4

Q ss_pred             CcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCccccc-CchHHhcCCCccEEEccCCcCCccCCc-cccCccCC
Q 038877            2 KVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEI-TDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSL   79 (298)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L   79 (298)
                      ..+.|. -+.++++++.++.+|.. -...+++|++++|.+..+ +..++..+++|++|++++| .+..++. .+..+++|
T Consensus         7 ~~C~C~-~~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L   83 (220)
T 2v70_A            7 EKCRCE-GTTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGV   83 (220)
T ss_dssp             TTCEEE-TTEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTC
T ss_pred             CCCEEC-CCEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCC
Confidence            344443 36899999999988753 245678999999999866 4445889999999999999 7887754 78999999


Q ss_pred             CeeeccCCcccccch-hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHH
Q 038877           80 HHLDLSWTRIRGLPQ-ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMK  158 (298)
Q Consensus        80 ~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (298)
                      ++|++++|.++.++. .+..+++|++|++++|......+. .+.++++|+.|++++|.+..               ..+.
T Consensus        84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~---------------~~~~  147 (220)
T 2v70_A           84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITT---------------VAPG  147 (220)
T ss_dssp             CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCC---------------BCTT
T ss_pred             CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCE---------------ECHH
Confidence            999999999997764 588999999999999955444344 48999999999999999843               3456


Q ss_pred             hhcCCCCccEEEEEecCcc
Q 038877          159 ELLGLKHLNVLSWSLHSSL  177 (298)
Q Consensus       159 ~l~~l~~L~~l~l~~~~~~  177 (298)
                      .+..+++|+.+++++|...
T Consensus       148 ~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          148 AFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TTTTCTTCCEEECCSCCEE
T ss_pred             HhcCCCCCCEEEecCcCCc
Confidence            7788899999999988764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=6.3e-16  Score=121.15  Aligned_cols=132  Identities=19%  Similarity=0.241  Sum_probs=113.2

Q ss_pred             CCcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccc-cCchHHhcCCCccEEEccCCcCCc-cCCccccCccC
Q 038877            1 PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEE-ITDGFFRSMSSLRVLSLRRNLALS-KLPSGISNLVS   78 (298)
Q Consensus         1 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~-~~p~~~~~l~~   78 (298)
                      |.+..+++|++|++++|.+..++.+..+++|++|++++|.+.. .+.. +..+++|++|++++| .+. ..|..++.+++
T Consensus        60 ~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~  137 (197)
T 4ezg_A           60 TGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHS-AHDDSILTKINTLPK  137 (197)
T ss_dssp             TTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEECCSS-BCBGGGHHHHTTCSS
T ss_pred             HHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEecCC-ccCcHhHHHHhhCCC
Confidence            3467899999999999988888888999999999999999884 4444 889999999999999 666 46778899999


Q ss_pred             CCeeeccCCc-ccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCc
Q 038877           79 LHHLDLSWTR-IRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLW  138 (298)
Q Consensus        79 L~~L~l~~~~-~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  138 (298)
                      |++|++++|. ++.++ .+..+++|+.|++++|. +..++.  +..+++|+.|++++|.+.
T Consensus       138 L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          138 VNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC---
T ss_pred             CCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCcccC
Confidence            9999999997 88887 68999999999999994 555663  899999999999999874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.64  E-value=3.1e-17  Score=149.73  Aligned_cols=266  Identities=14%  Similarity=0.124  Sum_probs=132.8

Q ss_pred             cCCCccEEEeecCC--CcC--CCCC-CCCCcccEEEecCC-cccccCchHHhcCCCccEEEccCCc--------------
Q 038877            5 EWEGAKRISLMKTG--IQS--PSEI-PTCPRLVTFLLDGN-WIEEITDGFFRSMSSLRVLSLRRNL--------------   64 (298)
Q Consensus         5 ~~~~L~~L~l~~~~--~~~--~~~~-~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~--------------   64 (298)
                      .+++|+.|+++++.  +..  ++.+ ..+++|++|++++| .++.++.. +..+++|+.|+++.+.              
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~  260 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSGLSVA  260 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccchhhHHHHHHH
Confidence            67799999999886  221  2222 45788899998887 33344333 5666667766654331              


Q ss_pred             ----------------CCccCCccccCccCCCeeeccCCccc--ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCc
Q 038877           65 ----------------ALSKLPSGISNLVSLHHLDLSWTRIR--GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSK  126 (298)
Q Consensus        65 ----------------~~~~~p~~~~~l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~  126 (298)
                                      ....++..+..+++|++|++++|.++  .+...+..+++|+.|++.+| ........+...+++
T Consensus       261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~  339 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD  339 (594)
T ss_dssp             HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred             HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence                            01123333345677888888777655  23344566777777777766 211111112334666


Q ss_pred             ccEEEeecc---------CCccccc-c--------ccccccccC-chhHHHhhc-CCCCccEEEEEec-----Cccc---
Q 038877          127 LEVLRLLWC---------GLWSRKE-Q--------EEGSVLYDD-AEPLMKELL-GLKHLNVLSWSLH-----SSLA---  178 (298)
Q Consensus       127 L~~L~l~~~---------~~~~~~~-~--------~~~~~~~~~-~~~~~~~l~-~l~~L~~l~l~~~-----~~~~---  178 (298)
                      |+.|++.++         .++...- .        ......... .......+. .+++|+.|+++.+     ....   
T Consensus       340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~  419 (594)
T 2p1m_B          340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP  419 (594)
T ss_dssp             CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred             CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence            777766432         1110000 0        000000000 111222222 3455555555521     1111   


Q ss_pred             -hhhhccccccccceeEEEEeccCCCCcccccccc-cccccceecccCCcceeeecchhhhhccccccCCcccEEeccCC
Q 038877          179 -VQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAY-MENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYC  256 (298)
Q Consensus       179 -~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  256 (298)
                       ...+......+++|++|++++ ...+.....+.. +++|+.|++++|.+...++..+.       ..+++|+.|++++|
T Consensus       420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~-------~~~~~L~~L~L~~n  491 (594)
T 2p1m_B          420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVL-------SGCDSLRKLEIRDC  491 (594)
T ss_dssp             THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHH-------HHCTTCCEEEEESC
T ss_pred             hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHH-------hcCCCcCEEECcCC
Confidence             011111123334555555544 222222223333 56677777766665443222221       35788888888888


Q ss_pred             CCCCchh---hhhhcCCCcEEEeecCcc
Q 038877          257 QKAKDLT---WLVFAQNLKELRIDSCYD  281 (298)
Q Consensus       257 ~~l~~l~---~l~~~~~L~~L~l~~c~~  281 (298)
                      . +++..   ....+++|++|++.+|+.
T Consensus       492 ~-~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          492 P-FGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             S-CCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             C-CcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            4 45432   234578888888888865

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.64  E-value=2e-15  Score=121.15  Aligned_cols=129  Identities=27%  Similarity=0.368  Sum_probs=71.8

Q ss_pred             CCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeee
Q 038877            7 EGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLD   83 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~   83 (298)
                      ++|++|++++|.+..++  .+..+++|++|++++|.++.++...+..+++|++|++++| .++.++. .+..+++|++|+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEe
Confidence            44566666666655542  2355566666666666555555444555666666666666 5554433 345556666666


Q ss_pred             ccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCC
Q 038877           84 LSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus        84 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  137 (298)
                      +++|.+..+|..+..+++|++|++++| .+..++...+..+++|+.|++.+|.+
T Consensus       119 Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          119 MCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             CCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             ccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            666655555555555666666666655 33344433455566666666665554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.63  E-value=6.3e-15  Score=116.39  Aligned_cols=131  Identities=23%  Similarity=0.366  Sum_probs=114.3

Q ss_pred             CCCccEEEeecCCCcCCCC--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCee
Q 038877            6 WEGAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHL   82 (298)
Q Consensus         6 ~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L   82 (298)
                      .++|++|++++|.+..++.  +..+++|++|++++|.+..++...+..+++|++|++++| .+..+|. .+..+++|++|
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence            5689999999999998764  478999999999999999888776889999999999999 8887765 57899999999


Q ss_pred             eccCCcccccchh-hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCc
Q 038877           83 DLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLW  138 (298)
Q Consensus        83 ~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  138 (298)
                      ++++|.++.++.. +..+++|++|++++|. +..++...+..+++|+.|++++|.+.
T Consensus       106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             EcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee
Confidence            9999999977754 7899999999999994 55666666899999999999999873

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.63  E-value=2.8e-15  Score=119.52  Aligned_cols=129  Identities=26%  Similarity=0.320  Sum_probs=113.2

Q ss_pred             CCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeee
Q 038877            7 EGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLD   83 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~   83 (298)
                      ++++.|++++|.+..++  .+..+++|++|++++|.+..+.+..+..+++|++|++++| .+..+|. .+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEE
Confidence            57999999999999866  4588999999999999999776555999999999999999 8888876 468899999999


Q ss_pred             ccCCccccc-chhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCC
Q 038877           84 LSWTRIRGL-PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus        84 l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  137 (298)
                      +++|.+..+ +..+..+++|++|++++| .+..++...+..+++|+.|++++|.+
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            999999976 467899999999999999 45666665689999999999999987

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.63  E-value=5.5e-16  Score=119.22  Aligned_cols=131  Identities=19%  Similarity=0.236  Sum_probs=82.9

Q ss_pred             cccCCCccEEEeecCCCcCCCCCCCCC-cccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCcc-ccCccCCC
Q 038877            3 VEEWEGAKRISLMKTGIQSPSEIPTCP-RLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSLH   80 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~-~~~l~~L~   80 (298)
                      +..+++|+.|++++|.+..++.+..+. +|++|++++|.+..++ . +..+++|++|++++| .+..+|+. +..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~-~-l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-G-FPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-C-CCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc-c-cccCCCCCEEECCCC-cccccCcchhhcCCCCC
Confidence            455667777777777776666554433 7777777777666552 2 666777777777777 66655543 36667777


Q ss_pred             eeeccCCcccccch--hhcCCCcccEEeccCCccCCCCchh---hhcCCCcccEEEeeccCC
Q 038877           81 HLDLSWTRIRGLPQ--ELKALEKLRYLSLEGTRHLSIIPHQ---LISGFSKLEVLRLLWCGL  137 (298)
Q Consensus        81 ~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~  137 (298)
                      +|++++|.+..+|.  .+..+++|+.|++++|.. ..+|..   .+..+++|+.|++++|..
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            77777776666665  566667777777776633 344432   356666666666666654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=2.4e-15  Score=114.67  Aligned_cols=127  Identities=18%  Similarity=0.174  Sum_probs=64.5

Q ss_pred             CCccEEEeecCCCc--CCCCC-CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCcc-CCccccCccCCCee
Q 038877            7 EGAKRISLMKTGIQ--SPSEI-PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSK-LPSGISNLVSLHHL   82 (298)
Q Consensus         7 ~~L~~L~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L   82 (298)
                      ++|+.|++++|.+.  .+|.. ..+++|++|++++|.+..+ .. +..+++|++|++++| .+.. +|..+..+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SN-LPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SS-CCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hh-hccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEE
Confidence            44555555555555  34433 4455555555555555544 22 455555555555555 4443 44444445555555


Q ss_pred             eccCCcccccc--hhhcCCCcccEEeccCCccCCCCch---hhhcCCCcccEEEeeccCC
Q 038877           83 DLSWTRIRGLP--QELKALEKLRYLSLEGTRHLSIIPH---QLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus        83 ~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~  137 (298)
                      ++++|.++.++  ..+..+++|++|++++|.. ..++.   ..+..+++|+.|++++|..
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCCh
Confidence            55555555443  3455555555555555532 23332   2245555555555555544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.60  E-value=7.1e-15  Score=132.52  Aligned_cols=178  Identities=19%  Similarity=0.180  Sum_probs=128.7

Q ss_pred             cccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEEeccC
Q 038877           30 RLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEG  109 (298)
Q Consensus        30 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~  109 (298)
                      +++.|++++|.++.+|...   .++|++|++++| .++.+|   ..+++|++|++++|.++.+|. +..  +|++|++++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC---CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhH---cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence            7888999998888777652   377899999998 787777   457889999999988888887 544  889999988


Q ss_pred             CccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccc
Q 038877          110 TRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLL  189 (298)
Q Consensus       110 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~  189 (298)
                      |. ++.+|.    .+++|+.|++++|.+..                ++.   .+++|+.|++++|....++.      ..
T Consensus       130 N~-l~~lp~----~l~~L~~L~Ls~N~l~~----------------lp~---~l~~L~~L~Ls~N~L~~lp~------l~  179 (571)
T 3cvr_A          130 NQ-LTMLPE----LPALLEYINADNNQLTM----------------LPE---LPTSLEVLSVRNNQLTFLPE------LP  179 (571)
T ss_dssp             SC-CSCCCC----CCTTCCEEECCSSCCSC----------------CCC---CCTTCCEEECCSSCCSCCCC------CC
T ss_pred             Cc-CCCCCC----cCccccEEeCCCCccCc----------------CCC---cCCCcCEEECCCCCCCCcch------hh
Confidence            84 444665    57889999999888843                222   46788888888887655433      11


Q ss_pred             cceeEEEEeccCCCCcccccccccccc-------cceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCc
Q 038877          190 SITQSVGVYFCQSPPLNVLHLAYMENL-------QELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKD  261 (298)
Q Consensus       190 ~~L~~L~l~~~~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  261 (298)
                      ++|+.|++++|.......  +..  +|       +.|++++|.+..++....         .+++|+.|++++| .++.
T Consensus       180 ~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~---------~l~~L~~L~L~~N-~l~~  244 (571)
T 3cvr_A          180 ESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCRENRITHIPENIL---------SLDPTCTIILEDN-PLSS  244 (571)
T ss_dssp             TTCCEEECCSSCCSSCCC--CC----------CCEEEECCSSCCCCCCGGGG---------GSCTTEEEECCSS-SCCH
T ss_pred             CCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCCcceecCHHHh---------cCCCCCEEEeeCC-cCCC
Confidence            778888888887653332  332  55       888888888876543332         4788888888888 4544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.60  E-value=6.1e-15  Score=117.55  Aligned_cols=130  Identities=22%  Similarity=0.260  Sum_probs=112.0

Q ss_pred             CCccEEEeecCCCcCCC-C--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCee
Q 038877            7 EGAKRISLMKTGIQSPS-E--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHL   82 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~-~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L   82 (298)
                      ..++.|++++|.++.++ .  +..+++|++|++++|.+..++...+..+++|++|++++| .+..++. .+..+++|++|
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L  110 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTL  110 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEE
Confidence            46789999999999863 2  478999999999999999888766999999999999999 7877654 68899999999


Q ss_pred             eccCCccccc-chhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCc
Q 038877           83 DLSWTRIRGL-PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLW  138 (298)
Q Consensus        83 ~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  138 (298)
                      ++++|.+..+ |..+..+++|++|++++|.. ..++...+..+++|+.|++++|.+.
T Consensus       111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQI-TTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             ECTTSCCCCBCTTSSTTCTTCSEEECTTSCC-CCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ECCCCcCCeECHhHcCCCccCCEEECCCCcC-CEECHHHhcCCCCCCEEEecCcCCc
Confidence            9999999976 57789999999999999954 4553334899999999999999873

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.59  E-value=2.8e-15  Score=128.56  Aligned_cols=154  Identities=18%  Similarity=0.168  Sum_probs=101.9

Q ss_pred             cEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHh-cCCCccEEEccCCcCCccCC-ccccCccCCCeeeccCC
Q 038877           10 KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFR-SMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLDLSWT   87 (298)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~   87 (298)
                      +.++++++.+..+|.. -.+.++.|++++|.+..++...+. .+++|++|++++| .+..++ ..+..+++|++|++++|
T Consensus        21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC
Confidence            5677777777777642 134577888888877766665455 7788888888888 676664 45777888888888888


Q ss_pred             cccccch-hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCc
Q 038877           88 RIRGLPQ-ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHL  166 (298)
Q Consensus        88 ~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L  166 (298)
                      .++.++. .+..+++|++|++++|.. ..++...+.++++|+.|++++|.+..           . .......+..+++|
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~L~~N~l~~-----------l-~~~~~~~~~~l~~L  165 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQISR-----------F-PVELIKDGNKLPKL  165 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCS-----------C-CGGGTC----CTTC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcc-cEECHHHhCCcccCCEEECCCCcCCe-----------e-CHHHhcCcccCCcC
Confidence            7776654 467788888888888743 44433347778888888888887743           0 00111112456777


Q ss_pred             cEEEEEecCccc
Q 038877          167 NVLSWSLHSSLA  178 (298)
Q Consensus       167 ~~l~l~~~~~~~  178 (298)
                      +.|++++|....
T Consensus       166 ~~L~L~~N~l~~  177 (361)
T 2xot_A          166 MLLDLSSNKLKK  177 (361)
T ss_dssp             CEEECCSSCCCC
T ss_pred             CEEECCCCCCCc
Confidence            777777766543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=2.4e-15  Score=112.30  Aligned_cols=124  Identities=21%  Similarity=0.213  Sum_probs=84.8

Q ss_pred             CCCccEEEeecCCCc--CCCCC-CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCcc-CCccccCccCCCe
Q 038877            6 WEGAKRISLMKTGIQ--SPSEI-PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSK-LPSGISNLVSLHH   81 (298)
Q Consensus         6 ~~~L~~L~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~   81 (298)
                      .++|+.|++++|.+.  .+|.. ..+++|++|++++|.+..+ .. +..+++|++|++++| .+.. +|..+..+++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-AN-LPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TT-CCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hh-hhcCCCCCEEECCCC-cccchHHHHhhhCCCCCE
Confidence            466777788777777  45544 6677777777777777665 32 677777777777777 6655 5666666777777


Q ss_pred             eeccCCcccccc--hhhcCCCcccEEeccCCccCCCCch---hhhcCCCcccEEEee
Q 038877           82 LDLSWTRIRGLP--QELKALEKLRYLSLEGTRHLSIIPH---QLISGFSKLEVLRLL  133 (298)
Q Consensus        82 L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~  133 (298)
                      |++++|.++.++  ..++.+++|++|++++|.. ..++.   ..++.+++|+.|+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccCC
Confidence            777777777654  5677777777777777743 33333   346677777777654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.59  E-value=3.4e-15  Score=128.06  Aligned_cols=154  Identities=24%  Similarity=0.242  Sum_probs=125.5

Q ss_pred             CCccEEEeecCCCcCCCC--CC-CCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCee
Q 038877            7 EGAKRISLMKTGIQSPSE--IP-TCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHL   82 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L   82 (298)
                      ..++.|++++|.++.++.  +. .+++|++|++++|.+..++...+..+++|++|++++| .+..++. .+..+++|++|
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L  117 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVL  117 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEE
Confidence            458999999999998653  34 8999999999999999888766899999999999999 7887754 68899999999


Q ss_pred             eccCCccccc-chhhcCCCcccEEeccCCccCCCCchhhh---cCCCcccEEEeeccCCccccccccccccccCchhHHH
Q 038877           83 DLSWTRIRGL-PQELKALEKLRYLSLEGTRHLSIIPHQLI---SGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMK  158 (298)
Q Consensus        83 ~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (298)
                      ++++|.+..+ +..+..+++|+.|++++| .+..+|...+   ..+++|+.|++++|.+..               ....
T Consensus       118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------l~~~  181 (361)
T 2xot_A          118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKK---------------LPLT  181 (361)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCC---------------CCHH
T ss_pred             ECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCc---------------cCHH
Confidence            9999999966 567899999999999999 5667777655   679999999999999843               2234


Q ss_pred             hhcCCCC--ccEEEEEecCcc
Q 038877          159 ELLGLKH--LNVLSWSLHSSL  177 (298)
Q Consensus       159 ~l~~l~~--L~~l~l~~~~~~  177 (298)
                      .+..++.  ++.+++.+|...
T Consensus       182 ~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          182 DLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             HHHHSCHHHHTTEECCSSCEE
T ss_pred             HhhhccHhhcceEEecCCCcc
Confidence            4555555  477888887653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=1.2e-14  Score=110.84  Aligned_cols=136  Identities=24%  Similarity=0.228  Sum_probs=109.3

Q ss_pred             CCCCcccEEEecCCccc--ccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccc-cchhhcCCCcc
Q 038877           26 PTCPRLVTFLLDGNWIE--EITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRG-LPQELKALEKL  102 (298)
Q Consensus        26 ~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L  102 (298)
                      ...++|++|++++|.+.  .++.. +..+++|++|++++| .+..+ ..+..+++|++|++++|.+.. +|..+..+++|
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             CCcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence            34588999999999887  77766 788999999999999 78777 678889999999999999886 77778889999


Q ss_pred             cEEeccCCccCCCCch-hhhcCCCcccEEEeeccCCccccccccccccccCchh-HHHhhcCCCCccEEEEEecCccc
Q 038877          103 RYLSLEGTRHLSIIPH-QLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEP-LMKELLGLKHLNVLSWSLHSSLA  178 (298)
Q Consensus       103 ~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~L~~l~l~~~~~~~  178 (298)
                      ++|++++| .+..++. ..+..+++|+.|++++|.+..             ... ....+..+++|+.++++.+....
T Consensus        98 ~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-------------~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           98 THLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTN-------------LNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGT-------------STTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             CEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcc-------------hHHHHHHHHHhCccCcEecCCCCChhh
Confidence            99999999 4555542 348899999999999998843             111 12467888999999998876543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=8.2e-14  Score=108.62  Aligned_cols=124  Identities=26%  Similarity=0.406  Sum_probs=104.0

Q ss_pred             cEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeeeccCCc
Q 038877           10 KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLDLSWTR   88 (298)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~   88 (298)
                      +.++++++.+..+|.. -.++|++|++++|.+..++.. +..+++|++|++++| .++.++ ..|..+++|++|++++|.
T Consensus        13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence            6788899988888753 246899999999999888865 889999999999999 787765 468889999999999999


Q ss_pred             ccccch-hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCC
Q 038877           89 IRGLPQ-ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus        89 ~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  137 (298)
                      ++.++. .+..+++|++|++++| .+..++.+.+..+++|+.|++++|.+
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence            987764 6888999999999998 45667766688899999999998877

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.54  E-value=1.1e-13  Score=106.43  Aligned_cols=134  Identities=21%  Similarity=0.311  Sum_probs=111.1

Q ss_pred             CcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCC
Q 038877            2 KVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLH   80 (298)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~   80 (298)
                      ..+.| ..+.+++.++.+..+|.. -.++|++|++++|.+..++...+..+++|++|++++| .+..+|. .++.+++|+
T Consensus         3 ~~C~C-~~~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~   79 (177)
T 2o6r_A            3 SRCSC-SGTEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLT   79 (177)
T ss_dssp             TTCEE-ETTEEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred             CCCEe-CCCEEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccC
Confidence            33444 467899999999888743 3479999999999998888766889999999999999 8887765 478899999


Q ss_pred             eeeccCCcccccchh-hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcc
Q 038877           81 HLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWS  139 (298)
Q Consensus        81 ~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  139 (298)
                      +|++++|.++.++.. +..+++|++|++++| .+..++...+..+++|+.|++++|.+..
T Consensus        80 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           80 ILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             EEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence            999999999977754 688999999999999 4567777667889999999999998843

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.54  E-value=4.7e-14  Score=109.92  Aligned_cols=133  Identities=19%  Similarity=0.288  Sum_probs=107.2

Q ss_pred             CcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCch-HHhcCCCccEEEccCCcCCccC-CccccCccCC
Q 038877            2 KVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDG-FFRSMSSLRVLSLRRNLALSKL-PSGISNLVSL   79 (298)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L   79 (298)
                      ..+.|. -+.++++++.+..+|... ..++++|++++|.+..++.. ++..+++|++|++++| .++.+ |..+..+++|
T Consensus         4 ~~C~C~-~~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L   80 (192)
T 1w8a_A            4 AMCHCE-GTTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHI   80 (192)
T ss_dssp             TTSEEE-TTEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTC
T ss_pred             CCCEEC-CCEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccC
Confidence            344443 378999999998887532 33899999999999877653 4889999999999999 77766 6788999999


Q ss_pred             CeeeccCCcccccch-hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCc
Q 038877           80 HHLDLSWTRIRGLPQ-ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLW  138 (298)
Q Consensus        80 ~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  138 (298)
                      ++|++++|.++.++. .+..+++|++|++++|...+..|. .+..+++|+.|++++|.+.
T Consensus        81 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBC
T ss_pred             CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCcc
Confidence            999999999996654 488899999999999955444455 4889999999999999874

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=1.7e-14  Score=107.67  Aligned_cols=129  Identities=20%  Similarity=0.259  Sum_probs=100.2

Q ss_pred             CCCcccEEEecCCccc--ccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccc-cchhhcCCCccc
Q 038877           27 TCPRLVTFLLDGNWIE--EITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRG-LPQELKALEKLR  103 (298)
Q Consensus        27 ~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~  103 (298)
                      ..++++.|++++|.+.  .++.. +..+++|++|++++| .+..+ ..++.+++|++|++++|.+.. +|..+..+++|+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             CCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            4578999999999887  67665 788999999999999 77776 668889999999999998886 777788899999


Q ss_pred             EEeccCCccCCCCc-hhhhcCCCcccEEEeeccCCccccccccccccccCchhH-HHhhcCCCCccEEEEE
Q 038877          104 YLSLEGTRHLSIIP-HQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPL-MKELLGLKHLNVLSWS  172 (298)
Q Consensus       104 ~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~l~l~  172 (298)
                      +|++++|. +..++ ...++.+++|+.|++++|.+..             .... ...+..+++|+.++++
T Consensus        92 ~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~-------------~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           92 HLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTN-------------LNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGG-------------STTHHHHHHHHCTTCCEETTB
T ss_pred             EEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccc-------------hHHHHHHHHHHCCCcccccCC
Confidence            99999984 45543 1238889999999999998843             1111 1456677888877653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=1.4e-13  Score=105.62  Aligned_cols=109  Identities=21%  Similarity=0.280  Sum_probs=97.7

Q ss_pred             CcccCC-CccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc--cccCccC
Q 038877            2 KVEEWE-GAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS--GISNLVS   78 (298)
Q Consensus         2 ~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~--~~~~l~~   78 (298)
                      .+..+. +|+.|++++|.+.+++.+..+++|++|++++|.+..+++..+..+++|++|++++| .++.+|.  .+..+++
T Consensus        36 ~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~  114 (176)
T 1a9n_A           36 NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKS  114 (176)
T ss_dssp             CGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTT
T ss_pred             HhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCC
Confidence            355555 99999999999999888899999999999999999888776799999999999999 8888876  7889999


Q ss_pred             CCeeeccCCcccccchh----hcCCCcccEEeccCCc
Q 038877           79 LHHLDLSWTRIRGLPQE----LKALEKLRYLSLEGTR  111 (298)
Q Consensus        79 L~~L~l~~~~~~~l~~~----~~~l~~L~~L~l~~~~  111 (298)
                      |++|++++|.+..+|..    +..+++|+.|+++++.
T Consensus       115 L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          115 LTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            99999999999988874    8999999999998873

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.46  E-value=2.7e-13  Score=122.60  Aligned_cols=104  Identities=19%  Similarity=0.214  Sum_probs=71.7

Q ss_pred             cccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEEeccC
Q 038877           30 RLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEG  109 (298)
Q Consensus        30 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~  109 (298)
                      .|++|++++|.+..+|.  ++.+++|++|++++| .+..+|..++.+++|++|++++|.++.+| .++.+++|+.|++++
T Consensus       442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence            36777777777766664  667777777777777 66677777777777777777777777766 667777777777777


Q ss_pred             CccCCCC-chhhhcCCCcccEEEeeccCCc
Q 038877          110 TRHLSII-PHQLISGFSKLEVLRLLWCGLW  138 (298)
Q Consensus       110 ~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~  138 (298)
                      |...+.. |.. ++++++|+.|++++|.+.
T Consensus       518 N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          518 NRLQQSAAIQP-LVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             SCCCSSSTTGG-GGGCTTCCEEECTTSGGG
T ss_pred             CCCCCCCCcHH-HhcCCCCCEEEecCCcCC
Confidence            7433332 443 677777777777777664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.44  E-value=1.9e-13  Score=106.45  Aligned_cols=127  Identities=20%  Similarity=0.235  Sum_probs=103.3

Q ss_pred             ccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc--cccCccCCCeeeccCCccccc-chhhcCCCcccEEec
Q 038877           31 LVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS--GISNLVSLHHLDLSWTRIRGL-PQELKALEKLRYLSL  107 (298)
Q Consensus        31 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l  107 (298)
                      -++++++++.++.+|.. +  ..++++|++++| .+..++.  .++.+++|++|++++|.++.+ |..+..+++|++|++
T Consensus        10 ~~~l~~s~~~l~~ip~~-~--~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRD-I--PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCSSCCSC-C--CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEcCCCCcCcCccC-C--CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            37899999999888875 2  238999999999 8887765  388999999999999999966 678999999999999


Q ss_pred             cCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCcc
Q 038877          108 EGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSL  177 (298)
Q Consensus       108 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~  177 (298)
                      ++|.. ..++...+.++++|+.|++++|.+.               ...+..+..+++|+.+++++|...
T Consensus        86 s~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~---------------~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           86 GENKI-KEISNKMFLGLHQLKTLNLYDNQIS---------------CVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSCCC-CEECSSSSTTCTTCCEEECCSSCCC---------------EECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCcC-CccCHHHhcCCCCCCEEECCCCcCC---------------eeCHHHhhcCCCCCEEEeCCCCcc
Confidence            99954 4455445889999999999999984               344566778888888888877654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.44  E-value=5.2e-13  Score=104.05  Aligned_cols=127  Identities=23%  Similarity=0.252  Sum_probs=104.5

Q ss_pred             ccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccc-hhhcCCCcccEEeccC
Q 038877           31 LVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLP-QELKALEKLRYLSLEG  109 (298)
Q Consensus        31 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~  109 (298)
                      -++++++++.+..+|.. +  .++|++|++++| .+..+|..+..+++|++|++++|.++.++ ..+..+++|++|++++
T Consensus        12 ~~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKG-I--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TTEEECTTSCCSSCCSC-C--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCCCcCCCC-C--CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            36789999998888865 2  368999999999 88899988999999999999999999776 4689999999999999


Q ss_pred             CccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCcc
Q 038877          110 TRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSL  177 (298)
Q Consensus       110 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~  177 (298)
                      |. +..++...+.++++|+.|++++|.+..               .....+..+++|+.+++++|...
T Consensus        88 N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NR-LRCIPPRTFDGLKSLRLLSLHGNDISV---------------VPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SC-CCBCCTTTTTTCTTCCEEECCSSCCCB---------------CCTTTTTTCTTCCEEECCSSCEE
T ss_pred             Cc-cCEeCHHHhCCCCCCCEEECCCCCCCe---------------eChhhhhcCccccEEEeCCCCee
Confidence            94 556665558999999999999999843               22345677888999988877653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.43  E-value=3.3e-13  Score=125.62  Aligned_cols=111  Identities=26%  Similarity=0.301  Sum_probs=96.7

Q ss_pred             CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccE
Q 038877           25 IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRY  104 (298)
Q Consensus        25 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~  104 (298)
                      +..++.|++|++++|.+..++.. +..+++|++|++++| .++.+|..++.+++|++|+|++|.++.+|..++.+++|++
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY  297 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred             hccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence            36788999999999988888877 558999999999999 8888898899999999999999999999988999999999


Q ss_pred             EeccCCccCCCCchhhhcCCCcccEEEeeccCCcc
Q 038877          105 LSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWS  139 (298)
Q Consensus       105 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  139 (298)
                      |++++| .++.+|.. ++++++|+.|++++|.+.+
T Consensus       298 L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          298 FYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             EECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCCS
T ss_pred             EECCCC-CCCccChh-hhcCCCccEEeCCCCccCC
Confidence            999998 55788886 8999999999999998854

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.43  E-value=1.7e-13  Score=127.59  Aligned_cols=151  Identities=19%  Similarity=0.190  Sum_probs=98.4

Q ss_pred             CCccEEEeecCCCcCCCC-CCCCCcccEEE-----ecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCC
Q 038877            7 EGAKRISLMKTGIQSPSE-IPTCPRLVTFL-----LDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH   80 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~-----l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~   80 (298)
                      ++++.|++.++.+...+. ......|..+.     +..+.+. ++...+..++.|++|++++| .+..+|..+..+++|+
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~  250 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLT  250 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGGCCSCS
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCC
Confidence            456778888877766442 22333333333     3333333 34444889999999999999 8889998888999999


Q ss_pred             eeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh
Q 038877           81 HLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL  160 (298)
Q Consensus        81 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  160 (298)
                      +|+|++|.++.+|..++.+++|++|++++|. +..+|.. ++++++|+.|++++|.+..                ++..+
T Consensus       251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~----------------lp~~~  312 (727)
T 4b8c_D          251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE-LGSCFQLKYFYFFDNMVTT----------------LPWEF  312 (727)
T ss_dssp             CCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS-GGGGTTCSEEECCSSCCCC----------------CCSST
T ss_pred             EEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh-hcCCCCCCEEECCCCCCCc----------------cChhh
Confidence            9999999999999999999999999999995 5588886 8999999999999998843                66778


Q ss_pred             cCCCCccEEEEEecCcc
Q 038877          161 LGLKHLNVLSWSLHSSL  177 (298)
Q Consensus       161 ~~l~~L~~l~l~~~~~~  177 (298)
                      ..+++|+.|++++|...
T Consensus       313 ~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          313 GNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             TSCTTCCCEECTTSCCC
T ss_pred             hcCCCccEEeCCCCccC
Confidence            99999999999998875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=2.4e-15  Score=117.95  Aligned_cols=107  Identities=28%  Similarity=0.336  Sum_probs=62.1

Q ss_pred             CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEE
Q 038877           26 PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYL  105 (298)
Q Consensus        26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L  105 (298)
                      ..+++|++|++++|.+..++ . +..+++|++|++++| .+..+|..+..+++|++|++++|.++.+| .+..+++|++|
T Consensus        45 ~~l~~L~~L~ls~n~l~~l~-~-~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L  120 (198)
T 1ds9_A           45 STLKACKHLALSTNNIEKIS-S-LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL  120 (198)
T ss_dssp             HHTTTCSEEECSEEEESCCC-C-HHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred             hcCCCCCEEECCCCCCcccc-c-cccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence            45566666666666655555 2 556666666666666 55555555555566666666666666554 45556666666


Q ss_pred             eccCCccCCCCch-hhhcCCCcccEEEeeccCC
Q 038877          106 SLEGTRHLSIIPH-QLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus       106 ~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~  137 (298)
                      ++++|. +..++. ..+..+++|+.|++++|.+
T Consensus       121 ~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          121 YMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             ECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence            666652 333332 2255666666666666655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.39  E-value=1.3e-12  Score=118.12  Aligned_cols=151  Identities=22%  Similarity=0.290  Sum_probs=109.9

Q ss_pred             CCCCcccEEE-ecCCcccccCch-----HHhc--CCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhc
Q 038877           26 PTCPRLVTFL-LDGNWIEEITDG-----FFRS--MSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELK   97 (298)
Q Consensus        26 ~~~~~L~~L~-l~~~~~~~~~~~-----~~~~--~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~   97 (298)
                      ..+++|+.|+ +..+.+..++..     .+..  ...|++|++++| .++.+|. ++.+++|++|++++|.++.+|..++
T Consensus       406 ~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~  483 (567)
T 1dce_A          406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALA  483 (567)
T ss_dssp             HHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGG
T ss_pred             HHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhh
Confidence            4567777777 454433322210     0111  135889999999 8888886 8889999999999999989998999


Q ss_pred             CCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhH-HHhhcCCCCccEEEEEecCc
Q 038877           98 ALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPL-MKELLGLKHLNVLSWSLHSS  176 (298)
Q Consensus        98 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~l~l~~~~~  176 (298)
                      .+++|+.|++++|. ++.+| . ++++++|+.|++++|.+.+               .. +..+..+++|+.|++++|..
T Consensus       484 ~l~~L~~L~Ls~N~-l~~lp-~-l~~l~~L~~L~Ls~N~l~~---------------~~~p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          484 ALRCLEVLQASDNA-LENVD-G-VANLPRLQELLLCNNRLQQ---------------SAAIQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             GCTTCCEEECCSSC-CCCCG-G-GTTCSSCCEEECCSSCCCS---------------SSTTGGGGGCTTCCEEECTTSGG
T ss_pred             cCCCCCEEECCCCC-CCCCc-c-cCCCCCCcEEECCCCCCCC---------------CCCcHHHhcCCCCCEEEecCCcC
Confidence            99999999999984 45577 3 8999999999999998843               22 67788899999999999888


Q ss_pred             cchhh-hccccccccceeEEE
Q 038877          177 LAVQK-FLKYPKLLSITQSVG  196 (298)
Q Consensus       177 ~~~~~-~~~~~~~~~~L~~L~  196 (298)
                      ..... ........++|+.|+
T Consensus       546 ~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          546 CQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             GGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCccHHHHHHHHCcccCccC
Confidence            66543 222233456677664

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.38  E-value=9.8e-13  Score=111.25  Aligned_cols=241  Identities=13%  Similarity=0.115  Sum_probs=127.7

Q ss_pred             CCCccEEEeecCCCcCCCCC-CCCCcccEEEecCCcccccCchHHhc--------CCCccEEEccCCcCCccCC-ccccC
Q 038877            6 WEGAKRISLMKTGIQSPSEI-PTCPRLVTFLLDGNWIEEITDGFFRS--------MSSLRVLSLRRNLALSKLP-SGISN   75 (298)
Q Consensus         6 ~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~~p-~~~~~   75 (298)
                      +++|+.|++++|.+..+... ..++.++.+.+..+   .++..+|..        +++|+.+++..  .+..++ .+|.+
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~  122 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKG  122 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTT
T ss_pred             hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhc
Confidence            67899999999988732111 22333445555555   445555777        88888888887  355554 46888


Q ss_pred             ccCCCeeeccCCcccccc-hhhcCCCcccEEeccCCc---cCCCCchhhhcCCCccc-EEEeeccCCccccccccccccc
Q 038877           76 LVSLHHLDLSWTRIRGLP-QELKALEKLRYLSLEGTR---HLSIIPHQLISGFSKLE-VLRLLWCGLWSRKEQEEGSVLY  150 (298)
Q Consensus        76 l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~  150 (298)
                      |.+|+.+++..+.+..++ ..+..+.++..+......   ....+....+.++..|+ .+.+......            
T Consensus       123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l------------  190 (329)
T 3sb4_A          123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKL------------  190 (329)
T ss_dssp             CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCH------------
T ss_pred             CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcH------------
Confidence            888999999888776555 346666666666655421   11223333345556665 4444332210            


Q ss_pred             cCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceee
Q 038877          151 DDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMK  230 (298)
Q Consensus       151 ~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  230 (298)
                        .......-....+++.+.+.+.-..  ..+......++.|+.+++.++........++.++++|+++++.++ +..++
T Consensus       191 --~~~~~~~~~~~~~~~~l~~~~~l~~--~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~  265 (329)
T 3sb4_A          191 --EDEIMKAGLQPRDINFLTIEGKLDN--ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIG  265 (329)
T ss_dssp             --HHHHHHTTCCGGGCSEEEEEECCCH--HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred             --HHHHhhcccCccccceEEEeeeecH--HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceeh
Confidence              1111111123344555555433211  111111122455666666655444444455666666666666655 33344


Q ss_pred             ecchhhhhccccccCCccc-EEeccCCCCCCchh--hhhhcCCCcEEEeec
Q 038877          231 IDSAEEVKKLFRSGFRSLN-TVSVDYCQKAKDLT--WLVFAQNLKELRIDS  278 (298)
Q Consensus       231 ~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~l~--~l~~~~~L~~L~l~~  278 (298)
                      ...+        .++++|+ .+++.+  .++.++  ....|++|+++++.+
T Consensus       266 ~~aF--------~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~  306 (329)
T 3sb4_A          266 QRVF--------SNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG  306 (329)
T ss_dssp             TTTT--------TTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS
T ss_pred             HHHh--------hCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC
Confidence            4444        4556666 666655  444443  234556666666543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.35  E-value=7.8e-12  Score=95.94  Aligned_cols=110  Identities=25%  Similarity=0.373  Sum_probs=95.4

Q ss_pred             CCCccEEEeecCCCcCCCC--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCee
Q 038877            6 WEGAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHL   82 (298)
Q Consensus         6 ~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L   82 (298)
                      .++|+.|++++|.+..++.  +..+++|++|++++|.+..++...+..+++|++|++++| .++.+|. .+..+++|++|
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L  105 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKEL  105 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEE
Confidence            4789999999999998764  478999999999999999888776889999999999999 8887765 57889999999


Q ss_pred             eccCCcccccchh-hcCCCcccEEeccCCccCCCC
Q 038877           83 DLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSII  116 (298)
Q Consensus        83 ~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~  116 (298)
                      ++++|.++.++.. +..+++|++|++++|......
T Consensus       106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A          106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             ECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            9999999988765 578999999999999655443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.35  E-value=1.1e-14  Score=114.08  Aligned_cols=131  Identities=24%  Similarity=0.292  Sum_probs=110.2

Q ss_pred             CcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCe
Q 038877            2 KVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHH   81 (298)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~   81 (298)
                      .+.++++|++|++++|.+..+|.+..+++|++|++++|.+..++.. +..+++|++|++++| .+..+| .+..+++|++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~  119 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYN-QIASLS-GIEKLVNLRV  119 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSE
T ss_pred             HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCC-cCCcCC-ccccCCCCCE
Confidence            3677899999999999999998778899999999999999888875 778899999999999 888777 5888999999


Q ss_pred             eeccCCcccccch--hhcCCCcccEEeccCCccCCCCc---------hhhhcCCCcccEEEeeccCC
Q 038877           82 LDLSWTRIRGLPQ--ELKALEKLRYLSLEGTRHLSIIP---------HQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus        82 L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~---------~~~~~~l~~L~~L~l~~~~~  137 (298)
                      |++++|.+..++.  .+..+++|++|++++|......|         ...+..+++|+.|+  ++.+
T Consensus       120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred             EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence            9999999997764  68999999999999995533322         22367888999887  4444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.31  E-value=2e-11  Score=93.37  Aligned_cols=101  Identities=22%  Similarity=0.338  Sum_probs=58.1

Q ss_pred             cEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccCCcccccchh-hcCCCcccEEeccC
Q 038877           32 VTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSWTRIRGLPQE-LKALEKLRYLSLEG  109 (298)
Q Consensus        32 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~  109 (298)
                      +.++++++.++.+|.. +  .++|++|++++| .+..+ |..+..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus        15 ~~l~~~~n~l~~iP~~-~--~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAG-I--PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCSSCCSC-C--CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCCccCCC-c--CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            4555666655555543 2  255666666666 55544 34555666666666666666655543 45666666666666


Q ss_pred             CccCCCCchhhhcCCCcccEEEeeccCC
Q 038877          110 TRHLSIIPHQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus       110 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~  137 (298)
                      | .+..++...+.++++|+.|++++|.+
T Consensus        91 N-~l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           91 N-HLKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             S-CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             C-ccceeCHHHhccccCCCEEEeCCCCc
Confidence            6 33445544466666666666666665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.30  E-value=1.8e-11  Score=93.23  Aligned_cols=102  Identities=27%  Similarity=0.371  Sum_probs=52.2

Q ss_pred             ccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccCCcccccchh-hcCCCcccEEecc
Q 038877           31 LVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSWTRIRGLPQE-LKALEKLRYLSLE  108 (298)
Q Consensus        31 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~  108 (298)
                      .++++++++.+..+|.. +  .++|++|++++| .+..+ |..+..+++|++|++++|.++.++.. +..+++|++|+++
T Consensus        11 ~~~l~~s~n~l~~ip~~-~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTG-I--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSSCCSC-C--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCccCcc-C--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            34455555555544443 1  244555555555 44444 33455555555555555555544432 3555555555555


Q ss_pred             CCccCCCCchhhhcCCCcccEEEeeccCC
Q 038877          109 GTRHLSIIPHQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus       109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  137 (298)
                      +| .+..++.+.+.++++|+.|++++|.+
T Consensus        87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           87 DN-QLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             SS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CC-ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            55 23344443355566666666666655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.26  E-value=3e-11  Score=92.34  Aligned_cols=102  Identities=21%  Similarity=0.339  Sum_probs=84.8

Q ss_pred             ccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCcc-ccCccCCCeeeccCC
Q 038877            9 AKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSLHHLDLSWT   87 (298)
Q Consensus         9 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~   87 (298)
                      -+.++++++.+..+|... .++|++|++++|.+..+++..+..+++|++|++++| .+..+|.. +..+++|++|++++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence            468899999888887532 388999999999988776655888999999999999 88888664 678899999999999


Q ss_pred             cccccchh-hcCCCcccEEeccCCcc
Q 038877           88 RIRGLPQE-LKALEKLRYLSLEGTRH  112 (298)
Q Consensus        88 ~~~~l~~~-~~~l~~L~~L~l~~~~~  112 (298)
                      .++.++.. +..+++|++|++++|..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCc
Confidence            99888765 88899999999998843

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.25  E-value=3.2e-11  Score=91.83  Aligned_cols=104  Identities=20%  Similarity=0.283  Sum_probs=86.7

Q ss_pred             CccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeeeccC
Q 038877            8 GAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLDLSW   86 (298)
Q Consensus         8 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~   86 (298)
                      ..+.++++++.++.+|... .++|++|++++|.+..+++..+..+++|++|++++| .+..+|. .+..+++|++|++++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence            4678999999998887532 488999999999998876665889999999999999 7887765 468899999999999


Q ss_pred             Ccccccch-hhcCCCcccEEeccCCccC
Q 038877           87 TRIRGLPQ-ELKALEKLRYLSLEGTRHL  113 (298)
Q Consensus        87 ~~~~~l~~-~~~~l~~L~~L~l~~~~~~  113 (298)
                      |.++.++. .+..+++|++|++++|...
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            99998875 4888999999999998543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.22  E-value=3.5e-10  Score=97.98  Aligned_cols=212  Identities=14%  Similarity=0.135  Sum_probs=110.7

Q ss_pred             cccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccCCcccccchhhcCCCcccEEecc
Q 038877           30 RLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLE  108 (298)
Q Consensus        30 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~  108 (298)
                      +|+.+.+..+ +..+...+|..+ +|+.+.+..  .+..+ +.+|..|.+|+.+++..+.++.++.......+|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence            5777776554 455555555554 477777664  34444 345666777777777776666666544445667777766


Q ss_pred             CCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhcccccc
Q 038877          109 GTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKL  188 (298)
Q Consensus       109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~  188 (298)
                      .+  +..++...+.++++|+.+.+..+ +..               .-...+.. .+|+.+.+.. ....+..  .....
T Consensus       212 ~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~---------------I~~~aF~~-~~L~~i~lp~-~i~~I~~--~aF~~  269 (401)
T 4fdw_A          212 VT--LKEIGSQAFLKTSQLKTIEIPEN-VST---------------IGQEAFRE-SGITTVKLPN-GVTNIAS--RAFYY  269 (401)
T ss_dssp             TT--CCEECTTTTTTCTTCCCEECCTT-CCE---------------ECTTTTTT-CCCSEEEEET-TCCEECT--TTTTT
T ss_pred             Cc--hheehhhHhhCCCCCCEEecCCC-ccC---------------cccccccc-CCccEEEeCC-CccEECh--hHhhC
Confidence            44  45555555667777777776543 211               01122222 4566666532 2211111  12334


Q ss_pred             ccceeEEEEeccCCC-----CcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh
Q 038877          189 LSITQSVGVYFCQSP-----PLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT  263 (298)
Q Consensus       189 ~~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~  263 (298)
                      +++|+.+.+.++...     .....++.++++|+.+.+.. .+..++...+        .++.+|+.+++..  +++.++
T Consensus       270 c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF--------~~c~~L~~l~lp~--~l~~I~  338 (401)
T 4fdw_A          270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLL--------GGNRKVTQLTIPA--NVTQIN  338 (401)
T ss_dssp             CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTT--------TTCCSCCEEEECT--TCCEEC
T ss_pred             CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhh--------cCCCCccEEEECc--cccEEc
Confidence            455666666554321     12333455666666666652 2333444444        3556666666643  244442


Q ss_pred             --hhhhcCCCcEEEeecC
Q 038877          264 --WLVFAQNLKELRIDSC  279 (298)
Q Consensus       264 --~l~~~~~L~~L~l~~c  279 (298)
                        ....+ +|+.+.+.+.
T Consensus       339 ~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          339 FSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             TTSSSSS-CCCEEEECCS
T ss_pred             HHhCCCC-CCCEEEEcCC
Confidence              12345 6666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.18  E-value=4.7e-10  Score=97.16  Aligned_cols=239  Identities=11%  Similarity=0.106  Sum_probs=162.8

Q ss_pred             cccCCCccEEEeecCCCcCCCC--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCC
Q 038877            3 VEEWEGAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH   80 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~   80 (298)
                      |.++ +|+.+.+..+ +..++.  +.+ .+|+.+.+.. .+..+...+|..|.+|+.+++..+ .+..++...-.+.+|+
T Consensus       132 F~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~  206 (401)
T 4fdw_A          132 FRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIE  206 (401)
T ss_dssp             TTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCS
T ss_pred             cccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccC
Confidence            5564 7889988765 555543  234 4799999886 666777777999999999999988 7887766333368899


Q ss_pred             eeeccCCcccccc-hhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHh
Q 038877           81 HLDLSWTRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKE  159 (298)
Q Consensus        81 ~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (298)
                      .+.+..+ ++.++ ..+..+++|+.+.+..+  +..++...+.+ .+|+.+.+.. .+.               ..-...
T Consensus       207 ~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~-~i~---------------~I~~~a  266 (401)
T 4fdw_A          207 EVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN-GVT---------------NIASRA  266 (401)
T ss_dssp             EEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET-TCC---------------EECTTT
T ss_pred             EEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC-Ccc---------------EEChhH
Confidence            9999854 66555 45788899999999875  56666666766 6899998854 331               122456


Q ss_pred             hcCCCCccEEEEEecCccc--hhhh-ccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhh
Q 038877          160 LLGLKHLNVLSWSLHSSLA--VQKF-LKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEE  236 (298)
Q Consensus       160 l~~l~~L~~l~l~~~~~~~--~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  236 (298)
                      +..|++|+.+.+..+....  ...+ ......+.+|+.+.+.+. .......++.++++|+.+.+..+ +..++...+  
T Consensus       267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF--  342 (401)
T 4fdw_A          267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF--  342 (401)
T ss_dssp             TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT-CCEECTTSS--
T ss_pred             hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC--
Confidence            7788999999988654420  0011 123445677888888743 44555567888899999999554 444655555  


Q ss_pred             hhccccccCCcccEEeccCCCCCCchhh--hhhc-CCCcEEEeec
Q 038877          237 VKKLFRSGFRSLNTVSVDYCQKAKDLTW--LVFA-QNLKELRIDS  278 (298)
Q Consensus       237 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~~-~~L~~L~l~~  278 (298)
                            .++ +|+.+++.++ .+..+..  ...+ ..+..|.+..
T Consensus       343 ------~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          343 ------NNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             ------SSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             ------CCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence                  466 8999999887 4444421  2234 3677777764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.18  E-value=7.1e-11  Score=99.77  Aligned_cols=82  Identities=5%  Similarity=-0.051  Sum_probs=45.0

Q ss_pred             hhcCCCCccEEEEEecCccchhhhcccccccccee-EEEEeccCCCCcccccccccccccceecccCCcceeeecchhhh
Q 038877          159 ELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQ-SVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEV  237 (298)
Q Consensus       159 ~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  237 (298)
                      .|..+++|+.+++..+ ...+..  .....+.+|+ .+.+.+ ........++.++++|+.+++.++.+..++...+   
T Consensus       245 aF~~~~~L~~l~l~~n-i~~I~~--~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF---  317 (329)
T 3sb4_A          245 TFAQKKYLLKIKLPHN-LKTIGQ--RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF---  317 (329)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECT--TTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT---
T ss_pred             hhhCCCCCCEEECCcc-cceehH--HHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhh---
Confidence            4445555555555443 111111  1123344455 555554 2334444567777777777777777777665555   


Q ss_pred             hccccccCCcccEEe
Q 038877          238 KKLFRSGFRSLNTVS  252 (298)
Q Consensus       238 ~~~~~~~~~~L~~L~  252 (298)
                           .++++|+.++
T Consensus       318 -----~~~~~L~~ly  327 (329)
T 3sb4_A          318 -----GNGVPSKLIY  327 (329)
T ss_dssp             -----CTTCCCCEEE
T ss_pred             -----cCCcchhhhc
Confidence                 5677777765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.09  E-value=6e-10  Score=94.72  Aligned_cols=111  Identities=17%  Similarity=0.275  Sum_probs=88.3

Q ss_pred             CCcc-cCCCccEEEeecC-CCcCCCCCCCCCcccEEEecC-CcccccCchHHhcCCCccEEEccCCcCCccC-CccccCc
Q 038877            1 PKVE-EWEGAKRISLMKT-GIQSPSEIPTCPRLVTFLLDG-NWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNL   76 (298)
Q Consensus         1 ~~~~-~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l   76 (298)
                      |..+ .|.. ..++++++ .+..+|.+..+++|++|+|++ |.+..+++..|..+++|++|++++| .+..+ |..|..+
T Consensus         2 p~~c~~C~~-~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l   79 (347)
T 2ifg_A            2 PDACCPHGS-SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFT   79 (347)
T ss_dssp             CSSSCCSSS-SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSC
T ss_pred             CCcCccccC-CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCC
Confidence            4445 5544 45688887 888888887888999999996 8998888766889999999999999 77766 4578899


Q ss_pred             cCCCeeeccCCcccccchhhcCCCcccEEeccCCccC
Q 038877           77 VSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHL  113 (298)
Q Consensus        77 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~  113 (298)
                      ++|++|+|++|.+..+|..+.....|+.|++.+|...
T Consensus        80 ~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           80 PRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence            9999999999999988865444444999999888543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.08  E-value=1.6e-11  Score=105.39  Aligned_cols=157  Identities=15%  Similarity=0.127  Sum_probs=78.0

Q ss_pred             CCccEEEeecCCCcC-----CCCC--CCCCcccEEEecCCccccc-CchHHhcCCCccEEEccCCcCCccC-----Cccc
Q 038877            7 EGAKRISLMKTGIQS-----PSEI--PTCPRLVTFLLDGNWIEEI-TDGFFRSMSSLRVLSLRRNLALSKL-----PSGI   73 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~-----~~~~--~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~-----p~~~   73 (298)
                      +.|+.|++++|.++.     +...  ..+++|++|++++|.++.. .......+++|+.|++++| .++..     ...+
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence            456666666666554     1111  2335666666666665421 1122334456666666666 55421     1111


Q ss_pred             -cCccCCCeeeccCCcccc-----cchhhcCCCcccEEeccCCccCCC----CchhhhcCCCcccEEEeeccCCcccccc
Q 038877           74 -SNLVSLHHLDLSWTRIRG-----LPQELKALEKLRYLSLEGTRHLSI----IPHQLISGFSKLEVLRLLWCGLWSRKEQ  143 (298)
Q Consensus        74 -~~l~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~  143 (298)
                       ...++|++|++++|.++.     ++..+...++|++|++++|...+.    ++. .+...++|+.|++++|.++.    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~----  225 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGD----  225 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCH----
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCH----
Confidence             134556666666666542     334445566666666666632111    112 14455566666666666532    


Q ss_pred             ccccccccCchhHHHhhcCCCCccEEEEEecCc
Q 038877          144 EEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSS  176 (298)
Q Consensus       144 ~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~  176 (298)
                             .+...+...+...+.|+.|++++|..
T Consensus       226 -------~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          226 -------TAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             -------HHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             -------HHHHHHHHHHHhCCCCCEEeccCCCC
Confidence                   00112334444555666666665554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.02  E-value=3.5e-11  Score=103.20  Aligned_cols=194  Identities=16%  Similarity=0.046  Sum_probs=110.3

Q ss_pred             CCcccEEEecCCccc-ccCchHHhcCCCccEEEccCCcCCccC-----Ccccc-CccCCCeeeccCCcccc--cchhhcC
Q 038877           28 CPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALSKL-----PSGIS-NLVSLHHLDLSWTRIRG--LPQELKA   98 (298)
Q Consensus        28 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~-----p~~~~-~l~~L~~L~l~~~~~~~--l~~~~~~   98 (298)
                      ++..+.+++..|-.+ .-....-.-.+.|+.|++++| .++..     ...+. ...+|++|++++|.++.  +......
T Consensus        46 ~~~~~~lnl~~cl~e~~~~~l~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  124 (372)
T 3un9_A           46 LPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV  124 (372)
T ss_dssp             SCHHHHHHHHHHHHHHHTHHHHHHHHTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHH
T ss_pred             CChhhhHHHHHHHHHhcCHHHHHHHHhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHH
Confidence            444555555555222 001111223466778888888 55522     11222 22578888888887762  2233344


Q ss_pred             CCcccEEeccCCccCCCCchhhh-----cCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEe
Q 038877           99 LEKLRYLSLEGTRHLSIIPHQLI-----SGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSL  173 (298)
Q Consensus        99 l~~L~~L~l~~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~  173 (298)
                      +++|+.|++++|.. +......+     ...++|+.|++++|.++.           .+...+...+..+++|+.|++++
T Consensus       125 L~~L~~L~Ls~n~l-~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~-----------~~~~~l~~~L~~~~~L~~L~Ls~  192 (372)
T 3un9_A          125 FLRARKLGLQLNSL-GPEACKDLRDLLLHDQCQITTLRLSNNPLTA-----------AGVAVLMEGLAGNTSVTHLSLLH  192 (372)
T ss_dssp             HHTEEEEECCSSCC-CHHHHHHHHHHHHSTTCCCCEEECCSSCCHH-----------HHHHHHHHHHHTCSSCCEEECTT
T ss_pred             HHhccHhhcCCCCC-CHHHHHHHHHHHHhcCCccceeeCCCCCCCh-----------HHHHHHHHHHhcCCCcCEEeCCC
Confidence            56778888888743 22111112     345778888888887732           11223455667778888888887


Q ss_pred             cCccch--hhhccccccccceeEEEEeccCCCCcccc----cccccccccceecccCCcceeeecch
Q 038877          174 HSSLAV--QKFLKYPKLLSITQSVGVYFCQSPPLNVL----HLAYMENLQELVILNSDLEEMKIDSA  234 (298)
Q Consensus       174 ~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~  234 (298)
                      |.....  ..+.......+.|+.|++++|...+....    .+...+.|++|++++|.+...++..+
T Consensus       193 N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          193 TGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             SSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            775432  22233333445788888888866443322    24456888888888888766444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.96  E-value=1.1e-09  Score=82.81  Aligned_cols=92  Identities=14%  Similarity=0.116  Sum_probs=69.3

Q ss_pred             cceeEEEEeccCCCCcccccccccccccceecccCCcce-eeecchhhhhccccccCCcccEEeccCCCCCCch--hhhh
Q 038877          190 SITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE-MKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDL--TWLV  266 (298)
Q Consensus       190 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l--~~l~  266 (298)
                      -.|+.|++++|...+.....+..+++|+.|++++|...+ .++..+...    ....++|+.|+|++|+.+++-  ..+.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~----~~~~~~L~~L~Ls~C~~ITD~Gl~~L~  136 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL----ENLQKSMLEMEIISCGNVTDKGIIALH  136 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC----HHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc----ccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence            457888888887777777778888999999999997555 666665210    001357999999999889884  4567


Q ss_pred             hcCCCcEEEeecCcccccc
Q 038877          267 FAQNLKELRIDSCYDVEEI  285 (298)
Q Consensus       267 ~~~~L~~L~l~~c~~l~~~  285 (298)
                      .+++|++|+|.+|+.+++.
T Consensus       137 ~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             GCTTCCEEEEESCTTCCCH
T ss_pred             cCCCCCEEECCCCCCCCch
Confidence            7899999999999888764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.90  E-value=5.7e-09  Score=88.64  Aligned_cols=102  Identities=18%  Similarity=0.221  Sum_probs=86.6

Q ss_pred             cEEEecCC-cccccCchHHhcCCCccEEEccC-CcCCccCC-ccccCccCCCeeeccCCcccccc-hhhcCCCcccEEec
Q 038877           32 VTFLLDGN-WIEEITDGFFRSMSSLRVLSLRR-NLALSKLP-SGISNLVSLHHLDLSWTRIRGLP-QELKALEKLRYLSL  107 (298)
Q Consensus        32 ~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l  107 (298)
                      ..++++++ .+..+|.  +..+.+|++|++++ | .+..+| ..|+.+.+|++|+|++|.++.++ ..+..+++|++|++
T Consensus        11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            45788888 8888887  88899999999996 8 888776 57999999999999999999766 46899999999999


Q ss_pred             cCCccCCCCchhhhcCCCcccEEEeeccCCc
Q 038877          108 EGTRHLSIIPHQLISGFSKLEVLRLLWCGLW  138 (298)
Q Consensus       108 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  138 (298)
                      ++| .+..+|...+..++ |+.|++.+|.+.
T Consensus        88 ~~N-~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           88 SFN-ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CSS-CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCC-ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            999 55677776566666 999999999874

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.78  E-value=1.4e-08  Score=86.39  Aligned_cols=165  Identities=16%  Similarity=0.197  Sum_probs=94.2

Q ss_pred             ccCccCCCeeeccCCcc----------cccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccc
Q 038877           73 ISNLVSLHHLDLSWTRI----------RGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKE  142 (298)
Q Consensus        73 ~~~l~~L~~L~l~~~~~----------~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  142 (298)
                      ...+++|+.|.+.....          ..+...+..+|+|+.|.++++... .++.  +. +++|++|.+..+.+     
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~L~~~~l-----  205 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK--KP-RPNLKSLEIISGGL-----  205 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS--CB-CTTCSEEEEECSBC-----
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc--cc-CCCCcEEEEecCCC-----
Confidence            34456677776654321          134456677888888888776222 2333  33 77889998888777     


Q ss_pred             cccccccccCchhHHHhhc--CCCCccEEEEEecCc-----cchhhhccc--cccccceeEEEEeccCCCCcccccc---
Q 038877          143 QEEGSVLYDDAEPLMKELL--GLKHLNVLSWSLHSS-----LAVQKFLKY--PKLLSITQSVGVYFCQSPPLNVLHL---  210 (298)
Q Consensus       143 ~~~~~~~~~~~~~~~~~l~--~l~~L~~l~l~~~~~-----~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l---  210 (298)
                                .......+.  .+++|+.|+++.+..     ..+..+...  ...+++|+.|++.+|...+.....+   
T Consensus       206 ----------~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a  275 (362)
T 2ra8_A          206 ----------PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES  275 (362)
T ss_dssp             ----------CHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC
T ss_pred             ----------ChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC
Confidence                      334444443  678888888864211     011111111  1235678888887775432221222   


Q ss_pred             cccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCc
Q 038877          211 AYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKD  261 (298)
Q Consensus       211 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  261 (298)
                      ..+|.|+.|+++.|.+...++..+..    ....+++|+.|++++| .+++
T Consensus       276 ~~~~~L~~LdLs~n~L~d~G~~~L~~----~L~~l~~L~~L~L~~n-~i~d  321 (362)
T 2ra8_A          276 DILPQLETMDISAGVLTDEGARLLLD----HVDKIKHLKFINMKYN-YLSD  321 (362)
T ss_dssp             SSGGGCSEEECCSSCCBHHHHHHHHT----THHHHTTCSEEECCSB-BCCH
T ss_pred             ccCCCCCEEECCCCCCChHHHHHHHh----hcccCCcceEEECCCC-cCCH
Confidence            24678888888777665533333210    0024678888888877 4655

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.66  E-value=5.6e-08  Score=82.75  Aligned_cols=98  Identities=14%  Similarity=0.182  Sum_probs=49.1

Q ss_pred             CCccEEEeecCCCcC----------CCCCCCCCcccEEEecCCccc----------ccCchHHhcCCCccEEEccCCcCC
Q 038877            7 EGAKRISLMKTGIQS----------PSEIPTCPRLVTFLLDGNWIE----------EITDGFFRSMSSLRVLSLRRNLAL   66 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~----------~~~~~~~~~L~~L~l~~~~~~----------~~~~~~~~~~~~L~~L~l~~~~~~   66 (298)
                      .+++.|.+..+....          ......+++|+.|.+......          .+ ..++..+|+|+.|+++++...
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L-~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDL-SPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBC-HHHHHTCTTCCEEEEECCBTC
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCH-HHHHhcCCCCcEEEEeCCCCc
Confidence            456777777554321          011234667777777543221          12 223556677777777665212


Q ss_pred             ccCCccccCccCCCeeeccCCcccc-cchhh--cCCCcccEEecc
Q 038877           67 SKLPSGISNLVSLHHLDLSWTRIRG-LPQEL--KALEKLRYLSLE  108 (298)
Q Consensus        67 ~~~p~~~~~l~~L~~L~l~~~~~~~-l~~~~--~~l~~L~~L~l~  108 (298)
                       .++. +. +++|++|++..+.+.. ....+  ..+++|++|++.
T Consensus       186 -~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          186 -SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             -BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             -eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence             2332 22 5666666666555441 11122  245666666653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.63  E-value=1e-06  Score=76.04  Aligned_cols=256  Identities=10%  Similarity=0.061  Sum_probs=128.5

Q ss_pred             cccCC-CccEEEeecCCCcCCC--CCCCCCcccEEEecCCc---ccccCchHHhcCCCccEEEccCCcCCccCC-ccccC
Q 038877            3 VEEWE-GAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNW---IEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISN   75 (298)
Q Consensus         3 ~~~~~-~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~   75 (298)
                      |.++. .|+.+.+-.+ ++.+.  .+.+|.+|+.+.+..+.   +..+...+|..+.+|+.+.+..+  +..++ .++..
T Consensus        59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~  135 (394)
T 4gt6_A           59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHH  135 (394)
T ss_dssp             TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTT
T ss_pred             ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhh
Confidence            55553 4777777543 44443  33677778887776542   44555555666777766655443  33332 34555


Q ss_pred             ccCCCeeeccCCcccccc-hhhcCCCcccEEeccCCccCCCCc----------------------hhhhcCCCcccEEEe
Q 038877           76 LVSLHHLDLSWTRIRGLP-QELKALEKLRYLSLEGTRHLSIIP----------------------HQLISGFSKLEVLRL  132 (298)
Q Consensus        76 l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~----------------------~~~~~~l~~L~~L~l  132 (298)
                      +.+|+.+.+..+ +..+. ..+..+.+|+.+.+..+  +..+.                      ...+..+.++.....
T Consensus       136 c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~  212 (394)
T 4gt6_A          136 CEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITS  212 (394)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEE
T ss_pred             hcccccccccce-eeeecccceecccccccccccce--eeEeccccccccceeEEEECCcccccccchhhhccccceecc
Confidence            666666666432 12111 23444445555444332  22222                      222344444444433


Q ss_pred             eccCCcccccc-----c----------------cccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccc
Q 038877          133 LWCGLWSRKEQ-----E----------------EGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSI  191 (298)
Q Consensus       133 ~~~~~~~~~~~-----~----------------~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~  191 (298)
                      ...........     .                ...+.......-...+..+..|+.+.+..... .+..  .....+..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~--~aF~~c~~  289 (394)
T 4gt6_A          213 DSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGT--GAFMNCPA  289 (394)
T ss_dssp             CCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECT--TTTTTCTT
T ss_pred             cccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc-eecC--cccccccc
Confidence            22211100000     0                00000000000123455666677666643211 1111  12234566


Q ss_pred             eeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh--hhhhcC
Q 038877          192 TQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT--WLVFAQ  269 (298)
Q Consensus       192 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~~~  269 (298)
                      |+.+.+... .......++.++++|+++.|..+ +..++...+        .++.+|+.+.+..  .++.++  ....|+
T Consensus       290 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF--------~~C~~L~~i~ip~--sv~~I~~~aF~~C~  357 (394)
T 4gt6_A          290 LQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAF--------AGCEQLERIAIPS--SVTKIPESAFSNCT  357 (394)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTT--------TTCTTCCEEEECT--TCCBCCGGGGTTCT
T ss_pred             cccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHh--------hCCCCCCEEEECc--ccCEEhHhHhhCCC
Confidence            677766432 23344456778888888888653 333555555        5788899998864  466653  346788


Q ss_pred             CCcEEEeecC
Q 038877          270 NLKELRIDSC  279 (298)
Q Consensus       270 ~L~~L~l~~c  279 (298)
                      +|+.+.+.+.
T Consensus       358 ~L~~i~~~~~  367 (394)
T 4gt6_A          358 ALNNIEYSGS  367 (394)
T ss_dssp             TCCEEEESSC
T ss_pred             CCCEEEECCc
Confidence            9999988764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.59  E-value=3.1e-07  Score=79.33  Aligned_cols=216  Identities=15%  Similarity=0.141  Sum_probs=139.8

Q ss_pred             CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccCCcccccchhhcCCCcc
Q 038877           24 EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSWTRIRGLPQELKALEKL  102 (298)
Q Consensus        24 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L  102 (298)
                      .+..|.+|+.+.+..+ +..+...+|..+.+|+.+++..+  +..+ ..++.++..|+.+.+..+.. .+........+|
T Consensus       157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~~~l  232 (394)
T 4fs7_A          157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLY-YLGDFALSKTGV  232 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCC-EECTTTTTTCCC
T ss_pred             hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCce-EeehhhcccCCC
Confidence            3478899999998755 34566667889999999988765  4444 34688888999888776432 233344455678


Q ss_pred             cEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhh
Q 038877          103 RYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKF  182 (298)
Q Consensus       103 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~  182 (298)
                      +.+.+...  ...+....+.++.+++.+.+..+...                .....+..+..++.+.......   .  
T Consensus       233 ~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~----------------i~~~~F~~~~~l~~~~~~~~~i---~--  289 (394)
T 4fs7_A          233 KNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLR----------------IGGSLFYNCSGLKKVIYGSVIV---P--  289 (394)
T ss_dssp             CEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCE----------------ECSCTTTTCTTCCEEEECSSEE---C--
T ss_pred             ceEEECCC--ceecccccccccccceeEEcCCCcce----------------eeccccccccccceeccCceee---c--
Confidence            88887654  34555555788889999888765331                1223455666777665543211   1  


Q ss_pred             ccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCch
Q 038877          183 LKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDL  262 (298)
Q Consensus       183 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l  262 (298)
                      ......+..|+.+.+... .......++.++++|+++++..+ +..++...+        .++.+|+.+++...  ++.+
T Consensus       290 ~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF--------~~c~~L~~i~lp~~--l~~I  357 (394)
T 4fs7_A          290 EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSF--------RGCTSLSNINFPLS--LRKI  357 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTT--------TTCTTCCEECCCTT--CCEE
T ss_pred             cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhc--------cCCCCCCEEEECcc--ccEe
Confidence            112334566777777543 23344456778888888888643 444555555        56788888888653  6665


Q ss_pred             h--hhhhcCCCcEEEeec
Q 038877          263 T--WLVFAQNLKELRIDS  278 (298)
Q Consensus       263 ~--~l~~~~~L~~L~l~~  278 (298)
                      +  ....|++|+.+.+..
T Consensus       358 ~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          358 GANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CTTTBTTCTTCCEEEEEG
T ss_pred             hHHHhhCCCCCCEEEECC
Confidence            3  346688888888864

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.55  E-value=4.6e-08  Score=75.30  Aligned_cols=111  Identities=14%  Similarity=0.105  Sum_probs=80.9

Q ss_pred             CCCCcccEEEecCC-cccc----cCchHHhcCCCccEEEccCCcCCcc-----CCccccCccCCCeeeccCCcccc----
Q 038877           26 PTCPRLVTFLLDGN-WIEE----ITDGFFRSMSSLRVLSLRRNLALSK-----LPSGISNLVSLHHLDLSWTRIRG----   91 (298)
Q Consensus        26 ~~~~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~----   91 (298)
                      ...+.|++|++++| .++.    .....+...++|++|++++| .+..     +...+...++|++|++++|.+..    
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            67888999999998 8862    11223666788999999999 6652     34455666789999999998872    


Q ss_pred             -cchhhcCCCcccEEec--cCCccCCC----CchhhhcCCCcccEEEeeccCCc
Q 038877           92 -LPQELKALEKLRYLSL--EGTRHLSI----IPHQLISGFSKLEVLRLLWCGLW  138 (298)
Q Consensus        92 -l~~~~~~l~~L~~L~l--~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~  138 (298)
                       +...+...++|++|++  ++|.....    +.. .+...++|++|++++|.+.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence             4566778888999999  66743322    222 2556788999999999873

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.54  E-value=2e-06  Score=74.25  Aligned_cols=196  Identities=14%  Similarity=0.059  Sum_probs=105.6

Q ss_pred             ccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccCCcccccc-hhhcCCCcccEEeccCCccCCCCchhh
Q 038877           43 EITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSWTRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQL  120 (298)
Q Consensus        43 ~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~  120 (298)
                      .+...+|..+.+|+.+.+..+  +..+ ...|..+.+|+.+.+..+ ++.++ ..+..+..|+.+.+..+  ...+... 
T Consensus       152 ~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~-  225 (394)
T 4fs7_A          152 VIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS--LYYLGDF-  225 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTT-
T ss_pred             ccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC--ceEeehh-
Confidence            344445777888888888665  2333 346777788888877664 34333 34667777777776554  2222222 


Q ss_pred             hcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEecc
Q 038877          121 ISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFC  200 (298)
Q Consensus       121 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  200 (298)
                      .....+|+.+.+.....                ..-...+..+..++.+.+..+... +.  ......+..++.+.....
T Consensus       226 ~~~~~~l~~i~ip~~~~----------------~i~~~~f~~~~~l~~~~~~~~~~~-i~--~~~F~~~~~l~~~~~~~~  286 (394)
T 4fs7_A          226 ALSKTGVKNIIIPDSFT----------------ELGKSVFYGCTDLESISIQNNKLR-IG--GSLFYNCSGLKKVIYGSV  286 (394)
T ss_dssp             TTTTCCCCEEEECTTCC----------------EECSSTTTTCSSCCEEEECCTTCE-EC--SCTTTTCTTCCEEEECSS
T ss_pred             hcccCCCceEEECCCce----------------ecccccccccccceeEEcCCCcce-ee--ccccccccccceeccCce
Confidence            34455677777654321                011234456677777777543221 11  111223344455544332


Q ss_pred             CCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh--hhhhcCCCcEEEee
Q 038877          201 QSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT--WLVFAQNLKELRID  277 (298)
Q Consensus       201 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~~~~L~~L~l~  277 (298)
                      .   ....++..+.+|+.+.+.++ +..++...+        .++.+|+.+++.+  .++.++  ....|.+|+.+.+.
T Consensus       287 ~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF--------~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp  351 (394)
T 4fs7_A          287 I---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAF--------ESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFP  351 (394)
T ss_dssp             E---ECTTTTTTCTTCCEEEECTT-CCEECTTTT--------TTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCC
T ss_pred             e---eccccccccccccccccccc-cceechhhh--------cCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEEC
Confidence            1   22234566777777777543 333444444        4667788887754  355543  23456666666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.48  E-value=6.6e-06  Score=70.99  Aligned_cols=106  Identities=13%  Similarity=0.181  Sum_probs=78.9

Q ss_pred             CCC-CcccEEEecCCcccccCchHHhcCCCccEEEccCCc--CCccCC-ccccCccCCCeeeccCCcccccc-hhhcCCC
Q 038877           26 PTC-PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNL--ALSKLP-SGISNLVSLHHLDLSWTRIRGLP-QELKALE  100 (298)
Q Consensus        26 ~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~p-~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~  100 (298)
                      ..+ ..|+.+.+-.. +..+...+|..|.+|+.+.+..+.  .+..+. .+|..+.+|+.+.+..+ ++.++ ..+..+.
T Consensus        60 ~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~  137 (394)
T 4gt6_A           60 CNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCE  137 (394)
T ss_dssp             TTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCT
T ss_pred             cCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhc
Confidence            456 45999998754 667777789999999999998761  244553 47888999999887654 44444 4578899


Q ss_pred             cccEEeccCCccCCCCchhhhcCCCcccEEEeecc
Q 038877          101 KLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWC  135 (298)
Q Consensus       101 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  135 (298)
                      +|+.+.+...  ...+....+..+.+|+.+.+..+
T Consensus       138 ~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~  170 (394)
T 4gt6_A          138 ELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS  170 (394)
T ss_dssp             TCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred             ccccccccce--eeeecccceecccccccccccce
Confidence            9999999764  45666666888899998888653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.42  E-value=1.6e-07  Score=72.17  Aligned_cols=120  Identities=13%  Similarity=0.102  Sum_probs=86.3

Q ss_pred             hHHhcCCCccEEEccCCcCCc-----cCCccccCccCCCeeeccCCccc-----ccchhhcCCCcccEEeccCCccCCC-
Q 038877           47 GFFRSMSSLRVLSLRRNLALS-----KLPSGISNLVSLHHLDLSWTRIR-----GLPQELKALEKLRYLSLEGTRHLSI-  115 (298)
Q Consensus        47 ~~~~~~~~L~~L~l~~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~-  115 (298)
                      ..+...+.|++|++++|..+.     .+...+...++|++|++++|.+.     .+...+...++|++|++++|..... 
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            346778889999998873343     23445666788999999999877     2445566778899999998844322 


Q ss_pred             ---CchhhhcCCCcccEEEe--eccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccc
Q 038877          116 ---IPHQLISGFSKLEVLRL--LWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLA  178 (298)
Q Consensus       116 ---~~~~~~~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~  178 (298)
                         +.. .+...++|++|++  ++|.+..           .+...+...+...+.|+.|+++++....
T Consensus       110 ~~~l~~-~L~~n~~L~~L~L~~~~N~i~~-----------~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          110 ILALVE-ALQSNTSLIELRIDNQSQPLGN-----------NVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHH-GGGGCSSCCEEECCCCSSCCCH-----------HHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHH-HHHhCCCceEEEecCCCCCCCH-----------HHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence               223 2566778999999  7788743           2244588888888899999999887653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.30  E-value=7.4e-07  Score=67.24  Aligned_cols=100  Identities=12%  Similarity=0.080  Sum_probs=60.7

Q ss_pred             cccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCc
Q 038877          126 KLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPL  205 (298)
Q Consensus       126 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  205 (298)
                      +|+.|++++|.+               ...-...+..+++|+.|++++|...+...                        
T Consensus        62 ~L~~LDLs~~~I---------------td~GL~~L~~~~~L~~L~L~~C~~ItD~g------------------------  102 (176)
T 3e4g_A           62 KIQAIDATDSCI---------------MSIGFDHMEGLQYVEKIRLCKCHYIEDGC------------------------  102 (176)
T ss_dssp             CEEEEEEESCCC---------------CGGGGGGGTTCSCCCEEEEESCTTCCHHH------------------------
T ss_pred             eEeEEeCcCCCc---------------cHHHHHHhcCCCCCCEEEeCCCCccCHHH------------------------
Confidence            577777777765               23334445566666666666654332222                        


Q ss_pred             ccccccc----cccccceecccCCcce-eeecchhhhhccccccCCcccEEeccCCCCCCchh----hh-hhcCCCcE
Q 038877          206 NVLHLAY----MENLQELVILNSDLEE-MKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT----WL-VFAQNLKE  273 (298)
Q Consensus       206 ~~~~l~~----l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~----~l-~~~~~L~~  273 (298)
                       ...+..    .++|++|++++|...+ .++..+        ..+++|++|++++|+.+++..    .+ ..+|+++.
T Consensus       103 -L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L--------~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          103 -LERLSQLENLQKSMLEMEIISCGNVTDKGIIAL--------HHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             -HHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG--------GGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred             -HHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH--------hcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence             222332    2467777777776444 555555        468899999999999898853    12 45777653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.05  E-value=0.00033  Score=59.87  Aligned_cols=78  Identities=15%  Similarity=0.152  Sum_probs=47.2

Q ss_pred             ccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh--hhh
Q 038877          189 LSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT--WLV  266 (298)
Q Consensus       189 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~  266 (298)
                      +..++.+.+... .......++.++++|+.+.+.++.+..++...+        .++.+|+.+++..  .++.++  ...
T Consensus       262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF--------~~c~~L~~i~lp~--~l~~I~~~aF~  330 (379)
T 4h09_A          262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVF--------MDCVKLSSVTLPT--ALKTIQVYAFK  330 (379)
T ss_dssp             CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTT--------TTCTTCCEEECCT--TCCEECTTTTT
T ss_pred             eehhcccccccc-ceeccccccccccccccccccccccceehhhhh--------cCCCCCCEEEcCc--cccEEHHHHhh
Confidence            444555555432 222333456677888888887776666655555        5678888888864  355553  235


Q ss_pred             hcCCCcEEEee
Q 038877          267 FAQNLKELRID  277 (298)
Q Consensus       267 ~~~~L~~L~l~  277 (298)
                      .|.+|+.+.+.
T Consensus       331 ~C~~L~~i~ip  341 (379)
T 4h09_A          331 NCKALSTISYP  341 (379)
T ss_dssp             TCTTCCCCCCC
T ss_pred             CCCCCCEEEEC
Confidence            56777776664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.04  E-value=1.1e-05  Score=65.43  Aligned_cols=104  Identities=25%  Similarity=0.248  Sum_probs=69.4

Q ss_pred             CCCCcccE--EEecCCcccccC---chHHhcCCCccEEEccCCcCCccC---CccccCccCCCeeeccCCcccccchhhc
Q 038877           26 PTCPRLVT--FLLDGNWIEEIT---DGFFRSMSSLRVLSLRRNLALSKL---PSGISNLVSLHHLDLSWTRIRGLPQELK   97 (298)
Q Consensus        26 ~~~~~L~~--L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~---p~~~~~l~~L~~L~l~~~~~~~l~~~~~   97 (298)
                      ...+.|..  ++++.|....++   ......+++|+.|++++| .+..+   |..+..+++|+.|+|++|.+..+. .+.
T Consensus       138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~  215 (267)
T 3rw6_A          138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELD  215 (267)
T ss_dssp             GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGG
T ss_pred             CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCch-hhh
Confidence            33445555  555666433222   222467889999999999 77654   455667899999999999888663 233


Q ss_pred             CCC--cccEEeccCCccCCCCc------hhhhcCCCcccEEE
Q 038877           98 ALE--KLRYLSLEGTRHLSIIP------HQLISGFSKLEVLR  131 (298)
Q Consensus        98 ~l~--~L~~L~l~~~~~~~~~~------~~~~~~l~~L~~L~  131 (298)
                      .+.  +|+.|++.+|...+.+|      ..++..+|+|+.|+
T Consensus       216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            334  89999999886555444      12467888888887

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.01  E-value=6.9e-06  Score=66.52  Aligned_cols=112  Identities=24%  Similarity=0.186  Sum_probs=71.6

Q ss_pred             HhcCCCccE--EEccCCcCCccCCc----cccCccCCCeeeccCCcccccc---hhhcCCCcccEEeccCCccCCCCch-
Q 038877           49 FRSMSSLRV--LSLRRNLALSKLPS----GISNLVSLHHLDLSWTRIRGLP---QELKALEKLRYLSLEGTRHLSIIPH-  118 (298)
Q Consensus        49 ~~~~~~L~~--L~l~~~~~~~~~p~----~~~~l~~L~~L~l~~~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~-  118 (298)
                      +...+.|..  ++++.| ....++.    ...++++|+.|+|++|.+..++   ..+..+++|+.|++++|.. ..+.. 
T Consensus       137 l~~dp~L~~~~l~l~~N-~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~~~~~l  214 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLN-RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSEREL  214 (267)
T ss_dssp             GGGCHHHHHTTCCCCTT-SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC-CSGGGG
T ss_pred             cCCCcchhhcCccccCC-HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc-CCchhh
Confidence            444455554  556666 4444332    2246789999999999888544   5677899999999999854 44322 


Q ss_pred             hhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEE
Q 038877          119 QLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSW  171 (298)
Q Consensus       119 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l  171 (298)
                      ..+..+ +|+.|++.+|.+.....        .........+..+++|+.|+-
T Consensus       215 ~~l~~l-~L~~L~L~~Npl~~~~~--------~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          215 DKIKGL-KLEELWLDGNSLCDTFR--------DQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             GGGTTS-CCSEEECTTSTTGGGCS--------SHHHHHHHHHHHCTTCCEESS
T ss_pred             hhcccC-CcceEEccCCcCccccC--------cchhHHHHHHHHCcccCeECC
Confidence            113344 89999999999843100        001234466667788888764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.60  E-value=0.00025  Score=60.58  Aligned_cols=103  Identities=15%  Similarity=0.278  Sum_probs=50.4

Q ss_pred             CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccCCcccccc-hhhcCCCccc
Q 038877           26 PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSWTRIRGLP-QELKALEKLR  103 (298)
Q Consensus        26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~  103 (298)
                      ..+..|+.+.+..+ +..+...++..+..|+.+.+..+  +..+ ..++.++.+|+.+.+..+ +..++ ..+..+++|+
T Consensus       214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred             ccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence            44555555555433 22333333555566666655443  2333 224555555666555432 33332 2345555666


Q ss_pred             EEeccCCccCCCCchhhhcCCCcccEEEee
Q 038877          104 YLSLEGTRHLSIIPHQLISGFSKLEVLRLL  133 (298)
Q Consensus       104 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  133 (298)
                      .+.+.++ .+..++...+.++.+|+.+.+.
T Consensus       290 ~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          290 KVVMDNS-AIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             EEEECCT-TCCEECTTTTTTCTTCCEEECC
T ss_pred             ccccccc-ccceehhhhhcCCCCCCEEEcC
Confidence            6655543 2344444445566666666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.19  E-value=0.00033  Score=53.72  Aligned_cols=110  Identities=14%  Similarity=0.080  Sum_probs=72.1

Q ss_pred             CCCCcccEEEecCC-cccc----cCchHHhcCCCccEEEccCCcCCc-----cCCccccCccCCCeeeccCCccc-----
Q 038877           26 PTCPRLVTFLLDGN-WIEE----ITDGFFRSMSSLRVLSLRRNLALS-----KLPSGISNLVSLHHLDLSWTRIR-----   90 (298)
Q Consensus        26 ~~~~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~-----   90 (298)
                      ..-+.|++|+++++ .+++    ....++..-..|+.|++++| .+.     .+...+..-..|++|+|++|.+.     
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            45677888888875 7762    11223666778888888888 665     23344555577889999888877     


Q ss_pred             ccchhhcCCCcccEEeccCCcc--CCC-----CchhhhcCCCcccEEEeeccCC
Q 038877           91 GLPQELKALEKLRYLSLEGTRH--LSI-----IPHQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus        91 ~l~~~~~~l~~L~~L~l~~~~~--~~~-----~~~~~~~~l~~L~~L~l~~~~~  137 (298)
                      .+.+.+..-+.|+.|+++++..  ++.     +.. .+..=+.|+.|+++.+..
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCc
Confidence            2345566667799999876521  221     112 244556788888887765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.79  E-value=0.0024  Score=48.95  Aligned_cols=117  Identities=15%  Similarity=0.083  Sum_probs=80.6

Q ss_pred             hHHhcCCCccEEEccCCcCCc-----cCCccccCccCCCeeeccCCccc-----ccchhhcCCCcccEEeccCCccCCC-
Q 038877           47 GFFRSMSSLRVLSLRRNLALS-----KLPSGISNLVSLHHLDLSWTRIR-----GLPQELKALEKLRYLSLEGTRHLSI-  115 (298)
Q Consensus        47 ~~~~~~~~L~~L~l~~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~-  115 (298)
                      .....-+.|+.|+++++..+.     .+..++..-..|+.|+|++|.+.     .+.+.+..-+.|+.|+++.|..... 
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            335667889999999852554     23455666688999999999887     4556677788999999999954322 


Q ss_pred             ---CchhhhcCCCcccEEEeeccC---CccccccccccccccCchhHHHhhcCCCCccEEEEEecC
Q 038877          116 ---IPHQLISGFSKLEVLRLLWCG---LWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHS  175 (298)
Q Consensus       116 ---~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~  175 (298)
                         +.. .+..-+.|+.|+++++.   +..           .....+...+..-+.|+.++++.+.
T Consensus       115 a~ala~-aL~~N~tL~~L~L~n~~~~~ig~-----------~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          115 LARLLR-STLVTQSIVEFKADNQRQSVLGN-----------QVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHH-HTTTTCCCSEEECCCCSSCCCCH-----------HHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHH-HHhhCCceeEEECCCCcCcCcCH-----------HHHHHHHHHHHhCCCcCeEeccCCC
Confidence               112 14455669999998653   321           1123466778778889999887554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.44  E-value=0.0087  Score=42.60  Aligned_cols=52  Identities=19%  Similarity=0.307  Sum_probs=31.7

Q ss_pred             EEEeecCCCc--CCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCC
Q 038877           11 RISLMKTGIQ--SPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRN   63 (298)
Q Consensus        11 ~L~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   63 (298)
                      .++.+++.++  .+|.. -.++|++|+|++|.+..++..+|..+++|++|+|++|
T Consensus        12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            5666666665  55522 1235666677777666666655666666666666666

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.59  E-value=0.02  Score=40.67  Aligned_cols=54  Identities=20%  Similarity=0.268  Sum_probs=27.9

Q ss_pred             eeeccCCccc--ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCC
Q 038877           81 HLDLSWTRIR--GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus        81 ~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  137 (298)
                      .++.+++.++  .+|..+  -++|++|++++| .+..++.+.+..+++|+.|++.+|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence            3444444444  444321  124555666555 34555555556666666666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	298
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 7e-07
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 28  CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWT 87
              L    L  N I +I+     S++ L+ L    N  +S + S ++NL +++ L     
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNK-VSDVSS-LANLTNINWLSAGHN 361

Query: 88  RIRGLPQELKALEKLRYLSLEG 109
           +I  L   L  L ++  L L  
Sbjct: 362 QISDLT-PLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 7e-06
 Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 8/123 (6%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
             + L    I + S +     L    L+ N +E+I+     ++ +L  L+L  N  +S +
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFN-NISDI 322

Query: 70  PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEV 129
              +S+L  L  L  +  ++  +   L  L  + +LS    +   + P   ++  +++  
Sbjct: 323 SP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP---LANLTRITQ 377

Query: 130 LRL 132
           L L
Sbjct: 378 LGL 380

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.4 bits (111), Expect = 8e-07
 Identities = 18/79 (22%), Positives = 30/79 (37%)

Query: 39  NWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKA 98
                   G      +L  L LR N     LP G++ L  LH L++S+  + G   +   
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289

Query: 99  LEKLRYLSLEGTRHLSIIP 117
           L++    +    + L   P
Sbjct: 290 LQRFDVSAYANNKCLCGSP 308

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 8/79 (10%)

Query: 25  IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDL 84
               P L    +  N + E+          L  L    N  L+++P    NL     L +
Sbjct: 280 CDLPPSLEELNVSNNKLIELPALP----PRLERLIASFNH-LAEVPELPQNL---KQLHV 331

Query: 85  SWTRIRGLPQELKALEKLR 103
            +  +R  P   +++E LR
Sbjct: 332 EYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 12/94 (12%)

Query: 39  NWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKA 98
           N              SL  L++  N  L +LP+       L  L  S+  +  +P+  + 
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNN-KLIELPALPPR---LERLIASFNHLAEVPELPQ- 324

Query: 99  LEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
              L+ L +E    L   P         +E LR+
Sbjct: 325 --NLKQLHVEYNP-LREFP----DIPESVEDLRM 351

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.6 bits (96), Expect = 5e-05
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 2/87 (2%)

Query: 53  SSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGL-PQELKALEKLRYLSLEGTR 111
               +L L+ N           NL +LH L L   +I  + P     L KL  L L   +
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 112 HLSIIPHQLISGFSKLEVLRLLWCGLW 138
            L  +P ++     +L V       + 
Sbjct: 91  -LKELPEKMPKTLQELRVHENEITKVR 116

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 21/169 (12%), Positives = 52/169 (30%), Gaps = 21/169 (12%)

Query: 74  SNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLL 133
           +N V    LDL   +I  +      L++   +         +          +L+ L + 
Sbjct: 15  TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF---PLLRRLKTLLVN 71

Query: 134 WCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQ 193
              +                   + + L      +L+ +    L     L   K L+   
Sbjct: 72  NNRICRI-------------GEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 118

Query: 194 SVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFR 242
            +           +  +  +  ++ L     D +++K+   +E +K+F+
Sbjct: 119 ILRNPVTNKKHYRLYVIYKVPQVRVL-----DFQKVKLKERQEAEKMFK 162

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 22/147 (14%), Positives = 45/147 (30%), Gaps = 19/147 (12%)

Query: 36  LDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQE 95
           L    IE+     + +    R L LR    +  + +  + L     +D S   IR L   
Sbjct: 3   LTAELIEQAAQ--YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKLDGF 59

Query: 96  LKALEKLRYLSLEGTRHLSIIPHQL---------------ISGFSKLEVLRLLWCGLWSR 140
              L +L+ L +   R   I                    +     L+ L  L    +  
Sbjct: 60  -PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 118

Query: 141 KEQEEGSVLYDDAEPLMKELLGLKHLN 167
             +   +        ++ ++  ++ L+
Sbjct: 119 ILRNPVTNKKHYRLYVIYKVPQVRVLD 145

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 10/106 (9%)

Query: 38  GNWIEEITDGFFRSMSSLRVLSLRRN----LALSKLPSGISNLVSLHHLDLSWTRI--RG 91
              + E+  G  +  S LRVL L        + S L + +    SL  LDLS   +   G
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 92  LPQELKALE----KLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLL 133
           + Q ++++      L  L L        +  +L +       LR++
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 15/71 (21%), Positives = 25/71 (35%)

Query: 39  NWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKA 98
           N ++ +  G       L  LSL  N         ++ L +L  L L    +  +P+    
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193

Query: 99  LEKLRYLSLEG 109
              L +  L G
Sbjct: 194 SHLLPFAFLHG 204

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 41  IEEITDGFFRSMSSLRVLSLRRNL-ALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKAL 99
           I    +      +    + L   +  + K+ + +S L +  HL LS   I  +   L  +
Sbjct: 11  IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGM 69

Query: 100 EKLRYL 105
           E LR L
Sbjct: 70  ENLRIL 75

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 73  ISNLVSLHHLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIP 117
                    LD+S TRI  LP   L+ L+KLR  S     +L  +P
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST---YNLKKLP 239

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 24/99 (24%)

Query: 56  RVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKL------------- 102
           RVL L     L+ L   +  L+ + HLDLS  R+R LP  L AL  L             
Sbjct: 1   RVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 103 ---------RYLSLEGTRHLSIIPHQLISGFSKLEVLRL 132
                    + L L   R       Q +    +L +L L
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 97

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.3 bits (78), Expect = 0.004
 Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 7/125 (5%)

Query: 10  KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69
           + + L    +     +     +    L  N +  +            + +        + 
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA---LEN 57

Query: 70  PSGISNLVSLHHLDLSWTRIRGLP--QELKALEKLRYLSLEGTR--HLSIIPHQLISGFS 125
             G++NL  L  L L   R++     Q L +  +L  L+L+G        I  +L     
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 126 KLEVL 130
            +  +
Sbjct: 118 SVSSI 122

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 37  DGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQEL 96
                +        ++S L  L    N  +S +   +++L +L  + L   +I  +   L
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNNQISDVS-PL 213

Query: 97  KALEKLRYLSLE 108
                L  ++L 
Sbjct: 214 ANTSNLFIVTLT 225

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	298
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.88
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.86
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.85
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.82
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.8
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.8
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.78
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.78
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.76
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.62
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.62
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.62
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.6
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.53
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.41
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.36
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.35
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.33
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.29
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.27
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.27
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.12
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.04
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.22
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.0
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.0
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.82
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.56
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.5

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=3.1e-21  Score=164.70  Aligned_cols=265  Identities=17%  Similarity=0.222  Sum_probs=148.5

Q ss_pred             CCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeecc
Q 038877            6 WEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLS   85 (298)
Q Consensus         6 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~   85 (298)
                      +.+|+.|+++++.+++++++..+++|++|++++|.++++++  ++.+++|++|++++| .+..+++ ++.+++|+.|++.
T Consensus        43 l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n-~i~~i~~-l~~l~~L~~L~~~  118 (384)
T d2omza2          43 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLF  118 (384)
T ss_dssp             HTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECC
T ss_pred             hCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccc-ccccccc-ccccccccccccc
Confidence            45667777777777666666667777777777776666654  666777777777777 5655543 5666666666665


Q ss_pred             CCccccc----------------------------------------------------------------chhhcCCCc
Q 038877           86 WTRIRGL----------------------------------------------------------------PQELKALEK  101 (298)
Q Consensus        86 ~~~~~~l----------------------------------------------------------------~~~~~~l~~  101 (298)
                      ++.+..+                                                                ......+++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  198 (384)
T d2omza2         119 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN  198 (384)
T ss_dssp             SSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccc
Confidence            5433211                                                                012334455


Q ss_pred             ccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccc------ccccccccCchhHHHhhcCCCCccEEEEEecC
Q 038877          102 LRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ------EEGSVLYDDAEPLMKELLGLKHLNVLSWSLHS  175 (298)
Q Consensus       102 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~  175 (298)
                      ++.++++++. +..++.  ...+++|+.|++++|.+.....-      ....+....- .....+..+++|+.++++.+.
T Consensus       199 ~~~l~l~~n~-i~~~~~--~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~L~~L~l~~~~  274 (384)
T d2omza2         199 LESLIATNNQ-ISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI-SNLAPLSGLTKLTELKLGANQ  274 (384)
T ss_dssp             CSEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSSC
T ss_pred             cceeeccCCc-cCCCCc--ccccCCCCEEECCCCCCCCcchhhcccccchhccccCcc-CCCCcccccccCCEeeccCcc
Confidence            6666666552 333333  34555666666666655320000      0000000000 001123444455555554443


Q ss_pred             ccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccC
Q 038877          176 SLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDY  255 (298)
Q Consensus       176 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  255 (298)
                      ......+.    ....++.+.+..+....  ...+..++.++.|++++|++.++.  .+        ..+++|+.|++++
T Consensus       275 l~~~~~~~----~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l--------~~l~~L~~L~L~~  338 (384)
T d2omza2         275 ISNISPLA----GLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PV--------SSLTKLQRLFFAN  338 (384)
T ss_dssp             CCCCGGGT----TCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GG--------GGCTTCCEEECCS
T ss_pred             cCCCCccc----ccccccccccccccccc--ccccchhcccCeEECCCCCCCCCc--cc--------ccCCCCCEEECCC
Confidence            32222111    12333444444443222  223556677888888888776532  13        5689999999999


Q ss_pred             CCCCCchhhhhhcCCCcEEEeecCcccccccccCccccccc
Q 038877          256 CQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSDISE  296 (298)
Q Consensus       256 c~~l~~l~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~  296 (298)
                      | .+++++.+..+++|++|++.+| .+++++...+...+..
T Consensus       339 n-~l~~l~~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~  377 (384)
T d2omza2         339 N-KVSDVSSLANLTNINWLSAGHN-QISDLTPLANLTRITQ  377 (384)
T ss_dssp             S-CCCCCGGGGGCTTCCEEECCSS-CCCBCGGGTTCTTCSE
T ss_pred             C-CCCCChhHcCCCCCCEEECCCC-cCCCChhhccCCCCCE
Confidence            9 7888888888999999999887 6777776655555443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=1.1e-20  Score=156.47  Aligned_cols=250  Identities=18%  Similarity=0.227  Sum_probs=150.4

Q ss_pred             CcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCC
Q 038877            2 KVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLH   80 (298)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~   80 (298)
                      ..++| ..+.++.++..++.+|.-. .+++++|++++|.++.+++..|..+++|++|++++| .+..+ |..|..+++|+
T Consensus         6 ~~c~c-~~~~~~C~~~~L~~lP~~l-~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n-~~~~i~~~~f~~l~~L~   82 (305)
T d1xkua_           6 FRCQC-HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLE   82 (305)
T ss_dssp             TTCEE-ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCC
T ss_pred             CCCEe-cCCEEEecCCCCCccCCCC-CCCCCEEECcCCcCCCcChhHhhccccccccccccc-cccccchhhhhCCCccC
Confidence            34443 5667777777777776521 367888888888888777655788888888888888 66655 55678888888


Q ss_pred             eeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh
Q 038877           81 HLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL  160 (298)
Q Consensus        81 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  160 (298)
                      +|++++|.++.+|..+  ...+..++..++ ....++...+.....++.+....+....             .......+
T Consensus        83 ~L~l~~n~l~~l~~~~--~~~l~~L~~~~n-~l~~l~~~~~~~~~~~~~l~~~~n~~~~-------------~~~~~~~~  146 (305)
T d1xkua_          83 RLYLSKNQLKELPEKM--PKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKS-------------SGIENGAF  146 (305)
T ss_dssp             EEECCSSCCSBCCSSC--CTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCG-------------GGBCTTGG
T ss_pred             EecccCCccCcCccch--hhhhhhhhcccc-chhhhhhhhhhccccccccccccccccc-------------cCCCcccc
Confidence            8888888887776543  346777777766 3444554445666667777766654422             22223345


Q ss_pred             cCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhcc
Q 038877          161 LGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKL  240 (298)
Q Consensus       161 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  240 (298)
                      ..+++|+.+++..+....++.     ..+++++.|++.++.........+..++.++.|++++|.+..+....+      
T Consensus       147 ~~l~~L~~l~l~~n~l~~l~~-----~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~------  215 (305)
T d1xkua_         147 QGMKKLSYIRIADTNITTIPQ-----GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL------  215 (305)
T ss_dssp             GGCTTCCEEECCSSCCCSCCS-----SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG------
T ss_pred             ccccccCccccccCCccccCc-----ccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccc------
Confidence            555666666666554432211     123455666666554444444445555566666666665555444443      


Q ss_pred             ccccCCcccEEeccCCCCCCchh-hhhhcCCCcEEEeecCcccccc
Q 038877          241 FRSGFRSLNTVSVDYCQKAKDLT-WLVFAQNLKELRIDSCYDVEEI  285 (298)
Q Consensus       241 ~~~~~~~L~~L~l~~c~~l~~l~-~l~~~~~L~~L~l~~c~~l~~~  285 (298)
                        .++++|+.|++++| .++.++ .+..+++|++|+++++ .++.+
T Consensus       216 --~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i  257 (305)
T d1xkua_         216 --ANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAI  257 (305)
T ss_dssp             --GGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCC
T ss_pred             --cccccceeeecccc-cccccccccccccCCCEEECCCC-ccCcc
Confidence              34556666666665 455553 2445566666666654 34443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=3.4e-20  Score=158.17  Aligned_cols=250  Identities=18%  Similarity=0.210  Sum_probs=169.7

Q ss_pred             cCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchh
Q 038877           16 KTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQE   95 (298)
Q Consensus        16 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~   95 (298)
                      ...+++......+.+|++|+++++.+.++..  ++.+++|++|++++| .++.+|+ ++.+++|++|++++|.+..++. 
T Consensus        31 ~~~~~~~~~~~~l~~l~~L~l~~~~I~~l~g--l~~L~nL~~L~Ls~N-~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~-  105 (384)
T d2omza2          31 KTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITP-  105 (384)
T ss_dssp             CSSTTSEECHHHHTTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred             CCCCCCccCHHHhCCCCEEECCCCCCCCccc--cccCCCCCEEeCcCC-cCCCCcc-ccCCcccccccccccccccccc-
Confidence            3344443233457789999999999988754  789999999999999 8988875 8899999999999999988764 


Q ss_pred             hcCCCcccEEeccCCccCCCCc----------------------------------------------------------
Q 038877           96 LKALEKLRYLSLEGTRHLSIIP----------------------------------------------------------  117 (298)
Q Consensus        96 ~~~l~~L~~L~l~~~~~~~~~~----------------------------------------------------------  117 (298)
                      ++.+++|+.+++.++...+..+                                                          
T Consensus       106 l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (384)
T d2omza2         106 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN  185 (384)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccc
Confidence            7899999999987763321000                                                          


Q ss_pred             ----hhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhcccccccccee
Q 038877          118 ----HQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQ  193 (298)
Q Consensus       118 ----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~  193 (298)
                          ......+++++.+.+++|.+..                + ......++|+.++++++....+..+    ..+++++
T Consensus       186 ~~~~~~~~~~l~~~~~l~l~~n~i~~----------------~-~~~~~~~~L~~L~l~~n~l~~~~~l----~~l~~L~  244 (384)
T d2omza2         186 KVSDISVLAKLTNLESLIATNNQISD----------------I-TPLGILTNLDELSLNGNQLKDIGTL----ASLTNLT  244 (384)
T ss_dssp             CCCCCGGGGGCTTCSEEECCSSCCCC----------------C-GGGGGCTTCCEEECCSSCCCCCGGG----GGCTTCS
T ss_pred             ccccccccccccccceeeccCCccCC----------------C-CcccccCCCCEEECCCCCCCCcchh----hcccccc
Confidence                0124457888999999887743                1 1234456777777776655443322    2335667


Q ss_pred             EEEEeccCCCCcccccccccccccceecccCCccee-eecchhh-----------hhccccccCCcccEEeccCCCCCCc
Q 038877          194 SVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEM-KIDSAEE-----------VKKLFRSGFRSLNTVSVDYCQKAKD  261 (298)
Q Consensus       194 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~-----------~~~~~~~~~~~L~~L~l~~c~~l~~  261 (298)
                      .+++.+|......  .+..+++|+.|+++++....+ +......           ........+++++.|++++| .+++
T Consensus       245 ~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n-~l~~  321 (384)
T d2omza2         245 DLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISD  321 (384)
T ss_dssp             EEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSC
T ss_pred             hhccccCccCCCC--cccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCC-CCCC
Confidence            7777766543322  355666777777766655441 1111000           00011256789999999999 8888


Q ss_pred             hhhhhhcCCCcEEEeecCcccccccccCcccccc
Q 038877          262 LTWLVFAQNLKELRIDSCYDVEEIISVDKLSDIS  295 (298)
Q Consensus       262 l~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~  295 (298)
                      ++.+..+|+|++|++.+| .+++++.......++
T Consensus       322 l~~l~~l~~L~~L~L~~n-~l~~l~~l~~l~~L~  354 (384)
T d2omza2         322 ISPVSSLTKLQRLFFANN-KVSDVSSLANLTNIN  354 (384)
T ss_dssp             CGGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCC
T ss_pred             CcccccCCCCCEEECCCC-CCCCChhHcCCCCCC
Confidence            887889999999999999 677776555544433

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.82  E-value=1.7e-20  Score=156.04  Aligned_cols=106  Identities=22%  Similarity=0.306  Sum_probs=51.7

Q ss_pred             cccEEEecCCccc---ccCchHHhcCCCccEEEccC-CcCCccCCccccCccCCCeeeccCCccccc-chhhcCCCcccE
Q 038877           30 RLVTFLLDGNWIE---EITDGFFRSMSSLRVLSLRR-NLALSKLPSGISNLVSLHHLDLSWTRIRGL-PQELKALEKLRY  104 (298)
Q Consensus        30 ~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~-~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~  104 (298)
                      +++.|+++++.+.   .+|.. ++.+++|++|++++ |...+.+|..++++++|++|++++|.+..+ +..+..+++|++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~-l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChH-HhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            4555555555443   23343 45555555555543 311224555555555555555555544422 233445555555


Q ss_pred             EeccCCccCCCCchhhhcCCCcccEEEeeccCC
Q 038877          105 LSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus       105 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  137 (298)
                      +++++|.....+|.. ++++++++.+++++|.+
T Consensus       130 l~l~~N~~~~~~p~~-l~~l~~L~~l~l~~n~l  161 (313)
T d1ogqa_         130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRI  161 (313)
T ss_dssp             EECCSSEEESCCCGG-GGGCTTCCEEECCSSCC
T ss_pred             cccccccccccCchh-hccCcccceeecccccc
Confidence            555555444444443 55555555555555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=1.6e-18  Score=143.41  Aligned_cols=241  Identities=18%  Similarity=0.181  Sum_probs=185.4

Q ss_pred             CCccEEEeecCCCcCCCC--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeec
Q 038877            7 EGAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDL   84 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l   84 (298)
                      +++++|++++|.++.+|.  +..+++|++|++++|.+..+++..+..+++|++|++++| .++.+|..+  ...++.|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n-~l~~l~~~~--~~~l~~L~~  107 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKM--PKTLQELRV  107 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSC--CTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC-ccCcCccch--hhhhhhhhc
Confidence            679999999999999873  588999999999999998887666999999999999999 888888643  468999999


Q ss_pred             cCCcccccchh-hcCCCcccEEeccCCccCC-CCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcC
Q 038877           85 SWTRIRGLPQE-LKALEKLRYLSLEGTRHLS-IIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLG  162 (298)
Q Consensus        85 ~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  162 (298)
                      ..+.+..++.. +.....+..+....+.... ......+..+++|+.+++.+|.+..                ++..  .
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~----------------l~~~--~  169 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT----------------IPQG--L  169 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS----------------CCSS--C
T ss_pred             cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc----------------cCcc--c
Confidence            99988877643 5667778888877663221 1222347888999999999988732                2221  2


Q ss_pred             CCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhcccc
Q 038877          163 LKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFR  242 (298)
Q Consensus       163 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  242 (298)
                      +++|+.++++++......  .......+.+++|.+++|........++.++++|++|++++|++.+++. .+        
T Consensus       170 ~~~L~~L~l~~n~~~~~~--~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~-~l--------  238 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-GL--------  238 (305)
T ss_dssp             CTTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-TT--------
T ss_pred             CCccCEEECCCCcCCCCC--hhHhhccccccccccccccccccccccccccccceeeeccccccccccc-cc--------
Confidence            578999998876654322  1223445678999999987777767778899999999999998877542 33        


Q ss_pred             ccCCcccEEeccCCCCCCchhh--------hhhcCCCcEEEeecCc
Q 038877          243 SGFRSLNTVSVDYCQKAKDLTW--------LVFAQNLKELRIDSCY  280 (298)
Q Consensus       243 ~~~~~L~~L~l~~c~~l~~l~~--------l~~~~~L~~L~l~~c~  280 (298)
                      ..+++|+.|++++| .+++++.        ....++|+.|++++++
T Consensus       239 ~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         239 ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            46899999999998 6888742        2346899999999986

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.80  E-value=6.4e-20  Score=152.47  Aligned_cols=247  Identities=16%  Similarity=0.165  Sum_probs=184.8

Q ss_pred             CCccEEEeecCCCcC---CC-CCCCCCcccEEEecC-Cccc-ccCchHHhcCCCccEEEccCCcCCcc-CCccccCccCC
Q 038877            7 EGAKRISLMKTGIQS---PS-EIPTCPRLVTFLLDG-NWIE-EITDGFFRSMSSLRVLSLRRNLALSK-LPSGISNLVSL   79 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~---~~-~~~~~~~L~~L~l~~-~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~p~~~~~l~~L   79 (298)
                      .+++.|+++++.+.+   +| .+..+++|++|++++ |.+. .+|.. ++++++|++|++++| .+.. .+..+..+.+|
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N-~l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGGGCTTC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhccc-cccccccccccchhhh
Confidence            368999999998875   55 558999999999997 5665 78887 899999999999999 6664 46678889999


Q ss_pred             CeeeccCCccc-ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcc-cEEEeeccCCccccccccccccccCchhHH
Q 038877           80 HHLDLSWTRIR-GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKL-EVLRLLWCGLWSRKEQEEGSVLYDDAEPLM  157 (298)
Q Consensus        80 ~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  157 (298)
                      +++++++|... .+|..++.++.++.++++++...+.+|.. +..+.++ +.+.+++|.+.+               ..+
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~~---------------~~~  191 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTG---------------KIP  191 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEE---------------ECC
T ss_pred             cccccccccccccCchhhccCcccceeeccccccccccccc-cccccccccccccccccccc---------------ccc
Confidence            99999999665 78889999999999999999776778876 6777775 889999888733               334


Q ss_pred             HhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhh
Q 038877          158 KELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEV  237 (298)
Q Consensus       158 ~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  237 (298)
                      ..+..+... .+++..+...  ...+......+.++.+++.++.... ....+..+++|+.|++++|++...-+..+   
T Consensus       192 ~~~~~l~~~-~l~l~~~~~~--~~~~~~~~~~~~l~~l~~~~~~l~~-~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l---  264 (313)
T d1ogqa_         192 PTFANLNLA-FVDLSRNMLE--GDASVLFGSDKNTQKIHLAKNSLAF-DLGKVGLSKNLNGLDLRNNRIYGTLPQGL---  264 (313)
T ss_dssp             GGGGGCCCS-EEECCSSEEE--ECCGGGCCTTSCCSEEECCSSEECC-BGGGCCCCTTCCEEECCSSCCEECCCGGG---
T ss_pred             ccccccccc-cccccccccc--ccccccccccccccccccccccccc-cccccccccccccccCccCeecccCChHH---
Confidence            445444433 4555544332  1222333445677888888876433 23457778899999999999876323334   


Q ss_pred             hccccccCCcccEEeccCCCCCC-chhhhhhcCCCcEEEeecCccccc
Q 038877          238 KKLFRSGFRSLNTVSVDYCQKAK-DLTWLVFAQNLKELRIDSCYDVEE  284 (298)
Q Consensus       238 ~~~~~~~~~~L~~L~l~~c~~l~-~l~~l~~~~~L~~L~l~~c~~l~~  284 (298)
                           ..+++|+.|++++| .++ .+|....+++|+.+++.+++.+..
T Consensus       265 -----~~L~~L~~L~Ls~N-~l~g~iP~~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         265 -----TQLKFLHSLNVSFN-NLCGEIPQGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             -----GGCTTCCEEECCSS-EEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred             -----hCCCCCCEEECcCC-cccccCCCcccCCCCCHHHhCCCccccC
Confidence                 46889999999998 566 566666788888888888776544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.4e-18  Score=140.90  Aligned_cols=153  Identities=21%  Similarity=0.167  Sum_probs=117.1

Q ss_pred             cCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeec
Q 038877            5 EWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDL   84 (298)
Q Consensus         5 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l   84 (298)
                      +...+..++.+++.++.+|... .+++++|++++|.+..++...|..+++|++|++++| .++.+|. ++.+++|++|++
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~-~~~l~~L~~L~L   84 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLDL   84 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEEC
T ss_pred             ccCCCeEEEccCCCCCeeCcCc-CcCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc-cccccccccccc
Confidence            3455667788888888887421 257999999999998888766889999999999999 8887764 577899999999


Q ss_pred             cCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCC
Q 038877           85 SWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLK  164 (298)
Q Consensus        85 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  164 (298)
                      ++|.++..+..+..+++|+.|+++++.. ..++...+..+.+++.|++.+|.+..               .....+..++
T Consensus        85 s~N~l~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~l~~l~~L~l~~n~l~~---------------l~~~~~~~l~  148 (266)
T d1p9ag_          85 SHNQLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKT---------------LPPGLLTPTP  148 (266)
T ss_dssp             CSSCCSSCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSCCCC---------------CCTTTTTTCT
T ss_pred             cccccccccccccccccccccccccccc-ceeeccccccccccccccccccccce---------------eccccccccc
Confidence            9999988888888999999999998844 44554457888899999998887732               1223344556


Q ss_pred             CccEEEEEecCc
Q 038877          165 HLNVLSWSLHSS  176 (298)
Q Consensus       165 ~L~~l~l~~~~~  176 (298)
                      +++.++++.+..
T Consensus       149 ~l~~l~l~~N~l  160 (266)
T d1p9ag_         149 KLEKLSLANNNL  160 (266)
T ss_dssp             TCCEEECTTSCC
T ss_pred             cchhcccccccc
Confidence            666666655543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.4e-18  Score=139.26  Aligned_cols=219  Identities=19%  Similarity=0.229  Sum_probs=167.7

Q ss_pred             EEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeeeccC-Cc
Q 038877           11 RISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLDLSW-TR   88 (298)
Q Consensus        11 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~-~~   88 (298)
                      .++.+++.++.+|.. -.+.+++|++++|.++.++...|..+++|++|+++++ .+..++ ..+..+..++.+.... +.
T Consensus        15 ~v~c~~~~L~~iP~~-ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          15 TTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEEcCCCCCCccCCC-CCCCCCEEECcCCcCCCCCHHHhhccccccccccccc-cccccccccccccccccccccccccc
Confidence            456667777777743 1367899999999999888777899999999999999 777654 4566778888887754 46


Q ss_pred             cccc-chhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCcc
Q 038877           89 IRGL-PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLN  167 (298)
Q Consensus        89 ~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  167 (298)
                      +..+ +..+..+++|++|+++++.. ..++...++.+++|+.+++++|.+..               .....+..+++|+
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~~~~L~~l~l~~N~l~~---------------i~~~~f~~~~~L~  156 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQA---------------LPDDTFRDLGNLT  156 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCC---------------CCTTTTTTCTTCC
T ss_pred             cccccchhhcccccCCEEecCCccc-ccccccccchhcccchhhhccccccc---------------cChhHhccccchh
Confidence            6666 45688899999999999844 45554457888999999999998843               2235577788999


Q ss_pred             EEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCc
Q 038877          168 VLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRS  247 (298)
Q Consensus       168 ~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (298)
                      .|+++++....+..  ......+.|+.+.+.+|......+..+..+++|+.|++++|.+..+....+        ..+++
T Consensus       157 ~L~l~~N~l~~l~~--~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~--------~~~~~  226 (284)
T d1ozna_         157 HLFLHGNRISSVPE--RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL--------APLRA  226 (284)
T ss_dssp             EEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH--------TTCTT
T ss_pred             hcccccCcccccch--hhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccc--------ccccc
Confidence            99999887654332  223345788999999887776667778889999999999999888665555        57889


Q ss_pred             ccEEeccCCC
Q 038877          248 LNTVSVDYCQ  257 (298)
Q Consensus       248 L~~L~l~~c~  257 (298)
                      |+.|++++++
T Consensus       227 L~~L~l~~N~  236 (284)
T d1ozna_         227 LQYLRLNDNP  236 (284)
T ss_dssp             CCEEECCSSC
T ss_pred             cCEEEecCCC
Confidence            9999999863

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.8e-18  Score=139.08  Aligned_cols=198  Identities=17%  Similarity=0.125  Sum_probs=152.9

Q ss_pred             CCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeeeccCCcccccchhhcCCCcccEE
Q 038877           27 TCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYL  105 (298)
Q Consensus        27 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L  105 (298)
                      ....+.+++.+++.++.+|+. +  -+++++|++++| .++.+| ..|..+++|++|++++|.++.++. ++.+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~-l--p~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPD-L--PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSC-C--CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCCeeCcC-c--CcCCCEEECcCC-cCCCcCHHHhhcccccccccccccccccccc-cccccccccc
Confidence            345567788888888888875 3  257999999999 888876 468899999999999999998874 5789999999


Q ss_pred             eccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccc
Q 038877          106 SLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKY  185 (298)
Q Consensus       106 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~  185 (298)
                      ++++|. +...+.. +.++++|+.|+++++.+..               .....+..+.+++.++++++....+..  ..
T Consensus        83 ~Ls~N~-l~~~~~~-~~~l~~L~~L~l~~~~~~~---------------~~~~~~~~l~~l~~L~l~~n~l~~l~~--~~  143 (266)
T d1p9ag_          83 DLSHNQ-LQSLPLL-GQTLPALTVLDVSFNRLTS---------------LPLGALRGLGELQELYLKGNELKTLPP--GL  143 (266)
T ss_dssp             ECCSSC-CSSCCCC-TTTCTTCCEEECCSSCCCC---------------CCSSTTTTCTTCCEEECTTSCCCCCCT--TT
T ss_pred             cccccc-ccccccc-cccccccccccccccccce---------------eeccccccccccccccccccccceecc--cc
Confidence            999994 4555553 8899999999999988732               234555677889999988876654332  22


Q ss_pred             cccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCC
Q 038877          186 PKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQ  257 (298)
Q Consensus       186 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  257 (298)
                      ....+.++.+++++|.........+..+++|+.|++++|.+..++...+         .+++|+.|++++++
T Consensus       144 ~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~---------~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF---------GSHLLPFAFLHGNP  206 (266)
T ss_dssp             TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---------TTCCCSEEECCSCC
T ss_pred             ccccccchhcccccccccccCccccccccccceeecccCCCcccChhHC---------CCCCCCEEEecCCC
Confidence            2345678899999987777777778888999999999998876654433         57889999999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=8.7e-18  Score=132.89  Aligned_cols=190  Identities=22%  Similarity=0.283  Sum_probs=118.9

Q ss_pred             HhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCccc
Q 038877           49 FRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLE  128 (298)
Q Consensus        49 ~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  128 (298)
                      ...+.+|+.|++.+| .++.++ ++..+++|++|++++|.+..++. +..+++|+.+++.+| ..+.++.  ++++++|+
T Consensus        37 ~~~l~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n-~~~~i~~--l~~l~~L~  110 (227)
T d1h6ua2          37 QADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVSA--IAGLQSIK  110 (227)
T ss_dssp             HHHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCGG--GTTCTTCC
T ss_pred             HHHcCCcCEEECCCC-CCCcch-hHhcCCCCcEeecCCceeecccc-ccccccccccccccc-ccccccc--cccccccc
Confidence            344556666666666 555553 45566666666666665555432 555666666666665 2334443  55666666


Q ss_pred             EEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccc
Q 038877          129 VLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVL  208 (298)
Q Consensus       129 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  208 (298)
                      .+.++++....                 ...+...+.++.+.++.+.......+    ...++++.|.+.+|...+  ..
T Consensus       111 ~l~l~~~~~~~-----------------~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~L~~L~l~~n~~~~--~~  167 (227)
T d1h6ua2         111 TLDLTSTQITD-----------------VTPLAGLSNLQVLYLDLNQITNISPL----AGLTNLQYLSIGNAQVSD--LT  167 (227)
T ss_dssp             EEECTTSCCCC-----------------CGGGTTCTTCCEEECCSSCCCCCGGG----GGCTTCCEEECCSSCCCC--CG
T ss_pred             ccccccccccc-----------------cchhccccchhhhhchhhhhchhhhh----cccccccccccccccccc--ch
Confidence            66666555421                 12234455566666555443322221    223556777777765432  23


Q ss_pred             cccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchhhhhhcCCCcEEEeec
Q 038877          209 HLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDS  278 (298)
Q Consensus       209 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~L~~L~l~~  278 (298)
                      .++++++|+.|++++|.+.++.  .+        ..+++|++|++++| .+++++.+..+++|++|++++
T Consensus       168 ~l~~l~~L~~L~Ls~n~l~~l~--~l--------~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         168 PLANLSKLTTLKADDNKISDIS--PL--------ASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCG--GG--------GGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred             hhcccccceecccCCCccCCCh--hh--------cCCCCCCEEECcCC-cCCCCcccccCCCCCEEEeeC
Confidence            4778899999999999876532  23        57899999999999 799998888999999999874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.9e-18  Score=138.95  Aligned_cols=204  Identities=22%  Similarity=0.257  Sum_probs=168.3

Q ss_pred             CCccEEEeecCCCcCCCC--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeee
Q 038877            7 EGAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLD   83 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~   83 (298)
                      +.+++|++++|.++.+|.  +..+++|++|+++++.+..++...+..+..++.+....+..+..+ +..+.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            468999999999999764  588999999999999998777776888999999987765477766 55789999999999


Q ss_pred             ccCCcccccc-hhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcC
Q 038877           84 LSWTRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLG  162 (298)
Q Consensus        84 l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  162 (298)
                      +++|.+..++ ..+...++|+.++++++ .++.++...++.+++|+.|++++|.+..               ..+..+..
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l~~N~l~~---------------l~~~~f~~  175 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISS---------------VPERAFRG  175 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCE---------------ECTTTTTT
T ss_pred             cCCcccccccccccchhcccchhhhccc-cccccChhHhccccchhhcccccCcccc---------------cchhhhcc
Confidence            9999887654 45778899999999998 4567776668899999999999999832               34467788


Q ss_pred             CCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcce
Q 038877          163 LKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE  228 (298)
Q Consensus       163 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  228 (298)
                      +++|+.++++++....+.  +......++++.|++++|.........++.+++|++|++++|....
T Consensus       176 l~~L~~l~l~~N~l~~i~--~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         176 LHSLDRLLLHQNRVAHVH--PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             ccccchhhhhhccccccC--hhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            999999999988765433  2334555788999999998877777789999999999999998764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.7e-18  Score=140.42  Aligned_cols=248  Identities=15%  Similarity=0.152  Sum_probs=156.8

Q ss_pred             cEEEeecCCCcC--CCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCc--cCCccccCccCCCeeecc
Q 038877           10 KRISLMKTGIQS--PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALS--KLPSGISNLVSLHHLDLS   85 (298)
Q Consensus        10 ~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~   85 (298)
                      ++++++++.+..  +..+.. .....+.+....+...... .....+|++|++++| .+.  .++..+..+++|++|++.
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~-~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhh-hccCCCCCEEECCCC-ccCHHHHHHHHHhCCCccccccc
Confidence            356777665432  101100 1234455555443322222 334567899999988 554  244557788999999999


Q ss_pred             CCccc-ccchhhcCCCcccEEeccCCccCCCCc-hhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhc-C
Q 038877           86 WTRIR-GLPQELKALEKLRYLSLEGTRHLSIIP-HQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELL-G  162 (298)
Q Consensus        86 ~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~  162 (298)
                      ++.+. .....+.++++|++|++++|..++... ..+..++++|++|++++|....             ...+...+. .
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~-------------~~~~~~~~~~~  146 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT-------------EKHVQVAVAHV  146 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC-------------HHHHHHHHHHS
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccc-------------cccchhhhccc
Confidence            88776 455667888899999999875554321 1224578899999998875422             223333333 3


Q ss_pred             CCCccEEEEEecCc-cchhhhccccccccceeEEEEeccCC-CCcccccccccccccceecccCCcce-eeecchhhhhc
Q 038877          163 LKHLNVLSWSLHSS-LAVQKFLKYPKLLSITQSVGVYFCQS-PPLNVLHLAYMENLQELVILNSDLEE-MKIDSAEEVKK  239 (298)
Q Consensus       163 l~~L~~l~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~  239 (298)
                      +++|+.++++++.. .....+......+++|++|++++|.. .+.....+..+++|++|++++|...+ ..+..+     
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L-----  221 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL-----  221 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG-----
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHH-----
Confidence            47899998886532 23334444455678889999988753 55566678888999999999876544 444444     


Q ss_pred             cccccCCcccEEeccCCCCCCchhhh-hhcCCCcEEEeecCcccccc
Q 038877          240 LFRSGFRSLNTVSVDYCQKAKDLTWL-VFAQNLKELRIDSCYDVEEI  285 (298)
Q Consensus       240 ~~~~~~~~L~~L~l~~c~~l~~l~~l-~~~~~L~~L~l~~c~~l~~~  285 (298)
                         ..+|+|+.|++.+|..-..+..+ ..+|+|+.    +|..++.+
T Consensus       222 ---~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~i----~~~~ls~~  261 (284)
T d2astb2         222 ---GEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI----NCSHFTTI  261 (284)
T ss_dssp             ---GGCTTCCEEECTTSSCTTCHHHHHHHSTTSEE----SCCCSCCT
T ss_pred             ---hcCCCCCEEeeeCCCCHHHHHHHHHhCccccc----cCccCCCC
Confidence               46789999999988333334433 56888773    56666655

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=2.9e-17  Score=129.80  Aligned_cols=202  Identities=20%  Similarity=0.264  Sum_probs=122.7

Q ss_pred             EeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCccccc
Q 038877           13 SLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGL   92 (298)
Q Consensus        13 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l   92 (298)
                      ++..+.+.+......+.+|+.|++.+|.+.++..  ++.+++|++|++++| .+..+++ +..+++++++++++|.++.+
T Consensus        25 ~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~ls~n-~i~~~~~-l~~l~~l~~l~~~~n~~~~i  100 (227)
T d1h6ua2          25 AAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNV  100 (227)
T ss_dssp             HTTCSSTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCC
T ss_pred             HhCCCCcCCcCCHHHcCCcCEEECCCCCCCcchh--HhcCCCCcEeecCCc-eeecccc-cccccccccccccccccccc
Confidence            3344444443333456667777777776666543  666777777777777 5555543 56667777777777666655


Q ss_pred             chhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEE
Q 038877           93 PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWS  172 (298)
Q Consensus        93 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~  172 (298)
                      + .+..+++|+.++++++.. ...+.  +...+.++.+.++.+.+..                 ...+..+++|+.++++
T Consensus       101 ~-~l~~l~~L~~l~l~~~~~-~~~~~--~~~~~~~~~l~~~~~~~~~-----------------~~~~~~~~~L~~L~l~  159 (227)
T d1h6ua2         101 S-AIAGLQSIKTLDLTSTQI-TDVTP--LAGLSNLQVLYLDLNQITN-----------------ISPLAGLTNLQYLSIG  159 (227)
T ss_dssp             G-GGTTCTTCCEEECTTSCC-CCCGG--GTTCTTCCEEECCSSCCCC-----------------CGGGGGCTTCCEEECC
T ss_pred             c-cccccccccccccccccc-cccch--hccccchhhhhchhhhhch-----------------hhhhcccccccccccc
Confidence            4 355667777777766632 22222  4566667777766665522                 1224456667777776


Q ss_pred             ecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEe
Q 038877          173 LHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVS  252 (298)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  252 (298)
                      ++.......+    ..+++|++|++++|...+.  ..++.+++|+.|++++|++.+++  .+        ..+++|+.|+
T Consensus       160 ~n~~~~~~~l----~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~--~l--------~~l~~L~~L~  223 (227)
T d1h6ua2         160 NAQVSDLTPL----ANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS--PL--------ANTSNLFIVT  223 (227)
T ss_dssp             SSCCCCCGGG----TTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCG--GG--------TTCTTCCEEE
T ss_pred             ccccccchhh----cccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCc--cc--------ccCCCCCEEE
Confidence            6654433322    2235677777777755442  34677888888888888776632  23        5778888888


Q ss_pred             ccC
Q 038877          253 VDY  255 (298)
Q Consensus       253 l~~  255 (298)
                      +++
T Consensus       224 lsn  226 (227)
T d1h6ua2         224 LTN  226 (227)
T ss_dssp             EEE
T ss_pred             eeC
Confidence            764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=4.7e-17  Score=126.97  Aligned_cols=164  Identities=24%  Similarity=0.243  Sum_probs=76.4

Q ss_pred             CCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEEec
Q 038877           28 CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSL  107 (298)
Q Consensus        28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l  107 (298)
                      +..|+.|++++|.+..++.  ++.+++|++|++++| .++.+++ ++.+++|++|++++|.++.++ .+..+++|+.+++
T Consensus        45 L~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEEC
T ss_pred             hcCccEEECcCCCCCCchh--HhhCCCCCEEeCCCc-cccCccc-cccCccccccccccccccccc-ccccccccccccc
Confidence            3445555555554444332  444555555555555 4444432 344555555555555554444 2444555555555


Q ss_pred             cCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccc
Q 038877          108 EGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPK  187 (298)
Q Consensus       108 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~  187 (298)
                      .++. ...++.  +.++++++.+++++|.+..                 ...+..+++|+.++++++....+..    ..
T Consensus       120 ~~~~-~~~~~~--l~~l~~l~~l~~~~n~l~~-----------------~~~~~~l~~L~~l~l~~n~l~~i~~----l~  175 (210)
T d1h6ta2         120 EHNG-ISDING--LVHLPQLESLYLGNNKITD-----------------ITVLSRLTKLDTLSLEDNQISDIVP----LA  175 (210)
T ss_dssp             TTSC-CCCCGG--GGGCTTCCEEECCSSCCCC-----------------CGGGGGCTTCSEEECCSSCCCCCGG----GT
T ss_pred             cccc-cccccc--ccccccccccccccccccc-----------------ccccccccccccccccccccccccc----cc
Confidence            5542 222222  4455555555555544421                 1123334555555555444332221    12


Q ss_pred             cccceeEEEEeccCCCCcccccccccccccceecc
Q 038877          188 LLSITQSVGVYFCQSPPLNVLHLAYMENLQELVIL  222 (298)
Q Consensus       188 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  222 (298)
                      ..++|++|++++|...+.  .++.++++|+.|+++
T Consensus       176 ~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         176 GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELF  208 (210)
T ss_dssp             TCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEE
T ss_pred             CCCCCCEEECCCCCCCCC--hhhcCCCCCCEEEcc
Confidence            234455555555543322  245566666666664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=6.6e-17  Score=125.07  Aligned_cols=163  Identities=20%  Similarity=0.263  Sum_probs=89.1

Q ss_pred             CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEE
Q 038877           26 PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYL  105 (298)
Q Consensus        26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L  105 (298)
                      ..++++++|+++++.+.++..  ++.+++|++|++++| .++.+++ ++.+++|++|++++|.+..++. +..+++|+.+
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~~--l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L  111 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGL  111 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred             HHhcCCCEEECCCCCCCCccc--cccCCCcCcCccccc-cccCccc-ccCCcccccccccccccccccc-cccccccccc
Confidence            345556666666666555433  555666666666666 5555443 5566666666666665555542 5556666666


Q ss_pred             eccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccc
Q 038877          106 SLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKY  185 (298)
Q Consensus       106 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~  185 (298)
                      +++++.. ...+.  +.++++|+.+++++|.+..                 ...+..+++++.+++.++....+..+   
T Consensus       112 ~l~~~~~-~~~~~--~~~l~~L~~L~l~~n~l~~-----------------~~~l~~~~~L~~L~l~~n~l~~l~~l---  168 (199)
T d2omxa2         112 TLFNNQI-TDIDP--LKNLTNLNRLELSSNTISD-----------------ISALSGLTSLQQLNFSSNQVTDLKPL---  168 (199)
T ss_dssp             ECCSSCC-CCCGG--GTTCTTCSEEECCSSCCCC-----------------CGGGTTCTTCSEEECCSSCCCCCGGG---
T ss_pred             ccccccc-ccccc--cchhhhhHHhhhhhhhhcc-----------------cccccccccccccccccccccCCccc---
Confidence            6665522 22222  5566666666666665521                 22355566666666665554433321   


Q ss_pred             cccccceeEEEEeccCCCCcccccccccccccce
Q 038877          186 PKLLSITQSVGVYFCQSPPLNVLHLAYMENLQEL  219 (298)
Q Consensus       186 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  219 (298)
                       ..+++|++|++++|...+.  ..+.++++|++|
T Consensus       169 -~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         169 -ANLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             -TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             -cCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence             2235566667666654332  235566666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.70  E-value=4.5e-16  Score=130.57  Aligned_cols=257  Identities=18%  Similarity=0.181  Sum_probs=162.6

Q ss_pred             CCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccC
Q 038877            7 EGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSW   86 (298)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~   86 (298)
                      .++++|+++++.++.+|+.  +++|++|++++|.++.+|..    ..+|+.|+++++ .+..++..   .+.|++|++++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n-~l~~l~~l---p~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL----PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSS-CCSCCCSC---CTTCCEEECCS
T ss_pred             cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCcccccc----hhhhhhhhhhhc-ccchhhhh---ccccccccccc
Confidence            4688999999999998864  67899999999999888764    468999999999 77766542   24699999999


Q ss_pred             CcccccchhhcCCCcccEEeccCCccCCCCch------------------hhhcCCCcccEEEeeccCCcccccc----c
Q 038877           87 TRIRGLPQELKALEKLRYLSLEGTRHLSIIPH------------------QLISGFSKLEVLRLLWCGLWSRKEQ----E  144 (298)
Q Consensus        87 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~------------------~~~~~l~~L~~L~l~~~~~~~~~~~----~  144 (298)
                      |.+..+|. ++.+++|+++++.++... ..+.                  ..+..++.++.+.+.++........    .
T Consensus       108 n~l~~lp~-~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~  185 (353)
T d1jl5a_         108 NQLEKLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLE  185 (353)
T ss_dssp             SCCSSCCC-CTTCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred             cccccccc-hhhhccceeecccccccc-ccccccccccchhhccccccccccccccccceeccccccccccccccccccc
Confidence            99988875 578899999999887432 2111                  1134566677777776654321110    0


Q ss_pred             cccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccc--------------cccccceeEEEEeccCCCC---c--
Q 038877          145 EGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKY--------------PKLLSITQSVGVYFCQSPP---L--  205 (298)
Q Consensus       145 ~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~--------------~~~~~~L~~L~l~~~~~~~---~--  205 (298)
                      .... .............++.++.++++.+...........              ......+....+..+....   .  
T Consensus       186 ~l~~-~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~  264 (353)
T d1jl5a_         186 SIVA-GNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP  264 (353)
T ss_dssp             EEEC-CSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCT
T ss_pred             cccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            0000 000111223345677888888876554322211110              0111222333322221100   0  


Q ss_pred             ----------cccc-ccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchhhhhhcCCCcEE
Q 038877          206 ----------NVLH-LAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKEL  274 (298)
Q Consensus       206 ----------~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~L~~L  274 (298)
                                .... ...+++|++|++++|.+..++            ..+++|+.|++++| .+++++  ..+++|++|
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp------------~~~~~L~~L~L~~N-~L~~l~--~~~~~L~~L  329 (353)
T d1jl5a_         265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP------------ALPPRLERLIASFN-HLAEVP--ELPQNLKQL  329 (353)
T ss_dssp             TCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCC------------CCCTTCCEEECCSS-CCSCCC--CCCTTCCEE
T ss_pred             hhcccccccCccccccccCCCCCEEECCCCccCccc------------cccCCCCEEECCCC-cCCccc--cccCCCCEE
Confidence                      0001 122578999999999877643            35789999999999 788876  346799999


Q ss_pred             EeecCcccccccccCccc
Q 038877          275 RIDSCYDVEEIISVDKLS  292 (298)
Q Consensus       275 ~l~~c~~l~~~~~~~~~~  292 (298)
                      ++++|+ +++++......
T Consensus       330 ~L~~N~-L~~lp~~~~~L  346 (353)
T d1jl5a_         330 HVEYNP-LREFPDIPESV  346 (353)
T ss_dssp             ECCSSC-CSSCCCCCTTC
T ss_pred             ECcCCc-CCCCCcccccc
Confidence            999996 88888655433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=7.4e-17  Score=124.77  Aligned_cols=163  Identities=19%  Similarity=0.268  Sum_probs=94.7

Q ss_pred             EecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEEeccCCccCC
Q 038877           35 LLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLS  114 (298)
Q Consensus        35 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~  114 (298)
                      .+.++.+.+...  ...++++++|+++++ .+..++ ++..+++|++|++++|.++.++. ++.+++|++|++++| ...
T Consensus        24 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~-~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n-~~~   97 (199)
T d2omxa2          24 VLGKTNVTDTVS--QTDLDQVTTLQADRL-GIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIA   97 (199)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCC
T ss_pred             HhCCCCCCCccC--HHHhcCCCEEECCCC-CCCCcc-ccccCCCcCcCccccccccCccc-ccCCccccccccccc-ccc
Confidence            344444443332  234566777777776 665553 35666777777777776666553 666677777777666 334


Q ss_pred             CCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeE
Q 038877          115 IIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQS  194 (298)
Q Consensus       115 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~  194 (298)
                      .++.  ++++++|+.++++++....                 ...+..+++|+.++++++....++.+    ...+.++.
T Consensus        98 ~~~~--l~~l~~L~~L~l~~~~~~~-----------------~~~~~~l~~L~~L~l~~n~l~~~~~l----~~~~~L~~  154 (199)
T d2omxa2          98 DITP--LANLTNLTGLTLFNNQITD-----------------IDPLKNLTNLNRLELSSNTISDISAL----SGLTSLQQ  154 (199)
T ss_dssp             CCGG--GTTCTTCSEEECCSSCCCC-----------------CGGGTTCTTCSEEECCSSCCCCCGGG----TTCTTCSE
T ss_pred             cccc--ccccccccccccccccccc-----------------ccccchhhhhHHhhhhhhhhcccccc----cccccccc
Confidence            4443  5667777777776665522                 12355566677777766654433322    23355667


Q ss_pred             EEEeccCCCCcccccccccccccceecccCCcce
Q 038877          195 VGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE  228 (298)
Q Consensus       195 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  228 (298)
                      |++.+|...+.  ..++++++|+.|++++|++.+
T Consensus       155 L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         155 LNFSSNQVTDL--KPLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccccCC--ccccCCCCCCEEECCCCCCCC
Confidence            77766654332  235666777777777776554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=3.3e-16  Score=122.08  Aligned_cols=166  Identities=23%  Similarity=0.301  Sum_probs=138.2

Q ss_pred             cCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeec
Q 038877            5 EWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDL   84 (298)
Q Consensus         5 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l   84 (298)
                      .+.+|+.|+++++.+..++++..+++|++|++++|.+..+++  ++.+++|++|++++| .++.+| .+..+++|+.|++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEEC
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc--cccCccccccccccc-cccccc-ccccccccccccc
Confidence            467899999999999998888889999999999999988775  678999999999999 888877 4788999999999


Q ss_pred             cCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCC
Q 038877           85 SWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLK  164 (298)
Q Consensus        85 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  164 (298)
                      .+|.+..++ .+..+++++.++++++. +...+.  +..+++|+.+++++|.+..                 ...+..++
T Consensus       120 ~~~~~~~~~-~l~~l~~l~~l~~~~n~-l~~~~~--~~~l~~L~~l~l~~n~l~~-----------------i~~l~~l~  178 (210)
T d1h6ta2         120 EHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISD-----------------IVPLAGLT  178 (210)
T ss_dssp             TTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCC-----------------CGGGTTCT
T ss_pred             ccccccccc-ccccccccccccccccc-cccccc--ccccccccccccccccccc-----------------cccccCCC
Confidence            999887765 57788999999999884 444443  7889999999999998842                 23477899


Q ss_pred             CccEEEEEecCccchhhhccccccccceeEEEEec
Q 038877          165 HLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYF  199 (298)
Q Consensus       165 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  199 (298)
                      +|+.|++++|....++.+.    .+++|+.|++++
T Consensus       179 ~L~~L~Ls~N~i~~l~~l~----~l~~L~~L~Ls~  209 (210)
T d1h6ta2         179 KLQNLYLSKNHISDLRALA----GLKNLDVLELFS  209 (210)
T ss_dssp             TCCEEECCSSCCCBCGGGT----TCTTCSEEEEEE
T ss_pred             CCCEEECCCCCCCCChhhc----CCCCCCEEEccC
Confidence            9999999999888876433    347789999875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5e-17  Score=132.73  Aligned_cols=181  Identities=22%  Similarity=0.159  Sum_probs=77.5

Q ss_pred             cCCCeeeccCCccc--ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCch
Q 038877           77 VSLHHLDLSWTRIR--GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAE  154 (298)
Q Consensus        77 ~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      .+|++|+++++.+.  .+...+.++++|++|++.+|...+..+.. ++++++|++|++++|...+             ..
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~it-------------d~  111 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFS-------------EF  111 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCC-------------HH
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCcccccccccc-------------cc
Confidence            45555555555443  23344455555555555555322222222 4455555555555543211             11


Q ss_pred             hHHHhhcCCCCccEEEEEecCccchhhhcc-ccccccceeEEEEeccC--CCCccccc-ccccccccceecccCCcce-e
Q 038877          155 PLMKELLGLKHLNVLSWSLHSSLAVQKFLK-YPKLLSITQSVGVYFCQ--SPPLNVLH-LAYMENLQELVILNSDLEE-M  229 (298)
Q Consensus       155 ~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~--~~~~~~~~-l~~l~~L~~L~l~~~~~~~-~  229 (298)
                      .+......+++|+.|+++++.......+.. ....++.++.|++.++.  ..+..... ...+|+|+.|++++|...+ .
T Consensus       112 ~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~  191 (284)
T d2astb2         112 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND  191 (284)
T ss_dssp             HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG
T ss_pred             ccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCch
Confidence            222223345555555555443222111111 11223445555555432  11111112 2334555555555544332 2


Q ss_pred             eecchhhhhccccccCCcccEEeccCCCCCCchh--hhhhcCCCcEEEeecC
Q 038877          230 KIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT--WLVFAQNLKELRIDSC  279 (298)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~~~~L~~L~l~~c  279 (298)
                      .+..+        ..+++|++|++++|..+++..  .+..+|+|++|++.+|
T Consensus       192 ~~~~l--------~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         192 CFQEF--------FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGG--------GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hhhhh--------cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            22233        234555555555555554422  2344555555555555

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.4e-15  Score=121.04  Aligned_cols=125  Identities=14%  Similarity=0.182  Sum_probs=81.7

Q ss_pred             cEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCc-cC-CccccCccCCCeeeccC-
Q 038877           10 KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALS-KL-PSGISNLVSLHHLDLSW-   86 (298)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~-p~~~~~l~~L~~L~l~~-   86 (298)
                      +.++.++..++.+|... .+++++|++++|.+..++...|.++++|++|++++| .+. .+ +..+..+++++++.+.. 
T Consensus        11 ~~i~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n-~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCS-CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESC-TTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCC-CCCCCEEECcCCcCCccChhHhhccchhhhhhhccc-cccceeecccccccccccccccccc
Confidence            67788887777776421 257888888888888777766788888888888888 444 33 33577788888887764 


Q ss_pred             Ccccccc-hhhcCCCcccEEeccCCccCCCCch-hhhcCCCcccEEEeeccCC
Q 038877           87 TRIRGLP-QELKALEKLRYLSLEGTRHLSIIPH-QLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus        87 ~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~  137 (298)
                      +.+..++ ..+..+++|+++++.++.. ...+. ..+..+..+..+...++.+
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l-~~~~~~~~~~~l~~l~~~~~~n~~l  140 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINI  140 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCC-CSCCCCTTTCBSSCEEEEEESCTTC
T ss_pred             ccccccccccccccccccccccchhhh-ccccccccccccccccccccccccc
Confidence            4555433 4567788888888887743 33332 1133344444444444333

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.1e-15  Score=120.09  Aligned_cols=228  Identities=17%  Similarity=0.175  Sum_probs=150.2

Q ss_pred             ccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeeeccCCcccc-cc-hhhcCCCcccEEec
Q 038877           31 LVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLDLSWTRIRG-LP-QELKALEKLRYLSL  107 (298)
Q Consensus        31 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l  107 (298)
                      .++++.++..+..+|..+   .++++.|++++| .+..+|. .|.++++|++|++++|.+.. ++ ..+..+++++++.+
T Consensus        10 ~~~i~c~~~~l~~iP~~l---~~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDL---PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SSEEEEESCSCSSCCSCS---CSCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CCEEEEeCCCCCCcCCCC---CCCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            367888888888888763   257999999999 8888865 68899999999999997764 43 45788999999988


Q ss_pred             cCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccc
Q 038877          108 EGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPK  187 (298)
Q Consensus       108 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~  187 (298)
                      ..++.....+...+.++++|+++++.++.+..              ......+..++.+..+.........+.. .....
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~--------------~~~~~~~~~l~~l~~~~~~n~~l~~i~~-~~~~~  150 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKH--------------LPDVHKIHSLQKVLLDIQDNINIHTIER-NSFVG  150 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCCS--------------CCCCTTTCBSSCEEEEEESCTTCCEECT-TSSTT
T ss_pred             cccccccccccccccccccccccccchhhhcc--------------cccccccccccccccccccccccccccc-ccccc
Confidence            76555666665568999999999999998732              1111223333444443333333222221 11122


Q ss_pred             cccceeEEEEeccCCCCcccccccccccccceec-ccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchhhhh
Q 038877          188 LLSITQSVGVYFCQSPPLNVLHLAYMENLQELVI-LNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWLV  266 (298)
Q Consensus       188 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l-~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~  266 (298)
                      ....+..+++.++......... ...+++.++.. .++.+..++...+        .++++|+.|+++++ .++.++. .
T Consensus       151 ~~~~l~~L~l~~n~l~~i~~~~-~~~~~l~~~~~l~~n~l~~l~~~~f--------~~l~~L~~L~Ls~N-~l~~l~~-~  219 (242)
T d1xwdc1         151 LSFESVILWLNKNGIQEIHNCA-FNGTQLDELNLSDNNNLEELPNDVF--------HGASGPVILDISRT-RIHSLPS-Y  219 (242)
T ss_dssp             SBSSCEEEECCSSCCCEECTTT-TTTCCEEEEECTTCTTCCCCCTTTT--------TTSCCCSEEECTTS-CCCCCCS-S
T ss_pred             ccccceeeeccccccccccccc-ccchhhhccccccccccccccHHHh--------cCCCCCCEEECCCC-cCCccCH-H
Confidence            3346778888877654333332 34456666654 5555555665555        57899999999998 6887753 3


Q ss_pred             hcCCCcEEEeecCccccccccc
Q 038877          267 FAQNLKELRIDSCYDVEEIISV  288 (298)
Q Consensus       267 ~~~~L~~L~l~~c~~l~~~~~~  288 (298)
                      .+.+|..|..-++..++++|..
T Consensus       220 ~~~~l~~L~~l~~~~l~~lp~~  241 (242)
T d1xwdc1         220 GLENLKKLRARSTYNLKKLPTL  241 (242)
T ss_dssp             SCTTCCEEESSSEESSSCSCCC
T ss_pred             HHcCCcccccCcCCCCCcCCCC
Confidence            3556666665556666676654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=2.1e-15  Score=106.93  Aligned_cols=118  Identities=20%  Similarity=0.289  Sum_probs=80.0

Q ss_pred             cEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcc
Q 038877           10 KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRI   89 (298)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~   89 (298)
                      |+|++++|.++.++.+..+++|++|++++|.+..+|.. +..+++|++|++++| .++.+| .++.+++|+++++++|.+
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhh-hhhhhcccccccccc-cccccC-ccccccccCeEECCCCcc
Confidence            56777788777777777777788888887777777665 677777888888877 777665 367777777777777777


Q ss_pred             cccc--hhhcCCCcccEEeccCCccC--CCCchhhhcCCCcccEE
Q 038877           90 RGLP--QELKALEKLRYLSLEGTRHL--SIIPHQLISGFSKLEVL  130 (298)
Q Consensus        90 ~~l~--~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~l~~L~~L  130 (298)
                      ..++  ..+..+++|+++++++|...  ...+......+|+|+.+
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            7555  34667777777777776432  12223334445555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=8.7e-16  Score=114.35  Aligned_cols=104  Identities=19%  Similarity=0.257  Sum_probs=48.4

Q ss_pred             ccCCCccEEEeecCCCcCCCCC-CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCcc-ccCccCCCe
Q 038877            4 EEWEGAKRISLMKTGIQSPSEI-PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSLHH   81 (298)
Q Consensus         4 ~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~   81 (298)
                      ..+.+++.|++++|.++.++.+ ..+++|+.|++++|.+..++.  +..+++|++|++++| .+..+++. +..+++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccc-cccCCCcccccccccccc
Confidence            3344455555555555554433 334455555555554444432  444455555555555 44444332 233445555


Q ss_pred             eeccCCcccccch--hhcCCCcccEEeccCC
Q 038877           82 LDLSWTRIRGLPQ--ELKALEKLRYLSLEGT  110 (298)
Q Consensus        82 L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~  110 (298)
                      |++++|.+..++.  .+..+++|+++++.+|
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             ceeccccccccccccccccccccchhhcCCC
Confidence            5555554444332  2344444555554444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.6e-14  Score=102.40  Aligned_cols=102  Identities=22%  Similarity=0.239  Sum_probs=87.3

Q ss_pred             cEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEEeccCCc
Q 038877           32 VTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTR  111 (298)
Q Consensus        32 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~  111 (298)
                      |+|++++|.++.++.  ++.+++|++|++++| .++.+|+.++.+++|++|++++|.++.++ .+..+++|+++++++|.
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCCC-ccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCc
Confidence            579999999987765  788999999999999 88999888999999999999999999886 48899999999999984


Q ss_pred             cCCCCch-hhhcCCCcccEEEeeccCCc
Q 038877          112 HLSIIPH-QLISGFSKLEVLRLLWCGLW  138 (298)
Q Consensus       112 ~~~~~~~-~~~~~l~~L~~L~l~~~~~~  138 (298)
                       +..++. ..++.+++|+.+++++|.+.
T Consensus        77 -i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 -LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             -CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             -cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence             444442 33788999999999998874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.54  E-value=2.3e-13  Score=113.70  Aligned_cols=240  Identities=18%  Similarity=0.170  Sum_probs=150.2

Q ss_pred             CCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeecc
Q 038877            6 WEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLS   85 (298)
Q Consensus         6 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~   85 (298)
                      .++|++|++++|.++.+|..  +.+|+.|++.+|.+..++.-    .+.|++|++++| .+..+|. ++.+.+|++|+++
T Consensus        57 ~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~l----p~~L~~L~L~~n-~l~~lp~-~~~l~~L~~L~l~  128 (353)
T d1jl5a_          57 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNN-QLEKLPE-LQNSSFLKIIDVD  128 (353)
T ss_dssp             CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSS-CCSSCCC-CTTCTTCCEEECC
T ss_pred             CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhhh----cccccccccccc-ccccccc-hhhhccceeeccc
Confidence            46899999999999998865  56899999999988766531    246999999999 8888875 5788999999998


Q ss_pred             CCcccccc-------------------hhhcCCCcccEEeccCCccCC-------------------CCchhhhcCCCcc
Q 038877           86 WTRIRGLP-------------------QELKALEKLRYLSLEGTRHLS-------------------IIPHQLISGFSKL  127 (298)
Q Consensus        86 ~~~~~~l~-------------------~~~~~l~~L~~L~l~~~~~~~-------------------~~~~~~~~~l~~L  127 (298)
                      ++.+...+                   ..+..++.++.+.+.++....                   .++.  ...++.|
T Consensus       129 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~l~~L  206 (353)
T d1jl5a_         129 NNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE--LQNLPFL  206 (353)
T ss_dssp             SSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC--CTTCTTC
T ss_pred             cccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccccc--ccccccc
Confidence            87655322                   124455667777766553211                   1222  4567888


Q ss_pred             cEEEeeccCCcccccc----ccccccccCchhHHHhhcCCCCccEEEEEecCccchh--------------hhccccccc
Q 038877          128 EVLRLLWCGLWSRKEQ----EEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQ--------------KFLKYPKLL  189 (298)
Q Consensus       128 ~~L~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~--------------~~~~~~~~~  189 (298)
                      +.+++++|........    ....+......   ......+.+...++..+....+.              .+......+
T Consensus       207 ~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  283 (353)
T d1jl5a_         207 TTIYADNNLLKTLPDLPPSLEALNVRDNYLT---DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP  283 (353)
T ss_dssp             CEEECCSSCCSSCCSCCTTCCEEECCSSCCS---CCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCC
T ss_pred             ccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccchhcccccccCccccccccC
Confidence            9999887765331110    00000000000   00011122333333222211111              111122345


Q ss_pred             cceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchhhhhhcC
Q 038877          190 SITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQ  269 (298)
Q Consensus       190 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~  269 (298)
                      ++|++|++++|......    ..+++|+.|++++|.+.+++            ..+++|++|++++| .++.+|.  ..+
T Consensus       284 ~~L~~L~Ls~N~l~~lp----~~~~~L~~L~L~~N~L~~l~------------~~~~~L~~L~L~~N-~L~~lp~--~~~  344 (353)
T d1jl5a_         284 PSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVP------------ELPQNLKQLHVEYN-PLREFPD--IPE  344 (353)
T ss_dssp             TTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCC------------CCCTTCCEEECCSS-CCSSCCC--CCT
T ss_pred             CCCCEEECCCCccCccc----cccCCCCEEECCCCcCCccc------------cccCCCCEEECcCC-cCCCCCc--ccc
Confidence            78999999999654332    23689999999999876642            23578999999999 4888863  345


Q ss_pred             CCcEEEee
Q 038877          270 NLKELRID  277 (298)
Q Consensus       270 ~L~~L~l~  277 (298)
                      .|+.|.+.
T Consensus       345 ~L~~L~~~  352 (353)
T d1jl5a_         345 SVEDLRMN  352 (353)
T ss_dssp             TCCEEECC
T ss_pred             ccCeeECc
Confidence            78888764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.5e-15  Score=110.39  Aligned_cols=138  Identities=19%  Similarity=0.210  Sum_probs=108.2

Q ss_pred             CcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchh-hc
Q 038877           19 IQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQE-LK   97 (298)
Q Consensus        19 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~-~~   97 (298)
                      +...|.+..+.++++|++++|.++.++.. +..+++|++|++++| .+..++ ++..+++|++|++++|.++.++.. +.
T Consensus         8 i~~~~~~~n~~~lr~L~L~~n~I~~i~~~-~~~l~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~   84 (162)
T d1a9na_           8 IEQAAQYTNAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQ   84 (162)
T ss_dssp             HHTSCEEECTTSCEEEECTTSCCCSCCCG-GGGTTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred             HhhhHhccCcCcCcEEECCCCCCCccCcc-ccccccCCEEECCCC-CCCccC-CcccCcchhhhhcccccccCCCccccc
Confidence            33455556788999999999999988754 678999999999999 888885 578899999999999999988754 56


Q ss_pred             CCCcccEEeccCCccCCCCch-hhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEE
Q 038877           98 ALEKLRYLSLEGTRHLSIIPH-QLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWS  172 (298)
Q Consensus        98 ~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~  172 (298)
                      .+++|++|++++|. +..++. ..+..+++|+++++++|.+..            ........+..+++|+.|+-.
T Consensus        85 ~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i~~------------~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          85 ALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTN------------KKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             HCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGG------------STTHHHHHHHHCTTCSEETTE
T ss_pred             cccccccceecccc-ccccccccccccccccchhhcCCCcccc------------ccchHHHHHHHCCCcCeeCCC
Confidence            79999999999994 455543 337899999999999998843            011123456678888888644

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.51  E-value=6.6e-14  Score=107.20  Aligned_cols=128  Identities=20%  Similarity=0.285  Sum_probs=106.7

Q ss_pred             CccEEEeecCCCcCCCCCCCCCcccEEEecCCccc-ccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeecc
Q 038877            8 GAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLS   85 (298)
Q Consensus         8 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~   85 (298)
                      ..+.++.+++.++.+|... .+++++|++++|.++ .++...|..+++|+.|++++| .+..+ +..+..+++|++|+++
T Consensus         9 ~~~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEEeCCCcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeecccc-ccccccccccccccccceeeec
Confidence            3568899999999887532 378999999999997 455556899999999999999 66655 5678889999999999


Q ss_pred             CCcccccch-hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCc
Q 038877           86 WTRIRGLPQ-ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLW  138 (298)
Q Consensus        86 ~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  138 (298)
                      +|.++.++. .+..+++|++|++++| .++.++.+.+.++++|+++++++|.+.
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccccCHHHHhCCCcccccccCCc-cccccCHHHhcCCcccccccccccccc
Confidence            999998764 5888999999999999 567777777899999999999998873

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.41  E-value=2.4e-13  Score=113.72  Aligned_cols=241  Identities=14%  Similarity=0.035  Sum_probs=159.3

Q ss_pred             CCCCcccEEEecCCccccc----CchHHhcCCCccEEEccCCcCCcc-----------CCccccCccCCCeeeccCCccc
Q 038877           26 PTCPRLVTFLLDGNWIEEI----TDGFFRSMSSLRVLSLRRNLALSK-----------LPSGISNLVSLHHLDLSWTRIR   90 (298)
Q Consensus        26 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~-----------~p~~~~~l~~L~~L~l~~~~~~   90 (298)
                      .....+++|++++|.++..    ....+...++|+.++++++ ....           +...+..+++|++|++++|.+.
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCC-cccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            5578888899998877621    1222566788889988876 4331           1223456788999999988766


Q ss_pred             c-----cchhhcCCCcccEEeccCCccCCC----Cchh--------hhcCCCcccEEEeeccCCccccccccccccccCc
Q 038877           91 G-----LPQELKALEKLRYLSLEGTRHLSI----IPHQ--------LISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDA  153 (298)
Q Consensus        91 ~-----l~~~~~~l~~L~~L~l~~~~~~~~----~~~~--------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  153 (298)
                      .     +...+...++|++|++++|.....    +...        .....+.|+.+.++++.+..           ...
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~-----------~~~  175 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-----------GSM  175 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-----------GGH
T ss_pred             cccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccc-----------ccc
Confidence            2     445566788899999988743211    0000        02356788999998887732           113


Q ss_pred             hhHHHhhcCCCCccEEEEEecCccch---hhhccccccccceeEEEEeccCCCCcc----cccccccccccceecccCCc
Q 038877          154 EPLMKELLGLKHLNVLSWSLHSSLAV---QKFLKYPKLLSITQSVGVYFCQSPPLN----VLHLAYMENLQELVILNSDL  226 (298)
Q Consensus       154 ~~~~~~l~~l~~L~~l~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~  226 (298)
                      ..+...+...+.|+.++++.+.....   ..+.......+.|+.|++++|......    ...+...++|++|++++|.+
T Consensus       176 ~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i  255 (344)
T d2ca6a1         176 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  255 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             ccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCcc
Confidence            34556677788999999988776431   123334456678999999988653322    23467789999999999987


Q ss_pred             ceeeecchhhhhccccccCCcccEEeccCCCCCCchh------hh-hhcCCCcEEEeecCcc
Q 038877          227 EEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT------WL-VFAQNLKELRIDSCYD  281 (298)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~------~l-~~~~~L~~L~l~~c~~  281 (298)
                      ...++..+.  ..+.....+.|+.|++++| .+++-.      .+ ..++.|++|++.++..
T Consensus       256 ~~~g~~~l~--~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         256 SARGAAAVV--DAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             CHHHHHHHH--HHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             CchhhHHHH--HHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            764444442  1222234678999999999 576632      22 3578999999998754

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.36  E-value=1.1e-14  Score=112.02  Aligned_cols=107  Identities=28%  Similarity=0.329  Sum_probs=55.7

Q ss_pred             CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEE
Q 038877           26 PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYL  105 (298)
Q Consensus        26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L  105 (298)
                      ..+++|++|++++|.++.++.  +..+++|++|++++| .++.+|.....+++|++|++++|.++.++ .+..+++|++|
T Consensus        45 ~~L~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L  120 (198)
T d1m9la_          45 STLKACKHLALSTNNIEKISS--LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL  120 (198)
T ss_dssp             HHTTTCCEEECSEEEESCCCC--HHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEE
T ss_pred             hcccccceeECcccCCCCccc--ccCCccccChhhccc-ccccccccccccccccccccccccccccc-ccccccccccc
Confidence            445555566665555555442  555555666666555 55555444444445555555555555443 24455555555


Q ss_pred             eccCCccCCCCch-hhhcCCCcccEEEeeccCC
Q 038877          106 SLEGTRHLSIIPH-QLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus       106 ~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~  137 (298)
                      ++++| .++.++. ..+..+++|+.|++++|.+
T Consensus       121 ~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         121 YMSNN-KITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EESEE-ECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccc-hhccccccccccCCCccceeecCCCcc
Confidence            55555 2233321 1245555555555555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.35  E-value=4.8e-15  Score=114.05  Aligned_cols=126  Identities=25%  Similarity=0.320  Sum_probs=104.1

Q ss_pred             cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877            3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL   82 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L   82 (298)
                      ++.+++|++|++++|.++.++.+..+++|++|++++|.+..++.. ...+++|++|++++| .++.++ .+..+++|++|
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~-~~~~~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L  120 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYN-QIASLS-GIEKLVNLRVL  120 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSH-HHHHHHCCEEECSEE-ECCCHH-HHHHHHHSSEE
T ss_pred             HhcccccceeECcccCCCCcccccCCccccChhhccccccccccc-ccccccccccccccc-cccccc-ccccccccccc
Confidence            567899999999999999998888999999999999999888764 566778999999999 888774 47889999999


Q ss_pred             eccCCcccccc--hhhcCCCcccEEeccCCccCCCCch---------hhhcCCCcccEEE
Q 038877           83 DLSWTRIRGLP--QELKALEKLRYLSLEGTRHLSIIPH---------QLISGFSKLEVLR  131 (298)
Q Consensus        83 ~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~---------~~~~~l~~L~~L~  131 (298)
                      ++++|.++.++  ..+..+++|+.|++++|......+.         .++.++|+|+.||
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            99999999776  4588999999999999854322111         1256788888876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.33  E-value=1.5e-12  Score=99.44  Aligned_cols=128  Identities=18%  Similarity=0.208  Sum_probs=101.9

Q ss_pred             cccEEEecCCcccccCchHHhcCCCccEEEccCCcCCcc-C-CccccCccCCCeeeccCCcccccc-hhhcCCCcccEEe
Q 038877           30 RLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSK-L-PSGISNLVSLHHLDLSWTRIRGLP-QELKALEKLRYLS  106 (298)
Q Consensus        30 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~-p~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~  106 (298)
                      ..++++.+++.+..+|.. +  .+++++|++++| .++. + +..|+.+++|++|++++|.+..++ ..+..+++|++|+
T Consensus         9 ~~~~v~Cs~~~L~~iP~~-l--p~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRD-I--PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             ETTEEECTTSCCSSCCSC-C--CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEEeCCCcCccCCC-C--CCCCCEEEeCCC-CCcccccccccCCCceEeeeeccccccccccccccccccccceee
Confidence            356788998888888876 3  368999999999 7763 4 446788999999999999888554 5688899999999


Q ss_pred             ccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCcc
Q 038877          107 LEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSL  177 (298)
Q Consensus       107 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~  177 (298)
                      +++| .+..++.+.+.++++|++|++++|.+..               ..+..+..+++|+.++++++...
T Consensus        85 Ls~N-~l~~l~~~~F~~l~~L~~L~L~~N~l~~---------------i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          85 LGEN-KIKEISNKMFLGLHQLKTLNLYDNQISC---------------VMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSC-CCCEECSSSSTTCTTCCEEECCSSCCCE---------------ECTTSSTTCTTCCEEECTTCCBC
T ss_pred             eccc-cccccCHHHHhCCCcccccccCCccccc---------------cCHHHhcCCcccccccccccccc
Confidence            9999 5567776668999999999999999843               33455777888888888776653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.29  E-value=1.3e-12  Score=109.21  Aligned_cols=241  Identities=16%  Similarity=0.118  Sum_probs=163.5

Q ss_pred             cccCCCccEEEeecCCCcC-----CC-CCCCCCcccEEEecCCcccc----cC------chHHhcCCCccEEEccCCcCC
Q 038877            3 VEEWEGAKRISLMKTGIQS-----PS-EIPTCPRLVTFLLDGNWIEE----IT------DGFFRSMSSLRVLSLRRNLAL   66 (298)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~~~~~~----~~------~~~~~~~~~L~~L~l~~~~~~   66 (298)
                      +.....|+.|++++|.+..     +. .+...++|+.++++++....    .+      ...+..+++|+.|++++| .+
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n-~i  105 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AF  105 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc-cc
Confidence            4567889999999998754     22 45778999999999875431    11      122566899999999999 65


Q ss_pred             cc-----CCccccCccCCCeeeccCCcccc-----cch---------hhcCCCcccEEeccCCccCCC----CchhhhcC
Q 038877           67 SK-----LPSGISNLVSLHHLDLSWTRIRG-----LPQ---------ELKALEKLRYLSLEGTRHLSI----IPHQLISG  123 (298)
Q Consensus        67 ~~-----~p~~~~~l~~L~~L~l~~~~~~~-----l~~---------~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~  123 (298)
                      ..     +...+..+++|++|++++|.+..     +..         .....+.|+.+.++++.....    +.. .+..
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~-~l~~  184 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK-TFQS  184 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH-HHHH
T ss_pred             ccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccc-hhhh
Confidence            53     34455678899999999987651     111         124567899999988743322    112 2567


Q ss_pred             CCcccEEEeeccCCccccccccccccccC-chhHHHhhcCCCCccEEEEEecCccc--hhhhccccccccceeEEEEecc
Q 038877          124 FSKLEVLRLLWCGLWSRKEQEEGSVLYDD-AEPLMKELLGLKHLNVLSWSLHSSLA--VQKFLKYPKLLSITQSVGVYFC  200 (298)
Q Consensus       124 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~  200 (298)
                      .++|+.|++++|.+..           .+ ...+...+..+++|+.|++++|....  ...+.......++|++|++++|
T Consensus       185 ~~~L~~L~L~~n~i~~-----------~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRP-----------EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             CTTCCEEECCSSCCCH-----------HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             hhhhcccccccccccc-----------cccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence            8899999999998842           00 01134557788999999999887643  2334444556788999999999


Q ss_pred             CCCCccccc----cc--ccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCC
Q 038877          201 QSPPLNVLH----LA--YMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAK  260 (298)
Q Consensus       201 ~~~~~~~~~----l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  260 (298)
                      ...+.....    +.  ..+.|++|++++|.+...++..+..  .+. ...+.|++|+++++ .+.
T Consensus       254 ~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~--~l~-~~~~~L~~L~l~~N-~~~  315 (344)
T d2ca6a1         254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT--VID-EKMPDLLFLELNGN-RFS  315 (344)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH--HHH-HHCTTCCEEECTTS-BSC
T ss_pred             ccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHH--HHH-ccCCCCCEEECCCC-cCC
Confidence            765443333    32  2467999999999876544333311  011 24789999999998 443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.7e-11  Score=90.09  Aligned_cols=109  Identities=18%  Similarity=0.297  Sum_probs=65.3

Q ss_pred             CCcccCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCC-cccccCchHHhcCCCccEEEccCCcCCccC-CccccCcc
Q 038877            1 PKVEEWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGN-WIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLV   77 (298)
Q Consensus         1 ~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~   77 (298)
                      |+.+.+.....++..++.+.+.| .+..+++|++|++.++ .++.++...|..+++|+.|++++| .++.+ |.+|..++
T Consensus         2 P~~C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~   80 (156)
T d2ifga3           2 PDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTP   80 (156)
T ss_dssp             CSSSCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCS
T ss_pred             cCCCCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccc
Confidence            44555555666666666665544 4455666666666554 466665555666666666666666 66655 34566666


Q ss_pred             CCCeeeccCCcccccchhhcCCCcccEEeccCC
Q 038877           78 SLHHLDLSWTRIRGLPQELKALEKLRYLSLEGT  110 (298)
Q Consensus        78 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~  110 (298)
                      +|++|+|++|.++.++.......+|+.|++++|
T Consensus        81 ~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          81 RLSRLNLSFNALESLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             CCCEEECCSSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred             cccceeccCCCCcccChhhhccccccccccCCC
Confidence            666666666666666554444445556665555

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=5.1e-13  Score=115.40  Aligned_cols=120  Identities=20%  Similarity=0.137  Sum_probs=68.1

Q ss_pred             HHhhcCCCCccEEEEEecCccc--hhhhcc-ccccccceeEEEEeccCCCCcccccc----cccccccceecccCCccee
Q 038877          157 MKELLGLKHLNVLSWSLHSSLA--VQKFLK-YPKLLSITQSVGVYFCQSPPLNVLHL----AYMENLQELVILNSDLEEM  229 (298)
Q Consensus       157 ~~~l~~l~~L~~l~l~~~~~~~--~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~~~~  229 (298)
                      ...+...+.++.++++.+....  ...+.. .......++.+.+.++.........+    ...+.|++|++++|.+...
T Consensus       276 ~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~  355 (460)
T d1z7xw1         276 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA  355 (460)
T ss_dssp             HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred             cccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCc
Confidence            3444556666666666554422  111111 11223467788888776544333333    3456788888888876553


Q ss_pred             eecchhhhhccccccCCcccEEeccCCCCCCchh------hhhhcCCCcEEEeecCc
Q 038877          230 KIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT------WLVFAQNLKELRIDSCY  280 (298)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~------~l~~~~~L~~L~l~~c~  280 (298)
                      ++..+.+  .+. ...+.|+.|++++| .+++..      .+..+++|++|+|+++.
T Consensus       356 g~~~l~~--~l~-~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~  408 (460)
T d1z7xw1         356 GVRELCQ--GLG-QPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC  408 (460)
T ss_dssp             HHHHHHH--HHT-STTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             ccchhhh--hhh-cccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECCCCc
Confidence            3322211  000 23567889999988 677632      24567889999988873

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.4e-10  Score=83.72  Aligned_cols=109  Identities=16%  Similarity=0.110  Sum_probs=88.1

Q ss_pred             CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeeeccCCcccccc-hhhcCCCccc
Q 038877           26 PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLDLSWTRIRGLP-QELKALEKLR  103 (298)
Q Consensus        26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~  103 (298)
                      ..+....+++.+++.+.+++.. +..+++|+.|+++++..++.++ ..|.++++|+.|++++|.++.++ ..+..+++|+
T Consensus         5 C~c~~~~~l~c~~~~~~~~p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             SCCSSSSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             CCcCCCCeEEecCCCCccCccc-ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccc
Confidence            4455667788888877777766 7788999999998764687775 46889999999999999999875 5688999999


Q ss_pred             EEeccCCccCCCCchhhhcCCCcccEEEeeccCC
Q 038877          104 YLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus       104 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  137 (298)
                      +|++++| .+..++.+.+.. .+|+.|++++|.+
T Consensus        84 ~L~Ls~N-~l~~l~~~~~~~-~~l~~L~L~~Np~  115 (156)
T d2ifga3          84 RLNLSFN-ALESLSWKTVQG-LSLQELVLSGNPL  115 (156)
T ss_dssp             EEECCSS-CCSCCCSTTTCS-CCCCEEECCSSCC
T ss_pred             ceeccCC-CCcccChhhhcc-ccccccccCCCcc
Confidence            9999999 567888774544 4699999999887

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.3e-11  Score=104.77  Aligned_cols=103  Identities=21%  Similarity=0.297  Sum_probs=63.3

Q ss_pred             CccEEEeecCCCcC--CCC-CCCCCcccEEEecCCccccc----CchHHhcCCCccEEEccCCcCCcc-----CCcccc-
Q 038877            8 GAKRISLMKTGIQS--PSE-IPTCPRLVTFLLDGNWIEEI----TDGFFRSMSSLRVLSLRRNLALSK-----LPSGIS-   74 (298)
Q Consensus         8 ~L~~L~l~~~~~~~--~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~-----~p~~~~-   74 (298)
                      +|+.|+++++.+++  +.. +..++++++|++.+|.+++.    -..++..+++|++|++++| .++.     +...+. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHhc
Confidence            56777787777766  222 25567777788887766521    1223567777888888777 5542     122221 


Q ss_pred             CccCCCeeeccCCcccc-----cchhhcCCCcccEEeccCCc
Q 038877           75 NLVSLHHLDLSWTRIRG-----LPQELKALEKLRYLSLEGTR  111 (298)
Q Consensus        75 ~l~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~  111 (298)
                      ...+|++|++++|.++.     ++..+..+++|++|++++|.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             CCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence            22467788887777652     33456677777888777763

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=9.2e-08  Score=70.07  Aligned_cols=82  Identities=24%  Similarity=0.208  Sum_probs=52.6

Q ss_pred             HhcCCCccEEEccCCcCCccCC---ccccCccCCCeeeccCCcccccchh-hcCCCcccEEeccCCccCCCCch------
Q 038877           49 FRSMSSLRVLSLRRNLALSKLP---SGISNLVSLHHLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPH------  118 (298)
Q Consensus        49 ~~~~~~L~~L~l~~~~~~~~~p---~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~------  118 (298)
                      +..+++|++|++++| .++.++   ..+..+++|+.|++++|.++.+++. .....+|+.+++.+|........      
T Consensus        61 ~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          61 EENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HHhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            567888888888888 776553   3456678888888888887766642 23344677788877744332221      


Q ss_pred             hhhcCCCcccEEE
Q 038877          119 QLISGFSKLEVLR  131 (298)
Q Consensus       119 ~~~~~l~~L~~L~  131 (298)
                      .++..+|+|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            2245566666664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2e-06  Score=62.65  Aligned_cols=79  Identities=19%  Similarity=0.219  Sum_probs=62.4

Q ss_pred             CCCcccEEEecCCcccccC--chHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeeeccCCcccccc--------hh
Q 038877           27 TCPRLVTFLLDGNWIEEIT--DGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLDLSWTRIRGLP--------QE   95 (298)
Q Consensus        27 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~l~--------~~   95 (298)
                      .+++|++|++++|.++.+.  ...+..+++|+.|++++| .++.+++ ......+|+.+++.+|.+....        ..
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            5889999999999998654  234788999999999999 8887765 2334467999999999886321        34


Q ss_pred             hcCCCcccEEe
Q 038877           96 LKALEKLRYLS  106 (298)
Q Consensus        96 ~~~l~~L~~L~  106 (298)
                      +..+|+|++||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            67889999997

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.00  E-value=3e-06  Score=62.07  Aligned_cols=109  Identities=14%  Similarity=0.097  Sum_probs=58.7

Q ss_pred             CCCcccEEEecCC-cccc--cC--chHHhcCCCccEEEccCCcCCc-----cCCccccCccCCCeeeccCCccc-----c
Q 038877           27 TCPRLVTFLLDGN-WIEE--IT--DGFFRSMSSLRVLSLRRNLALS-----KLPSGISNLVSLHHLDLSWTRIR-----G   91 (298)
Q Consensus        27 ~~~~L~~L~l~~~-~~~~--~~--~~~~~~~~~L~~L~l~~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~-----~   91 (298)
                      ..+.|++|+++++ .++.  +.  ..++...+.|+.|++++| .+.     .+...+...+.|++|++++|.++     .
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            3466666666653 3441  11  112555566777777776 454     12233444566777777777665     1


Q ss_pred             cchhhcCCCcccEEeccCCccCCC-------CchhhhcCCCcccEEEeeccCC
Q 038877           92 LPQELKALEKLRYLSLEGTRHLSI-------IPHQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus        92 l~~~~~~l~~L~~L~l~~~~~~~~-------~~~~~~~~l~~L~~L~l~~~~~  137 (298)
                      +...+...++|++|++.++.....       +.. .+..-++|+.|+++.+..
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~-~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHH-HHHhCCCccEeeCcCCCc
Confidence            234456666777777766522111       111 244556777777766543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.82  E-value=7.9e-06  Score=59.73  Aligned_cols=118  Identities=14%  Similarity=0.043  Sum_probs=72.7

Q ss_pred             HhcCCCccEEEccCCcCCc-----cCCccccCccCCCeeeccCCccc-----ccchhhcCCCcccEEeccCCccCCCCch
Q 038877           49 FRSMSSLRVLSLRRNLALS-----KLPSGISNLVSLHHLDLSWTRIR-----GLPQELKALEKLRYLSLEGTRHLSIIPH  118 (298)
Q Consensus        49 ~~~~~~L~~L~l~~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~  118 (298)
                      ....++|+.|+++++..++     .+...+....+|++|++++|.+.     .+...+...+.|++|++++|.....-..
T Consensus        11 ~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          11 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHH
Confidence            4456889999998753454     12334666778888888888776     2334566677888888888843322111


Q ss_pred             ---hhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEec
Q 038877          119 ---QLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLH  174 (298)
Q Consensus       119 ---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~  174 (298)
                         ..+...++|++|++++|....        +.......+...+...+.|+.++++++
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~--------~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSV--------LGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCC--------CCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHhCCcCCEEECCCCcCCC--------ccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence               125566778888887765421        001112335566666777877777654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.56  E-value=2.5e-05  Score=56.85  Aligned_cols=110  Identities=15%  Similarity=0.145  Sum_probs=62.0

Q ss_pred             CCCCcccEEEecCC-ccc--cc--CchHHhcCCCccEEEccCCcCCc-----cCCccccCccCCCeeeccCCccc-----
Q 038877           26 PTCPRLVTFLLDGN-WIE--EI--TDGFFRSMSSLRVLSLRRNLALS-----KLPSGISNLVSLHHLDLSWTRIR-----   90 (298)
Q Consensus        26 ~~~~~L~~L~l~~~-~~~--~~--~~~~~~~~~~L~~L~l~~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~-----   90 (298)
                      ...+.|++|+++++ .++  .+  ...++...++|++|++++| .++     .+...+.....++.++++++.+.     
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            34567777777763 454  11  1222456677777777777 554     22334455667777777777655     


Q ss_pred             ccchhhcCCCcccEEeccCCc-cCCC-----CchhhhcCCCcccEEEeeccCC
Q 038877           91 GLPQELKALEKLRYLSLEGTR-HLSI-----IPHQLISGFSKLEVLRLLWCGL  137 (298)
Q Consensus        91 ~l~~~~~~l~~L~~L~l~~~~-~~~~-----~~~~~~~~l~~L~~L~l~~~~~  137 (298)
                      .+...+...++|+.+++..+. .++.     +.. .+...+.|+.|+++.+..
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~-~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHH-HHHhCCCcCEEeCcCCCC
Confidence            233456666777766654331 1211     222 245677788888776554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.50  E-value=3.9e-05  Score=55.76  Aligned_cols=117  Identities=14%  Similarity=0.109  Sum_probs=77.2

Q ss_pred             hHHhcCCCccEEEccCCcCCc-----cCCccccCccCCCeeeccCCccc-----ccchhhcCCCcccEEeccCCccCCC-
Q 038877           47 GFFRSMSSLRVLSLRRNLALS-----KLPSGISNLVSLHHLDLSWTRIR-----GLPQELKALEKLRYLSLEGTRHLSI-  115 (298)
Q Consensus        47 ~~~~~~~~L~~L~l~~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~-  115 (298)
                      ......++|+.|+++++..++     .+..++...++|++|++++|.++     .+...+...+.++.+++.+|..... 
T Consensus        11 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          11 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG   90 (166)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh
Confidence            335567899999998753554     23445667789999999999876     2345567778899999988743322 


Q ss_pred             ---CchhhhcCCCcccEEEee--ccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecC
Q 038877          116 ---IPHQLISGFSKLEVLRLL--WCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHS  175 (298)
Q Consensus       116 ---~~~~~~~~l~~L~~L~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~  175 (298)
                         +.. .+...++|+.+++.  +|.+..           .+...+...+...+.|+.|++..+.
T Consensus        91 ~~~l~~-~l~~~~~L~~l~L~l~~n~i~~-----------~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          91 ILALVE-ALQSNTSLIELRIDNQSQPLGN-----------NVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHH-GGGGCSSCCEEECCCCSSCCCH-----------HHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHH-HHHhCccccEEeeccCCCcCcH-----------HHHHHHHHHHHhCCCcCEEeCcCCC
Confidence               112 25667788877665  344421           1133456677778888888886554