Citrus Sinensis ID: 038880

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
GFYEQVKELRERCKQLPAEYFVVLVGDMITEEALPTYQTMLNTIDGVRDETGASLTSWATWIRYLYLSGCVDMKQIERSIQYLIRSGMDPKFENNPYNGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHELAYTKIVEKLFEIDPDDAILALAGMMKKTIKMPAHLMYDGQNDKIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLMGLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKACSTVPFSWVFGKDIRV
cHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccccccccc
cHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccEEEEEccEEEc
GFYEQVKELRERCKQLPAEYFVVLVGDmiteealpTYQTMLNTIDGVRDETGASLTSWATWIRYLYLSGCVDMKQIERSIQYLIRsgmdpkfennpyngfiytSFQERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHELAYTKIVEKLFEIDPDDAILALAGMMKKTIKmpahlmydgqndkIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLMgltsegrkardfvcglpSRIRRLEDKAQANMAKKAcstvpfswvfgkdirv
GFYEQVKELRERCKQLPAEYFVVLVGDMITEEALPTYQTMLNTIDGVRDETGASLTSWATWIRYLYLSGCVDMKQIERSIQYLIRSGMDPKFENNPYNGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHELAYTKIVEKLFEIDPDDAILALAGMMKKTIKMPAHLMYDGQNDKIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLMgltsegrkardfvcgLPSRIRRLEDKAQANMakkacstvpfswvfgkdirv
GFYEQVKELRERCKQLPAEYFVVLVGDMITEEALPTYQTMLNTIDGVRDETGASLTSWATWIRYLYLSGCVDMKQIERSIQYLIRSGMDPKFENNPYNGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHELAYTKIVEKLFEIDPDDAILALAGMMKKTIKMPAHLMYDGQNDKIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLMGLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKACSTVPFSWVFGKDIRV
**********ERCKQLPAEYFVVLVGDMITEEALPTYQTMLNTIDGVRDETGASLTSWATWIRYLYLSGCVDMKQIERSIQYLIRSGMDPKFENNPYNGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHELAYTKIVEKLFEIDPDDAILALAGMMKKTIKMPAHLMYDGQNDKIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLMGLTSEGRKARDFVCGLPSRIRRLED***ANMAKKACSTVPFSWVFGK****
GFYEQVKELRERCKQLPAEYFVVLVGDMITEEALPTYQTMLNTIDGVRDETGASLTSWATWIRYLYLSGCVDMKQIERSIQYLIR**MDPKFENNPYNGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHELAYTKIVEKLFEIDPDDAILALAGMMKKTIKMPAHLMYDGQNDKIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLMGL***GRKARDFVCGLPSRIR*******************FSWVFGKDIRV
GFYEQVKELRERCKQLPAEYFVVLVGDMITEEALPTYQTMLNTIDGVRDETGASLTSWATWIRYLYLSGCVDMKQIERSIQYLIRSGMDPKFENNPYNGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHELAYTKIVEKLFEIDPDDAILALAGMMKKTIKMPAHLMYDGQNDKIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLMGLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKACSTVPFSWVFGKDIRV
GFYEQVKELRERCKQLPAEYFVVLVGDMITEEALPTYQTMLNTIDGVRDETGASLTSWATWIRYLYLSGCVDMKQIERSIQYLIRSGMDPKFENNPYNGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHELAYTKIVEKLFEIDPDDAILALAGMMKKTIKMPAHLMYDGQNDKIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLMGLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKACSTVPFSWVFGKDIRV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
GFYEQVKELRERCKQLPAEYFVVLVGDMITEEALPTYQTMLNTIDGVRDETGASLTSWATWIRYLYLSGCVDMKQIERSIQYLIRSGMDPKFENNPYNGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHELAYTKIVEKLFEIDPDDAILALAGMMKKTIKMPAHLMYDGQNDKIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLMGLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKACSTVPFSWVFGKDIRV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query276 2.2.26 [Sep-21-2011]
Q9M879396 Acyl-[acyl-carrier-protei yes no 0.996 0.694 0.738 1e-126
Q41319393 Acyl-[acyl-carrier-protei N/A no 0.992 0.697 0.738 1e-126
Q43593390 Acyl-[acyl-carrier-protei N/A no 0.992 0.702 0.725 1e-125
P46253393 Acyl-[acyl-carrier-protei N/A no 0.992 0.697 0.704 1e-121
P32061396 Acyl-[acyl-carrier-protei N/A no 0.992 0.691 0.697 1e-121
Q01753398 Acyl-[acyl-carrier-protei N/A no 0.992 0.688 0.707 1e-121
P22337396 Acyl-[acyl-carrier-protei N/A no 0.992 0.691 0.711 1e-121
Q42807411 Acyl-[acyl-carrier-protei yes no 0.981 0.659 0.718 1e-120
P22243396 Acyl-[acyl-carrier-protei N/A no 0.992 0.691 0.707 1e-120
P32062396 Acyl-[acyl-carrier-protei N/A no 0.985 0.686 0.712 1e-119
>sp|Q9M879|STAD5_ARATH Acyl-[acyl-carrier-protein] desaturase 5, chloroplastic OS=Arabidopsis thaliana GN=S-ACP-DES5 PE=1 SV=1 Back     alignment and function desciption
 Score =  452 bits (1163), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/291 (73%), Positives = 242/291 (83%), Gaps = 16/291 (5%)

Query: 1   GFYEQVKELRERCKQLPAEYFVVLVGDMITEEALPTYQTMLNTIDGVRDETGASLTSWAT 60
           GFY+QVKELRERCK+LP +YFVVLVGDMITEEALPTYQTMLNT+DGVRDETGAS T WA 
Sbjct: 107 GFYDQVKELRERCKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTPWAI 166

Query: 61  WIR---------------YLYLSGCVDMKQIERSIQYLIRSGMDPKFENNPYNGFIYTSF 105
           W R               YLYLSG VDM+QIE++IQYLI SGMDPK ENNPY GFIYTSF
Sbjct: 167 WTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPKTENNPYLGFIYTSF 226

Query: 106 QERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHELAYTKIVEKLFEIDPDDAILA 165
           QERATFISHGNTARLAK+ GD+KLAQICG IA+DE+RHE AYTKIVEKLFEIDPD  IL 
Sbjct: 227 QERATFISHGNTARLAKDRGDLKLAQICGTIAADERRHETAYTKIVEKLFEIDPDGTILG 286

Query: 166 LAGMMKKTIKMPAHLMYDGQNDKIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLM 225
           LA MMKK I MPAHLMYDGQ+D +F HFS VAQRLGVYTAKDYADIL FL+ERW VE L 
Sbjct: 287 LADMMKKKISMPAHLMYDGQDDNLFEHFSTVAQRLGVYTAKDYADILEFLVERWNVETLT 346

Query: 226 GLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKACSTVPFSWVFGKDIRV 276
            L+SEG +A+DFVCGLP+RIR++E++AQ   AK+A   +PFSW+FG++IR 
Sbjct: 347 DLSSEGHRAQDFVCGLPARIRKIEERAQGR-AKEAAKNIPFSWIFGRNIRA 396
Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 9EC: .EC: 2
>sp|Q41319|STAD_SOLCO Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum commersonii PE=2 SV=2 Back     alignment and function description
>sp|Q43593|STAD_OLEEU Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Olea europaea PE=2 SV=1 Back     alignment and function description
>sp|P46253|STAD_SOLTU Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|P32061|STAD_CUCSA Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Cucumis sativus PE=2 SV=1 Back     alignment and function description
>sp|Q01753|STAD_SIMCH Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Simmondsia chinensis PE=2 SV=1 Back     alignment and function description
>sp|P22337|STAD_RICCO Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Ricinus communis PE=1 SV=1 Back     alignment and function description
>sp|Q42807|STAD_SOYBN Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Glycine max GN=ACPD PE=2 SV=1 Back     alignment and function description
>sp|P22243|STAD_CARTI Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Carthamus tinctorius PE=1 SV=1 Back     alignment and function description
>sp|P32062|STAD_LINUS Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Linum usitatissimum PE=2 SV=1 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
TAIR|locus:2076969396 AT3G02630 [Arabidopsis thalian 0.992 0.691 0.741 1.4e-112
TAIR|locus:2181437394 AT5G16240 [Arabidopsis thalian 0.992 0.695 0.689 2.5e-106
TAIR|locus:2043899401 SSI2 "AT2G43710" [Arabidopsis 0.992 0.683 0.690 5.8e-105
TAIR|locus:2181427401 AT5G16230 [Arabidopsis thalian 0.996 0.685 0.649 5.6e-100
TAIR|locus:2029142391 FTM1 "FLORAL TRANSITION AT THE 0.996 0.703 0.646 3.8e-94
UNIPROTKB|E3PZS2376 SAD2 "Acyl-[acyl-carrier-prote 0.974 0.715 0.465 3e-69
UNIPROTKB|Q50824338 desA1 "Putative acyl-[acyl-car 0.742 0.606 0.251 4.3e-10
TAIR|locus:2076969 AT3G02630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
 Identities = 215/290 (74%), Positives = 242/290 (83%)

Query:     1 GFYEQVKELRERCKQLPAEYFVVLVGDMITEEALPTYQTMLNTIDGVRDETGASLTSWAT 60
             GFY+QVKELRERCK+LP +YFVVLVGDMITEEALPTYQTMLNT+DGVRDETGAS T WA 
Sbjct:   107 GFYDQVKELRERCKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTPWAI 166

Query:    61 WIR---------------YLYLSGCVDMKQIERSIQYLIRSGMDPKFENNPYNGFIYTSF 105
             W R               YLYLSG VDM+QIE++IQYLI SGMDPK ENNPY GFIYTSF
Sbjct:   167 WTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPKTENNPYLGFIYTSF 226

Query:   106 QERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHELAYTKIVEKLFEIDPDDAILA 165
             QERATFISHGNTARLAK+ GD+KLAQICG IA+DE+RHE AYTKIVEKLFEIDPD  IL 
Sbjct:   227 QERATFISHGNTARLAKDRGDLKLAQICGTIAADERRHETAYTKIVEKLFEIDPDGTILG 286

Query:   166 LAGMMKKTIKMPAHLMYDGQNDKIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLM 225
             LA MMKK I MPAHLMYDGQ+D +F HFS VAQRLGVYTAKDYADIL FL+ERW VE L 
Sbjct:   287 LADMMKKKISMPAHLMYDGQDDNLFEHFSTVAQRLGVYTAKDYADILEFLVERWNVETLT 346

Query:   226 GLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKACSTVPFSWVFGKDIR 275
              L+SEG +A+DFVCGLP+RIR++E++AQ   AK+A   +PFSW+FG++IR
Sbjct:   347 DLSSEGHRAQDFVCGLPARIRKIEERAQGR-AKEAAKNIPFSWIFGRNIR 395
GO:0006631 "fatty acid metabolic process" evidence=IEA
GO:0006633 "fatty acid biosynthetic process" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0045300 "acyl-[acyl-carrier-protein
GO:0046914 "transition metal ion binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0007020 "microtubule nucleation" evidence=RCA
TAIR|locus:2181437 AT5G16240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043899 SSI2 "AT2G43710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181427 AT5G16230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029142 FTM1 "FLORAL TRANSITION AT THE MERISTEM1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E3PZS2 SAD2 "Acyl-[acyl-carrier-protein] desaturase 2, chloroplastic" [Ophrys sphegodes (taxid:145953)] Back     alignment and assigned GO terms
UNIPROTKB|Q50824 desA1 "Putative acyl-[acyl-carrier-protein] desaturase desA1" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P22337STAD_RICCO1, ., 1, 4, ., 1, 9, ., 20.71130.99270.6919N/Ano
Q01753STAD_SIMCH1, ., 1, 4, ., 1, 9, ., 20.70790.99270.6884N/Ano
P46253STAD_SOLTU1, ., 1, 4, ., 1, 9, ., 20.70440.99270.6972N/Ano
Q8S059STAD2_ORYSJ1, ., 1, 4, ., 1, 9, ., 20.69750.99270.6919yesno
Q42807STAD_SOYBN1, ., 1, 4, ., 1, 9, ., 20.71870.98180.6593yesno
Q41319STAD_SOLCO1, ., 1, 4, ., 1, 9, ., 20.73880.99270.6972N/Ano
P22243STAD_CARTI1, ., 1, 4, ., 1, 9, ., 20.70790.99270.6919N/Ano
O24428STAD_ELAGV1, ., 1, 4, ., 1, 9, ., 20.70440.99270.6972N/Ano
Q9M879STAD5_ARATH1, ., 1, 4, ., 1, 9, ., 20.73880.99630.6944yesno
P32062STAD_LINUS1, ., 1, 4, ., 1, 9, ., 20.71280.98550.6868N/Ano
Q43593STAD_OLEEU1, ., 1, 4, ., 1, 9, ., 20.72500.99270.7025N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.190.963
4th Layer1.14.19.20.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
PLN00179390 PLN00179, PLN00179, acyl- [acyl-carrier protein] d 0.0
pfam03405330 pfam03405, FA_desaturase_2, Fatty acid desaturase 1e-176
cd01050297 cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferr 1e-132
>gnl|CDD|215091 PLN00179, PLN00179, acyl- [acyl-carrier protein] desaturase Back     alignment and domain information 
 Score =  551 bits (1423), Expect = 0.0
 Identities = 209/291 (71%), Positives = 240/291 (82%), Gaps = 15/291 (5%)

Query: 1   GFYEQVKELRERCKQLPAEYFVVLVGDMITEEALPTYQTMLNTIDGVRDETGASLTSWAT 60
           GFY+QVKELRER  +LP +YFVVLVGDMITEEALPTYQTMLNT+DGVRDETGAS T WA 
Sbjct: 100 GFYDQVKELRERAAELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASATPWAR 159

Query: 61  WIR---------------YLYLSGCVDMKQIERSIQYLIRSGMDPKFENNPYNGFIYTSF 105
           W R               YLYLSG VDM+QIE++IQYLI SGMDPK ENNPY GFIYTSF
Sbjct: 160 WTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPKTENNPYLGFIYTSF 219

Query: 106 QERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHELAYTKIVEKLFEIDPDDAILA 165
           QERATFISHGNTARLAKEHGD KLA+ICG IA+DEKRHE AYT+IVEKLFEIDPD A+LA
Sbjct: 220 QERATFISHGNTARLAKEHGDAKLAKICGTIAADEKRHETAYTRIVEKLFEIDPDGAVLA 279

Query: 166 LAGMMKKTIKMPAHLMYDGQNDKIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLM 225
            A MM+K I MPAHLMYDG++D +F HFSAVAQRLGVYTAKDYADIL  L+ RW+VE+L 
Sbjct: 280 FADMMRKKITMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEHLVRRWKVEELT 339

Query: 226 GLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKACSTVPFSWVFGKDIRV 276
           GL+ EGR+A+D+VCGLP RIRRLE++AQ    K    ++PFSW+F +++R+
Sbjct: 340 GLSGEGRRAQDYVCGLPPRIRRLEERAQDRAKKAKPPSIPFSWIFDREVRL 390

Length = 390
>gnl|CDD|217538 pfam03405, FA_desaturase_2, Fatty acid desaturase Back     alignment and domain information
>gnl|CDD|153109 cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 276
PLN00179390 acyl- [acyl-carrier protein] desaturase 100.0
PF03405330 FA_desaturase_2: Fatty acid desaturase; InterPro: 100.0
cd01050297 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like 100.0
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 97.06
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 95.7
cd01044125 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin 95.09
cd00907153 Bacterioferritin Bacterioferritin, ferritin-like d 94.88
cd01041134 Rubrerythrin Rubrerythrin, ferritin-like diiron-bi 93.23
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 93.11
cd01046123 Rubrerythrin_like rubrerythrin-like, diiron-bindin 93.08
cd07908154 Mn_catalase_like Manganese catalase-like protein, 92.85
cd01051156 Mn_catalase Manganese catalase, ferritin-like diir 92.64
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 91.62
cd01046123 Rubrerythrin_like rubrerythrin-like, diiron-bindin 91.17
PRK08326311 ribonucleotide-diphosphate reductase subunit beta; 90.38
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 90.23
cd01041134 Rubrerythrin Rubrerythrin, ferritin-like diiron-bi 89.05
cd01055156 Nonheme_Ferritin nonheme-containing ferritins. Non 88.72
cd07908154 Mn_catalase_like Manganese catalase-like protein, 88.69
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 88.58
PF13668137 Ferritin_2: Ferritin-like domain 88.0
PF11583304 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_ 87.9
COG1633176 Uncharacterized conserved protein [Function unknow 87.86
cd07911280 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like 87.34
PF00210142 Ferritin: Ferritin-like domain; InterPro: IPR00833 86.82
cd01049288 RNRR2 Ribonucleotide Reductase, R2/beta subunit, f 86.43
COG1633176 Uncharacterized conserved protein [Function unknow 84.73
TIGR00754157 bfr bacterioferritin. Bacterioferritin is a homomu 84.55
PF02332233 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; 83.9
COG0208348 NrdF Ribonucleotide reductase, beta subunit [Nucle 80.03
>PLN00179 acyl- [acyl-carrier protein] desaturase Back     alignment and domain information 
Probab=100.00  E-value=1.1e-109  Score=788.18  Aligned_cols=276  Identities=76%  Similarity=1.249  Sum_probs=269.4

Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhccccCChhhhhhhhhcCCCCCCCCCCCchhhhhh---------------hh
Q 038880            1 GFYEQVKELRERCKQLPAEYFVVLVGDMITEEALPTYQTMLNTIDGVRDETGASLTSWATWIR---------------YL   65 (276)
Q Consensus         1 ~f~~~v~~lr~~a~~Lpd~~~v~lv~~~lTEd~LPtY~~~l~~~~gv~~~~g~~~~~W~~W~~---------------YL   65 (276)
                      +|.++|++||+++++|||+++|||||||||||||||||++||++||++|++|+++++|++|++               ||
T Consensus       100 ~F~~~v~~lr~~~~~Lpd~~~v~LvgdmiTEeaLPtY~~~Ln~~~gv~d~tg~~~~~W~~Wvr~WTAEENRHgdlL~~YL  179 (390)
T PLN00179        100 GFYDQVKELRERAAELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASATPWARWTRAWTAEENRHGDLLNKYL  179 (390)
T ss_pred             ChHHHHhhhhHhhcCCChhhhhhhhhcchhhhcchHHHHHHHHhcccccccCCCCCchhhhccccccccchHHHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999999998               99


Q ss_pred             hhhcCCChHHHHHHHHHHHhcCCCCCCCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHhCCHHHHHHHhHhhchhhHHHH
Q 038880           66 YLSGCVDMKQIERSIQYLIRSGMDPKFENNPYNGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHEL  145 (276)
Q Consensus        66 ~~sg~vDp~~lE~~~~~li~~G~~~~~~~~p~~~~vYtsfQE~AT~ish~ntar~a~~~gDpvLa~il~~IA~DE~rH~~  145 (276)
                      |+||+|||+++|+++|+||++||+|+++++||++|+||||||+||+|||+||||+|+++|||+|++||++||+||+||+.
T Consensus       180 ylTgrVDm~~iE~t~q~li~~G~d~~~~~~py~~~vYtSFQErAT~VSH~NTarlA~~~gDp~la~icg~IAaDE~rHe~  259 (390)
T PLN00179        180 YLSGRVDMRQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARLAKEHGDAKLAKICGTIAADEKRHET  259 (390)
T ss_pred             hhccCcCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHHHHhccHHHHHH
Confidence            99999999999999999999999999889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHhhccCCccccCCCCCcchhhhhHHHHHHHhcCCChhhHHHHHHHHHhcccccccc
Q 038880          146 AYTKIVEKLFEIDPDDAILALAGMMKKTIKMPAHLMYDGQNDKIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLM  225 (276)
Q Consensus       146 fY~~iv~~~le~dPd~tm~Aia~~m~~~~~MP~~~m~dg~~~~lf~~~s~v~araGiY~~~dy~~Vl~~ll~~W~v~~~~  225 (276)
                      ||++||+++||+|||+||.||++||+++|+||||+|+||+|++||+||++++|++||||+.||.+||++||++|+|++++
T Consensus       260 fY~~iV~~~le~dPd~tm~Aiadmm~~ki~MPa~~m~dg~d~~lF~~fsavaqr~GVYt~~dy~dIl~~lv~~W~v~~l~  339 (390)
T PLN00179        260 AYTRIVEKLFEIDPDGAVLAFADMMRKKITMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEHLVRRWKVEELT  339 (390)
T ss_pred             HHHHHHHHHHhhCccHHHHHHHHHHHhcCCCCcccCCCCCcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCcCccc
Confidence            99999999999999999999999999889999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHhcchHHHHHHHHHHHhhHhhhCCCCcCceeeeCCcccC
Q 038880          226 GLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKACSTVPFSWVFGKDIRV  276 (276)
Q Consensus       226 gL~~eg~~Ar~~l~~l~~r~~r~~er~~~~~~~~~~~~~~f~wi~~~~~~~  276 (276)
                      |||+||++||||||+||+|++|++||++.|++|.++..++|||||+|+|.|
T Consensus       340 gLs~eg~kArd~l~~l~~rirr~~era~~~~~~~~~~~~~fsWi~~r~v~~  390 (390)
T PLN00179        340 GLSGEGRRAQDYVCGLPPRIRRLEERAQDRAKKAKPPSIPFSWIFDREVRL  390 (390)
T ss_pred             CCCHHHHHHHHHHHHhHHHHHHHHHHHhhHHhccCCCCCceeeecCCccCC
Confidence            999999999999999999999999999999655455679999999999975

>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids Back     alignment and domain information
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain Back     alignment and domain information
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain Back     alignment and domain information
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01055 Nonheme_Ferritin nonheme-containing ferritins Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>PF13668 Ferritin_2: Ferritin-like domain Back     alignment and domain information
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A Back     alignment and domain information
>COG1633 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms [] Back     alignment and domain information
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>COG1633 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR00754 bfr bacterioferritin Back     alignment and domain information
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1 Back     alignment and domain information
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
1oq4_A363 The Crystal Structure Of The Complex Between Stearo 1e-122
1afr_A345 Stearoyl-Acyl Carrier Protein Desaturase From Casto 1e-121
2j2f_A363 The T199d Mutant Of Stearoyl Acyl Carrier Protein D 1e-121
2uw1_A338 Ivy Desaturase Structure Length = 338 1e-107
2uw1_B338 Ivy Desaturase Structure Length = 338 1e-105
>pdb|1OQ4|A Chain A, The Crystal Structure Of The Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) And Azide. Length = 363 Back     alignment and structure 
Iteration: 1

 Score =  433 bits (1113), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/291 (71%), Positives = 240/291 (82%), Gaps = 17/291 (5%)
Query: 1   GFYEQVKELRERCKQLPAEYFVVLVGDMITEEALPTYQTMLNTIDGVRDETGASLTSWAT 60
           GF EQV+ELRER K++P +YFVVLVGDMITEEALPTYQTMLNT+DGVRDETGAS TSWA 
Sbjct: 75  GFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAI 134
Query: 61  WIR---------------YLYLSGCVDMKQIERSIQYLIRSGMDPKFENNPYNGFIYTSF 105
           W R               YLYLSG VDM+QIE++IQYLI SGMDP+ EN+PY GFIYTSF
Sbjct: 135 WTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSF 194
Query: 106 QERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHELAYTKIVEKLFEIDPDDAILA 165
           QERATFISHGNTAR AKEHGD+KLAQICG IA+DEKRHE AYTKIVEKLFEIDPD  +LA
Sbjct: 195 QERATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLA 254
Query: 166 LAGMMKKTIKMPAHLMYDGQNDKIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLM 225
            A MM+K I MPAHLMYDG++D +F HFSAVAQRLGVYTAKDYADIL FL+ RW+V+KL 
Sbjct: 255 FADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLT 314
Query: 226 GLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKACSTVPFSWVFGKDIRV 276
           GL++EG+KA+D+VC LP RIRRLE++AQ     K   T+PFSW+F + +++
Sbjct: 315 GLSAEGQKAQDYVCRLPPRIRRLEERAQGRA--KEAPTMPFSWIFDRQVKL 363
>pdb|1AFR|A Chain A, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds Length = 345 Back     alignment and structure
>pdb|2J2F|A Chain A, The T199d Mutant Of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) Length = 363 Back     alignment and structure
>pdb|2UW1|A Chain A, Ivy Desaturase Structure Length = 338 Back     alignment and structure
>pdb|2UW1|B Chain B, Ivy Desaturase Structure Length = 338 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
2uw1_A338 Desaturase, plastid delta4 multifunctional acyl-AC 1e-119
1za0_A275 Possible acyl-[acyl-carrier protein] desaturase D 4e-76
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A Length = 338 Back     alignment and structure
 Score =  343 bits (881), Expect = e-119
 Identities = 182/291 (62%), Positives = 225/291 (77%), Gaps = 17/291 (5%)

Query: 1   GFYEQVKELRERCKQLPAEYFVVLVGDMITEEALPTYQTMLNTIDGVRDETGASLTSWAT 60
           GF EQV+ELRER K++P +YFVVLVGDMITEEALPTY +MLN  DG++DETGA  ++WA 
Sbjct: 50  GFEEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYMSMLNRCDGIKDETGAEPSAWAM 109

Query: 61  WIR---------------YLYLSGCVDMKQIERSIQYLIRSGMDPKFENNPYNGFIYTSF 105
           W R               YLYLSG VDM++IE++IQYLI SGMD K EN+PY GFIYTSF
Sbjct: 110 WTRAWTAEENRHGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGMDIKSENSPYLGFIYTSF 169

Query: 106 QERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHELAYTKIVEKLFEIDPDDAILA 165
           QERATFISH NTA+LA+ +GD KLA ICG IASDEKRH  AYTKIVEKL EIDPD  ++A
Sbjct: 170 QERATFISHANTAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIA 229

Query: 166 LAGMMKKTIKMPAHLMYDGQNDKIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLM 225
            A MM+K I MPAHLMYDG ++ +F HF+AVAQRLGVY+A DY DIL FL+++W VE+L 
Sbjct: 230 FADMMRKKITMPAHLMYDGSDELLFKHFTAVAQRLGVYSALDYCDILEFLVDKWNVERLT 289

Query: 226 GLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKACSTVPFSWVFGKDIRV 276
           GL+ EGRKA+++VC L  +IRRLE++AQ    +    T+PFSW+F + +++
Sbjct: 290 GLSDEGRKAQEYVCELGPKIRRLEERAQGRAKEAP--TMPFSWIFDRQVKL 338
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2 Length = 275 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query276
2uw1_A338 Desaturase, plastid delta4 multifunctional acyl-AC 100.0
1za0_A275 Possible acyl-[acyl-carrier protein] desaturase D 100.0
1j30_A144 144AA long hypothetical rubrerythrin; sulerythrin, 94.86
2fkz_A155 Bacterioferritin; ferroxidase, DIIRON site, iron T 94.37
3uoi_A161 Bacterioferritin, BFR; structural genomics, TB str 94.0
1jgc_A161 Bacterioferritin, BFR; iron storage protein, metal 94.0
2y3q_A158 Bacterioferritin; metal binding protein, redox; HE 93.8
3qhb_A179 Symerythrin, ORF180; four-helix bundle, carboxylat 93.59
4am5_A159 Bacterioferritin; metal binding protein, ferroxida 93.27
3r2k_A154 Bacterioferritin, BFR; bacterial ferritin, iron bi 93.22
3fvb_A182 Bacterioferritin; niaid, ssgcid, decode, structura 93.17
2oh3_A167 Rubrerythrin, COG1633: uncharacterized conserved p 93.06
3pwf_A170 Rubrerythrin; non heme iron peroxidases, oxidative 93.03
1lko_A191 Rubrerythrin all-iron(II) form; reduced form, DIIR 93.0
1nfv_A179 Bacterioferritin; 24 subunits in the active molecu 92.6
2fzf_A175 Hypothetical protein; structural genomics, southea 92.58
3gvy_A161 Bacterioferritin; iron storage, DI-iron, ferroxida 92.39
4di0_A144 Rubrerythrin; ssgcid, seattle structural genomics 92.19
2fzf_A175 Hypothetical protein; structural genomics, southea 92.16
2qqy_A149 Sigma B operon; dodecameric alpha-helical, ferriti 91.89
1vjx_A157 Putative ferritin-like DIIRON-carboxylate protein; 91.69
3qb9_A174 Bacterioferritin, BFR; cytosol, structural genomic 91.69
2oh3_A167 Rubrerythrin, COG1633: uncharacterized conserved p 91.45
2vzb_A170 Putative bacterioferritin-related protein; DPS, DP 90.78
1vjx_A157 Putative ferritin-like DIIRON-carboxylate protein; 90.52
2jd6_0174 Ferritin homolog, ferritin; metal transport, iron, 90.38
1yuz_A202 Nigerythrin; rubrythrin, rubredoxin, hemerythrin, 90.33
1yuz_A202 Nigerythrin; rubrythrin, rubredoxin, hemerythrin, 86.79
1krq_A167 Ferritin; H-chain like four-helix bundle, binding 85.72
1eum_A165 Ferritin 1; ECFTNA, metal binding protein; 2.05A { 84.93
3oj5_A189 Ferritin family protein; ferroxidase, cytosol, oxi 84.56
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 84.07
1syy_A346 Ribonucleoside-diphosphate reductase beta chain; D 83.58
2rcc_A346 Ribonucleoside-diphosphate reductase subunit beta; 82.55
3uno_A189 Probable bacterioferritin BFRB; ferroxidase activi 80.81
3k6c_A95 Uncharacterized protein NE0167; structural genomic 80.32
1mxr_A375 Ribonucleotide reductase R2; radical protein, DI i 80.07
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A Back     alignment and structure
Probab=100.00  E-value=1.5e-99  Score=714.53  Aligned_cols=274  Identities=68%  Similarity=1.142  Sum_probs=266.5

Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhccccCChhhhhhhhhcCCCCCCCCCCCchhhhhh---------------hh
Q 038880            1 GFYEQVKELRERCKQLPAEYFVVLVGDMITEEALPTYQTMLNTIDGVRDETGASLTSWATWIR---------------YL   65 (276)
Q Consensus         1 ~f~~~v~~lr~~a~~Lpd~~~v~lv~~~lTEd~LPtY~~~l~~~~gv~~~~g~~~~~W~~W~~---------------YL   65 (276)
                      +|.++|++||+++++|||++++||+|||||||||||||++||++||+++++|+|+++|++|++               ||
T Consensus        50 ~F~~~~~~~~~~~~~l~d~~~v~lv~~~iTEd~LPtY~~~L~~~fgvrd~~g~~~~~w~~w~~~WtaEEnrHg~aL~~YL  129 (338)
T 2uw1_A           50 GFEEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYMSMLNRCDGIKDETGAEPSAWAMWTRAWTAEENRHGDLLNKYL  129 (338)
T ss_dssp             THHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTHHHHHHHHTTSTTTSCSSSSCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhcccccHhhccCCHHHHHHHHHHHHhhhcchHHHHHHHHHcCcccccCCCcchHHHHhhhHhHHHHHHHHHHHHHH
Confidence            599999999999999999999999999999999999999999999999999999999999987               99


Q ss_pred             hhhcCCChHHHHHHHHHHHhcCCCCCCCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHhCCHHHHHHHhHhhchhhHHHH
Q 038880           66 YLSGCVDMKQIERSIQYLIRSGMDPKFENNPYNGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHEL  145 (276)
Q Consensus        66 ~~sg~vDp~~lE~~~~~li~~G~~~~~~~~p~~~~vYtsfQE~AT~ish~ntar~a~~~gDpvLa~il~~IA~DE~rH~~  145 (276)
                      |+||+|||+++|+++|++|++||+|+++++||++|+||||||+||++||+|||++|+++|||+|++||++||+||+||+.
T Consensus       130 ~lsgrvDp~~lE~~~~~~i~~Gfd~~~~~~p~~~~vy~sfQE~AT~vsh~n~~r~A~~~gdPvLa~i~~~IA~DE~RH~~  209 (338)
T 2uw1_A          130 YLSGRVDMRKIEKTIQYLIGSGMDIKSENSPYLGFIYTSFQERATFISHANTAKLAQHYGDKKLAHICGSIASDEKRHAT  209 (338)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHCCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHhhccCCccccCCCCCcchhhhhHHHHHHHhcCCChhhHHHHHHHHHhcccccccc
Q 038880          146 AYTKIVEKLFEIDPDDAILALAGMMKKTIKMPAHLMYDGQNDKIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLM  225 (276)
Q Consensus       146 fY~~iv~~~le~dPd~tm~Aia~~m~~~~~MP~~~m~dg~~~~lf~~~s~v~araGiY~~~dy~~Vl~~ll~~W~v~~~~  225 (276)
                      ||+++|+++|++|||++|.||++||+++|+||||+|+||+++++|+||+++||++||||+.+|.+||++||++|+|++++
T Consensus       210 ~Y~~~v~~~le~dpd~~~~Aia~vm~~~~~MPa~~m~dg~~~~~f~~~s~~a~r~GvYt~~dy~dil~~l~~~W~i~~~~  289 (338)
T 2uw1_A          210 AYTKIVEKLAEIDPDTTVIAFADMMRKKITMPAHLMYDGSDELLFKHFTAVAQRLGVYSALDYCDILEFLVDKWNVERLT  289 (338)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCTTTTCCCSSCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHTTGGGCC
T ss_pred             HHHHHHHHHHhhCchhHHHHHHHHHHhcCcCCcccCcCCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCccccc
Confidence            99999999999999999999999998899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHhcchHHHHHHHHHHHhhHhhhCCCCcCceeeeCCcccC
Q 038880          226 GLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKACSTVPFSWVFGKDIRV  276 (276)
Q Consensus       226 gL~~eg~~Ar~~l~~l~~r~~r~~er~~~~~~~~~~~~~~f~wi~~~~~~~  276 (276)
                      |||+||++||||||+||+|++||+||++.| +|+. .+++|||||+|+|.|
T Consensus       290 gl~~eg~~ard~l~~l~~r~~r~~er~~~~-~~~~-~~~~f~wi~~~~~~~  338 (338)
T 2uw1_A          290 GLSDEGRKAQEYVCELGPKIRRLEERAQGR-AKEA-PTMPFSWIFDRQVKL  338 (338)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC-CEEEEGGGTTEEEEC
T ss_pred             CCCHHHHHHHHHHHcchHHHHHHHHHhhhh-hhcC-CCCCeeEeecCcccC
Confidence            999999999999999999999999999999 4433 459999999999865
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2 Back     alignment and structure
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1 Back     alignment and structure
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A* Back     alignment and structure
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A* Back     alignment and structure
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1 Back     alignment and structure
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A* Back     alignment and structure
>3qhb_A Symerythrin, ORF180; four-helix bundle, carboxylate bridged-DIIRON, ferritin-like superfamily, metal transport; 1.20A {Cyanophora paradoxa} PDB: 3qhc_A 3sid_A Back     alignment and structure
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A* Back     alignment and structure
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A Back     alignment and structure
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308} Back     alignment and structure
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 Back     alignment and structure
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A Back     alignment and structure
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A Back     alignment and structure
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A* Back     alignment and structure
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Back     alignment and structure
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1 Back     alignment and structure
>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei} Back     alignment and structure
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Back     alignment and structure
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str} Back     alignment and structure
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Back     alignment and structure
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A* Back     alignment and structure
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 Back     alignment and structure
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis} Back     alignment and structure
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Back     alignment and structure
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0 Back     alignment and structure
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A Back     alignment and structure
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A Back     alignment and structure
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1 Back     alignment and structure
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1 Back     alignment and structure
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A* Back     alignment and structure
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A Back     alignment and structure
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Back     alignment and structure
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A Back     alignment and structure
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea} Back     alignment and structure
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 276
d1afra_345 a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protei 1e-136
d1za0a1267 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier pro 2e-78
>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein desaturase {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 345 Back     information, alignment and structure

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: delta 9-stearoyl-acyl carrier protein desaturase
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score =  387 bits (995), Expect = e-136
 Identities = 209/291 (71%), Positives = 243/291 (83%), Gaps = 17/291 (5%)

Query: 1   GFYEQVKELRERCKQLPAEYFVVLVGDMITEEALPTYQTMLNTIDGVRDETGASLTSWAT 60
           GF EQV+ELRER K++P +YFVVLVGDMITEEALPTYQTMLNT+DGVRDETGAS TSWA 
Sbjct: 57  GFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAI 116

Query: 61  WIR---------------YLYLSGCVDMKQIERSIQYLIRSGMDPKFENNPYNGFIYTSF 105
           W R               YLYLSG VDM+QIE++IQYLI SGMDP+ EN+PY GFIYTSF
Sbjct: 117 WTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSF 176

Query: 106 QERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHELAYTKIVEKLFEIDPDDAILA 165
           QERATFISHGNTAR AKEHGD+KLAQICG IA+DEKRHE AYTKIVEKLFEIDPD  +LA
Sbjct: 177 QERATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLA 236

Query: 166 LAGMMKKTIKMPAHLMYDGQNDKIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLM 225
            A MM+K I MPAHLMYDG++D +F HFSAVAQRLGVYTAKDYADIL FL+ RW+V+KL 
Sbjct: 237 FADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLT 296

Query: 226 GLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKACSTVPFSWVFGKDIRV 276
           GL++EG+KA+D+VC LP RIRRLE++AQ   AK+A  T+PFSW+F + +++
Sbjct: 297 GLSAEGQKAQDYVCRLPPRIRRLEERAQG-RAKEA-PTMPFSWIFDRQVKL 345
>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein] desaturase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query276
d1afra_345 delta 9-stearoyl-acyl carrier protein desaturase { 100.0
d1za0a1267 Possible acyl-[acyl-carrier protein] desaturase {M 100.0
d1lkoa1146 Rubrerythrin, N-terminal domain {Desulfovibrio vul 96.0
d1j30a_141 Hypothetical rubrerythrin {Archaeon Sulfolobus tok 95.57
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 95.01
d1nf4a_169 Bacterioferritin (cytochrome b1) {Desulfovibrio de 94.7
d2htna1158 Bacterioferritin (cytochrome b1) {Escherichia coli 94.65
d1nnqa1133 Rubrerythrin, N-terminal domain {Archaeon Pyrococc 94.58
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 94.33
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 94.06
d1jgca_160 Bacterioferritin (cytochrome b1) {Rhodobacter caps 94.05
d2fkza1154 Bacterioferritin (cytochrome b1) {Azotobacter vine 93.99
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 93.3
d1yuza1135 Nigerythrin, N-terminal domain {Desulfovibrio vulg 92.98
d2ib0a1142 Hypothetical protein Rv2844 {Mycobacterium tubercu 91.91
d1nnqa1133 Rubrerythrin, N-terminal domain {Archaeon Pyrococc 91.06
d1s3qa1162 Non-hem ferritin {Archaeon Archaeoglobus fulgidus 90.31
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 89.25
d1euma_161 Non-hem ferritin {Escherichia coli, FtnA [TaxId: 5 89.1
d2inca1 491 Toluene, o-xylene monooxygenase oxygenase subunit 89.05
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 87.11
d1syya_317 Ribonucleotide reductase R2 {Chlamydia trachomatis 86.18
d3dhza1284 Ribonucleotide reductase R2 {Corynebacterium ammon 85.94
d1w68a_281 Ribonucleotide reductase R2 {Mouse (Mus musculus) 85.77
d1mtyd_ 512 Methane monooxygenase hydrolase alpha subunit {Met 84.63
d1r2fa_283 Ribonucleotide reductase R2 {Salmonella typhimuriu 83.87
d1yuza1135 Nigerythrin, N-terminal domain {Desulfovibrio vulg 83.33
d1jk0b_285 Ribonucleotide reductase R2 {Baker's yeast (Saccha 82.63
d1krqa_165 Non-hem ferritin {Campylobacter jejuni [TaxId: 197 81.81
d1mxra_339 Ribonucleotide reductase R2 {Escherichia coli [Tax 81.41
d1vlga_164 Non-hem ferritin {Thermotoga maritima [TaxId: 2336 80.43
>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein desaturase {Castor bean (Ricinus communis) [TaxId: 3988]} Back     information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: delta 9-stearoyl-acyl carrier protein desaturase
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=100.00  E-value=3.1e-101  Score=723.92  Aligned_cols=274  Identities=76%  Similarity=1.242  Sum_probs=266.5

Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhccccCChhhhhhhhhcCCCCCCCCCCCchhhhhh---------------hh
Q 038880            1 GFYEQVKELRERCKQLPAEYFVVLVGDMITEEALPTYQTMLNTIDGVRDETGASLTSWATWIR---------------YL   65 (276)
Q Consensus         1 ~f~~~v~~lr~~a~~Lpd~~~v~lv~~~lTEd~LPtY~~~l~~~~gv~~~~g~~~~~W~~W~~---------------YL   65 (276)
                      +|.+++++||+++++|||++++||||||||||||||||++||++||++|++|+++++|++|++               ||
T Consensus        57 ~F~~~~~e~~~~a~~lpd~~~v~lv~nllTEd~LPtY~~~l~~~~g~~d~~g~~~~~W~~Wv~~WTAEEnRHg~aLr~YL  136 (345)
T d1afra_          57 GFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYL  136 (345)
T ss_dssp             THHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTHHHHHHHHTTSTTTCCSSSSCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhccccchhhccCCHHHHHHHHHhhhccccCchHHHHHHHHhccccccCCCCcchhhhccccccccchHHHHHHHHH
Confidence            599999999999999999999999999999999999999999999999999999999999988               99


Q ss_pred             hhhcCCChHHHHHHHHHHHhcCCCCCCCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHhCCHHHHHHHhHhhchhhHHHH
Q 038880           66 YLSGCVDMKQIERSIQYLIRSGMDPKFENNPYNGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHEL  145 (276)
Q Consensus        66 ~~sg~vDp~~lE~~~~~li~~G~~~~~~~~p~~~~vYtsfQE~AT~ish~ntar~a~~~gDpvLa~il~~IA~DE~rH~~  145 (276)
                      |+||+|||+++|++++++++.||+|+++++|+.+|+||||||+||+|||+|||++|+++|||+|++||++||+||+||+.
T Consensus       137 ~vsr~VDp~~lE~~~~~~~~~G~~~~~~~~p~~~~vY~sfQE~AT~vsh~nt~~~a~e~gDPvL~~I~~rIA~DE~rH~~  216 (345)
T d1afra_         137 YLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHET  216 (345)
T ss_dssp             HHHCSSCHHHHHHHHHHHHHHCCCCSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCChHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhHhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHhhccCCccccCCCCCcchhhhhHHHHHHHhcCCChhhHHHHHHHHHhcccccccc
Q 038880          146 AYTKIVEKLFEIDPDDAILALAGMMKKTIKMPAHLMYDGQNDKIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLM  225 (276)
Q Consensus       146 fY~~iv~~~le~dPd~tm~Aia~~m~~~~~MP~~~m~dg~~~~lf~~~s~v~araGiY~~~dy~~Vl~~ll~~W~v~~~~  225 (276)
                      ||+++|+++|++|||+||.||++||+++|+|||++|+||+++++|++|++++|++||||+.+|.|||+++|++|+|++++
T Consensus       217 fY~~~v~~~Le~dPd~~v~Ai~~~m~~~f~MP~~~m~dg~~~~~F~~~s~~~~r~GiY~~~d~~dil~~lv~~W~i~~~~  296 (345)
T d1afra_         217 AYTKIVEKLFEIDPDGTVLAFADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLT  296 (345)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCTTTTCCCSSCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTGGGCC
T ss_pred             HHHHHHHHHHhhCccHHHHHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccc
Confidence            99999999999999999999999998899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHhcchHHHHHHHHHHHhhHhhhCCCCcCceeeeCCcccC
Q 038880          226 GLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKACSTVPFSWVFGKDIRV  276 (276)
Q Consensus       226 gL~~eg~~Ar~~l~~l~~r~~r~~er~~~~~~~~~~~~~~f~wi~~~~~~~  276 (276)
                      |||++|++||||||+||+|++||+||++.|+ |+ +..++|||||||+|.|
T Consensus       297 gL~~eg~~Ard~l~~l~~r~~r~~er~~~ra-~~-~~~~~fswi~~r~v~~  345 (345)
T d1afra_         297 GLSAEGQKAQDYVCRLPPRIRRLEERAQGRA-KE-APTMPFSWIFDRQVKL  345 (345)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHTCCHHH-HT-CCEEEEGGGTTEEEEC
T ss_pred             CCCHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cc-CcCCceeeeccccccC
Confidence            9999999999999999999999999998873 43 3568999999999975
>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein] desaturase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA [TaxId: 562]} Back     information, alignment and structure
>d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase oxygenase subunit TouA {Pseudomonas stutzeri [TaxId: 316]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Back     information, alignment and structure
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit {Methylococcus capsulatus [TaxId: 414]} Back     information, alignment and structure
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Back     information, alignment and structure
>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure