Citrus Sinensis ID: 038945

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
Protein Sequence
MKTFSLGILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTKKKLFNEM
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEEEccccEEEEccccccccccccccccccccccEEEccccccccccccccccccccccccEEEEEEcccccccccccHHHcccccccEEEEEccccccEEEccccccccccccccccccEEEEEEcccccccccccccccEEcccccccHHccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEcccccccccccccccccccccccccccEEEEccccccccccccccccccccccEEEEEccccccEEcccccccccccEEEccccccccccccccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEccccEccccccEEEEEEccccEEEEEcccccccHHHHHHHHcccccccEEEEcccHcHHHHHcccccccccccccEEEEEEccccHHHcccHHHHHHHHHHcEEEEcccHHHHHHHHcccccccccccEEEcccccEEEEcccHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccEEcccHHHccccccccEccccEEEEEEcccccHEEccHHHHHHHHHHcEEEEcccHcHEEEEccccccccccEEEcccccEEEEcccHHHHHcccccccEEccccEEEEEEccccEEEEccccccccccEEEEEEccccccccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mktfslgilstpklhkVQVTVKEEGElyhregnlnSTIQKCYIEMIGFRDIENIKLSLFPRlkeiwhnqalpvsffnNLRHLVLddcknmssaipANLIRCLNNlaslevrncdsleevlhleelnadkehlcplfpklfslrlidlpklkrfCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEIsecsqlqklvpascylenlatlevsKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLeylgldclpsltsfclgnyalefpslehvvvrqcptmkifsqgvvdapklnkvkpteeedgddegcwegnlnDTKKKLFNEM
Flexible Loop (DISEMBL)
mktfslgilstpklhkvqVTVKEEgelyhregnlnstIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLltlstseslvNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKifsqgvvdapklnkvkpteeedgddegcwegnlndtkkklfnem
Low Complexity Region (SEG)
MKTFSLGILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTeeedgddegcwegNLNDTKKKLFNEM
Disordered region (IsUnstruct)
******GILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVD************************************
Disordered Region (DISOPRED)
*KTFSLGILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQ*********CIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTKKKLFNEM
Disordered Region (DISEMBL)
MKTFSLGILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNK************GCWEGNLNDTKKKLFNEM
Disordered Region (DISPRO)
*KTFSLGILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTKKKLFNEM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKTFSLGILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTKKKLFNEM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	363	2.2.26 [Sep-21-2011]
O22727	967	Probable disease resistan	yes	no	0.460	0.172	0.293	2e-05
P60838	894	Probable disease resistan	no	no	0.275	0.111	0.323	5e-05
O64789	925	Probable disease resistan	no	no	0.432	0.169	0.285	6e-05
Q9LVT3	948	Probable disease resistan	no	no	0.283	0.108	0.305	0.0001
Q940K0	889	Probable disease resistan	no	no	0.438	0.178	0.273	0.0005
O64790	762	Probable disease resistan	no	no	0.363	0.173	0.284	0.0009

>sp|O22727|DRL16_ARATH Probable disease resistance protein At1g61190 OS=Arabidopsis thaliana GN=At1g61190 PE=3 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 83/184 (45%), Gaps = 17/184 (9%)

Query: 182 LQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLS 241
           L  LL EN+  +++  N+K  E    S    + P      NL  L + KCH + +L  + 
Sbjct: 705 LYGLLVENSYFSEI--NIKCRESETESSYLHINPKIPCFTNLTGLIIMKCHSMKDLTWIL 762

Query: 242 TSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIV-FRKLEYLGLDCLPSLTSFCLGNY 300
            + +LVNL+   + D + + EII  +        I  F+KLE L L  LP L S      
Sbjct: 763 FAPNLVNLD---IRDSREVGEIINKEKAINLTSIITPFQKLERLFLYGLPKLESIYWS-- 817

Query: 301 ALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLN----KVKPTEEEDGDDEGCWEGNLNDTK 356
            L FP L ++VV+ CP ++         P +     ++ P E+E   +E  WE    DTK
Sbjct: 818 PLPFPLLSNIVVKYCPKLRKLPLNATSVPLVEEFEIRMDPPEQE---NELEWED--EDTK 872

Query: 357 KKLF 360
            +  
Sbjct: 873 NRFL 876

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 5/105 (4%)

Query: 215 PASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAED 274
           P + +L NL+T+ +S C GL +L  L  + +L +LE +   D +++E II  +       
Sbjct: 739 PKTQFLHNLSTVHISSCDGLKDLTWLLFAPNLTSLEVL---DSELVEGIINQEKAMTMSG 795

Query: 275 CIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMK 319
            I F+KLE L L  L  L S       L FP L+ + + +CP ++
Sbjct: 796 IIPFQKLESLRLHNLAMLRSIYW--QPLSFPCLKTIHITKCPELR 838

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64789|DRL18_ARATH Probable disease resistance protein At1g61310 OS=Arabidopsis thaliana GN=At1g61310 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 74/175 (42%), Gaps = 18/175 (10%)

Query: 193 NKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERM 252
           N  F+ +K  E    S    + P      NL+ L++ KCH + +L  +  + +LV L   
Sbjct: 721 NSYFSEIKCRESETDSSYLHINPKIPCFTNLSRLDIVKCHSMKDLTWILFAPNLVVL--- 777

Query: 253 KMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVV 312
            + D + + EII  +          F KLE L L  LP L S       L FP L ++ V
Sbjct: 778 FIEDSREVGEIINKEKATNLTSITPFLKLERLILCYLPKLESIYWS--PLPFPLLLNIDV 835

Query: 313 RQCPTMKIFSQGVVDAPKLNKVK----PTEEEDGDDEGCWEGNLNDTKKKLFNEM 363
            +CP ++        APK+ + +    P E E       WE    DTK +   EM
Sbjct: 836 EECPKLRKLPLNATSAPKVEEFRILMYPPELE-------WED--EDTKNRFLPEM 881

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT3|DRL38_ARATH Probable disease resistance protein At5g47260 OS=Arabidopsis thaliana GN=At5g47260 PE=3 SV=2

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 15/118 (12%)

Query: 207 CSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQ- 265
           C+  ++++P     +N+ T+ + +C  L +L  L  +  L  L    +S+C  MEE+I  
Sbjct: 710 CTIQREIIPQ---FQNIRTMTIHRCEYLRDLTWLLLAPCLGEL---SVSECPQMEEVISK 763

Query: 266 ----SQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMK 319
               +++G  +E    F+ L  L LD LP L S       L FP LE++V+R+CP ++
Sbjct: 764 DKAMAKLGNTSEQP--FQNLTKLVLDGLPKLESIYW--TPLPFPVLEYLVIRRCPELR 817

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940K0|DRL15_ARATH Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana GN=At1g61180 PE=2 SV=2

 Score = 45.8 bits (107), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 13/172 (7%)

Query: 193 NKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERM 252
           N  F+ +K  E    S   ++ P      NL+ LE+ KCH + +L  +  + +LV L   
Sbjct: 708 NSYFSEIKCRESETESSYLRINPKIPCFTNLSRLEIMKCHSMKDLTWILFAPNLVVL--- 764

Query: 253 KMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVV 312
            + D + + EII  +          F KLE+L L  LP L S       L FP L  + V
Sbjct: 765 LIEDSREVGEIINKEKATNLTSITPFLKLEWLILYNLPKLESIYWS--PLPFPVLLTMDV 822

Query: 313 RQCPTMKIFSQGVVDAPKLNKVK----PTEEEDGDDEGCWEGNLNDTKKKLF 360
             CP ++          K+ + +    P  E++ + E  WE   +DTK +  
Sbjct: 823 SNCPKLRKLPLNATSVSKVEEFEIHMYPPPEQENELE--WED--DDTKNRFL 870

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64790|DRL17_ARATH Probable disease resistance protein At1g61300 OS=Arabidopsis thaliana GN=At1g61300 PE=2 SV=2

 Score = 45.1 bits (105), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 5/137 (3%)

Query: 193 NKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERM 252
           N  F+ +K  E    S   ++ P      NL+ L +SKCH + +L  +  + +LV L   
Sbjct: 596 NSYFSEIKCRESETASSYLRINPKIPCFTNLSRLGLSKCHSIKDLTWILFAPNLVYL--- 652

Query: 253 KMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVV 312
            + D + + EII  +          F KLE L L  LP L S       L FP L  + V
Sbjct: 653 YIEDSREVGEIINKEKATNLTSITPFLKLERLILYNLPKLESIYWS--PLHFPRLLIIHV 710

Query: 313 RQCPTMKIFSQGVVDAP 329
             CP ++         P
Sbjct: 711 LDCPKLRKLPLNATSVP 727

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
224110992	2359	cc-nbs-lrr resistance protein [Populus t	0.823	0.126	0.390	5e-52
302143659	922	unnamed protein product [Vitis vinifera]	0.774	0.304	0.356	2e-41
359488108	1436	PREDICTED: disease resistance protein At	0.774	0.195	0.356	3e-41
147865073	1694	hypothetical protein VITISV_021876 [Viti	0.804	0.172	0.360	2e-40
359488101	1677	PREDICTED: disease resistance protein At	0.818	0.177	0.358	3e-40
302143647	759	unnamed protein product [Vitis vinifera]	0.710	0.339	0.377	4e-40
359488288	1340	PREDICTED: LOW QUALITY PROTEIN: probable	0.812	0.220	0.346	8e-40
296087869	1711	unnamed protein product [Vitis vinifera]	0.741	0.157	0.351	2e-37
359488025	1781	PREDICTED: uncharacterized protein LOC10	0.741	0.151	0.351	2e-37
147777048	1460	hypothetical protein VITISV_009359 [Viti	0.834	0.207	0.345	4e-37

>gi|224110992|ref|XP_002332999.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834484|gb|EEE72961.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 142/364 (39%), Positives = 202/364 (55%), Gaps = 65/364 (17%)

Query: 1    MKTFSLGILSTPKLHKVQVTVKEEGE-LYHREGNLNSTIQKCYIEMIGFRDIENIKLSLF 59
            M+ FS GI STPKL  V        E  +H  GNLN+T+Q+ Y +M+G   I ++KLS F
Sbjct: 1612 MRIFSQGISSTPKLQGVYWKKDSMNEKCWH--GNLNATLQQLYTKMVGCNGIWSLKLSDF 1669

Query: 60   PRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEV 119
            P+LK+ WH Q LP + F+NL +L +D+C  +S+AIP+N+++ +NNL  L V+NC+SLE V
Sbjct: 1670 PQLKDRWHGQ-LPFNCFSNLGNLTVDNCAIVSTAIPSNILKFMNNLKYLHVKNCESLEGV 1728

Query: 120  LHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRL 179
              LE L+A   +   L P L  L L+DLP+L+   N   ++  +L+              
Sbjct: 1729 FDLEGLSAQAGY-DRLLPNLQELHLVDLPELRHIWN--RDLPGILD-------------- 1771

Query: 180  FALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLT 239
                            F NLK L++  CS L+                        N+ +
Sbjct: 1772 ----------------FRNLKRLKVHNCSSLR------------------------NIFS 1791

Query: 240  LSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGN 299
             S +  LV LER+ + +C +M+EI+ ++ G EAE  ++F KL++L L CLP L SF LG 
Sbjct: 1792 PSMASGLVQLERIGIRNCALMDEIVVNK-GTEAETEVMFHKLKHLALVCLPRLASFHLGY 1850

Query: 300  YALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTKKKL 359
             A++ PSLE V+V++CP MK FSQGVV  PKL KV   ++E GD    W  +LN T  KL
Sbjct: 1851 CAIKLPSLECVLVQECPQMKTFSQGVVSTPKLRKV--VQKEFGDSVH-WAHDLNATIHKL 1907

Query: 360  FNEM 363
            F EM
Sbjct: 1908 FIEM 1911

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143659|emb|CBI22412.3| unnamed protein product [Vitis vinifera]

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/325 (35%), Positives = 177/325 (54%), Gaps = 44/325 (13%)

Query: 29  HREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCK 88
           H EGNL+  +   ++  + F ++E ++L    R  EIW  Q  PV  F  LR L + D +
Sbjct: 628 HGEGNLDMPL--FFLPHVAFPNLEELRLG-DNRDTEIWPEQ-FPVDSFPRLRVLHVHDYR 683

Query: 89  NMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP 148
           ++   IP+ +++ L+NL  L+V +C S++EV  LE L  D+E+      +L  + L DLP
Sbjct: 684 DILVVIPSFMLQRLHNLEVLKVGSCSSVKEVFQLEGL--DEENQAKRLGRLREIELHDLP 741

Query: 149 KLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECS 208
            L R                                L KEN+E      +L+SLE+  C 
Sbjct: 742 GLTR--------------------------------LWKENSEPGLDLQSLESLEVWNCG 769

Query: 209 QLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQV 268
            L  LVP+S   +NLATL+V  C  L +L++ S ++SLV L+ +K+    MMEE++ ++ 
Sbjct: 770 SLINLVPSSVSFQNLATLDVQSCGSLRSLISPSVAKSLVKLKTLKIGRSDMMEEVVANE- 828

Query: 269 GEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDA 328
           G EA D I F KL+++ L  LP+LTSF  G Y   FPSLE ++V++CP MK+FS  +V  
Sbjct: 829 GGEATDEITFYKLQHMELLYLPNLTSFSSGGYIFSFPSLEQMLVKECPKMKMFSPSLVTP 888

Query: 329 PKLNKVKPTEEEDGDDEGCWEGNLN 353
           P+L ++K      GD+E  W+ +LN
Sbjct: 889 PRLKRIKV-----GDEEWPWQDDLN 908

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488108|ref|XP_003633701.1| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/325 (35%), Positives = 177/325 (54%), Gaps = 44/325 (13%)

Query: 29   HREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCK 88
            H EGNL+  +   ++  + F ++E ++L    R  EIW  Q  PV  F  LR L + D +
Sbjct: 1115 HGEGNLDMPL--FFLPHVAFPNLEELRLG-DNRDTEIWPEQ-FPVDSFPRLRVLHVHDYR 1170

Query: 89   NMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP 148
            ++   IP+ +++ L+NL  L+V +C S++EV  LE L  D+E+      +L  + L DLP
Sbjct: 1171 DILVVIPSFMLQRLHNLEVLKVGSCSSVKEVFQLEGL--DEENQAKRLGRLREIELHDLP 1228

Query: 149  KLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECS 208
             L R                                L KEN+E      +L+SLE+  C 
Sbjct: 1229 GLTR--------------------------------LWKENSEPGLDLQSLESLEVWNCG 1256

Query: 209  QLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQV 268
             L  LVP+S   +NLATL+V  C  L +L++ S ++SLV L+ +K+    MMEE++ ++ 
Sbjct: 1257 SLINLVPSSVSFQNLATLDVQSCGSLRSLISPSVAKSLVKLKTLKIGRSDMMEEVVANE- 1315

Query: 269  GEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDA 328
            G EA D I F KL+++ L  LP+LTSF  G Y   FPSLE ++V++CP MK+FS  +V  
Sbjct: 1316 GGEATDEITFYKLQHMELLYLPNLTSFSSGGYIFSFPSLEQMLVKECPKMKMFSPSLVTP 1375

Query: 329  PKLNKVKPTEEEDGDDEGCWEGNLN 353
            P+L ++K      GD+E  W+ +LN
Sbjct: 1376 PRLKRIKV-----GDEEWPWQDDLN 1395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera]

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 121/336 (36%), Positives = 175/336 (52%), Gaps = 44/336 (13%)

Query: 29   HREGNLNSTI-QKCYI-EMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDD 86
            H EG+ +  I Q  ++ + +GF  +E + L       EIW  Q  P+  F  LR L +  
Sbjct: 1311 HHEGSFDMPILQPLFLLQQVGFPYLEELILDDNGN-TEIWQEQ-FPMDSFPRLRCLNVRG 1368

Query: 87   CKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLID 146
              ++   IP+ +++ L+NL  L+VR C S++E+  LE L  D+E+      +L  + L  
Sbjct: 1369 YGDILVVIPSFMLQRLHNLEKLDVRRCSSVKEIFQLEGL--DEENQAQRLGRLREIILGS 1426

Query: 147  LPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISE 206
            LP                                AL HL KEN++S     +L+SLE+  
Sbjct: 1427 LP--------------------------------ALTHLWKENSKSGLDLQSLESLEVWS 1454

Query: 207  CSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQS 266
            C+ L  LVP S   +NL TL+V  C  L +L++ S ++SLV L ++K+    MMEE++ +
Sbjct: 1455 CNSLISLVPCSVSFQNLDTLDVWSCSSLRSLISPSVAKSLVKLRKLKIGGSHMMEEVVAN 1514

Query: 267  QVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV 326
            + G E  D I F KL+++ L CLP+LTSF  G Y   FPSLEH+VV +CP MKIFS   V
Sbjct: 1515 E-GGEVVDEIAFYKLQHMVLLCLPNLTSFNSGGYIFSFPSLEHMVVEECPKMKIFSPSFV 1573

Query: 327  DAPKLNKVKPTEEEDGDDEGCWEGNLNDTKKKLFNE 362
              PKL +V     E  DDE  W  +LN T   LF +
Sbjct: 1574 TTPKLERV-----EVADDEWHWHNDLNTTIHYLFKK 1604

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488101|ref|XP_002263761.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 123/343 (35%), Positives = 177/343 (51%), Gaps = 46/343 (13%)

Query: 15   HKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVS 74
            HK+ V   E      R G  N  +    +  + F ++E + L    +  EIW +Q LPV 
Sbjct: 1213 HKLDVFAFETPTFQQRHGEGNLDMPLFLLPHVAFPNLEELALGQ-NKDTEIWPDQ-LPVD 1270

Query: 75   FFNNLRHLVLDDCKNMS--SAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHL 132
             F  LR  VLD C+N      IP+ ++  L+NL  L V  C S++EV  LE L  D+E+ 
Sbjct: 1271 CFPRLR--VLDVCENRDILVVIPSFMLHILHNLEVLNVVECSSVKEVFQLEGL--DEENQ 1326

Query: 133  CPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAES 192
                 +L  +RL DLP                                AL HL KEN++S
Sbjct: 1327 AKRLGRLREIRLHDLP--------------------------------ALTHLWKENSKS 1354

Query: 193  NKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERM 252
                 +L+SLE   C  L  LVP+    +NLATL+V  C  L +L++ S ++SLV L+ +
Sbjct: 1355 GLDLQSLESLEEWNCDSLINLVPSPVSFQNLATLDVHSCGSLRSLISPSVAKSLVKLKTL 1414

Query: 253  KMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVV 312
            K+    MMEE++ ++ G EA D I F KL+++ L  LP+LTSF  G Y   FPSLE ++V
Sbjct: 1415 KIRRSDMMEEVVANE-GGEAIDEITFYKLQHMELLYLPNLTSFSSGGYIFSFPSLEQMLV 1473

Query: 313  RQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDT 355
            ++CP MK+FS  +V  P+L ++K      GDDE  W+ + N T
Sbjct: 1474 KECPKMKMFSPSLVTTPRLERIKV-----GDDEWPWQDDPNTT 1511

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143647|emb|CBI22400.3| unnamed protein product [Vitis vinifera]

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 113/299 (37%), Positives = 159/299 (53%), Gaps = 41/299 (13%)

Query: 64  EIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLE 123
           EIW  Q  P+  F  LR+L +    ++   IP+ +++  +NL  L VR C S++E+  LE
Sbjct: 484 EIWQEQ-FPMDSFPRLRYLKVYGYIDILVVIPSFMLQRSHNLEKLNVRRCSSVKEIFQLE 542

Query: 124 ELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQ 183
            L  D+E+      +L  + L DLP                                AL 
Sbjct: 543 GL--DEENQAQRLGRLREIWLRDLP--------------------------------ALT 568

Query: 184 HLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTS 243
           HL KEN++S     +L+SLE+  C  L  LVP S   +NL TL+V  C  L +L++ S +
Sbjct: 569 HLWKENSKSILDLQSLESLEVWNCDSLISLVPCSVSFQNLDTLDVWSCSNLRSLISPSVA 628

Query: 244 ESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALE 303
           +SLV L ++K+    MMEE++ ++ G EA D I F KL+++ L CLP+LTSF  G Y   
Sbjct: 629 KSLVKLRKLKIGGLHMMEEVVANE-GGEAVDEIAFYKLQHMVLLCLPNLTSFNSGGYIFS 687

Query: 304 FPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTKKKLFNE 362
           FPSLEH+VV +CP MKIFS  +V  PKL +V     E  DDE  W  +LN T   LF +
Sbjct: 688 FPSLEHMVVEECPKMKIFSPSLVTTPKLERV-----EVADDEWHWHNDLNTTIHNLFKK 741

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488288|ref|XP_003633735.1| PREDICTED: LOW QUALITY PROTEIN: probable disease resistance protein At1g61310-like [Vitis vinifera]

 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 185/369 (50%), Gaps = 74/369 (20%)

Query: 57   SLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSL 116
            SLF +  E+W+ Q L +SF  NLR L++ +C ++    P++L + L NL  L+V NC+ L
Sbjct: 914  SLFNQ-AEVWNGQ-LSLSF-GNLRSLMMQNCMSLLKVFPSSLFQSLQNLEVLKVENCNQL 970

Query: 117  EEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNF-------- 168
            EE+  LE LN D  H+  L PKL  + L     L+        IIE+ +  F        
Sbjct: 971  EEIFDLEGLNVDGGHV-GLLPKLEEMCLTGCIPLEELILDGSRIIEIWQEQFPVESFCRL 1029

Query: 169  ------------IRIKSNLMTRLFALQ--------------------------------- 183
                        + I S+++ RL  L+                                 
Sbjct: 1030 RVLSICEYRDILVVIPSSMLQRLHTLEKLTVRSCGSVKEVVQLEGLVDEENHFRALARLR 1089

Query: 184  -----------HLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCH 232
                       +L KEN+     F NL+ L+I +C  L  LVP+S    NLA+L++S C 
Sbjct: 1090 ELELNDLPELKYLWKENSNVGPHFQNLEILKIWDCDNLMNLVPSSVSFHNLASLDISYCC 1149

Query: 233  GLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSL 292
             LINLL    ++SLV  +  K+    MM+E++ ++ GE A D I F KLE + L  LP+L
Sbjct: 1150 SLINLLPPLIAKSLVQHKIFKIGRSDMMKEVVANE-GENAGDEITFCKLEEIELCVLPNL 1208

Query: 293  TSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNL 352
            TSFC G Y+L FP LE VVV +CP MKIFSQG++  P+L++V     E G+++  W+ +L
Sbjct: 1209 TSFCSGVYSLSFPVLERVVVEECPKMKIFSQGLLVTPRLDRV-----EVGNNKEHWKDDL 1263

Query: 353  NDTKKKLFN 361
            N T   LFN
Sbjct: 1264 NTTIHLLFN 1272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087869|emb|CBI35152.3| unnamed protein product [Vitis vinifera]

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/327 (35%), Positives = 175/327 (53%), Gaps = 58/327 (17%)

Query: 29   HREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCK 88
            H EGNL+          + F ++E ++L L  R  EIW  Q  P+  F  LR L + D +
Sbjct: 1418 HYEGNLD----------VAFPNLEELELGL-NRDTEIWPEQ-FPMDSFPRLRVLDVYDYR 1465

Query: 89   NMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP 148
            ++   IP+ +++ L+NL  L+V  C S+EEV  LE L  D+E+      +L  ++L DLP
Sbjct: 1466 DILVVIPSFMLQRLHNLEVLKVGRCSSVEEVFQLEGL--DEENQAKRLGQLREIKLDDLP 1523

Query: 149  KLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECS 208
                                             L HL KEN++      +L+SLE+ +C 
Sbjct: 1524 --------------------------------GLTHLWKENSKPGLDLQSLESLEVLDCK 1551

Query: 209  QLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQV 268
            +L  LVP+S   +NLATL+V  C  L +L++ S ++SLV L+ +K+    MMEE++ ++ 
Sbjct: 1552 KLINLVPSSVSFQNLATLDVQSCGSLRSLISPSVAKSLVKLKTLKICGSDMMEEVVANE- 1610

Query: 269  GEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDA 328
            G EA D I F KL+++ L  LP+LTSF  G Y   FPSLE ++V++CP MK+FS      
Sbjct: 1611 GGEATDEITFYKLQHMELLYLPNLTSFSSGGYIFSFPSLEQMLVKECPKMKMFS------ 1664

Query: 329  PKLNKVKPTEEEDGDDEGCWEGNLNDT 355
            P+L ++K      GDD+   + +LN T
Sbjct: 1665 PRLERIKV-----GDDKWPRQDDLNTT 1686

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488025|ref|XP_003633688.1| PREDICTED: uncharacterized protein LOC100852821 [Vitis vinifera]

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/327 (35%), Positives = 175/327 (53%), Gaps = 58/327 (17%)

Query: 29   HREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCK 88
            H EGNL+          + F ++E ++L L  R  EIW  Q  P+  F  LR L + D +
Sbjct: 1488 HYEGNLD----------VAFPNLEELELGL-NRDTEIWPEQ-FPMDSFPRLRVLDVYDYR 1535

Query: 89   NMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP 148
            ++   IP+ +++ L+NL  L+V  C S+EEV  LE L  D+E+      +L  ++L DLP
Sbjct: 1536 DILVVIPSFMLQRLHNLEVLKVGRCSSVEEVFQLEGL--DEENQAKRLGQLREIKLDDLP 1593

Query: 149  KLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECS 208
                                             L HL KEN++      +L+SLE+ +C 
Sbjct: 1594 --------------------------------GLTHLWKENSKPGLDLQSLESLEVLDCK 1621

Query: 209  QLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQV 268
            +L  LVP+S   +NLATL+V  C  L +L++ S ++SLV L+ +K+    MMEE++ ++ 
Sbjct: 1622 KLINLVPSSVSFQNLATLDVQSCGSLRSLISPSVAKSLVKLKTLKICGSDMMEEVVANE- 1680

Query: 269  GEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDA 328
            G EA D I F KL+++ L  LP+LTSF  G Y   FPSLE ++V++CP MK+FS      
Sbjct: 1681 GGEATDEITFYKLQHMELLYLPNLTSFSSGGYIFSFPSLEQMLVKECPKMKMFS------ 1734

Query: 329  PKLNKVKPTEEEDGDDEGCWEGNLNDT 355
            P+L ++K      GDD+   + +LN T
Sbjct: 1735 PRLERIKV-----GDDKWPRQDDLNTT 1756

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777048|emb|CAN65562.1| hypothetical protein VITISV_009359 [Vitis vinifera]

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 121/350 (34%), Positives = 180/350 (51%), Gaps = 47/350 (13%)

Query: 13   KLHKVQV-TVKEEG-ELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQA 70
            K HK+ V T K    +  HREGNL+  +    +  + F ++E + L    R  +IW  Q 
Sbjct: 1136 KCHKLNVYTFKTPAFQQRHREGNLDMPL--FSLPHVAFPNLEELTLGQ-NRDTKIWLEQ- 1191

Query: 71   LPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKE 130
             PV  F  LR L + D +++   IP  +++ L+NL  LEVR C S++EV  LE L  D+E
Sbjct: 1192 FPVDSFPRLRLLRVCDYRDILVVIPFFMLQILHNLEVLEVRGCSSVKEVFQLEGL--DEE 1249

Query: 131  HLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENA 190
            +      +L  + L DL                                  L HL KEN+
Sbjct: 1250 NQAKRLGRLREIMLDDL---------------------------------GLTHLWKENS 1276

Query: 191  ESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLE 250
            +      +L+SL +  C  L  LVP+S   +NLATL+V  C  L +L++   ++SLV L+
Sbjct: 1277 KPGLDLQSLESLVVRNCVSLINLVPSSVSFQNLATLDVQSCGRLRSLISPLVAKSLVKLK 1336

Query: 251  RMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHV 310
             +K+    MMEE++ ++ G E  D I F  L+++ L  LP+LTSF  G Y   FPSLE +
Sbjct: 1337 TLKIGGSDMMEEVVANE-GGETTDEITFYILQHMELLYLPNLTSFSSGGYIFSFPSLEQM 1395

Query: 311  VVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTKKKLF 360
            +V++CP MK+FS  +V  P+L ++K      GDDE   + +LN T   LF
Sbjct: 1396 LVKECPKMKMFSPSLVTTPRLERIKV-----GDDEWPLQDDLNTTIHNLF 1440

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.650	0.263	0.272	2.8e-06
TAIR|locus:2053405	1215	AT2G14080 [Arabidopsis thalian	0.680	0.203	0.270	1.9e-05
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.644	0.263	0.284	2.1e-05
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.385	0.144	0.313	2.4e-05
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.534	0.211	0.260	4e-05
WB|WBGene00015350	466	C02F5.7 [Caenorhabditis elegan	0.672	0.523	0.245	4e-05
TAIR|locus:2203881	893	AT1G62630 [Arabidopsis thalian	0.710	0.288	0.273	9.8e-05
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.798	0.319	0.236	0.0001
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.716	0.218	0.266	0.00011
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.528	0.096	0.282	0.00019

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 71/261 (27%), Positives = 120/261 (45%)

Query:    66 W-HNQALPVSF--FNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHL 122
             W + + LPV       LR+L LD  K + S    + I  L  L  L+ +   SL+  L +
Sbjct:   596 WTYIKRLPVGLQELKKLRYLRLDYMKRLKSISGISNISSLRKLQLLQSKM--SLDMSL-V 652

Query:   123 EELNADKEHL----CPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTR 178
             EEL    EHL      +   L   +L++ P+L + C      +++L    ++ +S+ +  
Sbjct:   653 EELQL-LEHLEVLNISIKSSLVVEKLLNAPRLVK-C------LQILVLRGVQEESSGVLT 704

Query:   179 LFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLL 238
             L  + +L K       +   +K +E    S      P + +L NL+T+ +S C GL +L 
Sbjct:   705 LPDMDNLNKVIIRKCGM-CEIK-IERKTLSLSSNRSPKTQFLHNLSTVHISSCDGLKDLT 762

Query:   239 TLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLG 298
              L  + +L +LE +   D +++E II  +        I F+KLE L L  L  L S    
Sbjct:   763 WLLFAPNLTSLEVL---DSELVEGIINQEKAMTMSGIIPFQKLESLRLHNLAMLRSIYW- 818

Query:   299 NYALEFPSLEHVVVRQCPTMK 319
                L FP L+ + + +CP ++
Sbjct:   819 -QPLSFPCLKTIHITKCPELR 838

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 76/281 (27%), Positives = 127/281 (45%)

Query:    54 IKLSLF-PRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRN 112
             ++L+++  +L+++W  +  P+    NL+ + L   KN+   +P   +    NL  L +  
Sbjct:   654 VELNMWGSKLEKLWE-EIQPL---RNLKRMDLFSSKNLKE-LPD--LSSATNLEVLNLNG 706

Query:   113 CDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPK-LKRFCNFTGNIIELLEC-NFIR 170
             C SL E L     NA K  L  L     S  L++LP  +    N     I+   C N + 
Sbjct:   707 CSSLVE-LPFSIGNATK--LLKLELSGCS-SLLELPSSIGNAINL--QTIDFSHCENLVE 760

Query:   171 IKSNL--MTRLFALQ----HLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLA 224
             + S++   T L  L       LKE   S     NLK L +  CS L++L  +     NL 
Sbjct:   761 LPSSIGNATNLKELDLSCCSSLKELPSSIGNCTNLKKLHLICCSSLKELPSSIGNCTNLK 820

Query:   225 TLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYL 284
              L ++ C  LI L   S+  + +NLE++ ++ C+ + E+  S +G+     I+   L YL
Sbjct:   821 ELHLTCCSSLIKLP--SSIGNAINLEKLILAGCESLVEL-PSFIGKATNLKIL--NLGYL 875

Query:   285 GLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV 325
                CL  L SF +GN       L  + +R C  +++    +
Sbjct:   876 S--CLVELPSF-IGN----LHKLSELRLRGCKKLQVLPTNI 909

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 72/253 (28%), Positives = 117/253 (46%)

Query:    71 LPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKE 130
             LPV  +  L+ L+  + ++MSS      I  L NL +L +R+   L ++  ++EL    E
Sbjct:   602 LPVGLWT-LKKLIHLNLEHMSSLGSILGISNLWNLRTLGLRDSRLLLDMSLVKELQL-LE 659

Query:   131 HLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELL-ECNFIRIKSNLMTRLFALQHL--LK 187
             HL  +     S  L+  P L   C+    ++E + E +F  +K   + R+  L  +  L+
Sbjct:   660 HL-EVITLDISSSLVAEPLL---CS--QRLVECIKEVDFKYLKEESV-RVLTLPTMGNLR 712

Query:   188 ENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLV 247
             +          +K    +  S   K     C+  NL+ + ++KCHGL +L  L  + +L 
Sbjct:   713 KLGIKRCGMREIKIERTTSSSSRNKSPTTPCF-SNLSRVFIAKCHGLKDLTWLLFAPNLT 771

Query:   248 NLERMKMSDCKMMEEIIQSQVGEEAEDCIV-FRKLEYLGLDCLPSLTSFCLGNYALEFPS 306
              LE   +   K +E+II  +  EE    IV FRKLE L L  L  L        AL FP 
Sbjct:   772 FLE---VGFSKEVEDIISEEKAEEHSATIVPFRKLETLHLFELRGLKRIYAK--ALHFPC 826

Query:   307 LEHVVVRQCPTMK 319
             L+ + V +C  ++
Sbjct:   827 LKVIHVEKCEKLR 839

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 47/150 (31%), Positives = 71/150 (47%)

Query:   182 LQHLLKENAESNKVFANLKSLEI-SECSQLQKLVPASCYLENLATLEVSKCHGLINLLTL 240
             L  LL EN+  +++  N+K  E  +E S L       C+  NL  L + KCH + +L  +
Sbjct:   705 LYGLLVENSYFSEI--NIKCRESETESSYLHINPKIPCFT-NLTGLIIMKCHSMKDLTWI 761

Query:   241 STSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIV-FRKLEYLGLDCLPSLTSFCLGN 299
               + +LVNL+   + D + + EII  +        I  F+KLE L L  LP L S     
Sbjct:   762 LFAPNLVNLD---IRDSREVGEIINKEKAINLTSIITPFQKLERLFLYGLPKLESIYWS- 817

Query:   300 YALEFPSLEHVVVRQCPTMKIFSQGVVDAP 329
               L FP L ++VV+ CP ++         P
Sbjct:   818 -PLPFPLLSNIVVKYCPKLRKLPLNATSVP 846

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
 Identities = 55/211 (26%), Positives = 92/211 (43%)

Query:   117 EEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLM 176
             E  L + ++N     +  L   + SL   DL   +       N++   + +F+ +K+ L 
Sbjct:   692 EGCLAISDVNVSNASIGWLLQHVTSL---DLNYCEGLNGMFENLVTKSKSSFVAMKA-LS 747

Query:   177 TRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYL----ENLATLEVSKCH 232
                F    L         +F NL+ L +   + L+ +   + +L    + L  L+VS C 
Sbjct:   748 IHYFPSLSLASGCESQLDLFPNLEELSLDNVN-LESIGELNGFLGMRLQKLKLLQVSGCR 806

Query:   233 GLINLLTLST-SESLVNLERMKMSDCKMMEEIIQ-SQVGEE--AEDCIVFRKLEYLGLDC 288
              L  L +    + +L NL+ +K+  C  +EE+   S V  +  AE  +   KL  + L  
Sbjct:   807 QLKRLFSDQILAGTLPNLQEIKVVSCLRLEELFNFSSVPVDFCAESLLP--KLTVIKLKY 864

Query:   289 LPSLTSFCLGNYALEFPSLEHVVVRQCPTMK 319
             LP L S C     LE  SLEH+ V  C ++K
Sbjct:   865 LPQLRSLCNDRVVLE--SLEHLEVESCESLK 893

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

WB|WBGene00015350 C02F5.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 127 (49.8 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 66/269 (24%), Positives = 115/269 (42%)

Query:    67 HNQALPV--SFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEE--VLHL 122
             H+ AL    S   NL HL L  CK ++ A   NL R  + L  L + NC S+ +  + ++
Sbjct:   137 HDSALRTFTSRCPNLEHLSLYRCKRVTDASCENLGRYCHKLNYLNLENCSSITDRAMKYI 196

Query:   123 EELNADKEHL----CPLFPK------LFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIK 172
              +   +  +L    C           L + + +D   L+     T N+   +E +   IK
Sbjct:   197 GDGCPNLSYLNISWCDAIQDRGVQIILSNCKSLDTLILRGCEGLTENVFGSVEAHMGAIK 256

Query:   173 SNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQL--QKLVPASCYLENLATLEVSK 230
                + + F L  +  +N  +N   A L+ L +S C+Q+  + LV    +  NL  LE+S 
Sbjct:   257 KLNLLQCFQLTDITVQNI-ANGATA-LEYLCMSNCNQISDRSLVSLGQHSHNLKVLELSG 314

Query:   231 CHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLP 290
             C  L +   +  +     LER+ M DC ++ +     +   A +C   R+L    L    
Sbjct:   315 CTLLGDNGFIPLARGCRQLERLDMEDCSLISD---HTINSLANNCTALRELS---LSHCE 368

Query:   291 SLTSFCLGNYALEFPSLEHVV-VRQCPTM 318
              +T   + N A +     +V+ +  CP +
Sbjct:   369 LITDESIQNLASKHRETLNVLELDNCPQL 397

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

TAIR|locus:2203881 AT1G62630 [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 9.8e-05, P = 9.8e-05
 Identities = 80/292 (27%), Positives = 125/292 (42%)

Query:    50 DIENIKLSLF---PRLK--EIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNN 104
             +I+ I    F   P+L   ++ HNQ+L       + +LV     N+S     +L + +  
Sbjct:   557 EIKTISSEFFNCMPKLAVLDLSHNQSL-FELPEEISNLVSLKYLNLSHTGIRHLSKGIQE 615

Query:   105 LASLEVRNCDSLEEVLHLEELNADKE-HLCPLFPKLFSLRLI-DLPKLKRFCNFTGNIIE 162
             L  +   N   LE    LE ++     H   +  KL+  RL  DL  +K     T   +E
Sbjct:   616 LKKIIHLN---LEHTSKLESIDGISSLHNLKVL-KLYGSRLPWDLNTVKEL--ETLEHLE 669

Query:   163 LLECNFI-RIKSNLMT-RLFALQHLLK----------ENAESNKVFAN-LKSLEISECSQ 209
             +L      R K  L + RL +   LL+             ES  V  + L+  EI  CS 
Sbjct:   670 ILTTTIDPRAKQFLSSHRLMSRSRLLQIFGSNIFSPDRQLESLSVSTDKLREFEIMCCSI 729

Query:   210 LQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVG 269
              +  +   C   +L  + +  C GL  L  L  +  L +L    + D K +E+II  +  
Sbjct:   730 SEIKMGGICNFLSLVDVTIYNCEGLRELTFLIFAPKLRSLS---VVDAKDLEDIINEEKA 786

Query:   270 EEAEDC-IV-FRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMK 319
              E ED  IV F +L+YL LD LP L +  +    L F  LE + + +CP ++
Sbjct:   787 CEGEDSGIVPFPELKYLNLDDLPKLKN--IYRRPLPFLCLEKITIGECPNLR 836

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 76/322 (23%), Positives = 136/322 (42%)

Query:     9 LSTPKLHKVQVTVKEEGELYH--REGNLNSTI-QKC-YIEMIGFRDIENIK-LSLFPRLK 63
             LS   + ++ +++K   ELYH    G   S + Q+   +  +   D++  + L   PR  
Sbjct:   565 LSFTSITEIPLSIKYLVELYHLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDA 624

Query:    64 EIWHNQALPVSFFNNLRHLVLDDC-KNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHL 122
               W ++   ++ + +     L    ++ +  +    +  L NL +L +    SLE +  L
Sbjct:   625 ICWLSKLEVLNLYYSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITVL-SLETLKTL 683

Query:   123 EELNADKEHLCPLF-PKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFA 181
              E  A  +H+  L   +   L   +LP L    N   N+  L       IKS        
Sbjct:   684 FEFGALHKHIQHLHVEECNELLYFNLPSLT---NHGRNLRRL------SIKS-----CHD 729

Query:   182 LQHLLKENAESNKVFANLKSLEISECSQLQKL----VPASCYLENLATLEVSKCHGLINL 237
             L++L+      N    +L+ L +     L ++    V   C L N+  + +S C+ L N+
Sbjct:   730 LEYLVTPADFENDWLPSLEVLTLHSLHNLTRVWGNSVSQDC-LRNIRCINISHCNKLKNV 788

Query:   238 LTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCL 297
                S  + L  LE +++ DC+ +EE+I        ED  +F  L+ L    LP L S   
Sbjct:   789 ---SWVQKLPKLEVIELFDCREIEELISEHESPSVEDPTLFPSLKTLRTRDLPELNSILP 845

Query:   298 GNYALEFPSLEHVVVRQCPTMK 319
               ++  F  +E +V+  CP +K
Sbjct:   846 SRFS--FQKVETLVITNCPRVK 865

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 0.00011, P = 0.00011
 Identities = 81/304 (26%), Positives = 138/304 (45%)

Query:    34 LNSTIQKCYIEMIGFRDIENIK---LSLFPRLKEIWHNQALP-VSFFNNLRHLVLDDCKN 89
             LN T  K  +   G + + N++   LS    LKE      LP +S   NLR L+L +C +
Sbjct:   658 LNLTHSKLDMLWEGVKPLHNLRQMDLSYSVNLKE------LPDLSTAINLRKLILSNCSS 711

Query:    90 MSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPK 149
             +   +P+ +   +N L  L++  C SL E+        D  +L  L  +  S  L++LP 
Sbjct:   712 LIK-LPSCIGNAIN-LEDLDLNGCSSLVELPSF----GDAINLQKLLLRYCS-NLVELPS 764

Query:   150 -LKRFCNFTGNIIELLECN-FIRIKSN-------LMTRLFALQHLLK-ENAESNKVFANL 199
              +    N     ++L  C+  IR+ S+       L+  L    +LL+  ++  N +  NL
Sbjct:   765 SIGNAINLRE--LDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAI--NL 820

Query:   200 KSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKM 259
             + L++  C++L +L  +     NL  L +  C  L+ L   S+  +  NL  M +S+C  
Sbjct:   821 QKLDLRRCAKLLELPSSIGNAINLQNLLLDDCSSLLELP--SSIGNATNLVYMNLSNCSN 878

Query:   260 MEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMK 319
             + E+  S +G         +KL+ L L     L    + N  LE  SL+ +V+  C  +K
Sbjct:   879 LVELPLS-IGN-------LQKLQELILKGCSKLEDLPI-NINLE--SLDILVLNDCSMLK 927

Query:   320 IFSQ 323
              F +
Sbjct:   928 RFPE 931

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 0.00019, P = 0.00019
 Identities = 58/205 (28%), Positives = 91/205 (44%)

Query:    73 VSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHL--EELNADKE 130
             V     L+ L L  C ++   +P+   + +  L SL++  C SL E+       +N    
Sbjct:   707 VGKLGKLQVLCLHGCTSILE-LPS-FTKNVTGLQSLDLNECSSLVELPSSIGNAINLQNL 764

Query:   131 HL-CPLFPKLFSLRLIDLPKLKRFC-NFTGNIIELLECNFIRIKSNLMTRLFALQHLLKE 188
              L C    KL  L ++    LK+F  N   +++EL    F+   +NL          L E
Sbjct:   765 DLGCLRLLKL-PLSIVKFTNLKKFILNGCSSLVEL---PFMGNATNLQNLDLGNCSSLVE 820

Query:   189 NAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVN 248
                S     NL++L++S CS L KL        NL  L++ KC  L+ + T S    + N
Sbjct:   821 LPSSIGNAINLQNLDLSNCSSLVKLPSFIGNATNLEILDLRKCSSLVEIPT-SIGH-VTN 878

Query:   249 LERMKMSDCKMMEEIIQSQVGEEAE 273
             L R+ +S C  + E+  S VG  +E
Sbjct:   879 LWRLDLSGCSSLVEL-PSSVGNISE 902

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	363
PLN03210	1153	PLN03210, PLN03210, Resistant to P	4e-05

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 64/227 (28%), Positives = 98/227 (43%), Gaps = 41/227 (18%)

Query: 48  FRDIENIKLSLFPRLKEIWHNQALP-VSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLA 106
              + NI L     LKEI      P +S   NL  L L DC ++   +P++ I+ LN L 
Sbjct: 633 LTGLRNIDLRGSKNLKEI------PDLSMATNLETLKLSDCSSLVE-LPSS-IQYLNKLE 684

Query: 107 SLEVRNCDSLEEV---LHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIEL 163
            L++  C++LE +   ++L+ L              + L L    +LK F + + NI  L
Sbjct: 685 DLDMSRCENLEILPTGINLKSL--------------YRLNLSGCSRLKSFPDISTNISWL 730

Query: 164 L--ECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLK-----------SLEISECSQL 210
              E       SNL  RL  L  L+    +S K++  ++           SL     S +
Sbjct: 731 DLDETAIEEFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788

Query: 211 QKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDC 257
             LV     ++NL  LE  +    INL TL T  +L +LE + +S C
Sbjct: 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGC 835

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	363
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.82
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.72
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.7
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.67
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.66
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.46
KOG4341	483	consensus F-box protein containing LRR [General fu	99.45
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.33
KOG4341	483	consensus F-box protein containing LRR [General fu	99.26
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.16
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.14
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.1
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.06
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.01
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.01
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.96
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.92
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.81
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.71
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.65
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.63
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.56
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.47
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.44
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.4
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.29
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.26
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.26
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.17
PRK15386	426	type III secretion protein GogB; Provisional	97.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.88
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.8
PRK15386	426	type III secretion protein GogB; Provisional	97.8
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.74
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.71
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.47
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.32
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.28
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.17
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.03
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.99
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	96.87
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.69
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.67
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.64
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.63
PLN03150	623	hypothetical protein; Provisional	96.62
PLN03150	623	hypothetical protein; Provisional	96.61
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.55
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.35
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.15
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.06
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.92
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.61
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.29
KOG2982	418	consensus Uncharacterized conserved protein [Funct	92.18
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	91.53
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	91.25
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	90.99
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.16
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	90.08
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	89.96
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	89.38
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	89.3
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	88.52
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	88.31
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	87.05
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	86.27
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	85.31
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	81.72

>PLN03210 Resistant to P

Probab=99.82  E-value=1.2e-19  Score=193.47  Aligned_cols=267  Identities=24%  Similarity=0.330  Sum_probs=188.1

Q ss_pred             hhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCc
Q 038945           37 TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSL  116 (363)
Q Consensus        37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l  116 (363)
                      .+.++|.....+++|+.|+++++..++.+|..     ..+++|+.|++.+|..+.. .|.. ++.+++|+.|++++|..+
T Consensus       622 ~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l-----s~l~~Le~L~L~~c~~L~~-lp~s-i~~L~~L~~L~L~~c~~L  694 (1153)
T PLN03210        622 KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL-----SMATNLETLKLSDCSSLVE-LPSS-IQYLNKLEDLDMSRCENL  694 (1153)
T ss_pred             cccccccccccCCCCCEEECCCCCCcCcCCcc-----ccCCcccEEEecCCCCccc-cchh-hhccCCCCEEeCCCCCCc
Confidence            45667777778899999999988878876642     3689999999999988775 5544 888999999999999888


Q ss_pred             ceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhh------hccccch--hhHH-HHHHhhh--hh
Q 038945          117 EEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLE------CNFIRIK--SNLM-TRLFALQ--HL  185 (363)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~------~~~~~l~--~~L~-l~~~~~~--~l  185 (363)
                      +.++..           ..+++|+.|++++|..++.++.... .|+.+.      ..+|...  ++|. +.+..+.  .+
T Consensus       695 ~~Lp~~-----------i~l~sL~~L~Lsgc~~L~~~p~~~~-nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l  762 (1153)
T PLN03210        695 EILPTG-----------INLKSLYRLNLSGCSRLKSFPDIST-NISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKL  762 (1153)
T ss_pred             CccCCc-----------CCCCCCCEEeCCCCCCccccccccC-CcCeeecCCCccccccccccccccccccccccchhhc
Confidence            877631           1578899999999987776643321 333332      1111100  0111 1111100  00


Q ss_pred             hhh----cccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchh
Q 038945          186 LKE----NAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMME  261 (363)
Q Consensus       186 ~~~----~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~  261 (363)
                      ...    .......+++|+.|++++|+.+..+|..+..+++|+.|++++|..++.+|..  . .+++|+.|++++|..+.
T Consensus       763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~-~L~sL~~L~Ls~c~~L~  839 (1153)
T PLN03210        763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG--I-NLESLESLDLSGCSRLR  839 (1153)
T ss_pred             cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC--C-CccccCEEECCCCCccc
Confidence            000    0001123468999999999988888888889999999999999999988754  2 68999999999998876


Q ss_pred             hhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          262 EIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      .++.           ..++|+.|++.++ .++.++..  ...+++|+.|++.+|++++.+|..+..+++|+.++++++
T Consensus       840 ~~p~-----------~~~nL~~L~Ls~n-~i~~iP~s--i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        840 TFPD-----------ISTNISDLNLSRT-GIEEVPWW--IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             cccc-----------cccccCEeECCCC-CCccChHH--HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            5432           1357888888773 66666655  666788888888888888888887778888888888776

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.72  E-value=7.7e-17  Score=172.16  Aligned_cols=261  Identities=20%  Similarity=0.244  Sum_probs=173.0

Q ss_pred             hhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCccee
Q 038945           40 KCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEV  119 (363)
Q Consensus        40 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~  119 (363)
                      .+|..+ .+.+|++|+++++. ++.+|.+.    ..+++|+.|++++|.++.. .|.  +..+++|+.|++.+|..+..+
T Consensus       603 ~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~----~~l~~Lk~L~Ls~~~~l~~-ip~--ls~l~~Le~L~L~~c~~L~~l  673 (1153)
T PLN03210        603 CMPSNF-RPENLVKLQMQGSK-LEKLWDGV----HSLTGLRNIDLRGSKNLKE-IPD--LSMATNLETLKLSDCSSLVEL  673 (1153)
T ss_pred             CCCCcC-CccCCcEEECcCcc-cccccccc----ccCCCCCEEECCCCCCcCc-CCc--cccCCcccEEEecCCCCcccc
Confidence            344443 35789999999986 88888777    6899999999999877765 443  788999999999999988776


Q ss_pred             cccccccccccccCCCCCccceeecccccccccccCccc-chhhhhh-hccccch------hhHH-HHHHhhhhhhhhcc
Q 038945          120 LHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTG-NIIELLE-CNFIRIK------SNLM-TRLFALQHLLKENA  190 (363)
Q Consensus       120 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~-~~L~~l~-~~~~~l~------~~L~-l~~~~~~~l~~~~~  190 (363)
                      +..          ...+++|+.|++++|.+++.++.... ..|..+. ..|..+.      ++|. +.+ ....+  ...
T Consensus       674 p~s----------i~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L-~~n~i--~~l  740 (1153)
T PLN03210        674 PSS----------IQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDL-DETAI--EEF  740 (1153)
T ss_pred             chh----------hhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeec-CCCcc--ccc
Confidence            532          23688999999999998888765331 1233332 3333222      1111 000 00011  111


Q ss_pred             cccccCCCccEEEeccCcCcc------cc-cccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhh
Q 038945          191 ESNKVFANLKSLEISECSQLQ------KL-VPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEI  263 (363)
Q Consensus       191 ~~l~~l~~L~~L~l~~c~~l~------~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  263 (363)
                      +....+++|++|.+.++....      .+ +.....+++|+.|++++|+.+..+|..  ++++++|+.|++++|..++.+
T Consensus       741 P~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s--i~~L~~L~~L~Ls~C~~L~~L  818 (1153)
T PLN03210        741 PSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS--IQNLHKLEHLEIENCINLETL  818 (1153)
T ss_pred             cccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh--hhCCCCCCEEECCCCCCcCee
Confidence            111234555555555432110      00 001123467888888888877777654  678888999999888877765


Q ss_pred             hccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          264 IQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       264 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      +..         ..+++|+.|++++|..+..++..     .++|+.|+++++ .++.+|..+..+++|+.|+++++
T Consensus       819 P~~---------~~L~sL~~L~Ls~c~~L~~~p~~-----~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        819 PTG---------INLESLESLDLSGCSRLRTFPDI-----STNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             CCC---------CCccccCEEECCCCCcccccccc-----ccccCEeECCCC-CCccChHHHhcCCCCCEEECCCC
Confidence            432         25788889999988888776543     467888888654 77888888889999999999875

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.70  E-value=5.7e-17  Score=171.71  Aligned_cols=286  Identities=16%  Similarity=0.115  Sum_probs=129.5

Q ss_pred             ccccCCCceeEEEeeecccceeeeccCCCchhhhhhhccc-cccccceEecccCcCcccccccCcCCCCCCCCccEEEec
Q 038945            7 GILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMI-GFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLD   85 (363)
Q Consensus         7 ~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~   85 (363)
                      .+..+|+|+.|+++.          ..+.   ..+|..+. .+++|++|+++++. +..    . .+.+.+++|++|+++
T Consensus        88 ~~~~l~~L~~L~Ls~----------n~~~---~~ip~~~~~~l~~L~~L~Ls~n~-l~~----~-~p~~~l~~L~~L~Ls  148 (968)
T PLN00113         88 AIFRLPYIQTINLSN----------NQLS---GPIPDDIFTTSSSLRYLNLSNNN-FTG----S-IPRGSIPNLETLDLS  148 (968)
T ss_pred             HHhCCCCCCEEECCC----------CccC---CcCChHHhccCCCCCEEECcCCc-ccc----c-cCccccCCCCEEECc
Confidence            345566666666661          1111   12444433 56777777777765 432    0 233457778888877


Q ss_pred             CCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhh
Q 038945           86 DCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLE  165 (363)
Q Consensus        86 ~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~  165 (363)
                      +| .+....|.. ++.+++|++|++++|.....++..          ...+++|+.|+++++.-...++....       
T Consensus       149 ~n-~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~----------~~~l~~L~~L~L~~n~l~~~~p~~l~-------  209 (968)
T PLN00113        149 NN-MLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNS----------LTNLTSLEFLTLASNQLVGQIPRELG-------  209 (968)
T ss_pred             CC-cccccCChH-HhcCCCCCEEECccCcccccCChh----------hhhCcCCCeeeccCCCCcCcCChHHc-------
Confidence            76 344445554 677788888888776533232210          22456667776665532111111000       


Q ss_pred             hccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhh
Q 038945          166 CNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSES  245 (363)
Q Consensus       166 ~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  245 (363)
                          ++. +|+.-.....++....+..+..+++|+.|++++|.....+|..+..+++|+.|+++++.-...+|.  .+..
T Consensus       210 ----~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~  282 (968)
T PLN00113        210 ----QMK-SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP--SIFS  282 (968)
T ss_pred             ----CcC-CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch--hHhh
Confidence                000 111000011112222233444555555555555543334444444555555555555432222221  1334


Q ss_pred             ccccCeEeeccCcchhhhhccC----------------ccccccccccccccceecccccccccccCCCCcccCCCCccE
Q 038945          246 LVNLERMKMSDCKMMEEIIQSQ----------------VGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEH  309 (363)
Q Consensus       246 l~~L~~L~l~~c~~l~~~~~~~----------------~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~  309 (363)
                      +++|+.|++++|.....++..-                .+.....+..+++|+.|++++|.-...++..  ...+++|+.
T Consensus       283 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~~~~L~~  360 (968)
T PLN00113        283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN--LGKHNNLTV  360 (968)
T ss_pred             ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH--HhCCCCCcE
Confidence            5555555555543211111000                0000111233455555555554322223322  334455555


Q ss_pred             EeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          310 VVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       310 L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      |++++|.-...+|..+..+++|+.++++.|
T Consensus       361 L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n  390 (968)
T PLN00113        361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSN  390 (968)
T ss_pred             EECCCCeeEeeCChhHhCcCCCCEEECcCC
Confidence            555544333344444455555555555555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.67  E-value=3.5e-18  Score=161.69  Aligned_cols=290  Identities=18%  Similarity=0.186  Sum_probs=193.4

Q ss_pred             CchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCC
Q 038945           35 NSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCD  114 (363)
Q Consensus        35 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~  114 (363)
                      .+.+..+|+++..+.+|++|.+.++. +..+....    ..+|.|+.+.++.+.--..-+|.+ +-++..|..|+++++ 
T Consensus        41 rt~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGEL----s~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN-  113 (1255)
T KOG0444|consen   41 RTKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGEL----SDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN-  113 (1255)
T ss_pred             hhhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhh----ccchhhHHHhhhccccccCCCCch-hcccccceeeecchh-
Confidence            35677899999999999999999987 77654444    578999999999874333445666 667899999999875 


Q ss_pred             Ccceecccccc-----------cccccccCCCCCccc---eeecccccccccccCcccc------------hhhhhh-hc
Q 038945          115 SLEEVLHLEEL-----------NADKEHLCPLFPKLF---SLRLIDLPKLKRFCNFTGN------------IIELLE-CN  167 (363)
Q Consensus       115 ~l~~~~~~~~~-----------~~~~~~~~~~l~~L~---~L~l~~~~~L~~l~~~~~~------------~L~~l~-~~  167 (363)
                      ++.++|..-+.           +...++...-|-+|+   .|++++ .+|+.++++..+            -|.+.. ++
T Consensus       114 qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ  192 (1255)
T KOG0444|consen  114 QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ  192 (1255)
T ss_pred             hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc
Confidence            46666542110           111111111223333   334443 234444333320            122222 66


Q ss_pred             cccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhcc
Q 038945          168 FIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLV  247 (363)
Q Consensus       168 ~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~  247 (363)
                      .|++++--.+++.+.+.-....+.++..+.+|..++++++ .+..+|..+..+++|+.|.+++. .++.+...  .+.-.
T Consensus       193 LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~--~~~W~  268 (1255)
T KOG0444|consen  193 LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGN-KITELNMT--EGEWE  268 (1255)
T ss_pred             CccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcC-ceeeeecc--HHHHh
Confidence            7777733338888888888888999999999999999965 48888888889999999999874 44444221  22223


Q ss_pred             ccCeEeeccCc------------chhhhhccCc----cccccccccccccceecccccccccccCCCCcccCCCCccEEe
Q 038945          248 NLERMKMSDCK------------MMEEIIQSQV----GEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVV  311 (363)
Q Consensus       248 ~L~~L~l~~c~------------~l~~~~~~~~----~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~  311 (363)
                      +|+.|+++++.            .++.++....    ...+..++.+..|+.++..+ ..++-+|.+  ...|++|+.|.
T Consensus       269 ~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEg--lcRC~kL~kL~  345 (1255)
T KOG0444|consen  269 NLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEG--LCRCVKLQKLK  345 (1255)
T ss_pred             hhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchh--hhhhHHHHHhc
Confidence            44444444321            1111111110    00223367788888888887 578888888  89999999999


Q ss_pred             eccCCCcccccCCCcCCCCcceeecccCC
Q 038945          312 VRQCPTMKIFSQGVVDAPKLNKVKPTEEE  340 (363)
Q Consensus       312 l~~c~~l~~l~~~~~~~~~L~~L~i~~~~  340 (363)
                      + +|+.+..+|.++.-+|.|+.|++.+|+
T Consensus       346 L-~~NrLiTLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  346 L-DHNRLITLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             c-cccceeechhhhhhcCCcceeeccCCc
Confidence            9 888999999999999999999999983

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.66  E-value=5e-16  Score=164.57  Aligned_cols=289  Identities=16%  Similarity=0.068  Sum_probs=146.6

Q ss_pred             ccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCC
Q 038945            9 LSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCK   88 (363)
Q Consensus         9 ~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~   88 (363)
                      ..+++|++|+++.          ..+.   ..+|..+..+++|++|+++++.-...+|...    +.+++|++|++++|.
T Consensus       137 ~~l~~L~~L~Ls~----------n~~~---~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~----~~l~~L~~L~L~~n~  199 (968)
T PLN00113        137 GSIPNLETLDLSN----------NMLS---GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL----TNLTSLEFLTLASNQ  199 (968)
T ss_pred             cccCCCCEEECcC----------Cccc---ccCChHHhcCCCCCEEECccCcccccCChhh----hhCcCCCeeeccCCC
Confidence            4578888888882          1111   1345556667778888887775223334433    467777777777763


Q ss_pred             CCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCccc--chhhhhh-
Q 038945           89 NMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTG--NIIELLE-  165 (363)
Q Consensus        89 ~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~--~~L~~l~-  165 (363)
                       +....|.. ++.+++|+.|+++++.....++..          ...+++|+.|+++++.-...++....  +.|+.+. 
T Consensus       200 -l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~----------l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  267 (968)
T PLN00113        200 -LVGQIPRE-LGQMKSLKWIYLGYNNLSGEIPYE----------IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL  267 (968)
T ss_pred             -CcCcCChH-HcCcCCccEEECcCCccCCcCChh----------HhcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence             44445544 667777777777765432222210          12455666666655421111110000  0011110 


Q ss_pred             --hcc----c-cch--hhHH-HHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCcc
Q 038945          166 --CNF----I-RIK--SNLM-TRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLI  235 (363)
Q Consensus       166 --~~~----~-~l~--~~L~-l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~  235 (363)
                        ...    | .+.  ++|+ +.+ ...++....+..+..+++|+.|+++++.....+|..+..+++|+.|++++|.-..
T Consensus       268 ~~n~l~~~~p~~l~~l~~L~~L~L-s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  346 (968)
T PLN00113        268 YQNKLSGPIPPSIFSLQKLISLDL-SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG  346 (968)
T ss_pred             cCCeeeccCchhHhhccCcCEEEC-cCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC
Confidence              000    0 000  0000 000 0111122222334445555555555554444444444455555555555553332


Q ss_pred             ccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccC
Q 038945          236 NLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC  315 (363)
Q Consensus       236 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c  315 (363)
                      .+|.  .++.+++|+.|++++|.....+        ...+..+++|+.|++.++.-...++..  ...+++|+.|++++|
T Consensus       347 ~~p~--~l~~~~~L~~L~Ls~n~l~~~~--------p~~~~~~~~L~~L~l~~n~l~~~~p~~--~~~~~~L~~L~L~~n  414 (968)
T PLN00113        347 EIPK--NLGKHNNLTVLDLSTNNLTGEI--------PEGLCSSGNLFKLILFSNSLEGEIPKS--LGACRSLRRVRLQDN  414 (968)
T ss_pred             cCCh--HHhCCCCCcEEECCCCeeEeeC--------ChhHhCcCCCCEEECcCCEecccCCHH--HhCCCCCCEEECcCC
Confidence            3332  2344555555555554321111        111334566777777765433334333  556888999999888


Q ss_pred             CCcccccCCCcCCCCcceeecccC
Q 038945          316 PTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       316 ~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      .--..+|..+..+++|+.+++++|
T Consensus       415 ~l~~~~p~~~~~l~~L~~L~Ls~N  438 (968)
T PLN00113        415 SFSGELPSEFTKLPLVYFLDISNN  438 (968)
T ss_pred             EeeeECChhHhcCCCCCEEECcCC
Confidence            655567777788999999999987

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.46  E-value=3.1e-14  Score=134.31  Aligned_cols=134  Identities=15%  Similarity=0.203  Sum_probs=72.1

Q ss_pred             cccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccc
Q 038945          193 NKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEA  272 (363)
Q Consensus       193 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  272 (363)
                      +-++..|+.|+++.+..-+.-+....+++.|+.|+++. +.++.++..+ +..+..|+.|.++++. ++.+..+      
T Consensus       289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~s-f~~L~~Le~LnLs~Ns-i~~l~e~------  359 (873)
T KOG4194|consen  289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGS-FRVLSQLEELNLSHNS-IDHLAEG------  359 (873)
T ss_pred             ccccchhhhhccchhhhheeecchhhhcccceeEeccc-cccccCChhH-HHHHHHhhhhcccccc-hHHHHhh------
Confidence            44557777777776653333344556788999999987 4677776543 5577888888888753 3333211      


Q ss_pred             cccccccccceecccccc---cccccCCCCcccCCCCccEEeeccCCCcccccCCCc-CCCCcceeecccC
Q 038945          273 EDCIVFRKLEYLGLDCLP---SLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV-DAPKLNKVKPTEE  339 (363)
Q Consensus       273 ~~~~~l~~L~~L~l~~c~---~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~i~~~  339 (363)
                       ++..+++|+.|++....   .+++-...  +..+++|++|.+.+. +++++|.... .+++|+.|++.+|
T Consensus       360 -af~~lssL~~LdLr~N~ls~~IEDaa~~--f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  360 -AFVGLSSLHKLDLRSNELSWCIEDAAVA--FNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN  426 (873)
T ss_pred             -HHHHhhhhhhhcCcCCeEEEEEecchhh--hccchhhhheeecCc-eeeecchhhhccCcccceecCCCC
Confidence             12334555555554431   11221111  223455555555332 4555543222 5555555555555

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.45  E-value=3.7e-15  Score=135.33  Aligned_cols=282  Identities=18%  Similarity=0.211  Sum_probs=177.4

Q ss_pred             ccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccc
Q 038945           50 DIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADK  129 (363)
Q Consensus        50 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  129 (363)
                      .|+.|.+++|..+...+... +. ..+|++++|.+.+|.++++..-.++...+++|+.+.+..|..+.+..-        
T Consensus       139 ~lk~LSlrG~r~v~~sslrt-~~-~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L--------  208 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRT-FA-SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL--------  208 (483)
T ss_pred             ccccccccccccCCcchhhH-Hh-hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH--------
Confidence            47777777776655544333 22 367777777777777776666556566677777777777776655431        


Q ss_pred             cccCCCCCccceeecccccccccc-----cCcccchhhhhh-hccccch------------hhHHHHHHhhhhhhhhccc
Q 038945          130 EHLCPLFPKLFSLRLIDLPKLKRF-----CNFTGNIIELLE-CNFIRIK------------SNLMTRLFALQHLLKENAE  191 (363)
Q Consensus       130 ~~~~~~l~~L~~L~l~~~~~L~~l-----~~~~~~~L~~l~-~~~~~l~------------~~L~l~~~~~~~l~~~~~~  191 (363)
                      ...+.+|++|+.|++++|+.+..=     ..+.. .++.+. +.|..+.            ..+++.+..|..++++..-
T Consensus       209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~-~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~  287 (483)
T KOG4341|consen  209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCK-ELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW  287 (483)
T ss_pred             HHHHHhhhhHHHhhhccCchhhcCcchHHhccch-hhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH
Confidence            111336777777777777666540     00000 011111 1222222            0122344456556655544


Q ss_pred             cc-ccCCCccEEEeccCcCccccc--ccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhh-hccC
Q 038945          192 SN-KVFANLKSLEISECSQLQKLV--PASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEI-IQSQ  267 (363)
Q Consensus       192 ~l-~~l~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~  267 (363)
                      .+ .....|+.|+.++|..+.+.+  .-...+.+|+.|.+.+|..+++.....+..+.+.|+.+++.+|..+.+. +.. 
T Consensus       288 ~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s-  366 (483)
T KOG4341|consen  288 LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS-  366 (483)
T ss_pred             HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh-
Confidence            33 445688888888887766443  2345678999999999988888766666677889999999888765543 111 


Q ss_pred             ccccccccccccccceecccccccccccCCCC---cccCCCCccEEeeccCCCcccccC-CCcCCCCcceeecccCCCCC
Q 038945          268 VGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGN---YALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPKLNKVKPTEEEDGD  343 (363)
Q Consensus       268 ~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~---~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~i~~~~~~~  343 (363)
                            .-.++|.|+.+.++.|..+++.....   .......|+.+.+.+|+.++.... -+.++++|+.+++.+.    
T Consensus       367 ------ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~----  436 (483)
T KOG4341|consen  367 ------LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC----  436 (483)
T ss_pred             ------hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech----
Confidence                  12468999999999998877662211   134466899999999999885543 3448899999999988    


Q ss_pred             CccccCCcchHHHHH
Q 038945          344 DEGCWEGNLNDTKKK  358 (363)
Q Consensus       344 ~~~~~~~~~~~~~~~  358 (363)
                           ++--++.|++
T Consensus       437 -----q~vtk~~i~~  446 (483)
T KOG4341|consen  437 -----QDVTKEAISR  446 (483)
T ss_pred             -----hhhhhhhhHH
Confidence                 5555555543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.33  E-value=3.8e-13  Score=127.04  Aligned_cols=271  Identities=17%  Similarity=0.191  Sum_probs=159.7

Q ss_pred             cccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccccc
Q 038945           49 RDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNAD  128 (363)
Q Consensus        49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  128 (363)
                      .++++|+|+++. ++.+..+.   ...+.+|..|.++.+ .++. +|...+++++.|+.|++..+ .++.+...      
T Consensus       173 ~ni~~L~La~N~-It~l~~~~---F~~lnsL~tlkLsrN-ritt-Lp~r~Fk~L~~L~~LdLnrN-~irive~l------  239 (873)
T KOG4194|consen  173 VNIKKLNLASNR-ITTLETGH---FDSLNSLLTLKLSRN-RITT-LPQRSFKRLPKLESLDLNRN-RIRIVEGL------  239 (873)
T ss_pred             CCceEEeecccc-cccccccc---ccccchheeeecccC-cccc-cCHHHhhhcchhhhhhcccc-ceeeehhh------
Confidence            457777777765 66543222   245667888888776 4554 45455888888888888753 34433111      


Q ss_pred             ccccCCCCCccceeecc-------------cccccccccCcccchhhhhh-hccccchhhHHHHHHhhhhhhhhcccccc
Q 038945          129 KEHLCPLFPKLFSLRLI-------------DLPKLKRFCNFTGNIIELLE-CNFIRIKSNLMTRLFALQHLLKENAESNK  194 (363)
Q Consensus       129 ~~~~~~~l~~L~~L~l~-------------~~~~L~~l~~~~~~~L~~l~-~~~~~l~~~L~l~~~~~~~l~~~~~~~l~  194 (363)
                         +..++++|+.|.+.             +|.+++.+....+ .+..+. ...-+++ +|+....+.+.+..-++.+-.
T Consensus       240 ---tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt-~L~~L~lS~NaI~rih~d~Ws  314 (873)
T KOG4194|consen  240 ---TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLT-SLEQLDLSYNAIQRIHIDSWS  314 (873)
T ss_pred             ---hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccc-hhhhhccchhhhheeecchhh
Confidence               12345555555442             2333333222221 111111 1111222 222111111222222233344


Q ss_pred             cCCCccEEEeccCcCcccc-cccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccc
Q 038945          195 VFANLKSLEISECSQLQKL-VPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAE  273 (363)
Q Consensus       195 ~l~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  273 (363)
                      -.++|+.|+++.+. +..+ +..+..++.|+.|.++. ++++.+.. +.+..+.+|+.|++.++.- .-.+.  +  ...
T Consensus       315 ftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e-~af~~lssL~~LdLr~N~l-s~~IE--D--aa~  386 (873)
T KOG4194|consen  315 FTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSH-NSIDHLAE-GAFVGLSSLHKLDLRSNEL-SWCIE--D--AAV  386 (873)
T ss_pred             hcccceeEeccccc-cccCChhHHHHHHHhhhhcccc-cchHHHHh-hHHHHhhhhhhhcCcCCeE-EEEEe--c--chh
Confidence            45899999999876 4444 34566788999999987 46777654 3466889999999988642 11111  1  223


Q ss_pred             ccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCC-cCCCCcceeecccC-CCCCCccccC
Q 038945          274 DCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE-EDGDDEGCWE  349 (363)
Q Consensus       274 ~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~i~~~-~~~~~~~~~~  349 (363)
                      .+..+++|+.|.+.+ ..++.++..+ +..+++|++|++.+. .+.++-... .++ .|++|.+..- -=||+.+.|-
T Consensus       387 ~f~gl~~LrkL~l~g-Nqlk~I~krA-fsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl  460 (873)
T KOG4194|consen  387 AFNGLPSLRKLRLTG-NQLKSIPKRA-FSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWL  460 (873)
T ss_pred             hhccchhhhheeecC-ceeeecchhh-hccCcccceecCCCC-cceeecccccccc-hhhhhhhcccceEEeccHHHH
Confidence            356799999999999 4889888765 677999999999555 555555444 466 9999998877 3344455553

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.26  E-value=2.2e-13  Score=123.96  Aligned_cols=240  Identities=16%  Similarity=0.208  Sum_probs=158.9

Q ss_pred             CCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCc
Q 038945           77 NNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNF  156 (363)
Q Consensus        77 ~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~  156 (363)
                      .-|+.|.+++|.............++|++++|.+.+|..+.+..-        ...+..|++|+.+++..|..+++.   
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~--------~sla~~C~~l~~l~L~~c~~iT~~---  206 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSL--------LSLARYCRKLRHLNLHSCSSITDV---  206 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHH--------HHHHHhcchhhhhhhcccchhHHH---
Confidence            369999999999888777777788999999999999997765431        112447999999999999999885   


Q ss_pred             ccchhhhhhhccccchhhHHHHHHhhhhhhhhccccc-ccCCC--------------------------ccEEEeccCcC
Q 038945          157 TGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESN-KVFAN--------------------------LKSLEISECSQ  209 (363)
Q Consensus       157 ~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l-~~l~~--------------------------L~~L~l~~c~~  209 (363)
                         .|..+...|+++.   .+.+.-++.+..+.+..+ .+...                          +.++++.+|..
T Consensus       207 ---~Lk~la~gC~kL~---~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~  280 (483)
T KOG4341|consen  207 ---SLKYLAEGCRKLK---YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ  280 (483)
T ss_pred             ---HHHHHHHhhhhHH---HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence               5666666676665   222333333333333221 22233                          33344445544


Q ss_pred             cccc--cccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceeccc
Q 038945          210 LQKL--VPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLD  287 (363)
Q Consensus       210 l~~l--~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~  287 (363)
                      +++.  +..-..+..|+.|+.++|..+++.+....-+..++|+.+.+..|.++.+.-..      ..-.+.+.|+.+++.
T Consensus       281 lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft------~l~rn~~~Le~l~~e  354 (483)
T KOG4341|consen  281 LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT------MLGRNCPHLERLDLE  354 (483)
T ss_pred             ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh------hhhcCChhhhhhccc
Confidence            4333  22223567788888888888877766666667788888888888876654221      112357788888888


Q ss_pred             ccccccccCCCCcccCCCCccEEeeccCCCcccc-----cCCCcCCCCcceeecccC
Q 038945          288 CLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIF-----SQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       288 ~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-----~~~~~~~~~L~~L~i~~~  339 (363)
                      +|-...+-........||.|+.+.++.|..+++.     .....++..|..+++++.
T Consensus       355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~  411 (483)
T KOG4341|consen  355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNC  411 (483)
T ss_pred             ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCC
Confidence            8755544322223556888999999888877765     334446777888888766

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.16  E-value=2.2e-10  Score=115.86  Aligned_cols=114  Identities=17%  Similarity=0.143  Sum_probs=81.6

Q ss_pred             CCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccc
Q 038945          197 ANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCI  276 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  276 (363)
                      .+|+.|+++++. ++.+|..   .++|+.|+++++ .+..+|.     ..++|+.|+++++. +..++.           
T Consensus       342 ~~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N-~L~~LP~-----l~~~L~~LdLs~N~-Lt~LP~-----------  399 (788)
T PRK15387        342 SGLQELSVSDNQ-LASLPTL---PSELYKLWAYNN-RLTSLPA-----LPSGLKELIVSGNR-LTSLPV-----------  399 (788)
T ss_pred             cccceEecCCCc-cCCCCCC---Ccccceehhhcc-ccccCcc-----cccccceEEecCCc-ccCCCC-----------
Confidence            478889988764 5555532   467888888764 5665553     23578999998864 343321           


Q ss_pred             cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      ..++|+.|+++++ .++.++..     ..+|+.|+++++ +++.+|..+..+++|+.|++++|
T Consensus       400 l~s~L~~LdLS~N-~LssIP~l-----~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N  455 (788)
T PRK15387        400 LPSELKELMVSGN-RLTSLPML-----PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGN  455 (788)
T ss_pred             cccCCCEEEccCC-cCCCCCcc-----hhhhhhhhhccC-cccccChHHhhccCCCeEECCCC
Confidence            2357999999986 56666542     357888999665 78899999999999999999999

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.14  E-value=3.4e-11  Score=123.86  Aligned_cols=313  Identities=21%  Similarity=0.244  Sum_probs=175.8

Q ss_pred             ccccCCCceeEEEeeecccceeeeccCCCchhhhhhh-ccccccccceEecccCcCcccccccCcCCCCCCCCccEEEec
Q 038945            7 GILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYI-EMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLD   85 (363)
Q Consensus         7 ~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~   85 (363)
                      +-..+|+|.+|-+.....            .+..++. .+..+|.|..||+++|.++.++|..+    +.+-+||+|+++
T Consensus       540 ~~~~~~~L~tLll~~n~~------------~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I----~~Li~LryL~L~  603 (889)
T KOG4658|consen  540 GSSENPKLRTLLLQRNSD------------WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI----GELVHLRYLDLS  603 (889)
T ss_pred             CCCCCCccceEEEeecch------------hhhhcCHHHHhhCcceEEEECCCCCccCcCChHH----hhhhhhhccccc
Confidence            345566777777772110            1122221 13446777888888777777777776    577788888877


Q ss_pred             CCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeeccccc-ccccccC---cccchh
Q 038945           86 DCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP-KLKRFCN---FTGNII  161 (363)
Q Consensus        86 ~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~L~~l~~---~~~~~L  161 (363)
                      ++ .+.+ +|.+ +++++.|.+|++.....+..++..          ...+++|+.|.+..-. .....-.   ..-..|
T Consensus       604 ~t-~I~~-LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i----------~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L  670 (889)
T KOG4658|consen  604 DT-GISH-LPSG-LGNLKKLIYLNLEVTGRLESIPGI----------LLELQSLRVLRLPRSALSNDKLLLKELENLEHL  670 (889)
T ss_pred             CC-Cccc-cchH-HHHHHhhheeccccccccccccch----------hhhcccccEEEeeccccccchhhHHhhhcccch
Confidence            65 4553 5655 777778888877766655444211          1235566665543211 0000000   000011


Q ss_pred             hhhh------------hccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCccccccc-----ccC-CCCC
Q 038945          162 ELLE------------CNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPA-----SCY-LENL  223 (363)
Q Consensus       162 ~~l~------------~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~-----~~~-~~~L  223 (363)
                      ..+.            ...+++.+. ...+............++..+.+|++|.|.+|...+.....     ... |+++
T Consensus       671 ~~ls~~~~s~~~~e~l~~~~~L~~~-~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l  749 (889)
T KOG4658|consen  671 ENLSITISSVLLLEDLLGMTRLRSL-LQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNL  749 (889)
T ss_pred             hhheeecchhHhHhhhhhhHHHHHH-hHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHH
Confidence            1111            000111100 01111011122233556788899999999999876543221     112 6678


Q ss_pred             CEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccc-cc-cccccccccee-cccccccccccCCCCc
Q 038945          224 ATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEE-AE-DCIVFRKLEYL-GLDCLPSLTSFCLGNY  300 (363)
Q Consensus       224 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~-~~-~~~~l~~L~~L-~l~~c~~L~~~~~~~~  300 (363)
                      ..+.+.+|...+...+.   .-.|+|+.|++..|..+++++...+... .. .+..+.++..+ .+.+..++..+...  
T Consensus       750 ~~~~~~~~~~~r~l~~~---~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~--  824 (889)
T KOG4658|consen  750 SKVSILNCHMLRDLTWL---LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWL--  824 (889)
T ss_pred             HHHHhhccccccccchh---hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEec--
Confidence            88888888887776433   3458999999999999887755432211 11 23445566666 45555555555444  


Q ss_pred             ccCCCCccEEeeccCCCcccccCCCc-CCCCc-ceeecccCCCCCCccccCCcchH
Q 038945          301 ALEFPSLEHVVVRQCPTMKIFSQGVV-DAPKL-NKVKPTEEEDGDDEGCWEGNLND  354 (363)
Q Consensus       301 ~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~~L-~~L~i~~~~~~~~~~~~~~~~~~  354 (363)
                      ...+++|+.+.+..||++..+|.... ...+- ..+......+|.+.+.|++++..
T Consensus       825 ~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~  880 (889)
T KOG4658|consen  825 PLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTK  880 (889)
T ss_pred             ccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhh
Confidence            34466799999999999998885433 22222 23333444578888999988543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.10  E-value=3e-12  Score=121.96  Aligned_cols=216  Identities=22%  Similarity=0.254  Sum_probs=131.0

Q ss_pred             hhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCc
Q 038945           37 TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSL  116 (363)
Q Consensus        37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l  116 (363)
                      .+.-+|..+..+..|++|+|++++ +......+ +|  +|.+|+.|++++..+-...+|.+ +..+.||+.++++. +++
T Consensus       161 rLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQ-LP--smtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~-N~L  234 (1255)
T KOG0444|consen  161 RLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQ-LP--SMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSE-NNL  234 (1255)
T ss_pred             hhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhc-Cc--cchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccc-cCC
Confidence            455678888888889999999888 66544444 44  68888888898877766667766 78889999999985 456


Q ss_pred             ceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccC
Q 038945          117 EEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVF  196 (363)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l  196 (363)
                      ..+|..-+          .+++|++|++++.. ++.+...                                    .+.-
T Consensus       235 p~vPecly----------~l~~LrrLNLS~N~-iteL~~~------------------------------------~~~W  267 (1255)
T KOG0444|consen  235 PIVPECLY----------KLRNLRRLNLSGNK-ITELNMT------------------------------------EGEW  267 (1255)
T ss_pred             CcchHHHh----------hhhhhheeccCcCc-eeeeecc------------------------------------HHHH
Confidence            66654322          56788888888642 3332100                                    0011


Q ss_pred             CCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccc
Q 038945          197 ANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCI  276 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  276 (363)
                      .+|++|+++.+. +..+|..+..++.|+.|.+.+. +++.-...+-++++.+|+.+..+++. ++-++.        .+.
T Consensus       268 ~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~-LElVPE--------glc  336 (1255)
T KOG0444|consen  268 ENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNK-LELVPE--------GLC  336 (1255)
T ss_pred             hhhhhhccccch-hccchHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccc-cccCch--------hhh
Confidence            456666666543 5566666666666666666543 22221111225666666666655532 332222        244


Q ss_pred             cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcc
Q 038945          277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMK  319 (363)
Q Consensus       277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~  319 (363)
                      .++.|+.|.++. ..+..+|.+  +.-++.|+.|+++..+++.
T Consensus       337 RC~kL~kL~L~~-NrLiTLPea--IHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  337 RCVKLQKLKLDH-NRLITLPEA--IHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             hhHHHHHhcccc-cceeechhh--hhhcCCcceeeccCCcCcc
Confidence            566666666654 355556655  4456666666666666665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.06  E-value=3.9e-10  Score=114.43  Aligned_cols=117  Identities=15%  Similarity=0.171  Sum_probs=57.7

Q ss_pred             CccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccc
Q 038945          198 NLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIV  277 (363)
Q Consensus       198 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  277 (363)
                      +|+.|++++|. +..+|..+  .++|+.|++++| .++.+|..  +  .++|+.|++++|. +..++..          .
T Consensus       305 sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N-~Lt~LP~~--l--~~sL~~L~Ls~N~-L~~LP~~----------l  365 (754)
T PRK15370        305 GITHLNVQSNS-LTALPETL--PPGLKTLEAGEN-ALTSLPAS--L--PPELQVLDVSKNQ-ITVLPET----------L  365 (754)
T ss_pred             hHHHHHhcCCc-cccCCccc--cccceeccccCC-ccccCChh--h--cCcccEEECCCCC-CCcCChh----------h
Confidence            45555555543 33333221  346666666665 34444421  1  2566666666653 2222110          1


Q ss_pred             ccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCc----CCCCcceeecccC
Q 038945          278 FRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV----DAPKLNKVKPTEE  339 (363)
Q Consensus       278 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~----~~~~L~~L~i~~~  339 (363)
                      .++|+.|++++| .+..++..  .  .++|+.|++++| +++.+|..+.    .++++..+++.+|
T Consensus       366 p~~L~~LdLs~N-~Lt~LP~~--l--~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~N  425 (754)
T PRK15370        366 PPTITTLDVSRN-ALTNLPEN--L--PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYN  425 (754)
T ss_pred             cCCcCEEECCCC-cCCCCCHh--H--HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCC
Confidence            245666666665 44444433  1  125666666554 5555554332    3466667777666

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.01  E-value=6.7e-11  Score=107.52  Aligned_cols=118  Identities=15%  Similarity=0.118  Sum_probs=72.8

Q ss_pred             CcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecc
Q 038945          207 CSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGL  286 (363)
Q Consensus       207 c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l  286 (363)
                      ...+..++..+..+++|..|++++. -+.++|..  .+.+..|+.|+++.+. ...++..        +..+..++.+-.
T Consensus       421 nn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e--~~~lv~Lq~LnlS~Nr-Fr~lP~~--------~y~lq~lEtlla  488 (565)
T KOG0472|consen  421 NNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEE--MGSLVRLQTLNLSFNR-FRMLPEC--------LYELQTLETLLA  488 (565)
T ss_pred             cCccccchHHHHhhhcceeeecccc-hhhhcchh--hhhhhhhheecccccc-cccchHH--------HhhHHHHHHHHh
Confidence            3345555556667777788888763 45566654  4566678888877653 2222111        222333444444


Q ss_pred             cccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          287 DCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       287 ~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      ++ ..+..++... .+.+.+|..|++ +.+.+..+|.++++|++|+.|++.+|
T Consensus       489 s~-nqi~~vd~~~-l~nm~nL~tLDL-~nNdlq~IPp~LgnmtnL~hLeL~gN  538 (565)
T KOG0472|consen  489 SN-NQIGSVDPSG-LKNMRNLTTLDL-QNNDLQQIPPILGNMTNLRHLELDGN  538 (565)
T ss_pred             cc-ccccccChHH-hhhhhhcceecc-CCCchhhCChhhccccceeEEEecCC
Confidence            43 3455454432 566778888888 55578888888888888888888888

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.01  E-value=2.8e-12  Score=116.34  Aligned_cols=126  Identities=17%  Similarity=0.129  Sum_probs=95.8

Q ss_pred             CCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945          196 FANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC  275 (363)
Q Consensus       196 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  275 (363)
                      +..|++++.-.+ .++.+|+.++.+.+|..|+++. +++..+|.   ++++..|+.|++... +++.+++.       ..
T Consensus       182 m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPe---f~gcs~L~Elh~g~N-~i~~lpae-------~~  248 (565)
T KOG0472|consen  182 MKRLKHLDCNSN-LLETLPPELGGLESLELLYLRR-NKIRFLPE---FPGCSLLKELHVGEN-QIEMLPAE-------HL  248 (565)
T ss_pred             HHHHHhcccchh-hhhcCChhhcchhhhHHHHhhh-cccccCCC---CCccHHHHHHHhccc-HHHhhHHH-------Hh
Confidence            566777766443 3778888888888888888877 36767764   467778888876653 45544332       13


Q ss_pred             ccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      ..+++|..|++.+ .+++.+|.+  +.-+.+|++|++++. .+..+|..++++ .|+.|.+.||
T Consensus       249 ~~L~~l~vLDLRd-Nklke~Pde--~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGN  307 (565)
T KOG0472|consen  249 KHLNSLLVLDLRD-NKLKEVPDE--ICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGN  307 (565)
T ss_pred             cccccceeeeccc-cccccCchH--HHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCC
Confidence            4688999999988 488999888  777889999999554 889999999999 8999999998

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.97  E-value=1.8e-09  Score=109.68  Aligned_cols=200  Identities=18%  Similarity=0.215  Sum_probs=121.2

Q ss_pred             cccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccccc
Q 038945           49 RDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNAD  128 (363)
Q Consensus        49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  128 (363)
                      ++|+.|+++++. ++.+|...      +.+|+.|++++| +++. +|.. +  .++|+.|++++|. +..++..      
T Consensus       199 ~~L~~L~Ls~N~-LtsLP~~l------~~nL~~L~Ls~N-~Lts-LP~~-l--~~~L~~L~Ls~N~-L~~LP~~------  259 (754)
T PRK15370        199 EQITTLILDNNE-LKSLPENL------QGNIKTLYANSN-QLTS-IPAT-L--PDTIQEMELSINR-ITELPER------  259 (754)
T ss_pred             cCCcEEEecCCC-CCcCChhh------ccCCCEEECCCC-cccc-CChh-h--hccccEEECcCCc-cCcCChh------
Confidence            457777777765 66654333      357777777776 4554 4433 2  2467777777654 4444310      


Q ss_pred             ccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCc
Q 038945          129 KEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECS  208 (363)
Q Consensus       129 ~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~  208 (363)
                            ..++|+.|++++ .++..++...                                      .++|+.|++++|.
T Consensus       260 ------l~s~L~~L~Ls~-N~L~~LP~~l--------------------------------------~~sL~~L~Ls~N~  294 (754)
T PRK15370        260 ------LPSALQSLDLFH-NKISCLPENL--------------------------------------PEELRYLSVYDNS  294 (754)
T ss_pred             ------HhCCCCEEECcC-CccCcccccc--------------------------------------CCCCcEEECCCCc
Confidence                  123577777763 3444432111                                      1578888888873


Q ss_pred             CcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccc
Q 038945          209 QLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDC  288 (363)
Q Consensus       209 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~  288 (363)
                       ++.+|..+  .++|+.|+++++ .++.+|..    -.++|+.|++.+|. +..++..          ..++|+.|++++
T Consensus       295 -Lt~LP~~l--p~sL~~L~Ls~N-~Lt~LP~~----l~~sL~~L~Ls~N~-Lt~LP~~----------l~~sL~~L~Ls~  355 (754)
T PRK15370        295 -IRTLPAHL--PSGITHLNVQSN-SLTALPET----LPPGLKTLEAGENA-LTSLPAS----------LPPELQVLDVSK  355 (754)
T ss_pred             -cccCcccc--hhhHHHHHhcCC-ccccCCcc----ccccceeccccCCc-cccCChh----------hcCcccEEECCC
Confidence             55555432  356788888775 45555432    23678888888875 3333211          136888999888


Q ss_pred             cccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          289 LPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       289 c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      | .+..++..  .  .++|++|++++| +++.+|..+.  ++|+.|++++|
T Consensus       356 N-~L~~LP~~--l--p~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N  398 (754)
T PRK15370        356 N-QITVLPET--L--PPTITTLDVSRN-ALTNLPENLP--AALQIMQASRN  398 (754)
T ss_pred             C-CCCcCChh--h--cCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccC
Confidence            6 46656543  2  358899999776 6777776543  36888888887

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.96  E-value=3.8e-11  Score=119.12  Aligned_cols=79  Identities=20%  Similarity=0.191  Sum_probs=53.9

Q ss_pred             cccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccccc
Q 038945           49 RDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNAD  128 (363)
Q Consensus        49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  128 (363)
                      .+|+++++++.. +..+|...    +.+++|+.|.+.++ .+. ..|.. +....+|+.|.+..| .++.++...     
T Consensus       241 ~nl~~~dis~n~-l~~lp~wi----~~~~nle~l~~n~N-~l~-~lp~r-i~~~~~L~~l~~~~n-el~yip~~l-----  306 (1081)
T KOG0618|consen  241 LNLQYLDISHNN-LSNLPEWI----GACANLEALNANHN-RLV-ALPLR-ISRITSLVSLSAAYN-ELEYIPPFL-----  306 (1081)
T ss_pred             ccceeeecchhh-hhcchHHH----HhcccceEecccch-hHH-hhHHH-HhhhhhHHHHHhhhh-hhhhCCCcc-----
Confidence            458888888876 77766555    57888888888776 443 35555 666788888888765 366666433     


Q ss_pred             ccccCCCCCccceeeccc
Q 038945          129 KEHLCPLFPKLFSLRLID  146 (363)
Q Consensus       129 ~~~~~~~l~~L~~L~l~~  146 (363)
                           .++.+|+.|++..
T Consensus       307 -----e~~~sL~tLdL~~  319 (1081)
T KOG0618|consen  307 -----EGLKSLRTLDLQS  319 (1081)
T ss_pred             -----cccceeeeeeehh
Confidence                 2466777777764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.92  E-value=1.9e-08  Score=102.04  Aligned_cols=110  Identities=19%  Similarity=0.112  Sum_probs=57.8

Q ss_pred             CccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccc
Q 038945          198 NLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIV  277 (363)
Q Consensus       198 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  277 (363)
                      .|+.|.+++|. +..+|.   ...+|+.|+++++ .++.+|..     .++|+.|+++++. +..++.           .
T Consensus       323 ~L~~L~Ls~N~-L~~LP~---lp~~Lq~LdLS~N-~Ls~LP~l-----p~~L~~L~Ls~N~-L~~LP~-----------l  380 (788)
T PRK15387        323 ELCKLWAYNNQ-LTSLPT---LPSGLQELSVSDN-QLASLPTL-----PSELYKLWAYNNR-LTSLPA-----------L  380 (788)
T ss_pred             cccccccccCc-cccccc---cccccceEecCCC-ccCCCCCC-----Ccccceehhhccc-cccCcc-----------c
Confidence            45555555543 233332   1235666666653 44444421     2455566655532 332211           1


Q ss_pred             ccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          278 FRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       278 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      .++|+.|+++++ .++.++..     .++|+.|+++++ .++.+|..   ..+|+.|++++|
T Consensus       381 ~~~L~~LdLs~N-~Lt~LP~l-----~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~N  432 (788)
T PRK15387        381 PSGLKELIVSGN-RLTSLPVL-----PSELKELMVSGN-RLTSLPML---PSGLLSLSVYRN  432 (788)
T ss_pred             ccccceEEecCC-cccCCCCc-----ccCCCEEEccCC-cCCCCCcc---hhhhhhhhhccC
Confidence            246777777764 45555432     356778888665 56666643   245677777776

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.81  E-value=1.5e-09  Score=100.48  Aligned_cols=16  Identities=13%  Similarity=0.136  Sum_probs=8.7

Q ss_pred             HhhcCCCCEEEEccCC
Q 038945           99 IRCLNNLASLEVRNCD  114 (363)
Q Consensus        99 l~~l~~L~~L~l~~~~  114 (363)
                      +..+++|++|++++|.
T Consensus        77 l~~~~~L~~L~l~~~~   92 (319)
T cd00116          77 LTKGCGLQELDLSDNA   92 (319)
T ss_pred             HHhcCceeEEEccCCC
Confidence            4445566666665544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.73  E-value=7.2e-10  Score=110.24  Aligned_cols=248  Identities=18%  Similarity=0.184  Sum_probs=139.8

Q ss_pred             CCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCc
Q 038945           12 PKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMS   91 (363)
Q Consensus        12 ~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~   91 (363)
                      -||+++.++              -+.+..+|+.+..|.+|+.|++.++. +..++...    ....+|+.|.+.+| .+.
T Consensus       241 ~nl~~~dis--------------~n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri----~~~~~L~~l~~~~n-el~  300 (1081)
T KOG0618|consen  241 LNLQYLDIS--------------HNNLSNLPEWIGACANLEALNANHNR-LVALPLRI----SRITSLVSLSAAYN-ELE  300 (1081)
T ss_pred             ccceeeecc--------------hhhhhcchHHHHhcccceEecccchh-HHhhHHHH----hhhhhHHHHHhhhh-hhh
Confidence            466777777              23456678889999999999999987 88877666    57889999999988 566


Q ss_pred             ccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccc
Q 038945           92 SAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRI  171 (363)
Q Consensus        92 ~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l  171 (363)
                      ..+|.  .+.++.|++|++..+ ++..++....        ...-.+|+.|+.+. .++...+....           ..
T Consensus       301 yip~~--le~~~sL~tLdL~~N-~L~~lp~~~l--------~v~~~~l~~ln~s~-n~l~~lp~~~e-----------~~  357 (1081)
T KOG0618|consen  301 YIPPF--LEGLKSLRTLDLQSN-NLPSLPDNFL--------AVLNASLNTLNVSS-NKLSTLPSYEE-----------NN  357 (1081)
T ss_pred             hCCCc--ccccceeeeeeehhc-cccccchHHH--------hhhhHHHHHHhhhh-ccccccccccc-----------hh
Confidence            54553  677999999999875 4655553110        00111233333331 12222110000           00


Q ss_pred             hhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccC
Q 038945          172 KSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLE  250 (363)
Q Consensus       172 ~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~  250 (363)
                      .+.|+.-...-+++++..++.+.++.+|+.|+++++. +..+|. .+.+++.|++|++++. +++.+|..  +..++.|+
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGN-kL~~Lp~t--va~~~~L~  433 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGN-KLTTLPDT--VANLGRLH  433 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccc-hhhhhhHH--HHhhhhhH
Confidence            1233433444555666666667777777777776654 333332 3445666666666663 55555532  44555555


Q ss_pred             eEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCc
Q 038945          251 RMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTM  318 (363)
Q Consensus       251 ~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l  318 (363)
                      .|....+. +..++         .+..++.|+.++++. .++..+...+ ....|.|++|++++.+.+
T Consensus       434 tL~ahsN~-l~~fP---------e~~~l~qL~~lDlS~-N~L~~~~l~~-~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  434 TLRAHSNQ-LLSFP---------ELAQLPQLKVLDLSC-NNLSEVTLPE-ALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             HHhhcCCc-eeech---------hhhhcCcceEEeccc-chhhhhhhhh-hCCCcccceeeccCCccc
Confidence            55544322 22111         133456666666653 3444433221 222356666666665543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.71  E-value=4.3e-09  Score=97.31  Aligned_cols=275  Identities=17%  Similarity=0.084  Sum_probs=153.6

Q ss_pred             ccCCCceeEEEeeecccceeeeccCCCc-hhhhhhhccccccccceEecccCcCcccccccCc-C--CCCCCCCccEEEe
Q 038945            9 LSTPKLHKVQVTVKEEGELYHREGNLNS-TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQA-L--PVSFFNNLRHLVL   84 (363)
Q Consensus         9 ~~~~~L~~l~~~~~~~~~~~~~~~~l~~-~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-l--~~~~l~~L~~L~l   84 (363)
                      ..+++|+.+.+..          ..+.. ....++..+...+.+++|+++++. +...+.... +  ....+++|++|++
T Consensus        20 ~~l~~L~~l~l~~----------~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l   88 (319)
T cd00116          20 PKLLCLQVLRLEG----------NTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDL   88 (319)
T ss_pred             HHHhhccEEeecC----------CCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEc
Confidence            4456688888882          22222 344556666677889999998875 431111100 0  0135789999999


Q ss_pred             cCCCCCcccCchhHHhhcCC---CCEEEEccCCCcceecccccccccccccCCCC-CccceeecccccccccccCcccch
Q 038945           85 DDCKNMSSAIPANLIRCLNN---LASLEVRNCDSLEEVLHLEELNADKEHLCPLF-PKLFSLRLIDLPKLKRFCNFTGNI  160 (363)
Q Consensus        85 ~~c~~l~~~~p~~~l~~l~~---L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~L~~l~~~~~~~  160 (363)
                      ++|.. ....+.. +..+.+   |++|++++|. +..... ..    .......+ ++|+.|++++|. +..-      .
T Consensus        89 ~~~~~-~~~~~~~-~~~l~~~~~L~~L~ls~~~-~~~~~~-~~----l~~~l~~~~~~L~~L~L~~n~-l~~~------~  153 (319)
T cd00116          89 SDNAL-GPDGCGV-LESLLRSSSLQELKLNNNG-LGDRGL-RL----LAKGLKDLPPALEKLVLGRNR-LEGA------S  153 (319)
T ss_pred             cCCCC-ChhHHHH-HHHHhccCcccEEEeeCCc-cchHHH-HH----HHHHHHhCCCCceEEEcCCCc-CCch------H
Confidence            99854 3223332 555555   9999999875 332100 00    00012244 789999999875 2210      0


Q ss_pred             hhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcc----cccccccCCCCCCEEeeccCcCccc
Q 038945          161 IELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQ----KLVPASCYLENLATLEVSKCHGLIN  236 (363)
Q Consensus       161 L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~----~l~~~~~~~~~L~~L~l~~c~~l~~  236 (363)
                      ..                         .....+..++.|++|++++|..-.    .++..+..+++|++|++++|. +..
T Consensus       154 ~~-------------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~  207 (319)
T cd00116         154 CE-------------------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTD  207 (319)
T ss_pred             HH-------------------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cCh
Confidence            00                         001123344789999999886331    233334456799999999884 332


Q ss_pred             cCc---hhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCC---CCcccCCCCccEE
Q 038945          237 LLT---LSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCL---GNYALEFPSLEHV  310 (363)
Q Consensus       237 ~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~---~~~~~~~~~L~~L  310 (363)
                      ...   ...+..+++|++|++++|.--...+.. -....  ....+.|++|++.+| .+++...   ......+++|+++
T Consensus       208 ~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~-l~~~~--~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l  283 (319)
T cd00116         208 EGASALAETLASLKSLEVLNLGDNNLTDAGAAA-LASAL--LSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLEL  283 (319)
T ss_pred             HHHHHHHHHhcccCCCCEEecCCCcCchHHHHH-HHHHH--hccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEE
Confidence            221   123456788999999998632211000 00000  012478999999987 3431111   1113446789999


Q ss_pred             eeccCCCccc----ccCCCcCC-CCcceeecccC
Q 038945          311 VVRQCPTMKI----FSQGVVDA-PKLNKVKPTEE  339 (363)
Q Consensus       311 ~l~~c~~l~~----l~~~~~~~-~~L~~L~i~~~  339 (363)
                      +++++.--..    +....... +.|+++++.++
T Consensus       284 ~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         284 DLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             ECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence            9977643221    22233344 68899998877

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=4.9e-10  Score=98.35  Aligned_cols=185  Identities=20%  Similarity=0.171  Sum_probs=116.2

Q ss_pred             ccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccc
Q 038945           50 DIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADK  129 (363)
Q Consensus        50 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  129 (363)
                      .|++||+++.. ++......  ....|.+|+.|.+.+. .+.+..-.. +.+-.+|+.|+++.|..+.+...        
T Consensus       186 Rlq~lDLS~s~-it~stl~~--iLs~C~kLk~lSlEg~-~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~--------  252 (419)
T KOG2120|consen  186 RLQHLDLSNSV-ITVSTLHG--ILSQCSKLKNLSLEGL-RLDDPIVNT-IAKNSNLVRLNLSMCSGFTENAL--------  252 (419)
T ss_pred             hhHHhhcchhh-eeHHHHHH--HHHHHHhhhhcccccc-ccCcHHHHH-HhccccceeeccccccccchhHH--------
Confidence            38888888865 55422111  1146888999999887 565533333 77778999999999888765432        


Q ss_pred             cccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcC
Q 038945          130 EHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQ  209 (363)
Q Consensus       130 ~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~  209 (363)
                      .....+|+.|..|++++|.--...                     +.+   ...++-          +.|+.|++++|..
T Consensus       253 ~ll~~scs~L~~LNlsWc~l~~~~---------------------Vtv---~V~his----------e~l~~LNlsG~rr  298 (419)
T KOG2120|consen  253 QLLLSSCSRLDELNLSWCFLFTEK---------------------VTV---AVAHIS----------ETLTQLNLSGYRR  298 (419)
T ss_pred             HHHHHhhhhHhhcCchHhhccchh---------------------hhH---HHhhhc----------hhhhhhhhhhhHh
Confidence            111346888888888887432221                     000   111111          6788888888752


Q ss_pred             -cc--cccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecc
Q 038945          210 -LQ--KLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGL  286 (363)
Q Consensus       210 -l~--~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l  286 (363)
                       +.  .+.--...+++|.+||+++|..++.- -...+..++.|++|.++.|..+..-       ..-.+...|+|.+|++
T Consensus       299 nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~p~-------~~~~l~s~psl~yLdv  370 (419)
T KOG2120|consen  299 NLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDIIPE-------TLLELNSKPSLVYLDV  370 (419)
T ss_pred             hhhhhHHHHHHHhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCChH-------HeeeeccCcceEEEEe
Confidence             11  11112346888899999888877762 2233557888888888888765321       1222456788888888


Q ss_pred             ccc
Q 038945          287 DCL  289 (363)
Q Consensus       287 ~~c  289 (363)
                      .+|
T Consensus       371 ~g~  373 (419)
T KOG2120|consen  371 FGC  373 (419)
T ss_pred             ccc
Confidence            877

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.63  E-value=2.5e-08  Score=103.07  Aligned_cols=90  Identities=21%  Similarity=0.189  Sum_probs=63.2

Q ss_pred             ccccceEecccCcC-cccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccc
Q 038945           48 FRDIENIKLSLFPR-LKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELN  126 (363)
Q Consensus        48 ~~~L~~L~l~~~~~-l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~  126 (363)
                      ++.|.+|-+..+.. +..++...   ...++.|+.|++++|..+.. +|.. ++.+-+||+|++++. .+..+|..    
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~f---f~~m~~LrVLDLs~~~~l~~-LP~~-I~~Li~LryL~L~~t-~I~~LP~~----  613 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEF---FRSLPLLRVLDLSGNSSLSK-LPSS-IGELVHLRYLDLSDT-GISHLPSG----  613 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHH---HhhCcceEEEECCCCCccCc-CChH-HhhhhhhhcccccCC-CccccchH----
Confidence            46788888877653 44433322   13699999999999887775 6766 999999999999975 46655532    


Q ss_pred             ccccccCCCCCccceeecccccccccc
Q 038945          127 ADKEHLCPLFPKLFSLRLIDLPKLKRF  153 (363)
Q Consensus       127 ~~~~~~~~~l~~L~~L~l~~~~~L~~l  153 (363)
                            ...+..|..|++.....+..+
T Consensus       614 ------l~~Lk~L~~Lnl~~~~~l~~~  634 (889)
T KOG4658|consen  614 ------LGNLKKLIYLNLEVTGRLESI  634 (889)
T ss_pred             ------HHHHHhhheeccccccccccc
Confidence                  225667777888776666554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=1.5e-08  Score=93.31  Aligned_cols=214  Identities=17%  Similarity=0.193  Sum_probs=124.9

Q ss_pred             cccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcc-cCchhHHhhcCCCCEEEEccCCCcceecccccc
Q 038945           47 GFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSS-AIPANLIRCLNNLASLEVRNCDSLEEVLHLEEL  125 (363)
Q Consensus        47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~-~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~  125 (363)
                      ++..|+.+-|.+++ +...+... .. ..|++++.|+++.+ -+.. .....++..+|+|+.|.++.+.....+....  
T Consensus       119 n~kkL~~IsLdn~~-V~~~~~~~-~~-k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~--  192 (505)
T KOG3207|consen  119 NLKKLREISLDNYR-VEDAGIEE-YS-KILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT--  192 (505)
T ss_pred             hHHhhhheeecCcc-ccccchhh-hh-hhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccc--
Confidence            46778888888887 66644211 11 36888888888874 2221 1235567788888888888654222111110  


Q ss_pred             cccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEec
Q 038945          126 NADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEIS  205 (363)
Q Consensus       126 ~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~  205 (363)
                             -..+++|+.|.++.|. +.  |                         .++.++       +..+|+|+.|.++
T Consensus       193 -------~~~l~~lK~L~l~~CG-ls--~-------------------------k~V~~~-------~~~fPsl~~L~L~  230 (505)
T KOG3207|consen  193 -------TLLLSHLKQLVLNSCG-LS--W-------------------------KDVQWI-------LLTFPSLEVLYLE  230 (505)
T ss_pred             -------hhhhhhhheEEeccCC-CC--H-------------------------HHHHHH-------HHhCCcHHHhhhh
Confidence                   1156788888888884 11  0                         011111       2334778888888


Q ss_pred             cCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceec
Q 038945          206 ECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLG  285 (363)
Q Consensus       206 ~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~  285 (363)
                      .+..+.........+..|+.|++++.+.+ +++.....+.+|.|+.|+++.|.. .++. ..+.+..+-...+++|++|+
T Consensus       231 ~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi-~si~-~~d~~s~~kt~~f~kL~~L~  307 (505)
T KOG3207|consen  231 ANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGI-ASIA-EPDVESLDKTHTFPKLEYLN  307 (505)
T ss_pred             cccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCc-chhc-CCCccchhhhcccccceeee
Confidence            77533333333445778888888886544 344444567788888888887753 3221 11222233345688888888


Q ss_pred             ccccccccccCCCCcccCCCCccEEee
Q 038945          286 LDCLPSLTSFCLGNYALEFPSLEHVVV  312 (363)
Q Consensus       286 l~~c~~L~~~~~~~~~~~~~~L~~L~l  312 (363)
                      +..+ .+.++..-......++|++|.+
T Consensus       308 i~~N-~I~~w~sl~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  308 ISEN-NIRDWRSLNHLRTLENLKHLRI  333 (505)
T ss_pred             cccC-ccccccccchhhccchhhhhhc
Confidence            8774 4444444332455667777765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.47  E-value=8.2e-09  Score=83.85  Aligned_cols=135  Identities=16%  Similarity=0.175  Sum_probs=93.2

Q ss_pred             ccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcc
Q 038945          190 AESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVG  269 (363)
Q Consensus       190 ~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  269 (363)
                      ++.+..+.+|+.|+++++. ++.+|..+.+++.|++|.+. ..++..+|..  ++.+|.|+.|++....--+....+   
T Consensus        49 ppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvg-mnrl~~lprg--fgs~p~levldltynnl~e~~lpg---  121 (264)
T KOG0617|consen   49 PPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVG-MNRLNILPRG--FGSFPALEVLDLTYNNLNENSLPG---  121 (264)
T ss_pred             CCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecc-hhhhhcCccc--cCCCchhhhhhccccccccccCCc---
Confidence            4456667888888888764 78888888889999999985 4567777755  788899999998875432211110   


Q ss_pred             ccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          270 EEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       270 ~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                          .+..+..|+-|.+.+ ...+.++.+  .+.+++|+-|.+++. .+-++|.+++.++.|++|+|.+|
T Consensus       122 ----nff~m~tlralyl~d-ndfe~lp~d--vg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  122 ----NFFYMTTLRALYLGD-NDFEILPPD--VGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             ----chhHHHHHHHHHhcC-CCcccCChh--hhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhcccc
Confidence                122355666667766 356666666  666777777777555 55567777777777777777776

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=5.8e-08  Score=85.54  Aligned_cols=155  Identities=19%  Similarity=0.190  Sum_probs=98.9

Q ss_pred             CCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccC--------
Q 038945          196 FANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQ--------  267 (363)
Q Consensus       196 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~--------  267 (363)
                      ...|+.|.+.+..--+.+...++.-++|+.|++++|.+++.....-++.++..|..|+++.|...++.....        
T Consensus       209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l  288 (419)
T KOG2120|consen  209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL  288 (419)
T ss_pred             HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence            355666666665544444444555667777777777777666554455667777777777665433321000        


Q ss_pred             ------------ccccccc-cccccccceecccccccccccCCCCcccCCCCccEEeeccCCCccc-ccCCCcCCCCcce
Q 038945          268 ------------VGEEAED-CIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI-FSQGVVDAPKLNK  333 (363)
Q Consensus       268 ------------~~~~~~~-~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~~~~L~~  333 (363)
                                  ...+... ...+|.|..|++++|..++.- ....+..++.|++|.++.|..+.. .-.++...|+|..
T Consensus       289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~y  367 (419)
T KOG2120|consen  289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVY  367 (419)
T ss_pred             hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEE
Confidence                        0001111 235788999999988777752 222367789999999999988762 2245568999999


Q ss_pred             eecccCCCCCCccccCCcchHHHHHhhhcC
Q 038945          334 VKPTEEEDGDDEGCWEGNLNDTKKKLFNEM  363 (363)
Q Consensus       334 L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (363)
                      |++.++            +++|-+.+|+||
T Consensus       368 Ldv~g~------------vsdt~mel~~e~  385 (419)
T KOG2120|consen  368 LDVFGC------------VSDTTMELLKEM  385 (419)
T ss_pred             EEeccc------------cCchHHHHHHHh
Confidence            999999            556666777776

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.40  E-value=9.3e-09  Score=83.54  Aligned_cols=146  Identities=18%  Similarity=0.154  Sum_probs=103.5

Q ss_pred             hhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCc
Q 038945           37 TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSL  116 (363)
Q Consensus        37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l  116 (363)
                      .+..+|..+..+.+|+.|+++++. ++++|.++    +++++|+.|++.-+ ++. ..|.+ ++.+|.|+.|++..+.--
T Consensus        44 Kl~~vppnia~l~nlevln~~nnq-ie~lp~~i----ssl~klr~lnvgmn-rl~-~lprg-fgs~p~levldltynnl~  115 (264)
T KOG0617|consen   44 KLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSI----SSLPKLRILNVGMN-RLN-ILPRG-FGSFPALEVLDLTYNNLN  115 (264)
T ss_pred             ceeecCCcHHHhhhhhhhhcccch-hhhcChhh----hhchhhhheecchh-hhh-cCccc-cCCCchhhhhhccccccc
Confidence            455678888889999999999987 99988887    78999999999754 444 47777 888999999999875432


Q ss_pred             ce-ecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhccccccc
Q 038945          117 EE-VLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKV  195 (363)
Q Consensus       117 ~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~  195 (363)
                      +. ++..          .-.+..|+.|.+++.+ .+                                    ..++.++.
T Consensus       116 e~~lpgn----------ff~m~tlralyl~dnd-fe------------------------------------~lp~dvg~  148 (264)
T KOG0617|consen  116 ENSLPGN----------FFYMTTLRALYLGDND-FE------------------------------------ILPPDVGK  148 (264)
T ss_pred             cccCCcc----------hhHHHHHHHHHhcCCC-cc------------------------------------cCChhhhh
Confidence            22 1110          0023455666666432 11                                    11445677


Q ss_pred             CCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCc
Q 038945          196 FANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLT  239 (363)
Q Consensus       196 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~  239 (363)
                      +.+|+-|.+.++. +-.+|..++.+.+|++|.+.+. +++.+|+
T Consensus       149 lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgn-rl~vlpp  190 (264)
T KOG0617|consen  149 LTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGN-RLTVLPP  190 (264)
T ss_pred             hcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccc-eeeecCh
Confidence            7888888888876 4467777788889999999884 6777663

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.29  E-value=1.6e-07  Score=85.79  Aligned_cols=100  Identities=15%  Similarity=0.147  Sum_probs=70.9

Q ss_pred             hhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCccc
Q 038945          241 STSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI  320 (363)
Q Consensus       241 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~  320 (363)
                      .-++.+++|+.|+++++. ++.+-.+       ++....+++.|.+.. .+++.+..+- +..+..|+.|++.+. +++.
T Consensus       268 ~cf~~L~~L~~lnlsnN~-i~~i~~~-------aFe~~a~l~eL~L~~-N~l~~v~~~~-f~~ls~L~tL~L~~N-~it~  336 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNNK-ITRIEDG-------AFEGAAELQELYLTR-NKLEFVSSGM-FQGLSGLKTLSLYDN-QITT  336 (498)
T ss_pred             HHHhhcccceEeccCCCc-cchhhhh-------hhcchhhhhhhhcCc-chHHHHHHHh-hhccccceeeeecCC-eeEE
Confidence            346789999999998854 4544221       234577899999987 4677665543 667888999999666 6665


Q ss_pred             ccC-CCcCCCCcceeecccC-CCCCCccccCCc
Q 038945          321 FSQ-GVVDAPKLNKVKPTEE-EDGDDEGCWEGN  351 (363)
Q Consensus       321 l~~-~~~~~~~L~~L~i~~~-~~~~~~~~~~~~  351 (363)
                      +.. ...++.+|.+|.+-.| -.+++.+.|-.+
T Consensus       337 ~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~  369 (498)
T KOG4237|consen  337 VAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE  369 (498)
T ss_pred             EecccccccceeeeeehccCcccCccchHHHHH
Confidence            544 4558899999999988 556666666543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.26  E-value=2.1e-07  Score=91.00  Aligned_cols=114  Identities=21%  Similarity=0.180  Sum_probs=67.0

Q ss_pred             cccccccceEecccC-cCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccc
Q 038945           45 MIGFRDIENIKLSLF-PRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLE  123 (363)
Q Consensus        45 ~~~~~~L~~L~l~~~-~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~  123 (363)
                      ...++.|+.|+++++ ......+.........+++|+.|++.+|..+++..-..+...+++|++|.+.+|..+.+..   
T Consensus       210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~g---  286 (482)
T KOG1947|consen  210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEG---  286 (482)
T ss_pred             HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhH---
Confidence            345678888888763 3222222111011135678888888888767766666655568888888877777643221   


Q ss_pred             cccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccch
Q 038945          124 ELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIK  172 (363)
Q Consensus       124 ~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~  172 (363)
                           ....+..+++|+.|+++.|..+.+-      ++..+...||++.
T Consensus       287 -----l~~i~~~~~~L~~L~l~~c~~~~d~------~l~~~~~~c~~l~  324 (482)
T KOG1947|consen  287 -----LVSIAERCPSLRELDLSGCHGLTDS------GLEALLKNCPNLR  324 (482)
T ss_pred             -----HHHHHHhcCcccEEeeecCccchHH------HHHHHHHhCcchh
Confidence                 1112346778888888888766331      4444444466554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=4.6e-07  Score=83.74  Aligned_cols=115  Identities=17%  Similarity=0.182  Sum_probs=62.5

Q ss_pred             ccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCC
Q 038945            9 LSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCK   88 (363)
Q Consensus         9 ~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~   88 (363)
                      ..||+.++|+++           +++=.+...+-.-...+|+|+.|+++.+. +...+.+. .. ..+++|+.|.++.| 
T Consensus       143 k~~~~v~~LdLS-----------~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~-~~-~~l~~lK~L~l~~C-  207 (505)
T KOG3207|consen  143 KILPNVRDLDLS-----------RNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSN-TT-LLLSHLKQLVLNSC-  207 (505)
T ss_pred             hhCCcceeecch-----------hhhHHhHHHHHHHHHhcccchhccccccc-ccCCcccc-ch-hhhhhhheEEeccC-
Confidence            356777777777           22222222222223456788888887765 55433333 11 35777888888888 


Q ss_pred             CCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeeccccc
Q 038945           89 NMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP  148 (363)
Q Consensus        89 ~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  148 (363)
                      +++-.....+...+|+|+.|++.++..+-. ...         .-.-+..|+.|+|++.+
T Consensus       208 Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~-~~~---------~~~i~~~L~~LdLs~N~  257 (505)
T KOG3207|consen  208 GLSWKDVQWILLTFPSLEVLYLEANEIILI-KAT---------STKILQTLQELDLSNNN  257 (505)
T ss_pred             CCCHHHHHHHHHhCCcHHHhhhhcccccce-ecc---------hhhhhhHHhhccccCCc
Confidence            343222233355678888888877642211 000         01235567777777654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.17  E-value=6e-07  Score=87.73  Aligned_cols=72  Identities=22%  Similarity=0.191  Sum_probs=39.5

Q ss_pred             CCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccC-CCcceecccccccccccccCCCCCccceeeccccccccc
Q 038945           75 FFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNC-DSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKR  152 (363)
Q Consensus        75 ~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~  152 (363)
                      .+++|+.|.+..|..+....-..+...+++|+.|++.+| ......+...      ......+++|+.+++..|..+.+
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------~~~~~~~~~L~~l~l~~~~~isd  258 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL------LLLLSICRKLKSLDLSGCGLVTD  258 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh------hhhhhhcCCcCccchhhhhccCc
Confidence            467777777777776665333334666777777777763 2222111100      00133556677777776655444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.97  E-value=2.9e-05  Score=73.03  Aligned_cols=136  Identities=16%  Similarity=0.256  Sum_probs=83.1

Q ss_pred             HhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHH
Q 038945           99 IRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTR  178 (363)
Q Consensus        99 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~  178 (363)
                      +..+++++.|++++| .+..+             ..-.++|+.|.+++|.+++.++...                     
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sL-------------P~LP~sLtsL~Lsnc~nLtsLP~~L---------------------   92 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESL-------------PVLPNELTEITIENCNNLTTLPGSI---------------------   92 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCccc-------------CCCCCCCcEEEccCCCCcccCCchh---------------------
Confidence            445788999999988 44432             2223368999999888886653211                     


Q ss_pred             HHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeecc--CcCccccCchhhhhhccccCeEeecc
Q 038945          179 LFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSK--CHGLINLLTLSTSESLVNLERMKMSD  256 (363)
Q Consensus       179 ~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~--c~~l~~~~~~~~~~~l~~L~~L~l~~  256 (363)
                                       .++|++|++++|..+..+|      ++|+.|++..  |..+..+|        ++|+.|.+.+
T Consensus        93 -----------------P~nLe~L~Ls~Cs~L~sLP------~sLe~L~L~~n~~~~L~~LP--------ssLk~L~I~~  141 (426)
T PRK15386         93 -----------------PEGLEKLTVCHCPEISGLP------ESVRSLEIKGSATDSIKNVP--------NGLTSLSINS  141 (426)
T ss_pred             -----------------hhhhhheEccCcccccccc------cccceEEeCCCCCcccccCc--------chHhheeccc
Confidence                             1688999999987776664      3577777753  22233332        4677777754


Q ss_pred             CcchhhhhccCccccccccccc-cccceecccccccccccCCCCcccCCC-CccEEeeccC
Q 038945          257 CKMMEEIIQSQVGEEAEDCIVF-RKLEYLGLDCLPSLTSFCLGNYALEFP-SLEHVVVRQC  315 (363)
Q Consensus       257 c~~l~~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~L~~~~~~~~~~~~~-~L~~L~l~~c  315 (363)
                      +......       ..  ...+ ++|++|.+.+|..+. ++..     +| +|+.|.++.+
T Consensus       142 ~n~~~~~-------~l--p~~LPsSLk~L~Is~c~~i~-LP~~-----LP~SLk~L~ls~n  187 (426)
T PRK15386        142 YNPENQA-------RI--DNLISPSLKTLSLTGCSNII-LPEK-----LPESLQSITLHIE  187 (426)
T ss_pred             ccccccc-------cc--ccccCCcccEEEecCCCccc-Cccc-----ccccCcEEEeccc
Confidence            3211100       00  0123 479999999887553 3322     44 7999988664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.92  E-value=1e-06  Score=80.60  Aligned_cols=85  Identities=19%  Similarity=0.140  Sum_probs=41.6

Q ss_pred             ccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccC
Q 038945          217 SCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFC  296 (363)
Q Consensus       217 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~  296 (363)
                      +..+++|++|++++. .++.+-. +++.....++.|++.++. ++.+-.       ..+.++..|+.|++.+. .++.+.
T Consensus       270 f~~L~~L~~lnlsnN-~i~~i~~-~aFe~~a~l~eL~L~~N~-l~~v~~-------~~f~~ls~L~tL~L~~N-~it~~~  338 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNN-KITRIED-GAFEGAAELQELYLTRNK-LEFVSS-------GMFQGLSGLKTLSLYDN-QITTVA  338 (498)
T ss_pred             HhhcccceEeccCCC-ccchhhh-hhhcchhhhhhhhcCcch-HHHHHH-------HhhhccccceeeeecCC-eeEEEe
Confidence            445666666666553 4444432 334555666666665542 332211       11234556666666653 444444


Q ss_pred             CCCcccCCCCccEEeec
Q 038945          297 LGNYALEFPSLEHVVVR  313 (363)
Q Consensus       297 ~~~~~~~~~~L~~L~l~  313 (363)
                      .+. +....+|.+|.+-
T Consensus       339 ~~a-F~~~~~l~~l~l~  354 (498)
T KOG4237|consen  339 PGA-FQTLFSLSTLNLL  354 (498)
T ss_pred             ccc-ccccceeeeeehc
Confidence            442 3444455555544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.88  E-value=2e-05  Score=53.79  Aligned_cols=60  Identities=33%  Similarity=0.438  Sum_probs=41.3

Q ss_pred             cccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCC
Q 038945           49 RDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCD  114 (363)
Q Consensus        49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~  114 (363)
                      |+|++|+++++. ++.++... +  ..+++|++|+++++ +++. .+...+..+++|++|++++|.
T Consensus         1 p~L~~L~l~~n~-l~~i~~~~-f--~~l~~L~~L~l~~N-~l~~-i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNK-LTEIPPDS-F--SNLPNLETLDLSNN-NLTS-IPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSST-ESEECTTT-T--TTGTTESEEEETSS-SESE-EETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCC-CCccCHHH-H--cCCCCCCEeEccCC-ccCc-cCHHHHcCCCCCCEEeCcCCc
Confidence            467788888874 77766544 2  46788888888866 5554 444447788888888887763

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.80  E-value=4.3e-05  Score=63.95  Aligned_cols=85  Identities=26%  Similarity=0.286  Sum_probs=38.2

Q ss_pred             cccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccc
Q 038945           47 GFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELN  126 (363)
Q Consensus        47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~  126 (363)
                      .+.+|+.|+++++. ++.+.. .    ..+++|+.|+++++ .++.. ...+...+|+|++|++.++ ++.++..+..  
T Consensus        40 ~l~~L~~L~Ls~N~-I~~l~~-l----~~L~~L~~L~L~~N-~I~~i-~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~--  108 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQ-ITKLEG-L----PGLPRLKTLDLSNN-RISSI-SEGLDKNLPNLQELYLSNN-KISDLNELEP--  108 (175)
T ss_dssp             T-TT--EEE-TTS---S--TT---------TT--EEE--SS----S--CHHHHHH-TT--EEE-TTS----SCCCCGG--
T ss_pred             hhcCCCEEECCCCC-CccccC-c----cChhhhhhcccCCC-CCCcc-ccchHHhCCcCCEEECcCC-cCCChHHhHH--
Confidence            36889999999997 887642 3    37999999999987 56653 3333457999999999874 5666554332  


Q ss_pred             ccccccCCCCCccceeeccccc
Q 038945          127 ADKEHLCPLFPKLFSLRLIDLP  148 (363)
Q Consensus       127 ~~~~~~~~~l~~L~~L~l~~~~  148 (363)
                            ...+++|+.|++.+.|
T Consensus       109 ------L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen  109 ------LSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             ------GGG-TT--EEE-TT-G
T ss_pred             ------HHcCCCcceeeccCCc
Confidence                  2368899999998876

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.80  E-value=3e-05  Score=72.89  Aligned_cols=133  Identities=14%  Similarity=0.226  Sum_probs=76.7

Q ss_pred             cccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccc--
Q 038945          193 NKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGE--  270 (363)
Q Consensus       193 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~--  270 (363)
                      +..+.+++.|++++| .++.+|.   ..++|++|.+++|..++.+|..  +  .++|++|++.+|..+..++..-..-  
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~--L--P~nLe~L~Ls~Cs~L~sLP~sLe~L~L  119 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGS--I--PEGLEKLTVCHCPEISGLPESVRSLEI  119 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCch--h--hhhhhheEccCcccccccccccceEEe
Confidence            334478889999988 6777762   3457999999999888777632  2  3688999999987665443210000  


Q ss_pred             ---ccccccccc-ccceecccccccccccCCCCcccCCC-CccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          271 ---EAEDCIVFR-KLEYLGLDCLPSLTSFCLGNYALEFP-SLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       271 ---~~~~~~~l~-~L~~L~l~~c~~L~~~~~~~~~~~~~-~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                         ....+..+| +|+.|.+.++........   ...+| +|++|.+.+|..+. +|..+-  .+|+.|+++.+
T Consensus       120 ~~n~~~~L~~LPssLk~L~I~~~n~~~~~~l---p~~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        120 KGSATDSIKNVPNGLTSLSINSYNPENQARI---DNLISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CCCCCcccccCcchHhheecccccccccccc---ccccCCcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence               000112222 455554432211100000   11243 79999999987654 443322  57888887654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.74  E-value=2.4e-05  Score=65.45  Aligned_cols=129  Identities=15%  Similarity=0.169  Sum_probs=41.9

Q ss_pred             cCCCccEEEeccCcCccccccccc-CCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccc
Q 038945          195 VFANLKSLEISECSQLQKLVPASC-YLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAE  273 (363)
Q Consensus       195 ~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  273 (363)
                      +...+++|++.++. ++.+ ..+. .+.+|+.|+++++ .++.+..   +..+++|+.|+++++. ++++..        
T Consensus        17 n~~~~~~L~L~~n~-I~~I-e~L~~~l~~L~~L~Ls~N-~I~~l~~---l~~L~~L~~L~L~~N~-I~~i~~--------   81 (175)
T PF14580_consen   17 NPVKLRELNLRGNQ-ISTI-ENLGATLDKLEVLDLSNN-QITKLEG---LPGLPRLKTLDLSNNR-ISSISE--------   81 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS---S--TT-------TT--EEE--SS----S-CH--------
T ss_pred             cccccccccccccc-cccc-cchhhhhcCCCEEECCCC-CCccccC---ccChhhhhhcccCCCC-CCcccc--------
Confidence            33567777777764 3333 2222 4677888888775 4555432   4567788888887753 333210        


Q ss_pred             cc-ccccccceecccccccccccCCCCcccCCCCccEEeeccCCCccc---ccCCCcCCCCcceeecccC
Q 038945          274 DC-IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI---FSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       274 ~~-~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~---l~~~~~~~~~L~~L~i~~~  339 (363)
                      .+ ..+|+|+.|++.++ .+.++..-.....+|+|+.|++.++|--..   -..-+..+|+|+.||-..-
T Consensus        82 ~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   82 GLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             chHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            01 24778888888763 555554433355678888888877754321   1122337788888875543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.71  E-value=5.6e-05  Score=51.60  Aligned_cols=58  Identities=19%  Similarity=0.242  Sum_probs=40.4

Q ss_pred             cccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCC-cCCCCcceeecccC
Q 038945          279 RKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE  339 (363)
Q Consensus       279 ~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~i~~~  339 (363)
                      |+|++|++++| .++.++.+. +..+++|++|+++ +++++.++.+. ..+++|+.|++++|
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~-f~~l~~L~~L~l~-~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDS-FSNLPNLETLDLS-NNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSS-TESEECTTT-TTTGTTESEEEET-SSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCC-CCCccCHHH-HcCCCCCCEeEcc-CCccCccCHHHHcCCCCCCEEeCcCC
Confidence            46777777776 677776653 5667788888886 44666666544 47888888888776

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.47  E-value=7.5e-05  Score=66.36  Aligned_cols=105  Identities=20%  Similarity=0.191  Sum_probs=51.0

Q ss_pred             CCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945          196 FANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC  275 (363)
Q Consensus       196 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  275 (363)
                      +|.++.|+++++.. ..+ ..+..+++|++|++++. .+..+  .+|...+-+++.|.++.+. +++         +..+
T Consensus       306 ~Pkir~L~lS~N~i-~~v-~nLa~L~~L~~LDLS~N-~Ls~~--~Gwh~KLGNIKtL~La~N~-iE~---------LSGL  370 (490)
T KOG1259|consen  306 APKLRRLILSQNRI-RTV-QNLAELPQLQLLDLSGN-LLAEC--VGWHLKLGNIKTLKLAQNK-IET---------LSGL  370 (490)
T ss_pred             ccceeEEeccccce-eee-hhhhhcccceEeecccc-hhHhh--hhhHhhhcCEeeeehhhhh-Hhh---------hhhh
Confidence            36666666665542 222 22455666666666653 23322  1334555666666665532 221         1113


Q ss_pred             ccccccceecccccccccccCCCCcccCCCCccEEeeccCC
Q 038945          276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP  316 (363)
Q Consensus       276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~  316 (363)
                      +.+=+|.+|++.++ +++.+.....++.+|.|+.+.+.+.|
T Consensus       371 ~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  371 RKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             Hhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence            33445666666552 33333332224556666666655554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.32  E-value=0.00028  Score=62.82  Aligned_cols=142  Identities=13%  Similarity=0.133  Sum_probs=99.5

Q ss_pred             CCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945          196 FANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC  275 (363)
Q Consensus       196 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  275 (363)
                      -..|+.++++++. ++.+-.++.-.|.++.|+++.. ++..+..   ...+++|..|+++++. +..+...        -
T Consensus       283 Wq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N-~i~~v~n---La~L~~L~~LDLS~N~-Ls~~~Gw--------h  348 (490)
T KOG1259|consen  283 WQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQN-RIRTVQN---LAELPQLQLLDLSGNL-LAECVGW--------H  348 (490)
T ss_pred             Hhhhhhccccccc-hhhhhhhhhhccceeEEecccc-ceeeehh---hhhcccceEeecccch-hHhhhhh--------H
Confidence            3688999999864 5556566677899999999875 4544432   5678999999999864 3322110        1


Q ss_pred             ccccccceecccccccccccCCCCcccCCCCccEEeeccCCCccccc--CCCcCCCCcceeecccCCCCCCccccCCcch
Q 038945          276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFS--QGVVDAPKLNKVKPTEEEDGDDEGCWEGNLN  353 (363)
Q Consensus       276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~  353 (363)
                      ..+-+++.|.+.++ .+++++.   ...+-+|..|++++. +++.+-  .+++++|.|+.+.+.+|     ++.-..+-.
T Consensus       349 ~KLGNIKtL~La~N-~iE~LSG---L~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~N-----Pl~~~vdYR  418 (490)
T KOG1259|consen  349 LKLGNIKTLKLAQN-KIETLSG---LRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGN-----PLAGSVDYR  418 (490)
T ss_pred             hhhcCEeeeehhhh-hHhhhhh---hHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCC-----CccccchHH
Confidence            23668999999883 6676654   455778999999766 555433  68889999999999999     777666655


Q ss_pred             HHHHHhhh
Q 038945          354 DTKKKLFN  361 (363)
Q Consensus       354 ~~~~~~~~  361 (363)
                      +-.-..|-
T Consensus       419 TKVLa~FG  426 (490)
T KOG1259|consen  419 TKVLARFG  426 (490)
T ss_pred             HHHHHHHh
Confidence            54444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.28  E-value=0.00011  Score=74.59  Aligned_cols=62  Identities=18%  Similarity=0.316  Sum_probs=29.5

Q ss_pred             cccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccC
Q 038945           49 RDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNC  113 (363)
Q Consensus        49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~  113 (363)
                      .+|++|++++-..+..-|... .. ..||+|++|.+.+-.-..+ --..+...+|||..|||+++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~k-ig-~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~T  183 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKK-IG-TMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGT  183 (699)
T ss_pred             HhhhhcCccccchhhccHHHH-Hh-hhCcccceEEecCceecch-hHHHHhhccCccceeecCCC
Confidence            446666666544443334222 11 2566666666655422111 11223455666666666654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.17  E-value=3.6e-05  Score=73.77  Aligned_cols=184  Identities=18%  Similarity=0.172  Sum_probs=98.2

Q ss_pred             hhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCc
Q 038945           37 TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSL  116 (363)
Q Consensus        37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l  116 (363)
                      .+..+|.+.-.|-.|+.+.++.+. +..++..+    +.+..|.+|+++.+ ++.. +|.. +..++ |+.|.+++ .++
T Consensus        86 R~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i----~~L~~lt~l~ls~N-qlS~-lp~~-lC~lp-Lkvli~sN-Nkl  155 (722)
T KOG0532|consen   86 RFSELPEEACAFVSLESLILYHNC-IRTIPEAI----CNLEALTFLDLSSN-QLSH-LPDG-LCDLP-LKVLIVSN-NKL  155 (722)
T ss_pred             ccccCchHHHHHHHHHHHHHHhcc-ceecchhh----hhhhHHHHhhhccc-hhhc-CChh-hhcCc-ceeEEEec-Ccc
Confidence            456677777777788888887766 66666665    57778888888766 4443 4444 55565 78887775 356


Q ss_pred             ceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccC
Q 038945          117 EEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVF  196 (363)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l  196 (363)
                      ..++...+          ..+.|..|+++.|. +..+..+..           .+. +++.....-+++ ..-++.+.. 
T Consensus       156 ~~lp~~ig----------~~~tl~~ld~s~ne-i~slpsql~-----------~l~-slr~l~vrRn~l-~~lp~El~~-  210 (722)
T KOG0532|consen  156 TSLPEEIG----------LLPTLAHLDVSKNE-IQSLPSQLG-----------YLT-SLRDLNVRRNHL-EDLPEELCS-  210 (722)
T ss_pred             ccCCcccc----------cchhHHHhhhhhhh-hhhchHHhh-----------hHH-HHHHHHHhhhhh-hhCCHHHhC-
Confidence            55554322          34566667666543 222211111           000 111000011111 111223332 


Q ss_pred             CCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchh-hhhhccccCeEeeccC
Q 038945          197 ANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLS-TSESLVNLERMKMSDC  257 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~l~~L~~L~l~~c  257 (363)
                      -.|.+|++++ .++..+|..+..+.+|+.|-+.+.| ++.-|..- .-+.+.=-++|++.-|
T Consensus       211 LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  211 LPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             Cceeeeeccc-CceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence            2466666663 4566777777777777777776543 44422111 1133445566666655

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.03  E-value=0.00062  Score=65.01  Aligned_cols=83  Identities=24%  Similarity=0.342  Sum_probs=47.8

Q ss_pred             ccccccceEecccCcCcccccccCcCCCCCCC-CccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccc
Q 038945           46 IGFRDIENIKLSLFPRLKEIWHNQALPVSFFN-NLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEE  124 (363)
Q Consensus        46 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~-~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~  124 (363)
                      ..++.++.|++.+.. +.+++...    ..+. +|+.|++++. .+... |.. ++.+++|+.|+++.+. +.+++... 
T Consensus       113 ~~~~~l~~L~l~~n~-i~~i~~~~----~~~~~nL~~L~l~~N-~i~~l-~~~-~~~l~~L~~L~l~~N~-l~~l~~~~-  182 (394)
T COG4886         113 LELTNLTSLDLDNNN-ITDIPPLI----GLLKSNLKELDLSDN-KIESL-PSP-LRNLPNLKNLDLSFND-LSDLPKLL-  182 (394)
T ss_pred             hcccceeEEecCCcc-cccCcccc----ccchhhccccccccc-chhhh-hhh-hhccccccccccCCch-hhhhhhhh-
Confidence            344567777777765 66655444    3442 7777777765 34432 111 6677777777777654 44444221 


Q ss_pred             ccccccccCCCCCccceeecccc
Q 038945          125 LNADKEHLCPLFPKLFSLRLIDL  147 (363)
Q Consensus       125 ~~~~~~~~~~~l~~L~~L~l~~~  147 (363)
                               ...+.|+.|++++.
T Consensus       183 ---------~~~~~L~~L~ls~N  196 (394)
T COG4886         183 ---------SNLSNLNNLDLSGN  196 (394)
T ss_pred             ---------hhhhhhhheeccCC
Confidence                     03556666666653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.99  E-value=0.00067  Score=64.80  Aligned_cols=94  Identities=19%  Similarity=0.220  Sum_probs=64.7

Q ss_pred             chhhhhhhcccccc-ccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCC
Q 038945           36 STIQKCYIEMIGFR-DIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCD  114 (363)
Q Consensus        36 ~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~  114 (363)
                      ..+.+++....... +|+.|+++++. ++.++...    ..+++|+.|++.++ ++.. .|.. .+..++|+.|+++++ 
T Consensus       126 n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~----~~l~~L~~L~l~~N-~l~~-l~~~-~~~~~~L~~L~ls~N-  196 (394)
T COG4886         126 NNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPL----RNLPNLKNLDLSFN-DLSD-LPKL-LSNLSNLNNLDLSGN-  196 (394)
T ss_pred             cccccCccccccchhhcccccccccc-hhhhhhhh----hccccccccccCCc-hhhh-hhhh-hhhhhhhhheeccCC-
Confidence            45566666666664 89999999987 88765344    57999999999998 4555 3432 337889999999985 


Q ss_pred             CcceecccccccccccccCCCCCccceeeccccc
Q 038945          115 SLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP  148 (363)
Q Consensus       115 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  148 (363)
                      ++..++...+          ...+|+++.+.+-+
T Consensus       197 ~i~~l~~~~~----------~~~~L~~l~~~~N~  220 (394)
T COG4886         197 KISDLPPEIE----------LLSALEELDLSNNS  220 (394)
T ss_pred             ccccCchhhh----------hhhhhhhhhhcCCc
Confidence            4766664211          23447777776654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=96.87  E-value=0.00018  Score=69.18  Aligned_cols=131  Identities=18%  Similarity=0.168  Sum_probs=84.9

Q ss_pred             ccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcc
Q 038945          190 AESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVG  269 (363)
Q Consensus       190 ~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  269 (363)
                      +.++..+..|+.++++.+. +..+|..+..+ -|+.|-+++ ++++.+|..  ++.++.|..|+++.|. +..++..   
T Consensus       114 p~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~l-pLkvli~sN-Nkl~~lp~~--ig~~~tl~~ld~s~ne-i~slpsq---  184 (722)
T KOG0532|consen  114 PEAICNLEALTFLDLSSNQ-LSHLPDGLCDL-PLKVLIVSN-NKLTSLPEE--IGLLPTLAHLDVSKNE-IQSLPSQ---  184 (722)
T ss_pred             chhhhhhhHHHHhhhccch-hhcCChhhhcC-cceeEEEec-CccccCCcc--cccchhHHHhhhhhhh-hhhchHH---
Confidence            4455666777777777654 44444444333 467776665 467777654  5566777777777654 3433333   


Q ss_pred             ccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          270 EEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       270 ~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                           +..+.+|+.|.+.. ..+.+++.+  .. .-.|.+|++ .|+++..+|..+.+|..|++|.+..|
T Consensus       185 -----l~~l~slr~l~vrR-n~l~~lp~E--l~-~LpLi~lDf-ScNkis~iPv~fr~m~~Lq~l~LenN  244 (722)
T KOG0532|consen  185 -----LGYLTSLRDLNVRR-NHLEDLPEE--LC-SLPLIRLDF-SCNKISYLPVDFRKMRHLQVLQLENN  244 (722)
T ss_pred             -----hhhHHHHHHHHHhh-hhhhhCCHH--Hh-CCceeeeec-ccCceeecchhhhhhhhheeeeeccC
Confidence                 45567777777776 356667665  33 334778887 77788888888888888888888777

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.69  E-value=0.00014  Score=65.77  Aligned_cols=61  Identities=16%  Similarity=0.192  Sum_probs=30.0

Q ss_pred             CCccEEEeccCcCc----ccccccccCCCCCCEEeeccCcCccccCc---hhhhhhccccCeEeeccCc
Q 038945          197 ANLKSLEISECSQL----QKLVPASCYLENLATLEVSKCHGLINLLT---LSTSESLVNLERMKMSDCK  258 (363)
Q Consensus       197 ~~L~~L~l~~c~~l----~~l~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~  258 (363)
                      +.|+.++++.+..-    +-+...+..+++|+.|++++.- .+.-..   ......+++|+.|++.+|.
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccc
Confidence            56667776654321    1222334566777777776532 111111   1123344566666666664

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.67  E-value=0.0026  Score=40.15  Aligned_cols=33  Identities=30%  Similarity=0.468  Sum_probs=14.6

Q ss_pred             CccEEEecCCCCCcccCchhHHhhcCCCCEEEEccC
Q 038945           78 NLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNC  113 (363)
Q Consensus        78 ~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~  113 (363)
                      +|++|+++++ ++++..+ . ++++++|+.|+++++
T Consensus         2 ~L~~L~l~~N-~i~~l~~-~-l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPP-E-LSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSS-S-SSHGG-H-GTTCTTSSEEEETSS
T ss_pred             cceEEEccCC-CCcccCc-h-HhCCCCCCEEEecCC
Confidence            4555555554 3443222 2 445555555555554

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.64  E-value=0.0015  Score=66.52  Aligned_cols=59  Identities=17%  Similarity=0.233  Sum_probs=29.1

Q ss_pred             cccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEcc
Q 038945           47 GFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRN  112 (363)
Q Consensus        47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~  112 (363)
                      +||+|.+||++++. ++.+ .|+    +.+.+|+.|.+++..-.....-.+ +-++++|+.||++.
T Consensus       171 sFpNL~sLDIS~Tn-I~nl-~GI----S~LknLq~L~mrnLe~e~~~~l~~-LF~L~~L~vLDIS~  229 (699)
T KOG3665|consen  171 SFPNLRSLDISGTN-ISNL-SGI----SRLKNLQVLSMRNLEFESYQDLID-LFNLKKLRVLDISR  229 (699)
T ss_pred             ccCccceeecCCCC-ccCc-HHH----hccccHHHHhccCCCCCchhhHHH-HhcccCCCeeeccc
Confidence            45666666666654 5553 222    356666666665543221111112 44466666666654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.63  E-value=0.0042  Score=39.15  Aligned_cols=39  Identities=23%  Similarity=0.303  Sum_probs=29.9

Q ss_pred             cccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCccc
Q 038945           49 RDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSA   93 (363)
Q Consensus        49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~   93 (363)
                      ++|++|+++++. +++++...    ..|++|+.|++++| .+++.
T Consensus         1 ~~L~~L~l~~N~-i~~l~~~l----~~l~~L~~L~l~~N-~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQ-ITDLPPEL----SNLPNLETLNLSNN-PISDI   39 (44)
T ss_dssp             TT-SEEEETSSS--SSHGGHG----TTCTTSSEEEETSS-CCSBE
T ss_pred             CcceEEEccCCC-CcccCchH----hCCCCCCEEEecCC-CCCCC
Confidence            478999999997 88877645    68999999999998 46653

...

>PLN03150 hypothetical protein; Provisional

Probab=96.62  E-value=0.0032  Score=63.76  Aligned_cols=97  Identities=18%  Similarity=0.123  Sum_probs=69.7

Q ss_pred             hhhhccccccccceEecccCcCcc-cccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcce
Q 038945           40 KCYIEMIGFRDIENIKLSLFPRLK-EIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEE  118 (363)
Q Consensus        40 ~l~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~  118 (363)
                      .+|..+..+++|+.|+|+++. +. .+|...    +.+++|+.|++++| ++....|.. ++++++|+.|+++++.--..
T Consensus       433 ~ip~~i~~L~~L~~L~Ls~N~-l~g~iP~~~----~~l~~L~~LdLs~N-~lsg~iP~~-l~~L~~L~~L~Ls~N~l~g~  505 (623)
T PLN03150        433 FIPNDISKLRHLQSINLSGNS-IRGNIPPSL----GSITSLEVLDLSYN-SFNGSIPES-LGQLTSLRILNLNGNSLSGR  505 (623)
T ss_pred             cCCHHHhCCCCCCEEECCCCc-ccCcCChHH----hCCCCCCEEECCCC-CCCCCCchH-HhcCCCCCEEECcCCccccc
Confidence            356778889999999999987 54 445444    68999999999998 677667766 88999999999998764444


Q ss_pred             ecccccccccccccCCCCCccceeeccccccccc
Q 038945          119 VLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKR  152 (363)
Q Consensus       119 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~  152 (363)
                      ++..-+         ..+.++..+++.+.+.+..
T Consensus       506 iP~~l~---------~~~~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        506 VPAALG---------GRLLHRASFNFTDNAGLCG  530 (623)
T ss_pred             CChHHh---------hccccCceEEecCCccccC
Confidence            442110         1233556777777665543

>PLN03150 hypothetical protein; Provisional

Probab=96.61  E-value=0.0035  Score=63.55  Aligned_cols=81  Identities=17%  Similarity=0.101  Sum_probs=38.5

Q ss_pred             ccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccc
Q 038945          199 LKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVF  278 (363)
Q Consensus       199 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l  278 (363)
                      ++.|+++++..-..+|..+..+++|+.|+++++.-...+|..  ++.+++|+.|+++++.....++        +.+..+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~--~~~l~~L~~LdLs~N~lsg~iP--------~~l~~L  489 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS--LGSITSLEVLDLSYNSFNGSIP--------ESLGQL  489 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH--HhCCCCCCEEECCCCCCCCCCc--------hHHhcC
Confidence            445555554433344444555566666666554322233322  4455566666665553222211        113445


Q ss_pred             cccceeccccc
Q 038945          279 RKLEYLGLDCL  289 (363)
Q Consensus       279 ~~L~~L~l~~c  289 (363)
                      ++|+.|+++++
T Consensus       490 ~~L~~L~Ls~N  500 (623)
T PLN03150        490 TSLRILNLNGN  500 (623)
T ss_pred             CCCCEEECcCC
Confidence            55666665554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.55  E-value=0.00083  Score=60.98  Aligned_cols=235  Identities=17%  Similarity=0.163  Sum_probs=128.6

Q ss_pred             ccccccccCCCceeEEEeeecccceeeeccCCCch----hhhhhhccccccccceEecccCcCcccc-cccC-cCCCCCC
Q 038945            3 TFSLGILSTPKLHKVQVTVKEEGELYHREGNLNST----IQKCYIEMIGFRDIENIKLSLFPRLKEI-WHNQ-ALPVSFF   76 (363)
Q Consensus         3 ~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~----~~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~~~-~l~~~~l   76 (363)
                      ..+..+.+-++|+.++++.-.       .|.+...    +.-+...+.+++.|++|+||++- +..- +... .+. .++
T Consensus        49 ~i~~~L~~~~~L~~v~~sd~f-------tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA-~G~~g~~~l~~ll-~s~  119 (382)
T KOG1909|consen   49 AIAKVLASKKELREVNLSDMF-------TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA-FGPKGIRGLEELL-SSC  119 (382)
T ss_pred             HHHHHHhhcccceeeehHhhh-------cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc-cCccchHHHHHHH-Hhc
Confidence            445556778899999888210       1222222    22244566788999999999875 3310 1000 022 368


Q ss_pred             CCccEEEecCCCCCcccCchh------------HHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeec
Q 038945           77 NNLRHLVLDDCKNMSSAIPAN------------LIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRL  144 (363)
Q Consensus        77 ~~L~~L~l~~c~~l~~~~p~~------------~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  144 (363)
                      .+|++|++.+|. +.......            .++.-+.|+++....+ .++.-+......     .....+.|+.+++
T Consensus       120 ~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~-----~~~~~~~leevr~  192 (382)
T KOG1909|consen  120 TDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAE-----AFQSHPTLEEVRL  192 (382)
T ss_pred             cCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHH-----HHHhccccceEEE
Confidence            999999999994 43222211            1334567888877653 344332111000     0123466777766


Q ss_pred             ccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcc----cccccccCC
Q 038945          145 IDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQ----KLVPASCYL  220 (363)
Q Consensus       145 ~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~----~l~~~~~~~  220 (363)
                      .... +.  ..    +..                         ....++...++|+.|++.++-.-.    .+...+..+
T Consensus       193 ~qN~-I~--~e----G~~-------------------------al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~  240 (382)
T KOG1909|consen  193 SQNG-IR--PE----GVT-------------------------ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW  240 (382)
T ss_pred             eccc-cc--Cc----hhH-------------------------HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence            5331 00  00    000                         012234445889999998874322    223456678


Q ss_pred             CCCCEEeeccCcCccccCchhhh----hhccccCeEeeccCcchhhhhccCccccccccccccccceecccccc
Q 038945          221 ENLATLEVSKCHGLINLLTLSTS----ESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLP  290 (363)
Q Consensus       221 ~~L~~L~l~~c~~l~~~~~~~~~----~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  290 (363)
                      ++|+.+.+++|. ++.-...++.    ...|+|+.|.+.+|..-.+-...    ....+...|.|+.|.+.+|.
T Consensus       241 ~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~----la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  241 PHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA----LAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             chheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH----HHHHHhcchhhHHhcCCccc
Confidence            899999999994 3333322222    34689999999887643221000    00012336788888888863

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.35  E-value=0.00053  Score=57.64  Aligned_cols=61  Identities=18%  Similarity=0.324  Sum_probs=26.5

Q ss_pred             ccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccC-CCcCCCCcceeeccc
Q 038945          278 FRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPKLNKVKPTE  338 (363)
Q Consensus       278 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~i~~  338 (363)
                      +++++.|.+.+|..+.++..+....-.++|+.|++++|+.+++-.. .+..+++|+.|++++
T Consensus       124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            4444444444444444443333223344455555555555543221 222444455444443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.15  E-value=0.002  Score=57.54  Aligned_cols=37  Identities=16%  Similarity=0.181  Sum_probs=16.7

Q ss_pred             CCCCccEEEecCCCCCccc-CchhHHhhcCCCCEEEEcc
Q 038945           75 FFNNLRHLVLDDCKNMSSA-IPANLIRCLNNLASLEVRN  112 (363)
Q Consensus        75 ~l~~L~~L~l~~c~~l~~~-~p~~~l~~l~~L~~L~l~~  112 (363)
                      .+..++++++.++. +++- -...++.++|.|+.|+++.
T Consensus        69 ~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~  106 (418)
T KOG2982|consen   69 SVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSC  106 (418)
T ss_pred             Hhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccC
Confidence            34455555555542 2111 1233345555555555553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.06  E-value=0.00024  Score=62.52  Aligned_cols=84  Identities=23%  Similarity=0.205  Sum_probs=61.8

Q ss_pred             ccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccc
Q 038945           48 FRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNA  127 (363)
Q Consensus        48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~  127 (363)
                      +.+.++|+.++|. +.++....     .|+.|+.|.++-+ +++...|   +..|++|++|++..+. +.++..+.+   
T Consensus        18 l~~vkKLNcwg~~-L~DIsic~-----kMp~lEVLsLSvN-kIssL~p---l~rCtrLkElYLRkN~-I~sldEL~Y---   83 (388)
T KOG2123|consen   18 LENVKKLNCWGCG-LDDISICE-----KMPLLEVLSLSVN-KISSLAP---LQRCTRLKELYLRKNC-IESLDELEY---   83 (388)
T ss_pred             HHHhhhhcccCCC-ccHHHHHH-----hcccceeEEeecc-ccccchh---HHHHHHHHHHHHHhcc-cccHHHHHH---
Confidence            3567899999997 88866555     8999999999976 5676677   8899999999998643 555544433   


Q ss_pred             cccccCCCCCccceeeccccccc
Q 038945          128 DKEHLCPLFPKLFSLRLIDLPKL  150 (363)
Q Consensus       128 ~~~~~~~~l~~L~~L~l~~~~~L  150 (363)
                           ..++|+|+.|-|...|..
T Consensus        84 -----LknlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   84 -----LKNLPSLRTLWLDENPCC  101 (388)
T ss_pred             -----HhcCchhhhHhhccCCcc
Confidence                 345777777766655543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.92  E-value=0.00096  Score=56.15  Aligned_cols=17  Identities=24%  Similarity=0.518  Sum_probs=7.4

Q ss_pred             CCCCCEEeeccCcCccc
Q 038945          220 LENLATLEVSKCHGLIN  236 (363)
Q Consensus       220 ~~~L~~L~l~~c~~l~~  236 (363)
                      .++|+.|++++|+++++
T Consensus       150 ~~~L~~L~lsgC~rIT~  166 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITD  166 (221)
T ss_pred             ccchheeeccCCCeech
Confidence            34444444444444444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.61  E-value=0.0025  Score=56.32  Aligned_cols=103  Identities=19%  Similarity=0.211  Sum_probs=63.3

Q ss_pred             CCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945          196 FANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC  275 (363)
Q Consensus       196 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  275 (363)
                      +.+.++|+.++|. +.++.. ...++.|+.|.++- ++++.+.+   +..+++|+.||+..+. +.++      +++..+
T Consensus        18 l~~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLSv-NkIssL~p---l~rCtrLkElYLRkN~-I~sl------dEL~YL   84 (388)
T KOG2123|consen   18 LENVKKLNCWGCG-LDDISI-CEKMPLLEVLSLSV-NKISSLAP---LQRCTRLKELYLRKNC-IESL------DELEYL   84 (388)
T ss_pred             HHHhhhhcccCCC-ccHHHH-HHhcccceeEEeec-cccccchh---HHHHHHHHHHHHHhcc-cccH------HHHHHH
Confidence            3677888888885 444422 24578888888864 45555532   5678888888887542 2221      133445


Q ss_pred             ccccccceecccccccccccCCC---CcccCCCCccEEe
Q 038945          276 IVFRKLEYLGLDCLPSLTSFCLG---NYALEFPSLEHVV  311 (363)
Q Consensus       276 ~~l~~L~~L~l~~c~~L~~~~~~---~~~~~~~~L~~L~  311 (363)
                      .++|+|+.|.|..++.-..-...   .....+|+|++|+
T Consensus        85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            67888888888876654433221   0123467777775

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.29  E-value=0.091  Score=44.54  Aligned_cols=86  Identities=16%  Similarity=0.211  Sum_probs=43.9

Q ss_pred             ccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCC--CcccCchhHHhhcCCCCEEEEccCCCcceecccccc
Q 038945           48 FRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKN--MSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEEL  125 (363)
Q Consensus        48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~--l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~  125 (363)
                      ++.|.+|.+.++. ++.+.... .  ..+|+|+.|.+.++.-  +.+..|   +..||.|++|.+-+++ ++.-...   
T Consensus        63 l~rL~tLll~nNr-It~I~p~L-~--~~~p~l~~L~LtnNsi~~l~dl~p---La~~p~L~~Ltll~Np-v~~k~~Y---  131 (233)
T KOG1644|consen   63 LPRLHTLLLNNNR-ITRIDPDL-D--TFLPNLKTLILTNNSIQELGDLDP---LASCPKLEYLTLLGNP-VEHKKNY---  131 (233)
T ss_pred             ccccceEEecCCc-ceeeccch-h--hhccccceEEecCcchhhhhhcch---hccCCccceeeecCCc-hhcccCc---
Confidence            4556666776665 66554443 1  2466677777766421  223333   5556667777666544 2211110   


Q ss_pred             cccccccCCCCCccceeecccc
Q 038945          126 NADKEHLCPLFPKLFSLRLIDL  147 (363)
Q Consensus       126 ~~~~~~~~~~l~~L~~L~l~~~  147 (363)
                         -.++.-.+|+|+.|++.+.
T Consensus       132 ---R~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  132 ---RLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ---eeEEEEecCcceEeehhhh
Confidence               1112235666777666543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.18  E-value=0.073  Score=47.81  Aligned_cols=64  Identities=23%  Similarity=0.231  Sum_probs=41.4

Q ss_pred             cccCCCccEEEeccCcCcccccccc-cCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCc
Q 038945          193 NKVFANLKSLEISECSQLQKLVPAS-CYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCK  258 (363)
Q Consensus       193 l~~l~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  258 (363)
                      +.++|.|+.|++++++- ....... .-..+|+.|.+.+. .+..-...++...+|.++.|.++++.
T Consensus        93 le~lP~l~~LNls~N~L-~s~I~~lp~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N~  157 (418)
T KOG2982|consen   93 LEQLPALTTLNLSCNSL-SSDIKSLPLPLKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDNS  157 (418)
T ss_pred             HhcCccceEeeccCCcC-CCccccCcccccceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhccch
Confidence            56679999999998753 2222222 24679999999774 33222233446678888888877753

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=91.53  E-value=0.2  Score=42.56  Aligned_cols=64  Identities=14%  Similarity=0.175  Sum_probs=47.2

Q ss_pred             ccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCc-ccCchhHHhhcCCCCEEEEccCC
Q 038945           48 FRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMS-SAIPANLIRCLNNLASLEVRNCD  114 (363)
Q Consensus        48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~-~~~p~~~l~~l~~L~~L~l~~~~  114 (363)
                      +++|+.|.+.+++ +.++..-.  +...||+|++|.+-+++--. ..--.+++..+|+|+.||...-.
T Consensus        87 ~p~l~~L~LtnNs-i~~l~dl~--pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   87 LPNLKTLILTNNS-IQELGDLD--PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ccccceEEecCcc-hhhhhhcc--hhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            5889999999987 77654444  23479999999998875432 22345668889999999987643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=91.25  E-value=0.16  Score=44.75  Aligned_cols=88  Identities=27%  Similarity=0.298  Sum_probs=50.5

Q ss_pred             ccccceEecccCc-CcccccccCcCCCCCCCCccEEEecCCCCC--cccCchhHHhhcCCCCEEEEccCCCcceeccccc
Q 038945           48 FRDIENIKLSLFP-RLKEIWHNQALPVSFFNNLRHLVLDDCKNM--SSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEE  124 (363)
Q Consensus        48 ~~~L~~L~l~~~~-~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l--~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~  124 (363)
                      +++|++|.++.+. .+.. .... +. ..+|+|+++++++++.-  ...-|   +..+++|..|++..|.... ..... 
T Consensus        64 Lp~LkkL~lsdn~~~~~~-~l~v-l~-e~~P~l~~l~ls~Nki~~lstl~p---l~~l~nL~~Ldl~n~~~~~-l~dyr-  135 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSG-GLEV-LA-EKAPNLKVLNLSGNKIKDLSTLRP---LKELENLKSLDLFNCSVTN-LDDYR-  135 (260)
T ss_pred             cchhhhhcccCCcccccc-ccee-hh-hhCCceeEEeecCCccccccccch---hhhhcchhhhhcccCCccc-cccHH-
Confidence            4788999998772 1221 1111 12 35699999999887432  22223   6778888888888876443 11111 


Q ss_pred             ccccccccCCCCCccceeeccccc
Q 038945          125 LNADKEHLCPLFPKLFSLRLIDLP  148 (363)
Q Consensus       125 ~~~~~~~~~~~l~~L~~L~l~~~~  148 (363)
                           ..+...+++|+.|+-.+..
T Consensus       136 -----e~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  136 -----EKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             -----HHHHHHhhhhccccccccC
Confidence                 1112356777777655443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=90.99  E-value=0.02  Score=57.27  Aligned_cols=62  Identities=16%  Similarity=0.168  Sum_probs=40.4

Q ss_pred             ccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCC
Q 038945           44 EMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCD  114 (363)
Q Consensus        44 ~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~  114 (363)
                      .+..|++|++|||+++. +..+|.-.   ...+ +|+.|.++++ -++....   +.++++|+.||++++.
T Consensus       204 ~Lr~l~~LkhLDlsyN~-L~~vp~l~---~~gc-~L~~L~lrnN-~l~tL~g---ie~LksL~~LDlsyNl  265 (1096)
T KOG1859|consen  204 NLRRLPKLKHLDLSYNC-LRHVPQLS---MVGC-KLQLLNLRNN-ALTTLRG---IENLKSLYGLDLSYNL  265 (1096)
T ss_pred             HHHhcccccccccccch-hccccccc---hhhh-hheeeeeccc-HHHhhhh---HHhhhhhhccchhHhh
Confidence            45567888888888776 77655332   0122 3888888876 3454333   7778888888887643

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.16  E-value=0.22  Score=24.24  Aligned_cols=15  Identities=7%  Similarity=0.149  Sum_probs=6.9

Q ss_pred             CccEEeeccCCCcccc
Q 038945          306 SLEHVVVRQCPTMKIF  321 (363)
Q Consensus       306 ~L~~L~l~~c~~l~~l  321 (363)
                      +|+.|++++|. ++.+
T Consensus         2 ~L~~L~l~~n~-L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNR-LTSL   16 (17)
T ss_dssp             T-SEEEETSS---SSE
T ss_pred             ccCEEECCCCC-CCCC
Confidence            45666666653 5544

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=90.08  E-value=0.2  Score=48.26  Aligned_cols=82  Identities=20%  Similarity=0.145  Sum_probs=52.4

Q ss_pred             cccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccc
Q 038945           45 MIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEE  124 (363)
Q Consensus        45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~  124 (363)
                      +..+.+|+.|++.++. ++.+....    .++++|++|+++++ .+...-+   +..++.|+.|+++++. +..+..+. 
T Consensus        91 l~~~~~l~~l~l~~n~-i~~i~~~l----~~~~~L~~L~ls~N-~I~~i~~---l~~l~~L~~L~l~~N~-i~~~~~~~-  159 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNK-IEKIENLL----SSLVNLQVLDLSFN-KITKLEG---LSTLTLLKELNLSGNL-ISDISGLE-  159 (414)
T ss_pred             cccccceeeeeccccc-hhhcccch----hhhhcchheecccc-ccccccc---hhhccchhhheeccCc-chhccCCc-
Confidence            4556778888888776 66644323    46888888888876 4555455   6667778888888753 55544322 


Q ss_pred             ccccccccCCCCCccceeecccc
Q 038945          125 LNADKEHLCPLFPKLFSLRLIDL  147 (363)
Q Consensus       125 ~~~~~~~~~~~l~~L~~L~l~~~  147 (363)
                                .+++|+.++++++
T Consensus       160 ----------~l~~L~~l~l~~n  172 (414)
T KOG0531|consen  160 ----------SLKSLKLLDLSYN  172 (414)
T ss_pred             ----------cchhhhcccCCcc
Confidence                      2555666665543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=89.96  E-value=0.24  Score=25.86  Aligned_cols=20  Identities=10%  Similarity=0.114  Sum_probs=12.4

Q ss_pred             CccEEeeccCCCcccccCCCc
Q 038945          306 SLEHVVVRQCPTMKIFSQGVV  326 (363)
Q Consensus       306 ~L~~L~l~~c~~l~~l~~~~~  326 (363)
                      +|++|++++| +++.+|.++.
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTT
T ss_pred             CccEEECCCC-cCEeCChhhc
Confidence            3667777666 6666665543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=89.38  E-value=0.063  Score=53.83  Aligned_cols=135  Identities=17%  Similarity=0.154  Sum_probs=76.4

Q ss_pred             CCccEEEeccCcCcccc-cccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccC-cchhhhhccCcccc---
Q 038945          197 ANLKSLEISECSQLQKL-VPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDC-KMMEEIIQSQVGEE---  271 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c-~~l~~~~~~~~~~~---  271 (363)
                      ++++.|.+-..+.-.-. |..+..|..|++|.+++|+--+.....   +-=..|+.|.-.+- ..++.+++.-+++.   
T Consensus        84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~---~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns  160 (1096)
T KOG1859|consen   84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQ---ELRHQLEKLICHNSLDALRHVFASCGGDISNS  160 (1096)
T ss_pred             hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhH---HHHHhhhhhhhhccHHHHHHHHHHhccccccc
Confidence            45555555544432222 556778999999999999644322211   11134555543321 22333332221110   


Q ss_pred             ------------------c-cccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcc
Q 038945          272 ------------------A-EDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLN  332 (363)
Q Consensus       272 ------------------~-~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~  332 (363)
                                        . +.+.-+|-|+.|+++++ ++.++. .  ...+++|++|+++ .+.++.+|.--.-...|+
T Consensus       161 ~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~-~--Lr~l~~LkhLDls-yN~L~~vp~l~~~gc~L~  235 (1096)
T KOG1859|consen  161 PVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD-N--LRRLPKLKHLDLS-YNCLRHVPQLSMVGCKLQ  235 (1096)
T ss_pred             hhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH-H--HHhcccccccccc-cchhccccccchhhhhhe
Confidence                              0 11334677888888874 455554 2  6778999999994 447777775333223489


Q ss_pred             eeecccC
Q 038945          333 KVKPTEE  339 (363)
Q Consensus       333 ~L~i~~~  339 (363)
                      .|.+.+|
T Consensus       236 ~L~lrnN  242 (1096)
T KOG1859|consen  236 LLNLRNN  242 (1096)
T ss_pred             eeeeccc
Confidence            9999888

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=89.30  E-value=0.21  Score=48.14  Aligned_cols=92  Identities=15%  Similarity=0.123  Sum_probs=61.8

Q ss_pred             chhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCC
Q 038945           36 STIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDS  115 (363)
Q Consensus        36 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~  115 (363)
                      +.+.++...+..+++|++|+++++. ++.+....     .++.|+.|++.++. +.....   +..+++|+.+++.++. 
T Consensus       105 n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~-----~l~~L~~L~l~~N~-i~~~~~---~~~l~~L~~l~l~~n~-  173 (414)
T KOG0531|consen  105 NKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLS-----TLTLLKELNLSGNL-ISDISG---LESLKSLKLLDLSYNR-  173 (414)
T ss_pred             cchhhcccchhhhhcchheeccccc-cccccchh-----hccchhhheeccCc-chhccC---CccchhhhcccCCcch-
Confidence            4455555446678999999999987 88755433     67889999999984 444333   5558899999998765 


Q ss_pred             cceecccccccccccccCCCCCccceeecccc
Q 038945          116 LEEVLHLEELNADKEHLCPLFPKLFSLRLIDL  147 (363)
Q Consensus       116 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  147 (363)
                      +..+...        . ...+.+++.+.+.+.
T Consensus       174 i~~ie~~--------~-~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  174 IVDIEND--------E-LSELISLEELDLGGN  196 (414)
T ss_pred             hhhhhhh--------h-hhhccchHHHhccCC
Confidence            3333210        0 125667777776654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=88.52  E-value=1.3  Score=34.48  Aligned_cols=82  Identities=20%  Similarity=0.277  Sum_probs=42.8

Q ss_pred             cccCCCceeEEEeeecccceeeeccCCCchhhhhh-hccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecC
Q 038945            8 ILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCY-IEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDD   86 (363)
Q Consensus         8 ~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~   86 (363)
                      +..+++|+.+.+.               ..+..+. .....++.|+.+++.+.  +..++...   ...+++|+.+.+.+
T Consensus         8 F~~~~~l~~i~~~---------------~~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~---F~~~~~l~~i~~~~   67 (129)
T PF13306_consen    8 FYNCSNLESITFP---------------NTIKKIGENAFSNCTSLKSINFPNN--LTSIGDNA---FSNCKSLESITFPN   67 (129)
T ss_dssp             TTT-TT--EEEET---------------ST--EE-TTTTTT-TT-SEEEESST--TSCE-TTT---TTT-TT-EEEEETS
T ss_pred             HhCCCCCCEEEEC---------------CCeeEeChhhccccccccccccccc--ccccceee---eecccccccccccc
Confidence            3556777777776               1222222 12345678899988763  55544333   24677899999965


Q ss_pred             CCCCcccCchhHHhhcCCCCEEEEcc
Q 038945           87 CKNMSSAIPANLIRCLNNLASLEVRN  112 (363)
Q Consensus        87 c~~l~~~~p~~~l~~l~~L~~L~l~~  112 (363)
                        .+.. .+...+..+++|+.+.+..
T Consensus        68 --~~~~-i~~~~F~~~~~l~~i~~~~   90 (129)
T PF13306_consen   68 --NLKS-IGDNAFSNCTNLKNIDIPS   90 (129)
T ss_dssp             --TT-E-E-TTTTTT-TTECEEEETT
T ss_pred             --cccc-cccccccccccccccccCc
Confidence              3333 3445577889999999864

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=88.31  E-value=0.091  Score=41.85  Aligned_cols=68  Identities=19%  Similarity=0.132  Sum_probs=33.1

Q ss_pred             hhhhhhhcccc-ccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEcc
Q 038945           37 TIQKCYIEMIG-FRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRN  112 (363)
Q Consensus        37 ~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~  112 (363)
                      .++++|..+.. ++.+++|++.++. +.++|...    ..++.|+.|+++.++- . ..|.- +..+.+|-.|+..+
T Consensus        64 ~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~----Aam~aLr~lNl~~N~l-~-~~p~v-i~~L~~l~~Lds~~  132 (177)
T KOG4579|consen   64 GFKKFPKKFTIKFPTATTLNLANNE-ISDVPEEL----AAMPALRSLNLRFNPL-N-AEPRV-IAPLIKLDMLDSPE  132 (177)
T ss_pred             hhhhCCHHHhhccchhhhhhcchhh-hhhchHHH----hhhHHhhhcccccCcc-c-cchHH-HHHHHhHHHhcCCC
Confidence            34444444432 4456666666654 55555554    3566666666665432 2 13332 23355555554443

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=87.05  E-value=0.4  Score=26.14  Aligned_cols=18  Identities=17%  Similarity=0.353  Sum_probs=13.7

Q ss_pred             CCCccEEeeccCCCcccc
Q 038945          304 FPSLEHVVVRQCPTMKIF  321 (363)
Q Consensus       304 ~~~L~~L~l~~c~~l~~l  321 (363)
                      |++|++|++++|+++++.
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            567888888888887753

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=86.27  E-value=0.52  Score=41.52  Aligned_cols=62  Identities=27%  Similarity=0.336  Sum_probs=33.2

Q ss_pred             CCCccEEEeccC--cCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCc
Q 038945          196 FANLKSLEISEC--SQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCK  258 (363)
Q Consensus       196 l~~L~~L~l~~c--~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  258 (363)
                      |++|++|.++++  +....+......+++|+++.+++. +++.+....-...+.+|..|++.+|.
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchhhhhcccCC
Confidence            367777777766  333333333344577777777664 33333222223455566666666665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=85.31  E-value=5  Score=31.05  Aligned_cols=57  Identities=16%  Similarity=0.207  Sum_probs=20.2

Q ss_pred             ccCCCccEEEeccCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeec
Q 038945          194 KVFANLKSLEISECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMS  255 (363)
Q Consensus       194 ~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~  255 (363)
                      .+...|+.+.+.+  .++.+.. .+..+.+|+.+.+..  .+..++.. .+..+++|+.+.+.
T Consensus         9 ~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~-~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    9 YNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDN-AFSNCKSLESITFP   66 (129)
T ss_dssp             TT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TT-TTTT-TT-EEEEET
T ss_pred             hCCCCCCEEEECC--CeeEeChhhcccccccccccccc--ccccccee-eeeccccccccccc
Confidence            3334555555543  2333322 233444556555543  23333321 23344455555553

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=81.72  E-value=0.3  Score=38.97  Aligned_cols=105  Identities=16%  Similarity=0.213  Sum_probs=66.3

Q ss_pred             CCCEEeeccCcCccccCc-hhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCc
Q 038945          222 NLATLEVSKCHGLINLLT-LSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNY  300 (363)
Q Consensus       222 ~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~  300 (363)
                      -+..+++++|+-. .++. ...+.....|...+++++. +++++..       ....+|.++.+++.+ ..+.++|++  
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~-fk~fp~k-------ft~kf~t~t~lNl~~-neisdvPeE--   95 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNG-FKKFPKK-------FTIKFPTATTLNLAN-NEISDVPEE--   95 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccch-hhhCCHH-------Hhhccchhhhhhcch-hhhhhchHH--
Confidence            3556778887533 2221 1122344566666777753 3433221       112466788888887 477888877  


Q ss_pred             ccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          301 ALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       301 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      .-.+|.|+.|+++.. .+...|.-+..+.++..|+..++
T Consensus        96 ~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen   96 LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcCCCC
Confidence            777899999999555 55556666667778888887777

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	363
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 6e-09
 Identities = 59/317 (18%), Positives = 97/317 (30%), Gaps = 91/317 (28%)

Query: 26  ELYHREGNLNSTIQKCYIEMIG--FRDIENI-KLSLFPRLKEIWH-NQALPVSFFNNLRH 81
                E    S + + YIE     + D +   K ++  RL+      QAL       LR 
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQAL-----LELRP 149

Query: 82  ----------------LVLDDCKNMSSAIPANLIRCLNNLAS-LEVRNCDSLEEVL-HLE 123
                           + LD C +        +   ++     L ++NC+S E VL  L+
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYK------VQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 124 EL--------NADKEHLCPLFPKLFSL--RLIDLPKLKRFCN--------FTGNIIEL-- 163
           +L         +  +H   +  ++ S+   L  L K K + N                  
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 164 LEC---------NFIRIKSNLMTRLFALQHLLK--ENAESNKVFANLKSLEISECSQLQK 212
           L C               S   T   +L H        E   +    K L+       Q 
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL--KYLDCRP----QD 317

Query: 213 LVPASCYLENLATLEVSKCHGL-INLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVG-- 269
           L P           EV   +   ++++  S  + L   +  K  +C  +  II+S +   
Sbjct: 318 L-PR----------EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 270 EEAE------DCIVFRK 280
           E AE         VF  
Sbjct: 367 EPAEYRKMFDRLSVFPP 383

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 5e-07
 Identities = 36/232 (15%), Positives = 71/232 (30%), Gaps = 58/232 (25%)

Query: 33  NLNST-IQKCYIEMIGFRDIENIKLSLFPRLKEIWHN--QALPVSFFNNL--RHLVLDDC 87
            L     +K +  +  F    +I   L   +   W +  ++  +   N L    LV    
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLI---WFDVIKSDVMVVVNKLHKYSLVEKQP 421

Query: 88  KNMSSAIP-----------------ANLIRCLNNLASLEVRNCDSLEE--------VLHL 122
           K  + +IP                  +++   N   + +  +                HL
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481

Query: 123 EELNADKEHLCPLFPKLF-SLRLIDLPKLKRF---CNFTGNIIELLE-----CNFIRIKS 173
           +  N +      LF  +F   R ++  K++      N +G+I+  L+       +I    
Sbjct: 482 K--NIEHPERMTLFRMVFLDFRFLE-QKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538

Query: 174 NLMTRLF-ALQHLLKENAESNKVFANLKSLEISECS---QLQKLVPASCYLE 221
               RL  A+   L    E N        L  S+ +   ++  +       E
Sbjct: 539 PKYERLVNAILDFLP-KIEEN--------LICSKYTDLLRIALMAEDEAIFE 581

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 53/333 (15%), Positives = 106/333 (31%), Gaps = 72/333 (21%)

Query: 23  EEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWH--NQALPVSFFNNLR 80
           E GE  ++  ++ S  +  +++    +D++++  S+  + +EI H       VS    L 
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK-EEIDHIIMSKDAVSGTLRLF 68

Query: 81  HLVLDDCKN-----MSSAIPANL------IRCLNNLASLEVRNCDSLEEVLH-------- 121
             +L   +      +   +  N       I+      S+  R      + L+        
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 122 -----LEELNADKEHLCPLFPKLF------------SLRLIDLPKLKRFCNFTGNI--IE 162
                L+     ++ L  L P                + L      K  C     I  + 
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 163 LLECNFIRIKSNLMTRLFALQHLLKENAESN-KVFANLKSLEISECSQLQKLVPASCY-- 219
           L  CN       ++  L  L + +  N  S     +N+K    S  ++L++L+ +  Y  
Sbjct: 189 LKNCN---SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 220 ----LENLATLEVSK-----CHGLINLLT--LSTSESLVNLERMKMSDCKMMEEIIQSQV 268
               L N+   +        C  L+   T     ++ L       +S    ++    +  
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILL--TTRFKQVTDFLSAATTTHIS----LDHHSMTLT 299

Query: 269 GEEAEDCIVFRKLEYLGL--DCLPSLTSFCLGN 299
            +E +   +  K  YL      LP        N
Sbjct: 300 PDEVKS--LLLK--YLDCRPQDLPREV--LTTN 326

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 43/287 (14%), Positives = 86/287 (29%), Gaps = 43/287 (14%)

Query: 69  QALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCD-------SLEEVL- 120
             L  +  ++L  L LD C   ++    +++     + +L +            L E+  
Sbjct: 130 DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189

Query: 121 ---HLEELNADK-----------EHLCPLFPKLFSLRLIDLPK--LKRFCNFTGNIIEL- 163
               LE LN              E +      L S+++ D     L  F     N+ E  
Sbjct: 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFC 249

Query: 164 -LECNFIRIKSNLMTRLFALQHLLKEN---------AESNKVFANLKSLEISECSQL-QK 212
               N           L   + L +                  A ++ L++       + 
Sbjct: 250 GGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED 309

Query: 213 LVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMME--EIIQSQVGE 270
                    NL  LE     G   L  L  ++    L+R+++      +  E  +  V +
Sbjct: 310 HCTLIQKCPNLEVLETRNVIGDRGLEVL--AQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367

Query: 271 EAEDCIV--FRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC 315
                +    ++LEY+ +     +T+  L +      +L    +   
Sbjct: 368 RGLIALAQGCQELEYMAVYV-SDITNESLESIGTYLKNLCDFRLVLL 413

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 52/238 (21%), Positives = 90/238 (37%), Gaps = 41/238 (17%)

Query: 33  NLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIW--HNQ--ALPVSFFNNLRHL-VLDDC 87
            + +  +   +     + +   + + FP L+E+    N   A+    FNNL +L  L   
Sbjct: 29  GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88

Query: 88  KNMSSAIPANLIRCLNNLASLEVRNC-------DSLEEVLHLEELNADKEHLCPLFPKLF 140
            N    IP  +   L+NL  L++             +++ +L+ L      L  +  + F
Sbjct: 89  SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148

Query: 141 SLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHL-LKEN---AESNKVF 196
           S     L  L+         + L +CN   I +  ++ L  L  L L+     A  +  F
Sbjct: 149 S----GLNSLE--------QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196

Query: 197 A---NLKSLEISECSQLQKLVPASCYLENLATLEVSKCH----------GLINLLTLS 241
                LK LEIS    L  + P   Y  NL +L ++ C+           L+ L  L+
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLN 254

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 55/286 (19%), Positives = 90/286 (31%), Gaps = 45/286 (15%)

Query: 76  FNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLH-----------LEE 124
           F N + LVL  C+  S+   A +     NL  L++R  D  +   H           L  
Sbjct: 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188

Query: 125 LN----------ADKEHLCPLFPKLFSLRL---IDLPKLKRFCNFTGNIIELLECNFIRI 171
           LN          +  E L    P L SL+L   + L KL         + EL    +   
Sbjct: 189 LNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE 248

Query: 172 K-----SNLMTRLFALQHLLKENAESN----------KVFANLKSLEISECSQL-QKLVP 215
                 S L   L   + L   +   +           V + L +L +S  +     LV 
Sbjct: 249 VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVK 308

Query: 216 ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC 275
             C    L  L V        L  L  + +  +L  +++   +         + E+    
Sbjct: 309 LLCQCPKLQRLWVLDYIEDAGLEVL--ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366

Query: 276 IV--FRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMK 319
           +     KLE +   C   +T+  L   A   P++    +       
Sbjct: 367 VSMGCPKLESVLYFC-RQMTNAALITIARNRPNMTRFRLCIIEPKA 411

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 43/203 (21%), Positives = 70/203 (34%), Gaps = 36/203 (17%)

Query: 69  QALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNC------DSLEEVLHL 122
             LP     ++  LV+ D  N  +++PA        L +LEV              +L L
Sbjct: 53  TTLPDCLPAHITTLVIPD--NNLTSLPAL----PPELRTLEVSGNQLTSLPVLPPGLLEL 106

Query: 123 EELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIEL-LECNFIRIKSNLMTRLFA 181
              +    HL  L   L  L +    +L         + EL +  N +   ++L      
Sbjct: 107 SIFSNPLTHLPALPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQL---ASLPALPSE 162

Query: 182 LQHLLKENAESNK------VFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLI 235
           L  L    A +N+      + + L+ L +S+  QL  L P       L  L         
Sbjct: 163 LCKL---WAYNNQLTSLPMLPSGLQELSVSDN-QLASL-PTL--PSELYKLWAYN----- 210

Query: 236 NLLTLSTSESLVNLERMKMSDCK 258
           N LT S       L+ + +S  +
Sbjct: 211 NRLT-SLPALPSGLKELIVSGNR 232

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 41/215 (19%), Positives = 71/215 (33%), Gaps = 35/215 (16%)

Query: 69  QALPVSFFN--NLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNC------DSLEEVL 120
              P   F   +L+H+ +D    M   +P   ++    L +L +          S+  + 
Sbjct: 94  PQFPDQAFRLSHLQHMTIDAAGLME--LPDT-MQQFAGLETLTLARNPLRALPASIASLN 150

Query: 121 HLEELNADK----EHLCPLFPKLFSLRLI-DLPKLKRFCNFTGNIIELLECNFIRIKSNL 175
            L EL+         L        +      L  L+            LE   IR     
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR---------LEWTGIRSLPAS 201

Query: 176 MTRLFALQHL-LKEN--AESNKVFANLKSLE---ISECSQLQKLVPASCYLENLATLEVS 229
           +  L  L+ L ++ +  +       +L  LE   +  C+ L+   P       L  L + 
Sbjct: 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261

Query: 230 KCHGLINLLTLSTS-ESLVNLERMKMSDCKMMEEI 263
            C    NLLTL      L  LE++ +  C  +  +
Sbjct: 262 DCS---NLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 40.1 bits (93), Expect = 8e-04
 Identities = 35/230 (15%), Positives = 70/230 (30%), Gaps = 11/230 (4%)

Query: 28  YHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDC 87
           +    +L +      +    FR I     S    +      +        + +    +  
Sbjct: 298 HVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELS 357

Query: 88  KNMSSAIPANLIRCLNNLASLEVRNC-DSLEEVLHLEELNADKEHLCPLFPKLFSLRLID 146
              S+ +  + +     L  LE  N    L  +L +  L+        L     +L+ +D
Sbjct: 358 VEKSTVLQ-SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL-QYFSTLKAVD 415

Query: 147 LPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISE 206
                R         + L  N +        R+  L H         +    +  L++S 
Sbjct: 416 P---MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSH 472

Query: 207 CSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSD 256
             +L+ L PA   L  L  L+ S       L  +    +L  L+ + + +
Sbjct: 473 N-RLRALPPALAALRCLEVLQASDN----ALENVDGVANLPRLQELLLCN 517

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	363
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.84
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.79
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.78
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.75
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.75
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.75
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.75
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.75
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.74
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.74
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.74
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.73
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.73
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.72
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.72
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.72
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.71
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.71
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.71
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.71
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.7
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.7
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.7
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.7
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.69
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.69
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.69
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.69
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.68
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.68
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.68
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.68
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.67
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.67
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.67
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.66
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.66
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.66
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.66
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.66
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.65
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.64
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.64
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.64
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.64
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.62
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.62
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.61
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.61
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.6
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.59
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.59
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.59
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.59
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.58
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.57
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.56
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.56
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.56
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.55
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.55
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.54
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.54
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.54
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.54
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.53
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.52
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.51
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.49
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.48
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.47
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.47
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.46
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.45
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.45
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.44
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.44
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.43
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.43
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.43
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.42
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.4
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.4
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.39
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.37
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.36
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.36
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.34
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.27
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.27
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.26
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.26
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.24
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.24
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.23
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.23
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.2
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.2
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.03
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.02
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.97
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.96
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.95
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.93
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.93
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.92
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.91
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.89
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.87
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.87
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.83
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.81
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.75
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.75
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.66
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.65
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.63
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.55
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.54
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.53
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.52
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.51
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.47
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.43
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.37
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.37
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.37
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.36
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.26
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.19
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.11
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.03
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.03
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.02
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.01
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.98
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.97
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.91
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.68
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.55
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.38
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.36
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.1
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.62
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.39
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.08
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.06
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.73
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.23
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	91.17
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	86.56

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.84  E-value=7.9e-20  Score=168.85  Aligned_cols=232  Identities=17%  Similarity=0.230  Sum_probs=174.0

Q ss_pred             ccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccc
Q 038945           48 FRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNA  127 (363)
Q Consensus        48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~  127 (363)
                      .+.+++|+++++. ++.+|...    ..+++|++|+++++ ++. ..|.. ++.+++|++|+++++. +..++..     
T Consensus        80 ~~~l~~L~L~~n~-l~~lp~~l----~~l~~L~~L~L~~n-~l~-~lp~~-~~~l~~L~~L~Ls~n~-l~~lp~~-----  145 (328)
T 4fcg_A           80 QPGRVALELRSVP-LPQFPDQA----FRLSHLQHMTIDAA-GLM-ELPDT-MQQFAGLETLTLARNP-LRALPAS-----  145 (328)
T ss_dssp             STTCCEEEEESSC-CSSCCSCG----GGGTTCSEEEEESS-CCC-CCCSC-GGGGTTCSEEEEESCC-CCCCCGG-----
T ss_pred             ccceeEEEccCCC-chhcChhh----hhCCCCCEEECCCC-Ccc-chhHH-HhccCCCCEEECCCCc-cccCcHH-----
Confidence            4678888888876 77766555    46788888888877 455 35544 6778888888888764 4444321     


Q ss_pred             cccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccC
Q 038945          128 DKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISEC  207 (363)
Q Consensus       128 ~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c  207 (363)
                           ...+++|+.|++++|..+..++.....                           ......+.++++|+.|++++|
T Consensus       146 -----l~~l~~L~~L~L~~n~~~~~~p~~~~~---------------------------~~~~~~~~~l~~L~~L~L~~n  193 (328)
T 4fcg_A          146 -----IASLNRLRELSIRACPELTELPEPLAS---------------------------TDASGEHQGLVNLQSLRLEWT  193 (328)
T ss_dssp             -----GGGCTTCCEEEEEEETTCCCCCSCSEE---------------------------EC-CCCEEESTTCCEEEEEEE
T ss_pred             -----HhcCcCCCEEECCCCCCccccChhHhh---------------------------ccchhhhccCCCCCEEECcCC
Confidence                 235778888888877666554322210                           001122456799999999998


Q ss_pred             cCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceeccc
Q 038945          208 SQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLD  287 (363)
Q Consensus       208 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~  287 (363)
                      . +..+|..+..+++|++|+++++ .+..++..  +..+++|+.|++++|.....++.        .+..+++|++|+++
T Consensus       194 ~-l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~--l~~l~~L~~L~Ls~n~~~~~~p~--------~~~~l~~L~~L~L~  261 (328)
T 4fcg_A          194 G-IRSLPASIANLQNLKSLKIRNS-PLSALGPA--IHHLPKLEELDLRGCTALRNYPP--------IFGGRAPLKRLILK  261 (328)
T ss_dssp             C-CCCCCGGGGGCTTCCEEEEESS-CCCCCCGG--GGGCTTCCEEECTTCTTCCBCCC--------CTTCCCCCCEEECT
T ss_pred             C-cCcchHhhcCCCCCCEEEccCC-CCCcCchh--hccCCCCCEEECcCCcchhhhHH--------HhcCCCCCCEEECC
Confidence            5 5577778888999999999987 45566543  67899999999999886654422        35678999999999


Q ss_pred             ccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          288 CLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       288 ~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      +|..+..++..  +..+++|++|++++|+.+..+|..+..+++|+.+++..+
T Consensus       262 ~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          262 DCSNLLTLPLD--IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             TCTTCCBCCTT--GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             CCCchhhcchh--hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            99888888776  788999999999999999999999999999999999987

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.79  E-value=1.8e-18  Score=167.70  Aligned_cols=145  Identities=21%  Similarity=0.189  Sum_probs=107.2

Q ss_pred             cccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccc
Q 038945          191 ESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGE  270 (363)
Q Consensus       191 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  270 (363)
                      ..+..+++|+.|++++|..+..++.......+|++|+++++ .++.++. ..+..+++|+.|+++++. +..+       
T Consensus       194 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~-------  263 (477)
T 2id5_A          194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPY-LAVRHLVYLRFLNLSYNP-ISTI-------  263 (477)
T ss_dssp             TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCH-HHHTTCTTCCEEECCSSC-CCEE-------
T ss_pred             hhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCH-HHhcCccccCeeECCCCc-CCcc-------
Confidence            35677788999999988888888776666778999999887 5666653 246788999999999875 3322       


Q ss_pred             cccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCC-cCCCCcceeecccC-CCCCCcccc
Q 038945          271 EAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE-EDGDDEGCW  348 (363)
Q Consensus       271 ~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~i~~~-~~~~~~~~~  348 (363)
                      ....+..+++|+.|+++++ .+..+.... +..+++|++|+++++ .++.++... ..+++|+.|++++| -.+++.+.|
T Consensus       264 ~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~  340 (477)
T 2id5_A          264 EGSMLHELLRLQEIQLVGG-QLAVVEPYA-FRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPLACDCRLLW  340 (477)
T ss_dssp             CTTSCTTCTTCCEEECCSS-CCSEECTTT-BTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHH
T ss_pred             ChhhccccccCCEEECCCC-ccceECHHH-hcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCccCccchHh
Confidence            1223567899999999986 566554443 677899999999877 777777654 58999999999999 233333333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.78  E-value=3.1e-18  Score=159.01  Aligned_cols=127  Identities=16%  Similarity=0.195  Sum_probs=60.7

Q ss_pred             cccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccc
Q 038945          193 NKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEA  272 (363)
Q Consensus       193 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  272 (363)
                      +..+++|+.|++++|. +..++. +..+++|++|++++| .++.++   .+..+++|+.|++++|. +..+         
T Consensus       217 ~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~l~~n~-l~~~---------  280 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTN-QISDIN---AVKDLTKLKMLNVGSNQ-ISDI---------  280 (347)
T ss_dssp             GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC-CCCC---------
T ss_pred             hhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCC-ccCCCh---hHhcCCCcCEEEccCCc-cCCC---------
Confidence            3444555555555553 222222 345555555555554 233321   13455555555555552 2211         


Q ss_pred             cccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          273 EDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       273 ~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      +.+..+++|+.|++++|. +....... +..+++|++|++++|+ ++..+. +..+++|++|++++|
T Consensus       281 ~~~~~l~~L~~L~L~~n~-l~~~~~~~-l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          281 SVLNNLSQLNSLFLNNNQ-LGNEDMEV-IGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQ  343 (347)
T ss_dssp             GGGGGCTTCSEEECCSSC-CCGGGHHH-HHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC
T ss_pred             hhhcCCCCCCEEECcCCc-CCCcChhH-hhccccCCEEEccCCc-cccccC-hhhhhccceeehhhh
Confidence            123345566666666653 22222111 3445666666665553 443333 455666666666655

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.75  E-value=5.7e-17  Score=155.99  Aligned_cols=130  Identities=16%  Similarity=0.225  Sum_probs=100.9

Q ss_pred             CCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccc
Q 038945          197 ANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCI  276 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  276 (363)
                      ++|+.|+++++......+..+..+++|++|+++++. ++.++. ..+..+++|+.|++++|.. ..+       ....+.
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~l-~~~-------~~~~~~  344 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDD-NAFWGLTHLLKLNLSQNFL-GSI-------DSRMFE  344 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSCC-CEE-------CGGGGT
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccCh-hHhcCcccCCEEECCCCcc-CCc-------ChhHhc
Confidence            689999999987666667778889999999999874 555433 2367889999999999853 322       122356


Q ss_pred             cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCC-cCCCCcceeecccC
Q 038945          277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE  339 (363)
Q Consensus       277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~i~~~  339 (363)
                      .+++|++|+++++ .++.+.... +..+++|++|+++++ +++.+|.+. ..+++|+.|++++|
T Consensus       345 ~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          345 NLDKLEVLDLSYN-HIRALGDQS-FLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             TCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcccCCEEECCCC-cccccChhh-ccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCC
Confidence            7899999999997 556554432 677999999999776 788787755 58999999999999

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.75  E-value=6.1e-17  Score=155.42  Aligned_cols=242  Identities=15%  Similarity=0.175  Sum_probs=178.6

Q ss_pred             hhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCc
Q 038945           37 TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSL  116 (363)
Q Consensus        37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l  116 (363)
                      .+..+|..+.  ++++.|+++++. ++.++... +  ..+++|++|+++++ ++....+. .+..+++|++|+++++ .+
T Consensus        54 ~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~-~--~~l~~L~~L~Ls~n-~i~~i~~~-~~~~l~~L~~L~L~~n-~l  124 (440)
T 3zyj_A           54 NLREVPDGIS--TNTRLLNLHENQ-IQIIKVNS-F--KHLRHLEILQLSRN-HIRTIEIG-AFNGLANLNTLELFDN-RL  124 (440)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSCC-CCEECTTT-T--SSCSSCCEEECCSS-CCCEECGG-GGTTCSSCCEEECCSS-CC
T ss_pred             CcCcCCCCCC--CCCcEEEccCCc-CCeeCHHH-h--hCCCCCCEEECCCC-cCCccChh-hccCCccCCEEECCCC-cC
Confidence            4555666553  679999999987 77765333 2  57999999999998 56654444 4889999999999986 45


Q ss_pred             ceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccC
Q 038945          117 EEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVF  196 (363)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l  196 (363)
                      ..++..         ....+++|+.|+++++. ++.+.                                   ...+..+
T Consensus       125 ~~~~~~---------~~~~l~~L~~L~L~~N~-i~~~~-----------------------------------~~~~~~l  159 (440)
T 3zyj_A          125 TTIPNG---------AFVYLSKLKELWLRNNP-IESIP-----------------------------------SYAFNRI  159 (440)
T ss_dssp             SSCCTT---------TSCSCSSCCEEECCSCC-CCEEC-----------------------------------TTTTTTC
T ss_pred             CeeCHh---------HhhccccCceeeCCCCc-ccccC-----------------------------------HHHhhhC
Confidence            554421         13467899999998764 33321                                   1235667


Q ss_pred             CCccEEEeccCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945          197 ANLKSLEISECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC  275 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  275 (363)
                      ++|+.|+++++..+..++. .+..+++|++|+++++ .++.++.   +..+++|+.|+++++. +..+       ....+
T Consensus       160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~Ls~N~-l~~~-------~~~~~  227 (440)
T 3zyj_A          160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN---LTPLIKLDELDLSGNH-LSAI-------RPGSF  227 (440)
T ss_dssp             TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC---CTTCSSCCEEECTTSC-CCEE-------CTTTT
T ss_pred             cccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc---cCCCcccCEEECCCCc-cCcc-------Chhhh
Confidence            9999999999888887765 5678999999999997 5666664   5688999999999984 3333       12235


Q ss_pred             ccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCC-cCCCCcceeecccC-CCCCCccc
Q 038945          276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE-EDGDDEGC  347 (363)
Q Consensus       276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~i~~~-~~~~~~~~  347 (363)
                      ..+++|+.|++.++ .++.+.... +..+++|++|+++++ +++.++... ..+++|+.|++++| -.|++.+.
T Consensus       228 ~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~  298 (440)
T 3zyj_A          228 QGLMHLQKLWMIQS-QIQVIERNA-FDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL  298 (440)
T ss_dssp             TTCTTCCEEECTTC-CCCEECTTS-STTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCEECSSTTH
T ss_pred             ccCccCCEEECCCC-ceeEEChhh-hcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCccCCCCch
Confidence            67899999999986 566665543 667899999999877 777777655 58999999999999 23334433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.75  E-value=1.2e-17  Score=167.59  Aligned_cols=110  Identities=11%  Similarity=0.154  Sum_probs=70.9

Q ss_pred             cccccccCCCceeEEEeeecccc-----eeeeccCCCchhhhhhhccc--cccccceEecccCcCcccccccCcCCCCCC
Q 038945            4 FSLGILSTPKLHKVQVTVKEEGE-----LYHREGNLNSTIQKCYIEMI--GFRDIENIKLSLFPRLKEIWHNQALPVSFF   76 (363)
Q Consensus         4 ~~~~~~~~~~L~~l~~~~~~~~~-----~~~~~~~l~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l   76 (363)
                      ++..+..+++|++|+++......     .|-.. ......+.+|..+.  .+++|++|++++|.-...+|...    +.+
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l----~~l  272 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE-NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL----KAL  272 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT-TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT----TTC
T ss_pred             CCHHHhcccCCCEEECcCCcccccccccccccc-ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH----hcC
Confidence            45667889999999999321110     00000 00001112788888  88999999999887455556555    578


Q ss_pred             CCccEEEecCCCCCcc-cCchhHHhhc------CCCCEEEEccCCCcceec
Q 038945           77 NNLRHLVLDDCKNMSS-AIPANLIRCL------NNLASLEVRNCDSLEEVL  120 (363)
Q Consensus        77 ~~L~~L~l~~c~~l~~-~~p~~~l~~l------~~L~~L~l~~~~~l~~~~  120 (363)
                      ++|++|++++|..+.+ ..|.. ++.+      ++|++|++++|. +..++
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~-l~~ip  321 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNN-LKTFP  321 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSC-CSSCC
T ss_pred             CCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCc-CCccC
Confidence            8999999988854665 56655 5554      888888888764 44554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.75  E-value=3.9e-17  Score=162.89  Aligned_cols=279  Identities=15%  Similarity=0.022  Sum_probs=168.0

Q ss_pred             cccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCC
Q 038945            8 ILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDC   87 (363)
Q Consensus         8 ~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c   87 (363)
                      +..+++|+.|.+...              .+..+| .+..+++|++|++++|. ++.+|  .    -.+++|++|++++|
T Consensus       281 ~~~l~~L~~L~l~~~--------------~~~~l~-~l~~~~~L~~L~l~~n~-l~~lp--~----~~l~~L~~L~l~~n  338 (606)
T 3vq2_A          281 FHCLANVSAMSLAGV--------------SIKYLE-DVPKHFKWQSLSIIRCQ-LKQFP--T----LDLPFLKSLTLTMN  338 (606)
T ss_dssp             CGGGTTCSEEEEESC--------------CCCCCC-CCCTTCCCSEEEEESCC-CSSCC--C----CCCSSCCEEEEESC
T ss_pred             cccCCCCCEEEecCc--------------cchhhh-hccccccCCEEEccccc-Ccccc--c----CCCCccceeeccCC
Confidence            567788888888821              112233 44556677777777766 45443  1    14666666666666


Q ss_pred             CCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhc
Q 038945           88 KNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECN  167 (363)
Q Consensus        88 ~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~  167 (363)
                      ..... .+   +..+++|++|+++++. +..+.....       ....+++|+.|+++++. +..++....        .
T Consensus       339 ~~~~~-~~---~~~l~~L~~L~ls~n~-l~~~~~~~~-------~~~~~~~L~~L~L~~n~-l~~~~~~~~--------~  397 (606)
T 3vq2_A          339 KGSIS-FK---KVALPSLSYLDLSRNA-LSFSGCCSY-------SDLGTNSLRHLDLSFNG-AIIMSANFM--------G  397 (606)
T ss_dssp             SSCEE-CC---CCCCTTCCEEECCSSC-EEEEEECCH-------HHHCCSCCCEEECCSCS-EEEECCCCT--------T
T ss_pred             cCccc-hh---hccCCCCCEEECcCCc-cCCCcchhh-------hhccCCcccEeECCCCc-cccchhhcc--------C
Confidence            44332 22   4456666666666553 322210000       01245556666655543 222211000        0


Q ss_pred             cccchhhHHHHHHhhhhhhhhcc-cccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccc-cCchhhhhh
Q 038945          168 FIRIKSNLMTRLFALQHLLKENA-ESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLIN-LLTLSTSES  245 (363)
Q Consensus       168 ~~~l~~~L~l~~~~~~~l~~~~~-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~  245 (363)
                      ++++. .  +.+ ...++....+ ..+..+++|+.|++++|......+..+..+++|++|++++|.--.. .+.  .++.
T Consensus       398 l~~L~-~--L~l-~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~  471 (606)
T 3vq2_A          398 LEELQ-H--LDF-QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN--VFAN  471 (606)
T ss_dssp             CTTCC-E--EEC-TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS--CCTT
T ss_pred             CCCCC-e--eEC-CCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH--hhcc
Confidence            01110 0  000 0011111112 3567789999999999987666777788899999999999854332 332  3678


Q ss_pred             ccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCC
Q 038945          246 LVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV  325 (363)
Q Consensus       246 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~  325 (363)
                      +++|+.|++++|.. ..+       ....+..+++|++|++++| .+..+.... +..+++|++|++++| +++.+|..+
T Consensus       472 l~~L~~L~Ls~n~l-~~~-------~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~p~~~  540 (606)
T 3vq2_A          472 TTNLTFLDLSKCQL-EQI-------SWGVFDTLHRLQLLNMSHN-NLLFLDSSH-YNQLYSLSTLDCSFN-RIETSKGIL  540 (606)
T ss_dssp             CTTCCEEECTTSCC-CEE-------CTTTTTTCTTCCEEECCSS-CCSCEEGGG-TTTCTTCCEEECTTS-CCCCEESCG
T ss_pred             CCCCCEEECCCCcC-Ccc-------ChhhhcccccCCEEECCCC-cCCCcCHHH-ccCCCcCCEEECCCC-cCcccCHhH
Confidence            89999999999853 322       1223567899999999997 455543222 677899999999887 588999888


Q ss_pred             cCCC-CcceeecccC-CCCCCcc
Q 038945          326 VDAP-KLNKVKPTEE-EDGDDEG  346 (363)
Q Consensus       326 ~~~~-~L~~L~i~~~-~~~~~~~  346 (363)
                      ..++ +|+.+++++| -.+++++
T Consensus       541 ~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          541 QHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             GGSCTTCCEEECCSCCCCCSSTT
T ss_pred             hhhcccCcEEEccCCCcccCCcc
Confidence            8887 5999999999 3444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.75  E-value=1.8e-17  Score=152.96  Aligned_cols=232  Identities=22%  Similarity=0.282  Sum_probs=179.5

Q ss_pred             cCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCC
Q 038945           10 STPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKN   89 (363)
Q Consensus        10 ~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~   89 (363)
                      ..++++.|+++              +..+..+|..+..+++|++|+++++. +..+|...    +.+++|++|++++| .
T Consensus        79 ~~~~l~~L~L~--------------~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~----~~l~~L~~L~Ls~n-~  138 (328)
T 4fcg_A           79 TQPGRVALELR--------------SVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTM----QQFAGLETLTLARN-P  138 (328)
T ss_dssp             TSTTCCEEEEE--------------SSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCG----GGGTTCSEEEEESC-C
T ss_pred             cccceeEEEcc--------------CCCchhcChhhhhCCCCCEEECCCCC-ccchhHHH----hccCCCCEEECCCC-c
Confidence            45889999999              13344678888889999999999987 87777665    68999999999998 5


Q ss_pred             CcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccc
Q 038945           90 MSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFI  169 (363)
Q Consensus        90 l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~  169 (363)
                      +.. .|.. ++.+++|++|++++|.....++..-.... .......+++|+.|+++++ +++.+                
T Consensus       139 l~~-lp~~-l~~l~~L~~L~L~~n~~~~~~p~~~~~~~-~~~~~~~l~~L~~L~L~~n-~l~~l----------------  198 (328)
T 4fcg_A          139 LRA-LPAS-IASLNRLRELSIRACPELTELPEPLASTD-ASGEHQGLVNLQSLRLEWT-GIRSL----------------  198 (328)
T ss_dssp             CCC-CCGG-GGGCTTCCEEEEEEETTCCCCCSCSEEEC--CCCEEESTTCCEEEEEEE-CCCCC----------------
T ss_pred             ccc-CcHH-HhcCcCCCEEECCCCCCccccChhHhhcc-chhhhccCCCCCEEECcCC-CcCcc----------------
Confidence            663 5655 88999999999999887776654211000 0001224889999999876 33332                


Q ss_pred             cchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhcccc
Q 038945          170 RIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNL  249 (363)
Q Consensus       170 ~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L  249 (363)
                                          +..+..+++|+.|++++|. +..++..+..+++|++|++++|.....+|..  +..+++|
T Consensus       199 --------------------p~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~--~~~l~~L  255 (328)
T 4fcg_A          199 --------------------PASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPI--FGGRAPL  255 (328)
T ss_dssp             --------------------CGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCC--TTCCCCC
T ss_pred             --------------------hHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHH--hcCCCCC
Confidence                                2335667999999999986 4567777888999999999999888877654  6789999


Q ss_pred             CeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeecc
Q 038945          250 ERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ  314 (363)
Q Consensus       250 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~  314 (363)
                      +.|++++|..+..++.        .+..+++|++|++++|+.+..++..  ...+++|+.+.+..
T Consensus       256 ~~L~L~~n~~~~~~p~--------~~~~l~~L~~L~L~~n~~~~~iP~~--l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          256 KRLILKDCSNLLTLPL--------DIHRLTQLEKLDLRGCVNLSRLPSL--IAQLPANCIILVPP  310 (328)
T ss_dssp             CEEECTTCTTCCBCCT--------TGGGCTTCCEEECTTCTTCCCCCGG--GGGSCTTCEEECCG
T ss_pred             CEEECCCCCchhhcch--------hhhcCCCCCEEeCCCCCchhhccHH--HhhccCceEEeCCH
Confidence            9999999987665432        2567999999999999999999887  88899999998753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.74  E-value=2.5e-17  Score=164.21  Aligned_cols=135  Identities=14%  Similarity=0.096  Sum_probs=88.1

Q ss_pred             cccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccc-cCchhhhhhccccCeEeeccCcchhhhhccCcccc
Q 038945          193 NKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLIN-LLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEE  271 (363)
Q Consensus       193 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  271 (363)
                      +..+++|+.|++++|......+..+..+++|++|+++++.--.. ++....+..+++|+.|++++|.. ..+       .
T Consensus       421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~-------~  492 (606)
T 3t6q_A          421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL-SSI-------D  492 (606)
T ss_dssp             TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC-CEE-------C
T ss_pred             hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc-Ccc-------C
Confidence            56677888888887765444455566778888888887743221 22223456778888888888753 222       1


Q ss_pred             ccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCccccc-CCCcCCCCcceeecccC
Q 038945          272 AEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFS-QGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       272 ~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~i~~~  339 (363)
                      ...+..+++|+.|+++++ .+....... ...+++| +|++++| .++.++ ..+..+++|+.+++++|
T Consensus       493 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  557 (606)
T 3t6q_A          493 QHAFTSLKMMNHVDLSHN-RLTSSSIEA-LSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQN  557 (606)
T ss_dssp             TTTTTTCTTCCEEECCSS-CCCGGGGGG-GTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTC
T ss_pred             hhhhccccCCCEEECCCC-ccCcCChhH-hCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCC
Confidence            223556788888888886 444443322 5667788 8888777 444444 34568889999999999

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.74  E-value=9e-17  Score=154.79  Aligned_cols=243  Identities=16%  Similarity=0.158  Sum_probs=177.4

Q ss_pred             hhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCc
Q 038945           37 TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSL  116 (363)
Q Consensus        37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l  116 (363)
                      .+..+|..+.  +++++|+++++. ++.++... +  ..+++|++|+++++ ++....+.. +..+++|++|+++++. +
T Consensus        65 ~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~-~--~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~n~-l  135 (452)
T 3zyi_A           65 GLSEVPQGIP--SNTRYLNLMENN-IQMIQADT-F--RHLHHLEVLQLGRN-SIRQIEVGA-FNGLASLNTLELFDNW-L  135 (452)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSC-CCEECTTT-T--TTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSC-C
T ss_pred             CcCccCCCCC--CCccEEECcCCc-CceECHHH-c--CCCCCCCEEECCCC-ccCCcChhh-ccCcccCCEEECCCCc-C
Confidence            3444555442  689999999987 77754332 1  57999999999998 566655444 8889999999999864 5


Q ss_pred             ceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccC
Q 038945          117 EEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVF  196 (363)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l  196 (363)
                      ..++..         ....+++|+.|+++++. ++.+.                                   ...+..+
T Consensus       136 ~~~~~~---------~~~~l~~L~~L~L~~N~-l~~~~-----------------------------------~~~~~~l  170 (452)
T 3zyi_A          136 TVIPSG---------AFEYLSKLRELWLRNNP-IESIP-----------------------------------SYAFNRV  170 (452)
T ss_dssp             SBCCTT---------TSSSCTTCCEEECCSCC-CCEEC-----------------------------------TTTTTTC
T ss_pred             CccChh---------hhcccCCCCEEECCCCC-cceeC-----------------------------------HhHHhcC
Confidence            544321         13468899999998764 33321                                   1235667


Q ss_pred             CCccEEEeccCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945          197 ANLKSLEISECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC  275 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  275 (363)
                      ++|+.|++++|..+..++. .+..+++|++|+++++ .++.++.   +..+++|+.|+++++.. ..+       ....+
T Consensus       171 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~Ls~N~l-~~~-------~~~~~  238 (452)
T 3zyi_A          171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPN---LTPLVGLEELEMSGNHF-PEI-------RPGSF  238 (452)
T ss_dssp             TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCC---CTTCTTCCEEECTTSCC-SEE-------CGGGG
T ss_pred             CcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccccc---ccccccccEEECcCCcC-ccc-------Ccccc
Confidence            9999999999988888865 4678999999999987 5666654   56889999999999853 222       12235


Q ss_pred             ccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCC-cCCCCcceeecccC-CCCCCcccc
Q 038945          276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE-EDGDDEGCW  348 (363)
Q Consensus       276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~i~~~-~~~~~~~~~  348 (363)
                      ..+++|+.|++.++ .+..+.... +..+++|++|+++++ +++.++... ..+++|+.|++++| -.+++.+.|
T Consensus       239 ~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~  310 (452)
T 3zyi_A          239 HGLSSLKKLWVMNS-QVSLIERNA-FDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILW  310 (452)
T ss_dssp             TTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHH
T ss_pred             cCccCCCEEEeCCC-cCceECHHH-hcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCCcCCCCCchH
Confidence            67899999999986 566665443 667899999999877 778777654 48999999999999 334444443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.74  E-value=2.8e-17  Score=168.46  Aligned_cols=279  Identities=11%  Similarity=0.001  Sum_probs=165.3

Q ss_pred             cCCCceeEEEeeecccceeeeccCCCchhhhhhhcccc-ccccceEecccCcCcc-cccccCcCCCCCCCCccEEEecCC
Q 038945           10 STPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIG-FRDIENIKLSLFPRLK-EIWHNQALPVSFFNNLRHLVLDDC   87 (363)
Q Consensus        10 ~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~L~~L~l~~~~~l~-~~~~~~~l~~~~l~~L~~L~l~~c   87 (363)
                      .+++|++|+++..          .+.   ..+|..+.. +++|++|+++++. +. .++...    +.+++|++|++++|
T Consensus       267 ~l~~L~~L~L~~n----------~l~---~~ip~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~----~~l~~L~~L~L~~n  328 (768)
T 3rgz_A          267 PLKSLQYLSLAEN----------KFT---GEIPDFLSGACDTLTGLDLSGNH-FYGAVPPFF----GSCSLLESLALSSN  328 (768)
T ss_dssp             CCTTCCEEECCSS----------EEE---ESCCCCSCTTCTTCSEEECCSSE-EEECCCGGG----GGCTTCCEEECCSS
T ss_pred             ccCCCCEEECcCC----------ccC---CccCHHHHhhcCcCCEEECcCCc-CCCccchHH----hcCCCccEEECCCC
Confidence            6889999998821          111   133444444 4778888888776 44 333333    46778888888777


Q ss_pred             CCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCC-ccceeecccccccccccCcccchhhhhhh
Q 038945           88 KNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFP-KLFSLRLIDLPKLKRFCNFTGNIIELLEC  166 (363)
Q Consensus        88 ~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~L~~l~~~~~~~L~~l~~  166 (363)
                       ++.+..|...+..+++|++|++++|.-...++..          ...++ +|+.|+++++.--..+......      .
T Consensus       329 -~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~----------l~~l~~~L~~L~Ls~N~l~~~~~~~~~~------~  391 (768)
T 3rgz_A          329 -NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES----------LTNLSASLLTLDLSSNNFSGPILPNLCQ------N  391 (768)
T ss_dssp             -EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT----------HHHHTTTCSEEECCSSEEEEECCTTTTC------S
T ss_pred             -cccCcCCHHHHhcCCCCCEEeCcCCccCccccHH----------HHhhhcCCcEEEccCCCcCCCcChhhhh------c
Confidence             3444456555777888888888776422222211          01222 5666666554211111000000      0


Q ss_pred             ccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhc
Q 038945          167 NFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESL  246 (363)
Q Consensus       167 ~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l  246 (363)
                      .++++. .  +. ....+++...+..+..+++|+.|++++|.....+|..+..+++|+.|++++|.-...+|..  +..+
T Consensus       392 ~~~~L~-~--L~-L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--~~~l  465 (768)
T 3rgz_A          392 PKNTLQ-E--LY-LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE--LMYV  465 (768)
T ss_dssp             TTCCCC-E--EE-CCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG--GGGC
T ss_pred             ccCCcc-E--EE-CCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH--HcCC
Confidence            000000 0  00 0111112223445667788888888888655566667777888888888887544444432  5677


Q ss_pred             cccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCc
Q 038945          247 VNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV  326 (363)
Q Consensus       247 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~  326 (363)
                      ++|+.|++++|.....+        ...+..+++|++|++++|.-...++..  +..+++|++|++++|.-...+|..+.
T Consensus       466 ~~L~~L~L~~N~l~~~~--------p~~l~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~l~  535 (768)
T 3rgz_A          466 KTLETLILDFNDLTGEI--------PSGLSNCTNLNWISLSNNRLTGEIPKW--IGRLENLAILKLSNNSFSGNIPAELG  535 (768)
T ss_dssp             TTCCEEECCSSCCCSCC--------CGGGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred             CCceEEEecCCcccCcC--------CHHHhcCCCCCEEEccCCccCCcCChH--HhcCCCCCEEECCCCcccCcCCHHHc
Confidence            88888888887543222        223556788888888887544345544  66788888888888755557777888


Q ss_pred             CCCCcceeecccC
Q 038945          327 DAPKLNKVKPTEE  339 (363)
Q Consensus       327 ~~~~L~~L~i~~~  339 (363)
                      .+++|+.|++++|
T Consensus       536 ~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          536 DCRSLIWLDLNTN  548 (768)
T ss_dssp             GCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCC
Confidence            8888888888877

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.73  E-value=5.9e-17  Score=166.09  Aligned_cols=84  Identities=12%  Similarity=-0.025  Sum_probs=49.0

Q ss_pred             ccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCC
Q 038945          246 LVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV  325 (363)
Q Consensus       246 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~  325 (363)
                      +++|+.|+++++.....+        +..+..++.|+.|+++++.--..++..  +..+++|+.|+++++.--..+|..+
T Consensus       631 l~~L~~LdLs~N~l~g~i--------p~~l~~l~~L~~L~Ls~N~l~g~ip~~--l~~L~~L~~LdLs~N~l~g~ip~~l  700 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYI--------PKEIGSMPYLFILNLGHNDISGSIPDE--VGDLRGLNILDLSSNKLDGRIPQAM  700 (768)
T ss_dssp             SBCCCEEECCSSCCBSCC--------CGGGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCEECCCGGG
T ss_pred             cccccEEECcCCcccccC--------CHHHhccccCCEEeCcCCccCCCCChH--HhCCCCCCEEECCCCcccCcCChHH
Confidence            345555555555422222        222455666777777665433345544  5666777777776664444666666


Q ss_pred             cCCCCcceeecccC
Q 038945          326 VDAPKLNKVKPTEE  339 (363)
Q Consensus       326 ~~~~~L~~L~i~~~  339 (363)
                      ..+++|+.|++++|
T Consensus       701 ~~l~~L~~L~ls~N  714 (768)
T 3rgz_A          701 SALTMLTEIDLSNN  714 (768)
T ss_dssp             GGCCCCSEEECCSS
T ss_pred             hCCCCCCEEECcCC
Confidence            77777777777766

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.73  E-value=3.1e-17  Score=152.27  Aligned_cols=127  Identities=10%  Similarity=0.161  Sum_probs=86.9

Q ss_pred             cccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccc
Q 038945          193 NKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEA  272 (363)
Q Consensus       193 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  272 (363)
                      +..+++|+.++++++.. ...+. +..+++|++|++++| .++.++.   +..+++|+.|++++|. +..+         
T Consensus       195 ~~~l~~L~~L~l~~n~l-~~~~~-~~~~~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~---------  258 (347)
T 4fmz_A          195 LASLTSLHYFTAYVNQI-TDITP-VANMTRLNSLKIGNN-KITDLSP---LANLSQLTWLEIGTNQ-ISDI---------  258 (347)
T ss_dssp             GGGCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCC---------
T ss_pred             ccCCCccceeecccCCC-CCCch-hhcCCcCCEEEccCC-ccCCCcc---hhcCCCCCEEECCCCc-cCCC---------
Confidence            55566777777766642 22222 456778888888776 3444432   5677888888888774 2221         


Q ss_pred             cccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          273 EDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       273 ~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      +.+..+++|++|++++| .++.++.   ...+++|++|++++|.--...+..+..+++|+.|++++|
T Consensus       259 ~~~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  321 (347)
T 4fmz_A          259 NAVKDLTKLKMLNVGSN-QISDISV---LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN  321 (347)
T ss_dssp             GGGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred             hhHhcCCCcCEEEccCC-ccCCChh---hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence            23556889999999987 5565532   667899999999888543344455678999999999998

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.72  E-value=5.7e-17  Score=148.65  Aligned_cols=233  Identities=15%  Similarity=0.125  Sum_probs=160.0

Q ss_pred             hhhhccccccccceEecccCcCcc-cccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcce
Q 038945           40 KCYIEMIGFRDIENIKLSLFPRLK-EIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEE  118 (363)
Q Consensus        40 ~l~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~  118 (363)
                      .+|..+..+++|++|+++++.++. .+|...    ..+++|++|+++++ ++....|.. +..+++|++|+++++.-...
T Consensus        67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l----~~l~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~  140 (313)
T 1ogq_A           67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAI----AKLTQLHYLYITHT-NVSGAIPDF-LSQIKTLVTLDFSYNALSGT  140 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGG----GGCTTCSEEEEEEE-CCEEECCGG-GGGCTTCCEEECCSSEEESC
T ss_pred             ccChhHhCCCCCCeeeCCCCCcccccCChhH----hcCCCCCEEECcCC-eeCCcCCHH-HhCCCCCCEEeCCCCccCCc
Confidence            356677778889999998533344 444444    57888999999887 455456655 78888999999887642212


Q ss_pred             ecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCC-
Q 038945          119 VLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFA-  197 (363)
Q Consensus       119 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~-  197 (363)
                      ++..          ...+++|+.|+++++. +..                                   ..+..+..++ 
T Consensus       141 ~p~~----------~~~l~~L~~L~L~~N~-l~~-----------------------------------~~p~~l~~l~~  174 (313)
T 1ogq_A          141 LPPS----------ISSLPNLVGITFDGNR-ISG-----------------------------------AIPDSYGSFSK  174 (313)
T ss_dssp             CCGG----------GGGCTTCCEEECCSSC-CEE-----------------------------------ECCGGGGCCCT
T ss_pred             CChH----------HhcCCCCCeEECcCCc-ccC-----------------------------------cCCHHHhhhhh
Confidence            2211          2357888888888763 221                                   1123345556 


Q ss_pred             CccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccc
Q 038945          198 NLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIV  277 (363)
Q Consensus       198 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  277 (363)
                      .|+.|+++++......+..+..+. |+.|+++++. ++.... ..+..+++|+.|+++++......         ..+..
T Consensus       175 ~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---------~~~~~  242 (313)
T 1ogq_A          175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM-LEGDAS-VLFGSDKNTQKIHLAKNSLAFDL---------GKVGL  242 (313)
T ss_dssp             TCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE-EEECCG-GGCCTTSCCSEEECCSSEECCBG---------GGCCC
T ss_pred             cCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc-ccCcCC-HHHhcCCCCCEEECCCCceeeec---------Ccccc
Confidence            899999999876556666666676 9999999874 443322 33678899999999988642211         11456


Q ss_pred             ccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          278 FRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       278 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      +++|++|+++++.--..++..  +..+++|++|+++++.--..+|.. ..+++|+.+++.+|
T Consensus       243 l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N  301 (313)
T 1ogq_A          243 SKNLNGLDLRNNRIYGTLPQG--LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN  301 (313)
T ss_dssp             CTTCCEEECCSSCCEECCCGG--GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred             cCCCCEEECcCCcccCcCChH--HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence            789999999987433355544  677899999999887433356655 88999999999998

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.72  E-value=2.8e-16  Score=156.69  Aligned_cols=259  Identities=15%  Similarity=0.106  Sum_probs=159.4

Q ss_pred             cccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccc
Q 038945           45 MIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEE  124 (363)
Q Consensus        45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~  124 (363)
                      +..+++|++|+++++. ++++|...    ..+++|++|++++| .+....|.. +..+++|++|+++++.....++..  
T Consensus       274 ~~~l~~L~~L~l~~n~-l~~lp~~l----~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~--  344 (606)
T 3t6q_A          274 FHCFSGLQELDLTATH-LSELPSGL----VGLSTLKKLVLSAN-KFENLCQIS-ASNFPSLTHLSIKGNTKRLELGTG--  344 (606)
T ss_dssp             TTTCTTCSEEECTTSC-CSCCCSSC----CSCTTCCEEECTTC-CCSBGGGGC-GGGCTTCSEEECCSCSSCCBCCSS--
T ss_pred             hccccCCCEEeccCCc-cCCCChhh----cccccCCEEECccC-CcCcCchhh-hhccCcCCEEECCCCCcccccchh--
Confidence            5567888888888886 77766655    57888888888887 455444433 777888888888877533233211  


Q ss_pred             ccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEe
Q 038945          125 LNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEI  204 (363)
Q Consensus       125 ~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l  204 (363)
                             ....+++|+.|+++++. +........ .+    ..++++. .  +.+ ...++....+..+..+++|+.|++
T Consensus       345 -------~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~----~~l~~L~-~--L~l-~~n~l~~~~~~~~~~l~~L~~L~l  407 (606)
T 3t6q_A          345 -------CLENLENLRELDLSHDD-IETSDCCNL-QL----RNLSHLQ-S--LNL-SYNEPLSLKTEAFKECPQLELLDL  407 (606)
T ss_dssp             -------TTTTCTTCCEEECCSSC-CCEEEESTT-TT----TTCTTCC-E--EEC-CSCSCEEECTTTTTTCTTCSEEEC
T ss_pred             -------hhhccCcCCEEECCCCc-cccccCcch-hc----ccCCCCC-E--EEC-CCCcCCcCCHHHhcCCccCCeEEC
Confidence                   12356777777777653 222110000 00    0111111 0  000 111122222445677788999999


Q ss_pred             ccCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccce
Q 038945          205 SECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEY  283 (363)
Q Consensus       205 ~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~  283 (363)
                      +++......+. .+..+++|+.|++++|. +...+. ..+..+++|+.|++++|......+.     ....+..+++|+.
T Consensus       408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~~~~l~~L~~  480 (606)
T 3t6q_A          408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSE-QLFDGLPALQHLNLQGNHFPKGNIQ-----KTNSLQTLGRLEI  480 (606)
T ss_dssp             TTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCT-TTTTTCTTCCEEECTTCBCGGGEEC-----SSCGGGGCTTCCE
T ss_pred             CCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCH-HHHhCCCCCCEEECCCCCCCccccc-----cchhhccCCCccE
Confidence            88864433333 36678899999998874 333322 2356788999999988864321110     1123567889999


Q ss_pred             ecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          284 LGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       284 L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      |++++| .++.+.... +..+++|++|++++|.--...|..+..+++| .|++++|
T Consensus       481 L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N  533 (606)
T 3t6q_A          481 LVLSFC-DLSSIDQHA-FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN  533 (606)
T ss_dssp             EECTTS-CCCEECTTT-TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred             EECCCC-ccCccChhh-hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence            999987 455554332 6678899999998874444455677788999 9999988

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.72  E-value=3.2e-16  Score=151.77  Aligned_cols=255  Identities=16%  Similarity=0.132  Sum_probs=153.1

Q ss_pred             hccccccccceEecccCcCccccc-ccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecc
Q 038945           43 IEMIGFRDIENIKLSLFPRLKEIW-HNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLH  121 (363)
Q Consensus        43 ~~~~~~~~L~~L~l~~~~~l~~~~-~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~  121 (363)
                      ..+..+++|++|+++++. ++.+. ...    ..+++|++|+++++ ++.. .|...+..+++|++|+++++. +..+..
T Consensus        50 ~~~~~l~~L~~L~L~~n~-i~~~~~~~~----~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~-i~~~~~  121 (477)
T 2id5_A           50 DEFASFPHLEELELNENI-VSAVEPGAF----NNLFNLRTLGLRSN-RLKL-IPLGVFTGLSNLTKLDISENK-IVILLD  121 (477)
T ss_dssp             TTTTTCTTCCEEECTTSC-CCEECTTTT----TTCTTCCEEECCSS-CCCS-CCTTSSTTCTTCCEEECTTSC-CCEECT
T ss_pred             hHccCCCCCCEEECCCCc-cCEeChhhh----hCCccCCEEECCCC-cCCc-cCcccccCCCCCCEEECCCCc-cccCCh
Confidence            345566777777777765 55542 222    46777777777776 3454 343446667777777777654 333211


Q ss_pred             cccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccE
Q 038945          122 LEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKS  201 (363)
Q Consensus       122 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~  201 (363)
                               .....+++|+.|+++++. +..+....-       ..++++. .|  .+ ...+++......+..+++|+.
T Consensus       122 ---------~~~~~l~~L~~L~l~~n~-l~~~~~~~~-------~~l~~L~-~L--~l-~~n~l~~~~~~~l~~l~~L~~  180 (477)
T 2id5_A          122 ---------YMFQDLYNLKSLEVGDND-LVYISHRAF-------SGLNSLE-QL--TL-EKCNLTSIPTEALSHLHGLIV  180 (477)
T ss_dssp             ---------TTTTTCTTCCEEEECCTT-CCEECTTSS-------TTCTTCC-EE--EE-ESCCCSSCCHHHHTTCTTCCE
T ss_pred             ---------hHccccccCCEEECCCCc-cceeChhhc-------cCCCCCC-EE--EC-CCCcCcccChhHhcccCCCcE
Confidence                     012346666666666542 222111000       0001111 00  00 000111111223566788888


Q ss_pred             EEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccccccc
Q 038945          202 LEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKL  281 (363)
Q Consensus       202 L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L  281 (363)
                      |+++++..-...+..+..+++|+.|++++|+.+..++..  .....+|+.|++++|. ++.+.       ...+..+++|
T Consensus       181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~-l~~~~-------~~~~~~l~~L  250 (477)
T 2id5_A          181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN--CLYGLNLTSLSITHCN-LTAVP-------YLAVRHLVYL  250 (477)
T ss_dssp             EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT--TTTTCCCSEEEEESSC-CCSCC-------HHHHTTCTTC
T ss_pred             EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc--cccCccccEEECcCCc-ccccC-------HHHhcCcccc
Confidence            888887644433445677888999999888877777654  2334589999998874 33221       1124568999


Q ss_pred             ceecccccccccccCCCCcccCCCCccEEeeccCCCcccc-cCCCcCCCCcceeecccC
Q 038945          282 EYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIF-SQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       282 ~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~i~~~  339 (363)
                      +.|+++++ .++.++... +..+++|++|+++++ .++.+ +..+..+++|+.|++++|
T Consensus       251 ~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N  306 (477)
T 2id5_A          251 RFLNLSYN-PISTIEGSM-LHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN  306 (477)
T ss_dssp             CEEECCSS-CCCEECTTS-CTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS
T ss_pred             CeeECCCC-cCCccChhh-ccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC
Confidence            99999986 466665543 667899999999877 55544 556779999999999998

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.71  E-value=3.5e-16  Score=155.98  Aligned_cols=250  Identities=15%  Similarity=0.098  Sum_probs=171.4

Q ss_pred             cccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccc
Q 038945           45 MIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEE  124 (363)
Q Consensus        45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~  124 (363)
                      +..+++|++|+++++. ++.++ ..    ..+++|++|++++|.. .. .| . + .+++|++|+++++..+..+.    
T Consensus       281 ~~~l~~L~~L~l~~~~-~~~l~-~l----~~~~~L~~L~l~~n~l-~~-lp-~-~-~l~~L~~L~l~~n~~~~~~~----  345 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVS-IKYLE-DV----PKHFKWQSLSIIRCQL-KQ-FP-T-L-DLPFLKSLTLTMNKGSISFK----  345 (606)
T ss_dssp             CGGGTTCSEEEEESCC-CCCCC-CC----CTTCCCSEEEEESCCC-SS-CC-C-C-CCSSCCEEEEESCSSCEECC----
T ss_pred             cccCCCCCEEEecCcc-chhhh-hc----cccccCCEEEcccccC-cc-cc-c-C-CCCccceeeccCCcCccchh----
Confidence            6678999999999997 77766 33    4789999999999954 44 55 3 5 89999999999986555432    


Q ss_pred             ccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEe
Q 038945          125 LNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEI  204 (363)
Q Consensus       125 ~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l  204 (363)
                              ...+++|+.|+++++. +.......     .....++++. .|  .+.. ..+. ..+..+..+++|+.|++
T Consensus       346 --------~~~l~~L~~L~ls~n~-l~~~~~~~-----~~~~~~~~L~-~L--~L~~-n~l~-~~~~~~~~l~~L~~L~l  406 (606)
T 3vq2_A          346 --------KVALPSLSYLDLSRNA-LSFSGCCS-----YSDLGTNSLR-HL--DLSF-NGAI-IMSANFMGLEELQHLDF  406 (606)
T ss_dssp             --------CCCCTTCCEEECCSSC-EEEEEECC-----HHHHCCSCCC-EE--ECCS-CSEE-EECCCCTTCTTCCEEEC
T ss_pred             --------hccCCCCCEEECcCCc-cCCCcchh-----hhhccCCccc-Ee--ECCC-Cccc-cchhhccCCCCCCeeEC
Confidence                    3478999999998763 22210000     0001122222 00  0111 1111 12356777899999999


Q ss_pred             ccCcCccccc-ccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccce
Q 038945          205 SECSQLQKLV-PASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEY  283 (363)
Q Consensus       205 ~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~  283 (363)
                      +++......+ ..+..+++|++|++++|......+.  .+..+++|+.|++++|.....+       ....+..+++|+.
T Consensus       407 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~~l~~L~~  477 (606)
T 3vq2_A          407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG--IFLGLTSLNTLKMAGNSFKDNT-------LSNVFANTTNLTF  477 (606)
T ss_dssp             TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT--TTTTCTTCCEEECTTCEEGGGE-------ECSCCTTCTTCCE
T ss_pred             CCCccCCccChhhhhccccCCEEECcCCCCCccchh--hhcCCCCCCEEECCCCcCCCcc-------hHHhhccCCCCCE
Confidence            9887544444 4567889999999998864443332  3678899999999998643322       1223567899999


Q ss_pred             ecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          284 LGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       284 L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      |++++| .++...... +..+++|++|++++|.-....|..+..+++|+.|++++|
T Consensus       478 L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  531 (606)
T 3vq2_A          478 LDLSKC-QLEQISWGV-FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN  531 (606)
T ss_dssp             EECTTS-CCCEECTTT-TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred             EECCCC-cCCccChhh-hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence            999997 555554432 677899999999888444444778889999999999999

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.71  E-value=2.9e-16  Score=148.17  Aligned_cols=109  Identities=18%  Similarity=0.230  Sum_probs=64.4

Q ss_pred             ccCCCceeEEEeeecccceeeeccCCCchhhhhhhc-cccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCC
Q 038945            9 LSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIE-MIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDC   87 (363)
Q Consensus         9 ~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c   87 (363)
                      ..+++++.+.+..              ..+..+|.. +..+++|++|+++++. ++.++... +  ..+++|++|++++|
T Consensus        42 ~~l~~l~~l~l~~--------------~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~-~--~~l~~L~~L~L~~n  103 (390)
T 3o6n_A           42 ITLNNQKIVTFKN--------------STMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYA-F--AYAHTIQKLYMGFN  103 (390)
T ss_dssp             GGGCCCSEEEEES--------------CEESEECTHHHHHCCCCSEEECTTSC-CCEECTTT-T--TTCTTCCEEECCSS
T ss_pred             cccCCceEEEecC--------------CchhhCChhHhcccccCcEEECCCCc-ccccChhh-c--cCCCCcCEEECCCC
Confidence            3567777777771              233344443 3456778888888776 66654322 1  46777888888776


Q ss_pred             CCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccc
Q 038945           88 KNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDL  147 (363)
Q Consensus        88 ~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  147 (363)
                       .+....|. .++.+++|++|+++++. +..++..         ....+++|+.|+++++
T Consensus       104 -~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~l~~~---------~~~~l~~L~~L~L~~n  151 (390)
T 3o6n_A          104 -AIRYLPPH-VFQNVPLLTVLVLERND-LSSLPRG---------IFHNTPKLTTLSMSNN  151 (390)
T ss_dssp             -CCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTT---------TTTTCTTCCEEECCSS
T ss_pred             -CCCcCCHH-HhcCCCCCCEEECCCCc-cCcCCHH---------HhcCCCCCcEEECCCC
Confidence             45543343 36777778888877753 4444321         0124566666666654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.71  E-value=1.2e-16  Score=156.41  Aligned_cols=141  Identities=13%  Similarity=0.147  Sum_probs=92.0

Q ss_pred             ccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCc-hhhhhhccccCeEeeccCcchhhhhccC--ccc
Q 038945          194 KVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLT-LSTSESLVNLERMKMSDCKMMEEIIQSQ--VGE  270 (363)
Q Consensus       194 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~--~~~  270 (363)
                      ..+++|+.|+++++......+..+..+++|+.|+++++. ++.++. ...+..+++|+.|++++|.....++...  ...
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence            466778888888776555456666777888888887763 333221 1235567777777777765322122110  000


Q ss_pred             c----------c--cccccc-cccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC-CcCCCCcceeec
Q 038945          271 E----------A--EDCIVF-RKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKP  336 (363)
Q Consensus       271 ~----------~--~~~~~l-~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~i  336 (363)
                      .          .  .....+ ++|+.|++++| .++.++..  ...+++|++|++++| +++.+|.+ +..+++|+.|++
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l  475 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQ--VVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWL  475 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGG--GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchh--hhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEEC
Confidence            0          0  001112 57888888876 56666665  568999999999887 78888887 668999999999


Q ss_pred             ccC
Q 038945          337 TEE  339 (363)
Q Consensus       337 ~~~  339 (363)
                      ++|
T Consensus       476 ~~N  478 (520)
T 2z7x_B          476 HTN  478 (520)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            999

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.71  E-value=9.1e-17  Score=149.67  Aligned_cols=236  Identities=15%  Similarity=0.145  Sum_probs=141.7

Q ss_pred             ccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccc
Q 038945           44 EMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLE  123 (363)
Q Consensus        44 ~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~  123 (363)
                      .+..+++|++|+++++. ++.++...   ...+++|++|+++++ ++.. .+...++.+++|++|+++++. +..++.. 
T Consensus        71 ~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~l~~~-  142 (353)
T 2z80_A           71 DLQRCVNLQALVLTSNG-INTIEEDS---FSSLGSLEHLDLSYN-YLSN-LSSSWFKPLSSLTFLNLLGNP-YKTLGET-  142 (353)
T ss_dssp             TTTTCTTCCEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCSS-CCHHHHTTCTTCSEEECTTCC-CSSSCSS-
T ss_pred             HhccCCCCCEEECCCCc-cCccCHhh---cCCCCCCCEEECCCC-cCCc-CCHhHhCCCccCCEEECCCCC-CcccCch-
Confidence            34556677777777664 55543221   135667777777666 3443 344446667777777776653 3333210 


Q ss_pred             cccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEE
Q 038945          124 ELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLE  203 (363)
Q Consensus       124 ~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~  203 (363)
                             .....+++|+.|+++++..+..+.                                   ...+..+++|+.|+
T Consensus       143 -------~~~~~l~~L~~L~l~~n~~~~~~~-----------------------------------~~~~~~l~~L~~L~  180 (353)
T 2z80_A          143 -------SLFSHLTKLQILRVGNMDTFTKIQ-----------------------------------RKDFAGLTFLEELE  180 (353)
T ss_dssp             -------CSCTTCTTCCEEEEEESSSCCEEC-----------------------------------TTTTTTCCEEEEEE
T ss_pred             -------hhhccCCCCcEEECCCCccccccC-----------------------------------HHHccCCCCCCEEE
Confidence                   012356677777776664444321                                   22345668888888


Q ss_pred             eccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccce
Q 038945          204 ISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEY  283 (363)
Q Consensus       204 l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~  283 (363)
                      ++++......+..+..+++|++|+++++. ++.++. .+...+++|+.|+++++.. ......    ........+.++.
T Consensus       181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~~~~L~~L~L~~n~l-~~~~~~----~l~~~~~~~~l~~  253 (353)
T 2z80_A          181 IDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLE-IFVDVTSSVECLELRDTDL-DTFHFS----ELSTGETNSLIKK  253 (353)
T ss_dssp             EEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHH-HHHHHTTTEEEEEEESCBC-TTCCCC----------CCCCCCE
T ss_pred             CCCCCcCccCHHHHhccccCCeecCCCCc-cccchh-hhhhhcccccEEECCCCcc-cccccc----ccccccccchhhc
Confidence            88886544446667778888888888764 455442 2345678888888888753 222111    1111122344555


Q ss_pred             ecccccc----cccccCCCCcccCCCCccEEeeccCCCcccccCCC-cCCCCcceeecccC
Q 038945          284 LGLDCLP----SLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE  339 (363)
Q Consensus       284 L~l~~c~----~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~i~~~  339 (363)
                      +++.++.    .+..++..  ...+++|++|++++| +++.+|.++ ..+++|+.|++++|
T Consensus       254 l~L~~~~l~~~~l~~l~~~--l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N  311 (353)
T 2z80_A          254 FTFRNVKITDESLFQVMKL--LNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTN  311 (353)
T ss_dssp             EEEESCBCCHHHHHHHHHH--HHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cccccccccCcchhhhHHH--HhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCC
Confidence            5555431    12223332  566899999999877 788899886 69999999999999

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.70  E-value=6.5e-16  Score=142.47  Aligned_cols=251  Identities=14%  Similarity=0.155  Sum_probs=157.7

Q ss_pred             hhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcce
Q 038945           39 QKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEE  118 (363)
Q Consensus        39 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~  118 (363)
                      ..+|..+  .+.+++|+++++. ++.++... +  ..+++|++|++++| ++....|.. ++.+++|++|+++++. +..
T Consensus        44 ~~lp~~~--~~~l~~L~L~~n~-i~~~~~~~-~--~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~  114 (330)
T 1xku_A           44 EKVPKDL--PPDTALLDLQNNK-ITEIKDGD-F--KNLKNLHTLILINN-KISKISPGA-FAPLVKLERLYLSKNQ-LKE  114 (330)
T ss_dssp             CSCCCSC--CTTCCEEECCSSC-CCCBCTTT-T--TTCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSSC-CSB
T ss_pred             cccCccC--CCCCeEEECCCCc-CCEeChhh-h--ccCCCCCEEECCCC-cCCeeCHHH-hcCCCCCCEEECCCCc-CCc
Confidence            3444433  2678899998886 77765432 1  47889999999887 566555554 7888999999998764 554


Q ss_pred             ecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhh--hhcccccccC
Q 038945          119 VLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLL--KENAESNKVF  196 (363)
Q Consensus       119 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~--~~~~~~l~~l  196 (363)
                      ++.            ..+++|+.|+++++. +..+....   +    ..++++. .|.  + ....+.  ......+..+
T Consensus       115 l~~------------~~~~~L~~L~l~~n~-l~~~~~~~---~----~~l~~L~-~L~--l-~~n~l~~~~~~~~~~~~l  170 (330)
T 1xku_A          115 LPE------------KMPKTLQELRVHENE-ITKVRKSV---F----NGLNQMI-VVE--L-GTNPLKSSGIENGAFQGM  170 (330)
T ss_dssp             CCS------------SCCTTCCEEECCSSC-CCBBCHHH---H----TTCTTCC-EEE--C-CSSCCCGGGBCTTGGGGC
T ss_pred             cCh------------hhcccccEEECCCCc-ccccCHhH---h----cCCcccc-EEE--C-CCCcCCccCcChhhccCC
Confidence            432            123677777776652 22211000   0    0111111 000  0 000111  1123456777


Q ss_pred             CCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccc
Q 038945          197 ANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCI  276 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  276 (363)
                      ++|+.|+++++. +..++...  +++|++|+++++. ++.++. ..+..+++|+.|+++++.. ..+       ....+.
T Consensus       171 ~~L~~L~l~~n~-l~~l~~~~--~~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~l-~~~-------~~~~~~  237 (330)
T 1xku_A          171 KKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGNK-ITKVDA-ASLKGLNNLAKLGLSFNSI-SAV-------DNGSLA  237 (330)
T ss_dssp             TTCCEEECCSSC-CCSCCSSC--CTTCSEEECTTSC-CCEECT-GGGTTCTTCCEEECCSSCC-CEE-------CTTTGG
T ss_pred             CCcCEEECCCCc-cccCCccc--cccCCEEECCCCc-CCccCH-HHhcCCCCCCEEECCCCcC-cee-------Chhhcc
Confidence            899999998875 44555443  3889999998874 555433 2366889999999998753 222       112355


Q ss_pred             cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCc-------CCCCcceeecccC
Q 038945          277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV-------DAPKLNKVKPTEE  339 (363)
Q Consensus       277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-------~~~~L~~L~i~~~  339 (363)
                      .+++|++|+++++ .++.++..  ...+++|++|+++++ .++.++....       ..++++.+++.+|
T Consensus       238 ~l~~L~~L~L~~N-~l~~lp~~--l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N  303 (330)
T 1xku_A          238 NTPHLRELHLNNN-KLVKVPGG--LADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSN  303 (330)
T ss_dssp             GSTTCCEEECCSS-CCSSCCTT--TTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred             CCCCCCEEECCCC-cCccCChh--hccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecC
Confidence            6889999999987 56677665  677899999999776 5666654332       3478899999999

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=9.3e-17  Score=165.32  Aligned_cols=129  Identities=16%  Similarity=0.116  Sum_probs=76.4

Q ss_pred             cccccccCCCceeEEEeeecccc-----eeeeccCCCchhhhhhhccc--cccccceEecccCcCcccccccCcCCCCCC
Q 038945            4 FSLGILSTPKLHKVQVTVKEEGE-----LYHREGNLNSTIQKCYIEMI--GFRDIENIKLSLFPRLKEIWHNQALPVSFF   76 (363)
Q Consensus         4 ~~~~~~~~~~L~~l~~~~~~~~~-----~~~~~~~l~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l   76 (363)
                      ++.++..+++|+.|+++......     .|.. ...+..-..+|..+.  .+++|++|++++|.-...+|...    ..+
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~-~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l----~~L  514 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWED-ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL----YDL  514 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC-TTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG----GGC
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccc-cccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH----hCC
Confidence            56678889999999998321111     0000 000000113677776  78888888888886455555444    578


Q ss_pred             CCccEEEecCCCCCcc-cCchhHHhhcC-------CCCEEEEccCCCcceecccccccccccccCCCCCccceeecccc
Q 038945           77 NNLRHLVLDDCKNMSS-AIPANLIRCLN-------NLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDL  147 (363)
Q Consensus        77 ~~L~~L~l~~c~~l~~-~~p~~~l~~l~-------~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  147 (363)
                      ++|++|++++|..+.+ ..|.. ++.++       +|++|++++|. +..++....        ...+++|+.|+++++
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~--------l~~L~~L~~L~Ls~N  583 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNN-LEEFPASAS--------LQKMVKLGLLDCVHN  583 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHH--------HTTCTTCCEEECTTS
T ss_pred             CCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCc-CCccCChhh--------hhcCCCCCEEECCCC
Confidence            8888888888754664 45554 44444       88888888764 445443000        124556666666554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.70  E-value=5.7e-17  Score=162.75  Aligned_cols=271  Identities=10%  Similarity=0.066  Sum_probs=172.7

Q ss_pred             hhhhhhhccccccccceEecccCcCccc------------------ccccCcCCCC--CCCCccEEEecCCCCCcccCch
Q 038945           37 TIQKCYIEMIGFRDIENIKLSLFPRLKE------------------IWHNQALPVS--FFNNLRHLVLDDCKNMSSAIPA   96 (363)
Q Consensus        37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~------------------~~~~~~l~~~--~l~~L~~L~l~~c~~l~~~~p~   96 (363)
                      .+..+|..+..+++|++|+++++. ++.                  +|...    +  .+++|++|++++|. +.+..|.
T Consensus       194 ~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l----~~~~l~~L~~L~L~~n~-l~~~~p~  267 (636)
T 4eco_A          194 NITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDL----KWDNLKDLTDVEVYNCP-NLTKLPT  267 (636)
T ss_dssp             EEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCC----CGGGCTTCCEEEEECCT-TCSSCCT
T ss_pred             CCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhh----hhcccCCCCEEEecCCc-CCccChH
Confidence            455588889999999999999998 777                  66666    5  79999999999984 4555675


Q ss_pred             hHHhhcCCCCEEEEccCCCcc--eeccccc-ccccccccCCCCCccceeecccccccccccC--cccchhhhhhhccccc
Q 038945           97 NLIRCLNNLASLEVRNCDSLE--EVLHLEE-LNADKEHLCPLFPKLFSLRLIDLPKLKRFCN--FTGNIIELLECNFIRI  171 (363)
Q Consensus        97 ~~l~~l~~L~~L~l~~~~~l~--~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~--~~~~~L~~l~~~~~~l  171 (363)
                      . ++++++|++|+++++..+.  .++..-+ ..     ....+++|+.|+++++. ++.++.  ...        .++++
T Consensus       268 ~-l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~-----~~~~l~~L~~L~L~~n~-l~~ip~~~~l~--------~l~~L  332 (636)
T 4eco_A          268 F-LKALPEMQLINVACNRGISGEQLKDDWQALA-----DAPVGEKIQIIYIGYNN-LKTFPVETSLQ--------KMKKL  332 (636)
T ss_dssp             T-TTTCSSCCEEECTTCTTSCHHHHHHHHHHHH-----HSGGGGTCCEEECCSSC-CSSCCCHHHHT--------TCTTC
T ss_pred             H-HhcCCCCCEEECcCCCCCccccchHHHHhhh-----ccccCCCCCEEECCCCc-CCccCchhhhc--------cCCCC
Confidence            5 8899999999999986343  2332110 00     01235788888888763 333322  110        01111


Q ss_pred             hhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCC-CCEEeeccCcCccccCchhhhhhccccC
Q 038945          172 KSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLEN-LATLEVSKCHGLINLLTLSTSESLVNLE  250 (363)
Q Consensus       172 ~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~-L~~L~l~~c~~l~~~~~~~~~~~l~~L~  250 (363)
                      . .  +. ....++....+ .+..+++|+.|+++++. +..+|..+..+++ |++|+++++. ++.+|.......+++|+
T Consensus       333 ~-~--L~-L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~  405 (636)
T 4eco_A          333 G-M--LE-CLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMS  405 (636)
T ss_dssp             C-E--EE-CCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEE
T ss_pred             C-E--Ee-CcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccC
Confidence            1 0  00 01111221222 66777888888888875 4477777778888 9999998874 55666431122345889


Q ss_pred             eEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCC--
Q 038945          251 RMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDA--  328 (363)
Q Consensus       251 ~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~--  328 (363)
                      .|++++|.....++.. -.........+++|++|+++++ .++.++... ...+++|++|++++| .++.+|......  
T Consensus       406 ~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~  481 (636)
T 4eco_A          406 AIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNN-QISKFPKEL-FSTGSPLSSINLMGN-MLTEIPKNSLKDEN  481 (636)
T ss_dssp             EEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSS-CCCSCCTHH-HHTTCCCSEEECCSS-CCSBCCSSSSEETT
T ss_pred             EEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCC-ccCcCCHHH-HccCCCCCEEECCCC-CCCCcCHHHhcccc
Confidence            9998887643322111 0000000114668999999986 566666541 334899999999776 666788766532  


Q ss_pred             ------CCcceeecccC
Q 038945          329 ------PKLNKVKPTEE  339 (363)
Q Consensus       329 ------~~L~~L~i~~~  339 (363)
                            ++|+.|++++|
T Consensus       482 ~~~~~l~~L~~L~Ls~N  498 (636)
T 4eco_A          482 ENFKNTYLLTSIDLRFN  498 (636)
T ss_dssp             EECTTGGGCCEEECCSS
T ss_pred             ccccccCCccEEECcCC
Confidence                  28999999998

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.70  E-value=4.8e-16  Score=146.68  Aligned_cols=278  Identities=13%  Similarity=0.102  Sum_probs=157.7

Q ss_pred             cccCCCceeEEEeeecccceeeeccCCCchhhhhh-hccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecC
Q 038945            8 ILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCY-IEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDD   86 (363)
Q Consensus         8 ~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~   86 (363)
                      +..+++|++|+++.          .    .+..++ ..+..+++|++|+++++. ++.++...   ...+++|++|++++
T Consensus        65 ~~~l~~L~~L~L~~----------n----~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~  126 (390)
T 3o6n_A           65 LDSFRQVELLNLND----------L----QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV---FQNVPLLTVLVLER  126 (390)
T ss_dssp             HHHCCCCSEEECTT----------S----CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCS
T ss_pred             hcccccCcEEECCC----------C----cccccChhhccCCCCcCEEECCCCC-CCcCCHHH---hcCCCCCCEEECCC
Confidence            36688999999882          1    122222 245567888888888876 66644332   14678888888888


Q ss_pred             CCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhh-
Q 038945           87 CKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLE-  165 (363)
Q Consensus        87 c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~-  165 (363)
                      | ++.. .|..+++.+++|++|+++++. +..++..         ....+++|+.|+++++. ++.+....-+.+..+. 
T Consensus       127 n-~l~~-l~~~~~~~l~~L~~L~L~~n~-l~~~~~~---------~~~~l~~L~~L~l~~n~-l~~~~~~~l~~L~~L~l  193 (390)
T 3o6n_A          127 N-DLSS-LPRGIFHNTPKLTTLSMSNNN-LERIEDD---------TFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANV  193 (390)
T ss_dssp             S-CCCC-CCTTTTTTCTTCCEEECCSSC-CCBCCTT---------TTSSCTTCCEEECCSSC-CSBCCGGGCTTCSEEEC
T ss_pred             C-ccCc-CCHHHhcCCCCCcEEECCCCc-cCccChh---------hccCCCCCCEEECCCCc-CCccccccccccceeec
Confidence            7 4554 555546778888888888764 3333210         12356677777776542 2222111111111111 


Q ss_pred             --hccccch--hhHH-HHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCch
Q 038945          166 --CNFIRIK--SNLM-TRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTL  240 (363)
Q Consensus       166 --~~~~~l~--~~L~-l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~  240 (363)
                        .....+.  +.++ +.+ ...++..  . ....+++|+.|+++++.. ... ..+..+++|++|+++++. ++..+. 
T Consensus       194 ~~n~l~~~~~~~~L~~L~l-~~n~l~~--~-~~~~~~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~Ls~n~-l~~~~~-  265 (390)
T 3o6n_A          194 SYNLLSTLAIPIAVEELDA-SHNSINV--V-RGPVNVELTILKLQHNNL-TDT-AWLLNYPGLVEVDLSYNE-LEKIMY-  265 (390)
T ss_dssp             CSSCCSEEECCSSCSEEEC-CSSCCCE--E-ECCCCSSCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSC-CCEEES-
T ss_pred             ccccccccCCCCcceEEEC-CCCeeee--c-cccccccccEEECCCCCC-ccc-HHHcCCCCccEEECCCCc-CCCcCh-
Confidence              0000000  0000 000 0000000  0 011235677777777653 232 345677888888888763 444322 


Q ss_pred             hhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCccc
Q 038945          241 STSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI  320 (363)
Q Consensus       241 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~  320 (363)
                      ..+..+++|+.|+++++. ++.+..        ....+++|+.|+++++ .++.++..  ...+++|++|++++| .++.
T Consensus       266 ~~~~~l~~L~~L~L~~n~-l~~~~~--------~~~~l~~L~~L~L~~n-~l~~~~~~--~~~l~~L~~L~L~~N-~i~~  332 (390)
T 3o6n_A          266 HPFVKMQRLERLYISNNR-LVALNL--------YGQPIPTLKVLDLSHN-HLLHVERN--QPQFDRLENLYLDHN-SIVT  332 (390)
T ss_dssp             GGGTTCSSCCEEECCSSC-CCEEEC--------SSSCCTTCCEEECCSS-CCCCCGGG--HHHHTTCSEEECCSS-CCCC
T ss_pred             hHccccccCCEEECCCCc-CcccCc--------ccCCCCCCCEEECCCC-cceecCcc--ccccCcCCEEECCCC-ccce
Confidence            235677888888888764 332211        1245788888888886 56666554  566788999998776 4665


Q ss_pred             ccCCCcCCCCcceeecccC
Q 038945          321 FSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       321 l~~~~~~~~~L~~L~i~~~  339 (363)
                      ++  +..+++|+.|++++|
T Consensus       333 ~~--~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          333 LK--LSTHHTLKNLTLSHN  349 (390)
T ss_dssp             CC--CCTTCCCSEEECCSS
T ss_pred             eC--chhhccCCEEEcCCC
Confidence            54  567888999999988

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.69  E-value=6.9e-16  Score=149.15  Aligned_cols=124  Identities=19%  Similarity=0.243  Sum_probs=68.2

Q ss_pred             ccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccc
Q 038945          194 KVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAE  273 (363)
Q Consensus       194 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  273 (363)
                      ..+++|+.|++++|. +..+ ..+..+++|+.|++++|. +...+.   +..+++|+.|++++|.. ..+         .
T Consensus       218 ~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~l-~~~---------~  281 (466)
T 1o6v_A          218 GILTNLDELSLNGNQ-LKDI-GTLASLTNLTDLDLANNQ-ISNLAP---LSGLTKLTELKLGANQI-SNI---------S  281 (466)
T ss_dssp             GGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSSCC-CCC---------G
T ss_pred             cccCCCCEEECCCCC-cccc-hhhhcCCCCCEEECCCCc-cccchh---hhcCCCCCEEECCCCcc-Ccc---------c
Confidence            334455555555443 2222 123345555555555542 222221   34455555555555432 111         1


Q ss_pred             ccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          274 DCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       274 ~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      .+..+++|+.|++++| .++.++.   ...+++|++|++++| .++..+. +..+++|+.|++++|
T Consensus       282 ~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          282 PLAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNN  341 (466)
T ss_dssp             GGTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS
T ss_pred             cccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCC
Confidence            1345777888888775 3444432   456788888888777 4554433 568888888888888

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.69  E-value=1.3e-15  Score=150.45  Aligned_cols=135  Identities=19%  Similarity=0.170  Sum_probs=100.7

Q ss_pred             cccCCCccEEEeccCcCccccc-ccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccc
Q 038945          193 NKVFANLKSLEISECSQLQKLV-PASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEE  271 (363)
Q Consensus       193 l~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  271 (363)
                      +..+++|+.|++++|......+ ..+..+++|++|++++|.-....+  ..+..+++|+.|++++|......       .
T Consensus       392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~-------~  462 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLEVLKMAGNSFQENF-------L  462 (570)
T ss_dssp             EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT--TTTTTCTTCCEEECTTCEEGGGE-------E
T ss_pred             ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch--hhhhcCCcCcEEECcCCcCcccc-------c
Confidence            6677999999999986443333 356788999999999985443333  23678999999999998743211       1


Q ss_pred             ccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccC-CCcCCCCcceeecccC
Q 038945          272 AEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPKLNKVKPTEE  339 (363)
Q Consensus       272 ~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~i~~~  339 (363)
                      ...+..+++|+.|++++| .++.+.... +..+++|++|++++| +++.++. .+..+++|+.|++++|
T Consensus       463 p~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N  528 (570)
T 2z63_A          463 PDIFTELRNLTFLDLSQC-QLEQLSPTA-FNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTN  528 (570)
T ss_dssp             CSCCTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             hhhhhcccCCCEEECCCC-ccccCChhh-hhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCC
Confidence            223567899999999997 455553332 677899999999887 6776665 4669999999999999

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.69  E-value=2.7e-15  Score=138.31  Aligned_cols=131  Identities=12%  Similarity=0.066  Sum_probs=92.0

Q ss_pred             CCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccc
Q 038945          197 ANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCI  276 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  276 (363)
                      ++|+.|+++++..-...+..+..+++|++|+++++. ++.++. ..+..+++|+.|++++|. +..++.        .+.
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~lp~--------~l~  260 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDN-GSLANTPHLRELHLNNNK-LVKVPG--------GLA  260 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECT-TTGGGSTTCCEEECCSSC-CSSCCT--------TTT
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeCh-hhccCCCCCCEEECCCCc-CccCCh--------hhc
Confidence            789999999987444445677889999999999874 555543 236788999999999985 333322        255


Q ss_pred             cccccceecccccccccccCCCCcc-----cCCCCccEEeeccCCCcc--cccCCCcCCCCcceeecccC
Q 038945          277 VFRKLEYLGLDCLPSLTSFCLGNYA-----LEFPSLEHVVVRQCPTMK--IFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       277 ~l~~L~~L~l~~c~~L~~~~~~~~~-----~~~~~L~~L~l~~c~~l~--~l~~~~~~~~~L~~L~i~~~  339 (363)
                      .+++|++|+++++ .++.++.....     ...+.++.+++.+++-..  ..|.....+++++.+++++|
T Consensus       261 ~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          261 DHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             TCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             cCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            6899999999986 56666554311     124689999998876432  23345557889999999876

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.69  E-value=1.4e-15  Score=138.55  Aligned_cols=245  Identities=16%  Similarity=0.074  Sum_probs=171.5

Q ss_pred             hhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCccc--CchhHHhhcCCCCEEEEccCC
Q 038945           37 TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSA--IPANLIRCLNNLASLEVRNCD  114 (363)
Q Consensus        37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~--~p~~~l~~l~~L~~L~l~~~~  114 (363)
                      .+..+|..+  .++|++|+++++. ++.++... +  ..+++|++|+++++ ++...  .+.. +..+++|++|+++++.
T Consensus        18 ~l~~ip~~~--~~~l~~L~L~~n~-l~~i~~~~-~--~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~L~Ls~n~   89 (306)
T 2z66_A           18 GLTSVPTGI--PSSATRLELESNK-LQSLPHGV-F--DKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLDLSFNG   89 (306)
T ss_dssp             CCSSCCSCC--CTTCCEEECCSSC-CCCCCTTT-T--TTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCEEECCSCS
T ss_pred             CcccCCCCC--CCCCCEEECCCCc-cCccCHhH-h--hccccCCEEECCCC-ccCcccCcccc-cccccccCEEECCCCc
Confidence            344455543  3689999999987 88766543 1  47899999999988 44432  1344 6679999999999874


Q ss_pred             CcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccc
Q 038945          115 SLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNK  194 (363)
Q Consensus       115 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~  194 (363)
                       +..++..          ...+++|+.|+++++. ++.+..                                  ...+.
T Consensus        90 -i~~l~~~----------~~~l~~L~~L~l~~n~-l~~~~~----------------------------------~~~~~  123 (306)
T 2z66_A           90 -VITMSSN----------FLGLEQLEHLDFQHSN-LKQMSE----------------------------------FSVFL  123 (306)
T ss_dssp             -EEEEEEE----------EETCTTCCEEECTTSE-EESSTT----------------------------------TTTTT
T ss_pred             -cccChhh----------cCCCCCCCEEECCCCc-cccccc----------------------------------chhhh
Confidence             5544321          2368899999998753 333211                                  12355


Q ss_pred             cCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCcc-ccCchhhhhhccccCeEeeccCcchhhhhccCcccccc
Q 038945          195 VFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLI-NLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAE  273 (363)
Q Consensus       195 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  273 (363)
                      .+++|+.|+++++......+..+..+++|++|+++++.--. ..+.  .+..+++|+.|++++|.. ..+       ...
T Consensus       124 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~Ls~n~l-~~~-------~~~  193 (306)
T 2z66_A          124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD--IFTELRNLTFLDLSQCQL-EQL-------SPT  193 (306)
T ss_dssp             TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS--CCTTCTTCCEEECTTSCC-CEE-------CTT
T ss_pred             hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh--HHhhCcCCCEEECCCCCc-CCc-------CHH
Confidence            67899999999997555555667789999999999875332 2332  367889999999999853 322       122


Q ss_pred             ccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCC-CcceeecccCCCCCCccccCCcc
Q 038945          274 DCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAP-KLNKVKPTEEEDGDDEGCWEGNL  352 (363)
Q Consensus       274 ~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~-~L~~L~i~~~~~~~~~~~~~~~~  352 (363)
                      .+..+++|+.|+++++ .++.++... +..+++|++|+++++.-....+..+..++ +|+.|++++|     ++..+.++
T Consensus       194 ~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N-----~~~~~c~~  266 (306)
T 2z66_A          194 AFNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN-----DFACTCEH  266 (306)
T ss_dssp             TTTTCTTCCEEECTTS-CCSBCCSGG-GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC-----CEECSGGG
T ss_pred             HhcCCCCCCEEECCCC-ccCccChhh-ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC-----CeecccCh
Confidence            3567899999999996 456555432 56689999999988854445556777775 9999999999     55444443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.68  E-value=3.9e-16  Score=154.43  Aligned_cols=141  Identities=15%  Similarity=0.181  Sum_probs=89.0

Q ss_pred             ccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCch-hhhhhccccCeEeeccCcchhhhhccCcc--c
Q 038945          194 KVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTL-STSESLVNLERMKMSDCKMMEEIIQSQVG--E  270 (363)
Q Consensus       194 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~--~  270 (363)
                      ..+++|+.|+++++......+..+..+++|+.|+++++ .++.++.. ..+..+++|+.|+++++.....++...-.  .
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            45567777777776544445555666777777777665 34443321 12456667777777665432212110000  0


Q ss_pred             ------------cccccccc-cccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC-CcCCCCcceeec
Q 038945          271 ------------EAEDCIVF-RKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKP  336 (363)
Q Consensus       271 ------------~~~~~~~l-~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~i  336 (363)
                                  .......+ ++|+.|+++++ .++.++..  ...+++|++|+++++ +++.+|.+ +..+++|+.|++
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l  504 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKD--VTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWL  504 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTT--TTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEEC
T ss_pred             cCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChh--hcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEe
Confidence                        00001123 58888988886 67777776  558899999999776 78888887 678999999999


Q ss_pred             ccC
Q 038945          337 TEE  339 (363)
Q Consensus       337 ~~~  339 (363)
                      ++|
T Consensus       505 ~~N  507 (562)
T 3a79_B          505 HDN  507 (562)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            999

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.68  E-value=4.9e-16  Score=149.43  Aligned_cols=106  Identities=18%  Similarity=0.215  Sum_probs=78.4

Q ss_pred             CCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCc
Q 038945          221 ENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNY  300 (363)
Q Consensus       221 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~  300 (363)
                      ++|+.|+++++.- ...+. ..+..+++|+.|++++|.. ..+       ....+..+++|++|+++++ .++.+.... 
T Consensus       275 ~~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~Ls~n~l-~~~-------~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-  342 (455)
T 3v47_A          275 SGVKTCDLSKSKI-FALLK-SVFSHFTDLEQLTLAQNEI-NKI-------DDNAFWGLTHLLKLNLSQN-FLGSIDSRM-  342 (455)
T ss_dssp             SCCCEEECCSSCC-CEECT-TTTTTCTTCCEEECTTSCC-CEE-------CTTTTTTCTTCCEEECCSS-CCCEECGGG-
T ss_pred             cCceEEEecCccc-cccch-hhcccCCCCCEEECCCCcc-ccc-------ChhHhcCcccCCEEECCCC-ccCCcChhH-
Confidence            6889999988753 33322 2367889999999998863 222       1223567899999999997 556554432 


Q ss_pred             ccCCCCccEEeeccCCCcccc-cCCCcCCCCcceeecccC
Q 038945          301 ALEFPSLEHVVVRQCPTMKIF-SQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       301 ~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~i~~~  339 (363)
                      +..+++|++|++++| .++.+ |..+..+++|++|++++|
T Consensus       343 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N  381 (455)
T 3v47_A          343 FENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN  381 (455)
T ss_dssp             GTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred             hcCcccCCEEECCCC-cccccChhhccccccccEEECCCC
Confidence            667899999999888 55555 667789999999999998

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.68  E-value=6.5e-16  Score=153.95  Aligned_cols=278  Identities=13%  Similarity=0.111  Sum_probs=158.1

Q ss_pred             cccCCCceeEEEeeecccceeeeccCCCchhhhhh-hccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecC
Q 038945            8 ILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCY-IEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDD   86 (363)
Q Consensus         8 ~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~   86 (363)
                      +..+++|++|+++.          ..    +..++ ..+..+++|++|+++++. +..++... +  +.+++|++|++++
T Consensus        71 ~~~l~~L~~L~L~~----------n~----l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~--~~l~~L~~L~L~~  132 (597)
T 3oja_B           71 LDSFRQVELLNLND----------LQ----IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV-F--QNVPLLTVLVLER  132 (597)
T ss_dssp             HHHCCCCSEEECTT----------SC----CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT-T--TTCTTCCEEECCS
T ss_pred             HccCCCCcEEECCC----------CC----CCCCChHHhcCCCCCCEEECCCCc-CCCCCHHH-H--cCCCCCCEEEeeC
Confidence            35688999999882          11    22232 345667888888888876 66654332 1  4678888888888


Q ss_pred             CCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhh-
Q 038945           87 CKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLE-  165 (363)
Q Consensus        87 c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~-  165 (363)
                      | .+.. .|..+++.+++|++|++++|. +..++.         .....+++|+.|+++++. +..+....-+.|..+. 
T Consensus       133 n-~l~~-l~~~~~~~l~~L~~L~Ls~N~-l~~~~~---------~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~L~l  199 (597)
T 3oja_B          133 N-DLSS-LPRGIFHNTPKLTTLSMSNNN-LERIED---------DTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANV  199 (597)
T ss_dssp             S-CCCC-CCTTTTTTCTTCCEEECCSSC-CCBCCT---------TTTTTCTTCCEEECTTSC-CSBCCGGGCTTCSEEEC
T ss_pred             C-CCCC-CCHHHhccCCCCCEEEeeCCc-CCCCCh---------hhhhcCCcCcEEECcCCC-CCCcChhhhhhhhhhhc
Confidence            7 4554 454546788888888888764 433321         012356777777776652 2222111111111111 


Q ss_pred             --hccccch--hhHH-HHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCch
Q 038945          166 --CNFIRIK--SNLM-TRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTL  240 (363)
Q Consensus       166 --~~~~~l~--~~L~-l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~  240 (363)
                        .....+.  +.|. +.+ ....+.  ..+ ....++|+.|++++|.. ... ..+..+++|+.|+++++. +...++ 
T Consensus       200 ~~n~l~~l~~~~~L~~L~l-s~n~l~--~~~-~~~~~~L~~L~L~~n~l-~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~-  271 (597)
T 3oja_B          200 SYNLLSTLAIPIAVEELDA-SHNSIN--VVR-GPVNVELTILKLQHNNL-TDT-AWLLNYPGLVEVDLSYNE-LEKIMY-  271 (597)
T ss_dssp             CSSCCSEEECCTTCSEEEC-CSSCCC--EEE-CSCCSCCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSC-CCEEES-
T ss_pred             ccCccccccCCchhheeec-cCCccc--ccc-cccCCCCCEEECCCCCC-CCC-hhhccCCCCCEEECCCCc-cCCCCH-
Confidence              0000000  0000 000 000000  000 01124677777776642 222 445677888888888764 433322 


Q ss_pred             hhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCccc
Q 038945          241 STSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI  320 (363)
Q Consensus       241 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~  320 (363)
                      ..+..+++|+.|++++|. +..+..        ....+++|+.|++++| .+..++..  ...+++|+.|++++| .++.
T Consensus       272 ~~~~~l~~L~~L~Ls~N~-l~~l~~--------~~~~l~~L~~L~Ls~N-~l~~i~~~--~~~l~~L~~L~L~~N-~l~~  338 (597)
T 3oja_B          272 HPFVKMQRLERLYISNNR-LVALNL--------YGQPIPTLKVLDLSHN-HLLHVERN--QPQFDRLENLYLDHN-SIVT  338 (597)
T ss_dssp             GGGTTCSSCCEEECTTSC-CCEEEC--------SSSCCTTCCEEECCSS-CCCCCGGG--HHHHTTCSEEECCSS-CCCC
T ss_pred             HHhcCccCCCEEECCCCC-CCCCCc--------ccccCCCCcEEECCCC-CCCccCcc--cccCCCCCEEECCCC-CCCC
Confidence            225677888888888764 232211        1345788899988886 45566554  566888999999777 4555


Q ss_pred             ccCCCcCCCCcceeecccC
Q 038945          321 FSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       321 l~~~~~~~~~L~~L~i~~~  339 (363)
                      ++  +..+++|+.|++++|
T Consensus       339 ~~--~~~~~~L~~L~l~~N  355 (597)
T 3oja_B          339 LK--LSTHHTLKNLTLSHN  355 (597)
T ss_dssp             CC--CCTTCCCSEEECCSS
T ss_pred             cC--hhhcCCCCEEEeeCC
Confidence            54  567889999999988

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.68  E-value=1.3e-15  Score=146.85  Aligned_cols=264  Identities=15%  Similarity=0.099  Sum_probs=144.5

Q ss_pred             ccccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecC
Q 038945            7 GILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDD   86 (363)
Q Consensus         7 ~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~   86 (363)
                      ++..+++|++|+++.          ..+    ..++  +..+++|++|+++++. ++.++  .    +.+++|++|++++
T Consensus        59 ~l~~l~~L~~L~Ls~----------n~l----~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~----~~l~~L~~L~L~~  115 (457)
T 3bz5_A           59 GIEKLTGLTKLICTS----------NNI----TTLD--LSQNTNLTYLACDSNK-LTNLD--V----TPLTKLTYLNCDT  115 (457)
T ss_dssp             TGGGCTTCSEEECCS----------SCC----SCCC--CTTCTTCSEEECCSSC-CSCCC--C----TTCTTCCEEECCS
T ss_pred             hhcccCCCCEEEccC----------CcC----CeEc--cccCCCCCEEECcCCC-Cceee--c----CCCCcCCEEECCC
Confidence            577889999999982          122    2222  5567788888888876 66642  2    4677888888877


Q ss_pred             CCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhh-
Q 038945           87 CKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLE-  165 (363)
Q Consensus        87 c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~-  165 (363)
                      + ++.. .+   ++.+++|++|+++++. +..++            ...+++|+.|+++++..+..+....-+.|+.+. 
T Consensus       116 N-~l~~-l~---~~~l~~L~~L~l~~N~-l~~l~------------l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l  177 (457)
T 3bz5_A          116 N-KLTK-LD---VSQNPLLTYLNCARNT-LTEID------------VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC  177 (457)
T ss_dssp             S-CCSC-CC---CTTCTTCCEEECTTSC-CSCCC------------CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEEC
T ss_pred             C-cCCe-ec---CCCCCcCCEEECCCCc-cceec------------cccCCcCCEEECCCCCcccccccccCCcCCEEEC
Confidence            7 4554 34   6677778888877653 43332            124555555555555333322111111111111 


Q ss_pred             ----------hccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCcc
Q 038945          166 ----------CNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLI  235 (363)
Q Consensus       166 ----------~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~  235 (363)
                                ..++++. .|.+   +..+++..   .+..+++|+.|+++++. +..+|  +..+++|+.|+++++ .++
T Consensus       178 s~n~l~~l~l~~l~~L~-~L~l---~~N~l~~~---~l~~l~~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N-~l~  246 (457)
T 3bz5_A          178 SFNKITELDVSQNKLLN-RLNC---DTNNITKL---DLNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVN-PLT  246 (457)
T ss_dssp             CSSCCCCCCCTTCTTCC-EEEC---CSSCCSCC---CCTTCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSS-CCS
T ss_pred             CCCccceeccccCCCCC-EEEC---cCCcCCee---ccccCCCCCEEECcCCc-ccccC--ccccCCCCEEEeeCC-cCC
Confidence                      0111111 0000   00111100   24556677777777664 33343  456677777777765 344


Q ss_pred             ccCchhhhhhccccCeEe----------eccCcchhhhhccCccccccccccccccceecccccccccccCCCC------
Q 038945          236 NLLTLSTSESLVNLERMK----------MSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGN------  299 (363)
Q Consensus       236 ~~~~~~~~~~l~~L~~L~----------l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~------  299 (363)
                      .++.    +.+++|+.|+          +++|..+..++          ...+++|+.|++++|..++.++...      
T Consensus       247 ~~~~----~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----------~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L  312 (457)
T 3bz5_A          247 ELDV----STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----------AEGCRKIKELDVTHNTQLYLLDCQAAGITEL  312 (457)
T ss_dssp             CCCC----TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----------CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC
T ss_pred             CcCH----HHCCCCCEEeccCCCCCEEECCCCccCCccc----------ccccccCCEEECCCCcccceeccCCCcceEe
Confidence            4432    2344444433          33333222211          2357889999999887665554320      


Q ss_pred             cccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          300 YALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       300 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      ....+++|++|+++++ +++.+  .+..+++|+.|++++|
T Consensus       313 ~l~~~~~L~~L~L~~N-~l~~l--~l~~l~~L~~L~l~~N  349 (457)
T 3bz5_A          313 DLSQNPKLVYLYLNNT-ELTEL--DVSHNTKLKSLSCVNA  349 (457)
T ss_dssp             CCTTCTTCCEEECTTC-CCSCC--CCTTCTTCSEEECCSS
T ss_pred             chhhcccCCEEECCCC-ccccc--ccccCCcCcEEECCCC
Confidence            1334677888888555 56655  3778999999999988

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.67  E-value=1.7e-15  Score=139.73  Aligned_cols=104  Identities=15%  Similarity=0.234  Sum_probs=64.6

Q ss_pred             CCCceeEEEeeecccceeeeccCCCchhhhh-hhccccccccceEecccCcCcccc-cccCcCCCCCCCCccEEEecCCC
Q 038945           11 TPKLHKVQVTVKEEGELYHREGNLNSTIQKC-YIEMIGFRDIENIKLSLFPRLKEI-WHNQALPVSFFNNLRHLVLDDCK   88 (363)
Q Consensus        11 ~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~l~~~~l~~L~~L~l~~c~   88 (363)
                      .++|+.|+++.              ..+..+ +..+..+++|++|+++++. ++.+ +...    ..+++|++|+++++ 
T Consensus        53 ~~~l~~L~l~~--------------n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~----~~l~~L~~L~L~~n-  112 (332)
T 2ft3_A           53 SPDTTLLDLQN--------------NDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAF----SPLRKLQKLYISKN-  112 (332)
T ss_dssp             CTTCCEEECCS--------------SCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGS----TTCTTCCEEECCSS-
T ss_pred             CCCCeEEECCC--------------CcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHh----hCcCCCCEEECCCC-
Confidence            46788888882              122223 2345667888888888876 6665 2333    46888888888877 


Q ss_pred             CCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeeccccc
Q 038945           89 NMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP  148 (363)
Q Consensus        89 ~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  148 (363)
                      ++.. .|..+   .++|++|+++++. +..++..         ....+++|+.|+++++.
T Consensus       113 ~l~~-l~~~~---~~~L~~L~l~~n~-i~~~~~~---------~~~~l~~L~~L~l~~n~  158 (332)
T 2ft3_A          113 HLVE-IPPNL---PSSLVELRIHDNR-IRKVPKG---------VFSGLRNMNCIEMGGNP  158 (332)
T ss_dssp             CCCS-CCSSC---CTTCCEEECCSSC-CCCCCSG---------GGSSCSSCCEEECCSCC
T ss_pred             cCCc-cCccc---cccCCEEECCCCc-cCccCHh---------HhCCCccCCEEECCCCc
Confidence            4553 44332   2688888888754 4443311         12357778888877653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.67  E-value=8.7e-16  Score=140.93  Aligned_cols=216  Identities=15%  Similarity=0.158  Sum_probs=161.3

Q ss_pred             ccccccceEecccCcCcccccc-cCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccc
Q 038945           46 IGFRDIENIKLSLFPRLKEIWH-NQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEE  124 (363)
Q Consensus        46 ~~~~~L~~L~l~~~~~l~~~~~-~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~  124 (363)
                      ..+++|++|+++++. ++.++. ..    ..+++|++|++++| ++....+   +..+++|++|+++++. +..++    
T Consensus        31 ~~~~~L~~L~L~~n~-l~~~~~~~~----~~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~Ls~n~-l~~l~----   96 (317)
T 3o53_A           31 QSAWNVKELDLSGNP-LSQISAADL----APFTKLELLNLSSN-VLYETLD---LESLSTLRTLDLNNNY-VQELL----   96 (317)
T ss_dssp             TTGGGCSEEECTTSC-CCCCCHHHH----TTCTTCCEEECTTS-CCEEEEE---ETTCTTCCEEECCSSE-EEEEE----
T ss_pred             ccCCCCCEEECcCCc-cCcCCHHHh----hCCCcCCEEECCCC-cCCcchh---hhhcCCCCEEECcCCc-ccccc----
Confidence            346789999999986 776542 23    57999999999998 4555444   7889999999999874 55543    


Q ss_pred             ccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEe
Q 038945          125 LNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEI  204 (363)
Q Consensus       125 ~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l  204 (363)
                                ..++|+.|+++++. +..+.                                      ...+++|+.|++
T Consensus        97 ----------~~~~L~~L~l~~n~-l~~~~--------------------------------------~~~~~~L~~L~l  127 (317)
T 3o53_A           97 ----------VGPSIETLHAANNN-ISRVS--------------------------------------CSRGQGKKNIYL  127 (317)
T ss_dssp             ----------ECTTCCEEECCSSC-CSEEE--------------------------------------ECCCSSCEEEEC
T ss_pred             ----------CCCCcCEEECCCCc-cCCcC--------------------------------------ccccCCCCEEEC
Confidence                      34789999998763 33321                                      112478999999


Q ss_pred             ccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccccccccee
Q 038945          205 SECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYL  284 (363)
Q Consensus       205 ~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L  284 (363)
                      +++..-...+..+..+++|++|+++++ .++.++...+...+++|+.|++++|. ++.+         +....+++|++|
T Consensus       128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~---------~~~~~l~~L~~L  196 (317)
T 3o53_A          128 ANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDV---------KGQVVFAKLKTL  196 (317)
T ss_dssp             CSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEE---------ECCCCCTTCCEE
T ss_pred             CCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Cccc---------ccccccccCCEE
Confidence            998754444456677899999999987 45555444445678999999999885 3322         112348899999


Q ss_pred             cccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          285 GLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       285 ~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      +++++ .++.++..  +..+++|++|++++| .++.+|..+..+++|+.|++++|
T Consensus       197 ~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          197 DLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN  247 (317)
T ss_dssp             ECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC
T ss_pred             ECCCC-cCCcchhh--hcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCC
Confidence            99986 66777665  677899999999777 77888888889999999999998

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.67  E-value=1.1e-15  Score=140.16  Aligned_cols=225  Identities=14%  Similarity=0.072  Sum_probs=165.6

Q ss_pred             cccceEecccCcCcc---cccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccc
Q 038945           49 RDIENIKLSLFPRLK---EIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEEL  125 (363)
Q Consensus        49 ~~L~~L~l~~~~~l~---~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~  125 (363)
                      .+++.|+++++. +.   .++...    ..+++|++|+++++.++.+..|.. ++.+++|++|+++++.-...++..   
T Consensus        50 ~~l~~L~L~~~~-l~~~~~~~~~l----~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~---  120 (313)
T 1ogq_A           50 YRVNNLDLSGLN-LPKPYPIPSSL----ANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDF---  120 (313)
T ss_dssp             CCEEEEEEECCC-CSSCEECCGGG----GGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGG---
T ss_pred             ceEEEEECCCCC-ccCCcccChhH----hCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHH---
Confidence            579999999987 65   455555    589999999999644677667766 889999999999987533233321   


Q ss_pred             cccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEec
Q 038945          126 NADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEIS  205 (363)
Q Consensus       126 ~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~  205 (363)
                             ...+++|+.|+++++. +..                                   ..+..+..+++|+.|+++
T Consensus       121 -------~~~l~~L~~L~Ls~N~-l~~-----------------------------------~~p~~~~~l~~L~~L~L~  157 (313)
T 1ogq_A          121 -------LSQIKTLVTLDFSYNA-LSG-----------------------------------TLPPSISSLPNLVGITFD  157 (313)
T ss_dssp             -------GGGCTTCCEEECCSSE-EES-----------------------------------CCCGGGGGCTTCCEEECC
T ss_pred             -------HhCCCCCCEEeCCCCc-cCC-----------------------------------cCChHHhcCCCCCeEECc
Confidence                   2367899999998763 221                                   113345677999999999


Q ss_pred             cCcCcccccccccCCC-CCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccccccccee
Q 038945          206 ECSQLQKLVPASCYLE-NLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYL  284 (363)
Q Consensus       206 ~c~~l~~l~~~~~~~~-~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L  284 (363)
                      ++.....+|..+..++ +|++|+++++.--...|..  +..++ |+.|+++++..-..        ....+..+++|+.|
T Consensus       158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~--~~~l~-L~~L~Ls~N~l~~~--------~~~~~~~l~~L~~L  226 (313)
T 1ogq_A          158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT--FANLN-LAFVDLSRNMLEGD--------ASVLFGSDKNTQKI  226 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG--GGGCC-CSEEECCSSEEEEC--------CGGGCCTTSCCSEE
T ss_pred             CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH--HhCCc-ccEEECcCCcccCc--------CCHHHhcCCCCCEE
Confidence            9976557777778887 9999999997543344432  55665 99999999864222        12235678999999


Q ss_pred             cccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          285 GLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       285 ~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      +++++. +......  ...+++|++|++++|.--..+|..+..+++|+.|++++|
T Consensus       227 ~L~~N~-l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          227 HLAKNS-LAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             ECCSSE-ECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             ECCCCc-eeeecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence            999974 4433332  556899999999888544478888889999999999998

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.66  E-value=2.6e-15  Score=138.61  Aligned_cols=251  Identities=17%  Similarity=0.145  Sum_probs=141.9

Q ss_pred             hhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcc
Q 038945           38 IQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLE  117 (363)
Q Consensus        38 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~  117 (363)
                      +..+|..+  .++|++|+++++. ++.++... +  ..+++|++|++++| ++....|.. ++.+++|++|+++++. +.
T Consensus        45 l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~-~--~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-l~  115 (332)
T 2ft3_A           45 LKAVPKEI--SPDTTLLDLQNND-ISELRKDD-F--KGLQHLYALVLVNN-KISKIHEKA-FSPLRKLQKLYISKNH-LV  115 (332)
T ss_dssp             CSSCCSCC--CTTCCEEECCSSC-CCEECTTT-T--TTCTTCCEEECCSS-CCCEECGGG-STTCTTCCEEECCSSC-CC
T ss_pred             ccccCCCC--CCCCeEEECCCCc-CCccCHhH-h--hCCCCCcEEECCCC-ccCccCHhH-hhCcCCCCEEECCCCc-CC
Confidence            34455544  3688999999886 77654322 1  57889999999988 566655544 7889999999998764 55


Q ss_pred             eecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhh--hhccccccc
Q 038945          118 EVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLL--KENAESNKV  195 (363)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~--~~~~~~l~~  195 (363)
                      .++.            ..+++|+.|+++++. +..+....-       ..++++. .|.  + ....+.  ...+..+..
T Consensus       116 ~l~~------------~~~~~L~~L~l~~n~-i~~~~~~~~-------~~l~~L~-~L~--l-~~n~l~~~~~~~~~~~~  171 (332)
T 2ft3_A          116 EIPP------------NLPSSLVELRIHDNR-IRKVPKGVF-------SGLRNMN-CIE--M-GGNPLENSGFEPGAFDG  171 (332)
T ss_dssp             SCCS------------SCCTTCCEEECCSSC-CCCCCSGGG-------SSCSSCC-EEE--C-CSCCCBGGGSCTTSSCS
T ss_pred             ccCc------------cccccCCEEECCCCc-cCccCHhHh-------CCCccCC-EEE--C-CCCccccCCCCcccccC
Confidence            4442            123788888887653 332211100       0011111 000  0 000010  011222333


Q ss_pred             CCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945          196 FANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC  275 (363)
Q Consensus       196 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  275 (363)
                      + +|+.|+++++. +..+|..+  +++|++|+++++ .++.++. ..+..+++|+.|+++++.. ..+       ....+
T Consensus       172 l-~L~~L~l~~n~-l~~l~~~~--~~~L~~L~l~~n-~i~~~~~-~~l~~l~~L~~L~L~~N~l-~~~-------~~~~~  237 (332)
T 2ft3_A          172 L-KLNYLRISEAK-LTGIPKDL--PETLNELHLDHN-KIQAIEL-EDLLRYSKLYRLGLGHNQI-RMI-------ENGSL  237 (332)
T ss_dssp             C-CCSCCBCCSSB-CSSCCSSS--CSSCSCCBCCSS-CCCCCCT-TSSTTCTTCSCCBCCSSCC-CCC-------CTTGG
T ss_pred             C-ccCEEECcCCC-CCccCccc--cCCCCEEECCCC-cCCccCH-HHhcCCCCCCEEECCCCcC-CcC-------ChhHh
Confidence            3 56666666554 33343332  357777777765 3444332 1245677777777777642 221       11124


Q ss_pred             ccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCc-------CCCCcceeecccC
Q 038945          276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV-------DAPKLNKVKPTEE  339 (363)
Q Consensus       276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-------~~~~L~~L~i~~~  339 (363)
                      ..+++|+.|+++++ .++.++..  ...+++|++|+++++ .++.++....       ..++|+.|++.+|
T Consensus       238 ~~l~~L~~L~L~~N-~l~~lp~~--l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N  304 (332)
T 2ft3_A          238 SFLPTLRELHLDNN-KLSRVPAG--LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNN  304 (332)
T ss_dssp             GGCTTCCEEECCSS-CCCBCCTT--GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred             hCCCCCCEEECCCC-cCeecChh--hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecC
Confidence            56778888888875 56666655  667788888888665 5665554322       1467788888887

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.66  E-value=8.8e-16  Score=151.20  Aligned_cols=109  Identities=17%  Similarity=0.213  Sum_probs=66.3

Q ss_pred             CCCceeEEEeeecccceeeeccCCCchhhhh-hhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCC
Q 038945           11 TPKLHKVQVTVKEEGELYHREGNLNSTIQKC-YIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKN   89 (363)
Q Consensus        11 ~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~   89 (363)
                      .++|++|+++.          ..    +..+ |..+.++++|++|+++++. ++.++... +  ..+++|++|++++| .
T Consensus        25 ~~~L~~L~Ls~----------n~----l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~-~--~~l~~L~~L~Ls~n-~   85 (549)
T 2z81_A           25 TAAMKSLDLSF----------NK----ITYIGHGDLRACANLQVLILKSSR-INTIEGDA-F--YSLGSLEHLDLSDN-H   85 (549)
T ss_dssp             CTTCCEEECCS----------SC----CCEECSSTTSSCTTCCEEECTTSC-CCEECTTT-T--TTCTTCCEEECTTS-C
T ss_pred             CCCccEEECcC----------Cc----cCccChhhhhcCCcccEEECCCCC-cCccChhh-c--cccccCCEEECCCC-c
Confidence            36888888882          11    2222 3445667888888888876 66654322 1  46788888888887 4


Q ss_pred             CcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeeccccc
Q 038945           90 MSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP  148 (363)
Q Consensus        90 l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  148 (363)
                      +....+ ..++.+++|++|+++++. +..+...        .....+++|+.|+++++.
T Consensus        86 l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~--------~~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A           86 LSSLSS-SWFGPLSSLKYLNLMGNP-YQTLGVT--------SLFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             CCSCCH-HHHTTCTTCCEEECTTCC-CSSSCSS--------CSCTTCTTCCEEEEEESS
T ss_pred             cCccCH-HHhccCCCCcEEECCCCc-ccccchh--------hhhhccCCccEEECCCCc
Confidence            555444 347788888888888764 3322100        012345666666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.66  E-value=3.4e-15  Score=143.69  Aligned_cols=226  Identities=20%  Similarity=0.233  Sum_probs=162.5

Q ss_pred             CCceeEEEeeecccceeeeccCCCchhhhh-hhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCC
Q 038945           12 PKLHKVQVTVKEEGELYHREGNLNSTIQKC-YIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNM   90 (363)
Q Consensus        12 ~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l   90 (363)
                      ++|++|+++.              +.+..+ +..+..+++|++|+++++. ++.++... +  ..+++|++|+++++ ++
T Consensus        75 ~~l~~L~L~~--------------n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~-~--~~l~~L~~L~L~~n-~l  135 (452)
T 3zyi_A           75 SNTRYLNLME--------------NNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGA-F--NGLASLNTLELFDN-WL  135 (452)
T ss_dssp             TTCSEEECCS--------------SCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT-T--TTCTTCCEEECCSS-CC
T ss_pred             CCccEEECcC--------------CcCceECHHHcCCCCCCCEEECCCCc-cCCcChhh-c--cCcccCCEEECCCC-cC
Confidence            5778888771              122223 4556778999999999986 77765333 1  57999999999998 56


Q ss_pred             cccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhcccc
Q 038945           91 SSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIR  170 (363)
Q Consensus        91 ~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~  170 (363)
                      .. .+...++.+++|++|+++++. +..++..         ....+++|+.|+++++..+..+..               
T Consensus       136 ~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~~---------~~~~l~~L~~L~l~~~~~l~~i~~---------------  189 (452)
T 3zyi_A          136 TV-IPSGAFEYLSKLRELWLRNNP-IESIPSY---------AFNRVPSLMRLDLGELKKLEYISE---------------  189 (452)
T ss_dssp             SB-CCTTTSSSCTTCCEEECCSCC-CCEECTT---------TTTTCTTCCEEECCCCTTCCEECT---------------
T ss_pred             Cc-cChhhhcccCCCCEEECCCCC-cceeCHh---------HHhcCCcccEEeCCCCCCccccCh---------------
Confidence            65 444558889999999999874 5555421         134789999999999887776532               


Q ss_pred             chhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccC
Q 038945          171 IKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLE  250 (363)
Q Consensus       171 l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~  250 (363)
                                          ..+.++++|+.|+++++. +..++ .+..+++|+.|+++++. ++.++. ..+..+++|+
T Consensus       190 --------------------~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~  245 (452)
T 3zyi_A          190 --------------------GAFEGLFNLKYLNLGMCN-IKDMP-NLTPLVGLEELEMSGNH-FPEIRP-GSFHGLSSLK  245 (452)
T ss_dssp             --------------------TTTTTCTTCCEEECTTSC-CSSCC-CCTTCTTCCEEECTTSC-CSEECG-GGGTTCTTCC
T ss_pred             --------------------hhccCCCCCCEEECCCCc-ccccc-cccccccccEEECcCCc-CcccCc-ccccCccCCC
Confidence                                124566899999999885 44553 46678999999999874 555433 3367889999


Q ss_pred             eEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCC
Q 038945          251 RMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP  316 (363)
Q Consensus       251 ~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~  316 (363)
                      .|+++++.. ..+       ....+..+++|+.|+++++ .++.++... +..+++|++|++++++
T Consensus       246 ~L~L~~n~l-~~~-------~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          246 KLWVMNSQV-SLI-------ERNAFDGLASLVELNLAHN-NLSSLPHDL-FTPLRYLVELHLHHNP  301 (452)
T ss_dssp             EEECTTSCC-CEE-------CTTTTTTCTTCCEEECCSS-CCSCCCTTS-STTCTTCCEEECCSSC
T ss_pred             EEEeCCCcC-ceE-------CHHHhcCCCCCCEEECCCC-cCCccChHH-hccccCCCEEEccCCC
Confidence            999998753 222       1223566889999999986 677776553 5668899999998765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.66  E-value=3.4e-15  Score=143.19  Aligned_cols=209  Identities=22%  Similarity=0.275  Sum_probs=152.7

Q ss_pred             hccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccc
Q 038945           43 IEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHL  122 (363)
Q Consensus        43 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~  122 (363)
                      ..+..+++|++|+++++. +..++... +  ..+++|++|+++++ ++.. .+...+..+++|++|+++++. +..++..
T Consensus        82 ~~~~~l~~L~~L~Ls~n~-i~~i~~~~-~--~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~N~-i~~~~~~  154 (440)
T 3zyj_A           82 NSFKHLRHLEILQLSRNH-IRTIEIGA-F--NGLANLNTLELFDN-RLTT-IPNGAFVYLSKLKELWLRNNP-IESIPSY  154 (440)
T ss_dssp             TTTSSCSSCCEEECCSSC-CCEECGGG-G--TTCSSCCEEECCSS-CCSS-CCTTTSCSCSSCCEEECCSCC-CCEECTT
T ss_pred             HHhhCCCCCCEEECCCCc-CCccChhh-c--cCCccCCEEECCCC-cCCe-eCHhHhhccccCceeeCCCCc-ccccCHH
Confidence            456678999999999987 77765333 1  57999999999998 5665 444448899999999999864 5555421


Q ss_pred             ccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEE
Q 038945          123 EELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSL  202 (363)
Q Consensus       123 ~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L  202 (363)
                               ....+++|+.|+++++..+..+..                                   ..+.++++|+.|
T Consensus       155 ---------~~~~l~~L~~L~l~~~~~l~~i~~-----------------------------------~~~~~l~~L~~L  190 (440)
T 3zyj_A          155 ---------AFNRIPSLRRLDLGELKRLSYISE-----------------------------------GAFEGLSNLRYL  190 (440)
T ss_dssp             ---------TTTTCTTCCEEECCCCTTCCEECT-----------------------------------TTTTTCSSCCEE
T ss_pred             ---------HhhhCcccCEeCCCCCCCcceeCc-----------------------------------chhhcccccCee
Confidence                     134688999999998877766422                                   125566899999


Q ss_pred             EeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccc
Q 038945          203 EISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLE  282 (363)
Q Consensus       203 ~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~  282 (363)
                      ++++|. +..++ .+..+++|+.|+++++ .++.++. ..+..+++|+.|+++++. +..+       ....+..+++|+
T Consensus       191 ~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~-------~~~~~~~l~~L~  258 (440)
T 3zyj_A          191 NLAMCN-LREIP-NLTPLIKLDELDLSGN-HLSAIRP-GSFQGLMHLQKLWMIQSQ-IQVI-------ERNAFDNLQSLV  258 (440)
T ss_dssp             ECTTSC-CSSCC-CCTTCSSCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTCC-CCEE-------CTTSSTTCTTCC
T ss_pred             cCCCCc-Ccccc-ccCCCcccCEEECCCC-ccCccCh-hhhccCccCCEEECCCCc-eeEE-------ChhhhcCCCCCC
Confidence            999885 55554 4567889999999987 5555543 236788999999999875 3322       222356688999


Q ss_pred             eecccccccccccCCCCcccCCCCccEEeeccCC
Q 038945          283 YLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP  316 (363)
Q Consensus       283 ~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~  316 (363)
                      .|+++++ .++.++... +..+++|+.|++++++
T Consensus       259 ~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          259 EINLAHN-NLTLLPHDL-FTPLHHLERIHLHHNP  290 (440)
T ss_dssp             EEECTTS-CCCCCCTTT-TSSCTTCCEEECCSSC
T ss_pred             EEECCCC-CCCccChhH-hccccCCCEEEcCCCC
Confidence            9999986 677666553 5668899999988764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.66  E-value=2.6e-15  Score=144.74  Aligned_cols=267  Identities=15%  Similarity=0.103  Sum_probs=154.6

Q ss_pred             cccccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEec
Q 038945            6 LGILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLD   85 (363)
Q Consensus         6 ~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~   85 (363)
                      ..+..+++|++|+++.          ..    +..+| .+..+++|++|+++++. ++.++  .    +.+++|++|+++
T Consensus        36 ~~~~~l~~L~~L~Ls~----------n~----l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~--~----~~l~~L~~L~Ls   93 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHN----------SS----ITDMT-GIEKLTGLTKLICTSNN-ITTLD--L----SQNTNLTYLACD   93 (457)
T ss_dssp             EEHHHHTTCCEEECCS----------SC----CCCCT-TGGGCTTCSEEECCSSC-CSCCC--C----TTCTTCSEEECC
T ss_pred             cChhHcCCCCEEEccC----------CC----cccCh-hhcccCCCCEEEccCCc-CCeEc--c----ccCCCCCEEECc
Confidence            3456789999999992          22    22334 46778999999999997 88753  3    579999999999


Q ss_pred             CCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhh
Q 038945           86 DCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLE  165 (363)
Q Consensus        86 ~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~  165 (363)
                      +| ++.+ .+   ++.+++|++|+++++. +..++            ...+++|+.|+++++. ++.+....-+.|+.+.
T Consensus        94 ~N-~l~~-~~---~~~l~~L~~L~L~~N~-l~~l~------------~~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~  154 (457)
T 3bz5_A           94 SN-KLTN-LD---VTPLTKLTYLNCDTNK-LTKLD------------VSQNPLLTYLNCARNT-LTEIDVSHNTQLTELD  154 (457)
T ss_dssp             SS-CCSC-CC---CTTCTTCCEEECCSSC-CSCCC------------CTTCTTCCEEECTTSC-CSCCCCTTCTTCCEEE
T ss_pred             CC-CCce-ee---cCCCCcCCEEECCCCc-CCeec------------CCCCCcCCEEECCCCc-cceeccccCCcCCEEE
Confidence            98 4665 34   7889999999999874 55442            2467889999887653 3333211111222222


Q ss_pred             -hccccch-------hhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCcccc
Q 038945          166 -CNFIRIK-------SNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINL  237 (363)
Q Consensus       166 -~~~~~l~-------~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~  237 (363)
                       ..+..+.       +.|+.-.....+++.  .+ +..+++|+.|+++++. +..+  .+..+++|+.|+++++ .++.+
T Consensus       155 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~--l~-l~~l~~L~~L~l~~N~-l~~~--~l~~l~~L~~L~Ls~N-~l~~i  227 (457)
T 3bz5_A          155 CHLNKKITKLDVTPQTQLTTLDCSFNKITE--LD-VSQNKLLNRLNCDTNN-ITKL--DLNQNIQLTFLDCSSN-KLTEI  227 (457)
T ss_dssp             CTTCSCCCCCCCTTCTTCCEEECCSSCCCC--CC-CTTCTTCCEEECCSSC-CSCC--CCTTCTTCSEEECCSS-CCSCC
T ss_pred             CCCCCcccccccccCCcCCEEECCCCccce--ec-cccCCCCCEEECcCCc-CCee--ccccCCCCCEEECcCC-ccccc
Confidence             1111010       011100000011111  11 3444555555555543 2222  2445666666666665 34444


Q ss_pred             CchhhhhhccccCeEeeccCcchhhhhccCcccccccccccc----------ccceecccccccccccCCCCcccCCCCc
Q 038945          238 LTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFR----------KLEYLGLDCLPSLTSFCLGNYALEFPSL  307 (363)
Q Consensus       238 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~----------~L~~L~l~~c~~L~~~~~~~~~~~~~~L  307 (363)
                      |    +..+++|+.|+++++. ++.+.          ...++          +|+.+++++|..+..++.    ..+++|
T Consensus       228 p----~~~l~~L~~L~l~~N~-l~~~~----------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~----~~l~~L  288 (457)
T 3bz5_A          228 D----VTPLTQLTYFDCSVNP-LTELD----------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA----EGCRKI  288 (457)
T ss_dssp             C----CTTCTTCSEEECCSSC-CSCCC----------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC----TTCTTC
T ss_pred             C----ccccCCCCEEEeeCCc-CCCcC----------HHHCCCCCEEeccCCCCCEEECCCCccCCcccc----cccccC
Confidence            3    3456677777776653 22221          11233          445555666555544442    347889


Q ss_pred             cEEeeccCCCcccccC--------CCcCCCCcceeecccC
Q 038945          308 EHVVVRQCPTMKIFSQ--------GVVDAPKLNKVKPTEE  339 (363)
Q Consensus       308 ~~L~l~~c~~l~~l~~--------~~~~~~~L~~L~i~~~  339 (363)
                      +.|++++|..+..+|.        .+..+++|+.|++++|
T Consensus       289 ~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N  328 (457)
T 3bz5_A          289 KELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT  328 (457)
T ss_dssp             CCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred             CEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC
Confidence            9999998876666553        2346678888888887

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=3.4e-15  Score=153.73  Aligned_cols=130  Identities=15%  Similarity=0.149  Sum_probs=87.8

Q ss_pred             ccCCCccEEEeccCcCcccccccccC--------CCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhc
Q 038945          194 KVFANLKSLEISECSQLQKLVPASCY--------LENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQ  265 (363)
Q Consensus       194 ~~l~~L~~L~l~~c~~l~~l~~~~~~--------~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~  265 (363)
                      ..+++|+.|+++++. +..+|.....        +++|+.|++++| .++.+|.......+++|+.|++++|.. ..++ 
T Consensus       694 ~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L-~~lp-  769 (876)
T 4ecn_A          694 ATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCF-SSFP-  769 (876)
T ss_dssp             HTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSCC-SSCC-
T ss_pred             ccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCCC-Cccc-
Confidence            356788888888874 4455544322        238888888887 555666431113788888888888753 3222 


Q ss_pred             cCccccccccccccccceecccccc------cccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          266 SQVGEEAEDCIVFRKLEYLGLDCLP------SLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       266 ~~~~~~~~~~~~l~~L~~L~l~~c~------~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                             ..+..+++|+.|++++++      -...++..  +..+++|++|++++| .+..+|..+.  ++|+.|++++|
T Consensus       770 -------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~--l~~L~~L~~L~Ls~N-~L~~Ip~~l~--~~L~~LdLs~N  837 (876)
T 4ecn_A          770 -------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG--ITTCPSLIQLQIGSN-DIRKVDEKLT--PQLYILDIADN  837 (876)
T ss_dssp             -------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT--GGGCSSCCEEECCSS-CCCBCCSCCC--SSSCEEECCSC
T ss_pred             -------hhhhcCCCCCEEECCCCCCcccccccccChHH--HhcCCCCCEEECCCC-CCCccCHhhc--CCCCEEECCCC
Confidence                   124568889999887632      23344444  667889999999877 4588887755  68999999988

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=1.6e-15  Score=147.38  Aligned_cols=216  Identities=15%  Similarity=0.167  Sum_probs=156.4

Q ss_pred             cccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccc
Q 038945           47 GFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELN  126 (363)
Q Consensus        47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~  126 (363)
                      .+++|++|+++++. +..++... +  ..+++|++|++++| .+.+..|   +..+++|++|++++|. +..++      
T Consensus        32 ~~~~L~~L~Ls~n~-l~~~~~~~-~--~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~------   96 (487)
T 3oja_A           32 SAWNVKELDLSGNP-LSQISAAD-L--APFTKLELLNLSSN-VLYETLD---LESLSTLRTLDLNNNY-VQELL------   96 (487)
T ss_dssp             TGGGCCEEECCSSC-CCCCCGGG-G--TTCTTCCEEECTTS-CCEEEEE---CTTCTTCCEEECCSSE-EEEEE------
T ss_pred             cCCCccEEEeeCCc-CCCCCHHH-H--hCCCCCCEEEeeCC-CCCCCcc---cccCCCCCEEEecCCc-CCCCC------
Confidence            35689999999987 77654322 1  57999999999998 5665555   7889999999999874 55543      


Q ss_pred             ccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEecc
Q 038945          127 ADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISE  206 (363)
Q Consensus       127 ~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~  206 (363)
                              ..++|+.|+++++. +..+..                                      ..+++|+.|++++
T Consensus        97 --------~~~~L~~L~L~~N~-l~~~~~--------------------------------------~~l~~L~~L~L~~  129 (487)
T 3oja_A           97 --------VGPSIETLHAANNN-ISRVSC--------------------------------------SRGQGKKNIYLAN  129 (487)
T ss_dssp             --------ECTTCCEEECCSSC-CCCEEE--------------------------------------CCCSSCEEEECCS
T ss_pred             --------CCCCcCEEECcCCc-CCCCCc--------------------------------------cccCCCCEEECCC
Confidence                    34789999998763 333211                                      1247888999988


Q ss_pred             CcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecc
Q 038945          207 CSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGL  286 (363)
Q Consensus       207 c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l  286 (363)
                      |..-...+..+..+++|+.|+++++ .+...++..+...+++|+.|++++|. +..+         .....+++|+.|++
T Consensus       130 N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~---------~~~~~l~~L~~L~L  198 (487)
T 3oja_A          130 NKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDV---------KGQVVFAKLKTLDL  198 (487)
T ss_dssp             SCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEE---------ECCCCCTTCCEEEC
T ss_pred             CCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc-cccc---------cccccCCCCCEEEC
Confidence            8754444556677888999999886 45544443444578899999998875 3322         11235788999999


Q ss_pred             cccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          287 DCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       287 ~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      +++ .+..++..  +..+++|+.|++++| .++.+|..+..+++|+.|++++|
T Consensus       199 s~N-~l~~~~~~--~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          199 SSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             CSS-CCCEECGG--GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC
T ss_pred             CCC-CCCCCCHh--HcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCC
Confidence            886 56666665  667888999999775 67778888888889999999888

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.64  E-value=1.3e-15  Score=150.09  Aligned_cols=58  Identities=19%  Similarity=0.187  Sum_probs=42.6

Q ss_pred             cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC-CcCCCCcceeecccC
Q 038945          277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEE  339 (363)
Q Consensus       277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~i~~~  339 (363)
                      .+++|++|+++++ .++.++.   ...+++|+.|++++| +++.++.+ +..+++|+.|++++|
T Consensus       449 ~l~~L~~L~Ls~N-~l~~ip~---~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N  507 (549)
T 2z81_A          449 FLPRLQELYISRN-KLKTLPD---ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTN  507 (549)
T ss_dssp             CCTTCCEEECCSS-CCSSCCC---GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSS
T ss_pred             cCChhcEEECCCC-ccCcCCC---cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCC
Confidence            4667777777775 5555554   345788999999776 66666554 668999999999999

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.64  E-value=1.5e-14  Score=139.79  Aligned_cols=125  Identities=12%  Similarity=0.204  Sum_probs=84.6

Q ss_pred             cccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccc
Q 038945          193 NKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEA  272 (363)
Q Consensus       193 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  272 (363)
                      +..+++|+.|++++|. +..++. +..+++|+.|++++|. ++.++.   +..+++|+.|++++|.. ..+.        
T Consensus       261 ~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~n~l-~~~~--------  325 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQ-LEDISP---ISNLKNLTYLTLYFNNI-SDIS--------  325 (466)
T ss_dssp             GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-CSCCGG---GGGCTTCSEEECCSSCC-SCCG--------
T ss_pred             hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCc-ccCchh---hcCCCCCCEEECcCCcC-CCch--------
Confidence            5566788888888875 333333 5678888888888763 444433   56778888888888753 2211        


Q ss_pred             cccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          273 EDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       273 ~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                       .+..+++|+.|++.+| .+..++ .  ...+++|+.|++++|. +...+. +..+++|+.|+++++
T Consensus       326 -~~~~l~~L~~L~l~~n-~l~~~~-~--l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          326 -PVSSLTKLQRLFFYNN-KVSDVS-S--LANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQ  385 (466)
T ss_dssp             -GGGGCTTCCEEECCSS-CCCCCG-G--GTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCE
T ss_pred             -hhccCccCCEeECCCC-ccCCch-h--hccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCC
Confidence             1346788888888886 455542 2  5668888888887774 444433 668888888888877

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.64  E-value=1.2e-14  Score=131.00  Aligned_cols=131  Identities=13%  Similarity=0.111  Sum_probs=70.9

Q ss_pred             CCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945          196 FANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC  275 (363)
Q Consensus       196 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  275 (363)
                      +++|+.|+++++......+..+..+++|++|+++++ .++.++. ..+..+++|+.|+++++. ++.+.       ...+
T Consensus       104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~-------~~~~  173 (285)
T 1ozn_A          104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPD-DTFRDLGNLTHLFLHGNR-ISSVP-------ERAF  173 (285)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCEEC-------TTTT
T ss_pred             CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCH-hHhccCCCccEEECCCCc-ccccC-------HHHh
Confidence            355555555555432222334445666666666654 3333332 124456666666666653 22221       1123


Q ss_pred             ccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccC-CCcCCCCcceeecccC
Q 038945          276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPKLNKVKPTEE  339 (363)
Q Consensus       276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~i~~~  339 (363)
                      ..+++|+.|+++++ .+..+.... +..+++|++|+++++ .++.++. .+..+++|+.|++++|
T Consensus       174 ~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          174 RGLHSLDRLLLHQN-RVAHVHPHA-FRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             TTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             cCccccCEEECCCC-cccccCHhH-ccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCC
Confidence            44667777777765 344442221 555777777777666 5555553 3557778888888877

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.62  E-value=1.3e-14  Score=144.60  Aligned_cols=255  Identities=15%  Similarity=0.143  Sum_probs=164.3

Q ss_pred             ccccCCCceeEEEeeecccceeeeccCCCchhhhhh-hccccccccceEecccCcCcccccccCcCCCCCCCCccEEEec
Q 038945            7 GILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCY-IEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLD   85 (363)
Q Consensus         7 ~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~   85 (363)
                      .+..+++|++|+++.          ..    +..++ ..+.++++|++|+++++. ++.++... +  ..+++|++|+++
T Consensus        94 ~~~~l~~L~~L~L~~----------n~----l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~-~--~~l~~L~~L~Ls  155 (597)
T 3oja_B           94 AFAYAHTIQKLYMGF----------NA----IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGI-F--HNTPKLTTLSMS  155 (597)
T ss_dssp             TTTTCTTCCEEECCS----------SC----CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-T--TTCTTCCEEECC
T ss_pred             HhcCCCCCCEEECCC----------Cc----CCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHH-h--ccCCCCCEEEee
Confidence            678899999999992          22    22333 335678999999999997 88766543 1  478999999999


Q ss_pred             CCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhh
Q 038945           86 DCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLE  165 (363)
Q Consensus        86 ~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~  165 (363)
                      +| .+....|.. ++.+++|++|+++++. +..++            ...+++|+.|+++++. +..+...  ..+..+.
T Consensus       156 ~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~------------~~~l~~L~~L~l~~n~-l~~l~~~--~~L~~L~  217 (597)
T 3oja_B          156 NN-NLERIEDDT-FQATTSLQNLQLSSNR-LTHVD------------LSLIPSLFHANVSYNL-LSTLAIP--IAVEELD  217 (597)
T ss_dssp             SS-CCCBCCTTT-TTTCTTCCEEECTTSC-CSBCC------------GGGCTTCSEEECCSSC-CSEEECC--TTCSEEE
T ss_pred             CC-cCCCCChhh-hhcCCcCcEEECcCCC-CCCcC------------hhhhhhhhhhhcccCc-cccccCC--chhheee
Confidence            98 566655544 8889999999999864 44332            1234555555544321 1111000  0111111


Q ss_pred             ---hcc---c-cchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccC
Q 038945          166 ---CNF---I-RIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLL  238 (363)
Q Consensus       166 ---~~~---~-~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~  238 (363)
                         ...   + ...++|+.-.....+++  .++.+..+++|+.|+++++..-...|..+..+++|+.|+++++ .+..++
T Consensus       218 ls~n~l~~~~~~~~~~L~~L~L~~n~l~--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~  294 (597)
T 3oja_B          218 ASHNSINVVRGPVNVELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALN  294 (597)
T ss_dssp             CCSSCCCEEECSCCSCCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEE
T ss_pred             ccCCcccccccccCCCCCEEECCCCCCC--CChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCC
Confidence               000   0 00001110000111111  2356788899999999999766666777888999999999996 566665


Q ss_pred             chhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCC
Q 038945          239 TLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP  316 (363)
Q Consensus       239 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~  316 (363)
                      ..  ...+++|+.|++++|.. ..++.        .+..+++|++|++++| .+..++    ...+++|+.|++++++
T Consensus       295 ~~--~~~l~~L~~L~Ls~N~l-~~i~~--------~~~~l~~L~~L~L~~N-~l~~~~----~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          295 LY--GQPIPTLKVLDLSHNHL-LHVER--------NQPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             CS--SSCCTTCCEEECCSSCC-CCCGG--------GHHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred             cc--cccCCCCcEEECCCCCC-CccCc--------ccccCCCCCEEECCCC-CCCCcC----hhhcCCCCEEEeeCCC
Confidence            43  46789999999999863 33321        2456899999999997 455554    4458999999998875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.62  E-value=3.6e-14  Score=143.37  Aligned_cols=144  Identities=17%  Similarity=0.106  Sum_probs=96.5

Q ss_pred             ccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCch-------hhhhhccccCeEeeccCcchhh
Q 038945          190 AESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTL-------STSESLVNLERMKMSDCKMMEE  262 (363)
Q Consensus       190 ~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-------~~~~~l~~L~~L~l~~c~~l~~  262 (363)
                      +..+..+++|+.|+++++..-...+..+..+++|+.|+++++. ++.++..       ..+..+++|+.|+++++. ++.
T Consensus       473 p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~  550 (680)
T 1ziw_A          473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDE  550 (680)
T ss_dssp             SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCC
T ss_pred             CcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCC-CCC
Confidence            3456677888888888875333223346678888888888763 4443211       124677888888888764 333


Q ss_pred             hhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCc--CCCCcceeecccC-
Q 038945          263 IIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV--DAPKLNKVKPTEE-  339 (363)
Q Consensus       263 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~~L~~L~i~~~-  339 (363)
                      ++       ...+..+++|+.|+++++ .++.++... +..+++|+.|+++++ +++.++....  .+++|+.+++++| 
T Consensus       551 i~-------~~~~~~l~~L~~L~Ls~N-~l~~l~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          551 IP-------VEVFKDLFELKIIDLGLN-NLNTLPASV-FNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP  620 (680)
T ss_dssp             CC-------TTTTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred             CC-------HHHcccccCcceeECCCC-CCCcCCHhH-hCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence            31       122456889999999874 677776653 456889999999777 7776665433  6789999999998 


Q ss_pred             CCCCCc
Q 038945          340 EDGDDE  345 (363)
Q Consensus       340 ~~~~~~  345 (363)
                      -.|+++
T Consensus       621 ~~c~c~  626 (680)
T 1ziw_A          621 FDCTCE  626 (680)
T ss_dssp             CCBCCC
T ss_pred             cccCCc
Confidence            344444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.62  E-value=1.2e-14  Score=146.86  Aligned_cols=66  Identities=15%  Similarity=0.140  Sum_probs=40.0

Q ss_pred             hccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCC
Q 038945           43 IEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCD  114 (363)
Q Consensus        43 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~  114 (363)
                      ..+.++++|++|+++++. ++.++...   ...+++|++|++++| ++....+.. ++.+++|++|++++|.
T Consensus        67 ~~~~~l~~L~~L~L~~n~-l~~l~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~  132 (680)
T 1ziw_A           67 ELCQKLPMLKVLNLQHNE-LSQLSDKT---FAFCTNLTELHLMSN-SIQKIKNNP-FVKQKNLITLDLSHNG  132 (680)
T ss_dssp             THHHHCTTCCEEECCSSC-CCCCCTTT---TTTCTTCSEEECCSS-CCCCCCSCT-TTTCTTCCEEECCSSC
T ss_pred             HHHhcccCcCEEECCCCc-cCccChhh---hccCCCCCEEECCCC-ccCccChhH-ccccCCCCEEECCCCc
Confidence            334556777777777765 66554432   145677777777776 344433333 6677777777777653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.62  E-value=4e-16  Score=143.98  Aligned_cols=208  Identities=14%  Similarity=0.156  Sum_probs=135.1

Q ss_pred             cccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcce-ecccccccc
Q 038945           49 RDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEE-VLHLEELNA  127 (363)
Q Consensus        49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~-~~~~~~~~~  127 (363)
                      +.++.|+++++. +...+...    ..+++|++|++++|. +........+..+++|++|++++|. +.. .+.      
T Consensus        70 ~~l~~L~l~~n~-l~~~~~~~----~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~------  136 (336)
T 2ast_B           70 QGVIAFRCPRSF-MDQPLAEH----FSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVN------  136 (336)
T ss_dssp             TTCSEEECTTCE-ECSCCCSC----CCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHH------
T ss_pred             ccceEEEcCCcc-ccccchhh----ccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHH------
Confidence            778889988876 66544333    468899999999884 5543233447889999999998874 332 111      


Q ss_pred             cccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccC
Q 038945          128 DKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISEC  207 (363)
Q Consensus       128 ~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c  207 (363)
                          ....+++|+.|++++|..+.+.      .+                            ...+..+++|++|++++|
T Consensus       137 ----~l~~~~~L~~L~L~~~~~l~~~------~l----------------------------~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          137 ----TLAKNSNLVRLNLSGCSGFSEF------AL----------------------------QTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             ----HHTTCTTCSEEECTTCBSCCHH------HH----------------------------HHHHHHCTTCCEEECCCC
T ss_pred             ----HHhcCCCCCEEECCCCCCCCHH------HH----------------------------HHHHhcCCCCCEEcCCCC
Confidence                0235788999999988655431      00                            111344578888888888


Q ss_pred             cCccc--ccccccCCC-CCCEEeeccCc-CccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccce
Q 038945          208 SQLQK--LVPASCYLE-NLATLEVSKCH-GLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEY  283 (363)
Q Consensus       208 ~~l~~--l~~~~~~~~-~L~~L~l~~c~-~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~  283 (363)
                      ..+..  ++..+..++ +|++|++++|. .+++......+..+++|+.|++++|..++..       ....+..+++|++
T Consensus       179 ~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-------~~~~l~~l~~L~~  251 (336)
T 2ast_B          179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND-------CFQEFFQLNYLQH  251 (336)
T ss_dssp             TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG-------GGGGGGGCTTCCE
T ss_pred             CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH-------HHHHHhCCCCCCE
Confidence            55553  344456778 88888888885 4432222234567888888888888744322       1223456788888


Q ss_pred             ecccccccccccCCCCcccCCCCccEEeeccC
Q 038945          284 LGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC  315 (363)
Q Consensus       284 L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c  315 (363)
                      |++++|..+....... ...+++|++|++++|
T Consensus       252 L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          252 LSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI  282 (336)
T ss_dssp             EECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred             eeCCCCCCCCHHHHHH-HhcCCCCCEEeccCc
Confidence            8888886544332211 455888888888888

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.61  E-value=5.8e-15  Score=144.45  Aligned_cols=110  Identities=14%  Similarity=0.165  Sum_probs=68.8

Q ss_pred             cCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchh--hhhccCccccccccccccccceecccccccccc-
Q 038945          218 CYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMME--EIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTS-  294 (363)
Q Consensus       218 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~--~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~-  294 (363)
                      ..+++|++|+++++.--...+.  .+..+++|+.|++++|..-.  .++.        .+..+++|++|+++++. +.. 
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~l~~~~~--------~~~~l~~L~~L~Ls~N~-l~~~  389 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFE--NCGHLTELETLILQMNQLKELSKIAE--------MTTQMKSLQQLDISQNS-VSYD  389 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTT--TCCCCSSCCEEECCSSCCCBHHHHHH--------HHTTCTTCCEEECCSSC-CBCC
T ss_pred             hhCCcccEEEeECCccChhhhh--hhccCCCCCEEEccCCccCccccchH--------HHhhCCCCCEEECCCCc-CCcc
Confidence            5788999999999853332332  35789999999999986321  2211        12334555555555432 221 


Q ss_pred             cCCCC--------------------cccCC-CCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          295 FCLGN--------------------YALEF-PSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       295 ~~~~~--------------------~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      ++.+.                    ....+ ++|+.|++++| +++.+|.++..+++|++|++++|
T Consensus       390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N  454 (520)
T 2z7x_B          390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN  454 (520)
T ss_dssp             GGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS
T ss_pred             cccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC
Confidence            22110                    01112 57888888666 66778877778889999999888

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.61  E-value=7.3e-15  Score=133.86  Aligned_cols=227  Identities=17%  Similarity=0.165  Sum_probs=157.4

Q ss_pred             CCCceeEEEeeecccceeeeccCCCchhhhhhhc-cccccccceEecccCcCcccc---cccCcCCCCCCCCccEEEecC
Q 038945           11 TPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIE-MIGFRDIENIKLSLFPRLKEI---WHNQALPVSFFNNLRHLVLDD   86 (363)
Q Consensus        11 ~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~---~~~~~l~~~~l~~L~~L~l~~   86 (363)
                      .++|++|+++.              ..+..+|.. +..+++|++|+++++. ++.+   +...    ..+++|++|++++
T Consensus        27 ~~~l~~L~L~~--------------n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~----~~~~~L~~L~Ls~   87 (306)
T 2z66_A           27 PSSATRLELES--------------NKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSD----FGTTSLKYLDLSF   87 (306)
T ss_dssp             CTTCCEEECCS--------------SCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHH----HSCSCCCEEECCS
T ss_pred             CCCCCEEECCC--------------CccCccCHhHhhccccCCEEECCCCc-cCcccCccccc----ccccccCEEECCC
Confidence            46889998882              223345544 4678999999999986 6643   2222    3689999999999


Q ss_pred             CCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhh
Q 038945           87 CKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLEC  166 (363)
Q Consensus        87 c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~  166 (363)
                      + .+.. .|.. +..+++|++|+++++. +..++...        ....+++|+.|+++++. +...             
T Consensus        88 n-~i~~-l~~~-~~~l~~L~~L~l~~n~-l~~~~~~~--------~~~~l~~L~~L~l~~n~-l~~~-------------  141 (306)
T 2z66_A           88 N-GVIT-MSSN-FLGLEQLEHLDFQHSN-LKQMSEFS--------VFLSLRNLIYLDISHTH-TRVA-------------  141 (306)
T ss_dssp             C-SEEE-EEEE-EETCTTCCEEECTTSE-EESSTTTT--------TTTTCTTCCEEECTTSC-CEEC-------------
T ss_pred             C-cccc-Chhh-cCCCCCCCEEECCCCc-ccccccch--------hhhhccCCCEEECCCCc-CCcc-------------
Confidence            8 4554 4444 7789999999999864 44443211        13468899999998764 2221             


Q ss_pred             ccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcc-cccccccCCCCCCEEeeccCcCccccCchhhhhh
Q 038945          167 NFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQ-KLVPASCYLENLATLEVSKCHGLINLLTLSTSES  245 (363)
Q Consensus       167 ~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  245 (363)
                                            ....+..+++|+.|+++++.... ..+..+..+++|++|+++++ .++.++. ..+..
T Consensus       142 ----------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~  197 (306)
T 2z66_A          142 ----------------------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP-TAFNS  197 (306)
T ss_dssp             ----------------------STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTT
T ss_pred             ----------------------chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCH-HHhcC
Confidence                                  12235567899999999987544 46677788999999999997 4555533 23678


Q ss_pred             ccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCC-CccEEeeccCC
Q 038945          246 LVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFP-SLEHVVVRQCP  316 (363)
Q Consensus       246 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~-~L~~L~l~~c~  316 (363)
                      +++|+.|+++++.. ..+       ....+..+++|+.|+++++ .+....... ...++ +|++|++++++
T Consensus       198 l~~L~~L~L~~N~l-~~~-------~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          198 LSSLQVLNMSHNNF-FSL-------DTFPYKCLNSLQVLDYSLN-HIMTSKKQE-LQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             CTTCCEEECTTSCC-SBC-------CSGGGTTCTTCCEEECTTS-CCCBCSSSS-CCCCCTTCCEEECTTCC
T ss_pred             CCCCCEEECCCCcc-Ccc-------ChhhccCcccCCEeECCCC-CCcccCHHH-HHhhhccCCEEEccCCC
Confidence            89999999999853 222       1112456899999999997 455443332 55664 89999998774

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.60  E-value=2.6e-14  Score=147.96  Aligned_cols=126  Identities=13%  Similarity=0.135  Sum_probs=71.4

Q ss_pred             CCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccc
Q 038945          197 ANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCI  276 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  276 (363)
                      ++|+.|+++++......+..+..+++|+.|+++++. +..++. ..+..+++|+.|+++++.. ..+       ....+.
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~Ls~N~l-~~~-------~~~~~~  335 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIAD-EAFYGLDNLQVLNLSYNLL-GEL-------YSSNFY  335 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECT-TTTTTCSSCCEEEEESCCC-SCC-------CSCSCS
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCCh-HHhcCCCCCCEEECCCCCC-Ccc-------CHHHhc
Confidence            456666666665433334455566777777776653 333322 2245667777777776642 211       112345


Q ss_pred             cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      .+++|+.|+++++ .+..++... +..+++|+.|+++++ .++.++    .+++|+.+++++|
T Consensus       336 ~l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N-~l~~i~----~~~~L~~L~l~~N  391 (844)
T 3j0a_A          336 GLPKVAYIDLQKN-HIAIIQDQT-FKFLEKLQTLDLRDN-ALTTIH----FIPSIPDIFLSGN  391 (844)
T ss_dssp             SCTTCCEEECCSC-CCCCCCSSC-SCSCCCCCEEEEETC-CSCCCS----SCCSCSEEEEESC
T ss_pred             CCCCCCEEECCCC-CCCccChhh-hcCCCCCCEEECCCC-CCCccc----CCCCcchhccCCC
Confidence            5677777777775 455554432 455777777777665 444332    2566666666655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.59  E-value=1.5e-15  Score=139.28  Aligned_cols=240  Identities=13%  Similarity=0.099  Sum_probs=169.0

Q ss_pred             ccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCC
Q 038945            9 LSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCK   88 (363)
Q Consensus         9 ~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~   88 (363)
                      ..+++|++|+++.          ..+...   .|..+..+++|++|+++++. +...+. .    ..+++|++|++++| 
T Consensus        31 ~~~~~L~~L~L~~----------n~l~~~---~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~----~~l~~L~~L~Ls~n-   90 (317)
T 3o53_A           31 QSAWNVKELDLSG----------NPLSQI---SAADLAPFTKLELLNLSSNV-LYETLD-L----ESLSTLRTLDLNNN-   90 (317)
T ss_dssp             TTGGGCSEEECTT----------SCCCCC---CHHHHTTCTTCCEEECTTSC-CEEEEE-E----TTCTTCCEEECCSS-
T ss_pred             ccCCCCCEEECcC----------CccCcC---CHHHhhCCCcCCEEECCCCc-CCcchh-h----hhcCCCCEEECcCC-
Confidence            4567899999982          222221   23556778999999999987 765443 3    58999999999998 


Q ss_pred             CCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhcc
Q 038945           89 NMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNF  168 (363)
Q Consensus        89 ~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~  168 (363)
                      ++....      ..++|++|+++++. +..++            ...+++|+.|+++++. ++.+.              
T Consensus        91 ~l~~l~------~~~~L~~L~l~~n~-l~~~~------------~~~~~~L~~L~l~~N~-l~~~~--------------  136 (317)
T 3o53_A           91 YVQELL------VGPSIETLHAANNN-ISRVS------------CSRGQGKKNIYLANNK-ITMLR--------------  136 (317)
T ss_dssp             EEEEEE------ECTTCCEEECCSSC-CSEEE------------ECCCSSCEEEECCSSC-CCSGG--------------
T ss_pred             cccccc------CCCCcCEEECCCCc-cCCcC------------ccccCCCCEEECCCCC-CCCcc--------------
Confidence            455422      35899999999874 55543            2357889999998763 33221              


Q ss_pred             ccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccc-cCCCCCCEEeeccCcCccccCchhhhhhcc
Q 038945          169 IRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPAS-CYLENLATLEVSKCHGLINLLTLSTSESLV  247 (363)
Q Consensus       169 ~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~  247 (363)
                                           ...+..+++|+.|+++++......+..+ ..+++|++|+++++. ++.++..   ..++
T Consensus       137 ---------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~---~~l~  191 (317)
T 3o53_A          137 ---------------------DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ---VVFA  191 (317)
T ss_dssp             ---------------------GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC---CCCT
T ss_pred             ---------------------chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccccc---cccc
Confidence                                 1234556899999999986444334443 367999999999874 5555432   3478


Q ss_pred             ccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCc-ccccCCCc
Q 038945          248 NLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTM-KIFSQGVV  326 (363)
Q Consensus       248 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~  326 (363)
                      +|+.|++++|. +..+..        .+..+++|+.|+++++ .++.++..  ...+++|+.|++++++-. ..++..+.
T Consensus       192 ~L~~L~Ls~N~-l~~l~~--------~~~~l~~L~~L~L~~N-~l~~l~~~--~~~l~~L~~L~l~~N~~~~~~~~~~~~  259 (317)
T 3o53_A          192 KLKTLDLSSNK-LAFMGP--------EFQSAAGVTWISLRNN-KLVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (317)
T ss_dssp             TCCEEECCSSC-CCEECG--------GGGGGTTCSEEECTTS-CCCEECTT--CCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred             cCCEEECCCCc-CCcchh--------hhcccCcccEEECcCC-cccchhhH--hhcCCCCCEEEccCCCccCcCHHHHHh
Confidence            99999999875 333211        2456889999999986 67777665  677899999999887654 35666666


Q ss_pred             CCCCcceeecccC
Q 038945          327 DAPKLNKVKPTEE  339 (363)
Q Consensus       327 ~~~~L~~L~i~~~  339 (363)
                      .+++|+.+++.++
T Consensus       260 ~~~~L~~l~l~~~  272 (317)
T 3o53_A          260 KNQRVQTVAKQTV  272 (317)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             ccccceEEECCCc
Confidence            8888888888733

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.59  E-value=5.4e-16  Score=154.03  Aligned_cols=148  Identities=16%  Similarity=0.097  Sum_probs=74.9

Q ss_pred             hhhhhhhccccccc-CCCccEEEecc---CcCccccc------ccccCCCCCCEEeeccCcC-ccccCchhhhhhccccC
Q 038945          182 LQHLLKENAESNKV-FANLKSLEISE---CSQLQKLV------PASCYLENLATLEVSKCHG-LINLLTLSTSESLVNLE  250 (363)
Q Consensus       182 ~~~l~~~~~~~l~~-l~~L~~L~l~~---c~~l~~l~------~~~~~~~~L~~L~l~~c~~-l~~~~~~~~~~~l~~L~  250 (363)
                      +.++++.....+.. +++|+.|++++   |..++..|      .....+++|++|+++.|.. +.......+...+++|+
T Consensus       387 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~  466 (592)
T 3ogk_B          387 VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVR  466 (592)
T ss_dssp             ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCC
T ss_pred             cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccce
Confidence            34444444444433 66777777763   33444322      1134467777777766543 33322222233467777


Q ss_pred             eEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC-C-cCC
Q 038945          251 RMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-V-VDA  328 (363)
Q Consensus       251 ~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~-~~~  328 (363)
                      .|++++|..-...+.       ..+..+++|++|++++|+ +.+.........+++|++|++++|. ++..... + ..+
T Consensus       467 ~L~L~~n~l~~~~~~-------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~  537 (592)
T 3ogk_B          467 WMLLGYVGESDEGLM-------EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMAR  537 (592)
T ss_dssp             EEEECSCCSSHHHHH-------HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCC
T ss_pred             EeeccCCCCCHHHHH-------HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhC
Confidence            777776652111100       012346777777777775 4332111113456777777777775 5432211 1 155


Q ss_pred             CCcceeeccc
Q 038945          329 PKLNKVKPTE  338 (363)
Q Consensus       329 ~~L~~L~i~~  338 (363)
                      |.+....+..
T Consensus       538 p~l~~~~~~~  547 (592)
T 3ogk_B          538 PYWNIELIPS  547 (592)
T ss_dssp             TTEEEEEECC
T ss_pred             CCcEEEEecC
Confidence            6665554443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.59  E-value=2.5e-14  Score=141.46  Aligned_cols=112  Identities=11%  Similarity=0.075  Sum_probs=70.6

Q ss_pred             cCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccc-cC
Q 038945          218 CYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTS-FC  296 (363)
Q Consensus       218 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~-~~  296 (363)
                      ..+++|++|+++++.--...+  ..+..+++|+.|+++++. ++.+..     ....+..+++|+.|+++++. ++. ++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~N~-l~~~~~-----~~~~~~~l~~L~~L~l~~N~-l~~~~~  420 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVF--QGCSTLKRLQTLILQRNG-LKNFFK-----VALMTKNMSSLETLDVSLNS-LNSHAY  420 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTT--TTCCSCSSCCEEECCSSC-CCBTTH-----HHHTTTTCTTCCEEECTTSC-CBSCCS
T ss_pred             cCCCCceEEECCCCccccchh--hhhcccCCCCEEECCCCC-cCCccc-----chhhhcCCCCCCEEECCCCc-CCCccC
Confidence            568899999999875333233  235789999999999875 332110     00112334555555555432 221 22


Q ss_pred             CCC--------------------cccCC-CCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          297 LGN--------------------YALEF-PSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       297 ~~~--------------------~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      .+.                    ....+ ++|+.|++++| +++.+|.++..+++|+.|++++|
T Consensus       421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N  483 (562)
T 3a79_B          421 DRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN  483 (562)
T ss_dssp             SCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS
T ss_pred             hhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC
Confidence            110                    01223 58888888776 78888888889999999999988

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.59  E-value=6.1e-16  Score=142.78  Aligned_cols=215  Identities=18%  Similarity=0.168  Sum_probs=145.7

Q ss_pred             hhccccccccceEecccCcCccc--ccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcce-
Q 038945           42 YIEMIGFRDIENIKLSLFPRLKE--IWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEE-  118 (363)
Q Consensus        42 ~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~-  118 (363)
                      +..+..+++|++|+++++. +..  ++...    ..+++|++|++++|. +.+..+.. +..+++|++|++++|..+.. 
T Consensus        86 ~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~----~~~~~L~~L~L~~~~-l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~  158 (336)
T 2ast_B           86 LAEHFSPFRVQHMDLSNSV-IEVSTLHGIL----SQCSKLQNLSLEGLR-LSDPIVNT-LAKNSNLVRLNLSGCSGFSEF  158 (336)
T ss_dssp             CCSCCCCBCCCEEECTTCE-ECHHHHHHHH----TTBCCCSEEECTTCB-CCHHHHHH-HTTCTTCSEEECTTCBSCCHH
T ss_pred             chhhccCCCCCEEEccCCC-cCHHHHHHHH----hhCCCCCEEeCcCcc-cCHHHHHH-HhcCCCCCEEECCCCCCCCHH
Confidence            3345568999999999987 654  33333    579999999999994 66545554 77899999999999865653 


Q ss_pred             -ecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCC
Q 038945          119 -VLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFA  197 (363)
Q Consensus       119 -~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~  197 (363)
                       ++..          ...+++|+.|++++|.++++..                                  ....+..++
T Consensus       159 ~l~~~----------~~~~~~L~~L~l~~~~~l~~~~----------------------------------~~~~~~~l~  194 (336)
T 2ast_B          159 ALQTL----------LSSCSRLDELNLSWCFDFTEKH----------------------------------VQVAVAHVS  194 (336)
T ss_dssp             HHHHH----------HHHCTTCCEEECCCCTTCCHHH----------------------------------HHHHHHHSC
T ss_pred             HHHHH----------HhcCCCCCEEcCCCCCCcChHH----------------------------------HHHHHHhcc
Confidence             2211          2358899999999986665410                                  011234457


Q ss_pred             -CccEEEeccCc-Cc--ccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccc
Q 038945          198 -NLKSLEISECS-QL--QKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAE  273 (363)
Q Consensus       198 -~L~~L~l~~c~-~l--~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  273 (363)
                       +|++|++++|. .+  ..++..+..+++|++|++++|..++..... .+..+++|+.|++++|..+...       ...
T Consensus       195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~-------~~~  266 (336)
T 2ast_B          195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPE-------TLL  266 (336)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGG-------GGG
T ss_pred             cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHH-------HHH
Confidence             99999999995 34  334455567999999999999766543222 3568899999999999743321       122


Q ss_pred             ccccccccceecccccccccccCCCCcccCC-CCccEEeeccCCCccccc
Q 038945          274 DCIVFRKLEYLGLDCLPSLTSFCLGNYALEF-PSLEHVVVRQCPTMKIFS  322 (363)
Q Consensus       274 ~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~  322 (363)
                      .+..+++|+.|++.+|  +.   ... ...+ .+++.|++ +|+.++...
T Consensus       267 ~l~~~~~L~~L~l~~~--i~---~~~-~~~l~~~l~~L~l-~~n~l~~~~  309 (336)
T 2ast_B          267 ELGEIPTLKTLQVFGI--VP---DGT-LQLLKEALPHLQI-NCSHFTTIA  309 (336)
T ss_dssp             GGGGCTTCCEEECTTS--SC---TTC-HHHHHHHSTTSEE-SCCCSCCTT
T ss_pred             HHhcCCCCCEEeccCc--cC---HHH-HHHHHhhCcceEE-ecccCcccc
Confidence            3567999999999998  32   221 2222 23555667 566666443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.58  E-value=7e-14  Score=139.27  Aligned_cols=115  Identities=17%  Similarity=0.152  Sum_probs=86.2

Q ss_pred             CCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945          196 FANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC  275 (363)
Q Consensus       196 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  275 (363)
                      +++|+.|++++|. +..++.   .+++|+.|+++++ .++.++.     .+++|+.|++++|. ++.+.           
T Consensus       180 ~~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N-~l~~l~~-----~~~~L~~L~Ls~N~-L~~lp-----------  237 (622)
T 3g06_A          180 PSGLQELSVSDNQ-LASLPT---LPSELYKLWAYNN-RLTSLPA-----LPSGLKELIVSGNR-LTSLP-----------  237 (622)
T ss_dssp             CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSSCCC-----CCTTCCEEECCSSC-CSCCC-----------
T ss_pred             CCCCcEEECCCCC-CCCCCC---ccchhhEEECcCC-cccccCC-----CCCCCCEEEccCCc-cCcCC-----------
Confidence            4778888888775 444443   2578888888876 4555542     34789999988873 34332           


Q ss_pred             ccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      ..+++|+.|+++++ .++.++.     .+++|+.|++++| +++.+|..+..+++|+.|++++|
T Consensus       238 ~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          238 VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGN  294 (622)
T ss_dssp             CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSC
T ss_pred             CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCC
Confidence            24689999999986 6776655     3789999999877 78889988899999999999999

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.57  E-value=3.6e-14  Score=140.13  Aligned_cols=229  Identities=17%  Similarity=0.123  Sum_probs=163.3

Q ss_pred             hhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceec
Q 038945           41 CYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVL  120 (363)
Q Consensus        41 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~  120 (363)
                      .+..+..+++|++|+++++. ++.++...    ..+ +|++|++.+|. +.. .|.   ..+++|++|+++++......+
T Consensus       274 ~~~~~~~l~~L~~L~l~~~~-l~~l~~~~----~~~-~L~~L~l~~n~-~~~-l~~---~~l~~L~~L~l~~n~~~~~~~  342 (570)
T 2z63_A          274 IIDLFNCLTNVSSFSLVSVT-IERVKDFS----YNF-GWQHLELVNCK-FGQ-FPT---LKLKSLKRLTFTSNKGGNAFS  342 (570)
T ss_dssp             STTTTGGGTTCSEEEEESCE-ECSCCBCC----SCC-CCSEEEEESCB-CSS-CCB---CBCSSCCEEEEESCBSCCBCC
T ss_pred             chhhhcCcCcccEEEecCcc-chhhhhhh----ccC-CccEEeeccCc-ccc-cCc---ccccccCEEeCcCCccccccc
Confidence            34556667889999999886 77766555    456 99999999884 443 452   468899999998876433222


Q ss_pred             ccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCcc
Q 038945          121 HLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLK  200 (363)
Q Consensus       121 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~  200 (363)
                                  ...+++|+.|+++++. +....                                 ..+..+..+++|+
T Consensus       343 ------------~~~~~~L~~L~l~~n~-l~~~~---------------------------------~~~~~~~~~~~L~  376 (570)
T 2z63_A          343 ------------EVDLPSLEFLDLSRNG-LSFKG---------------------------------CCSQSDFGTTSLK  376 (570)
T ss_dssp             ------------CCBCTTCCEEECCSSC-CBEEE---------------------------------EEEHHHHTCSCCC
T ss_pred             ------------cccCCCCCEEeCcCCc-cCccc---------------------------------cccccccccCccC
Confidence                        1368889999998763 22210                                 0012345568999


Q ss_pred             EEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccc
Q 038945          201 SLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRK  280 (363)
Q Consensus       201 ~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~  280 (363)
                      .|++++|. +..++..+..+++|++|+++++. +...+....+..+++|+.|++++|......        ...+..+++
T Consensus       377 ~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~  446 (570)
T 2z63_A          377 YLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAF--------NGIFNGLSS  446 (570)
T ss_dssp             EEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECC--------TTTTTTCTT
T ss_pred             EEECCCCc-cccccccccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccc--------hhhhhcCCc
Confidence            99999986 44454457789999999999974 444433334678999999999998643221        223567899


Q ss_pred             cceecccccccc-cccCCCCcccCCCCccEEeeccCCCcccc-cCCCcCCCCcceeecccC
Q 038945          281 LEYLGLDCLPSL-TSFCLGNYALEFPSLEHVVVRQCPTMKIF-SQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       281 L~~L~l~~c~~L-~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~i~~~  339 (363)
                      |++|++++|.-. ..++..  +..+++|++|++++| .++.+ |..+..+++|+.|++++|
T Consensus       447 L~~L~l~~n~l~~~~~p~~--~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n  504 (570)
T 2z63_A          447 LEVLKMAGNSFQENFLPDI--FTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN  504 (570)
T ss_dssp             CCEEECTTCEEGGGEECSC--CTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CcEEECcCCcCccccchhh--hhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC
Confidence            999999998533 235544  777999999999888 55555 677889999999999998

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.56  E-value=6e-14  Score=123.17  Aligned_cols=65  Identities=17%  Similarity=0.207  Sum_probs=34.1

Q ss_pred             ccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCccee
Q 038945           50 DIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEV  119 (363)
Q Consensus        50 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~  119 (363)
                      +|++|+++++. ++.++... +  ..+++|++|+++++..+....+. .+..+++|++|++++|..+..+
T Consensus        32 ~l~~L~l~~n~-l~~i~~~~-~--~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i   96 (239)
T 2xwt_C           32 STQTLKLIETH-LRTIPSHA-F--SNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYI   96 (239)
T ss_dssp             TCCEEEEESCC-CSEECTTT-T--TTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEE
T ss_pred             cccEEEEeCCc-ceEECHHH-c--cCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEc
Confidence            56666666655 55544322 1  34566666666665434433322 2555666666666654444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.56  E-value=5.7e-14  Score=126.64  Aligned_cols=214  Identities=15%  Similarity=0.097  Sum_probs=138.3

Q ss_pred             hhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcc
Q 038945           38 IQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLE  117 (363)
Q Consensus        38 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~  117 (363)
                      +..+|..+  .++|++|+++++. ++.++... +  ..+++|++|+++++ .+....+.. +..+++|++|+++++..+.
T Consensus        23 l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~-~--~~~~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~~l~   94 (285)
T 1ozn_A           23 LQAVPVGI--PAASQRIFLHGNR-ISHVPAAS-F--RACRNLTILWLHSN-VLARIDAAA-FTGLALLEQLDLSDNAQLR   94 (285)
T ss_dssp             CSSCCTTC--CTTCSEEECTTSC-CCEECTTT-T--TTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSCTTCC
T ss_pred             cccCCcCC--CCCceEEEeeCCc-CCccCHHH-c--ccCCCCCEEECCCC-ccceeCHhh-cCCccCCCEEeCCCCCCcc
Confidence            33444433  3678888888886 77655332 1  46888999998887 566544544 7788889999988876455


Q ss_pred             eecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCC
Q 038945          118 EVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFA  197 (363)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~  197 (363)
                      .+...         ....+++|+.|+++++. +..+.                                   +..+..++
T Consensus        95 ~~~~~---------~~~~l~~L~~L~l~~n~-l~~~~-----------------------------------~~~~~~l~  129 (285)
T 1ozn_A           95 SVDPA---------TFHGLGRLHTLHLDRCG-LQELG-----------------------------------PGLFRGLA  129 (285)
T ss_dssp             CCCTT---------TTTTCTTCCEEECTTSC-CCCCC-----------------------------------TTTTTTCT
T ss_pred             ccCHH---------HhcCCcCCCEEECCCCc-CCEEC-----------------------------------HhHhhCCc
Confidence            54211         13357788888888763 22211                                   22345568


Q ss_pred             CccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccc
Q 038945          198 NLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIV  277 (363)
Q Consensus       198 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  277 (363)
                      +|+.|+++++..-...+..+..+++|++|+++++ .++.++.. .+..+++|+.|+++++.. ..+       ....+..
T Consensus       130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~l-~~~-------~~~~~~~  199 (285)
T 1ozn_A          130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPER-AFRGLHSLDRLLLHQNRV-AHV-------HPHAFRD  199 (285)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSSCC-CEE-------CTTTTTT
T ss_pred             CCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHH-HhcCccccCEEECCCCcc-ccc-------CHhHccC
Confidence            8888888887543322334667888888888886 45555532 355778888888888753 222       1223456


Q ss_pred             ccccceecccccccccccCCCCcccCCCCccEEeeccCC
Q 038945          278 FRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP  316 (363)
Q Consensus       278 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~  316 (363)
                      +++|+.|+++++ .++.++... +..+++|++|++++++
T Consensus       200 l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          200 LGRLMTLYLFAN-NLSALPTEA-LAPLRALQYLRLNDNP  236 (285)
T ss_dssp             CTTCCEEECCSS-CCSCCCHHH-HTTCTTCCEEECCSSC
T ss_pred             cccccEeeCCCC-cCCcCCHHH-cccCcccCEEeccCCC
Confidence            788888888886 555554322 4567888888887764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.56  E-value=1.1e-14  Score=141.39  Aligned_cols=238  Identities=13%  Similarity=0.103  Sum_probs=171.0

Q ss_pred             ccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCC
Q 038945            9 LSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCK   88 (363)
Q Consensus         9 ~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~   88 (363)
                      ..+|+|++|+++.          ..+...   .|..+..+++|++|+++++. +...+. .    ..+++|++|++++| 
T Consensus        31 ~~~~~L~~L~Ls~----------n~l~~~---~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l----~~l~~L~~L~Ls~N-   90 (487)
T 3oja_A           31 QSAWNVKELDLSG----------NPLSQI---SAADLAPFTKLELLNLSSNV-LYETLD-L----ESLSTLRTLDLNNN-   90 (487)
T ss_dssp             TTGGGCCEEECCS----------SCCCCC---CGGGGTTCTTCCEEECTTSC-CEEEEE-C----TTCTTCCEEECCSS-
T ss_pred             ccCCCccEEEeeC----------CcCCCC---CHHHHhCCCCCCEEEeeCCC-CCCCcc-c----ccCCCCCEEEecCC-
Confidence            4566999999992          222221   23567788999999999997 765433 3    58999999999998 


Q ss_pred             CCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhcc
Q 038945           89 NMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNF  168 (363)
Q Consensus        89 ~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~  168 (363)
                      .+....+      .++|++|++++|. +..++            ...+++|+.|+++++. +..+               
T Consensus        91 ~l~~l~~------~~~L~~L~L~~N~-l~~~~------------~~~l~~L~~L~L~~N~-l~~~---------------  135 (487)
T 3oja_A           91 YVQELLV------GPSIETLHAANNN-ISRVS------------CSRGQGKKNIYLANNK-ITML---------------  135 (487)
T ss_dssp             EEEEEEE------CTTCCEEECCSSC-CCCEE------------ECCCSSCEEEECCSSC-CCSG---------------
T ss_pred             cCCCCCC------CCCcCEEECcCCc-CCCCC------------ccccCCCCEEECCCCC-CCCC---------------
Confidence            5665333      4899999999875 54443            2357899999998764 3222               


Q ss_pred             ccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCccccccccc-CCCCCCEEeeccCcCccccCchhhhhhcc
Q 038945          169 IRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASC-YLENLATLEVSKCHGLINLLTLSTSESLV  247 (363)
Q Consensus       169 ~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~  247 (363)
                                          .+..+..+++|+.|+++++..-...+..+. .+++|++|+++++. ++.++..   ..++
T Consensus       136 --------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~---~~l~  191 (487)
T 3oja_A          136 --------------------RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ---VVFA  191 (487)
T ss_dssp             --------------------GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC---CCCT
T ss_pred             --------------------CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccccccc---ccCC
Confidence                                122355679999999999875554555554 68999999999974 5555432   3589


Q ss_pred             ccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCc-ccccCCCc
Q 038945          248 NLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTM-KIFSQGVV  326 (363)
Q Consensus       248 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~  326 (363)
                      +|+.|+++++. +..++        +.+..+++|+.|+++++ .+..++..  ...+++|+.|++++++-. ..+|..+.
T Consensus       192 ~L~~L~Ls~N~-l~~~~--------~~~~~l~~L~~L~Ls~N-~l~~lp~~--l~~l~~L~~L~l~~N~l~c~~~~~~~~  259 (487)
T 3oja_A          192 KLKTLDLSSNK-LAFMG--------PEFQSAAGVTWISLRNN-KLVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (487)
T ss_dssp             TCCEEECCSSC-CCEEC--------GGGGGGTTCSEEECTTS-CCCEECTT--CCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred             CCCEEECCCCC-CCCCC--------HhHcCCCCccEEEecCC-cCcccchh--hccCCCCCEEEcCCCCCcCcchHHHHH
Confidence            99999999975 33322        12557899999999996 56777765  677899999999888654 25556666


Q ss_pred             CCCCcceeecc
Q 038945          327 DAPKLNKVKPT  337 (363)
Q Consensus       327 ~~~~L~~L~i~  337 (363)
                      .+++|+.+++.
T Consensus       260 ~l~~L~~l~~~  270 (487)
T 3oja_A          260 KNQRVQTVAKQ  270 (487)
T ss_dssp             TCHHHHHHHHH
T ss_pred             hCCCCcEEecc
Confidence            78888888874

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.55  E-value=2.5e-14  Score=133.05  Aligned_cols=238  Identities=17%  Similarity=0.125  Sum_probs=156.7

Q ss_pred             cccCCCceeEEEeeecccceeeeccCCCchhhhh-hhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecC
Q 038945            8 ILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKC-YIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDD   86 (363)
Q Consensus         8 ~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~   86 (363)
                      +..+++|++|+++.              ..+..+ +..+.++++|++|+++++. ++.++...   ...+++|++|++++
T Consensus        72 ~~~l~~L~~L~L~~--------------n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~L~~  133 (353)
T 2z80_A           72 LQRCVNLQALVLTS--------------NGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSW---FKPLSSLTFLNLLG  133 (353)
T ss_dssp             TTTCTTCCEEECTT--------------SCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHH---HTTCTTCSEEECTT
T ss_pred             hccCCCCCEEECCC--------------CccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhH---hCCCccCCEEECCC
Confidence            45566666666651              122233 3446678999999999987 87766542   14799999999999


Q ss_pred             CCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhh
Q 038945           87 CKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLEC  166 (363)
Q Consensus        87 c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~  166 (363)
                      + .+....+...+..+++|++|+++++..+..++..         ....+++|+.|+++++. +..+             
T Consensus       134 n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---------~~~~l~~L~~L~l~~n~-l~~~-------------  189 (353)
T 2z80_A          134 N-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK---------DFAGLTFLEELEIDASD-LQSY-------------  189 (353)
T ss_dssp             C-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---------TTTTCCEEEEEEEEETT-CCEE-------------
T ss_pred             C-CCcccCchhhhccCCCCcEEECCCCccccccCHH---------HccCCCCCCEEECCCCC-cCcc-------------
Confidence            8 5565333144888999999999998666655321         13467899999998764 3222             


Q ss_pred             ccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCccccccc-ccCCCCCCEEeeccCcCccccCchh--hh
Q 038945          167 NFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPA-SCYLENLATLEVSKCHGLINLLTLS--TS  243 (363)
Q Consensus       167 ~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~--~~  243 (363)
                                            .+..+..+++|+.|+++++.. ..++.. ...+++|+.|+++++. ++.++...  ..
T Consensus       190 ----------------------~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~  245 (353)
T 2z80_A          190 ----------------------EPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTD-LDTFHFSELSTG  245 (353)
T ss_dssp             ----------------------CTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCB-CTTCCCC-----
T ss_pred             ----------------------CHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCc-cccccccccccc
Confidence                                  123456678999999999863 444432 3358999999999873 44443221  12


Q ss_pred             hhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCC
Q 038945          244 ESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPT  317 (363)
Q Consensus       244 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~  317 (363)
                      ...+.++.+++.++..-......    ..+.+..+++|+.|+++++ .++.++... +..+++|++|++++++-
T Consensus       246 ~~~~~l~~l~L~~~~l~~~~l~~----l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~-~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          246 ETNSLIKKFTFRNVKITDESLFQ----VMKLLNQISGLLELEFSRN-QLKSVPDGI-FDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             -CCCCCCEEEEESCBCCHHHHHH----HHHHHHTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSCB
T ss_pred             cccchhhccccccccccCcchhh----hHHHHhcccCCCEEECCCC-CCCccCHHH-HhcCCCCCEEEeeCCCc
Confidence            34567888888776422211000    1122456889999999986 677777652 36789999999988853

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.55  E-value=1.4e-13  Score=142.50  Aligned_cols=106  Identities=17%  Similarity=0.244  Sum_probs=75.8

Q ss_pred             CCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCc
Q 038945          221 ENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNY  300 (363)
Q Consensus       221 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~  300 (363)
                      ++|+.|+++++. +..++. ..+..+++|+.|+++++.. ..+       ....+..+++|++|+++++ .+..+.... 
T Consensus       266 ~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~i-~~~-------~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-  333 (844)
T 3j0a_A          266 SSVRHLDLSHGF-VFSLNS-RVFETLKDLKVLNLAYNKI-NKI-------ADEAFYGLDNLQVLNLSYN-LLGELYSSN-  333 (844)
T ss_dssp             SCCCEEECTTCC-CCEECS-CCSSSCCCCCEEEEESCCC-CEE-------CTTTTTTCSSCCEEEEESC-CCSCCCSCS-
T ss_pred             CCccEEECCCCc-ccccCh-hhhhcCCCCCEEECCCCcC-CCC-------ChHHhcCCCCCCEEECCCC-CCCccCHHH-
Confidence            678888888864 444332 2356788999999988753 222       1223567889999999986 455553332 


Q ss_pred             ccCCCCccEEeeccCCCcccccC-CCcCCCCcceeecccC
Q 038945          301 ALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPKLNKVKPTEE  339 (363)
Q Consensus       301 ~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~i~~~  339 (363)
                      +..+++|+.|+++++ .+..++. .+..+++|+.|++++|
T Consensus       334 ~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          334 FYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN  372 (844)
T ss_dssp             CSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC
T ss_pred             hcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC
Confidence            677899999999887 6666665 4568999999999998

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.54  E-value=4.5e-14  Score=131.32  Aligned_cols=235  Identities=14%  Similarity=0.144  Sum_probs=156.1

Q ss_pred             hhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCc
Q 038945           37 TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSL  116 (363)
Q Consensus        37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l  116 (363)
                      .+..+|..+  .+++++|+|+++. ++.++.+. +  ..+++|++|+++++.... .+|...+.++++|+++.+.++.++
T Consensus        20 ~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~-f--~~l~~L~~L~Ls~N~i~~-~i~~~~f~~L~~l~~~l~~~~N~l   92 (350)
T 4ay9_X           20 KVTEIPSDL--PRNAIELRFVLTK-LRVIQKGA-F--SGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIEKANNL   92 (350)
T ss_dssp             TCCSCCTTC--CTTCSEEEEESCC-CSEECTTS-S--TTCTTCCEEEEECCTTCC-EECTTSBCSCTTCCEEEEEEETTC
T ss_pred             CCCccCcCc--CCCCCEEEccCCc-CCCcCHHH-H--cCCCCCCEEECcCCCCCC-ccChhHhhcchhhhhhhcccCCcc
Confidence            344556554  3679999999987 88877543 1  478999999999985444 455555788888888777777777


Q ss_pred             ceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccC
Q 038945          117 EEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVF  196 (363)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l  196 (363)
                      ..++..         ....+++|+.|+++++. ++.+....                                   ....
T Consensus        93 ~~l~~~---------~f~~l~~L~~L~l~~n~-l~~~~~~~-----------------------------------~~~~  127 (350)
T 4ay9_X           93 LYINPE---------AFQNLPNLQYLLISNTG-IKHLPDVH-----------------------------------KIHS  127 (350)
T ss_dssp             CEECTT---------SBCCCTTCCEEEEEEEC-CSSCCCCT-----------------------------------TCCB
T ss_pred             cccCch---------hhhhccccccccccccc-cccCCchh-----------------------------------hccc
Confidence            766421         13467888999888753 33321111                                   1122


Q ss_pred             CCccEEEeccCcCccccccc-ccCC-CCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccc
Q 038945          197 ANLKSLEISECSQLQKLVPA-SCYL-ENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAED  274 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l~~~-~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  274 (363)
                      ..+..+++.++..+..++.. +..+ ..++.|+++++ .++.++..  ....++|+.+++.++..++.+..       +.
T Consensus       128 ~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~--~f~~~~L~~l~l~~~n~l~~i~~-------~~  197 (350)
T 4ay9_X          128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNS--AFNGTQLDELNLSDNNNLEELPN-------DV  197 (350)
T ss_dssp             SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTT--SSTTEEEEEEECTTCTTCCCCCT-------TT
T ss_pred             chhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChh--hccccchhHHhhccCCcccCCCH-------HH
Confidence            45677777777666666542 2222 35777888764 56666543  22456788888887777766532       23


Q ss_pred             cccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          275 CIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       275 ~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      +..+++|+.|+++++ .++.++.+    .+.+|++|.+.++.+++.+|. +..+++|+.+++..+
T Consensus       198 f~~l~~L~~LdLs~N-~l~~lp~~----~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          198 FHGASGPVILDISRT-RIHSLPSY----GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             TTTEECCSEEECTTS-CCCCCCSS----SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred             hccCcccchhhcCCC-CcCccChh----hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence            456788888888875 67777654    267788888888888888873 667888888887654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.54  E-value=2.1e-13  Score=123.50  Aligned_cols=200  Identities=17%  Similarity=0.117  Sum_probs=113.6

Q ss_pred             cccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccc
Q 038945           45 MIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEE  124 (363)
Q Consensus        45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~  124 (363)
                      +..++++++++++++. ++.+|...      .++++.|+++++ ++....+. .+..+++|++|+++++. +..++..  
T Consensus         6 ~~~l~~l~~l~~~~~~-l~~ip~~~------~~~l~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~--   73 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRN-LTALPPDL------PKDTTILHLSEN-LLYTFSLA-TLMPYTRLTQLNLDRAE-LTKLQVD--   73 (290)
T ss_dssp             EECSTTCCEEECTTSC-CSSCCSCC------CTTCCEEECTTS-CCSEEEGG-GGTTCTTCCEEECTTSC-CCEEECC--
T ss_pred             ccccCCccEEECCCCC-CCcCCCCC------CCCCCEEEcCCC-cCCccCHH-HhhcCCCCCEEECCCCc-cCcccCC--
Confidence            3456778888888765 77655433      367888888887 45554443 37778888888888754 4444321  


Q ss_pred             ccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEe
Q 038945          125 LNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEI  204 (363)
Q Consensus       125 ~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l  204 (363)
                               ..+++|+.|+++++. +                                                      
T Consensus        74 ---------~~l~~L~~L~Ls~N~-l------------------------------------------------------   89 (290)
T 1p9a_G           74 ---------GTLPVLGTLDLSHNQ-L------------------------------------------------------   89 (290)
T ss_dssp             ---------SCCTTCCEEECCSSC-C------------------------------------------------------
T ss_pred             ---------CCCCcCCEEECCCCc-C------------------------------------------------------
Confidence                     245666666666431 2                                                      


Q ss_pred             ccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccccccccee
Q 038945          205 SECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYL  284 (363)
Q Consensus       205 ~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L  284 (363)
                            ..++..+..+++|++|+++++ .++.++. ..+..+++|+.|+++++. ++.+.       ...+..+++|+.|
T Consensus        90 ------~~l~~~~~~l~~L~~L~l~~N-~l~~l~~-~~~~~l~~L~~L~L~~N~-l~~~~-------~~~~~~l~~L~~L  153 (290)
T 1p9a_G           90 ------QSLPLLGQTLPALTVLDVSFN-RLTSLPL-GALRGLGELQELYLKGNE-LKTLP-------PGLLTPTPKLEKL  153 (290)
T ss_dssp             ------SSCCCCTTTCTTCCEEECCSS-CCCCCCS-STTTTCTTCCEEECTTSC-CCCCC-------TTTTTTCTTCCEE
T ss_pred             ------CcCchhhccCCCCCEEECCCC-cCcccCH-HHHcCCCCCCEEECCCCC-CCccC-------hhhcccccCCCEE
Confidence                  222233334445555555443 2333332 123445555555555543 22211       1112345666666


Q ss_pred             cccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          285 GLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       285 ~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      +++++ .++.++.+. +..+++|++|+++++ .++.+|.++...++|+.+++++|
T Consensus       154 ~L~~N-~l~~l~~~~-~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          154 SLANN-NLTELPAGL-LNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             ECTTS-CCSCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSC
T ss_pred             ECCCC-cCCccCHHH-hcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCC
Confidence            66654 455555442 345677777777554 66677777777777777777777

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.54  E-value=6.2e-14  Score=123.09  Aligned_cols=201  Identities=13%  Similarity=0.075  Sum_probs=149.8

Q ss_pred             CCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCc
Q 038945           77 NNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNF  156 (363)
Q Consensus        77 ~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~  156 (363)
                      ++|++|+++++ +++...+ ..++.+++|++|+++++..+..++...         ...+++|+.|++++|.+++.+.. 
T Consensus        31 ~~l~~L~l~~n-~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~~---------f~~l~~L~~L~l~~~n~l~~i~~-   98 (239)
T 2xwt_C           31 PSTQTLKLIET-HLRTIPS-HAFSNLPNISRIYVSIDVTLQQLESHS---------FYNLSKVTHIEIRNTRNLTYIDP-   98 (239)
T ss_dssp             TTCCEEEEESC-CCSEECT-TTTTTCTTCCEEEEECCSSCCEECTTT---------EESCTTCCEEEEEEETTCCEECT-
T ss_pred             CcccEEEEeCC-cceEECH-HHccCCCCCcEEeCCCCCCcceeCHhH---------cCCCcCCcEEECCCCCCeeEcCH-
Confidence            48999999998 5665444 348889999999999986576665311         23678999999998777766521 


Q ss_pred             ccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCC---EEeeccCcC
Q 038945          157 TGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLA---TLEVSKCHG  233 (363)
Q Consensus       157 ~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~---~L~l~~c~~  233 (363)
                                                        ..+..+++|+.|+++++. +..+|. +..+++|+   .|++++++.
T Consensus        99 ----------------------------------~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~  142 (239)
T 2xwt_C           99 ----------------------------------DALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPY  142 (239)
T ss_dssp             ----------------------------------TSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTT
T ss_pred             ----------------------------------HHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcc
Confidence                                              235567899999999986 445654 66777887   999999877


Q ss_pred             ccccCchhhhhhccccC-eEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCC-CCccEEe
Q 038945          234 LINLLTLSTSESLVNLE-RMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEF-PSLEHVV  311 (363)
Q Consensus       234 l~~~~~~~~~~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~-~~L~~L~  311 (363)
                      ++.++.. .+..+++|+ .|+++++. ++.+...       .+.. ++|+.|++++++.++.++... +..+ ++|++|+
T Consensus       143 l~~i~~~-~~~~l~~L~~~L~l~~n~-l~~i~~~-------~~~~-~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~  211 (239)
T 2xwt_C          143 MTSIPVN-AFQGLCNETLTLKLYNNG-FTSVQGY-------AFNG-TKLDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLD  211 (239)
T ss_dssp             CCEECTT-TTTTTBSSEEEEECCSCC-CCEECTT-------TTTT-CEEEEEECTTCTTCCEECTTT-TTTCSBCCSEEE
T ss_pred             hhhcCcc-cccchhcceeEEEcCCCC-CcccCHh-------hcCC-CCCCEEEcCCCCCcccCCHHH-hhccccCCcEEE
Confidence            8887653 356889999 99998875 3333211       1223 789999999987788776653 5567 8999999


Q ss_pred             eccCCCcccccCCCcCCCCcceeecccC
Q 038945          312 VRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       312 l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      ++++ .++.+|..  .+++|+.|++.++
T Consensus       212 l~~N-~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          212 VSQT-SVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CTTC-CCCCCCCT--TCTTCSEEECTTC
T ss_pred             CCCC-ccccCChh--HhccCceeeccCc
Confidence            9775 77777766  7889999999876

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.54  E-value=6.3e-13  Score=119.18  Aligned_cols=110  Identities=20%  Similarity=0.238  Sum_probs=58.8

Q ss_pred             ccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccc----eecccccccc
Q 038945          217 SCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLE----YLGLDCLPSL  292 (363)
Q Consensus       217 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~----~L~l~~c~~L  292 (363)
                      +..+++|++|+++++. ++.+.....+..+++|+.|++++|.. +.+.       ...+..+++|+    .|+++++ .+
T Consensus       120 ~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l-~~~~-------~~~~~~l~~L~~l~l~L~ls~n-~l  189 (276)
T 2z62_A          120 IGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKI-QSIY-------CTDLRVLHQMPLLNLSLDLSLN-PM  189 (276)
T ss_dssp             CTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCC-CEEC-------GGGGHHHHTCTTCCEEEECCSS-CC
T ss_pred             cccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCC-CcCC-------HHHhhhhhhccccceeeecCCC-cc
Confidence            3445555555555542 32211112245556666666665532 2111       01122233444    5666664 45


Q ss_pred             cccCCCCcccCCCCccEEeeccCCCcccccCCC-cCCCCcceeecccC
Q 038945          293 TSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE  339 (363)
Q Consensus       293 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~i~~~  339 (363)
                      +.++..  .....+|++|+++++ .++.++... ..+++|+.|++++|
T Consensus       190 ~~~~~~--~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          190 NFIQPG--AFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             CEECTT--SSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             cccCcc--ccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCC
Confidence            555544  444457888888666 466676654 47888888888888

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.53  E-value=2e-15  Score=149.92  Aligned_cols=135  Identities=13%  Similarity=0.136  Sum_probs=78.9

Q ss_pred             cCCCccEEEeccCcCccc-cccccc-CCCCCCEEeecc---CcCccccCc----hhhhhhccccCeEeeccCcc-hhhhh
Q 038945          195 VFANLKSLEISECSQLQK-LVPASC-YLENLATLEVSK---CHGLINLLT----LSTSESLVNLERMKMSDCKM-MEEII  264 (363)
Q Consensus       195 ~l~~L~~L~l~~c~~l~~-l~~~~~-~~~~L~~L~l~~---c~~l~~~~~----~~~~~~l~~L~~L~l~~c~~-l~~~~  264 (363)
                      .+++|++|+++.+ .+.. .+..+. .+++|++|++++   |+.++..|.    ...+..+++|++|++++|.. +.+..
T Consensus       376 ~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~  454 (592)
T 3ogk_B          376 GCQELEYMAVYVS-DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG  454 (592)
T ss_dssp             HCTTCSEEEEEES-CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred             hCccCeEEEeecC-CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence            3566666666332 2221 112222 367777777763   455555321    12345677888888876653 22110


Q ss_pred             ccCcccccccc-ccccccceecccccccccccCCCCcccCCCCccEEeeccCCCccc--ccCCCcCCCCcceeecccC
Q 038945          265 QSQVGEEAEDC-IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI--FSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       265 ~~~~~~~~~~~-~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~~L~~L~i~~~  339 (363)
                             ...+ ..+++|++|++++|. +.+.........+++|++|++++|+ ++.  ++.....+++|+.|++++|
T Consensus       455 -------~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n  523 (592)
T 3ogk_B          455 -------LSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGY  523 (592)
T ss_dssp             -------HHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESC
T ss_pred             -------HHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCC
Confidence                   0011 237889999998764 4432211124568999999999997 553  3334457899999999998

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.52  E-value=8.9e-15  Score=133.88  Aligned_cols=229  Identities=19%  Similarity=0.243  Sum_probs=152.3

Q ss_pred             cceEecccCcCcccc--cccCc---CCCCCCCCccEEEecCCCCCcccCchhHH-hhcCCCCEEEEccCCCcceeccc-c
Q 038945           51 IENIKLSLFPRLKEI--WHNQA---LPVSFFNNLRHLVLDDCKNMSSAIPANLI-RCLNNLASLEVRNCDSLEEVLHL-E  123 (363)
Q Consensus        51 L~~L~l~~~~~l~~~--~~~~~---l~~~~l~~L~~L~l~~c~~l~~~~p~~~l-~~l~~L~~L~l~~~~~l~~~~~~-~  123 (363)
                      |++|+++++. ++..  +....   +....+++|++|++++| ++.+..|..++ ..+++|++|+++++. +..++.. .
T Consensus        65 L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~  141 (312)
T 1wwl_A           65 IKSLSLKRLT-VRAARIPSRILFGALRVLGISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLA  141 (312)
T ss_dssp             HHHCCCCEEE-EEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHH
T ss_pred             Hhhccccccc-ccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHH
Confidence            7888888765 5432  11110   00014789999999988 46655665532 788999999998864 4443311 1


Q ss_pred             cccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEE
Q 038945          124 ELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLE  203 (363)
Q Consensus       124 ~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~  203 (363)
                      ...      ....++|+.|+++++. +..+                                   .+..+..+++|+.|+
T Consensus       142 ~l~------~~~~~~L~~L~L~~N~-l~~~-----------------------------------~~~~~~~l~~L~~L~  179 (312)
T 1wwl_A          142 ELQ------QWLKPGLKVLSIAQAH-SLNF-----------------------------------SCEQVRVFPALSTLD  179 (312)
T ss_dssp             HHH------TTCCTTCCEEEEESCS-CCCC-----------------------------------CTTTCCCCSSCCEEE
T ss_pred             HHH------HhhcCCCcEEEeeCCC-Cccc-----------------------------------hHHHhccCCCCCEEE
Confidence            100      0123788999988764 3222                                   123466779999999


Q ss_pred             eccCcCccc--ccccc--cCCCCCCEEeeccCcCccccCc--hhhhhhccccCeEeeccCcchhhhhccCcccccccccc
Q 038945          204 ISECSQLQK--LVPAS--CYLENLATLEVSKCHGLINLLT--LSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIV  277 (363)
Q Consensus       204 l~~c~~l~~--l~~~~--~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  277 (363)
                      ++++.....  ++..+  ..+++|++|+++++ .++.++.  ..++..+++|+.|+++++.. ....      .......
T Consensus       180 Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~------~~~~~~~  251 (312)
T 1wwl_A          180 LSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSL-RDAA------GAPSCDW  251 (312)
T ss_dssp             CCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCC-CSSC------CCSCCCC
T ss_pred             CCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcC-Cccc------chhhhhh
Confidence            999875443  22333  67899999999997 4553322  12345779999999999853 3211      1122345


Q ss_pred             ccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          278 FRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       278 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      +++|++|+++++ .++.++..  ..  ++|++|+++++ +++.+|. +..+++|+.|++++|
T Consensus       252 l~~L~~L~Ls~N-~l~~ip~~--~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          252 PSQLNSLNLSFT-GLKQVPKG--LP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGN  306 (312)
T ss_dssp             CTTCCEEECTTS-CCSSCCSS--CC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTC
T ss_pred             cCCCCEEECCCC-ccChhhhh--cc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCC
Confidence            789999999996 56777665  32  89999999776 7887766 789999999999998

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.51  E-value=3.5e-15  Score=148.15  Aligned_cols=148  Identities=12%  Similarity=0.008  Sum_probs=79.3

Q ss_pred             hhhhhhhcccccc-cCCCccEEEec-----cCcCcccccc------cccCCCCCCEEeeccCcCccccCchhhhhhcccc
Q 038945          182 LQHLLKENAESNK-VFANLKSLEIS-----ECSQLQKLVP------ASCYLENLATLEVSKCHGLINLLTLSTSESLVNL  249 (363)
Q Consensus       182 ~~~l~~~~~~~l~-~l~~L~~L~l~-----~c~~l~~l~~------~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L  249 (363)
                      +.++++.....+. .+++|+.|+++     +|..++..+.      .+..+++|+.|++++  .++......+...+++|
T Consensus       381 ~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L  458 (594)
T 2p1m_B          381 CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKM  458 (594)
T ss_dssp             ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTC
T ss_pred             cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhc
Confidence            3344444444443 46777888877     4555553321      134567788888755  44443222233346778


Q ss_pred             CeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCC-cCC
Q 038945          250 ERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDA  328 (363)
Q Consensus       250 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~  328 (363)
                      +.|++++|......+..       ....+++|+.|++++|+. .+.........+++|++|++++|+........+ ..+
T Consensus       459 ~~L~L~~~~i~~~~~~~-------l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l  530 (594)
T 2p1m_B          459 EMLSVAFAGDSDLGMHH-------VLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKM  530 (594)
T ss_dssp             CEEEEESCCSSHHHHHH-------HHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHC
T ss_pred             cEeeccCCCCcHHHHHH-------HHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhC
Confidence            88888777632211110       013477888888888754 332221124457788888888886522111222 256


Q ss_pred             CCcceeecccC
Q 038945          329 PKLNKVKPTEE  339 (363)
Q Consensus       329 ~~L~~L~i~~~  339 (363)
                      |+|+...+.++
T Consensus       531 p~l~i~~~~~~  541 (594)
T 2p1m_B          531 PKLNVEVIDER  541 (594)
T ss_dssp             TTEEEEEECSS
T ss_pred             CCCEEEEecCC
Confidence            77765555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.49  E-value=3.6e-14  Score=133.66  Aligned_cols=261  Identities=13%  Similarity=0.054  Sum_probs=154.8

Q ss_pred             chhhhhhhccccccccceEecccCcCcccccccC-cCCCCCCCCccEEEecCC--CCCcccCchhH------HhhcCCCC
Q 038945           36 STIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQ-ALPVSFFNNLRHLVLDDC--KNMSSAIPANL------IRCLNNLA  106 (363)
Q Consensus        36 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~l~~~~l~~L~~L~l~~c--~~l~~~~p~~~------l~~l~~L~  106 (363)
                      ..+..++..+..+++|++|++++|. +....... .-....+++|++|++++|  .++.+..|..+      +..+++|+
T Consensus        19 ~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~   97 (386)
T 2ca6_A           19 EDEKSVFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH   97 (386)
T ss_dssp             HHHHTTSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred             HHHHHHHHHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence            3566677777788999999999986 65421110 000146899999999987  34444455543      36789999


Q ss_pred             EEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhh
Q 038945          107 SLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLL  186 (363)
Q Consensus       107 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~  186 (363)
                      +|+++++. +...... .    .......+++|+.|++++|. +...      ....+...           +..+....
T Consensus        98 ~L~Ls~n~-l~~~~~~-~----l~~~l~~~~~L~~L~L~~n~-l~~~------~~~~l~~~-----------l~~l~~~~  153 (386)
T 2ca6_A           98 TVRLSDNA-FGPTAQE-P----LIDFLSKHTPLEHLYLHNNG-LGPQ------AGAKIARA-----------LQELAVNK  153 (386)
T ss_dssp             EEECCSCC-CCTTTHH-H----HHHHHHHCTTCCEEECCSSC-CHHH------HHHHHHHH-----------HHHHHHHH
T ss_pred             EEECCCCc-CCHHHHH-H----HHHHHHhCCCCCEEECcCCC-CCHH------HHHHHHHH-----------HHHHhhhh
Confidence            99999875 3321000 0    00002357889999998874 2211      00000000           00000000


Q ss_pred             hhcccccccCCCccEEEeccCcCc-cccc---ccccCCCCCCEEeeccCcCccccC---chh-hhhhccccCeEeeccCc
Q 038945          187 KENAESNKVFANLKSLEISECSQL-QKLV---PASCYLENLATLEVSKCHGLINLL---TLS-TSESLVNLERMKMSDCK  258 (363)
Q Consensus       187 ~~~~~~l~~l~~L~~L~l~~c~~l-~~l~---~~~~~~~~L~~L~l~~c~~l~~~~---~~~-~~~~l~~L~~L~l~~c~  258 (363)
                         .  -...++|+.|++++|..- ..++   ..+..+++|++|++++| .++...   ... .+..+++|+.|++++|.
T Consensus       154 ---~--~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~  227 (386)
T 2ca6_A          154 ---K--AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT  227 (386)
T ss_dssp             ---H--HHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred             ---h--cccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC
Confidence               0  011178899999888643 2222   34456789999999887 344211   011 34578899999998886


Q ss_pred             ch----hhhhccCccccccccccccccceeccccccccccc-----CCCCcc--cCCCCccEEeeccCCCccc-----cc
Q 038945          259 MM----EEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSF-----CLGNYA--LEFPSLEHVVVRQCPTMKI-----FS  322 (363)
Q Consensus       259 ~l----~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~-----~~~~~~--~~~~~L~~L~l~~c~~l~~-----l~  322 (363)
                      .-    ..++.        .+..+++|++|++++|. +...     +..  .  ..+++|++|++++| .++.     +|
T Consensus       228 l~~~g~~~l~~--------~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~--l~~~~~~~L~~L~L~~n-~i~~~g~~~l~  295 (386)
T 2ca6_A          228 FTHLGSSALAI--------ALKSWPNLRELGLNDCL-LSARGAAAVVDA--FSKLENIGLQTLRLQYN-EIELDAVRTLK  295 (386)
T ss_dssp             CHHHHHHHHHH--------HGGGCTTCCEEECTTCC-CCHHHHHHHHHH--HHTCSSCCCCEEECCSS-CCBHHHHHHHH
T ss_pred             CCcHHHHHHHH--------HHccCCCcCEEECCCCC-CchhhHHHHHHH--HhhccCCCeEEEECcCC-cCCHHHHHHHH
Confidence            32    22221        24567889999998874 4332     111  2  23788999999777 4554     66


Q ss_pred             CCC-cCCCCcceeecccC
Q 038945          323 QGV-VDAPKLNKVKPTEE  339 (363)
Q Consensus       323 ~~~-~~~~~L~~L~i~~~  339 (363)
                      ..+ .++++|+.|++++|
T Consensus       296 ~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          296 TVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             HHHHHHCTTCCEEECTTS
T ss_pred             HHHHhcCCCceEEEccCC
Confidence            666 46889999999988

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.48  E-value=2.1e-14  Score=142.57  Aligned_cols=58  Identities=19%  Similarity=0.216  Sum_probs=29.3

Q ss_pred             cCCCccEEEeccCcCcccc--cccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeec
Q 038945          195 VFANLKSLEISECSQLQKL--VPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMS  255 (363)
Q Consensus       195 ~l~~L~~L~l~~c~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~  255 (363)
                      .+++|++|++++|. +...  ......+++|++|++++|  +.......+...+++|+.|++.
T Consensus       287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~  346 (594)
T 2p1m_B          287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVF  346 (594)
T ss_dssp             HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEE
T ss_pred             hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEe
Confidence            44667777776665 3321  112335666666666665  2221112223345666666663

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.47  E-value=8.4e-13  Score=127.05  Aligned_cols=70  Identities=14%  Similarity=0.042  Sum_probs=24.5

Q ss_pred             ccccceecccccccccccCCCCcccCCCCccEEeeccCCCcc--cccCCCcCC-------------CCcceeecccCCCC
Q 038945          278 FRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMK--IFSQGVVDA-------------PKLNKVKPTEEEDG  342 (363)
Q Consensus       278 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~--~l~~~~~~~-------------~~L~~L~i~~~~~~  342 (363)
                      +++|++|+++++ .++.++.     .+++|++|+++++.-..  .+|..+..+             ++|+.|++++|   
T Consensus       336 ~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N---  406 (454)
T 1jl5_A          336 PPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN---  406 (454)
T ss_dssp             CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred             CCcCCEEECCCC-ccccccc-----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC---
Confidence            456666666664 3444433     25677777776653222  345555544             67777777776   


Q ss_pred             CCccccCCcchHHHHH
Q 038945          343 DDEGCWEGNLNDTKKK  358 (363)
Q Consensus       343 ~~~~~~~~~~~~~~~~  358 (363)
                        .+.-.+.+|+.++.
T Consensus       407 --~l~~~~~iP~sl~~  420 (454)
T 1jl5_A          407 --PLREFPDIPESVED  420 (454)
T ss_dssp             ----------------
T ss_pred             --cCCccccchhhHhh
Confidence              33333345554443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.47  E-value=1.7e-13  Score=131.98  Aligned_cols=248  Identities=17%  Similarity=0.147  Sum_probs=134.7

Q ss_pred             ccccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcc-cccccCcCCCCCCCC-------
Q 038945            7 GILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLK-EIWHNQALPVSFFNN-------   78 (363)
Q Consensus         7 ~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~l~~~~l~~-------   78 (363)
                      ...+.+.|+.+.++              .+.+..+|.++..+++|++|+++++. +. .+|...    +.+.+       
T Consensus         6 ~~~~~~~L~~L~l~--------------~n~l~~iP~~i~~L~~L~~L~l~~n~-~~~~~p~~~----~~l~~L~~l~l~   66 (454)
T 1jl5_A            6 RNVSNTFLQEPLRH--------------SSNLTEMPVEAENVKSKTEYYNAWSE-WERNAPPGN----GEQREMAVSRLR   66 (454)
T ss_dssp             ------------------------------------------CCHHHHHHHHHH-HHHTSCTTS----CCCHHHHHHHHH
T ss_pred             cccccccchhhhcc--------------cCchhhCChhHhcccchhhhhccCCc-ccccCCccc----ccchhcchhhhh
Confidence            34456777777777              13345677778888888888888876 43 434433    34444       


Q ss_pred             ------ccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeeccccccccc
Q 038945           79 ------LRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKR  152 (363)
Q Consensus        79 ------L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~  152 (363)
                            +++|++++| ++++ .|.  +  .++|++|+++++. +..++.             .+++|+.|+++++ +++.
T Consensus        67 ~c~~~~l~~L~l~~~-~l~~-lp~--~--~~~L~~L~l~~n~-l~~lp~-------------~~~~L~~L~l~~n-~l~~  125 (454)
T 1jl5_A           67 DCLDRQAHELELNNL-GLSS-LPE--L--PPHLESLVASCNS-LTELPE-------------LPQSLKSLLVDNN-NLKA  125 (454)
T ss_dssp             HHHHHTCSEEECTTS-CCSC-CCS--C--CTTCSEEECCSSC-CSSCCC-------------CCTTCCEEECCSS-CCSC
T ss_pred             hhhccCCCEEEecCC-cccc-CCC--C--cCCCCEEEccCCc-CCcccc-------------ccCCCcEEECCCC-ccCc
Confidence                  477888877 4554 332  1  3678888887653 443331             2356777776654 2333


Q ss_pred             ccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCc
Q 038945          153 FCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCH  232 (363)
Q Consensus       153 l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~  232 (363)
                      +.... +.++.+.             + ...++.  ..+++..+++|+.|+++++. +..+|..   .++|++|+++++ 
T Consensus       126 l~~~~-~~L~~L~-------------L-~~n~l~--~lp~~~~l~~L~~L~l~~N~-l~~lp~~---~~~L~~L~L~~n-  183 (454)
T 1jl5_A          126 LSDLP-PLLEYLG-------------V-SNNQLE--KLPELQNSSFLKIIDVDNNS-LKKLPDL---PPSLEFIAAGNN-  183 (454)
T ss_dssp             CCSCC-TTCCEEE-------------C-CSSCCS--SCCCCTTCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-
T ss_pred             ccCCC-CCCCEEE-------------C-cCCCCC--CCcccCCCCCCCEEECCCCc-CcccCCC---cccccEEECcCC-
Confidence            21110 0111111             0 001111  12346777899999998885 4445443   458999999887 


Q ss_pred             CccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEee
Q 038945          233 GLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVV  312 (363)
Q Consensus       233 ~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l  312 (363)
                      .++.++.   ++.+++|+.|++++|.. ..+.           ...++|++|++++| .++.++.   +..+++|++|++
T Consensus       184 ~l~~l~~---~~~l~~L~~L~l~~N~l-~~l~-----------~~~~~L~~L~l~~n-~l~~lp~---~~~l~~L~~L~l  244 (454)
T 1jl5_A          184 QLEELPE---LQNLPFLTAIYADNNSL-KKLP-----------DLPLSLESIVAGNN-ILEELPE---LQNLPFLTTIYA  244 (454)
T ss_dssp             CCSSCCC---CTTCTTCCEEECCSSCC-SSCC-----------CCCTTCCEEECCSS-CCSSCCC---CTTCTTCCEEEC
T ss_pred             cCCcCcc---ccCCCCCCEEECCCCcC-CcCC-----------CCcCcccEEECcCC-cCCcccc---cCCCCCCCEEEC
Confidence            5555652   57889999999988752 2221           12358999999987 5666652   667899999999


Q ss_pred             ccCCCcccccCCCcCCCCcceeecccC
Q 038945          313 RQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       313 ~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      +++ +++.+|..   +++|+.|++++|
T Consensus       245 ~~N-~l~~l~~~---~~~L~~L~l~~N  267 (454)
T 1jl5_A          245 DNN-LLKTLPDL---PPSLEALNVRDN  267 (454)
T ss_dssp             CSS-CCSSCCSC---CTTCCEEECCSS
T ss_pred             CCC-cCCccccc---ccccCEEECCCC
Confidence            776 66666543   478888888887

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.46  E-value=9.3e-13  Score=122.38  Aligned_cols=225  Identities=14%  Similarity=0.108  Sum_probs=153.1

Q ss_pred             CCCceeEEEeeecccceeeeccCCCchhhhhhh-ccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCC
Q 038945           11 TPKLHKVQVTVKEEGELYHREGNLNSTIQKCYI-EMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKN   89 (363)
Q Consensus        11 ~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~   89 (363)
                      .+++++|+++              .+.+..+|. .+.++++|++|+|+++.-++.++...   ...+++++++...++.+
T Consensus        29 ~~~l~~L~Ls--------------~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~---f~~L~~l~~~l~~~~N~   91 (350)
T 4ay9_X           29 PRNAIELRFV--------------LTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV---FSNLPKLHEIRIEKANN   91 (350)
T ss_dssp             CTTCSEEEEE--------------SCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS---BCSCTTCCEEEEEEETT
T ss_pred             CCCCCEEEcc--------------CCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH---hhcchhhhhhhcccCCc
Confidence            4689999999              234555664 46778999999999997334444332   14678888877766667


Q ss_pred             CcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccc
Q 038945           90 MSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFI  169 (363)
Q Consensus        90 l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~  169 (363)
                      +....|. .++.+++|++|+++++. +..++...         .....++..+++.++.++..+....            
T Consensus        92 l~~l~~~-~f~~l~~L~~L~l~~n~-l~~~~~~~---------~~~~~~l~~l~l~~~~~i~~l~~~~------------  148 (350)
T 4ay9_X           92 LLYINPE-AFQNLPNLQYLLISNTG-IKHLPDVH---------KIHSLQKVLLDIQDNINIHTIERNS------------  148 (350)
T ss_dssp             CCEECTT-SBCCCTTCCEEEEEEEC-CSSCCCCT---------TCCBSSCEEEEEESCTTCCEECTTS------------
T ss_pred             ccccCch-hhhhccccccccccccc-cccCCchh---------hcccchhhhhhhccccccccccccc------------
Confidence            8765554 48899999999999864 55544321         1133456677777766666543221            


Q ss_pred             cchhhHHHHHHhhhhhhhhcccccccC-CCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccc
Q 038945          170 RIKSNLMTRLFALQHLLKENAESNKVF-ANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVN  248 (363)
Q Consensus       170 ~l~~~L~l~~~~~~~l~~~~~~~l~~l-~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~  248 (363)
                                             +..+ ..++.|+++++. ++.++.......+|+.|.+.++..++.++.. .+..+++
T Consensus       149 -----------------------f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~-~f~~l~~  203 (350)
T 4ay9_X          149 -----------------------FVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPND-VFHGASG  203 (350)
T ss_dssp             -----------------------STTSBSSCEEEECCSSC-CCEECTTSSTTEEEEEEECTTCTTCCCCCTT-TTTTEEC
T ss_pred             -----------------------hhhcchhhhhhcccccc-ccCCChhhccccchhHHhhccCCcccCCCHH-HhccCcc
Confidence                                   1112 467888888764 5666666556678888888888888888753 3568889


Q ss_pred             cCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeecc
Q 038945          249 LERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ  314 (363)
Q Consensus       249 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~  314 (363)
                      |+.|+++++. ++.++.          ..+.+|+.|.+.++.+++.++.   ...+++|+.+++.+
T Consensus       204 L~~LdLs~N~-l~~lp~----------~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          204 PVILDISRTR-IHSLPS----------YGLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY  255 (350)
T ss_dssp             CSEEECTTSC-CCCCCS----------SSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred             cchhhcCCCC-cCccCh----------hhhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence            9999998874 554432          2366777777777778887774   55688888888754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.45  E-value=6.8e-13  Score=121.13  Aligned_cols=189  Identities=19%  Similarity=0.222  Sum_probs=107.6

Q ss_pred             cccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccc
Q 038945           47 GFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELN  126 (363)
Q Consensus        47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~  126 (363)
                      .+++|++|+++++. ++.++ ..    ..+++|++|++++| ++....+   +..+++|++|+++++. +..++.     
T Consensus        39 ~l~~L~~L~l~~~~-i~~l~-~~----~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~-l~~~~~-----  102 (308)
T 1h6u_A           39 DLDGITTLSAFGTG-VTTIE-GV----QYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP-LKNVSA-----  102 (308)
T ss_dssp             HHHTCCEEECTTSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC-CSCCGG-----
T ss_pred             HcCCcCEEEeeCCC-ccCch-hh----hccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCc-CCCchh-----
Confidence            35667777777765 65543 22    35677777777766 4454333   6667777777777654 444321     


Q ss_pred             ccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEecc
Q 038945          127 ADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISE  206 (363)
Q Consensus       127 ~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~  206 (363)
                            ...+++|+.|+++++. ++.+                                     +.+..+++|+.|++++
T Consensus       103 ------~~~l~~L~~L~l~~n~-l~~~-------------------------------------~~l~~l~~L~~L~l~~  138 (308)
T 1h6u_A          103 ------IAGLQSIKTLDLTSTQ-ITDV-------------------------------------TPLAGLSNLQVLYLDL  138 (308)
T ss_dssp             ------GTTCTTCCEEECTTSC-CCCC-------------------------------------GGGTTCTTCCEEECCS
T ss_pred             ------hcCCCCCCEEECCCCC-CCCc-------------------------------------hhhcCCCCCCEEECCC
Confidence                  2346667777776653 2221                                     1134456777777776


Q ss_pred             CcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecc
Q 038945          207 CSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGL  286 (363)
Q Consensus       207 c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l  286 (363)
                      +. +..++. +..+++|++|++++| .++.++.   +..+++|+.|++++|. +..+.         .+..+++|+.|++
T Consensus       139 n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~---------~l~~l~~L~~L~L  202 (308)
T 1h6u_A          139 NQ-ITNISP-LAGLTNLQYLSIGNA-QVSDLTP---LANLSKLTTLKADDNK-ISDIS---------PLASLPNLIEVHL  202 (308)
T ss_dssp             SC-CCCCGG-GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCG---------GGGGCTTCCEEEC
T ss_pred             Cc-cCcCcc-ccCCCCccEEEccCC-cCCCChh---hcCCCCCCEEECCCCc-cCcCh---------hhcCCCCCCEEEc
Confidence            64 333322 456677777777765 3444432   4566777777777654 22211         1345667777777


Q ss_pred             cccccccccCCCCcccCCCCccEEeeccC
Q 038945          287 DCLPSLTSFCLGNYALEFPSLEHVVVRQC  315 (363)
Q Consensus       287 ~~c~~L~~~~~~~~~~~~~~L~~L~l~~c  315 (363)
                      +++ .+..++.   ...+++|+.|+++++
T Consensus       203 ~~N-~l~~~~~---l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          203 KNN-QISDVSP---LANTSNLFIVTLTNQ  227 (308)
T ss_dssp             TTS-CCCBCGG---GTTCTTCCEEEEEEE
T ss_pred             cCC-ccCcccc---ccCCCCCCEEEccCC
Confidence            765 3444432   455677777777665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.45  E-value=1.6e-12  Score=118.57  Aligned_cols=196  Identities=14%  Similarity=0.165  Sum_probs=138.3

Q ss_pred             cccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCC
Q 038945            8 ILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDC   87 (363)
Q Consensus         8 ~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c   87 (363)
                      ...+++|++|.+..          .    .+..++ .+..+++|++|+++++. ++.++. .    ..+++|++|++++|
T Consensus        37 ~~~l~~L~~L~l~~----------~----~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~----~~l~~L~~L~L~~n   95 (308)
T 1h6u_A           37 QADLDGITTLSAFG----------T----GVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-L----KNLTKITELELSGN   95 (308)
T ss_dssp             HHHHHTCCEEECTT----------S----CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-G----TTCCSCCEEECCSC
T ss_pred             HHHcCCcCEEEeeC----------C----CccCch-hhhccCCCCEEEccCCc-CCCChh-H----ccCCCCCEEEccCC
Confidence            34578888888882          1    222233 35668999999999986 777554 3    57899999999998


Q ss_pred             CCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhc
Q 038945           88 KNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECN  167 (363)
Q Consensus        88 ~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~  167 (363)
                      . +... +.  +..+++|++|++++|. +..++.           ...+++|+.|+++++. +..+              
T Consensus        96 ~-l~~~-~~--~~~l~~L~~L~l~~n~-l~~~~~-----------l~~l~~L~~L~l~~n~-l~~~--------------  144 (308)
T 1h6u_A           96 P-LKNV-SA--IAGLQSIKTLDLTSTQ-ITDVTP-----------LAGLSNLQVLYLDLNQ-ITNI--------------  144 (308)
T ss_dssp             C-CSCC-GG--GTTCTTCCEEECTTSC-CCCCGG-----------GTTCTTCCEEECCSSC-CCCC--------------
T ss_pred             c-CCCc-hh--hcCCCCCCEEECCCCC-CCCchh-----------hcCCCCCCEEECCCCc-cCcC--------------
Confidence            4 6653 32  8889999999999875 555432           2468889999998763 3322              


Q ss_pred             cccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhcc
Q 038945          168 FIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLV  247 (363)
Q Consensus       168 ~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~  247 (363)
                                             +.+..+++|+.|++++|. +..++. +..+++|++|+++++ .++.++.   +..++
T Consensus       145 -----------------------~~l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~  195 (308)
T 1h6u_A          145 -----------------------SPLAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDN-KISDISP---LASLP  195 (308)
T ss_dssp             -----------------------GGGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGG---GGGCT
T ss_pred             -----------------------ccccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEECCCC-ccCcChh---hcCCC
Confidence                                   114556899999999885 455544 678899999999887 4555543   57889


Q ss_pred             ccCeEeeccCcchhhhhccCccccccccccccccceeccccccccccc
Q 038945          248 NLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSF  295 (363)
Q Consensus       248 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~  295 (363)
                      +|+.|++++|.. ..+.         .+..+++|+.|++++++ +...
T Consensus       196 ~L~~L~L~~N~l-~~~~---------~l~~l~~L~~L~l~~N~-i~~~  232 (308)
T 1h6u_A          196 NLIEVHLKNNQI-SDVS---------PLANTSNLFIVTLTNQT-ITNQ  232 (308)
T ss_dssp             TCCEEECTTSCC-CBCG---------GGTTCTTCCEEEEEEEE-EECC
T ss_pred             CCCEEEccCCcc-Cccc---------cccCCCCCCEEEccCCe-eecC
Confidence            999999998753 3221         24568899999998863 4443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.44  E-value=1.8e-12  Score=129.01  Aligned_cols=111  Identities=18%  Similarity=0.097  Sum_probs=79.7

Q ss_pred             CCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccc
Q 038945          197 ANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCI  276 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  276 (363)
                      ++|+.|+++++. +..++   ..+++|+.|+++++ .++.++.     .+++|+.|++++|. +..+.           .
T Consensus       161 ~~L~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N-~l~~l~~-----~~~~L~~L~L~~N~-l~~l~-----------~  218 (622)
T 3g06_A          161 SELCKLWAYNNQ-LTSLP---MLPSGLQELSVSDN-QLASLPT-----LPSELYKLWAYNNR-LTSLP-----------A  218 (622)
T ss_dssp             TTCCEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSSCC-----------C
T ss_pred             CCCCEEECCCCC-CCCCc---ccCCCCcEEECCCC-CCCCCCC-----ccchhhEEECcCCc-ccccC-----------C
Confidence            577777777764 44444   34688888888876 4555542     34788888888764 33221           1


Q ss_pred             cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      .+++|+.|+++++ .++.++.     .+++|+.|++++| +++.+|.   .+++|+.|++++|
T Consensus       219 ~~~~L~~L~Ls~N-~L~~lp~-----~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N  271 (622)
T 3g06_A          219 LPSGLKELIVSGN-RLTSLPV-----LPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN  271 (622)
T ss_dssp             CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS
T ss_pred             CCCCCCEEEccCC-ccCcCCC-----CCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC
Confidence            3578999999986 6676653     3689999999877 7887876   6789999999999

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.44  E-value=5.7e-12  Score=112.65  Aligned_cols=79  Identities=19%  Similarity=0.132  Sum_probs=45.9

Q ss_pred             ccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccc
Q 038945           50 DIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADK  129 (363)
Q Consensus        50 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  129 (363)
                      ..+++++++.. ++.+|...      .++|++|+++++ ++....+. .+..+++|++|+++++. +..++..       
T Consensus        17 ~~~~l~~~~~~-l~~ip~~~------~~~l~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~i~~~-------   79 (270)
T 2o6q_A           17 NKNSVDCSSKK-LTAIPSNI------PADTKKLDLQSN-KLSSLPSK-AFHRLTKLRLLYLNDNK-LQTLPAG-------   79 (270)
T ss_dssp             TTTEEECTTSC-CSSCCSCC------CTTCSEEECCSS-CCSCCCTT-SSSSCTTCCEEECCSSC-CSCCCTT-------
T ss_pred             CCCEEEccCCC-CCccCCCC------CCCCCEEECcCC-CCCeeCHH-HhcCCCCCCEEECCCCc-cCeeChh-------
Confidence            36677777765 66654333      356788888776 45543332 36777788888887653 4333210       


Q ss_pred             cccCCCCCccceeecccc
Q 038945          130 EHLCPLFPKLFSLRLIDL  147 (363)
Q Consensus       130 ~~~~~~l~~L~~L~l~~~  147 (363)
                        ....+++|+.|+++++
T Consensus        80 --~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           80 --IFKELKNLETLWVTDN   95 (270)
T ss_dssp             --TTSSCTTCCEEECCSS
T ss_pred             --hhcCCCCCCEEECCCC
Confidence              0124566666666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.43  E-value=4e-12  Score=113.94  Aligned_cols=211  Identities=19%  Similarity=0.177  Sum_probs=144.6

Q ss_pred             hhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcc
Q 038945           38 IQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLE  117 (363)
Q Consensus        38 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~  117 (363)
                      +..+|..+.  ++|++|+++++. ++.++... +  ..+++|++|++++| ++....+. .+..+++|++|+++++. +.
T Consensus        19 l~~ip~~l~--~~l~~L~ls~n~-l~~~~~~~-~--~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~   89 (276)
T 2z62_A           19 FYKIPDNLP--FSTKNLDLSFNP-LRHLGSYS-F--FSFPELQVLDLSRC-EIQTIEDG-AYQSLSHLSTLILTGNP-IQ   89 (276)
T ss_dssp             CSSCCSSSC--TTCCEEECTTCC-CCEECTTT-T--TTCTTCSEEECTTC-CCCEECTT-TTTTCTTCCEEECTTCC-CC
T ss_pred             ccccCCCCC--CCccEEECCCCc-ccccCHhH-h--ccccCCcEEECCCC-cCCccCHH-HccCCcCCCEEECCCCc-cC
Confidence            444555442  579999999987 88765432 1  57899999999998 56654443 38889999999999875 44


Q ss_pred             eecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCC
Q 038945          118 EVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFA  197 (363)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~  197 (363)
                      .++.         .....+++|+.|+++++. +..+.                                   ...+..++
T Consensus        90 ~~~~---------~~~~~l~~L~~L~l~~n~-l~~~~-----------------------------------~~~~~~l~  124 (276)
T 2z62_A           90 SLAL---------GAFSGLSSLQKLVAVETN-LASLE-----------------------------------NFPIGHLK  124 (276)
T ss_dssp             EECT---------TTTTTCTTCCEEECTTSC-CCCST-----------------------------------TCCCTTCT
T ss_pred             ccCh---------hhhcCCccccEEECCCCC-ccccC-----------------------------------chhcccCC
Confidence            4431         113467899999998763 22221                                   11256678


Q ss_pred             CccEEEeccCcCcc-cccccccCCCCCCEEeeccCcCccccCchhhhhhccccC----eEeeccCcchhhhhccCccccc
Q 038945          198 NLKSLEISECSQLQ-KLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLE----RMKMSDCKMMEEIIQSQVGEEA  272 (363)
Q Consensus       198 ~L~~L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~----~L~l~~c~~l~~~~~~~~~~~~  272 (363)
                      +|+.|+++++.... .++..+..+++|++|+++++ .++.++.. .+..+++|+    .|+++++. +..+...      
T Consensus       125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~l~l~L~ls~n~-l~~~~~~------  195 (276)
T 2z62_A          125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCT-DLRVLHQMPLLNLSLDLSLNP-MNFIQPG------  195 (276)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGG-GGHHHHTCTTCCEEEECCSSC-CCEECTT------
T ss_pred             CCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHH-HhhhhhhccccceeeecCCCc-ccccCcc------
Confidence            99999999986433 25677788999999999987 45555432 245566666    78888865 3322111      


Q ss_pred             cccccccccceecccccccccccCCCCcccCCCCccEEeeccC
Q 038945          273 EDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC  315 (363)
Q Consensus       273 ~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c  315 (363)
                        .....+|+.|+++++ .++.++... +..+++|++|+++++
T Consensus       196 --~~~~~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          196 --AFKEIRLKELALDTN-QLKSVPDGI-FDRLTSLQKIWLHTN  234 (276)
T ss_dssp             --SSCSCCEEEEECCSS-CCSCCCTTT-TTTCCSCCEEECCSS
T ss_pred             --ccCCCcccEEECCCC-ceeecCHhH-hcccccccEEEccCC
Confidence              123448999999986 477776652 467899999999855

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.43  E-value=1.9e-12  Score=116.00  Aligned_cols=209  Identities=18%  Similarity=0.203  Sum_probs=134.9

Q ss_pred             ccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccc
Q 038945           46 IGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEEL  125 (363)
Q Consensus        46 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~  125 (363)
                      ..+++|+.|+++++. ++.++ +.    ..+++|++|++++| ++.+ .+  .+..+++|++|++++|. +..++..   
T Consensus        38 ~~l~~L~~L~l~~~~-i~~~~-~l----~~l~~L~~L~l~~n-~l~~-~~--~l~~l~~L~~L~L~~n~-l~~~~~~---  103 (272)
T 3rfs_A           38 NELNSIDQIIANNSD-IKSVQ-GI----QYLPNVRYLALGGN-KLHD-IS--ALKELTNLTYLILTGNQ-LQSLPNG---  103 (272)
T ss_dssp             HHHTTCCEEECTTSC-CCCCT-TG----GGCTTCCEEECTTS-CCCC-CG--GGTTCTTCCEEECTTSC-CCCCCTT---
T ss_pred             ccccceeeeeeCCCC-ccccc-cc----ccCCCCcEEECCCC-CCCC-ch--hhcCCCCCCEEECCCCc-cCccChh---
Confidence            346788888888876 66533 22    46888888888887 4554 33  27788888888888764 4443321   


Q ss_pred             cccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEec
Q 038945          126 NADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEIS  205 (363)
Q Consensus       126 ~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~  205 (363)
                            ....+++|+.|+++++. ++.+.                                   ...+..+++|+.|+++
T Consensus       104 ------~~~~l~~L~~L~L~~n~-l~~~~-----------------------------------~~~~~~l~~L~~L~L~  141 (272)
T 3rfs_A          104 ------VFDKLTNLKELVLVENQ-LQSLP-----------------------------------DGVFDKLTNLTYLNLA  141 (272)
T ss_dssp             ------TTTTCTTCCEEECTTSC-CCCCC-----------------------------------TTTTTTCTTCCEEECC
T ss_pred             ------HhcCCcCCCEEECCCCc-CCccC-----------------------------------HHHhccCCCCCEEECC
Confidence                  12357788888888763 33321                                   1124556888888888


Q ss_pred             cCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccccccccee
Q 038945          206 ECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYL  284 (363)
Q Consensus       206 ~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L  284 (363)
                      +|. +..++. .+..+++|++|++++| .++.++. ..+..+++|+.|++++|.. ..+.       ...+..+++|+.|
T Consensus       142 ~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~l-~~~~-------~~~~~~l~~L~~L  210 (272)
T 3rfs_A          142 HNQ-LQSLPKGVFDKLTNLTELDLSYN-QLQSLPE-GVFDKLTQLKDLRLYQNQL-KSVP-------DGVFDRLTSLQYI  210 (272)
T ss_dssp             SSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCC-SCCC-------TTTTTTCTTCCEE
T ss_pred             CCc-cCccCHHHhccCccCCEEECCCC-CcCccCH-HHhcCCccCCEEECCCCcC-CccC-------HHHHhCCcCCCEE
Confidence            885 444443 3467888889988887 4555543 2356788888988888753 3221       1224567888888


Q ss_pred             cccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCC
Q 038945          285 GLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPK  330 (363)
Q Consensus       285 ~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~  330 (363)
                      ++.+++-         .+.+++|+.+++..+.-...+|..++.++.
T Consensus       211 ~l~~N~~---------~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          211 WLHDNPW---------DCTCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             ECCSSCB---------CCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             EccCCCc---------cccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            8887632         234777888877665444466666665544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.43  E-value=6.2e-12  Score=125.33  Aligned_cols=71  Identities=11%  Similarity=-0.034  Sum_probs=48.4

Q ss_pred             cccccccceecccccccccccCCCCcccCCCCccEEeeccCCCccccc-CCCcCC-CCcceeecccCCCCCCccccCCcc
Q 038945          275 CIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFS-QGVVDA-PKLNKVKPTEEEDGDDEGCWEGNL  352 (363)
Q Consensus       275 ~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~-~~L~~L~i~~~~~~~~~~~~~~~~  352 (363)
                      +..+++|++|+++++ .++.++... +..+++|+.|+++++ +++.++ ..+.++ ++|+.|++++|     ++.+++++
T Consensus       514 f~~l~~L~~L~Ls~N-~l~~l~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~N-----p~~C~C~~  585 (635)
T 4g8a_A          514 FNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQN-----DFACTCEH  585 (635)
T ss_dssp             TTTCTTCCEEECTTS-CCCBCCCGG-GTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTC-----CBCCSGGG
T ss_pred             HcCCCCCCEEECCCC-cCCCCChhH-HhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCC-----CCcccCCc
Confidence            556778888888875 566665442 556788999998776 555444 455566 58999999999     55555554


Q ss_pred             h
Q 038945          353 N  353 (363)
Q Consensus       353 ~  353 (363)
                      .
T Consensus       586 ~  586 (635)
T 4g8a_A          586 Q  586 (635)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.42  E-value=7.7e-14  Score=134.22  Aligned_cols=139  Identities=13%  Similarity=0.103  Sum_probs=86.3

Q ss_pred             cccCCCccEEEeccCcCccccccccc-----CCCCCCEEeeccCcCccccC---chhhhhhccccCeEeeccCcchhhhh
Q 038945          193 NKVFANLKSLEISECSQLQKLVPASC-----YLENLATLEVSKCHGLINLL---TLSTSESLVNLERMKMSDCKMMEEII  264 (363)
Q Consensus       193 l~~l~~L~~L~l~~c~~l~~l~~~~~-----~~~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~~~  264 (363)
                      +..+++|++|+++++..-...+..+.     ..++|++|++++|. ++...   ....+..+++|+.|++++|. +.+..
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~  243 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNK-LGDVG  243 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCc-CChHH
Confidence            45568999999999873222111111     35699999999883 44421   12235578999999999985 33221


Q ss_pred             ccCccccccccccccccceecccccccccc-----cCCCCcccCCCCccEEeeccCCCccc-----ccCCCc-CCCCcce
Q 038945          265 QSQVGEEAEDCIVFRKLEYLGLDCLPSLTS-----FCLGNYALEFPSLEHVVVRQCPTMKI-----FSQGVV-DAPKLNK  333 (363)
Q Consensus       265 ~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~-----~~~~~~~~~~~~L~~L~l~~c~~l~~-----l~~~~~-~~~~L~~  333 (363)
                      ...-  .......+++|++|++++| .++.     ++..  ...+++|++|+++++ .+..     ++..+. ..++|++
T Consensus       244 ~~~l--~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~--l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~  317 (461)
T 1z7x_W          244 MAEL--CPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRV--LRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLES  317 (461)
T ss_dssp             HHHH--HHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHH--HHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             HHHH--HHHHhcCCCCceEEECcCC-CCCHHHHHHHHHH--HhhCCCcceEECCCC-CCchHHHHHHHHHhccCCcccee
Confidence            0000  0001124789999999997 5554     3332  455899999999887 4542     222222 3479999


Q ss_pred             eecccC
Q 038945          334 VKPTEE  339 (363)
Q Consensus       334 L~i~~~  339 (363)
                      |+++++
T Consensus       318 L~L~~n  323 (461)
T 1z7x_W          318 LWVKSC  323 (461)
T ss_dssp             EECTTS
T ss_pred             eEcCCC
Confidence            999998

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.40  E-value=9.5e-13  Score=120.18  Aligned_cols=233  Identities=18%  Similarity=0.225  Sum_probs=151.1

Q ss_pred             cccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHH-hhcCCCCEEEEccCCCcceecccccccc
Q 038945           49 RDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLI-RCLNNLASLEVRNCDSLEEVLHLEELNA  127 (363)
Q Consensus        49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l-~~l~~L~~L~l~~~~~l~~~~~~~~~~~  127 (363)
                      ..++.+.+.++. +.............+++|++|++++| .+.+..|..++ ..+++|++|+++++.--...+...... 
T Consensus        64 ~~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~-  140 (310)
T 4glp_A           64 LRVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ-  140 (310)
T ss_dssp             CCCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH-
T ss_pred             cceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH-
Confidence            446777777765 43211110000013567999999998 56655665522 789999999999875322111111100 


Q ss_pred             cccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccC
Q 038945          128 DKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISEC  207 (363)
Q Consensus       128 ~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c  207 (363)
                           ...+++|+.|+++++. +..+                                   .+..+..+++|+.|+++++
T Consensus       141 -----~~~~~~L~~L~Ls~n~-l~~~-----------------------------------~~~~~~~l~~L~~L~Ls~N  179 (310)
T 4glp_A          141 -----QWLKPGLKVLSIAQAH-SPAF-----------------------------------SCEQVRAFPALTSLDLSDN  179 (310)
T ss_dssp             -----TTBCSCCCEEEEECCS-SCCC-----------------------------------CTTSCCCCTTCCEEECCSC
T ss_pred             -----hhhccCCCEEEeeCCC-cchh-----------------------------------hHHHhccCCCCCEEECCCC
Confidence                 1257889999998764 2222                                   1234567799999999998


Q ss_pred             cCccc--cc--ccccCCCCCCEEeeccCcCccccCch--hhhhhccccCeEeeccCcchhhh-hccCccccccccccccc
Q 038945          208 SQLQK--LV--PASCYLENLATLEVSKCHGLINLLTL--STSESLVNLERMKMSDCKMMEEI-IQSQVGEEAEDCIVFRK  280 (363)
Q Consensus       208 ~~l~~--l~--~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~~~~l~~  280 (363)
                      .....  ++  .....+++|++|++++| .++.++..  .+++.+++|+.|+++++.. ... +.     .......+++
T Consensus       180 ~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l-~~~~p~-----~~~~~~~~~~  252 (310)
T 4glp_A          180 PGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSL-RATVNP-----SAPRCMWSSA  252 (310)
T ss_dssp             TTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCC-CCCCCS-----CCSSCCCCTT
T ss_pred             CCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCC-Cccchh-----hHHhccCcCc
Confidence            75432  22  23357899999999997 45544321  1346789999999999863 322 11     1112223479


Q ss_pred             cceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          281 LEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       281 L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      |++|+++++ .++.++..  .  .++|++|+++++ +++.+|. ...+++|+.|++++|
T Consensus       253 L~~L~Ls~N-~l~~lp~~--~--~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          253 LNSLNLSFA-GLEQVPKG--L--PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGN  304 (310)
T ss_dssp             CCCEECCSS-CCCSCCSC--C--CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSST
T ss_pred             CCEEECCCC-CCCchhhh--h--cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCC
Confidence            999999986 67777665  3  379999999776 7777655 678899999999999

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.40  E-value=1.7e-11  Score=122.22  Aligned_cols=114  Identities=20%  Similarity=0.207  Sum_probs=81.1

Q ss_pred             cccccCCCccEEEeccCcCccc-ccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcc
Q 038945          191 ESNKVFANLKSLEISECSQLQK-LVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVG  269 (363)
Q Consensus       191 ~~l~~l~~L~~L~l~~c~~l~~-l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  269 (363)
                      .....++.|+.|+++++..... .|..+..+++|++|++++| .++.+++ ..++.+++|+.|+++++. +..+      
T Consensus       463 ~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~-~~f~~l~~L~~L~Ls~N~-l~~l------  533 (635)
T 4g8a_A          463 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP-TAFNSLSSLQVLNMSHNN-FFSL------  533 (635)
T ss_dssp             TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTSC-CCBC------
T ss_pred             cccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcCh-HHHcCCCCCCEEECCCCc-CCCC------
Confidence            3456678999999998876554 4556778899999999987 5666543 236788999999999874 3333      


Q ss_pred             ccccccccccccceecccccccccccCCCCcccCC-CCccEEeeccCC
Q 038945          270 EEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEF-PSLEHVVVRQCP  316 (363)
Q Consensus       270 ~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~-~~L~~L~l~~c~  316 (363)
                       ....+..+++|++|+++++ .+..+.... ...+ ++|+.|++++++
T Consensus       534 -~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          534 -DTFPYKCLNSLQVLDYSLN-HIMTSKKQE-LQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             -CCGGGTTCTTCCEEECTTS-CCCBCCSSC-TTCCCTTCCEEECTTCC
T ss_pred             -ChhHHhCCCCCCEEECCCC-cCCCCCHHH-HHhhhCcCCEEEeeCCC
Confidence             1223556889999999986 566665543 4455 579999997654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.39  E-value=3.3e-12  Score=114.39  Aligned_cols=213  Identities=18%  Similarity=0.168  Sum_probs=117.3

Q ss_pred             ccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccc
Q 038945           48 FRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNA  127 (363)
Q Consensus        48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~  127 (363)
                      +..+..+++.+.. +.+... .    ..+++|+.|++.++ .+... +.  ++.+++|++|+++++. +..++.      
T Consensus        18 ~~~l~~l~l~~~~-~~~~~~-~----~~l~~L~~L~l~~~-~i~~~-~~--l~~l~~L~~L~l~~n~-l~~~~~------   80 (272)
T 3rfs_A           18 FAETIKANLKKKS-VTDAVT-Q----NELNSIDQIIANNS-DIKSV-QG--IQYLPNVRYLALGGNK-LHDISA------   80 (272)
T ss_dssp             HHHHHHHHHTCSC-TTSEEC-H----HHHTTCCEEECTTS-CCCCC-TT--GGGCTTCCEEECTTSC-CCCCGG------
T ss_pred             HHHHHHHHhcCcc-cccccc-c----ccccceeeeeeCCC-Ccccc-cc--cccCCCCcEEECCCCC-CCCchh------
Confidence            3445555555544 333211 1    35677777777776 34432 22  6667777777777654 433321      


Q ss_pred             cccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccC
Q 038945          128 DKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISEC  207 (363)
Q Consensus       128 ~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c  207 (363)
                           ...+++|+.|+++++. ++.+.                                   ...+..+++|+.|++++|
T Consensus        81 -----l~~l~~L~~L~L~~n~-l~~~~-----------------------------------~~~~~~l~~L~~L~L~~n  119 (272)
T 3rfs_A           81 -----LKELTNLTYLILTGNQ-LQSLP-----------------------------------NGVFDKLTNLKELVLVEN  119 (272)
T ss_dssp             -----GTTCTTCCEEECTTSC-CCCCC-----------------------------------TTTTTTCTTCCEEECTTS
T ss_pred             -----hcCCCCCCEEECCCCc-cCccC-----------------------------------hhHhcCCcCCCEEECCCC
Confidence                 2356677777777652 33221                                   112345577777777776


Q ss_pred             cCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceeccc
Q 038945          208 SQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLD  287 (363)
Q Consensus       208 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~  287 (363)
                      ..-...+..+..+++|++|+++++ .++.++. ..+..+++|+.|++++|. +..+.       ...+..+++|+.|++.
T Consensus       120 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~-------~~~~~~l~~L~~L~L~  189 (272)
T 3rfs_A          120 QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPK-GVFDKLTNLTELDLSYNQ-LQSLP-------EGVFDKLTQLKDLRLY  189 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCC-------TTTTTTCTTCCEEECC
T ss_pred             cCCccCHHHhccCCCCCEEECCCC-ccCccCH-HHhccCccCCEEECCCCC-cCccC-------HHHhcCCccCCEEECC
Confidence            533222233556777777777776 4555443 224567777777777764 22221       1123456777777777


Q ss_pred             ccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecc
Q 038945          288 CLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPT  337 (363)
Q Consensus       288 ~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~  337 (363)
                      ++ .++.++... ...+++|++|++++++-.       +.+++|+.+++.
T Consensus       190 ~N-~l~~~~~~~-~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~  230 (272)
T 3rfs_A          190 QN-QLKSVPDGV-FDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEW  230 (272)
T ss_dssp             SS-CCSCCCTTT-TTTCTTCCEEECCSSCBC-------CCTTTTHHHHHH
T ss_pred             CC-cCCccCHHH-HhCCcCCCEEEccCCCcc-------ccCcHHHHHHHH
Confidence            75 455444432 455677777777666322       234556555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.37  E-value=1.5e-11  Score=109.90  Aligned_cols=179  Identities=22%  Similarity=0.255  Sum_probs=123.3

Q ss_pred             cccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccccc
Q 038945           49 RDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNAD  128 (363)
Q Consensus        49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  128 (363)
                      +.+++|+++++. ++.++...   ...+++|++|+++++ ++.. .+...+..+++|++|+++++. +..++.       
T Consensus        37 ~~l~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n-~l~~-i~~~~~~~l~~L~~L~l~~n~-l~~~~~-------  102 (270)
T 2o6q_A           37 ADTKKLDLQSNK-LSSLPSKA---FHRLTKLRLLYLNDN-KLQT-LPAGIFKELKNLETLWVTDNK-LQALPI-------  102 (270)
T ss_dssp             TTCSEEECCSSC-CSCCCTTS---SSSCTTCCEEECCSS-CCSC-CCTTTTSSCTTCCEEECCSSC-CCCCCT-------
T ss_pred             CCCCEEECcCCC-CCeeCHHH---hcCCCCCCEEECCCC-ccCe-eChhhhcCCCCCCEEECCCCc-CCcCCH-------
Confidence            679999999987 77755432   147899999999987 4554 555557889999999998864 544432       


Q ss_pred             ccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCc
Q 038945          129 KEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECS  208 (363)
Q Consensus       129 ~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~  208 (363)
                        .....+++|+.|+++++. ++.+.                                   ...+..+++|+.|+++++.
T Consensus       103 --~~~~~l~~L~~L~l~~n~-l~~~~-----------------------------------~~~~~~l~~L~~L~Ls~n~  144 (270)
T 2o6q_A          103 --GVFDQLVNLAELRLDRNQ-LKSLP-----------------------------------PRVFDSLTKLTYLSLGYNE  144 (270)
T ss_dssp             --TTTTTCSSCCEEECCSSC-CCCCC-----------------------------------TTTTTTCTTCCEEECCSSC
T ss_pred             --hHcccccCCCEEECCCCc-cCeeC-----------------------------------HHHhCcCcCCCEEECCCCc
Confidence              112467889999998753 33221                                   1224566899999999885


Q ss_pred             Ccccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceeccc
Q 038945          209 QLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLD  287 (363)
Q Consensus       209 ~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~  287 (363)
                       +..++. .+..+++|++|+++++ .++.++.. .+..+++|+.|+++++. ++.+.       ...+..+++|+.|++.
T Consensus       145 -l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~-------~~~~~~l~~L~~L~l~  213 (270)
T 2o6q_A          145 -LQSLPKGVFDKLTSLKELRLYNN-QLKRVPEG-AFDKLTELKTLKLDNNQ-LKRVP-------EGAFDSLEKLKMLQLQ  213 (270)
T ss_dssp             -CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSC-CSCCC-------TTTTTTCTTCCEEECC
T ss_pred             -CCccCHhHccCCcccceeEecCC-cCcEeChh-HhccCCCcCEEECCCCc-CCcCC-------HHHhccccCCCEEEec
Confidence             444443 3567899999999886 45555542 35678899999999874 33331       1224568889999998


Q ss_pred             ccc
Q 038945          288 CLP  290 (363)
Q Consensus       288 ~c~  290 (363)
                      +++
T Consensus       214 ~N~  216 (270)
T 2o6q_A          214 ENP  216 (270)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.36  E-value=6e-14  Score=134.96  Aligned_cols=300  Identities=14%  Similarity=0.084  Sum_probs=143.4

Q ss_pred             cccCCCceeEEEeeecccceeeeccCCCc-hhhhhhhccccccccceEecccCcCcccccccCcCCCCCCC----CccEE
Q 038945            8 ILSTPKLHKVQVTVKEEGELYHREGNLNS-TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFN----NLRHL   82 (363)
Q Consensus         8 ~~~~~~L~~l~~~~~~~~~~~~~~~~l~~-~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~----~L~~L   82 (363)
                      +..+++|++|+++.          ..+.. ....++..+..+++|++|+++++. +.+..... +. ..++    +|++|
T Consensus        24 ~~~~~~L~~L~L~~----------~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~-l~-~~l~~~~~~L~~L   90 (461)
T 1z7x_W           24 LPLLQQCQVVRLDD----------CGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHC-VL-QGLQTPSCKIQKL   90 (461)
T ss_dssp             HHHHTTCSEEEEES----------SCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHH-HH-HTTCSTTCCCCEE
T ss_pred             HhhcCCccEEEccC----------CCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHH-HH-HHHhhCCCceeEE
Confidence            34577888888882          23332 234566667777889999998876 65421110 00 1233    78899


Q ss_pred             EecCCCCCcc----cCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCccc
Q 038945           83 VLDDCKNMSS----AIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTG  158 (363)
Q Consensus        83 ~l~~c~~l~~----~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~  158 (363)
                      ++++|. +.+    ..+. .+..+++|++|+++++. +....... .   ........++|+.|++++|. +.....   
T Consensus        91 ~L~~n~-i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~-i~~~~~~~-l---~~~l~~~~~~L~~L~L~~n~-l~~~~~---  159 (461)
T 1z7x_W           91 SLQNCC-LTGAGCGVLSS-TLRTLPTLQELHLSDNL-LGDAGLQL-L---CEGLLDPQCRLEKLQLEYCS-LSAASC---  159 (461)
T ss_dssp             ECTTSC-CBGGGHHHHHH-HTTSCTTCCEEECCSSB-CHHHHHHH-H---HHHHTSTTCCCCEEECTTSC-CBGGGH---
T ss_pred             EccCCC-CCHHHHHHHHH-HHccCCceeEEECCCCc-CchHHHHH-H---HHHHhcCCCcceEEECCCCC-CCHHHH---
Confidence            998884 543    1233 37778888999888765 43211000 0   00001124467777776652 221000   


Q ss_pred             chhhhhhhccccch----------h---------------hHH-HHHHhhhhhhhh----cccccccCCCccEEEeccCc
Q 038945          159 NIIELLECNFIRIK----------S---------------NLM-TRLFALQHLLKE----NAESNKVFANLKSLEISECS  208 (363)
Q Consensus       159 ~~L~~l~~~~~~l~----------~---------------~L~-l~~~~~~~l~~~----~~~~l~~l~~L~~L~l~~c~  208 (363)
                      ..+...-..++++.          .               .|+ +.+. ..+++..    .+..+..+++|++|++++|.
T Consensus       160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~-~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE-SCGVTSDNCRDLCGIVASKASLRELALGSNK  238 (461)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT-TSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc-CCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence            00000001112221          0               000 0000 0011111    12233445666666666664


Q ss_pred             Ccccc-----cc-cccCCCCCCEEeeccCcCccccCc---hhhhhhccccCeEeeccCcchhhhhccCcccccccccccc
Q 038945          209 QLQKL-----VP-ASCYLENLATLEVSKCHGLINLLT---LSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFR  279 (363)
Q Consensus       209 ~l~~l-----~~-~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~  279 (363)
                       +...     .. ....+++|++|++++| .++....   ...+..+++|+.|+++++..-...... -...  .....+
T Consensus       239 -l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~-l~~~--l~~~~~  313 (461)
T 1z7x_W          239 -LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL-LCET--LLEPGC  313 (461)
T ss_dssp             -CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH-HHHH--HTSTTC
T ss_pred             -CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH-HHHH--hccCCc
Confidence             2211     11 1123566777777666 3443210   112345677777777766421111000 0000  001235


Q ss_pred             ccceecccccccccccCCC---CcccCCCCccEEeeccCCCccccc-CCCc-----CCCCcceeecccC
Q 038945          280 KLEYLGLDCLPSLTSFCLG---NYALEFPSLEHVVVRQCPTMKIFS-QGVV-----DAPKLNKVKPTEE  339 (363)
Q Consensus       280 ~L~~L~l~~c~~L~~~~~~---~~~~~~~~L~~L~l~~c~~l~~l~-~~~~-----~~~~L~~L~i~~~  339 (363)
                      +|++|++++|. +......   .....+++|++|++++| .++... ..+.     ..++|++|++++|
T Consensus       314 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  380 (461)
T 1z7x_W          314 QLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC  380 (461)
T ss_dssp             CCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC
Confidence            78888888764 3322110   01344688888888777 555332 1111     2678888888888

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.36  E-value=6.3e-13  Score=121.51  Aligned_cols=229  Identities=17%  Similarity=0.076  Sum_probs=152.3

Q ss_pred             ccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHh-------hcCCCCEEEEccCCCcce
Q 038945           46 IGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIR-------CLNNLASLEVRNCDSLEE  118 (363)
Q Consensus        46 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~-------~l~~L~~L~l~~~~~l~~  118 (363)
                      ...++|++|+++++. + .+|...      ...|++|+++++.--....|.. +.       ++++|++|+++++.--..
T Consensus        40 ~~~~~L~~l~l~~n~-l-~~p~~~------~~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~  110 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDT-E-ADLGQF------TDIIKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENLEVTGT  110 (312)
T ss_dssp             EEEEECTTHHHHCCT-T-CCCHHH------HHHHHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBCBSC
T ss_pred             ccCCCceeEeecccc-c-ccHHHH------HHHHhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcccch
Confidence            345779999999887 5 545433      1238888888763212234443 33       689999999998753223


Q ss_pred             ecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhccccccc---
Q 038945          119 VLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKV---  195 (363)
Q Consensus       119 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~---  195 (363)
                      ++...        ....+++|+.|+++++. +..++                                    ..+..   
T Consensus       111 ~~~~~--------~~~~l~~L~~L~Ls~N~-l~~~~------------------------------------~~~~~l~~  145 (312)
T 1wwl_A          111 APPPL--------LEATGPDLNILNLRNVS-WATRD------------------------------------AWLAELQQ  145 (312)
T ss_dssp             CCCCS--------SSCCSCCCSEEEEESCB-CSSSS------------------------------------SHHHHHHT
T ss_pred             hHHHH--------HHhcCCCccEEEccCCC-Ccchh------------------------------------HHHHHHHH
Confidence            33110        02478899999999763 43321                                    01111   


Q ss_pred             --CCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccC--chhhhhhccccCeEeeccCcch--hhhhccCcc
Q 038945          196 --FANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLL--TLSTSESLVNLERMKMSDCKMM--EEIIQSQVG  269 (363)
Q Consensus       196 --l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~l~~c~~l--~~~~~~~~~  269 (363)
                        +++|+.|+++++..-...+..+..+++|++|+++++.-....+  ....+..+++|+.|++++|..-  ..+..    
T Consensus       146 ~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----  221 (312)
T 1wwl_A          146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS----  221 (312)
T ss_dssp             TCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH----
T ss_pred             hhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH----
Confidence              2899999999997544445678889999999999986443321  1112268899999999998532  12211    


Q ss_pred             ccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          270 EEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       270 ~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                         ..+..+++|++|+++++ .++..........+++|++|++++| .++.+|..+.  ++|+.|++++|
T Consensus       222 ---~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N  284 (312)
T 1wwl_A          222 ---ALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN  284 (312)
T ss_dssp             ---HHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS
T ss_pred             ---HHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC
Confidence               11235789999999996 4555442222455789999999877 6778887776  89999999999

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.34  E-value=1.3e-11  Score=111.70  Aligned_cols=199  Identities=17%  Similarity=0.155  Sum_probs=126.8

Q ss_pred             cccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCC
Q 038945            8 ILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDC   87 (363)
Q Consensus         8 ~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c   87 (363)
                      +..+++++.+++..              ..+..+|..+  .+.++.|+++++. ++.++... +  ..+++|++|+++++
T Consensus         6 ~~~l~~l~~l~~~~--------------~~l~~ip~~~--~~~l~~L~L~~N~-l~~~~~~~-~--~~l~~L~~L~L~~n   65 (290)
T 1p9a_G            6 VSKVASHLEVNCDK--------------RNLTALPPDL--PKDTTILHLSENL-LYTFSLAT-L--MPYTRLTQLNLDRA   65 (290)
T ss_dssp             EECSTTCCEEECTT--------------SCCSSCCSCC--CTTCCEEECTTSC-CSEEEGGG-G--TTCTTCCEEECTTS
T ss_pred             ccccCCccEEECCC--------------CCCCcCCCCC--CCCCCEEEcCCCc-CCccCHHH-h--hcCCCCCEEECCCC
Confidence            56788889988881              2233455444  2678999999887 76654322 1  47889999999887


Q ss_pred             CCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhc
Q 038945           88 KNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECN  167 (363)
Q Consensus        88 ~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~  167 (363)
                       ++....+   .+.+++|++|+++++. +..++..          ...+++|+.|+++++ +++.+.             
T Consensus        66 -~l~~~~~---~~~l~~L~~L~Ls~N~-l~~l~~~----------~~~l~~L~~L~l~~N-~l~~l~-------------  116 (290)
T 1p9a_G           66 -ELTKLQV---DGTLPVLGTLDLSHNQ-LQSLPLL----------GQTLPALTVLDVSFN-RLTSLP-------------  116 (290)
T ss_dssp             -CCCEEEC---CSCCTTCCEEECCSSC-CSSCCCC----------TTTCTTCCEEECCSS-CCCCCC-------------
T ss_pred             -ccCcccC---CCCCCcCCEEECCCCc-CCcCchh----------hccCCCCCEEECCCC-cCcccC-------------
Confidence             4665433   3678899999998763 5544321          246778888888865 233321             


Q ss_pred             cccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhc
Q 038945          168 FIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESL  246 (363)
Q Consensus       168 ~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l  246 (363)
                                            ...+..+++|+.|+++++. +..++. .+..+++|+.|+++++ .++.++. ..+..+
T Consensus       117 ----------------------~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~l  171 (290)
T 1p9a_G          117 ----------------------LGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN-NLTELPA-GLLNGL  171 (290)
T ss_dssp             ----------------------SSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCSCCCT-TTTTTC
T ss_pred             ----------------------HHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCC-cCCccCH-HHhcCc
Confidence                                  1234556788888888875 334433 3456778888888775 4666554 234567


Q ss_pred             cccCeEeeccCcchhhhhccCccccccccccccccceeccccc
Q 038945          247 VNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCL  289 (363)
Q Consensus       247 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c  289 (363)
                      ++|+.|+++++. ++.++.        .+...++|+.+++.++
T Consensus       172 ~~L~~L~L~~N~-l~~ip~--------~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          172 ENLDTLLLQENS-LYTIPK--------GFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             TTCCEEECCSSC-CCCCCT--------TTTTTCCCSEEECCSC
T ss_pred             CCCCEEECCCCc-CCccCh--------hhcccccCCeEEeCCC
Confidence            888888887764 333321        1334557777777754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.27  E-value=4.1e-12  Score=118.54  Aligned_cols=247  Identities=14%  Similarity=0.028  Sum_probs=140.3

Q ss_pred             cccccccceEecccCcCcccccccCcC--CCCCCC-CccEEEecCCCCCcccCchhHHhhc-----CCCCEEEEccCCCc
Q 038945           45 MIGFRDIENIKLSLFPRLKEIWHNQAL--PVSFFN-NLRHLVLDDCKNMSSAIPANLIRCL-----NNLASLEVRNCDSL  116 (363)
Q Consensus        45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l--~~~~l~-~L~~L~l~~c~~l~~~~p~~~l~~l-----~~L~~L~l~~~~~l  116 (363)
                      ....++|++|+++++. ++..+... +  ....++ +|++|++++| ++....+.. +..+     ++|++|++++|. +
T Consensus        18 ~~~~~~L~~L~Ls~n~-l~~~~~~~-l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~n~-l   92 (362)
T 3goz_A           18 TSIPHGVTSLDLSLNN-LYSISTVE-LIQAFANTPASVTSLNLSGN-SLGFKNSDE-LVQILAAIPANVTSLNLSGNF-L   92 (362)
T ss_dssp             HTSCTTCCEEECTTSC-GGGSCHHH-HHHHHHTCCTTCCEEECCSS-CGGGSCHHH-HHHHHHTSCTTCCEEECCSSC-G
T ss_pred             HhCCCCceEEEccCCC-CChHHHHH-HHHHHHhCCCceeEEECcCC-CCCHHHHHH-HHHHHhccCCCccEEECcCCc-C
Confidence            3334559999999887 77644210 0  003566 8999999988 566655544 4544     889999998875 4


Q ss_pred             ceecccccccccccccCCCC-CccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhccccccc
Q 038945          117 EEVLHLEELNADKEHLCPLF-PKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKV  195 (363)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~  195 (363)
                      .......     .......+ ++|+.|+++++. +.....      ..+                         ...+..
T Consensus        93 ~~~~~~~-----l~~~l~~~~~~L~~L~Ls~N~-l~~~~~------~~l-------------------------~~~l~~  135 (362)
T 3goz_A           93 SYKSSDE-----LVKTLAAIPFTITVLDLGWND-FSSKSS------SEF-------------------------KQAFSN  135 (362)
T ss_dssp             GGSCHHH-----HHHHHHTSCTTCCEEECCSSC-GGGSCH------HHH-------------------------HHHHTT
T ss_pred             ChHHHHH-----HHHHHHhCCCCccEEECcCCc-CCcHHH------HHH-------------------------HHHHHh
Confidence            3322100     00001123 688888888774 333210      000                         111222


Q ss_pred             C-CCccEEEeccCcCcc----cccccccCCC-CCCEEeeccCcCccccCchh---hhhhc-cccCeEeeccCcchhhhhc
Q 038945          196 F-ANLKSLEISECSQLQ----KLVPASCYLE-NLATLEVSKCHGLINLLTLS---TSESL-VNLERMKMSDCKMMEEIIQ  265 (363)
Q Consensus       196 l-~~L~~L~l~~c~~l~----~l~~~~~~~~-~L~~L~l~~c~~l~~~~~~~---~~~~l-~~L~~L~l~~c~~l~~~~~  265 (363)
                      + ++|++|++++|..-.    .++..+..++ +|++|++++| .++......   .+..+ ++|+.|++++|. +.+...
T Consensus       136 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~  213 (362)
T 3goz_A          136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSY  213 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCH
T ss_pred             CCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHH
Confidence            2 588888888875332    2222333444 8889998887 454443221   22344 488899988875 222000


Q ss_pred             cCcccccccccc-ccccceecccccccccccCCC---CcccCCCCccEEeeccCC-------CcccccCCCcCCCCccee
Q 038945          266 SQVGEEAEDCIV-FRKLEYLGLDCLPSLTSFCLG---NYALEFPSLEHVVVRQCP-------TMKIFSQGVVDAPKLNKV  334 (363)
Q Consensus       266 ~~~~~~~~~~~~-l~~L~~L~l~~c~~L~~~~~~---~~~~~~~~L~~L~l~~c~-------~l~~l~~~~~~~~~L~~L  334 (363)
                      .   .-...+.. .++|++|+++++ .+.+....   .....+++|++|++++|.       .+..++.....+++|+.|
T Consensus       214 ~---~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~L  289 (362)
T 3goz_A          214 A---ELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV  289 (362)
T ss_dssp             H---HHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEE
T ss_pred             H---HHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEE
Confidence            0   00011222 348888888886 45443221   113456789999988875       134455566688888899


Q ss_pred             ecccC
Q 038945          335 KPTEE  339 (363)
Q Consensus       335 ~i~~~  339 (363)
                      ++++|
T Consensus       290 dL~~N  294 (362)
T 3goz_A          290 DKNGK  294 (362)
T ss_dssp             CTTSC
T ss_pred             ecCCC
Confidence            99888

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.27  E-value=4.2e-11  Score=101.79  Aligned_cols=56  Identities=16%  Similarity=0.317  Sum_probs=27.9

Q ss_pred             ccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccC
Q 038945           48 FRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNC  113 (363)
Q Consensus        48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~  113 (363)
                      +++|++|+++++. ++.++ +.    ..+++|++|++++| .+... + . +..+++|++|+++++
T Consensus        43 l~~L~~L~l~~n~-i~~l~-~l----~~l~~L~~L~l~~n-~~~~~-~-~-l~~l~~L~~L~l~~n   98 (197)
T 4ezg_A           43 MNSLTYITLANIN-VTDLT-GI----EYAHNIKDLTINNI-HATNY-N-P-ISGLSNLERLRIMGK   98 (197)
T ss_dssp             HHTCCEEEEESSC-CSCCT-TG----GGCTTCSEEEEESC-CCSCC-G-G-GTTCTTCCEEEEECT
T ss_pred             cCCccEEeccCCC-ccChH-HH----hcCCCCCEEEccCC-CCCcc-h-h-hhcCCCCCEEEeECC
Confidence            4555555555554 44443 22    24555555655555 33321 1 1 455555555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.26  E-value=4.8e-12  Score=119.03  Aligned_cols=274  Identities=13%  Similarity=0.084  Sum_probs=166.8

Q ss_pred             cccccccCCCceeEEEeeecccceeeeccCCCc-hhhhhhhccccccccceEecccCcCcccc----cccCc-C--CCCC
Q 038945            4 FSLGILSTPKLHKVQVTVKEEGELYHREGNLNS-TIQKCYIEMIGFRDIENIKLSLFPRLKEI----WHNQA-L--PVSF   75 (363)
Q Consensus         4 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~-~~~~l~~~~~~~~~L~~L~l~~~~~l~~~----~~~~~-l--~~~~   75 (363)
                      ++..+..+++|++|+++          +..+.. ....++..+..+++|++|++++|. +..+    |.+.. +  ....
T Consensus        24 l~~~l~~~~~L~~L~L~----------~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~   92 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLS----------GNTIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLK   92 (386)
T ss_dssp             TSHHHHHCSCCCEEECT----------TSEECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTT
T ss_pred             HHHHHhcCCCccEEECC----------CCCCCHHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhh
Confidence            44556778999999999          222322 233455567778999999999974 3321    11110 0  0136


Q ss_pred             CCCccEEEecCCCCCcc----cCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCC---------Ccccee
Q 038945           76 FNNLRHLVLDDCKNMSS----AIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLF---------PKLFSL  142 (363)
Q Consensus        76 l~~L~~L~l~~c~~l~~----~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l---------~~L~~L  142 (363)
                      +++|++|++++| .+..    .++.. +..+++|++|++++|. +....... ...    ....+         ++|+.|
T Consensus        93 ~~~L~~L~Ls~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~-l~~~~~~~-l~~----~l~~l~~~~~~~~~~~L~~L  164 (386)
T 2ca6_A           93 CPKLHTVRLSDN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNNG-LGPQAGAK-IAR----ALQELAVNKKAKNAPPLRSI  164 (386)
T ss_dssp             CTTCCEEECCSC-CCCTTTHHHHHHH-HHHCTTCCEEECCSSC-CHHHHHHH-HHH----HHHHHHHHHHHHTCCCCCEE
T ss_pred             CCcccEEECCCC-cCCHHHHHHHHHH-HHhCCCCCEEECcCCC-CCHHHHHH-HHH----HHHHHhhhhhcccCCCCcEE
Confidence            899999999998 4554    23333 7889999999999886 33211100 000    00112         799999


Q ss_pred             ecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcc----cccc-cc
Q 038945          143 RLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQ----KLVP-AS  217 (363)
Q Consensus       143 ~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~----~l~~-~~  217 (363)
                      +++++. +...      .+       +                  .....+..+++|+.|++++|..-.    .+.. .+
T Consensus       165 ~L~~n~-l~~~------~~-------~------------------~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l  212 (386)
T 2ca6_A          165 ICGRNR-LENG------SM-------K------------------EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL  212 (386)
T ss_dssp             ECCSSC-CTGG------GH-------H------------------HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG
T ss_pred             ECCCCC-CCcH------HH-------H------------------HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh
Confidence            999874 2210      00       0                  001234455899999999986321    1223 66


Q ss_pred             cCCCCCCEEeeccCcCc-----cccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc--ccccccceecccccc
Q 038945          218 CYLENLATLEVSKCHGL-----INLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC--IVFRKLEYLGLDCLP  290 (363)
Q Consensus       218 ~~~~~L~~L~l~~c~~l-----~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~--~~l~~L~~L~l~~c~  290 (363)
                      ..+++|++|++++|. +     ..++  ..+..+++|+.|++++|..-......    -...+  ..+++|++|++++|.
T Consensus       213 ~~~~~L~~L~Ls~n~-l~~~g~~~l~--~~l~~~~~L~~L~L~~n~i~~~~~~~----l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          213 AYCQELKVLDLQDNT-FTHLGSSALA--IALKSWPNLRELGLNDCLLSARGAAA----VVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             GGCTTCCEEECCSSC-CHHHHHHHHH--HHGGGCTTCCEEECTTCCCCHHHHHH----HHHHHHTCSSCCCCEEECCSSC
T ss_pred             hcCCCccEEECcCCC-CCcHHHHHHH--HHHccCCCcCEEECCCCCCchhhHHH----HHHHHhhccCCCeEEEECcCCc
Confidence            789999999999875 4     3333  23567899999999998732221000    00112  237899999999974


Q ss_pred             cccc-----cCCCCcc-cCCCCccEEeeccCCCccccc---CCCc-CCCCcceeecccC
Q 038945          291 SLTS-----FCLGNYA-LEFPSLEHVVVRQCPTMKIFS---QGVV-DAPKLNKVKPTEE  339 (363)
Q Consensus       291 ~L~~-----~~~~~~~-~~~~~L~~L~l~~c~~l~~l~---~~~~-~~~~L~~L~i~~~  339 (363)
                       +..     ++..  . ..+++|++|++++|+ ++...   ..+. .+++++.+++.+.
T Consensus       286 -i~~~g~~~l~~~--l~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l~~~~~~~l~~~  340 (386)
T 2ca6_A          286 -IELDAVRTLKTV--IDEKMPDLLFLELNGNR-FSEEDDVVDEIREVFSTRGRGELDEL  340 (386)
T ss_dssp             -CBHHHHHHHHHH--HHHHCTTCCEEECTTSB-SCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred             -CCHHHHHHHHHH--HHhcCCCceEEEccCCc-CCcchhHHHHHHHHhhhcCcchhhhc
Confidence             444     4433  3 458999999998874 43222   2222 4566666666554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.26  E-value=4.7e-11  Score=107.93  Aligned_cols=167  Identities=17%  Similarity=0.250  Sum_probs=89.5

Q ss_pred             cccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccc
Q 038945           47 GFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELN  126 (363)
Q Consensus        47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~  126 (363)
                      .+++|++|+++++. ++.++. .    ..+++|++|++++| ++.+..+   +..+++|++|+++++. +..++.     
T Consensus        44 ~l~~L~~L~l~~~~-i~~~~~-~----~~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~-----  107 (291)
T 1h6t_A           44 ELNSIDQIIANNSD-IKSVQG-I----QYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDENK-VKDLSS-----  107 (291)
T ss_dssp             HHHTCCEEECTTSC-CCCCTT-G----GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCGGG-----
T ss_pred             hcCcccEEEccCCC-cccChh-H----hcCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCCc-CCCChh-----
Confidence            35667777777665 555432 2    35677777777766 4454333   6667777777776653 433322     


Q ss_pred             ccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEecc
Q 038945          127 ADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISE  206 (363)
Q Consensus       127 ~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~  206 (363)
                            ...+++|+.|+++++. +..+                                     +.+..+++|+.|++++
T Consensus       108 ------l~~l~~L~~L~L~~n~-i~~~-------------------------------------~~l~~l~~L~~L~l~~  143 (291)
T 1h6t_A          108 ------LKDLKKLKSLSLEHNG-ISDI-------------------------------------NGLVHLPQLESLYLGN  143 (291)
T ss_dssp             ------GTTCTTCCEEECTTSC-CCCC-------------------------------------GGGGGCTTCCEEECCS
T ss_pred             ------hccCCCCCEEECCCCc-CCCC-------------------------------------hhhcCCCCCCEEEccC
Confidence                  2345666666666552 2221                                     1233446666666666


Q ss_pred             CcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecc
Q 038945          207 CSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGL  286 (363)
Q Consensus       207 c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l  286 (363)
                      |. +..+ ..+..+++|++|++++| .++.++.   +..+++|+.|++++|. ++.+         ..+..+++|+.|++
T Consensus       144 n~-l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N~-i~~l---------~~l~~l~~L~~L~l  207 (291)
T 1h6t_A          144 NK-ITDI-TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKNH-ISDL---------RALAGLKNLDVLEL  207 (291)
T ss_dssp             SC-CCCC-GGGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCBC---------GGGTTCTTCSEEEE
T ss_pred             Cc-CCcc-hhhccCCCCCEEEccCC-ccccchh---hcCCCccCEEECCCCc-CCCC---------hhhccCCCCCEEEC
Confidence            54 2333 33455666666666665 3444332   4456666666666653 2211         11344566666666


Q ss_pred             ccc
Q 038945          287 DCL  289 (363)
Q Consensus       287 ~~c  289 (363)
                      +++
T Consensus       208 ~~n  210 (291)
T 1h6t_A          208 FSQ  210 (291)
T ss_dssp             EEE
T ss_pred             cCC
Confidence            654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.24  E-value=5.2e-11  Score=107.69  Aligned_cols=170  Identities=18%  Similarity=0.249  Sum_probs=125.7

Q ss_pred             ccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCC
Q 038945            9 LSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCK   88 (363)
Q Consensus         9 ~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~   88 (363)
                      ..+++|++|.++.          .    .+..++ .+..+++|++|+++++. ++.++. .    ..+++|++|++++| 
T Consensus        43 ~~l~~L~~L~l~~----------~----~i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l----~~l~~L~~L~l~~n-  100 (291)
T 1h6t_A           43 NELNSIDQIIANN----------S----DIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-L----ANLKNLGWLFLDEN-  100 (291)
T ss_dssp             HHHHTCCEEECTT----------S----CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-G----TTCTTCCEEECCSS-
T ss_pred             hhcCcccEEEccC----------C----CcccCh-hHhcCCCCCEEEccCCc-cCCCcc-c----ccCCCCCEEECCCC-
Confidence            4577888888881          1    122222 35668999999999987 777554 3    58999999999998 


Q ss_pred             CCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhcc
Q 038945           89 NMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNF  168 (363)
Q Consensus        89 ~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~  168 (363)
                      .+.. ++.  +..+++|++|++++|. +..++.           ...+++|+.|+++++. ++.+               
T Consensus       101 ~l~~-~~~--l~~l~~L~~L~L~~n~-i~~~~~-----------l~~l~~L~~L~l~~n~-l~~~---------------  149 (291)
T 1h6t_A          101 KVKD-LSS--LKDLKKLKSLSLEHNG-ISDING-----------LVHLPQLESLYLGNNK-ITDI---------------  149 (291)
T ss_dssp             CCCC-GGG--GTTCTTCCEEECTTSC-CCCCGG-----------GGGCTTCCEEECCSSC-CCCC---------------
T ss_pred             cCCC-Chh--hccCCCCCEEECCCCc-CCCChh-----------hcCCCCCCEEEccCCc-CCcc---------------
Confidence            4665 333  8899999999999874 555432           2367899999998763 3322               


Q ss_pred             ccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccc
Q 038945          169 IRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVN  248 (363)
Q Consensus       169 ~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~  248 (363)
                                            +.+..+++|+.|++++|. +..++. +..+++|++|+++++ .++.++.   +..+++
T Consensus       150 ----------------------~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~---l~~l~~  201 (291)
T 1h6t_A          150 ----------------------TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKN-HISDLRA---LAGLKN  201 (291)
T ss_dssp             ----------------------GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCBCGG---GTTCTT
T ss_pred             ----------------------hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCC-cCCCChh---hccCCC
Confidence                                  234566999999999985 445544 778999999999987 5666643   678999


Q ss_pred             cCeEeeccCcc
Q 038945          249 LERMKMSDCKM  259 (363)
Q Consensus       249 L~~L~l~~c~~  259 (363)
                      |+.|++++++.
T Consensus       202 L~~L~l~~n~i  212 (291)
T 1h6t_A          202 LDVLELFSQEC  212 (291)
T ss_dssp             CSEEEEEEEEE
T ss_pred             CCEEECcCCcc
Confidence            99999998763

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.24  E-value=6.2e-11  Score=108.06  Aligned_cols=205  Identities=15%  Similarity=0.125  Sum_probs=132.0

Q ss_pred             cccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCc---hhHHhhcCCCCEEEEccCCCcceecccc
Q 038945           47 GFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIP---ANLIRCLNNLASLEVRNCDSLEEVLHLE  123 (363)
Q Consensus        47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p---~~~l~~l~~L~~L~l~~~~~l~~~~~~~  123 (363)
                      .++.|++|+++++. +....... +....+++|++|+++++. +....+   ...+..+++|++|++++|. +..++.. 
T Consensus        89 ~~~~L~~L~l~~n~-l~~~~~~~-~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~-  163 (310)
T 4glp_A           89 AYSRLKELTLEDLK-ITGTMPPL-PLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCE-  163 (310)
T ss_dssp             HHSCCCEEEEESCC-CBSCCCCC-SSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTT-
T ss_pred             ccCceeEEEeeCCE-eccchhhh-hhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHH-
Confidence            35679999999987 65422221 110468999999999984 444333   1224569999999999875 4433211 


Q ss_pred             cccccccccCCCCCccceeeccccccccc--ccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccE
Q 038945          124 ELNADKEHLCPLFPKLFSLRLIDLPKLKR--FCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKS  201 (363)
Q Consensus       124 ~~~~~~~~~~~~l~~L~~L~l~~~~~L~~--l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~  201 (363)
                              ....+++|+.|+++++.-...  +.                                  ....+..+++|+.
T Consensus       164 --------~~~~l~~L~~L~Ls~N~l~~~~~~~----------------------------------~~~~~~~l~~L~~  201 (310)
T 4glp_A          164 --------QVRAFPALTSLDLSDNPGLGERGLM----------------------------------AALCPHKFPAIQN  201 (310)
T ss_dssp             --------SCCCCTTCCEEECCSCTTCHHHHHH----------------------------------TTSCTTSSCCCCS
T ss_pred             --------HhccCCCCCEEECCCCCCccchhhh----------------------------------HHHhhhcCCCCCE
Confidence                    134688999999998752211  10                                  0111245689999


Q ss_pred             EEeccCcCcccccc----cccCCCCCCEEeeccCcCcccc-Cch-hhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945          202 LEISECSQLQKLVP----ASCYLENLATLEVSKCHGLINL-LTL-STSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC  275 (363)
Q Consensus       202 L~l~~c~~l~~l~~----~~~~~~~L~~L~l~~c~~l~~~-~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  275 (363)
                      |++++|. ++.++.    .+..+++|++|+++++. ++.. |.. .....+++|+.|++++|. ++.++..         
T Consensus       202 L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~---------  269 (310)
T 4glp_A          202 LALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKG---------  269 (310)
T ss_dssp             CBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSC---------
T ss_pred             EECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCC-CCchhhh---------
Confidence            9999985 343332    13567999999999874 4444 321 111223799999999875 3333221         


Q ss_pred             ccccccceecccccccccccCCCCcccCCCCccEEeeccC
Q 038945          276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC  315 (363)
Q Consensus       276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c  315 (363)
                       .+++|+.|+++++ .++.++.   ...+++|+.|+++++
T Consensus       270 -~~~~L~~L~Ls~N-~l~~~~~---~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          270 -LPAKLRVLDLSSN-RLNRAPQ---PDELPEVDNLTLDGN  304 (310)
T ss_dssp             -CCSCCSCEECCSC-CCCSCCC---TTSCCCCSCEECSST
T ss_pred             -hcCCCCEEECCCC-cCCCCch---hhhCCCccEEECcCC
Confidence             1379999999986 5665543   456899999999776

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.23  E-value=1.4e-10  Score=102.30  Aligned_cols=164  Identities=20%  Similarity=0.190  Sum_probs=103.1

Q ss_pred             hhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcc
Q 038945           38 IQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLE  117 (363)
Q Consensus        38 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~  117 (363)
                      +..+|..+.  +.+++|+++++. +..++...   ...+++|++|+++++ ++....+ ..+..+++|++|+++++. +.
T Consensus        26 l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~   96 (251)
T 3m19_A           26 LDSVPSGIP--ADTEKLDLQSTG-LATLSDAT---FRGLTKLTWLNLDYN-QLQTLSA-GVFDDLTELGTLGLANNQ-LA   96 (251)
T ss_dssp             CSSCCSCCC--TTCCEEECTTSC-CCCCCTTT---TTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTSC-CC
T ss_pred             ccccCCCCC--CCCCEEEccCCC-cCccCHhH---hcCcccCCEEECCCC-cCCccCH-hHhccCCcCCEEECCCCc-cc
Confidence            334444433  578888888876 66544322   146788888888887 5565444 337778888888888754 44


Q ss_pred             eecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCC
Q 038945          118 EVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFA  197 (363)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~  197 (363)
                      .++.         .....+++|+.|+++++ +++.+.                                   ...+..++
T Consensus        97 ~~~~---------~~~~~l~~L~~L~L~~N-~l~~~~-----------------------------------~~~~~~l~  131 (251)
T 3m19_A           97 SLPL---------GVFDHLTQLDKLYLGGN-QLKSLP-----------------------------------SGVFDRLT  131 (251)
T ss_dssp             CCCT---------TTTTTCTTCCEEECCSS-CCCCCC-----------------------------------TTTTTTCT
T ss_pred             ccCh---------hHhcccCCCCEEEcCCC-cCCCcC-----------------------------------hhHhccCC
Confidence            4331         11235678888888765 343321                                   11234567


Q ss_pred             CccEEEeccCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCc
Q 038945          198 NLKSLEISECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCK  258 (363)
Q Consensus       198 ~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  258 (363)
                      +|+.|+++++. +..++. .+..+++|++|+++++ .++.++. ..+..+++|+.|++++++
T Consensus       132 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          132 KLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTN-QLQSVPH-GAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred             cccEEECcCCc-CCccCHHHcCcCcCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCc
Confidence            88888888774 444444 4667788888888776 4555543 235677888888887765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.23  E-value=9.1e-11  Score=99.65  Aligned_cols=36  Identities=22%  Similarity=0.421  Sum_probs=24.0

Q ss_pred             CCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccC
Q 038945           74 SFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNC  113 (363)
Q Consensus        74 ~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~  113 (363)
                      ..+++|++|+++++ ++.. .| . +..+++|++|++++|
T Consensus        41 ~~l~~L~~L~l~~n-~i~~-l~-~-l~~l~~L~~L~l~~n   76 (197)
T 4ezg_A           41 AQMNSLTYITLANI-NVTD-LT-G-IEYAHNIKDLTINNI   76 (197)
T ss_dssp             HHHHTCCEEEEESS-CCSC-CT-T-GGGCTTCSEEEEESC
T ss_pred             hhcCCccEEeccCC-CccC-hH-H-HhcCCCCCEEEccCC
Confidence            35777778887776 4443 33 2 667777777777776

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.20  E-value=9.5e-11  Score=116.44  Aligned_cols=79  Identities=20%  Similarity=0.267  Sum_probs=44.5

Q ss_pred             cccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccc
Q 038945           47 GFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELN  126 (363)
Q Consensus        47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~  126 (363)
                      .+++|+.|+++++. +..++ ..    ..+++|+.|++++| ++....+   +..+++|+.|++++|. +..++.     
T Consensus        41 ~L~~L~~L~l~~n~-i~~l~-~l----~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~~-----  104 (605)
T 1m9s_A           41 ELNSIDQIIANNSD-IKSVQ-GI----QYLPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDENK-IKDLSS-----  104 (605)
T ss_dssp             HHTTCCCCBCTTCC-CCCCT-TG----GGCTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSSC-CCCCTT-----
T ss_pred             cCCCCCEEECcCCC-CCCCh-HH----ccCCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCCC-CCCChh-----
Confidence            35666666666665 55543 12    35666777777666 3444333   5666677777776653 433321     


Q ss_pred             ccccccCCCCCccceeecccc
Q 038945          127 ADKEHLCPLFPKLFSLRLIDL  147 (363)
Q Consensus       127 ~~~~~~~~~l~~L~~L~l~~~  147 (363)
                            ...+++|+.|+++++
T Consensus       105 ------l~~l~~L~~L~Ls~N  119 (605)
T 1m9s_A          105 ------LKDLKKLKSLSLEHN  119 (605)
T ss_dssp             ------STTCTTCCEEECTTS
T ss_pred             ------hccCCCCCEEEecCC
Confidence                  234566666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.20  E-value=5.6e-11  Score=118.06  Aligned_cols=170  Identities=19%  Similarity=0.255  Sum_probs=123.7

Q ss_pred             ccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCC
Q 038945            9 LSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCK   88 (363)
Q Consensus         9 ~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~   88 (363)
                      ..+++|+.|.++.              ..+..++ .+..+++|+.|+|+++. +..++. .    ..+++|++|++++| 
T Consensus        40 ~~L~~L~~L~l~~--------------n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l----~~l~~L~~L~Ls~N-   97 (605)
T 1m9s_A           40 NELNSIDQIIANN--------------SDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-L----TNLKNLGWLFLDEN-   97 (605)
T ss_dssp             HHHTTCCCCBCTT--------------CCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-G----GGCTTCCEEECCSS-
T ss_pred             hcCCCCCEEECcC--------------CCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-h----ccCCCCCEEECcCC-
Confidence            4566777777761              1222333 46678999999999987 777554 3    58999999999998 


Q ss_pred             CCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhcc
Q 038945           89 NMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNF  168 (363)
Q Consensus        89 ~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~  168 (363)
                      .+.. ++.  +..+++|+.|++++|. +..++.           ...+++|+.|+++++. +..+               
T Consensus        98 ~l~~-l~~--l~~l~~L~~L~Ls~N~-l~~l~~-----------l~~l~~L~~L~Ls~N~-l~~l---------------  146 (605)
T 1m9s_A           98 KIKD-LSS--LKDLKKLKSLSLEHNG-ISDING-----------LVHLPQLESLYLGNNK-ITDI---------------  146 (605)
T ss_dssp             CCCC-CTT--STTCTTCCEEECTTSC-CCCCGG-----------GGGCTTCSEEECCSSC-CCCC---------------
T ss_pred             CCCC-Chh--hccCCCCCEEEecCCC-CCCCcc-----------ccCCCccCEEECCCCc-cCCc---------------
Confidence            5665 332  8889999999999875 554432           2367899999998763 3322               


Q ss_pred             ccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccc
Q 038945          169 IRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVN  248 (363)
Q Consensus       169 ~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~  248 (363)
                                            +.+..+++|+.|++++|. +..+++ +..+++|+.|++++| .+..++   .+..+++
T Consensus       147 ----------------------~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~---~l~~l~~  198 (605)
T 1m9s_A          147 ----------------------TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKN-HISDLR---ALAGLKN  198 (605)
T ss_dssp             ----------------------GGGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCBCG---GGTTCTT
T ss_pred             ----------------------hhhcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCC-CCCCCh---HHccCCC
Confidence                                  235567899999999986 444433 778999999999987 556553   2678899


Q ss_pred             cCeEeeccCcc
Q 038945          249 LERMKMSDCKM  259 (363)
Q Consensus       249 L~~L~l~~c~~  259 (363)
                      |+.|++++|+.
T Consensus       199 L~~L~L~~N~l  209 (605)
T 1m9s_A          199 LDVLELFSQEC  209 (605)
T ss_dssp             CSEEECCSEEE
T ss_pred             CCEEEccCCcC
Confidence            99999998864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.13  E-value=1.5e-09  Score=95.67  Aligned_cols=60  Identities=17%  Similarity=0.169  Sum_probs=31.3

Q ss_pred             cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccC-CCcCCCCcceeecccC
Q 038945          277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPKLNKVKPTEE  339 (363)
Q Consensus       277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~i~~~  339 (363)
                      .+++|+.|+++++ .++.++.+. +..+++|++|+++++ .++.++. .+..+++|+.|++++|
T Consensus       129 ~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          129 RLTKLKELRLNTN-QLQSIPAGA-FDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             cCCcccEEECcCC-cCCccCHHH-cCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC
Confidence            3455555555553 444444322 344566666666544 4444443 3345666666666666

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.12  E-value=3e-11  Score=112.69  Aligned_cols=248  Identities=13%  Similarity=0.015  Sum_probs=140.9

Q ss_pred             CCCceeEEEeeecccceeeeccCCCc-hhhhhhhcccccc-ccceEecccCcCcccccccCcCC---CCCCCCccEEEec
Q 038945           11 TPKLHKVQVTVKEEGELYHREGNLNS-TIQKCYIEMIGFR-DIENIKLSLFPRLKEIWHNQALP---VSFFNNLRHLVLD   85 (363)
Q Consensus        11 ~~~L~~l~~~~~~~~~~~~~~~~l~~-~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~l~---~~~l~~L~~L~l~   85 (363)
                      .++|++|+++.          ..+.. ....+...+..++ +|++|++++|. ++...... +.   ...+++|++|+++
T Consensus        21 ~~~L~~L~Ls~----------n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~-l~~~l~~~~~~L~~L~Ls   88 (362)
T 3goz_A           21 PHGVTSLDLSL----------NNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDE-LVQILAAIPANVTSLNLS   88 (362)
T ss_dssp             CTTCCEEECTT----------SCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHH-HHHHHHTSCTTCCEEECC
T ss_pred             CCCceEEEccC----------CCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHH-HHHHHhccCCCccEEECc
Confidence            44599999992          22222 1222335566677 89999999996 77632211 10   0123899999999


Q ss_pred             CCCCCcccCchhH---Hhhc-CCCCEEEEccCCCcceecccccccccccccCCC-CCccceeecccccccccccCcccch
Q 038945           86 DCKNMSSAIPANL---IRCL-NNLASLEVRNCDSLEEVLHLEELNADKEHLCPL-FPKLFSLRLIDLPKLKRFCNFTGNI  160 (363)
Q Consensus        86 ~c~~l~~~~p~~~---l~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~L~~l~~~~~~~  160 (363)
                      +| .+....+..+   +..+ ++|++|++++|. +...+...-     ...... .++|+.|+++++. +.+.      +
T Consensus        89 ~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l-----~~~l~~~~~~L~~L~Ls~N~-l~~~------~  154 (362)
T 3goz_A           89 GN-FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEF-----KQAFSNLPASITSLNLRGND-LGIK------S  154 (362)
T ss_dssp             SS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHH-----HHHHTTSCTTCCEEECTTSC-GGGS------C
T ss_pred             CC-cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHH-----HHHHHhCCCceeEEEccCCc-CCHH------H
Confidence            98 4666555442   2233 899999999876 544332110     000112 3589999999863 3321      0


Q ss_pred             hhhhhhccccchhhHHHHHHhhhhhhhhcccccccCC-CccEEEeccCcCcccccc----cccCC-CCCCEEeeccCcCc
Q 038945          161 IELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFA-NLKSLEISECSQLQKLVP----ASCYL-ENLATLEVSKCHGL  234 (363)
Q Consensus       161 L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~-~L~~L~l~~c~~l~~l~~----~~~~~-~~L~~L~l~~c~~l  234 (363)
                      ...+                         ...+..++ +|+.|++++|..-...+.    .+..+ ++|++|+++++. +
T Consensus       155 ~~~l-------------------------~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i  208 (362)
T 3goz_A          155 SDEL-------------------------IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-L  208 (362)
T ss_dssp             HHHH-------------------------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-G
T ss_pred             HHHH-------------------------HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-C
Confidence            0000                         11122334 899999998863322221    23345 589999998874 5


Q ss_pred             cccCch---hhhhh-ccccCeEeeccCcchhhhhccCccccccccccccccceecccccc-------cccccCCCCcccC
Q 038945          235 INLLTL---STSES-LVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLP-------SLTSFCLGNYALE  303 (363)
Q Consensus       235 ~~~~~~---~~~~~-l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~-------~L~~~~~~~~~~~  303 (363)
                      +.....   ..+.. .++|+.|++++|.. .+....   .-...+..+++|+.|++++|.       .+..+...  ...
T Consensus       209 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~---~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~--~~~  282 (362)
T 3goz_A          209 GLKSYAELAYIFSSIPNHVVSLNLCLNCL-HGPSLE---NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA--FPN  282 (362)
T ss_dssp             GGSCHHHHHHHHHHSCTTCCEEECCSSCC-CCCCHH---HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTT--STT
T ss_pred             ChhHHHHHHHHHhcCCCCceEEECcCCCC-CcHHHH---HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHH--hcc
Confidence            542211   11233 35899999998752 211000   000113457889999998874       12223222  445


Q ss_pred             CCCccEEeeccCC
Q 038945          304 FPSLEHVVVRQCP  316 (363)
Q Consensus       304 ~~~L~~L~l~~c~  316 (363)
                      +++|+.|+++++.
T Consensus       283 l~~L~~LdL~~N~  295 (362)
T 3goz_A          283 IQKIILVDKNGKE  295 (362)
T ss_dssp             CCEEEEECTTSCB
T ss_pred             CCceEEEecCCCc
Confidence            6778888887664

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.09  E-value=6.6e-10  Score=98.87  Aligned_cols=147  Identities=22%  Similarity=0.295  Sum_probs=77.3

Q ss_pred             cccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccc
Q 038945           45 MIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEE  124 (363)
Q Consensus        45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~  124 (363)
                      +..+++|++|+++++. ++.++ ..    ..+++|++|++++| ++.+..+   +..+++|++|+++++. +..++..  
T Consensus        37 ~~~l~~L~~L~l~~n~-i~~l~-~l----~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N~-l~~l~~~--  103 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSN-IQSLA-GM----QFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRNR-LKNLNGI--  103 (263)
T ss_dssp             HHHHTTCSEEECTTSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSSC-CSCCTTC--
T ss_pred             hhhcCcCcEEECcCCC-cccch-HH----hhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCCc-cCCcCcc--
Confidence            3445666666666664 55544 22    35666677776665 4454333   5666666666666653 4333211  


Q ss_pred             ccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEe
Q 038945          125 LNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEI  204 (363)
Q Consensus       125 ~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l  204 (363)
                               .. ++|+.|+++++ +++.+                                     +.+..+++|+.|++
T Consensus       104 ---------~~-~~L~~L~L~~N-~l~~~-------------------------------------~~l~~l~~L~~L~L  135 (263)
T 1xeu_A          104 ---------PS-ACLSRLFLDNN-ELRDT-------------------------------------DSLIHLKNLEILSI  135 (263)
T ss_dssp             ---------CC-SSCCEEECCSS-CCSBS-------------------------------------GGGTTCTTCCEEEC
T ss_pred             ---------cc-CcccEEEccCC-ccCCC-------------------------------------hhhcCcccccEEEC
Confidence                     11 56666666654 22221                                     12334466666666


Q ss_pred             ccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCc
Q 038945          205 SECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCK  258 (363)
Q Consensus       205 ~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  258 (363)
                      +++. ++.++ .+..+++|+.|+++++ .++.+   ..+..+++|+.|++++++
T Consensus       136 s~N~-i~~~~-~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          136 RNNK-LKSIV-MLGFLSKLEVLDLHGN-EITNT---GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             TTSC-CCBCG-GGGGCTTCCEEECTTS-CCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred             CCCc-CCCCh-HHccCCCCCEEECCCC-cCcch---HHhccCCCCCEEeCCCCc
Confidence            6654 33332 3445666666666664 23333   124455666666666554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.03  E-value=5.1e-09  Score=89.42  Aligned_cols=59  Identities=22%  Similarity=0.235  Sum_probs=27.9

Q ss_pred             CCccEEEeccCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCc
Q 038945          197 ANLKSLEISECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCK  258 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  258 (363)
                      ++|+.|+++++. +..++. .+..+++|++|+++++ .++.++. ..+..+++|+.|++++++
T Consensus       100 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          100 TQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred             cCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCH-HHhccCCCccEEEecCCC
Confidence            445555554443 222222 2344556666666554 3333332 223455666666666553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.02  E-value=3.8e-09  Score=104.01  Aligned_cols=182  Identities=16%  Similarity=0.133  Sum_probs=96.1

Q ss_pred             ccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccc
Q 038945           50 DIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADK  129 (363)
Q Consensus        50 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  129 (363)
                      +|++|+++++. ++.+|...      +++|++|+++++ +++. +|    ..+++|++|+++++ .+..++.        
T Consensus        60 ~L~~L~Ls~n~-L~~lp~~l------~~~L~~L~Ls~N-~l~~-ip----~~l~~L~~L~Ls~N-~l~~ip~--------  117 (571)
T 3cvr_A           60 QFSELQLNRLN-LSSLPDNL------PPQITVLEITQN-ALIS-LP----ELPASLEYLDACDN-RLSTLPE--------  117 (571)
T ss_dssp             TCSEEECCSSC-CSCCCSCC------CTTCSEEECCSS-CCSC-CC----CCCTTCCEEECCSS-CCSCCCC--------
T ss_pred             CccEEEeCCCC-CCccCHhH------cCCCCEEECcCC-CCcc-cc----cccCCCCEEEccCC-CCCCcch--------
Confidence            67888888775 66644333      467888888776 4553 44    23677888888775 3444432        


Q ss_pred             cccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcC
Q 038945          130 EHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQ  209 (363)
Q Consensus       130 ~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~  209 (363)
                           -..+|+.|+++++. ++.++.                                       .+++|+.|+++++. 
T Consensus       118 -----l~~~L~~L~Ls~N~-l~~lp~---------------------------------------~l~~L~~L~Ls~N~-  151 (571)
T 3cvr_A          118 -----LPASLKHLDVDNNQ-LTMLPE---------------------------------------LPALLEYINADNNQ-  151 (571)
T ss_dssp             -----CCTTCCEEECCSSC-CSCCCC---------------------------------------CCTTCCEEECCSSC-
T ss_pred             -----hhcCCCEEECCCCc-CCCCCC---------------------------------------cCccccEEeCCCCc-
Confidence                 01167777777542 332211                                       23677777777664 


Q ss_pred             cccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceeccccc
Q 038945          210 LQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCL  289 (363)
Q Consensus       210 l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c  289 (363)
                      ++.+|.   .+++|++|+++++ .++.+|.   +.  ++|+.|+++++. ++.++..  ..  ......+.|+.|+++++
T Consensus       152 l~~lp~---~l~~L~~L~Ls~N-~L~~lp~---l~--~~L~~L~Ls~N~-L~~lp~~--~~--~L~~~~~~L~~L~Ls~N  217 (571)
T 3cvr_A          152 LTMLPE---LPTSLEVLSVRNN-QLTFLPE---LP--ESLEALDVSTNL-LESLPAV--PV--RNHHSEETEIFFRCREN  217 (571)
T ss_dssp             CSCCCC---CCTTCCEEECCSS-CCSCCCC---CC--TTCCEEECCSSC-CSSCCCC--C----------CCEEEECCSS
T ss_pred             cCcCCC---cCCCcCEEECCCC-CCCCcch---hh--CCCCEEECcCCC-CCchhhH--HH--hhhcccccceEEecCCC
Confidence            333443   4567777777665 3444543   11  667777776653 2322110  00  00000111255666553


Q ss_pred             ccccccCCCCcccCCCCccEEeeccCC
Q 038945          290 PSLTSFCLGNYALEFPSLEHVVVRQCP  316 (363)
Q Consensus       290 ~~L~~~~~~~~~~~~~~L~~L~l~~c~  316 (363)
                       .++.++..  ...+++|+.|++++++
T Consensus       218 -~l~~lp~~--l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          218 -RITHIPEN--ILSLDPTCTIILEDNP  241 (571)
T ss_dssp             -CCCCCCGG--GGGSCTTEEEECCSSS
T ss_pred             -cceecCHH--HhcCCCCCEEEeeCCc
Confidence             44445443  4445566666665553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.97  E-value=7.9e-09  Score=89.83  Aligned_cols=150  Identities=17%  Similarity=0.091  Sum_probs=93.2

Q ss_pred             cceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccccccc
Q 038945           51 IENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKE  130 (363)
Q Consensus        51 L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  130 (363)
                      -+.++.++.. ++.+|.+.      .++|++|+++++ ++....|.. +..+++|++|+++++. +..++..        
T Consensus        21 ~~~v~c~~~~-l~~ip~~~------~~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~N~-l~~i~~~--------   82 (229)
T 3e6j_A           21 GTTVDCRSKR-HASVPAGI------PTNAQILYLHDN-QITKLEPGV-FDSLINLKELYLGSNQ-LGALPVG--------   82 (229)
T ss_dssp             TTEEECTTSC-CSSCCSCC------CTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTT--------
T ss_pred             CCEeEccCCC-cCccCCCC------CCCCCEEEcCCC-ccCccCHHH-hhCccCCcEEECCCCC-CCCcChh--------
Confidence            4556666654 66655433      367788888776 455544433 6777788888887754 4444311        


Q ss_pred             ccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCc
Q 038945          131 HLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQL  210 (363)
Q Consensus       131 ~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l  210 (363)
                       ....+++|+.|+++++ +++.+.                                   ...+..+++|+.|+++++. +
T Consensus        83 -~~~~l~~L~~L~Ls~N-~l~~l~-----------------------------------~~~~~~l~~L~~L~Ls~N~-l  124 (229)
T 3e6j_A           83 -VFDSLTQLTVLDLGTN-QLTVLP-----------------------------------SAVFDRLVHLKELFMCCNK-L  124 (229)
T ss_dssp             -TTTTCTTCCEEECCSS-CCCCCC-----------------------------------TTTTTTCTTCCEEECCSSC-C
T ss_pred             -hcccCCCcCEEECCCC-cCCccC-----------------------------------hhHhCcchhhCeEeccCCc-c
Confidence             1235677777777765 343321                                   1123455778888887765 4


Q ss_pred             ccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCc
Q 038945          211 QKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCK  258 (363)
Q Consensus       211 ~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  258 (363)
                      ..+|..+..+++|++|+++++ .++.++. ..+..+++|+.|++.+++
T Consensus       125 ~~lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          125 TELPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CSCCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred             cccCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCC
Confidence            566666777888888888775 5666554 335677888888887755

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.96  E-value=3e-09  Score=97.71  Aligned_cols=102  Identities=17%  Similarity=0.218  Sum_probs=69.7

Q ss_pred             CCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccc-eecccccccccccCCC
Q 038945          220 LENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLE-YLGLDCLPSLTSFCLG  298 (363)
Q Consensus       220 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~-~L~l~~c~~L~~~~~~  298 (363)
                      +++|+.++++++ .++.++.. .+..+++|+.+++.+.  ++.+       ...++..+++|+ .+.+.+  +++.+...
T Consensus       225 ~~~L~~l~L~~n-~i~~I~~~-aF~~~~~L~~l~l~~n--i~~I-------~~~aF~~~~~L~~~l~l~~--~l~~I~~~  291 (329)
T 3sb4_A          225 MPNLVSLDISKT-NATTIPDF-TFAQKKYLLKIKLPHN--LKTI-------GQRVFSNCGRLAGTLELPA--SVTAIEFG  291 (329)
T ss_dssp             CTTCCEEECTTB-CCCEECTT-TTTTCTTCCEEECCTT--CCEE-------CTTTTTTCTTCCEEEEECT--TCCEECTT
T ss_pred             cCCCeEEECCCC-CcceecHh-hhhCCCCCCEEECCcc--ccee-------hHHHhhCChhccEEEEEcc--cceEEchh
Confidence            678888888764 36666543 3567888888888764  4443       222355678888 888876  67777665


Q ss_pred             CcccCCCCccEEeeccCCCcccccCCCc-CCCCcceeec
Q 038945          299 NYALEFPSLEHVVVRQCPTMKIFSQGVV-DAPKLNKVKP  336 (363)
Q Consensus       299 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~i  336 (363)
                      . +..|++|+.+++.+ ++++.++.... ++++|+.|..
T Consensus       292 a-F~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          292 A-FMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             T-TTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred             h-hhCCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence            4 67788888888743 46777766444 7888887753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.95  E-value=8.1e-09  Score=89.74  Aligned_cols=129  Identities=18%  Similarity=0.130  Sum_probs=102.1

Q ss_pred             CCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccc
Q 038945          197 ANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCI  276 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  276 (363)
                      ++|+.|+++++..-...+..+..+++|++|+++++ .++.++. ..+..+++|+.|+++++. ++.+.       ...+.
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~-~~~~~l~~L~~L~Ls~N~-l~~l~-------~~~~~  109 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPV-GVFDSLTQLTVLDLGTNQ-LTVLP-------SAVFD  109 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCC-------TTTTT
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcCh-hhcccCCCcCEEECCCCc-CCccC-------hhHhC
Confidence            78999999998755444666788999999999987 4666654 335789999999999974 44332       12245


Q ss_pred             cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC-CcCCCCcceeecccC
Q 038945          277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEE  339 (363)
Q Consensus       277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~i~~~  339 (363)
                      .+++|+.|+++++ .++.++..  +..+++|+.|+++++ +++.++.+ +..+++|+.|++++|
T Consensus       110 ~l~~L~~L~Ls~N-~l~~lp~~--~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          110 RLVHLKELFMCCN-KLTELPRG--IERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             TCTTCCEEECCSS-CCCSCCTT--GGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             cchhhCeEeccCC-cccccCcc--cccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC
Confidence            6899999999986 67777766  788999999999776 78877754 558999999999999

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.93  E-value=1.1e-11  Score=122.43  Aligned_cols=121  Identities=18%  Similarity=0.117  Sum_probs=90.6

Q ss_pred             CCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccc
Q 038945          197 ANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCI  276 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  276 (363)
                      ..|+.|+++++. ++.+|. +..+++|+.|+++++ .++.+|..  ++.+++|+.|+++++. ++.++         .+.
T Consensus       441 ~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~--~~~l~~L~~L~Ls~N~-l~~lp---------~l~  505 (567)
T 1dce_A          441 ADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHN-RLRALPPA--LAALRCLEVLQASDNA-LENVD---------GVA  505 (567)
T ss_dssp             TTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSS-CCCCCCGG--GGGCTTCCEEECCSSC-CCCCG---------GGT
T ss_pred             cCceEEEecCCC-CCCCcC-ccccccCcEeecCcc-cccccchh--hhcCCCCCEEECCCCC-CCCCc---------ccC
Confidence            358999999884 566765 788999999999986 56677653  7789999999999875 33332         356


Q ss_pred             cccccceeccccccccccc--CCCCcccCCCCccEEeeccCCCcccccCCCc----CCCCcceeec
Q 038945          277 VFRKLEYLGLDCLPSLTSF--CLGNYALEFPSLEHVVVRQCPTMKIFSQGVV----DAPKLNKVKP  336 (363)
Q Consensus       277 ~l~~L~~L~l~~c~~L~~~--~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~----~~~~L~~L~i  336 (363)
                      .+++|+.|+++++ .++.+  +..  +..+++|+.|+++++ .++..|....    .+|+|+.|++
T Consensus       506 ~l~~L~~L~Ls~N-~l~~~~~p~~--l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          506 NLPRLQELLLCNN-RLQQSAAIQP--LVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             TCSSCCEEECCSS-CCCSSSTTGG--GGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCcEEECCCC-CCCCCCCcHH--HhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence            7889999999886 56666  444  777899999999776 5666665443    4788888853

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.93  E-value=1.6e-08  Score=87.27  Aligned_cols=64  Identities=13%  Similarity=0.059  Sum_probs=36.3

Q ss_pred             cccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCc
Q 038945          193 NKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCK  258 (363)
Q Consensus       193 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  258 (363)
                      +..+++|+.|+++++......+..+..+++|++|+++++ .++.++. ..+..+++|+.|++++++
T Consensus       101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAP-GAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCT-TTTTTCTTCCEEECCSCC
T ss_pred             hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECH-HHhcCCCCCCEEEecCcC
Confidence            344466666666666533333445556677777777664 3444422 224566777777776654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.92  E-value=5e-09  Score=93.10  Aligned_cols=147  Identities=14%  Similarity=0.130  Sum_probs=108.3

Q ss_pred             cccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCC
Q 038945            8 ILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDC   87 (363)
Q Consensus         8 ~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c   87 (363)
                      +..+++|++|+++.          .    .+..++ .+..+++|++|+++++. ++.++. .    ..+++|++|++++|
T Consensus        37 ~~~l~~L~~L~l~~----------n----~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l----~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           37 QKELSGVQNFNGDN----------S----NIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-L----KDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHTTCSEEECTT----------S----CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-G----TTCSSCCEEECCSS
T ss_pred             hhhcCcCcEEECcC----------C----Ccccch-HHhhCCCCCEEECCCCc-cCCChh-h----ccCCCCCEEECCCC
Confidence            56678899998882          1    222333 46678999999999997 887654 3    58999999999998


Q ss_pred             CCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhc
Q 038945           88 KNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECN  167 (363)
Q Consensus        88 ~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~  167 (363)
                       ++....+   +.. ++|++|++++|. +..++.           ...+++|+.|+++++. ++++              
T Consensus        96 -~l~~l~~---~~~-~~L~~L~L~~N~-l~~~~~-----------l~~l~~L~~L~Ls~N~-i~~~--------------  143 (263)
T 1xeu_A           96 -RLKNLNG---IPS-ACLSRLFLDNNE-LRDTDS-----------LIHLKNLEILSIRNNK-LKSI--------------  143 (263)
T ss_dssp             -CCSCCTT---CCC-SSCCEEECCSSC-CSBSGG-----------GTTCTTCCEEECTTSC-CCBC--------------
T ss_pred             -ccCCcCc---ccc-CcccEEEccCCc-cCCChh-----------hcCcccccEEECCCCc-CCCC--------------
Confidence             5665433   333 899999999874 555432           3468899999998763 4332              


Q ss_pred             cccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCc
Q 038945          168 FIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCH  232 (363)
Q Consensus       168 ~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~  232 (363)
                                             +.+..+++|+.|+++++. +..+ ..+..+++|+.|++++++
T Consensus       144 -----------------------~~l~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          144 -----------------------VMLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             -----------------------GGGGGCTTCCEEECTTSC-CCBC-TTSTTCCCCCEEEEEEEE
T ss_pred             -----------------------hHHccCCCCCEEECCCCc-Ccch-HHhccCCCCCEEeCCCCc
Confidence                                   235567999999999986 4444 566789999999999864

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.91  E-value=7.6e-09  Score=89.36  Aligned_cols=129  Identities=10%  Similarity=0.175  Sum_probs=98.2

Q ss_pred             CCccEEEeccCcCccccc-ccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945          197 ANLKSLEISECSQLQKLV-PASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC  275 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  275 (363)
                      +.|+.|+++++. +..++ ..+..+++|+.|+++++ .++.+.. ..+..+++|++|+++++. ++.+.       ...+
T Consensus        32 ~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~l~-------~~~f  100 (220)
T 2v9t_B           32 ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNN-QISELAP-DAFQGLRSLNSLVLYGNK-ITELP-------KSLF  100 (220)
T ss_dssp             TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSS-CCCEECT-TTTTTCSSCCEEECCSSC-CCCCC-------TTTT
T ss_pred             cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCC-cCCCcCH-HHhhCCcCCCEEECCCCc-CCccC-------HhHc
Confidence            689999999986 44444 46778999999999987 4555533 236789999999999975 33332       1224


Q ss_pred             ccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC-CcCCCCcceeecccC
Q 038945          276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEE  339 (363)
Q Consensus       276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~i~~~  339 (363)
                      ..+++|++|+++++ .++.+.... +..+++|++|+++++ .++.++.+ +..+++|+.|++++|
T Consensus       101 ~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          101 EGLFSLQLLLLNAN-KINCLRVDA-FQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCCCCCCEEECCCC-CCCEeCHHH-cCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence            56899999999996 566665543 667899999999776 67777664 568999999999999

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.89  E-value=2.5e-09  Score=88.08  Aligned_cols=130  Identities=16%  Similarity=0.203  Sum_probs=98.9

Q ss_pred             CCCccEEEeccCcCc-ccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccc
Q 038945          196 FANLKSLEISECSQL-QKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAED  274 (363)
Q Consensus       196 l~~L~~L~l~~c~~l-~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  274 (363)
                      +++|+.|++++|..- ..++..+..+++|+.|++++|. ++.+   ..+..+++|+.|++++|.....+.        ..
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~--------~~   90 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFGGLD--------ML   90 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCSCCC--------HH
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCchHHH--------HH
Confidence            378999999998743 2677777889999999999985 6655   336789999999999986322111        11


Q ss_pred             cccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccC----CCcCCCCcceeecccC
Q 038945          275 CIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ----GVVDAPKLNKVKPTEE  339 (363)
Q Consensus       275 ~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~~~~L~~L~i~~~  339 (363)
                      +..+++|++|+++++ .++.++.......+++|+.|++++| .++.++.    .+..+++|+.|+++++
T Consensus        91 ~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           91 AEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             HHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             HhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence            335899999999997 6776653222677999999999877 6666665    5668999999999998

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.87  E-value=2.1e-09  Score=86.73  Aligned_cols=129  Identities=16%  Similarity=0.174  Sum_probs=96.1

Q ss_pred             CCCccEEEeccCcCc-ccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccc
Q 038945          196 FANLKSLEISECSQL-QKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAED  274 (363)
Q Consensus       196 l~~L~~L~l~~c~~l-~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  274 (363)
                      .++|+.|++++|..- ..++..+..+++|+.|++++| .++.+   ..+..+++|+.|++++|..-..++.        .
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~--------~   83 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSGGLEV--------L   83 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCSCTHH--------H
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccchHHH--------H
Confidence            378999999999743 367777788999999999987 55555   3367889999999999863221211        1


Q ss_pred             cccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccC----CCcCCCCcceeeccc
Q 038945          275 CIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ----GVVDAPKLNKVKPTE  338 (363)
Q Consensus       275 ~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~~~~L~~L~i~~  338 (363)
                      +..+++|++|+++++ .++.++.......+++|++|++++| .++..+.    .+..+++|+.|++++
T Consensus        84 ~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           84 AEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             hhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence            345899999999997 4666542112677999999999887 6776665    456899999999874

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.87  E-value=2.7e-08  Score=97.92  Aligned_cols=179  Identities=17%  Similarity=0.133  Sum_probs=120.3

Q ss_pred             CceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcc
Q 038945           13 KLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSS   92 (363)
Q Consensus        13 ~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~   92 (363)
                      +|+.|+++.          .    .+..+|..+  +++|++|+++++. ++.+|       ..+++|++|++++| +++.
T Consensus        60 ~L~~L~Ls~----------n----~L~~lp~~l--~~~L~~L~Ls~N~-l~~ip-------~~l~~L~~L~Ls~N-~l~~  114 (571)
T 3cvr_A           60 QFSELQLNR----------L----NLSSLPDNL--PPQITVLEITQNA-LISLP-------ELPASLEYLDACDN-RLST  114 (571)
T ss_dssp             TCSEEECCS----------S----CCSCCCSCC--CTTCSEEECCSSC-CSCCC-------CCCTTCCEEECCSS-CCSC
T ss_pred             CccEEEeCC----------C----CCCccCHhH--cCCCCEEECcCCC-Ccccc-------cccCCCCEEEccCC-CCCC
Confidence            788888881          2    233355544  3789999999987 87755       35799999999998 5666


Q ss_pred             cCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccch
Q 038945           93 AIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIK  172 (363)
Q Consensus        93 ~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~  172 (363)
                       +|.  +..  +|++|+++++. +..++.             .+++|+.|+++++. ++.++.                 
T Consensus       115 -ip~--l~~--~L~~L~Ls~N~-l~~lp~-------------~l~~L~~L~Ls~N~-l~~lp~-----------------  157 (571)
T 3cvr_A          115 -LPE--LPA--SLKHLDVDNNQ-LTMLPE-------------LPALLEYINADNNQ-LTMLPE-----------------  157 (571)
T ss_dssp             -CCC--CCT--TCCEEECCSSC-CSCCCC-------------CCTTCCEEECCSSC-CSCCCC-----------------
T ss_pred             -cch--hhc--CCCEEECCCCc-CCCCCC-------------cCccccEEeCCCCc-cCcCCC-----------------
Confidence             554  333  89999999864 554442             47889999998763 433311                 


Q ss_pred             hhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhh----hccc
Q 038945          173 SNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSE----SLVN  248 (363)
Q Consensus       173 ~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~----~l~~  248 (363)
                                            .+++|+.|++++|. +..+|. +.  ++|+.|+++++ .++.+|.  +..    ..+.
T Consensus       158 ----------------------~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~--~~~~L~~~~~~  208 (571)
T 3cvr_A          158 ----------------------LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTN-LLESLPA--VPVRNHHSEET  208 (571)
T ss_dssp             ----------------------CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSS-CCSSCCC--CC--------C
T ss_pred             ----------------------cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCC-CCCchhh--HHHhhhccccc
Confidence                                  23788999998885 455655 33  88999999886 5666664  222    1122


Q ss_pred             cCeEeeccCcchhhhhccCccccccccccccccceeccccccc
Q 038945          249 LERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPS  291 (363)
Q Consensus       249 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~  291 (363)
                      |+.|++++|. ++.++.        .+..+++|+.|++++++-
T Consensus       209 L~~L~Ls~N~-l~~lp~--------~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          209 EIFFRCRENR-ITHIPE--------NILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             CEEEECCSSC-CCCCCG--------GGGGSCTTEEEECCSSSC
T ss_pred             ceEEecCCCc-ceecCH--------HHhcCCCCCEEEeeCCcC
Confidence            3888888874 343322        244588899999988743

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.83  E-value=5.9e-08  Score=83.73  Aligned_cols=59  Identities=25%  Similarity=0.328  Sum_probs=30.8

Q ss_pred             cccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccC
Q 038945           49 RDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNC  113 (363)
Q Consensus        49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~  113 (363)
                      +.|+.|+++++. ++.++... +  ..+++|++|+++++ .+....|.. +..+++|++|+++++
T Consensus        32 ~~l~~L~l~~n~-i~~i~~~~-~--~~l~~L~~L~Ls~N-~i~~~~~~~-~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           32 ETITEIRLEQNT-IKVIPPGA-F--SPYKKLRRIDLSNN-QISELAPDA-FQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TTCCEEECCSSC-CCEECTTS-S--TTCTTCCEEECCSS-CCCEECTTT-TTTCSSCCEEECCSS
T ss_pred             cCCCEEECCCCc-CCCcCHhH-h--hCCCCCCEEECCCC-cCCCcCHHH-hhCCcCCCEEECCCC
Confidence            456666666654 55444322 1  34566666666655 344433333 555666666666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.82  E-value=9e-09  Score=84.75  Aligned_cols=60  Identities=27%  Similarity=0.293  Sum_probs=29.9

Q ss_pred             CCccEEEeccCcCccccc--ccccCCCCCCEEeeccCcCccccCc--hhhhhhccccCeEeeccCc
Q 038945          197 ANLKSLEISECSQLQKLV--PASCYLENLATLEVSKCHGLINLLT--LSTSESLVNLERMKMSDCK  258 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~l~~c~  258 (363)
                      ++|+.|++++|. +..++  ..+..+++|++|+++++ .+..++.  ...+..+++|+.|++++|.
T Consensus        95 ~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           95 PNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             TTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             CCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            444444444442 22222  33445566666666665 2333332  1234566677777766664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.81  E-value=3.1e-08  Score=92.08  Aligned_cols=166  Identities=16%  Similarity=0.133  Sum_probs=113.3

Q ss_pred             hhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCc
Q 038945           37 TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSL  116 (363)
Q Consensus        37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l  116 (363)
                      .+..+|..+  .+.++.|+++++. ++.++... +. ..+++|++|+++++ ++....+.. +..+++|++|+++++. +
T Consensus        29 ~l~~iP~~~--~~~l~~L~Ls~N~-l~~l~~~~-~~-~~l~~L~~L~L~~N-~i~~i~~~~-~~~l~~L~~L~Ls~N~-l  100 (361)
T 2xot_A           29 QLPNVPQSL--PSYTALLDLSHNN-LSRLRAEW-TP-TRLTNLHSLLLSHN-HLNFISSEA-FVPVPNLRYLDLSSNH-L  100 (361)
T ss_dssp             CCSSCCSSC--CTTCSEEECCSSC-CCEECTTS-SS-SCCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSC-C
T ss_pred             CcCccCccC--CCCCCEEECCCCC-CCccChhh-hh-hcccccCEEECCCC-cCCccChhh-ccCCCCCCEEECCCCc-C
Confidence            344456554  2568999999986 88766554 21 16899999999988 566645443 8889999999999864 6


Q ss_pred             ceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccC
Q 038945          117 EEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVF  196 (363)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l  196 (363)
                      ..++..         ....+++|+.|+++++. +..+.                                   ...+..+
T Consensus       101 ~~~~~~---------~~~~l~~L~~L~L~~N~-i~~~~-----------------------------------~~~~~~l  135 (361)
T 2xot_A          101 HTLDEF---------LFSDLQALEVLLLYNNH-IVVVD-----------------------------------RNAFEDM  135 (361)
T ss_dssp             CEECTT---------TTTTCTTCCEEECCSSC-CCEEC-----------------------------------TTTTTTC
T ss_pred             CcCCHH---------HhCCCcCCCEEECCCCc-ccEEC-----------------------------------HHHhCCc
Confidence            555421         13467889999998763 33221                                   2335667


Q ss_pred             CCccEEEeccCcCcccccccc----cCCCCCCEEeeccCcCccccCchhhhhhccc--cCeEeeccCc
Q 038945          197 ANLKSLEISECSQLQKLVPAS----CYLENLATLEVSKCHGLINLLTLSTSESLVN--LERMKMSDCK  258 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l~~~~----~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~--L~~L~l~~c~  258 (363)
                      ++|+.|+++++. +..++...    ..+++|+.|+++++ .++.++.. .+..++.  ++.|++.+++
T Consensus       136 ~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          136 AQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLT-DLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             TTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSS-CCCCCCHH-HHHHSCHHHHTTEECCSSC
T ss_pred             ccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHH-HhhhccHhhcceEEecCCC
Confidence            899999999885 55555443    46899999999885 56666532 3556666  4888888755

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.76  E-value=5.4e-08  Score=82.05  Aligned_cols=125  Identities=10%  Similarity=0.072  Sum_probs=93.8

Q ss_pred             cEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccccc
Q 038945          200 KSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFR  279 (363)
Q Consensus       200 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~  279 (363)
                      +.+++++.. ++.+|..+  ..+++.|+++++ .++.++..+++..+++|+.|+++++. ++.+       ....+..++
T Consensus        11 ~~l~~s~~~-l~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~-------~~~~~~~l~   78 (192)
T 1w8a_A           11 TTVDCTGRG-LKEIPRDI--PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGI-------EPNAFEGAS   78 (192)
T ss_dssp             TEEECTTSC-CSSCCSCC--CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCB-------CTTTTTTCT
T ss_pred             CEEEcCCCC-cCcCccCC--CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCc-------CHhHcCCcc
Confidence            677777764 56666654  449999999986 56666654456789999999999875 3322       123356789


Q ss_pred             ccceecccccccccccCCCCcccCCCCccEEeeccCCCcccc-cCCCcCCCCcceeecccC
Q 038945          280 KLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIF-SQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       280 ~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~i~~~  339 (363)
                      +|++|+++++ .++.++... +..+++|++|+++++ +++.+ |..+..+++|+.|++++|
T Consensus        79 ~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           79 HIQELQLGEN-KIKEISNKM-FLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             TCCEEECCSC-CCCEECSSS-STTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTC
T ss_pred             cCCEEECCCC-cCCccCHHH-hcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCC
Confidence            9999999986 567666543 567899999999777 55544 667779999999999999

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.75  E-value=4.1e-08  Score=91.29  Aligned_cols=111  Identities=16%  Similarity=0.128  Sum_probs=61.5

Q ss_pred             ccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccC
Q 038945          217 SCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFC  296 (363)
Q Consensus       217 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~  296 (363)
                      +..+++|++|+++++ .++.++. ..+..+++|+.|+++++.. ..+       ....+..+++|+.|+++++ .++.++
T Consensus        84 ~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~i-~~~-------~~~~~~~l~~L~~L~L~~N-~l~~l~  152 (361)
T 2xot_A           84 FVPVPNLRYLDLSSN-HLHTLDE-FLFSDLQALEVLLLYNNHI-VVV-------DRNAFEDMAQLQKLYLSQN-QISRFP  152 (361)
T ss_dssp             TTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSCC-CEE-------CTTTTTTCTTCCEEECCSS-CCCSCC
T ss_pred             ccCCCCCCEEECCCC-cCCcCCH-HHhCCCcCCCEEECCCCcc-cEE-------CHHHhCCcccCCEEECCCC-cCCeeC
Confidence            445555666666554 3444432 1244566666666666542 211       1112345667777777664 455555


Q ss_pred             CCCc--ccCCCCccEEeeccCCCcccccC-CCcCCCC--cceeecccC
Q 038945          297 LGNY--ALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPK--LNKVKPTEE  339 (363)
Q Consensus       297 ~~~~--~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~--L~~L~i~~~  339 (363)
                      ....  ...+++|+.|+++++ .++.++. .+..++.  ++.|++++|
T Consensus       153 ~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          153 VELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             GGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             HHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCC
Confidence            4310  035788888888665 6666664 3346665  488999999

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.75  E-value=4.9e-08  Score=84.20  Aligned_cols=129  Identities=10%  Similarity=0.111  Sum_probs=97.7

Q ss_pred             CCccEEEeccCcCcccc-c-ccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccc
Q 038945          197 ANLKSLEISECSQLQKL-V-PASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAED  274 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l-~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  274 (363)
                      +.++.|+++++. +..+ + ..+..+++|++|+++++ .++.++. ..+..+++|+.|+++++.. ..+       ....
T Consensus        32 ~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~-~~~~~l~~L~~L~Ls~N~l-~~~-------~~~~  100 (220)
T 2v70_A           32 QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNN-KITDIEE-GAFEGASGVNEILLTSNRL-ENV-------QHKM  100 (220)
T ss_dssp             TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSCC-CCC-------CGGG
T ss_pred             CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCC-cCCEECH-HHhCCCCCCCEEECCCCcc-Ccc-------CHhH
Confidence            567899999986 4444 2 23678999999999986 4666654 2367899999999999753 322       1223


Q ss_pred             cccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccc-cCCCcCCCCcceeecccC
Q 038945          275 CIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIF-SQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       275 ~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~i~~~  339 (363)
                      +..+++|++|+++++ .++.+.... +..+++|+.|+++++ .++.+ |..+..+++|+.|++++|
T Consensus       101 ~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          101 FKGLESLKTLMLRSN-RITCVGNDS-FIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             GTTCSSCCEEECTTS-CCCCBCTTS-STTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             hcCCcCCCEEECCCC-cCCeECHhH-cCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCc
Confidence            567899999999996 566664443 667899999999776 66666 567779999999999999

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.75  E-value=1.5e-08  Score=81.65  Aligned_cols=57  Identities=26%  Similarity=0.311  Sum_probs=29.2

Q ss_pred             CCccEEEeccCcCccccc--ccccCCCCCCEEeeccCcCccccCc--hhhhhhccccCeEeec
Q 038945          197 ANLKSLEISECSQLQKLV--PASCYLENLATLEVSKCHGLINLLT--LSTSESLVNLERMKMS  255 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~l~  255 (363)
                      ++|+.|++++|. +..++  ..+..+++|++|+++++ .++..+.  ...+..+++|+.|+++
T Consensus        88 ~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           88 PNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            444444444443 22221  33455666666666665 3444443  1235667777777665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.68  E-value=1.6e-07  Score=79.99  Aligned_cols=129  Identities=19%  Similarity=0.168  Sum_probs=95.6

Q ss_pred             CCccEEEeccCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945          197 ANLKSLEISECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC  275 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  275 (363)
                      ++|+.|+++++. ++.++. .+..+++|++|+++++ .++.++. ..+..+++|++|+++++. +..+.       ...+
T Consensus        28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~-------~~~~   96 (208)
T 2o6s_A           28 AQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGN-KLQSLPN-GVFNKLTSLTYLNLSTNQ-LQSLP-------NGVF   96 (208)
T ss_dssp             TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCC-------TTTT
T ss_pred             CCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCC-ccCccCh-hhcCCCCCcCEEECCCCc-CCccC-------HhHh
Confidence            689999999985 444443 4568899999999986 5666653 235678999999999875 33221       1224


Q ss_pred             ccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC-CcCCCCcceeecccC
Q 038945          276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEE  339 (363)
Q Consensus       276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~i~~~  339 (363)
                      ..+++|++|+++++ .++.++... +..+++|++|+++++ .++.++.. +..+++|+.|++++|
T Consensus        97 ~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           97 DKLTQLKELALNTN-QLQSLPDGV-FDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             cCccCCCEEEcCCC-cCcccCHhH-hccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCC
Confidence            56889999999986 566665542 466899999999776 67777665 568999999999998

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.66  E-value=1.4e-07  Score=79.68  Aligned_cols=123  Identities=12%  Similarity=0.111  Sum_probs=92.7

Q ss_pred             cEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccccc
Q 038945          200 KSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFR  279 (363)
Q Consensus       200 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~  279 (363)
                      +.+++++.. ++.+|..+  .++|+.|+++++ .++.+|  ..+..+++|+.|+++++. ++.+       ....+..++
T Consensus        13 ~~l~~~~~~-l~~ip~~~--~~~l~~L~L~~n-~i~~ip--~~~~~l~~L~~L~Ls~N~-i~~i-------~~~~f~~l~   78 (193)
T 2wfh_A           13 TVVRCSNKG-LKVLPKGI--PRDVTELYLDGN-QFTLVP--KELSNYKHLTLIDLSNNR-ISTL-------SNQSFSNMT   78 (193)
T ss_dssp             TEEECTTSC-CSSCCSCC--CTTCCEEECCSS-CCCSCC--GGGGGCTTCCEEECCSSC-CCCC-------CTTTTTTCT
T ss_pred             CEEEcCCCC-CCcCCCCC--CCCCCEEECCCC-cCchhH--HHhhcccCCCEEECCCCc-CCEe-------CHhHccCCC
Confidence            456666553 56666543  579999999986 566776  347889999999999875 3332       222356789


Q ss_pred             ccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC-CcCCCCcceeecccC
Q 038945          280 KLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEE  339 (363)
Q Consensus       280 ~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~i~~~  339 (363)
                      +|++|+++++ .++.++... +..+++|+.|+++++ .++.++.+ +..+++|+.|++++|
T Consensus        79 ~L~~L~Ls~N-~l~~i~~~~-f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           79 QLLTLILSYN-RLRCIPPRT-FDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             TCCEEECCSS-CCCBCCTTT-TTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEECCCC-ccCEeCHHH-hCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCC
Confidence            9999999986 577776653 667899999999776 78888775 558999999999999

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.65  E-value=2.6e-08  Score=82.74  Aligned_cols=133  Identities=11%  Similarity=0.059  Sum_probs=97.6

Q ss_pred             ccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccc
Q 038945          192 SNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEE  271 (363)
Q Consensus       192 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  271 (363)
                      ....+.+|+.|+++++. ++.++......++|+.|+++++ .++.++   .+..+++|+.|+++++. +..++.      
T Consensus        14 ~~~~~~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~Ls~N-~l~~~~---~l~~l~~L~~L~Ls~N~-l~~~~~------   81 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDN-EIRKLD---GFPLLRRLKTLLVNNNR-ICRIGE------   81 (176)
T ss_dssp             EEECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSS-CCCEEC---CCCCCSSCCEEECCSSC-CCEECS------
T ss_pred             hcCCcCCceEEEeeCCC-CchhHHhhhcCCCCCEEECCCC-CCCccc---ccccCCCCCEEECCCCc-ccccCc------
Confidence            34556899999999985 5555443334459999999997 465552   25788999999999985 333311      


Q ss_pred             ccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC----CcCCCCcceeecccC
Q 038945          272 AEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG----VVDAPKLNKVKPTEE  339 (363)
Q Consensus       272 ~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~----~~~~~~L~~L~i~~~  339 (363)
                       ..+..+++|++|+++++ .++.++.......+++|++|+++++ .++.+|..    +..+++|+.|+++++
T Consensus        82 -~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           82 -GLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             -CHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             -chhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence             11356899999999986 5666665222667999999999877 56667664    669999999999988

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.63  E-value=9.6e-08  Score=79.23  Aligned_cols=82  Identities=15%  Similarity=0.097  Sum_probs=45.2

Q ss_pred             cccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccc
Q 038945           47 GFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELN  126 (363)
Q Consensus        47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~  126 (363)
                      .+++|++|+++++. ++.++...    ...++|++|++++| .+... +  .++.+++|++|+++++. +..++...   
T Consensus        17 ~~~~L~~L~l~~n~-l~~i~~~~----~~~~~L~~L~Ls~N-~l~~~-~--~l~~l~~L~~L~Ls~N~-l~~~~~~~---   83 (176)
T 1a9n_A           17 NAVRDRELDLRGYK-IPVIENLG----ATLDQFDAIDFSDN-EIRKL-D--GFPLLRRLKTLLVNNNR-ICRIGEGL---   83 (176)
T ss_dssp             CTTSCEEEECTTSC-CCSCCCGG----GGTTCCSEEECCSS-CCCEE-C--CCCCCSSCCEEECCSSC-CCEECSCH---
T ss_pred             CcCCceEEEeeCCC-CchhHHhh----hcCCCCCEEECCCC-CCCcc-c--ccccCCCCCEEECCCCc-ccccCcch---
Confidence            45667777777765 66543222    22347777777776 45543 2  16667777777777653 44443100   


Q ss_pred             ccccccCCCCCccceeecccc
Q 038945          127 ADKEHLCPLFPKLFSLRLIDL  147 (363)
Q Consensus       127 ~~~~~~~~~l~~L~~L~l~~~  147 (363)
                            ...+++|+.|+++++
T Consensus        84 ------~~~l~~L~~L~L~~N   98 (176)
T 1a9n_A           84 ------DQALPDLTELILTNN   98 (176)
T ss_dssp             ------HHHCTTCCEEECCSC
T ss_pred             ------hhcCCCCCEEECCCC
Confidence                  113556666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.55  E-value=5e-06  Score=78.27  Aligned_cols=60  Identities=13%  Similarity=0.235  Sum_probs=30.1

Q ss_pred             ccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCccee
Q 038945           50 DIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEV  119 (363)
Q Consensus        50 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~  119 (363)
                      +|+.+.+.+.  ++.+.... .  .. .+|+.+.+.+  .+.. ++...+..|++|+.+++.++ ++..+
T Consensus       136 ~L~~i~l~~~--i~~I~~~a-F--~~-~~L~~i~lp~--~l~~-I~~~aF~~c~~L~~l~l~~n-~l~~I  195 (401)
T 4fdw_A          136 QIAKVVLNEG--LKSIGDMA-F--FN-STVQEIVFPS--TLEQ-LKEDIFYYCYNLKKADLSKT-KITKL  195 (401)
T ss_dssp             CCSEEECCTT--CCEECTTT-T--TT-CCCCEEECCT--TCCE-ECSSTTTTCTTCCEEECTTS-CCSEE
T ss_pred             CccEEEeCCC--ccEECHHh-c--CC-CCceEEEeCC--CccE-ehHHHhhCcccCCeeecCCC-cceEe
Confidence            4666666542  44433322 1  11 3566666654  3443 33333666777777777543 34444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.54  E-value=7.8e-07  Score=81.42  Aligned_cols=101  Identities=14%  Similarity=0.079  Sum_probs=75.5

Q ss_pred             CCCccEEEeccCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccC-eEeeccCcchhhhhccCcccccc
Q 038945          196 FANLKSLEISECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLE-RMKMSDCKMMEEIIQSQVGEEAE  273 (363)
Q Consensus       196 l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~~  273 (363)
                      +++|++|+++++. ++.++. .+..+.+|+.+++.+.  ++.++.. .+..+++|+ .+++.+  .++.+       ...
T Consensus       225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~-aF~~~~~L~~~l~l~~--~l~~I-------~~~  291 (329)
T 3sb4_A          225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQR-VFSNCGRLAGTLELPA--SVTAI-------EFG  291 (329)
T ss_dssp             CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTT-TTTTCTTCCEEEEECT--TCCEE-------CTT
T ss_pred             cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHH-HhhCChhccEEEEEcc--cceEE-------chh
Confidence            5899999999865 555554 4678999999999873  7777653 467899999 999987  44444       223


Q ss_pred             ccccccccceecccccccccccCCCCcccCCCCccEEe
Q 038945          274 DCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVV  311 (363)
Q Consensus       274 ~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~  311 (363)
                      ++..+++|+.+++.+ ..++.+.... +..+++|+.+.
T Consensus       292 aF~~c~~L~~l~l~~-n~i~~I~~~a-F~~~~~L~~ly  327 (329)
T 3sb4_A          292 AFMGCDNLRYVLATG-DKITTLGDEL-FGNGVPSKLIY  327 (329)
T ss_dssp             TTTTCTTEEEEEECS-SCCCEECTTT-TCTTCCCCEEE
T ss_pred             hhhCCccCCEEEeCC-CccCccchhh-hcCCcchhhhc
Confidence            466799999999876 4777777764 66788888875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.53  E-value=8.3e-07  Score=74.67  Aligned_cols=127  Identities=17%  Similarity=0.145  Sum_probs=65.6

Q ss_pred             ceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccc
Q 038945           52 ENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEH  131 (363)
Q Consensus        52 ~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  131 (363)
                      ++++++++. ++++|...      ..+|++|+++++ ++....+...++.+++|++|+++++. +..+..         .
T Consensus        11 ~~l~~s~~~-l~~ip~~~------~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~---------~   72 (192)
T 1w8a_A           11 TTVDCTGRG-LKEIPRDI------PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEP---------N   72 (192)
T ss_dssp             TEEECTTSC-CSSCCSCC------CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCT---------T
T ss_pred             CEEEcCCCC-cCcCccCC------CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCH---------h
Confidence            556666654 55544322      236777777766 45544443346667777777776653 333211         0


Q ss_pred             cCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcc
Q 038945          132 LCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQ  211 (363)
Q Consensus       132 ~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~  211 (363)
                      ....+++|+.|++++.. ++.+.                                   ...+..+++|+.|+++++..-.
T Consensus        73 ~~~~l~~L~~L~Ls~N~-l~~~~-----------------------------------~~~~~~l~~L~~L~L~~N~l~~  116 (192)
T 1w8a_A           73 AFEGASHIQELQLGENK-IKEIS-----------------------------------NKMFLGLHQLKTLNLYDNQISC  116 (192)
T ss_dssp             TTTTCTTCCEEECCSCC-CCEEC-----------------------------------SSSSTTCTTCCEEECCSSCCCE
T ss_pred             HcCCcccCCEEECCCCc-CCccC-----------------------------------HHHhcCCCCCCEEECCCCcCCe
Confidence            12245566666665432 22211                                   1123344666666666665333


Q ss_pred             cccccccCCCCCCEEeeccCc
Q 038945          212 KLVPASCYLENLATLEVSKCH  232 (363)
Q Consensus       212 ~l~~~~~~~~~L~~L~l~~c~  232 (363)
                      ..+..+..+++|++|++++++
T Consensus       117 ~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          117 VMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             ECTTSSTTCTTCCEEECTTCC
T ss_pred             eCHHHhhcCCCCCEEEeCCCC
Confidence            334455556666666666543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.52  E-value=2.4e-08  Score=82.43  Aligned_cols=90  Identities=12%  Similarity=0.189  Sum_probs=55.8

Q ss_pred             CCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccc----ccccceecccccccccccCC
Q 038945          222 NLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIV----FRKLEYLGLDCLPSLTSFCL  297 (363)
Q Consensus       222 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~----l~~L~~L~l~~c~~L~~~~~  297 (363)
                      +|++|++++|. +++..... +..+++|+.|++++|..+++.-.       ..+..    .++|++|++++|+++++...
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL-------~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCL-------ERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHHHH-------HHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             eEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHHHH-------HHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            56777777775 55544322 35677777777777776654311       11222    34677777777777766544


Q ss_pred             CCcccCCCCccEEeeccCCCcccc
Q 038945          298 GNYALEFPSLEHVVVRQCPTMKIF  321 (363)
Q Consensus       298 ~~~~~~~~~L~~L~l~~c~~l~~l  321 (363)
                      .. ...+++|++|++++|+.++..
T Consensus       133 ~~-L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          133 IA-LHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             HH-GGGCTTCCEEEEESCTTCCCH
T ss_pred             HH-HhcCCCCCEEECCCCCCCCch
Confidence            33 345788888888888877753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.51  E-value=6.6e-08  Score=79.79  Aligned_cols=91  Identities=16%  Similarity=0.257  Sum_probs=70.1

Q ss_pred             CCccEEEeccCcCcccc-cccccCCCCCCEEeeccCcCccccCchhhhh---hccccCeEeeccCcchhhhhccCccccc
Q 038945          197 ANLKSLEISECSQLQKL-VPASCYLENLATLEVSKCHGLINLLTLSTSE---SLVNLERMKMSDCKMMEEIIQSQVGEEA  272 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~---~l~~L~~L~l~~c~~l~~~~~~~~~~~~  272 (363)
                      ..|++|++++|. +++. ...+..+++|++|++++|..+++.....+..   ..++|+.|++++|..+++.       ..
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-------Gl  132 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-------GI  132 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-------HH
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-------HH
Confidence            479999999998 4433 3456789999999999999998865443332   1358999999999988764       12


Q ss_pred             cccccccccceeccccccccccc
Q 038945          273 EDCIVFRKLEYLGLDCLPSLTSF  295 (363)
Q Consensus       273 ~~~~~l~~L~~L~l~~c~~L~~~  295 (363)
                      ..+..+++|++|++++|+.+++.
T Consensus       133 ~~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          133 IALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             HHGGGCTTCCEEEEESCTTCCCH
T ss_pred             HHHhcCCCCCEEECCCCCCCCch
Confidence            23556899999999999988864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.47  E-value=7.6e-07  Score=75.04  Aligned_cols=108  Identities=16%  Similarity=0.157  Sum_probs=76.8

Q ss_pred             CCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCC
Q 038945           11 TPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNM   90 (363)
Q Consensus        11 ~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l   90 (363)
                      .++|+.|.++.              +.+..+|..+..+++|++|+++++. ++.++... +  ..+++|++|+++++ ++
T Consensus        30 ~~~l~~L~L~~--------------n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~-f--~~l~~L~~L~Ls~N-~l   90 (193)
T 2wfh_A           30 PRDVTELYLDG--------------NQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQS-F--SNMTQLLTLILSYN-RL   90 (193)
T ss_dssp             CTTCCEEECCS--------------SCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTT-T--TTCTTCCEEECCSS-CC
T ss_pred             CCCCCEEECCC--------------CcCchhHHHhhcccCCCEEECCCCc-CCEeCHhH-c--cCCCCCCEEECCCC-cc
Confidence            46788888871              2334566677788999999999987 77755432 1  47899999999987 56


Q ss_pred             cccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeeccccc
Q 038945           91 SSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP  148 (363)
Q Consensus        91 ~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  148 (363)
                      ....+. .+..+++|+.|+++++. +..++..         ....+++|+.|++++.+
T Consensus        91 ~~i~~~-~f~~l~~L~~L~L~~N~-l~~~~~~---------~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           91 RCIPPR-TFDGLKSLRLLSLHGND-ISVVPEG---------AFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CBCCTT-TTTTCTTCCEEECCSSC-CCBCCTT---------TTTTCTTCCEEECCSSC
T ss_pred             CEeCHH-HhCCCCCCCEEECCCCC-CCeeChh---------hhhcCccccEEEeCCCC
Confidence            664444 38889999999998864 5554421         12357888999988764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.43  E-value=2.2e-06  Score=70.85  Aligned_cols=125  Identities=16%  Similarity=0.159  Sum_probs=89.3

Q ss_pred             ccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccc
Q 038945          199 LKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVF  278 (363)
Q Consensus       199 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l  278 (363)
                      .+.+++++.. +..+|..  .+++|+.|+++++ .++.++. ..+..+++|++|+++++. +..+.       ...+..+
T Consensus         9 ~~~l~~~~~~-l~~~p~~--~~~~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~-------~~~~~~l   75 (177)
T 2o6r_A            9 GTEIRCNSKG-LTSVPTG--IPSSATRLELESN-KLQSLPH-GVFDKLTQLTKLSLSQNQ-IQSLP-------DGVFDKL   75 (177)
T ss_dssp             TTEEECCSSC-CSSCCTT--CCTTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSC-CCCCC-------TTTTTTC
T ss_pred             CCEEEecCCC-CccCCCC--CCCCCcEEEeCCC-cccEeCH-HHhcCcccccEEECCCCc-ceEeC-------hhHccCC
Confidence            4566666553 5555543  3578999999886 4666553 235678999999999874 33321       1224568


Q ss_pred             cccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCC-cCCCCcceeecccC
Q 038945          279 RKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE  339 (363)
Q Consensus       279 ~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~i~~~  339 (363)
                      ++|++|+++++ .++.++... +..+++|++|+++++ .++.++.+. ..+++|+.|++++|
T Consensus        76 ~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           76 TKLTILYLHEN-KLQSLPNGV-FDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             TTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CccCEEECCCC-CccccCHHH-hhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCC
Confidence            89999999986 566666542 456889999999776 777888765 57999999999999

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.37  E-value=6.6e-07  Score=90.83  Aligned_cols=110  Identities=13%  Similarity=0.030  Sum_probs=67.6

Q ss_pred             cccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceeccccccccc
Q 038945          214 VPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLT  293 (363)
Q Consensus       214 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~  293 (363)
                      +..+..+++|+.|+++++. +..++..  +..+++|+.|+++++. +..++        ..+..+++|++|+|+++ .++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~-l~~l~~~--~~~l~~L~~L~Ls~N~-l~~lp--------~~~~~l~~L~~L~Ls~N-~l~  283 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQ-IFNISAN--IFKYDFLTRLYLNGNS-LTELP--------AEIKNLSNLRVLDLSHN-RLT  283 (727)
T ss_dssp             -----CCCCCCEEECTTSC-CSCCCGG--GGGCCSCSCCBCTTSC-CSCCC--------GGGGGGTTCCEEECTTS-CCS
T ss_pred             hhhhccCCCCcEEECCCCC-CCCCChh--hcCCCCCCEEEeeCCc-CcccC--------hhhhCCCCCCEEeCcCC-cCC
Confidence            3445566777777777653 4455432  3467777777777764 22222        12456777777777775 455


Q ss_pred             ccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          294 SFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       294 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      .++..  +..+++|++|++++| .++.+|.++..+++|+.|++++|
T Consensus       284 ~lp~~--~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          284 SLPAE--LGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             SCCSS--GGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTS
T ss_pred             ccChh--hcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCC
Confidence            66554  666777777777665 56677777777777777777777

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.37  E-value=4.2e-06  Score=69.12  Aligned_cols=54  Identities=17%  Similarity=0.211  Sum_probs=29.6

Q ss_pred             cceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccC
Q 038945           51 IENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNC  113 (363)
Q Consensus        51 L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~  113 (363)
                      .+.++++++. ++.+|..      ..++|++|+++++ ++.. .+...++.+++|++|+++++
T Consensus         9 ~~~l~~~~~~-l~~~p~~------~~~~l~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n   62 (177)
T 2o6r_A            9 GTEIRCNSKG-LTSVPTG------IPSSATRLELESN-KLQS-LPHGVFDKLTQLTKLSLSQN   62 (177)
T ss_dssp             TTEEECCSSC-CSSCCTT------CCTTCSEEECCSS-CCCC-CCTTTTTTCTTCSEEECCSS
T ss_pred             CCEEEecCCC-CccCCCC------CCCCCcEEEeCCC-cccE-eCHHHhcCcccccEEECCCC
Confidence            3455555554 5553322      2356777777665 3443 33333566667777777654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.37  E-value=1.5e-08  Score=85.81  Aligned_cols=57  Identities=18%  Similarity=0.213  Sum_probs=32.4

Q ss_pred             CCCccEEEeccCcCccccc--ccccCCCCCCEEeeccCcCccccCc--------hhhhhhccccCeEe
Q 038945          196 FANLKSLEISECSQLQKLV--PASCYLENLATLEVSKCHGLINLLT--------LSTSESLVNLERMK  253 (363)
Q Consensus       196 l~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~~~--------~~~~~~l~~L~~L~  253 (363)
                      +++|+.|+++++. +..++  ..+..+++|++|++++++--...+.        ...+..+++|+.|+
T Consensus       114 l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          114 LVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            3566677776654 23222  2445677778888877643222111        12356788888887

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.36  E-value=3.3e-05  Score=72.65  Aligned_cols=216  Identities=13%  Similarity=0.155  Sum_probs=138.0

Q ss_pred             ccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccc
Q 038945           50 DIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADK  129 (363)
Q Consensus        50 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  129 (363)
                      .|+++.+.+  +++.+....   ...|.+|+.+++.++ ++.. ++...+. +.+|+.+.+..  .+..+...       
T Consensus       158 ~L~~i~lp~--~l~~I~~~a---F~~c~~L~~l~l~~n-~l~~-I~~~aF~-~~~L~~l~lp~--~l~~I~~~-------  220 (401)
T 4fdw_A          158 TVQEIVFPS--TLEQLKEDI---FYYCYNLKKADLSKT-KITK-LPASTFV-YAGIEEVLLPV--TLKEIGSQ-------  220 (401)
T ss_dssp             CCCEEECCT--TCCEECSST---TTTCTTCCEEECTTS-CCSE-ECTTTTT-TCCCSEEECCT--TCCEECTT-------
T ss_pred             CceEEEeCC--CccEehHHH---hhCcccCCeeecCCC-cceE-echhhEe-ecccCEEEeCC--chheehhh-------
Confidence            588998886  466655433   247899999999875 4554 4445466 58999999974  35555421       


Q ss_pred             cccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcC
Q 038945          130 EHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQ  209 (363)
Q Consensus       130 ~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~  209 (363)
                        ...++++|+.+.+.+  +++.+...                                   ++.+ .+|+.+.+.+  .
T Consensus       221 --aF~~~~~L~~l~l~~--~l~~I~~~-----------------------------------aF~~-~~L~~i~lp~--~  258 (401)
T 4fdw_A          221 --AFLKTSQLKTIEIPE--NVSTIGQE-----------------------------------AFRE-SGITTVKLPN--G  258 (401)
T ss_dssp             --TTTTCTTCCCEECCT--TCCEECTT-----------------------------------TTTT-CCCSEEEEET--T
T ss_pred             --HhhCCCCCCEEecCC--CccCcccc-----------------------------------cccc-CCccEEEeCC--C
Confidence              134677888888864  34433211                                   1223 5788888854  3


Q ss_pred             ccccc-ccccCCCCCCEEeeccCcC----ccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccccccccee
Q 038945          210 LQKLV-PASCYLENLATLEVSKCHG----LINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYL  284 (363)
Q Consensus       210 l~~l~-~~~~~~~~L~~L~l~~c~~----l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L  284 (363)
                      +..++ ..+..|++|+.+.+.+...    ...++. ..+..+++|+.+.+.+  .++.+       ...++..+++|+.+
T Consensus       259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~-~aF~~c~~L~~l~l~~--~i~~I-------~~~aF~~c~~L~~l  328 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP-YCLEGCPKLARFEIPE--SIRIL-------GQGLLGGNRKVTQL  328 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT-TTTTTCTTCCEECCCT--TCCEE-------CTTTTTTCCSCCEE
T ss_pred             ccEEChhHhhCCCCCCEEEeCCccccCCcccEECH-HHhhCCccCCeEEeCC--ceEEE-------hhhhhcCCCCccEE
Confidence            44453 3456788999999876421    112333 3366888999998874  24433       12235568899999


Q ss_pred             cccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCc-CCC-CcceeecccC
Q 038945          285 GLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV-DAP-KLNKVKPTEE  339 (363)
Q Consensus       285 ~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~-~L~~L~i~~~  339 (363)
                      .+..  +++.+.... +..| +|+.+.+.+. .+..++.+.. .++ ++..|.+..+
T Consensus       329 ~lp~--~l~~I~~~a-F~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          329 TIPA--NVTQINFSA-FNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             EECT--TCCEECTTS-SSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             EECc--cccEEcHHh-CCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHH
Confidence            9854  477776664 6667 9999999766 4444544333 554 7888888766

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.32  E-value=9.5e-07  Score=87.05  Aligned_cols=95  Identities=17%  Similarity=0.131  Sum_probs=64.4

Q ss_pred             hhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcce
Q 038945           39 QKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEE  118 (363)
Q Consensus        39 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~  118 (363)
                      ..+|. +..+++|++|+++++. ++.+|...    +.+++|+.|+++++ +++. +| . ++.+++|+.|+++++. +..
T Consensus       454 ~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~----~~l~~L~~L~Ls~N-~l~~-lp-~-l~~l~~L~~L~Ls~N~-l~~  522 (567)
T 1dce_A          454 TVLCH-LEQLLLVTHLDLSHNR-LRALPPAL----AALRCLEVLQASDN-ALEN-VD-G-VANLPRLQELLLCNNR-LQQ  522 (567)
T ss_dssp             SSCCC-GGGGTTCCEEECCSSC-CCCCCGGG----GGCTTCCEEECCSS-CCCC-CG-G-GTTCSSCCEEECCSSC-CCS
T ss_pred             CCCcC-ccccccCcEeecCccc-ccccchhh----hcCCCCCEEECCCC-CCCC-Cc-c-cCCCCCCcEEECCCCC-CCC
Confidence            34554 6677888888888886 77777655    57888888888887 5665 45 3 7888888888888764 444


Q ss_pred             ecccccccccccccCCCCCccceeecccccccccc
Q 038945          119 VLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRF  153 (363)
Q Consensus       119 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l  153 (363)
                      +...        .....+++|+.|++++++ +..+
T Consensus       523 ~~~p--------~~l~~l~~L~~L~L~~N~-l~~~  548 (567)
T 1dce_A          523 SAAI--------QPLVSCPRLVLLNLQGNS-LCQE  548 (567)
T ss_dssp             SSTT--------GGGGGCTTCCEEECTTSG-GGGS
T ss_pred             CCCc--------HHHhcCCCCCEEEecCCc-CCCC
Confidence            4100        012357788888888764 4443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.26  E-value=3.4e-08  Score=83.66  Aligned_cols=127  Identities=17%  Similarity=0.181  Sum_probs=93.0

Q ss_pred             ccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccc
Q 038945          192 SNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEE  271 (363)
Q Consensus       192 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  271 (363)
                      .+..+++|+.|+++++. +..++ .+..+++|+.|+++++ .++.++.  ....+++|+.|++++|. +..+.       
T Consensus        43 ~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~--~~~~~~~L~~L~L~~N~-l~~l~-------  109 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKIEN--LDAVADTLEELWISYNQ-IASLS-------  109 (198)
T ss_dssp             HHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE-EECSCSS--HHHHHHHCSEEEEEEEE-CCCHH-------
T ss_pred             HHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCC-Ccccccc--hhhcCCcCCEEECcCCc-CCcCC-------
Confidence            45567999999999885 55565 7778899999999987 5666664  36678999999999974 44332       


Q ss_pred             ccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccc-cCC----------CcCCCCcceee
Q 038945          272 AEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIF-SQG----------VVDAPKLNKVK  335 (363)
Q Consensus       272 ~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~----------~~~~~~L~~L~  335 (363)
                        .+..+++|+.|+++++ .++.++.......+++|++|++++|+ +... |..          +..+++|+.|+
T Consensus       110 --~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          110 --GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             --HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             --ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence              2456899999999986 45554431125678999999998874 4333 222          56899999987

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.19  E-value=1.8e-06  Score=87.55  Aligned_cols=108  Identities=17%  Similarity=0.135  Sum_probs=69.9

Q ss_pred             cccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCC
Q 038945            8 ILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDC   87 (363)
Q Consensus         8 ~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c   87 (363)
                      +..+++|+.|+++              ...+..+|..+..+++|++|+|+++. ++.+|...    ..+++|++|++++|
T Consensus       220 ~~~l~~L~~L~Ls--------------~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~----~~l~~L~~L~Ls~N  280 (727)
T 4b8c_D          220 KYDDQLWHALDLS--------------NLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEI----KNLSNLRVLDLSHN  280 (727)
T ss_dssp             --CCCCCCEEECT--------------TSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGG----GGGTTCCEEECTTS
T ss_pred             hccCCCCcEEECC--------------CCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhh----hCCCCCCEEeCcCC
Confidence            4455666666666              12233456566677888888888876 77766555    57788888888877


Q ss_pred             CCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeeccccc
Q 038945           88 KNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP  148 (363)
Q Consensus        88 ~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  148 (363)
                       ++.. +|.. ++.+++|++|++++| .+..++..          ...+++|+.|+|+++.
T Consensus       281 -~l~~-lp~~-~~~l~~L~~L~L~~N-~l~~lp~~----------~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          281 -RLTS-LPAE-LGSCFQLKYFYFFDN-MVTTLPWE----------FGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             -CCSS-CCSS-GGGGTTCSEEECCSS-CCCCCCSS----------TTSCTTCCCEECTTSC
T ss_pred             -cCCc-cChh-hcCCCCCCEEECCCC-CCCccChh----------hhcCCCccEEeCCCCc
Confidence             4553 4555 677888888888776 35554421          2357788888887663

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.11  E-value=3.6e-06  Score=78.09  Aligned_cols=180  Identities=21%  Similarity=0.193  Sum_probs=100.7

Q ss_pred             hhhhhhhccccccccceEecccCcCcc---cccccC-cC--CCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEE
Q 038945           37 TIQKCYIEMIGFRDIENIKLSLFPRLK---EIWHNQ-AL--PVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEV  110 (363)
Q Consensus        37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~---~~~~~~-~l--~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l  110 (363)
                      .+..+...+..+++|+.|.+.+.. ..   -.|... .+  ....+|+|++|+++++.++.  .+.  +. +++|++|++
T Consensus       127 ~~~~L~~s~~~l~~L~~L~l~~~~-~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~--l~~--~~-~~~L~~L~L  200 (362)
T 2ra8_A          127 IADGIVENKEKFAHFEGLFWGDID-FEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS--IGK--KP-RPNLKSLEI  200 (362)
T ss_dssp             HHHHHHTTHHHHTTCSEEEECCCC-TTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB--CCS--CB-CTTCSEEEE
T ss_pred             HHHHHHHhhhhcchhhheeecCcc-hhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce--ecc--cc-CCCCcEEEE
Confidence            345566666678899999886542 11   111110 01  01357999999999875443  232  33 789999999


Q ss_pred             ccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcc
Q 038945          111 RNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENA  190 (363)
Q Consensus       111 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~  190 (363)
                      ..|. +..-. .....      ...+|+|+.|.|....+...   .. ..+..+.                  .     .
T Consensus       201 ~~~~-l~~~~-l~~l~------~~~lp~L~~L~L~~~~~~~~---~~-~~~~~l~------------------~-----~  245 (362)
T 2ra8_A          201 ISGG-LPDSV-VEDIL------GSDLPNLEKLVLYVGVEDYG---FD-GDMNVFR------------------P-----L  245 (362)
T ss_dssp             ECSB-CCHHH-HHHHH------HSBCTTCCEEEEECBCGGGT---CC-SCGGGTG------------------G-----G
T ss_pred             ecCC-CChHH-HHHHH------HccCCCCcEEEEeccccccc---cc-hhHHHHH------------------H-----H
Confidence            8664 32211 01000      12588999998853211100   00 0000000                  0     0


Q ss_pred             cccccCCCccEEEeccCcCcccccc---cccCCCCCCEEeeccCcCccccCchhh---hhhccccCeEeeccCc
Q 038945          191 ESNKVFANLKSLEISECSQLQKLVP---ASCYLENLATLEVSKCHGLINLLTLST---SESLVNLERMKMSDCK  258 (363)
Q Consensus       191 ~~l~~l~~L~~L~l~~c~~l~~l~~---~~~~~~~L~~L~l~~c~~l~~~~~~~~---~~~l~~L~~L~l~~c~  258 (363)
                      .....+++|+.|++.+|........   ....+++|++|+++.+ .+++.....+   +..+++|+.|++++|.
T Consensus       246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            0113468999999998875432211   1235889999999764 5665322111   3568999999999885

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.09  E-value=1.4e-05  Score=74.07  Aligned_cols=84  Identities=12%  Similarity=0.091  Sum_probs=44.5

Q ss_pred             hccccCeEeeccCcchhhhhccCccccccccccccccceeccccccccccc-----CCCCcccCCCCccEEeeccCCCcc
Q 038945          245 SLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSF-----CLGNYALEFPSLEHVVVRQCPTMK  319 (363)
Q Consensus       245 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~-----~~~~~~~~~~~L~~L~l~~c~~l~  319 (363)
                      .+|+|+.|.+.+|.........     ......+|+|++|+++.+ .+.+.     ..+  ...+++|++|++++| .+.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~-----la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~--L~~l~~L~~L~L~~n-~i~  320 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEM-----FLESDILPQLETMDISAG-VLTDEGARLLLDH--VDKIKHLKFINMKYN-YLS  320 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHH-----HHHCSSGGGCSEEECCSS-CCBHHHHHHHHTT--HHHHTTCSEEECCSB-BCC
T ss_pred             CCCCcCEEeCCCCCCchHHHHH-----HHhCccCCCCCEEECCCC-CCChHHHHHHHhh--cccCCcceEEECCCC-cCC
Confidence            4677888888776543221110     000124678888888654 45442     221  245678888888766 344


Q ss_pred             cccCCCcCCCC--cceeecccC
Q 038945          320 IFSQGVVDAPK--LNKVKPTEE  339 (363)
Q Consensus       320 ~l~~~~~~~~~--L~~L~i~~~  339 (363)
                      ..  +...+..  ..+++++++
T Consensus       321 d~--~~~~l~~alg~~~~~~~~  340 (362)
T 2ra8_A          321 DE--MKKELQKSLPMKIDVSDS  340 (362)
T ss_dssp             HH--HHHHHHHHCCSEEECCSB
T ss_pred             HH--HHHHHHHHcCCEEEecCC
Confidence            22  1111211  355777777

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.03  E-value=9.8e-06  Score=74.48  Aligned_cols=59  Identities=14%  Similarity=0.072  Sum_probs=28.2

Q ss_pred             ccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          278 FRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       278 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      +++|+.|+|+++ .++.++... +..+++|++|+++++ +++.+|.+.....+|+.|++.+|
T Consensus        55 l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           55 LGELRNLTIVKS-GLRFVAPDA-FHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGN  113 (347)
T ss_dssp             CCCCSEEECCSS-CCCEECTTG-GGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEECCSS
T ss_pred             ccCCCEEECCCC-ccceeCHHH-hcCCcCCCEEeCCCC-ccceeCHHHcccCCceEEEeeCC
Confidence            444444444443 344333321 344555555555433 45555544443333666666666

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.03  E-value=1.2e-05  Score=66.43  Aligned_cols=93  Identities=15%  Similarity=0.237  Sum_probs=68.3

Q ss_pred             hhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcc
Q 038945           38 IQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLE  117 (363)
Q Consensus        38 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~  117 (363)
                      +..+|..+.  ++|++|+++++. ++.++...   ...+++|++|+++++ ++.. .|...+..+++|++|+++++ .+.
T Consensus        24 l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~---~~~l~~L~~L~Ls~N-~l~~-i~~~~~~~l~~L~~L~L~~N-~l~   94 (174)
T 2r9u_A           24 LASVPAGIP--TDKQRLWLNNNQ-ITKLEPGV---FDHLVNLQQLYFNSN-KLTA-IPTGVFDKLTQLTQLDLNDN-HLK   94 (174)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSS-CCC
T ss_pred             CCccCCCcC--CCCcEEEeCCCC-ccccCHHH---hcCCcCCCEEECCCC-CCCc-cChhHhCCcchhhEEECCCC-ccc
Confidence            445665553  789999999987 87764332   157999999999998 6776 55555788999999999986 465


Q ss_pred             eecccccccccccccCCCCCccceeeccccc
Q 038945          118 EVLHLEELNADKEHLCPLFPKLFSLRLIDLP  148 (363)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  148 (363)
                      .++..         ....+++|+.|++++.+
T Consensus        95 ~l~~~---------~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           95 SIPRG---------AFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             CCCTT---------TTTTCTTCSEEECCSSC
T ss_pred             eeCHH---------HhccccCCCEEEeCCCC
Confidence            55421         13468899999998875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.02  E-value=4.6e-07  Score=84.53  Aligned_cols=36  Identities=17%  Similarity=0.237  Sum_probs=17.9

Q ss_pred             CCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccC
Q 038945           77 NNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNC  113 (363)
Q Consensus        77 ~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~  113 (363)
                      .+|++|++++| .+.+.....+...+++|++|++++|
T Consensus       101 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n  136 (372)
T 3un9_A          101 HALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN  136 (372)
T ss_dssp             SCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred             CCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC
Confidence            45666666655 3333223333344455666666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.01  E-value=0.00023  Score=66.57  Aligned_cols=82  Identities=15%  Similarity=0.127  Sum_probs=49.1

Q ss_pred             hhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccC
Q 038945          244 ESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ  323 (363)
Q Consensus       244 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~  323 (363)
                      ..+.+|+.+.+.+.  ++.+       ...++..+++|+.+++.+  +++.+.... +..|.+|+.+.+..  .++.++.
T Consensus       294 ~~~~~L~~i~l~~~--i~~I-------~~~aF~~c~~L~~i~lp~--~v~~I~~~a-F~~c~~L~~i~lp~--~l~~I~~  359 (394)
T 4fs7_A          294 YGCSSLTEVKLLDS--VKFI-------GEEAFESCTSLVSIDLPY--LVEEIGKRS-FRGCTSLSNINFPL--SLRKIGA  359 (394)
T ss_dssp             TTCTTCCEEEECTT--CCEE-------CTTTTTTCTTCCEECCCT--TCCEECTTT-TTTCTTCCEECCCT--TCCEECT
T ss_pred             cccccccccccccc--ccee-------chhhhcCCCCCCEEEeCC--cccEEhHHh-ccCCCCCCEEEECc--cccEehH
Confidence            34566666665432  2222       112245577788887753  466665553 56678888887743  3666655


Q ss_pred             CCc-CCCCcceeecccC
Q 038945          324 GVV-DAPKLNKVKPTEE  339 (363)
Q Consensus       324 ~~~-~~~~L~~L~i~~~  339 (363)
                      ... .+++|+++++..+
T Consensus       360 ~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          360 NAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTBTTCTTCCEEEEEGG
T ss_pred             HHhhCCCCCCEEEECCC
Confidence            444 7788888887655

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.98  E-value=1.7e-05  Score=65.20  Aligned_cols=94  Identities=15%  Similarity=0.209  Sum_probs=68.4

Q ss_pred             hhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCc
Q 038945           37 TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSL  116 (363)
Q Consensus        37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l  116 (363)
                      .+..+|..+  .+.|++|+++++. ++.++... +  ..+++|++|+++++ ++.. .|...+..+++|++|+++++ .+
T Consensus        20 ~l~~ip~~~--~~~l~~L~L~~N~-i~~~~~~~-~--~~l~~L~~L~Ls~N-~l~~-l~~~~f~~l~~L~~L~L~~N-~l   90 (170)
T 3g39_A           20 SLASVPTGI--PTTTQVLYLYDNQ-ITKLEPGV-F--DRLTQLTRLDLDNN-QLTV-LPAGVFDKLTQLTQLSLNDN-QL   90 (170)
T ss_dssp             CCSSCCSCC--CTTCSEEECCSSC-CCCCCTTT-T--TTCTTCSEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSS-CC
T ss_pred             CcCccCccC--CCCCcEEEcCCCc-CCccChhh-h--cCcccCCEEECCCC-CcCc-cChhhccCCCCCCEEECCCC-cc
Confidence            344566555  3789999999987 88764332 1  57899999999998 5665 45555788999999999986 46


Q ss_pred             ceecccccccccccccCCCCCccceeeccccc
Q 038945          117 EEVLHLEELNADKEHLCPLFPKLFSLRLIDLP  148 (363)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  148 (363)
                      ..++..         ....+++|+.|++++.+
T Consensus        91 ~~~~~~---------~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           91 KSIPRG---------AFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CCCCTT---------TTTTCTTCCEEECCSSC
T ss_pred             CEeCHH---------HhcCCCCCCEEEeCCCC
Confidence            555421         13468899999998764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.97  E-value=4e-05  Score=63.17  Aligned_cols=60  Identities=15%  Similarity=0.169  Sum_probs=31.4

Q ss_pred             cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC-CcCCCCcceeecccC
Q 038945          277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEE  339 (363)
Q Consensus       277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~i~~~  339 (363)
                      .+++|++|+++++ .++.++.+. +..+++|++|+++++ +++.++.+ +..+++|+.|++++|
T Consensus        55 ~l~~L~~L~Ls~N-~l~~i~~~~-~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           55 HLVNLQQLYFNSN-KLTAIPTGV-FDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             CCcCCCEEECCCC-CCCccChhH-hCCcchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCC
Confidence            3445555555543 344444331 234566666666443 55555544 445666666666666

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.91  E-value=6e-05  Score=61.84  Aligned_cols=60  Identities=18%  Similarity=0.212  Sum_probs=34.1

Q ss_pred             cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC-CcCCCCcceeecccC
Q 038945          277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEE  339 (363)
Q Consensus       277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~i~~~  339 (363)
                      .+++|++|+++++ .++.++.+. +..+++|++|+++++ +++.++.+ +..+++|+.|++++|
T Consensus        52 ~l~~L~~L~Ls~N-~l~~l~~~~-f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           52 RLTQLTRLDLDNN-QLTVLPAGV-FDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             TCTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcccCCEEECCCC-CcCccChhh-ccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCC
Confidence            4555555555553 344444431 345666666766544 55555554 446677777777776

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.68  E-value=9.6e-05  Score=67.75  Aligned_cols=63  Identities=25%  Similarity=0.145  Sum_probs=29.6

Q ss_pred             cccCCCccEEEeccCcCccccc-ccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccC
Q 038945          193 NKVFANLKSLEISECSQLQKLV-PASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDC  257 (363)
Q Consensus       193 l~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  257 (363)
                      +..+++|+.|+++++..+..++ ..+..+++|+.|+++++ .++.++.. .+..+++|+.|+++++
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSS
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHH-HhcCCcCCCEEeCCCC
Confidence            4444555555555433344333 23445555555555553 34443321 2344555555555553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.55  E-value=0.00062  Score=63.58  Aligned_cols=60  Identities=10%  Similarity=-0.046  Sum_probs=43.2

Q ss_pred             cccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCc-CCCCcceeecccC
Q 038945          275 CIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV-DAPKLNKVKPTEE  339 (363)
Q Consensus       275 ~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~i~~~  339 (363)
                      +..+++|+.+.+.+  +++.+.... +..|.+|+.+.+.+  .++.++.... .+++|+.+++..+
T Consensus       293 F~~~~~L~~i~l~~--~i~~I~~~a-F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          293 FYGCSSLTEVKLLD--SVKFIGEEA-FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TTTCTTCCEEEECT--TCCEECTTT-TTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT
T ss_pred             cccccccccccccc--ccceechhh-hcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc
Confidence            34567788887753  466666654 66789999999853  4777765444 8899999998765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.38  E-value=0.0044  Score=57.76  Aligned_cols=106  Identities=11%  Similarity=0.144  Sum_probs=63.7

Q ss_pred             ccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccC
Q 038945          217 SCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFC  296 (363)
Q Consensus       217 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~  296 (363)
                      +..+.+|+.+.+..  .+..+.. ..+..+++|+.+.+..  .++.+       ...++..+++|+.+.+..  +++.+.
T Consensus       261 F~~c~~L~~i~lp~--~~~~I~~-~aF~~c~~L~~i~l~~--~i~~I-------~~~aF~~c~~L~~i~lp~--~v~~I~  326 (394)
T 4gt6_A          261 FDSCAYLASVKMPD--SVVSIGT-GAFMNCPALQDIEFSS--RITEL-------PESVFAGCISLKSIDIPE--GITQIL  326 (394)
T ss_dssp             TTTCSSCCEEECCT--TCCEECT-TTTTTCTTCCEEECCT--TCCEE-------CTTTTTTCTTCCEEECCT--TCCEEC
T ss_pred             eeecccccEEeccc--ccceecC-cccccccccccccCCC--ccccc-------CceeecCCCCcCEEEeCC--cccEeh
Confidence            34567777777743  2333332 2245667777777643  22222       112345677888888763  466665


Q ss_pred             CCCcccCCCCccEEeeccCCCcccccCCCc-CCCCcceeecccC
Q 038945          297 LGNYALEFPSLEHVVVRQCPTMKIFSQGVV-DAPKLNKVKPTEE  339 (363)
Q Consensus       297 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~i~~~  339 (363)
                      ... +..|.+|+++.+..  .++.++.... ++++|+.+++.++
T Consensus       327 ~~a-F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          327 DDA-FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTT-TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred             HhH-hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence            554 56678888888842  3666655433 7888888888776

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.36  E-value=2.4e-05  Score=72.79  Aligned_cols=136  Identities=10%  Similarity=-0.011  Sum_probs=75.1

Q ss_pred             CCccEEEeccCcCccccc-ccccCCCCCCEEeeccCcCccccCchhhh----hhccccCeEeeccCcchhhhhccCcccc
Q 038945          197 ANLKSLEISECSQLQKLV-PASCYLENLATLEVSKCHGLINLLTLSTS----ESLVNLERMKMSDCKMMEEIIQSQVGEE  271 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~----~~l~~L~~L~l~~c~~l~~~~~~~~~~~  271 (363)
                      ++|++|++++|..-.... .....+++|++|++++| .++......+.    ...++|+.|++++|. +.+....   .-
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~---~l  175 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVA---VL  175 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHH---HH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHH---HH
Confidence            577788887775322111 11223557788888776 34433222211    134678888888875 3221000   00


Q ss_pred             ccccccccccceecccccccccccCCC---CcccCCCCccEEeeccCCCccc-----ccCCCcCCCCcceeecccC
Q 038945          272 AEDCIVFRKLEYLGLDCLPSLTSFCLG---NYALEFPSLEHVVVRQCPTMKI-----FSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       272 ~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~~~~~L~~L~l~~c~~l~~-----l~~~~~~~~~L~~L~i~~~  339 (363)
                      ...+...++|++|++++|. +.+....   ......++|++|++++| .++.     ++..+...++|++|++++|
T Consensus       176 ~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          176 MEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             HHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             HHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence            1112346788888888863 4432110   01344678899998777 4543     2233446688999999888

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.10  E-value=0.046  Score=50.31  Aligned_cols=106  Identities=9%  Similarity=0.142  Sum_probs=55.1

Q ss_pred             cCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCC
Q 038945          218 CYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCL  297 (363)
Q Consensus       218 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~  297 (363)
                      ..+..|+.+.+..  .++.+... .+..+.+|+.+.+...  ++.+       ....+..+++|+.+.+.+ ..++.+..
T Consensus       237 ~~~~~L~~i~lp~--~v~~I~~~-aF~~~~~l~~i~l~~~--i~~i-------~~~aF~~c~~L~~i~l~~-~~i~~I~~  303 (379)
T 4h09_A          237 YGMKALDEIAIPK--NVTSIGSF-LLQNCTALKTLNFYAK--VKTV-------PYLLCSGCSNLTKVVMDN-SAIETLEP  303 (379)
T ss_dssp             TTCSSCCEEEECT--TCCEECTT-TTTTCTTCCEEEECCC--CSEE-------CTTTTTTCTTCCEEEECC-TTCCEECT
T ss_pred             cCCccceEEEcCC--CccEeCcc-ccceeehhcccccccc--ceec-------cccccccccccccccccc-cccceehh
Confidence            3455666666643  24443322 2345566666665432  2221       111234566777776654 24555554


Q ss_pred             CCcccCCCCccEEeeccCCCcccccCCC-cCCCCcceeecccC
Q 038945          298 GNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE  339 (363)
Q Consensus       298 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~i~~~  339 (363)
                      .. +..|.+|+.+.+..  .++.++... .++++|+++.+..+
T Consensus       304 ~a-F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          304 RV-FMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TT-TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred             hh-hcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECCc
Confidence            43 55667777777632  355555433 36677777776544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.62  E-value=0.081  Score=49.02  Aligned_cols=128  Identities=13%  Similarity=0.158  Sum_probs=78.1

Q ss_pred             ccccCCCccEEEeccCcCccccc-ccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccc
Q 038945          192 SNKVFANLKSLEISECSQLQKLV-PASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGE  270 (363)
Q Consensus       192 ~l~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  270 (363)
                      ++.+...|+++.+.+.  +..+. ..+..+++|+.+.+..  .++.++.. .+..+.+|+.+++.+.  ++.+       
T Consensus       260 aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~-aF~~c~~L~~i~lp~~--v~~I-------  325 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPES-VFAGCISLKSIDIPEG--ITQI-------  325 (394)
T ss_dssp             TTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTT-TTTTCTTCCEEECCTT--CCEE-------
T ss_pred             eeeecccccEEecccc--cceecCcccccccccccccCCC--cccccCce-eecCCCCcCEEEeCCc--ccEe-------
Confidence            3455577788877543  22222 2345688999999863  56666543 3567899999998653  3333       


Q ss_pred             cccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          271 EAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       271 ~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      ...++..+.+|+.+.+..  +++.+.... +..|++|+.+.+.+....  . .....+.+|+.+.+..+
T Consensus       326 ~~~aF~~C~~L~~i~ip~--sv~~I~~~a-F~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          326 LDDAFAGCEQLERIAIPS--SVTKIPESA-FSNCTALNNIEYSGSRSQ--W-NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             CTTTTTTCTTCCEEEECT--TCCBCCGGG-GTTCTTCCEEEESSCHHH--H-HTCBCCCCC--------
T ss_pred             hHhHhhCCCCCCEEEECc--ccCEEhHhH-hhCCCCCCEEEECCceee--h-hhhhccCCCCEEEeCCC
Confidence            122356789999999863  577776654 677999999999764321  1 24457788888888766

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.39  E-value=0.0043  Score=54.61  Aligned_cols=91  Identities=18%  Similarity=0.116  Sum_probs=56.5

Q ss_pred             ccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcC--CCCEEEEccCCCcceecccc
Q 038945           46 IGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLN--NLASLEVRNCDSLEEVLHLE  123 (363)
Q Consensus        46 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~--~L~~L~l~~~~~l~~~~~~~  123 (363)
                      ..++.|++|+|+++. +..+.... -....+++|+.|+++++ ++.+...   +..+.  +|++|++++++--..++...
T Consensus       167 ~~l~~L~~L~Ls~N~-l~~l~~l~-~~~~~l~~L~~L~Ls~N-~i~~~~~---l~~l~~l~L~~L~L~~Npl~~~~~~~~  240 (267)
T 3rw6_A          167 ENIPELLSLNLSNNR-LYRLDDMS-SIVQKAPNLKILNLSGN-ELKSERE---LDKIKGLKLEELWLDGNSLCDTFRDQS  240 (267)
T ss_dssp             HHCTTCCEEECTTSC-CCCCGGGT-THHHHSTTCCEEECTTS-CCCSGGG---GGGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred             hhCCCCCEEECCCCC-CCCCccch-hHHhhCCCCCEEECCCC-ccCCchh---hhhcccCCcceEEccCCcCccccCcch
Confidence            357899999999987 76643211 00136899999999987 5665423   44455  89999999877433332111


Q ss_pred             cccccccccCCCCCccceeecc
Q 038945          124 ELNADKEHLCPLFPKLFSLRLI  145 (363)
Q Consensus       124 ~~~~~~~~~~~~l~~L~~L~l~  145 (363)
                      ..   ...+...+|+|+.|+=.
T Consensus       241 ~y---~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          241 TY---ISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             HH---HHHHHHHCTTCCEESSC
T ss_pred             hH---HHHHHHHCcccCeECCc
Confidence            00   01113368888888754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.08  E-value=0.67  Score=42.31  Aligned_cols=116  Identities=15%  Similarity=0.159  Sum_probs=70.0

Q ss_pred             cccCCCccEEEeccCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccc
Q 038945          193 NKVFANLKSLEISECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEE  271 (363)
Q Consensus       193 l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  271 (363)
                      ..+...|+.+.+.+.  ++.+.. .+..+.+|+.+.+..  .++.++.. .+..+++|+.+.+.+.. ++.+       .
T Consensus       236 f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~-aF~~c~~L~~i~l~~~~-i~~I-------~  302 (379)
T 4h09_A          236 FYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA--KVKTVPYL-LCSGCSNLTKVVMDNSA-IETL-------E  302 (379)
T ss_dssp             TTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC--CCSEECTT-TTTTCTTCCEEEECCTT-CCEE-------C
T ss_pred             ccCCccceEEEcCCC--ccEeCccccceeehhccccccc--cceecccc-ccccccccccccccccc-ccee-------h
Confidence            444567777777543  344422 345677888888854  45555432 35678889988886532 2222       1


Q ss_pred             ccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCc
Q 038945          272 AEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV  326 (363)
Q Consensus       272 ~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~  326 (363)
                      ..++..+++|+.+.+..  +++.+.... +..|.+|+.+.+..  .++.+.....
T Consensus       303 ~~aF~~c~~L~~i~lp~--~l~~I~~~a-F~~C~~L~~i~ip~--~v~~I~~~aF  352 (379)
T 4h09_A          303 PRVFMDCVKLSSVTLPT--ALKTIQVYA-FKNCKALSTISYPK--SITLIESGAF  352 (379)
T ss_dssp             TTTTTTCTTCCEEECCT--TCCEECTTT-TTTCTTCCCCCCCT--TCCEECTTTT
T ss_pred             hhhhcCCCCCCEEEcCc--cccEEHHHH-hhCCCCCCEEEECC--ccCEEchhHh
Confidence            12355678888888853  466666554 66788888887742  3555544433

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.06  E-value=0.0017  Score=53.80  Aligned_cols=65  Identities=5%  Similarity=0.016  Sum_probs=33.0

Q ss_pred             cccCCCccEEEeccCcCcc-----cccccccCCCCCCEEeeccCcCccccCch---hhhhhccccCeEeeccCc
Q 038945          193 NKVFANLKSLEISECSQLQ-----KLVPASCYLENLATLEVSKCHGLINLLTL---STSESLVNLERMKMSDCK  258 (363)
Q Consensus       193 l~~l~~L~~L~l~~c~~l~-----~l~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~c~  258 (363)
                      +...+.|++|++++|..+.     .+...+...++|++|++++|. +.+-...   ..+...++|+.|++++|.
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            3445677777777762232     122333445667777776653 3332111   112234566666666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.73  E-value=0.0051  Score=54.13  Aligned_cols=63  Identities=19%  Similarity=0.140  Sum_probs=44.8

Q ss_pred             CCCCccEEEecCCCCCcccCc-hhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeeccccc
Q 038945           75 FFNNLRHLVLDDCKNMSSAIP-ANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP  148 (363)
Q Consensus        75 ~l~~L~~L~l~~c~~l~~~~p-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  148 (363)
                      .+++|+.|+++++ ++.+..+ ...++.+++|+.|+++++ .+..+..+..        ...+ +|+.|.+++.+
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~--------l~~l-~L~~L~L~~Np  231 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDK--------IKGL-KLEELWLDGNS  231 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGG--------GTTS-CCSEEECTTST
T ss_pred             hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhh--------cccC-CcceEEccCCc
Confidence            6899999999998 5665332 234678999999999875 4655533322        1234 89999999877

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.23  E-value=0.0089  Score=49.39  Aligned_cols=124  Identities=13%  Similarity=0.117  Sum_probs=77.4

Q ss_pred             cccccCCCceeEEEeeecccceeeecc-CCCc-hhhhhhhccccccccceEecccCcCcccccccCcCC--CCCCCCccE
Q 038945            6 LGILSTPKLHKVQVTVKEEGELYHREG-NLNS-TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALP--VSFFNNLRH   81 (363)
Q Consensus         6 ~~~~~~~~L~~l~~~~~~~~~~~~~~~-~l~~-~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~--~~~l~~L~~   81 (363)
                      ......++|++|+++          +. .+.. ....+...+...++|++|+|+++. +.+..... +.  ....++|++
T Consensus        30 ~~l~~~~~L~~L~L~----------~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~-l~~~L~~n~~L~~   97 (185)
T 1io0_A           30 RIQNNDPDLEEVNLN----------NIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFA-LAEMLKVNNTLKS   97 (185)
T ss_dssp             HHHTTCTTCCEEECT----------TCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHH-HHHHHHHCSSCCE
T ss_pred             HHHhcCCCCCEEEec----------CCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHH-HHHHHHhCCCcCE
Confidence            345678999999998          22 3333 455566667778999999999997 76521111 10  024578999


Q ss_pred             EEecCCCCCcccCc---hhHHhhcCCCCEEEE--ccCCCcceecccccccccccccCCCCCccceeeccccc
Q 038945           82 LVLDDCKNMSSAIP---ANLIRCLNNLASLEV--RNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP  148 (363)
Q Consensus        82 L~l~~c~~l~~~~p---~~~l~~l~~L~~L~l--~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  148 (363)
                      |++++| .+.+...   ...+...++|++|++  +++ .+.......     ........++|+.|+++++.
T Consensus        98 L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~-----l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A           98 LNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEME-----IANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             EECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHH-----HHHHHHHCSSCCEEECCCSS
T ss_pred             EECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHH-----HHHHHHhCCCcCEEeccCCC
Confidence            999998 4553221   223667789999999  554 344321100     00012245789999998764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=91.17  E-value=0.36  Score=37.10  Aligned_cols=44  Identities=16%  Similarity=0.278  Sum_probs=32.1

Q ss_pred             CC-CccEEeeccCCCcccccCCCc-CCCCcceeecccCCCCCCccccCCcch
Q 038945          304 FP-SLEHVVVRQCPTMKIFSQGVV-DAPKLNKVKPTEEEDGDDEGCWEGNLN  353 (363)
Q Consensus       304 ~~-~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~i~~~~~~~~~~~~~~~~~  353 (363)
                      +| +|++|+++++ +++.++.+.. .+++|+.|++++|     ++..+.++.
T Consensus        29 lp~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-----P~~CdC~l~   74 (130)
T 3rfe_A           29 FPVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGAN-----PWRCDCRLV   74 (130)
T ss_dssp             CCTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSS-----CCBCSGGGH
T ss_pred             CCcCCCEEECCCC-cCCccChhhhhhccccCEEEecCC-----CeeccCccH
Confidence            44 6899999554 7888887665 7889999999999     544444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=86.56  E-value=1.2  Score=34.10  Aligned_cols=35  Identities=23%  Similarity=0.396  Sum_probs=22.0

Q ss_pred             CCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccC
Q 038945           77 NNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNC  113 (363)
Q Consensus        77 ~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~  113 (363)
                      ++|++|+++++ +++. ++.+.+..+++|+.|++.++
T Consensus        31 ~~l~~L~Ls~N-~l~~-l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           31 VDTTELVLTGN-NLTA-LPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             TTCSEEECTTS-CCSS-CCTTTGGGCTTCCEEECCSS
T ss_pred             cCCCEEECCCC-cCCc-cChhhhhhccccCEEEecCC
Confidence            35777777765 4443 44455666777777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	363
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.57
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.57
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.49
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.47
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.44
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.43
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.41
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.37
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.36
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.3
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.28
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.24
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.23
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.21
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.2
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.18
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.17
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.16
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.03
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.69
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.66
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.51
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.46
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.42
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.32
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.22
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.08
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.07
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.36
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.89
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.62
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.21
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	93.73
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.65
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.51

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.3e-15  Score=135.49  Aligned_cols=111  Identities=19%  Similarity=0.176  Sum_probs=51.6

Q ss_pred             CCccEEEeccCcCccccc--c-cccCCCCCCEEeeccCc-CccccCchhhhhhccccCeEeeccCcchhhhhccCccccc
Q 038945          197 ANLKSLEISECSQLQKLV--P-ASCYLENLATLEVSKCH-GLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEA  272 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l~--~-~~~~~~~L~~L~l~~c~-~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  272 (363)
                      ++|++|++++|..+.+-.  . ....+++|+.|++++|. .+++.....+...+|+|+.|++++|..+++.       ..
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~-------~~  193 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND-------CF  193 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG-------GG
T ss_pred             HhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCch-------hh
Confidence            555555555554443211  1 11123556666665542 2333222233445556666666655544321       11


Q ss_pred             cccccccccceecccccccccccCCCCcccCCCCccEEeeccC
Q 038945          273 EDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC  315 (363)
Q Consensus       273 ~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c  315 (363)
                      ..+..+++|++|++++|..+++..... ...+|+|++|++.+|
T Consensus       194 ~~l~~~~~L~~L~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~  235 (284)
T d2astb2         194 QEFFQLNYLQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred             hhhcccCcCCEEECCCCCCCChHHHHH-HhcCCCCCEEeeeCC
Confidence            123345556666666655554433222 334556666666555

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.57  E-value=2e-14  Score=129.21  Aligned_cols=124  Identities=15%  Similarity=0.077  Sum_probs=71.7

Q ss_pred             cEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccccc
Q 038945          200 KSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFR  279 (363)
Q Consensus       200 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~  279 (363)
                      +.+.++++......+..+..+ ....+++..+......+  .....+++++.+++.++.....+         ..+..++
T Consensus       177 ~~l~~~~n~l~~~~~~~~~~l-~~~~l~l~~~~~~~~~~--~~~~~~~~l~~l~~~~~~l~~~~---------~~~~~~~  244 (313)
T d1ogqa_         177 TSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDAS--VLFGSDKNTQKIHLAKNSLAFDL---------GKVGLSK  244 (313)
T ss_dssp             CEEECCSSEEEEECCGGGGGC-CCSEEECCSSEEEECCG--GGCCTTSCCSEEECCSSEECCBG---------GGCCCCT
T ss_pred             ccccccccccccccccccccc-ccccccccccccccccc--ccccccccccccccccccccccc---------ccccccc
Confidence            555555543322333333333 33356665554433333  22456677777777776532211         1244567


Q ss_pred             ccceecccccccccccCCCCcccCCCCccEEeeccCCCcc-cccCCCcCCCCcceeecccC
Q 038945          280 KLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMK-IFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       280 ~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~~L~~L~i~~~  339 (363)
                      +|+.|+++++.--..+|..  +..+++|++|+++++ +++ .+| +...+++|+.+++.+|
T Consensus       245 ~L~~L~Ls~N~l~g~iP~~--l~~L~~L~~L~Ls~N-~l~g~iP-~~~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         245 NLNGLDLRNNRIYGTLPQG--LTQLKFLHSLNVSFN-NLCGEIP-QGGNLQRFDVSAYANN  301 (313)
T ss_dssp             TCCEEECCSSCCEECCCGG--GGGCTTCCEEECCSS-EEEEECC-CSTTGGGSCGGGTCSS
T ss_pred             ccccccCccCeecccCChH--HhCCCCCCEEECcCC-cccccCC-CcccCCCCCHHHhCCC
Confidence            8888888876433356655  677888888888765 555 555 3467778888888877

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.57  E-value=5.7e-14  Score=125.71  Aligned_cols=251  Identities=15%  Similarity=0.128  Sum_probs=164.1

Q ss_pred             hhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcc
Q 038945           38 IQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLE  117 (363)
Q Consensus        38 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~  117 (363)
                      +..+|..+  .+.+++|+++++. ++.++... +  ..+++|++|++++|. +....| ..+.++++|+.|+++++. ++
T Consensus        22 L~~lP~~l--~~~l~~L~Ls~N~-i~~l~~~~-f--~~l~~L~~L~l~~n~-~~~i~~-~~f~~l~~L~~L~l~~n~-l~   92 (305)
T d1xkua_          22 LEKVPKDL--PPDTALLDLQNNK-ITEIKDGD-F--KNLKNLHTLILINNK-ISKISP-GAFAPLVKLERLYLSKNQ-LK   92 (305)
T ss_dssp             CCSCCCSC--CTTCCEEECCSSC-CCCBCTTT-T--TTCTTCCEEECCSSC-CCCBCT-TTTTTCTTCCEEECCSSC-CS
T ss_pred             CCccCCCC--CCCCCEEECcCCc-CCCcChhH-h--hcccccccccccccc-ccccch-hhhhCCCccCEecccCCc-cC
Confidence            44556555  2679999999986 88877543 1  478999999999985 444444 348899999999999874 66


Q ss_pred             eecccccccccccccCCCCCccceeecccccccccccCcc---cchhhhhhhccccchhhHHHHHHhhhhhhhhcccccc
Q 038945          118 EVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFT---GNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNK  194 (363)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~---~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~  194 (363)
                      .++.            ..++.++.|.+.+.. +..+....   ......+....            ............+.
T Consensus        93 ~l~~------------~~~~~l~~L~~~~n~-l~~l~~~~~~~~~~~~~l~~~~------------n~~~~~~~~~~~~~  147 (305)
T d1xkua_          93 ELPE------------KMPKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGT------------NPLKSSGIENGAFQ  147 (305)
T ss_dssp             BCCS------------SCCTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCS------------SCCCGGGBCTTGGG
T ss_pred             cCcc------------chhhhhhhhhccccc-hhhhhhhhhhcccccccccccc------------ccccccCCCccccc
Confidence            5542            134456666655421 21110000   00000000000            00011112233466


Q ss_pred             cCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccc
Q 038945          195 VFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAED  274 (363)
Q Consensus       195 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  274 (363)
                      .++.|+.+++.++. +..++..  .+++|++|+++++......+  ..+..++.++.|+++++. +..+       ....
T Consensus       148 ~l~~L~~l~l~~n~-l~~l~~~--~~~~L~~L~l~~n~~~~~~~--~~~~~~~~l~~L~~s~n~-l~~~-------~~~~  214 (305)
T d1xkua_         148 GMKKLSYIRIADTN-ITTIPQG--LPPSLTELHLDGNKITKVDA--ASLKGLNNLAKLGLSFNS-ISAV-------DNGS  214 (305)
T ss_dssp             GCTTCCEEECCSSC-CCSCCSS--CCTTCSEEECTTSCCCEECT--GGGTTCTTCCEEECCSSC-CCEE-------CTTT
T ss_pred             cccccCccccccCC-ccccCcc--cCCccCEEECCCCcCCCCCh--hHhhcccccccccccccc-cccc-------cccc
Confidence            77899999999875 3444433  47899999999875544433  236788999999999874 3333       1223


Q ss_pred             cccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCC-------cCCCCcceeecccC
Q 038945          275 CIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-------VDAPKLNKVKPTEE  339 (363)
Q Consensus       275 ~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-------~~~~~L~~L~i~~~  339 (363)
                      +..+++|++|+++++ +++.++.+  +..+++|++|+++++ +++.++.+.       ..+++|+.|++++|
T Consensus       215 ~~~l~~L~~L~L~~N-~L~~lp~~--l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N  282 (305)
T d1xkua_         215 LANTPHLRELHLNNN-KLVKVPGG--LADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSN  282 (305)
T ss_dssp             GGGSTTCCEEECCSS-CCSSCCTT--TTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred             ccccccceeeecccc-cccccccc--cccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCC
Confidence            557899999999997 78888765  778999999999886 688775432       26789999999999

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=3.8e-14  Score=130.48  Aligned_cols=80  Identities=16%  Similarity=0.226  Sum_probs=57.7

Q ss_pred             cCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCC
Q 038945           10 STPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKN   89 (363)
Q Consensus        10 ~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~   89 (363)
                      .+.+|++|.++.              ..+..+ +.+..+++|++|+++++. +++++. .    ..+++|++|++++| .
T Consensus        42 ~l~~l~~L~l~~--------------~~I~~l-~gl~~L~nL~~L~Ls~N~-l~~l~~-l----~~L~~L~~L~L~~n-~   99 (384)
T d2omza2          42 DLDQVTTLQADR--------------LGIKSI-DGVEYLNNLTQINFSNNQ-LTDITP-L----KNLTKLVDILMNNN-Q   99 (384)
T ss_dssp             HHTTCCEEECCS--------------SCCCCC-TTGGGCTTCCEEECCSSC-CCCCGG-G----TTCTTCCEEECCSS-C
T ss_pred             HhCCCCEEECCC--------------CCCCCc-cccccCCCCCEEeCcCCc-CCCCcc-c----cCCccccccccccc-c
Confidence            456788888872              122222 245668999999999986 888653 3    57999999999998 4


Q ss_pred             CcccCchhHHhhcCCCCEEEEccCC
Q 038945           90 MSSAIPANLIRCLNNLASLEVRNCD  114 (363)
Q Consensus        90 l~~~~p~~~l~~l~~L~~L~l~~~~  114 (363)
                      +.+..+   ++.+++|+.|+++++.
T Consensus       100 i~~i~~---l~~l~~L~~L~~~~~~  121 (384)
T d2omza2         100 IADITP---LANLTNLTGLTLFNNQ  121 (384)
T ss_dssp             CCCCGG---GTTCTTCCEEECCSSC
T ss_pred             cccccc---cccccccccccccccc
Confidence            555444   7889999999987643

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6.1e-15  Score=131.01  Aligned_cols=63  Identities=21%  Similarity=0.296  Sum_probs=50.5

Q ss_pred             ccCCCccEEEeccCcCccc-ccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccC
Q 038945          194 KVFANLKSLEISECSQLQK-LVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDC  257 (363)
Q Consensus       194 ~~l~~L~~L~l~~c~~l~~-l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  257 (363)
                      ..+++|++|++++|..+++ ....+..+++|++|++++|..+++.... .+..+|+|+.|++.+|
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~-~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHH-HHhcCCCCCEEeeeCC
Confidence            3458999999999987763 3456678999999999999988775432 3567899999999998

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=7e-13  Score=116.27  Aligned_cols=109  Identities=17%  Similarity=0.139  Sum_probs=64.1

Q ss_pred             cCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCC
Q 038945          218 CYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCL  297 (363)
Q Consensus       218 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~  297 (363)
                      ..+++|+.|+++++... .++. .....+.+++.|++.++. +..+.       ...+..++.|+.++++++ +++.++.
T Consensus        97 ~~l~~L~~L~l~~~~~~-~~~~-~~~~~l~~l~~L~l~~n~-l~~l~-------~~~~~~l~~l~~l~l~~N-~l~~~~~  165 (266)
T d1p9ag_          97 QTLPALTVLDVSFNRLT-SLPL-GALRGLGELQELYLKGNE-LKTLP-------PGLLTPTPKLEKLSLANN-NLTELPA  165 (266)
T ss_dssp             TTCTTCCEEECCSSCCC-CCCS-STTTTCTTCCEEECTTSC-CCCCC-------TTTTTTCTTCCEEECTTS-CCSCCCT
T ss_pred             ccccccccccccccccc-eeec-cccccccccccccccccc-cceec-------cccccccccchhcccccc-cccccCc
Confidence            34445555555444222 2221 113445566666665543 22221       111334667777777764 5555554


Q ss_pred             CCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945          298 GNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       298 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~  339 (363)
                      +. +..+++|++|+++++ +++.+|.++..+++|+.|++++|
T Consensus       166 ~~-~~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         166 GL-LNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             TT-TTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSC
T ss_pred             cc-cccccccceeecccC-CCcccChhHCCCCCCCEEEecCC
Confidence            42 456788888888776 58888888888889999999988

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.47  E-value=4e-13  Score=120.62  Aligned_cols=223  Identities=15%  Similarity=0.100  Sum_probs=156.6

Q ss_pred             ccceEecccCcCcc---cccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccc
Q 038945           50 DIENIKLSLFPRLK---EIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELN  126 (363)
Q Consensus        50 ~L~~L~l~~~~~l~---~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~  126 (363)
                      ++++|+++++. +.   .+|...    +.+++|++|++++|.++.+.+|.. ++++++|++|+++++. +..+....   
T Consensus        51 ~v~~L~L~~~~-l~g~~~lp~~l----~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~-l~~~~~~~---  120 (313)
T d1ogqa_          51 RVNNLDLSGLN-LPKPYPIPSSL----ANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTN-VSGAIPDF---  120 (313)
T ss_dssp             CEEEEEEECCC-CSSCEECCGGG----GGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEEC-CEEECCGG---
T ss_pred             EEEEEECCCCC-CCCCCCCChHH----hcCccccccccccccccccccccc-cccccccchhhhcccc-cccccccc---
Confidence            58999999875 44   345555    689999999999877787667776 8899999999999875 43332111   


Q ss_pred             ccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEecc
Q 038945          127 ADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISE  206 (363)
Q Consensus       127 ~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~  206 (363)
                            ...+.+|+.++++.+.....+                                    +..+..++.|+.+++++
T Consensus       121 ------~~~~~~L~~l~l~~N~~~~~~------------------------------------p~~l~~l~~L~~l~l~~  158 (313)
T d1ogqa_         121 ------LSQIKTLVTLDFSYNALSGTL------------------------------------PPSISSLPNLVGITFDG  158 (313)
T ss_dssp             ------GGGCTTCCEEECCSSEEESCC------------------------------------CGGGGGCTTCCEEECCS
T ss_pred             ------ccchhhhcccccccccccccC------------------------------------chhhccCcccceeeccc
Confidence                  235678888888765433222                                    33466779999999999


Q ss_pred             CcCcccccccccCCCCC-CEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceec
Q 038945          207 CSQLQKLVPASCYLENL-ATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLG  285 (363)
Q Consensus       207 c~~l~~l~~~~~~~~~L-~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~  285 (363)
                      +.....+|..+..+..+ +.++++.+ .+...... .+..+ .+..+++..+.....+.        .....+++++.++
T Consensus       159 n~l~~~ip~~~~~l~~l~~~l~~~~n-~l~~~~~~-~~~~l-~~~~l~l~~~~~~~~~~--------~~~~~~~~l~~l~  227 (313)
T d1ogqa_         159 NRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPP-TFANL-NLAFVDLSRNMLEGDAS--------VLFGSDKNTQKIH  227 (313)
T ss_dssp             SCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCG-GGGGC-CCSEEECCSSEEEECCG--------GGCCTTSCCSEEE
T ss_pred             cccccccccccccccccccccccccc-cccccccc-ccccc-ccccccccccccccccc--------ccccccccccccc
Confidence            88766777777777776 67777665 44443332 23333 44467777765433222        2245678999999


Q ss_pred             ccccccccccCCCCcccCCCCccEEeeccCCCcc-cccCCCcCCCCcceeecccC
Q 038945          286 LDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMK-IFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       286 l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~~L~~L~i~~~  339 (363)
                      +.++. +......  ...+++|+.|+++++ +++ .+|..+..+++|++|++++|
T Consensus       228 ~~~~~-l~~~~~~--~~~~~~L~~L~Ls~N-~l~g~iP~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         228 LAKNS-LAFDLGK--VGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             CCSSE-ECCBGGG--CCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSS
T ss_pred             ccccc-ccccccc--cccccccccccCccC-eecccCChHHhCCCCCCEEECcCC
Confidence            99874 3333333  566889999999877 555 79999999999999999998

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=1e-12  Score=120.67  Aligned_cols=79  Identities=15%  Similarity=0.341  Sum_probs=60.0

Q ss_pred             cccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccc
Q 038945           47 GFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELN  126 (363)
Q Consensus        47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~  126 (363)
                      .+.+|++|+++++. ++.+. +.    ..+++|++|+++++ ++++..+   ++++++|++|++++|. +..++.     
T Consensus        42 ~l~~l~~L~l~~~~-I~~l~-gl----~~L~nL~~L~Ls~N-~l~~l~~---l~~L~~L~~L~L~~n~-i~~i~~-----  105 (384)
T d2omza2          42 DLDQVTTLQADRLG-IKSID-GV----EYLNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNNQ-IADITP-----  105 (384)
T ss_dssp             HHTTCCEEECCSSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCGG-----
T ss_pred             HhCCCCEEECCCCC-CCCcc-cc----ccCCCCCEEeCcCC-cCCCCcc---ccCCcccccccccccc-cccccc-----
Confidence            45789999999986 88753 33    47999999999998 6777544   8899999999999875 554442     


Q ss_pred             ccccccCCCCCccceeecccc
Q 038945          127 ADKEHLCPLFPKLFSLRLIDL  147 (363)
Q Consensus       127 ~~~~~~~~~l~~L~~L~l~~~  147 (363)
                            ...+++|+.|++.++
T Consensus       106 ------l~~l~~L~~L~~~~~  120 (384)
T d2omza2         106 ------LANLTNLTGLTLFNN  120 (384)
T ss_dssp             ------GTTCTTCCEEECCSS
T ss_pred             ------ccccccccccccccc
Confidence                  235677777776543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.4e-12  Score=112.82  Aligned_cols=134  Identities=13%  Similarity=0.081  Sum_probs=85.6

Q ss_pred             cccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccc
Q 038945          193 NKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEA  272 (363)
Q Consensus       193 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  272 (363)
                      +.++++|+.|+++++......+.....+.+|+.+++++. .++.++.. .+..+++|+.|+++++. ++.+.       .
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N-~l~~i~~~-~f~~~~~L~~L~l~~N~-l~~l~-------~  170 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDD-TFRDLGNLTHLFLHGNR-ISSVP-------E  170 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CCEEC-------T
T ss_pred             hcccccCCEEecCCcccccccccccchhcccchhhhccc-cccccChh-HhccccchhhcccccCc-ccccc-------h
Confidence            444566777777766543333334456777788888764 45555432 34567788888888764 33331       1


Q ss_pred             cccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccC-CCcCCCCcceeecccC
Q 038945          273 EDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPKLNKVKPTEE  339 (363)
Q Consensus       273 ~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~i~~~  339 (363)
                      ..+..+++|+.+++.++. +..+.... +..+++|++|+++++ ++..++. .+..+++|+.|++++|
T Consensus       171 ~~f~~l~~L~~l~l~~N~-l~~i~~~~-f~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNR-VAHVHPHA-FRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             TTTTTCTTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             hhhccccccchhhhhhcc-ccccChhH-hhhhhhccccccccc-ccccccccccccccccCEEEecCC
Confidence            234567888888888763 44443332 677888899988766 4555543 4558888999999988

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=2.4e-12  Score=110.01  Aligned_cols=122  Identities=17%  Similarity=0.202  Sum_probs=72.5

Q ss_pred             cCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccc
Q 038945          195 VFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAED  274 (363)
Q Consensus       195 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  274 (363)
                      .++.|+.+.++++.....  ..+...+.++.+.++++.. ....   .+...++|+.|++.+|.. ..         ...
T Consensus       105 ~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~-~~~~---~~~~~~~L~~L~l~~n~~-~~---------~~~  168 (227)
T d1h6ua2         105 GLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQI-TNIS---PLAGLTNLQYLSIGNAQV-SD---------LTP  168 (227)
T ss_dssp             TCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCC-CCCG---GGGGCTTCCEEECCSSCC-CC---------CGG
T ss_pred             cccccccccccccccccc--chhccccchhhhhchhhhh-chhh---hhcccccccccccccccc-cc---------chh
Confidence            345666666665543221  1223456666777665532 2221   134567777777776642 11         112


Q ss_pred             cccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeeccc
Q 038945          275 CIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTE  338 (363)
Q Consensus       275 ~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~  338 (363)
                      +..+++|+.|+++++ .+++++.   ...+++|++|++++| +++.++ .+.++++|+.|+++.
T Consensus       169 l~~l~~L~~L~Ls~n-~l~~l~~---l~~l~~L~~L~Ls~N-~lt~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         169 LANLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEE
T ss_pred             hcccccceecccCCC-ccCCChh---hcCCCCCCEEECcCC-cCCCCc-ccccCCCCCEEEeeC
Confidence            445777888888776 5666543   456788888888777 677765 366888888888763

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.37  E-value=3.1e-11  Score=107.45  Aligned_cols=230  Identities=14%  Similarity=0.151  Sum_probs=149.0

Q ss_pred             CCCceeEEEeeecccceeeeccCCCchhhhhhh-ccccccccceEecccCcCcccccc-cCcCCCCCCCCccEEEecCCC
Q 038945           11 TPKLHKVQVTVKEEGELYHREGNLNSTIQKCYI-EMIGFRDIENIKLSLFPRLKEIWH-NQALPVSFFNNLRHLVLDDCK   88 (363)
Q Consensus        11 ~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~-~~~l~~~~l~~L~~L~l~~c~   88 (363)
                      .+++++|+++              .+.+.++|. .+.++++|++|+++++. +..++. ..    ..+++|++|+++++ 
T Consensus        30 ~~~l~~L~Ls--------------~N~i~~l~~~~f~~l~~L~~L~l~~n~-~~~i~~~~f----~~l~~L~~L~l~~n-   89 (305)
T d1xkua_          30 PPDTALLDLQ--------------NNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAF----APLVKLERLYLSKN-   89 (305)
T ss_dssp             CTTCCEEECC--------------SSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTT----TTCTTCCEEECCSS-
T ss_pred             CCCCCEEECc--------------CCcCCCcChhHhhcccccccccccccc-ccccchhhh----hCCCccCEecccCC-
Confidence            3789999998              234556664 46778999999999998 666532 33    57899999999998 


Q ss_pred             CCcccCchhHHhhcCCCCEEEEccCCCcceeccccccc-----------------ccccccCCCCCccceeecccccccc
Q 038945           89 NMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELN-----------------ADKEHLCPLFPKLFSLRLIDLPKLK  151 (363)
Q Consensus        89 ~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~-----------------~~~~~~~~~l~~L~~L~l~~~~~L~  151 (363)
                      +++. .|.   ...+.|+.|...++. +..++......                 .........+++|+.+.+.++. +.
T Consensus        90 ~l~~-l~~---~~~~~l~~L~~~~n~-l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~  163 (305)
T d1xkua_          90 QLKE-LPE---KMPKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-IT  163 (305)
T ss_dssp             CCSB-CCS---SCCTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CC
T ss_pred             ccCc-Ccc---chhhhhhhhhccccc-hhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-cc
Confidence            5665 442   235678888887643 43332110000                 0000001122233333333321 11


Q ss_pred             cccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccC
Q 038945          152 RFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKC  231 (363)
Q Consensus       152 ~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c  231 (363)
                      .+.                                      ...+++|+.|+++++......+..+..++.++.|+++++
T Consensus       164 ~l~--------------------------------------~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n  205 (305)
T d1xkua_         164 TIP--------------------------------------QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN  205 (305)
T ss_dssp             SCC--------------------------------------SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred             ccC--------------------------------------cccCCccCEEECCCCcCCCCChhHhhccccccccccccc
Confidence            110                                      122478999999998876666667778899999999987


Q ss_pred             cCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCC-----cccCCCC
Q 038945          232 HGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGN-----YALEFPS  306 (363)
Q Consensus       232 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~-----~~~~~~~  306 (363)
                       .++.++. .++..+++|++|++++|. ++.++.        .+..+++|++|+++++ .++++....     .....++
T Consensus       206 -~l~~~~~-~~~~~l~~L~~L~L~~N~-L~~lp~--------~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~  273 (305)
T d1xkua_         206 -SISAVDN-GSLANTPHLRELHLNNNK-LVKVPG--------GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKAS  273 (305)
T ss_dssp             -CCCEECT-TTGGGSTTCCEEECCSSC-CSSCCT--------TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCC
T ss_pred             -ccccccc-ccccccccceeeeccccc-cccccc--------ccccccCCCEEECCCC-ccCccChhhccCcchhcccCC
Confidence             5666654 346789999999999984 554422        2567899999999996 677775432     1234578


Q ss_pred             ccEEeeccCC
Q 038945          307 LEHVVVRQCP  316 (363)
Q Consensus       307 L~~L~l~~c~  316 (363)
                      |+.|++.+++
T Consensus       274 L~~L~L~~N~  283 (305)
T d1xkua_         274 YSGVSLFSNP  283 (305)
T ss_dssp             CSEEECCSSS
T ss_pred             CCEEECCCCc
Confidence            9999998875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.36  E-value=8.5e-12  Score=106.49  Aligned_cols=189  Identities=18%  Similarity=0.189  Sum_probs=137.0

Q ss_pred             ccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccc
Q 038945           46 IGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEEL  125 (363)
Q Consensus        46 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~  125 (363)
                      ..+.+|++|++.++. ++++. +.    ..+++|++|+++++ .+.+..+   +..+++|+.++++++. ++.+..    
T Consensus        38 ~~l~~L~~L~l~~~~-i~~l~-~l----~~l~~L~~L~ls~n-~i~~~~~---l~~l~~l~~l~~~~n~-~~~i~~----  102 (227)
T d1h6ua2          38 ADLDGITTLSAFGTG-VTTIE-GV----QYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP-LKNVSA----  102 (227)
T ss_dssp             HHHHTCCEEECTTSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC-CSCCGG----
T ss_pred             HHcCCcCEEECCCCC-CCcch-hH----hcCCCCcEeecCCc-eeecccc---cccccccccccccccc-cccccc----
Confidence            457899999999996 88753 34    58999999999998 4665545   8889999999998764 444432    


Q ss_pred             cccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEec
Q 038945          126 NADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEIS  205 (363)
Q Consensus       126 ~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~  205 (363)
                             ...+++|+.+.++++.....                                      ..+...+.++.+.++
T Consensus       103 -------l~~l~~L~~l~l~~~~~~~~--------------------------------------~~~~~~~~~~~l~~~  137 (227)
T d1h6ua2         103 -------IAGLQSIKTLDLTSTQITDV--------------------------------------TPLAGLSNLQVLYLD  137 (227)
T ss_dssp             -------GTTCTTCCEEECTTSCCCCC--------------------------------------GGGTTCTTCCEEECC
T ss_pred             -------cccccccccccccccccccc--------------------------------------chhccccchhhhhch
Confidence                   23578899999887642211                                      112334788888888


Q ss_pred             cCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceec
Q 038945          206 ECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLG  285 (363)
Q Consensus       206 ~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~  285 (363)
                      ++.....  ..+..+++|++|.++++. +...+.   ++.+++|+.|++++|. ++++         ..+..+++|++|+
T Consensus       138 ~~~~~~~--~~~~~~~~L~~L~l~~n~-~~~~~~---l~~l~~L~~L~Ls~n~-l~~l---------~~l~~l~~L~~L~  201 (227)
T d1h6ua2         138 LNQITNI--SPLAGLTNLQYLSIGNAQ-VSDLTP---LANLSKLTTLKADDNK-ISDI---------SPLASLPNLIEVH  201 (227)
T ss_dssp             SSCCCCC--GGGGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCCC---------GGGGGCTTCCEEE
T ss_pred             hhhhchh--hhhccccccccccccccc-cccchh---hcccccceecccCCCc-cCCC---------hhhcCCCCCCEEE
Confidence            7753322  234578899999998874 443322   5688999999999984 5543         2245789999999


Q ss_pred             ccccccccccCCCCcccCCCCccEEeecc
Q 038945          286 LDCLPSLTSFCLGNYALEFPSLEHVVVRQ  314 (363)
Q Consensus       286 l~~c~~L~~~~~~~~~~~~~~L~~L~l~~  314 (363)
                      +++| .+++++.   ...+++|+.|++++
T Consensus       202 Ls~N-~lt~i~~---l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         202 LKNN-QISDVSP---LANTSNLFIVTLTN  226 (227)
T ss_dssp             CTTS-CCCBCGG---GTTCTTCCEEEEEE
T ss_pred             CcCC-cCCCCcc---cccCCCCCEEEeeC
Confidence            9998 6887763   56799999999864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.5e-11  Score=106.17  Aligned_cols=90  Identities=19%  Similarity=0.167  Sum_probs=52.5

Q ss_pred             hhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcc
Q 038945           38 IQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLE  117 (363)
Q Consensus        38 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~  117 (363)
                      +..+|..+.  +++++|+|+++. ++.++... +  ..+++|++|+++++ +++.. +.  ++.+++|++|+++++. +.
T Consensus        22 L~~iP~~lp--~~l~~L~Ls~N~-i~~l~~~~-f--~~l~~L~~L~L~~N-~l~~l-~~--~~~l~~L~~L~Ls~N~-l~   90 (266)
T d1p9ag_          22 LTALPPDLP--KDTTILHLSENL-LYTFSLAT-L--MPYTRLTQLNLDRA-ELTKL-QV--DGTLPVLGTLDLSHNQ-LQ   90 (266)
T ss_dssp             CSSCCSCCC--TTCCEEECTTSC-CSEEEGGG-G--TTCTTCCEEECTTS-CCCEE-EC--CSCCTTCCEEECCSSC-CS
T ss_pred             CCeeCcCcC--cCCCEEECcCCc-CCCcCHHH-h--hccccccccccccc-ccccc-cc--cccccccccccccccc-cc
Confidence            334554442  467777777775 66655432 1  35777777777776 45543 32  4567777777777653 43


Q ss_pred             eecccccccccccccCCCCCccceeeccccc
Q 038945          118 EVLHLEELNADKEHLCPLFPKLFSLRLIDLP  148 (363)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  148 (363)
                      ..+.          ....+++|+.|+++++.
T Consensus        91 ~~~~----------~~~~l~~L~~L~l~~~~  111 (266)
T d1p9ag_          91 SLPL----------LGQTLPALTVLDVSFNR  111 (266)
T ss_dssp             SCCC----------CTTTCTTCCEEECCSSC
T ss_pred             cccc----------ccccccccccccccccc
Confidence            3221          12356677777776553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.9e-11  Score=105.80  Aligned_cols=212  Identities=16%  Similarity=0.101  Sum_probs=137.1

Q ss_pred             hhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcc
Q 038945           38 IQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLE  117 (363)
Q Consensus        38 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~  117 (363)
                      +..+|..+.  +.+++|+|+++. ++.++... +  ..+++|++|+++++ ++....+ .....+..++.+.+.....+.
T Consensus        23 L~~iP~~ip--~~~~~L~Ls~N~-i~~i~~~~-f--~~l~~L~~L~ls~n-~l~~i~~-~~~~~~~~~~~l~~~~~~~~~   94 (284)
T d1ozna_          23 LQAVPVGIP--AASQRIFLHGNR-ISHVPAAS-F--RACRNLTILWLHSN-VLARIDA-AAFTGLALLEQLDLSDNAQLR   94 (284)
T ss_dssp             CSSCCTTCC--TTCSEEECTTSC-CCEECTTT-T--TTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSCTTCC
T ss_pred             CCccCCCCC--CCCCEEECcCCc-CCCCCHHH-h--hccccccccccccc-ccccccc-ccccccccccccccccccccc
Confidence            334554442  568999999986 88877543 1  46889999999877 4554343 347778889998887777666


Q ss_pred             eecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCC
Q 038945          118 EVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFA  197 (363)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~  197 (363)
                      .++..         ...++++|+.|+++.+.. ..+.                                   ......+.
T Consensus        95 ~l~~~---------~~~~l~~L~~L~l~~n~~-~~~~-----------------------------------~~~~~~~~  129 (284)
T d1ozna_          95 SVDPA---------TFHGLGRLHTLHLDRCGL-QELG-----------------------------------PGLFRGLA  129 (284)
T ss_dssp             CCCTT---------TTTTCTTCCEEECTTSCC-CCCC-----------------------------------TTTTTTCT
T ss_pred             cccch---------hhcccccCCEEecCCccc-cccc-----------------------------------ccccchhc
Confidence            55421         134678888888887642 2211                                   11233346


Q ss_pred             CccEEEeccCcCccccc-ccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccc
Q 038945          198 NLKSLEISECSQLQKLV-PASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCI  276 (363)
Q Consensus       198 ~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  276 (363)
                      .|+.++++++. ++.++ ..+..+++|++|+++++ .++.++.. .+..+++|+++++.++... .+       ....+.
T Consensus       130 ~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~-~f~~l~~L~~l~l~~N~l~-~i-------~~~~f~  198 (284)
T d1ozna_         130 ALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISSVPER-AFRGLHSLDRLLLHQNRVA-HV-------HPHAFR  198 (284)
T ss_dssp             TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSSCCC-EE-------CTTTTT
T ss_pred             ccchhhhcccc-ccccChhHhccccchhhcccccC-cccccchh-hhccccccchhhhhhcccc-cc-------ChhHhh
Confidence            78888888765 44443 34556778888888876 56666543 3557788888888876532 22       122355


Q ss_pred             cccccceecccccccccccCCCCcccCCCCccEEeeccC
Q 038945          277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC  315 (363)
Q Consensus       277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c  315 (363)
                      .+++|++|+++++ .+..++... +..+++|++|++++.
T Consensus       199 ~l~~L~~L~l~~N-~i~~~~~~~-~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         199 DLGRLMTLYLFAN-NLSALPTEA-LAPLRALQYLRLNDN  235 (284)
T ss_dssp             TCTTCCEEECCSS-CCSCCCHHH-HTTCTTCCEEECCSS
T ss_pred             hhhhccccccccc-ccccccccc-cccccccCEEEecCC
Confidence            6788888888875 455554432 556788888888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.24  E-value=6.3e-11  Score=98.88  Aligned_cols=56  Identities=16%  Similarity=0.385  Sum_probs=31.0

Q ss_pred             ccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccC
Q 038945           48 FRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNC  113 (363)
Q Consensus        48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~  113 (363)
                      ++++++|+++++. ++++. +.    ..+++|++|++++| ++++..+   ++++++|++|+++++
T Consensus        39 l~~l~~L~l~~~~-i~~l~-~l----~~l~nL~~L~Ls~N-~l~~~~~---l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          39 LDQVTTLQADRLG-IKSID-GV----EYLNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNN   94 (199)
T ss_dssp             HTTCCEEECTTSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS
T ss_pred             hcCCCEEECCCCC-CCCcc-cc----ccCCCcCcCccccc-cccCccc---ccCCccccccccccc
Confidence            4556666666654 55432 22    35666666666665 4444333   556666666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.23  E-value=5.7e-11  Score=100.06  Aligned_cols=98  Identities=16%  Similarity=0.219  Sum_probs=51.4

Q ss_pred             CCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945          196 FANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC  275 (363)
Q Consensus       196 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  275 (363)
                      +++|+.|+++++... .+ ..+..+++++.++++++ .++..+   ....+++|+.++++++. +.++         ..+
T Consensus       111 l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n-~l~~~~---~~~~l~~L~~l~l~~n~-l~~i---------~~l  174 (210)
T d1h6ta2         111 LKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNN-KITDIT---VLSRLTKLDTLSLEDNQ-ISDI---------VPL  174 (210)
T ss_dssp             CTTCCEEECTTSCCC-CC-GGGGGCTTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSSC-CCCC---------GGG
T ss_pred             ccccccccccccccc-cc-ccccccccccccccccc-cccccc---ccccccccccccccccc-cccc---------ccc
Confidence            455555555555421 12 22344566666666554 233322   23456667777666653 2221         113


Q ss_pred             ccccccceecccccccccccCCCCcccCCCCccEEeec
Q 038945          276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVR  313 (363)
Q Consensus       276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~  313 (363)
                      ..+++|+.|+++++ .+++++.   ...+++|++|+++
T Consensus       175 ~~l~~L~~L~Ls~N-~i~~l~~---l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         175 AGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELF  208 (210)
T ss_dssp             TTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEE
T ss_pred             cCCCCCCEEECCCC-CCCCChh---hcCCCCCCEEEcc
Confidence            45667777777665 4555542   4556777777764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.21  E-value=9.8e-11  Score=97.67  Aligned_cols=162  Identities=17%  Similarity=0.218  Sum_probs=104.1

Q ss_pred             cCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCC
Q 038945           10 STPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKN   89 (363)
Q Consensus        10 ~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~   89 (363)
                      .++++++|.+..          ..    +..+ ..+..+++|++|+++++. ++.++. .    ..+++|++|++++|. 
T Consensus        38 ~l~~l~~L~l~~----------~~----i~~l-~~l~~l~nL~~L~Ls~N~-l~~~~~-l----~~l~~L~~L~l~~n~-   95 (199)
T d2omxa2          38 DLDQVTTLQADR----------LG----IKSI-DGVEYLNNLTQINFSNNQ-LTDITP-L----KNLTKLVDILMNNNQ-   95 (199)
T ss_dssp             HHTTCCEEECTT----------SC----CCCC-TTGGGCTTCCEEECCSSC-CCCCGG-G----TTCTTCCEEECCSSC-
T ss_pred             HhcCCCEEECCC----------CC----CCCc-cccccCCCcCcCcccccc-ccCccc-c----cCCcccccccccccc-
Confidence            467788888771          11    2222 235668999999999986 887543 3    589999999999884 


Q ss_pred             CcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccc
Q 038945           90 MSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFI  169 (363)
Q Consensus        90 l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~  169 (363)
                      +.. .+.  ++.+++|+.|+++++... .+..           ...+++|+.|+++++. +..+                
T Consensus        96 ~~~-~~~--l~~l~~L~~L~l~~~~~~-~~~~-----------~~~l~~L~~L~l~~n~-l~~~----------------  143 (199)
T d2omxa2          96 IAD-ITP--LANLTNLTGLTLFNNQIT-DIDP-----------LKNLTNLNRLELSSNT-ISDI----------------  143 (199)
T ss_dssp             CCC-CGG--GTTCTTCSEEECCSSCCC-CCGG-----------GTTCTTCSEEECCSSC-CCCC----------------
T ss_pred             ccc-ccc--cccccccccccccccccc-cccc-----------cchhhhhHHhhhhhhh-hccc----------------
Confidence            443 332  788999999999877543 2221           2357788888887653 3221                


Q ss_pred             cchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhcccc
Q 038945          170 RIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNL  249 (363)
Q Consensus       170 ~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L  249 (363)
                                           +.+..+++|+.|++.+|. ++.++ .+..+++|++|+++++ .+++++.   +..+++|
T Consensus       144 ---------------------~~l~~~~~L~~L~l~~n~-l~~l~-~l~~l~~L~~L~ls~N-~i~~i~~---l~~L~~L  196 (199)
T d2omxa2         144 ---------------------SALSGLTSLQQLNFSSNQ-VTDLK-PLANLTTLERLDISSN-KVSDISV---LAKLTNL  196 (199)
T ss_dssp             ---------------------GGGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCCEEECCSS-CCCCCGG---GGGCTTC
T ss_pred             ---------------------cccccccccccccccccc-ccCCc-cccCCCCCCEEECCCC-CCCCCcc---ccCCCCC
Confidence                                 123445777777777764 34442 2456677777777776 3555432   3456666


Q ss_pred             CeE
Q 038945          250 ERM  252 (363)
Q Consensus       250 ~~L  252 (363)
                      +.|
T Consensus       197 ~~L  199 (199)
T d2omxa2         197 ESL  199 (199)
T ss_dssp             SEE
T ss_pred             CcC
Confidence            654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.20  E-value=1.6e-10  Score=104.14  Aligned_cols=69  Identities=13%  Similarity=0.043  Sum_probs=52.0

Q ss_pred             cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccCCCCCCccccCCcchHHH
Q 038945          277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTK  356 (363)
Q Consensus       277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~  356 (363)
                      .+++|++|++++| .++.++..     +++|++|++++| +++.+|..   +++|++|++++|     ++.-.++++..+
T Consensus       282 ~~~~L~~L~Ls~N-~l~~lp~~-----~~~L~~L~L~~N-~L~~l~~~---~~~L~~L~L~~N-----~L~~lp~~~~~L  346 (353)
T d1jl5a_         282 LPPSLEELNVSNN-KLIELPAL-----PPRLERLIASFN-HLAEVPEL---PQNLKQLHVEYN-----PLREFPDIPESV  346 (353)
T ss_dssp             CCTTCCEEECCSS-CCSCCCCC-----CTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-----CCSSCCCCCTTC
T ss_pred             cCCCCCEEECCCC-ccCccccc-----cCCCCEEECCCC-cCCccccc---cCCCCEEECcCC-----cCCCCCcccccc
Confidence            3578999999987 57766543     789999999666 78888753   568999999999     777666676665


Q ss_pred             HHhh
Q 038945          357 KKLF  360 (363)
Q Consensus       357 ~~~~  360 (363)
                      +.|+
T Consensus       347 ~~L~  350 (353)
T d1jl5a_         347 EDLR  350 (353)
T ss_dssp             CEEE
T ss_pred             CeeE
Confidence            5443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.18  E-value=1.7e-10  Score=97.04  Aligned_cols=101  Identities=13%  Similarity=0.142  Sum_probs=56.0

Q ss_pred             ccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccC
Q 038945          217 SCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFC  296 (363)
Q Consensus       217 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~  296 (363)
                      +..+++|+.|+++++.. ..++   .+..+++++.++++++.. .+         ......+++|+.+++.++ .++.++
T Consensus       108 l~~l~~L~~L~l~~~~~-~~~~---~l~~l~~l~~l~~~~n~l-~~---------~~~~~~l~~L~~l~l~~n-~l~~i~  172 (210)
T d1h6ta2         108 LKDLKKLKSLSLEHNGI-SDIN---GLVHLPQLESLYLGNNKI-TD---------ITVLSRLTKLDTLSLEDN-QISDIV  172 (210)
T ss_dssp             GTTCTTCCEEECTTSCC-CCCG---GGGGCTTCCEEECCSSCC-CC---------CGGGGGCTTCSEEECCSS-CCCCCG
T ss_pred             ccccccccccccccccc-cccc---cccccccccccccccccc-cc---------cccccccccccccccccc-cccccc
Confidence            34566677777766542 2222   144566677776665532 11         111234666777777665 344443


Q ss_pred             CCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecc
Q 038945          297 LGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPT  337 (363)
Q Consensus       297 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~  337 (363)
                      .   ...+++|++|++++| .++.++ .+..+++|+.|+++
T Consensus       173 ~---l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         173 P---LAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             G---GTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEE
T ss_pred             c---ccCCCCCCEEECCCC-CCCCCh-hhcCCCCCCEEEcc
Confidence            2   445667777777555 566554 35566777777665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4e-10  Score=96.59  Aligned_cols=64  Identities=19%  Similarity=0.344  Sum_probs=30.8

Q ss_pred             cccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcc
Q 038945           49 RDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLE  117 (363)
Q Consensus        49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~  117 (363)
                      +++++|+++++. ++.++... +  ..+++|++|+++++.... ..+...+..+++++++.+.++..+.
T Consensus        29 ~~l~~L~Ls~n~-i~~l~~~~-f--~~l~~L~~L~ls~n~~~~-~i~~~~f~~l~~l~~l~~~~~n~l~   92 (242)
T d1xwdc1          29 RNAIELRFVLTK-LRVIQKGA-F--SGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIEKANNLL   92 (242)
T ss_dssp             SCCSEEEEESCC-CCEECTTT-T--TTCTTCCEEEEESCTTCC-EECSSSEESCTTCCEEEEECCTTCC
T ss_pred             CCCCEEECcCCc-CCccChhH-h--hccchhhhhhhccccccc-eeecccccccccccccccccccccc
Confidence            345566666554 55544322 1  245566666665553322 2222224455555555555544443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.1e-10  Score=98.42  Aligned_cols=222  Identities=14%  Similarity=0.074  Sum_probs=135.5

Q ss_pred             ceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccc
Q 038945           52 ENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEH  131 (363)
Q Consensus        52 ~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  131 (363)
                      +.++.++.. ++++|...      ..++++|+++++ ++.. .|...+.++++|++|+++++.....++...        
T Consensus        11 ~~i~c~~~~-l~~iP~~l------~~~l~~L~Ls~n-~i~~-l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~--------   73 (242)
T d1xwdc1          11 RVFLCQESK-VTEIPSDL------PRNAIELRFVLT-KLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADV--------   73 (242)
T ss_dssp             SEEEEESCS-CSSCCSCS------CSCCSEEEEESC-CCCE-ECTTTTTTCTTCCEEEEESCTTCCEECSSS--------
T ss_pred             CEEEEeCCC-CCCcCCCC------CCCCCEEECcCC-cCCc-cChhHhhccchhhhhhhccccccceeeccc--------
Confidence            455555543 66655333      358999999987 4665 444447889999999999876554443110        


Q ss_pred             cCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcc
Q 038945          132 LCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQ  211 (363)
Q Consensus       132 ~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~  211 (363)
                       ..++++++.+.+..+.++..+.                                   ...+.++++|+.++++++. +.
T Consensus        74 -f~~l~~l~~l~~~~~n~l~~~~-----------------------------------~~~~~~l~~L~~l~l~~~~-l~  116 (242)
T d1xwdc1          74 -FSNLPKLHEIRIEKANNLLYIN-----------------------------------PEAFQNLPNLQYLLISNTG-IK  116 (242)
T ss_dssp             -EESCTTCCEEEEECCTTCCEEC-----------------------------------TTSEECCTTCCEEEEESCC-CC
T ss_pred             -cccccccccccccccccccccc-----------------------------------cccccccccccccccchhh-hc
Confidence             1256778888877766665432                                   2235667899999999875 33


Q ss_pred             cccccccCCCCCCEEeec--cCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceeccccc
Q 038945          212 KLVPASCYLENLATLEVS--KCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCL  289 (363)
Q Consensus       212 ~l~~~~~~~~~L~~L~l~--~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c  289 (363)
                      ..+. ...+.+++.+...  +...+..++...+.+....++.|++.++. ++.+...        ....++++.+....+
T Consensus       117 ~~~~-~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~-l~~i~~~--------~~~~~~l~~~~~l~~  186 (242)
T d1xwdc1         117 HLPD-VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNC--------AFNGTQLDELNLSDN  186 (242)
T ss_dssp             SCCC-CTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTT--------TTTTCCEEEEECTTC
T ss_pred             cccc-ccccccccccccccccccccccccccccccccccceeeeccccc-ccccccc--------cccchhhhccccccc
Confidence            3322 2334445544432  33455555543333333577788877643 3332111        123455666655555


Q ss_pred             ccccccCCCCcccCCCCccEEeeccCCCcccccCC-CcCCCCcceeecccC
Q 038945          290 PSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEE  339 (363)
Q Consensus       290 ~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~i~~~  339 (363)
                      ..++.++... +..+++|++|+++++ +++.+|.. +.++++|+.++++..
T Consensus       187 n~l~~l~~~~-f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         187 NNLEELPNDV-FHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             TTCCCCCTTT-TTTSCCCSEEECTTS-CCCCCCSSSCTTCCEEESSSEESS
T ss_pred             cccccccHHH-hcCCCCCCEEECCCC-cCCccCHHHHcCCcccccCcCCCC
Confidence            6788877653 566899999999776 57777654 457888888777643

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.03  E-value=1.5e-09  Score=97.51  Aligned_cols=71  Identities=18%  Similarity=0.157  Sum_probs=51.9

Q ss_pred             hccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC
Q 038945          245 SLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG  324 (363)
Q Consensus       245 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~  324 (363)
                      .+++|++|++++|. ++.++           ..+++|+.|++++| .++.++..     +++|++|++++|+ ++.+|..
T Consensus       282 ~~~~L~~L~Ls~N~-l~~lp-----------~~~~~L~~L~L~~N-~L~~l~~~-----~~~L~~L~L~~N~-L~~lp~~  342 (353)
T d1jl5a_         282 LPPSLEELNVSNNK-LIELP-----------ALPPRLERLIASFN-HLAEVPEL-----PQNLKQLHVEYNP-LREFPDI  342 (353)
T ss_dssp             CCTTCCEEECCSSC-CSCCC-----------CCCTTCCEEECCSS-CCSCCCCC-----CTTCCEEECCSSC-CSSCCCC
T ss_pred             cCCCCCEEECCCCc-cCccc-----------cccCCCCEEECCCC-cCCccccc-----cCCCCEEECcCCc-CCCCCcc
Confidence            35799999999984 44432           13789999999886 67777643     5789999998885 8888764


Q ss_pred             CcCCCCcceeecc
Q 038945          325 VVDAPKLNKVKPT  337 (363)
Q Consensus       325 ~~~~~~L~~L~i~  337 (363)
                      .   .+|+.|.+.
T Consensus       343 ~---~~L~~L~~~  352 (353)
T d1jl5a_         343 P---ESVEDLRMN  352 (353)
T ss_dssp             C---TTCCEEECC
T ss_pred             c---cccCeeECc
Confidence            3   356666553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2.7e-08  Score=79.65  Aligned_cols=112  Identities=15%  Similarity=0.169  Sum_probs=82.3

Q ss_pred             cccccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEec
Q 038945            6 LGILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLD   85 (363)
Q Consensus         6 ~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~   85 (363)
                      +++.++.+|+.|++++              ..+..++.....+++|++|+++++. ++.++ +.    ..+++|++|+++
T Consensus        12 ~~~~n~~~lr~L~L~~--------------n~I~~i~~~~~~l~~L~~L~Ls~N~-i~~l~-~~----~~l~~L~~L~ls   71 (162)
T d1a9na_          12 AQYTNAVRDRELDLRG--------------YKIPVIENLGATLDQFDAIDFSDNE-IRKLD-GF----PLLRRLKTLLVN   71 (162)
T ss_dssp             CEEECTTSCEEEECTT--------------SCCCSCCCGGGGTTCCSEEECCSSC-CCEEC-CC----CCCSSCCEEECC
T ss_pred             HhccCcCcCcEEECCC--------------CCCCccCccccccccCCEEECCCCC-CCccC-Cc----ccCcchhhhhcc
Confidence            4466788899999992              2333444334567999999999997 88864 33    479999999999


Q ss_pred             CCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeeccccc
Q 038945           86 DCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP  148 (363)
Q Consensus        86 ~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  148 (363)
                      +| ++.. .+..++..+++|++|+++++. +..++.+..        ...+++|+.|++++++
T Consensus        72 ~N-~i~~-l~~~~~~~l~~L~~L~L~~N~-i~~~~~l~~--------l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          72 NN-RICR-IGEGLDQALPDLTELILTNNS-LVELGDLDP--------LASLKSLTYLCILRNP  123 (162)
T ss_dssp             SS-CCCE-ECSCHHHHCTTCCEEECCSCC-CCCGGGGGG--------GGGCTTCCEEECCSSG
T ss_pred             cc-cccC-CCccccccccccccceecccc-ccccccccc--------cccccccchhhcCCCc
Confidence            98 4665 444557889999999999874 555543322        2368999999999885

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.2e-08  Score=81.87  Aligned_cols=132  Identities=12%  Similarity=0.085  Sum_probs=94.4

Q ss_pred             ccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccc
Q 038945          192 SNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEE  271 (363)
Q Consensus       192 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  271 (363)
                      ...++..+++|+++++. ++.++.....+++|++|+++++ .++.++.   +..+++|+.|++++|. +..+..      
T Consensus        13 ~~~n~~~lr~L~L~~n~-I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~~---~~~l~~L~~L~ls~N~-i~~l~~------   80 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDN-EIRKLDG---FPLLRRLKTLLVNNNR-ICRIGE------   80 (162)
T ss_dssp             EEECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSS-CCCEECC---CCCCSSCCEEECCSSC-CCEECS------
T ss_pred             hccCcCcCcEEECCCCC-CCccCccccccccCCEEECCCC-CCCccCC---cccCcchhhhhccccc-ccCCCc------
Confidence            34556789999999985 5666555567899999999996 5666643   5678999999999986 333311      


Q ss_pred             ccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccC----CCcCCCCcceeeccc
Q 038945          272 AEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ----GVVDAPKLNKVKPTE  338 (363)
Q Consensus       272 ~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~~~~L~~L~i~~  338 (363)
                       .....+++|+.|++.++ .+++++.......+++|++|++++|+ ++..+.    .+..+|+|+.|+...
T Consensus        81 -~~~~~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~~  148 (162)
T d1a9na_          81 -GLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQK  148 (162)
T ss_dssp             -CHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             -cccccccccccceeccc-cccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCCC
Confidence             11235889999999986 45555442225678999999998884 454542    345889999988553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.66  E-value=8.4e-08  Score=78.85  Aligned_cols=124  Identities=10%  Similarity=0.080  Sum_probs=91.3

Q ss_pred             EEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccc
Q 038945          201 SLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRK  280 (363)
Q Consensus       201 ~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~  280 (363)
                      .++.++. .++.+|..+  .+++++|++++. .++.......+..+++|+.|+++++.. ..+       ....+..+++
T Consensus        12 ~v~Cs~~-~L~~iP~~l--p~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~i-~~~-------~~~~~~~~~~   79 (192)
T d1w8aa_          12 TVDCTGR-GLKEIPRDI--PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQL-TGI-------EPNAFEGASH   79 (192)
T ss_dssp             EEECTTS-CCSSCCSCC--CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCC-CCB-------CTTTTTTCTT
T ss_pred             EEEEeCC-CcCccCCCC--CCCCCEEEeCCC-CCcccccccccCCCceEeeeecccccc-ccc-------cccccccccc
Confidence            4444433 466777654  478999999986 454433334567899999999988753 222       1223556889


Q ss_pred             cceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCC-cCCCCcceeecccC
Q 038945          281 LEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE  339 (363)
Q Consensus       281 L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~i~~~  339 (363)
                      |++|+++++ .++.++.+. +..+++|++|+++++ .++.++.+. .++++|+++++++|
T Consensus        80 L~~L~Ls~N-~l~~l~~~~-F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          80 IQELQLGEN-KIKEISNKM-FLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CCEEECCSC-CCCEECSSS-STTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTC
T ss_pred             cceeeeccc-cccccCHHH-HhCCCcccccccCCc-cccccCHHHhcCCccccccccccc
Confidence            999999986 788887764 677999999999766 788887765 48999999999999

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.53  E-value=2.2e-08  Score=90.13  Aligned_cols=281  Identities=12%  Similarity=0.045  Sum_probs=156.4

Q ss_pred             hhhhhhhccccccccceEecccCcCccccccc-CcCCCCCCCCccEEEecCCCCC--cccCc------hhHHhhcCCCCE
Q 038945           37 TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHN-QALPVSFFNNLRHLVLDDCKNM--SSAIP------ANLIRCLNNLAS  107 (363)
Q Consensus        37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~l~~~~l~~L~~L~l~~c~~l--~~~~p------~~~l~~l~~L~~  107 (363)
                      .+..+...+.....|+.|+|+++. +...... ..-.....++|+.++++++..-  ....+      ...+..+++|++
T Consensus        19 ~~~~l~~~L~~~~~l~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~   97 (344)
T d2ca6a1          19 DEKSVFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT   97 (344)
T ss_dssp             HHHTTSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred             HHHHHHHHHhhCCCCCEEECcCCc-CCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccc
Confidence            455566667778899999999875 5431100 0001146789999999877421  11112      222556889999


Q ss_pred             EEEccCCCcceec--ccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhh
Q 038945          108 LEVRNCDSLEEVL--HLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHL  185 (363)
Q Consensus       108 L~l~~~~~l~~~~--~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l  185 (363)
                      |++++|. +....  .+..       .....++|+.|+++++. +...      +...+...+..      ....     
T Consensus        98 L~L~~n~-i~~~~~~~l~~-------~l~~~~~L~~L~l~~n~-l~~~------~~~~l~~~l~~------~~~~-----  151 (344)
T d2ca6a1          98 VRLSDNA-FGPTAQEPLID-------FLSKHTPLEHLYLHNNG-LGPQ------AGAKIARALQE------LAVN-----  151 (344)
T ss_dssp             EECCSCC-CCTTTHHHHHH-------HHHHCTTCCEEECCSSC-CHHH------HHHHHHHHHHH------HHHH-----
T ss_pred             ccccccc-cccccccchhh-------hhcccccchheeccccc-cccc------ccccccccccc------cccc-----
Confidence            9999874 32211  1110       02246789999998763 2210      00000000000      0000     


Q ss_pred             hhhcccccccCCCccEEEeccCcCc----ccccccccCCCCCCEEeeccCcCccccCc----hhhhhhccccCeEeeccC
Q 038945          186 LKENAESNKVFANLKSLEISECSQL----QKLVPASCYLENLATLEVSKCHGLINLLT----LSTSESLVNLERMKMSDC  257 (363)
Q Consensus       186 ~~~~~~~l~~l~~L~~L~l~~c~~l----~~l~~~~~~~~~L~~L~l~~c~~l~~~~~----~~~~~~l~~L~~L~l~~c  257 (363)
                           ......+.|+.+.++++..-    ..+...+..++.|+.|+++.|. +..-..    ...+...++|+.|+++++
T Consensus       152 -----~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N  225 (344)
T d2ca6a1         152 -----KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN  225 (344)
T ss_dssp             -----HHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS
T ss_pred             -----cccccCcccceeecccccccccccccccchhhhhhhhccccccccc-ccccccccchhhhhcchhhhcccccccc
Confidence                 01123368888888876421    2223334567899999998874 333111    112456789999999987


Q ss_pred             cchhhhhccCccccccccccccccceecccccccccccCCCCc---c--cCCCCccEEeeccCCCccc-----ccCCCc-
Q 038945          258 KMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNY---A--LEFPSLEHVVVRQCPTMKI-----FSQGVV-  326 (363)
Q Consensus       258 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~---~--~~~~~L~~L~l~~c~~l~~-----l~~~~~-  326 (363)
                      ..-......    -...+..++.|++|++++|. +.+......   .  ...+.|++|+++++ .++.     +...+. 
T Consensus       226 ~i~~~g~~~----L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~  299 (344)
T d2ca6a1         226 TFTHLGSSA----LAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDE  299 (344)
T ss_dssp             CCHHHHHHH----HHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHH
T ss_pred             ccccccccc----ccccccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHc
Confidence            532211000    01124567899999999874 332211100   1  22467999999876 4553     333333 


Q ss_pred             CCCCcceeecccCCCCCCccccCCcchHHHHHhhh
Q 038945          327 DAPKLNKVKPTEEEDGDDEGCWEGNLNDTKKKLFN  361 (363)
Q Consensus       327 ~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      +.++|+.|++++|     .+.-+++...-+++++.
T Consensus       300 ~~~~L~~L~l~~N-----~~~~~~~~~~~l~~~~~  329 (344)
T d2ca6a1         300 KMPDLLFLELNGN-----RFSEEDDVVDEIREVFS  329 (344)
T ss_dssp             HCTTCCEEECTTS-----BSCTTSHHHHHHHHHHH
T ss_pred             cCCCCCEEECCCC-----cCCCcchHHHHHHHHHH
Confidence            6789999999999     66655555555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.51  E-value=1.1e-07  Score=72.25  Aligned_cols=85  Identities=18%  Similarity=0.170  Sum_probs=49.0

Q ss_pred             cccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccc
Q 038945           45 MIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEE  124 (363)
Q Consensus        45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~  124 (363)
                      +..++.|++|+++++. ++++|...    +.+++|+.|+++++ .++.. |.  +..+++|++|+++++ .+..++....
T Consensus        16 l~~l~~L~~L~ls~N~-l~~lp~~~----~~l~~L~~L~l~~N-~i~~l-~~--~~~l~~L~~L~l~~N-~i~~~~~~~~   85 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNR-LRALPPAL----AALRCLEVLQASDN-ALENV-DG--VANLPRLQELLLCNN-RLQQSAAIQP   85 (124)
T ss_dssp             GGGGTTCCEEECCSSC-CCCCCGGG----GGCTTCCEEECCSS-CCCCC-GG--GTTCSSCCEEECCSS-CCCSSSTTGG
T ss_pred             cccCCCCCEEECCCCc-cCcchhhh----hhhhcccccccccc-ccccc-Cc--cccccccCeEECCCC-ccCCCCCchh
Confidence            4456667777777665 66655444    45677777777765 44542 22  666777777777664 3444432211


Q ss_pred             ccccccccCCCCCccceeecccc
Q 038945          125 LNADKEHLCPLFPKLFSLRLIDL  147 (363)
Q Consensus       125 ~~~~~~~~~~~l~~L~~L~l~~~  147 (363)
                              ...+++|+.|++++.
T Consensus        86 --------l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          86 --------LVSCPRLVLLNLQGN  100 (124)
T ss_dssp             --------GGGCTTCCEEECTTS
T ss_pred             --------hcCCCCCCEEECCCC
Confidence                    124666777776653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2e-07  Score=73.93  Aligned_cols=86  Identities=14%  Similarity=0.113  Sum_probs=56.1

Q ss_pred             hhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccC
Q 038945          244 ESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ  323 (363)
Q Consensus       244 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~  323 (363)
                      ..+++|++|++.+.+.++.+       ...++..+++|+.|+++++ +++.++.+. +..+++|++|+++++ +++.+|.
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i-------~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~-f~~l~~L~~L~Ls~N-~l~~l~~   97 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHL-------ELRDLRGLGELRNLTIVKS-GLRFVAPDA-FHFTPRLSRLNLSFN-ALESLSW   97 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEE-------CGGGSCSCCCCSEEECCSS-CCCEECTTG-GGSCSCCCEEECCSS-CCSCCCS
T ss_pred             cCccccCeeecCCCcccccc-------CchhhccccccCcceeecc-ccCCccccc-ccccccccceeccCC-CCcccCh
Confidence            34556666666655545443       1223445677777777764 566665543 566778888888554 6777877


Q ss_pred             CCcCCCCcceeecccC
Q 038945          324 GVVDAPKLNKVKPTEE  339 (363)
Q Consensus       324 ~~~~~~~L~~L~i~~~  339 (363)
                      +.....+|+.|++++|
T Consensus        98 ~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          98 KTVQGLSLQELVLSGN  113 (156)
T ss_dssp             TTTCSCCCCEEECCSS
T ss_pred             hhhccccccccccCCC
Confidence            7776667888888888

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.46  E-value=3.6e-07  Score=69.38  Aligned_cols=98  Identities=20%  Similarity=0.150  Sum_probs=47.5

Q ss_pred             EEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccc
Q 038945          201 SLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRK  280 (363)
Q Consensus       201 ~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~  280 (363)
                      .|+++++. ++.++ .+..+++|++|+++++ .++.+|..  +..+++|+.|+++++. ++.+         +.+..+++
T Consensus         2 ~L~Ls~n~-l~~l~-~l~~l~~L~~L~ls~N-~l~~lp~~--~~~l~~L~~L~l~~N~-i~~l---------~~~~~l~~   66 (124)
T d1dcea3           2 VLHLAHKD-LTVLC-HLEQLLLVTHLDLSHN-RLRALPPA--LAALRCLEVLQASDNA-LENV---------DGVANLPR   66 (124)
T ss_dssp             EEECTTSC-CSSCC-CGGGGTTCCEEECCSS-CCCCCCGG--GGGCTTCCEEECCSSC-CCCC---------GGGTTCSS
T ss_pred             EEEcCCCC-CCCCc-ccccCCCCCEEECCCC-ccCcchhh--hhhhhccccccccccc-cccc---------Cccccccc
Confidence            45555543 33332 2455666666666653 45555432  4456666666666642 2221         11334555


Q ss_pred             cceecccccccccccCCCCcccCCCCccEEeecc
Q 038945          281 LEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ  314 (363)
Q Consensus       281 L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~  314 (363)
                      |+.++++++ .+.+++.......+++|+.|++++
T Consensus        67 L~~L~l~~N-~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          67 LQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             CCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             cCeEECCCC-ccCCCCCchhhcCCCCCCEEECCC
Confidence            555555553 333333211134455555555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.43  E-value=1.1e-06  Score=71.99  Aligned_cols=54  Identities=22%  Similarity=0.226  Sum_probs=28.2

Q ss_pred             ceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccC
Q 038945           52 ENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNC  113 (363)
Q Consensus        52 ~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~  113 (363)
                      +.++.++.. ++.+|.+.      .+++++|+++++ .++...+...+..+++|++|+++++
T Consensus        11 ~~v~Cs~~~-L~~iP~~l------p~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N   64 (192)
T d1w8aa_          11 TTVDCTGRG-LKEIPRDI------PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN   64 (192)
T ss_dssp             TEEECTTSC-CSSCCSCC------CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS
T ss_pred             CEEEEeCCC-cCccCCCC------CCCCCEEEeCCC-CCcccccccccCCCceEeeeecccc
Confidence            345555443 55544332      245666666665 3433343343566666666666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.42  E-value=4.4e-09  Score=87.33  Aligned_cols=145  Identities=17%  Similarity=0.208  Sum_probs=76.7

Q ss_pred             cceEeccc-CcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccc
Q 038945           51 IENIKLSL-FPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADK  129 (363)
Q Consensus        51 L~~L~l~~-~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  129 (363)
                      ++.+++++ .+.++.++...    ..+++|++|+++++ +++...+   ++.+++|++|++++|. +..++...      
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl----~~L~~L~~L~Ls~n-~I~~i~~---l~~l~~L~~L~Ls~N~-i~~i~~~~------   89 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATL----STLKACKHLALSTN-NIEKISS---LSGMENLRILSLGRNL-IKKIENLD------   89 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHH----HHTTTCCEEECSEE-EESCCCC---HHHHTTCCEEECCEEE-ECSCSSHH------
T ss_pred             cceeeeecccCchhhhhhHH----hcccccceeECccc-CCCCccc---ccCCccccChhhcccc-cccccccc------
Confidence            44555543 23344444333    45677777777765 4554322   6667777777776653 44433211      


Q ss_pred             cccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcC
Q 038945          130 EHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQ  209 (363)
Q Consensus       130 ~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~  209 (363)
                          ..+++|+.|+++++ +++.+                                     +.+..+++|+.|+++++. 
T Consensus        90 ----~~~~~L~~L~l~~N-~i~~l-------------------------------------~~~~~l~~L~~L~L~~N~-  126 (198)
T d1m9la_          90 ----AVADTLEELWISYN-QIASL-------------------------------------SGIEKLVNLRVLYMSNNK-  126 (198)
T ss_dssp             ----HHHHHCCEEECSEE-ECCCH-------------------------------------HHHHHHHHSSEEEESEEE-
T ss_pred             ----cccccccccccccc-ccccc-------------------------------------ccccccccccccccccch-
Confidence                12345666666654 23322                                     112233667777777664 


Q ss_pred             ccccc--ccccCCCCCCEEeeccCcCccccCch--------hhhhhccccCeEe
Q 038945          210 LQKLV--PASCYLENLATLEVSKCHGLINLLTL--------STSESLVNLERMK  253 (363)
Q Consensus       210 l~~l~--~~~~~~~~L~~L~l~~c~~l~~~~~~--------~~~~~l~~L~~L~  253 (363)
                      ++.++  ..+..+++|+.|++++++-....+..        .++..+|+|+.|+
T Consensus       127 i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             CCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             hccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            23322  23456778888888776432222111        1245788888887

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.32  E-value=1.1e-08  Score=84.81  Aligned_cols=130  Identities=16%  Similarity=0.194  Sum_probs=91.0

Q ss_pred             ccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccc
Q 038945          192 SNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEE  271 (363)
Q Consensus       192 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  271 (363)
                      ++..+++|++|+++++. ++.++ .+..+++|+.|+++++ .++.++.  ....+++|+.|+++++. ++.+        
T Consensus        43 sl~~L~~L~~L~Ls~n~-I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~--~~~~~~~L~~L~l~~N~-i~~l--------  108 (198)
T d1m9la_          43 TLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKIEN--LDAVADTLEELWISYNQ-IASL--------  108 (198)
T ss_dssp             HHHHTTTCCEEECSEEE-ESCCC-CHHHHTTCCEEECCEE-EECSCSS--HHHHHHHCCEEECSEEE-CCCH--------
T ss_pred             HHhcccccceeECcccC-CCCcc-cccCCccccChhhccc-ccccccc--ccccccccccccccccc-cccc--------
Confidence            35567899999999875 55663 4678999999999987 5676653  24556789999999874 4433        


Q ss_pred             ccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC----------CcCCCCcceeecc
Q 038945          272 AEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG----------VVDAPKLNKVKPT  337 (363)
Q Consensus       272 ~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~----------~~~~~~L~~L~i~  337 (363)
                       +.+..+++|+.|+++++ .++.++.......+++|+.|++++++-....+..          +..+|+|+.||-.
T Consensus       109 -~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~  182 (198)
T d1m9la_         109 -SGIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM  182 (198)
T ss_dssp             -HHHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSG
T ss_pred             -ccccccccccccccccc-hhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCc
Confidence             12456899999999986 4555543112567999999999887532222211          3478999998743

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=4.7e-07  Score=83.57  Aligned_cols=93  Identities=15%  Similarity=0.155  Sum_probs=57.2

Q ss_pred             ccCCCceeEEEeeecccceeeeccCCCc-hhhhhhhccccccccceEecccCcCcccccc---cCcCCCCCCCCccEEEe
Q 038945            9 LSTPKLHKVQVTVKEEGELYHREGNLNS-TIQKCYIEMIGFRDIENIKLSLFPRLKEIWH---NQALPVSFFNNLRHLVL   84 (363)
Q Consensus         9 ~~~~~L~~l~~~~~~~~~~~~~~~~l~~-~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~l~~~~l~~L~~L~l   84 (363)
                      ..++++++|.+.          +..+.. ....+...+..+++|++|+++++. +++...   ...+. ....+|++|++
T Consensus        24 ~~l~~l~~L~L~----------~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~-~~~~~L~~L~L   91 (460)
T d1z7xw1          24 PLLQQCQVVRLD----------DCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQ-TPSCKIQKLSL   91 (460)
T ss_dssp             HHHTTCSEEEEE----------SSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTC-STTCCCCEEEC
T ss_pred             HhCCCCCEEEeC----------CCCCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHHh-cCCCCCCEEEC
Confidence            456777888877          223322 455566666778889999998875 653211   11011 13357999999


Q ss_pred             cCCCCCcccCc---hhHHhhcCCCCEEEEccCC
Q 038945           85 DDCKNMSSAIP---ANLIRCLNNLASLEVRNCD  114 (363)
Q Consensus        85 ~~c~~l~~~~p---~~~l~~l~~L~~L~l~~~~  114 (363)
                      ++| ++++...   ...+..+++|++|+++++.
T Consensus        92 ~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          92 QNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             CCC-Cccccccccccchhhcccccccccccccc
Confidence            988 4554321   1225668889999988764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.08  E-value=8.9e-07  Score=79.28  Aligned_cols=260  Identities=13%  Similarity=0.106  Sum_probs=144.4

Q ss_pred             ccccccCCCceeEEEeeecccceeeeccCCCc-hhhhhhhccccccccceEecccCcCcccccc----cCc-C--CCCCC
Q 038945            5 SLGILSTPKLHKVQVTVKEEGELYHREGNLNS-TIQKCYIEMIGFRDIENIKLSLFPRLKEIWH----NQA-L--PVSFF   76 (363)
Q Consensus         5 ~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~-~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~-l--~~~~l   76 (363)
                      .......++|+.|.+++          ..++. ....+-..+...++|+.|+++++. ......    +.. +  ....+
T Consensus        24 ~~~L~~~~~l~~L~Ls~----------n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~l~~~l~~~   92 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSG----------NTIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKC   92 (344)
T ss_dssp             SHHHHHCSCCCEEECTT----------SEECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTC
T ss_pred             HHHHhhCCCCCEEECcC----------CcCCHHHHHHHHHHHHhCCCCCEEECCCCc-ccccccccchHHHHHHHHHhhC
Confidence            33456678899999882          12222 344555666778999999998764 221110    000 0  01357


Q ss_pred             CCccEEEecCCCCCcccCc---hhHHhhcCCCCEEEEccCCCcceecc--c-cccc-ccccccCCCCCccceeecccccc
Q 038945           77 NNLRHLVLDDCKNMSSAIP---ANLIRCLNNLASLEVRNCDSLEEVLH--L-EELN-ADKEHLCPLFPKLFSLRLIDLPK  149 (363)
Q Consensus        77 ~~L~~L~l~~c~~l~~~~p---~~~l~~l~~L~~L~l~~~~~l~~~~~--~-~~~~-~~~~~~~~~l~~L~~L~l~~~~~  149 (363)
                      ++|++|++++| .+.....   ...+..+++|++|++++|. +.....  + .... ..........+.|+.+.+++.. 
T Consensus        93 ~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~-  169 (344)
T d2ca6a1          93 PKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-  169 (344)
T ss_dssp             TTCCEEECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-
T ss_pred             CCccccccccc-ccccccccchhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeeccccc-
Confidence            89999999988 4443222   2235678999999999875 322110  0 0000 0000011246678888887542 


Q ss_pred             cccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcc-----cccccccCCCCCC
Q 038945          150 LKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQ-----KLVPASCYLENLA  224 (363)
Q Consensus       150 L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~-----~l~~~~~~~~~L~  224 (363)
                      +..-      ....                         ....+...+.|+.|++++|..-.     .+...+..+++|+
T Consensus       170 i~~~------~~~~-------------------------l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~  218 (344)
T d2ca6a1         170 LENG------SMKE-------------------------WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK  218 (344)
T ss_dssp             CTGG------GHHH-------------------------HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC
T ss_pred             cccc------cccc-------------------------ccchhhhhhhhcccccccccccccccccchhhhhcchhhhc
Confidence            2210      0000                         01123334789999999886322     1233456789999


Q ss_pred             EEeeccCcCccccCc---hhhhhhccccCeEeeccCcchhhhhccCcccccccc--ccccccceecccccccccccCCCC
Q 038945          225 TLEVSKCHGLINLLT---LSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC--IVFRKLEYLGLDCLPSLTSFCLGN  299 (363)
Q Consensus       225 ~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~--~~l~~L~~L~l~~c~~L~~~~~~~  299 (363)
                      .|+++++. ++....   ...+...++|+.|++++|.--......    -.+.+  ...+.|++|+++++. +.......
T Consensus       219 ~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~----l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~  292 (344)
T d2ca6a1         219 VLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA----VVDAFSKLENIGLQTLRLQYNE-IELDAVRT  292 (344)
T ss_dssp             EEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH----HHHHHHTCSSCCCCEEECCSSC-CBHHHHHH
T ss_pred             cccccccc-ccccccccccccccccccchhhhhhcCccCchhhHH----HHHHhhhccCCCCCEEECCCCc-CChHHHHH
Confidence            99998874 333211   123457789999999998632111100    00011  124679999999863 44321110


Q ss_pred             ---cc-cCCCCccEEeeccC
Q 038945          300 ---YA-LEFPSLEHVVVRQC  315 (363)
Q Consensus       300 ---~~-~~~~~L~~L~l~~c  315 (363)
                         .. ..+++|++|+++++
T Consensus       293 l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         293 LKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             HHHHHHHHCTTCCEEECTTS
T ss_pred             HHHHHHccCCCCCEEECCCC
Confidence               01 24788999999765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=7.5e-06  Score=64.44  Aligned_cols=106  Identities=17%  Similarity=0.141  Sum_probs=72.0

Q ss_pred             CccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccc
Q 038945          198 NLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIV  277 (363)
Q Consensus       198 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  277 (363)
                      ..+.++.++.. +...+..+..+++|++|++++.+.++.++.. .+..+++|+.|+++++. ++.+       ...++..
T Consensus         9 ~~~~l~c~~~~-~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~Ls~N~-l~~i-------~~~~f~~   78 (156)
T d2ifga3           9 GSSGLRCTRDG-ALDSLHHLPGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSG-LRFV-------APDAFHF   78 (156)
T ss_dssp             SSSCEECCSSC-CCTTTTTSCSCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSSC-CCEE-------CTTGGGS
T ss_pred             CCCeEEecCCC-CccCcccccCccccCeeecCCCccccccCch-hhccccccCcceeeccc-cCCc-------ccccccc
Confidence            44556665433 3445566667788888888877778777653 35678888888888864 4443       2223556


Q ss_pred             ccccceecccccccccccCCCCcccCCCCccEEeeccCC
Q 038945          278 FRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP  316 (363)
Q Consensus       278 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~  316 (363)
                      +++|++|+++++ .++.++.+  .....+|++|++++.+
T Consensus        79 l~~L~~L~Ls~N-~l~~l~~~--~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          79 TPRLSRLNLSFN-ALESLSWK--TVQGLSLQELVLSGNP  114 (156)
T ss_dssp             CSCCCEEECCSS-CCSCCCST--TTCSCCCCEEECCSSC
T ss_pred             cccccceeccCC-CCcccChh--hhccccccccccCCCc
Confidence            888888888884 67777776  4555578888887654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.00065  Score=61.62  Aligned_cols=113  Identities=15%  Similarity=0.147  Sum_probs=63.9

Q ss_pred             CCccEEEeccCcCcccc--cccccCCCCCCEEeeccCcCccccCch---hhhhhccccCeEeeccCcchhhhhccCcccc
Q 038945          197 ANLKSLEISECSQLQKL--VPASCYLENLATLEVSKCHGLINLLTL---STSESLVNLERMKMSDCKMMEEIIQSQVGEE  271 (363)
Q Consensus       197 ~~L~~L~l~~c~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  271 (363)
                      ..|++|++++.. +.+.  ...+..+++++.|++++|. +++....   ..+..+++|+.|+++++. +++.....   -
T Consensus         2 ~~l~~ld~~~~~-i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~---l   75 (460)
T d1z7xw1           2 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHC---V   75 (460)
T ss_dssp             EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHH---H
T ss_pred             CCCCEEEeeCCc-CChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHH---H
Confidence            367888886554 3322  2234567888899998883 5543211   224567889999988875 33210000   0


Q ss_pred             cccc-ccccccceecccccccccccCCC---CcccCCCCccEEeeccCC
Q 038945          272 AEDC-IVFRKLEYLGLDCLPSLTSFCLG---NYALEFPSLEHVVVRQCP  316 (363)
Q Consensus       272 ~~~~-~~l~~L~~L~l~~c~~L~~~~~~---~~~~~~~~L~~L~l~~c~  316 (363)
                      ...+ ...++|++|++++|. +++....   .....+++|++|+++++.
T Consensus        76 ~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          76 LQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHhcCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence            0001 123468888888873 5443211   113457788888887763

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0011  Score=51.74  Aligned_cols=91  Identities=19%  Similarity=0.092  Sum_probs=57.7

Q ss_pred             ccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccc
Q 038945           46 IGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEEL  125 (363)
Q Consensus        46 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~  125 (363)
                      ..++.|++|+++++. ++.+.... .....+++|+.|+++++ .+++..+...+ ...+|++|++.+++-........  
T Consensus        62 ~~~~~L~~L~Ls~N~-i~~l~~~~-~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l-~~~~L~~L~L~~Npl~~~~~~~~--  135 (162)
T d1koha1          62 ENIPELLSLNLSNNR-LYRLDDMS-SIVQKAPNLKILNLSGN-ELKSERELDKI-KGLKLEELWLDGNSLSDTFRDQS--  135 (162)
T ss_dssp             HHCTTCCCCCCCSSC-CCCCSGGG-THHHHSTTCCCCCCTTS-CCCCGGGHHHH-TTCCCSSCCCTTSTTSSSSSSHH--
T ss_pred             HhCCCCCEeeCCCcc-ccCCchhH-HHHhhCCcccccccccC-ccccchhhhhh-hccccceeecCCCCcCcCcccch--
Confidence            458999999999997 77654221 01136899999999997 56654443323 35579999999876332211110  


Q ss_pred             cccccccCCCCCccceee
Q 038945          126 NADKEHLCPLFPKLFSLR  143 (363)
Q Consensus       126 ~~~~~~~~~~l~~L~~L~  143 (363)
                       .+...+...+|+|+.|+
T Consensus       136 -~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         136 -TYISAIRERFPKLLRLD  152 (162)
T ss_dssp             -HHHHHHHTTSTTCCEET
T ss_pred             -hHHHHHHHHCCCCCEEC
Confidence             00112244789999886

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.00085  Score=52.44  Aligned_cols=86  Identities=16%  Similarity=0.103  Sum_probs=54.8

Q ss_pred             CCCCccEEEecCCCCCcccCc-hhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccc
Q 038945           75 FFNNLRHLVLDDCKNMSSAIP-ANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRF  153 (363)
Q Consensus        75 ~l~~L~~L~l~~c~~l~~~~p-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l  153 (363)
                      .+++|++|+++++ ++++..+ ...+..+++|+.|+++++ .+.++......         ...+|+.+++.+.+-... 
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l---------~~~~L~~L~L~~Npl~~~-  130 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKI---------KGLKLEELWLDGNSLSDT-  130 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHH---------TTCCCSSCCCTTSTTSSS-
T ss_pred             hCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccC-ccccchhhhhh---------hccccceeecCCCCcCcC-
Confidence            6899999999998 5665443 344788999999999985 47766543321         344688999988653222 


Q ss_pred             cCcccchhhhhhhccccch
Q 038945          154 CNFTGNIIELLECNFIRIK  172 (363)
Q Consensus       154 ~~~~~~~L~~l~~~~~~l~  172 (363)
                      ......-...+...||++.
T Consensus       131 ~~~~~~y~~~i~~~~P~L~  149 (162)
T d1koha1         131 FRDQSTYISAIRERFPKLL  149 (162)
T ss_dssp             SSSHHHHHHHHHTTSTTCC
T ss_pred             cccchhHHHHHHHHCCCCC
Confidence            1111112333445566655

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.21  E-value=0.008  Score=46.83  Aligned_cols=62  Identities=13%  Similarity=0.266  Sum_probs=33.1

Q ss_pred             CCCccEEEeccCcCcc-----cccccccCCCCCCEEeeccCcCccccCc---hhhhhhccccCeEeeccCc
Q 038945          196 FANLKSLEISECSQLQ-----KLVPASCYLENLATLEVSKCHGLINLLT---LSTSESLVNLERMKMSDCK  258 (363)
Q Consensus       196 l~~L~~L~l~~c~~l~-----~l~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~  258 (363)
                      .+.|++|+++++..+.     .+...+...++|++|++++|. +++-..   ...+...+.|+.|++++|.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehhh
Confidence            3677777777654332     122234455677777777653 332111   1123344667777776664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.73  E-value=0.017  Score=44.87  Aligned_cols=116  Identities=11%  Similarity=0.049  Sum_probs=69.2

Q ss_pred             CCCCCCEEeeccCcCccccCchh---hhhhccccCeEeeccCcchhhhhccCccccccccccccccceeccccccccccc
Q 038945          219 YLENLATLEVSKCHGLINLLTLS---TSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSF  295 (363)
Q Consensus       219 ~~~~L~~L~l~~c~~l~~~~~~~---~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~  295 (363)
                      ..++|++|+++++..++.-....   .+...++|+.|++++|..-......    -.+.+...+.|+.|++++| .+.+-
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~----la~~L~~n~~L~~L~L~~n-~i~~~   87 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARG----LIELIETSPSLRVLNVESN-FLTPE   87 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTT----HHHHHHHCSSCCEEECCSS-BCCHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHH----Hhhhhhhcccccceeeehh-hcchH
Confidence            46889999998876665432222   2345578999999988532211110    1112344678999999987 44432


Q ss_pred             CCC---CcccCCCCccEEeeccCC--Ccc-----cccCCCcCCCCcceeecccC
Q 038945          296 CLG---NYALEFPSLEHVVVRQCP--TMK-----IFSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       296 ~~~---~~~~~~~~L~~L~l~~c~--~l~-----~l~~~~~~~~~L~~L~i~~~  339 (363)
                      ...   ......++|++|+++++.  .+.     .+...+...++|+.++++.+
T Consensus        88 g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          88 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            111   014456789999997653  221     23334446788999988766

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.65  E-value=0.019  Score=44.40  Aligned_cols=63  Identities=5%  Similarity=0.008  Sum_probs=36.7

Q ss_pred             CCCccEEEeccCcCcc-----cccccccCCCCCCEEeeccCcCccccCc---hhhhhhccccCeEeeccCcc
Q 038945          196 FANLKSLEISECSQLQ-----KLVPASCYLENLATLEVSKCHGLINLLT---LSTSESLVNLERMKMSDCKM  259 (363)
Q Consensus       196 l~~L~~L~l~~c~~l~-----~l~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~  259 (363)
                      .+.|++|+++++..+.     .+...+...++|++|++++| .++.-..   ...+...++++.+++.+|..
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            3788888887754432     22233456778888888877 3333211   11234557777777777653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.51  E-value=0.013  Score=45.42  Aligned_cols=115  Identities=9%  Similarity=0.003  Sum_probs=71.8

Q ss_pred             CCCCCCEEeeccCcCccccCchhh---hhhccccCeEeeccCcchhhhhccCccccccccccccccceeccccccc----
Q 038945          219 YLENLATLEVSKCHGLINLLTLST---SESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPS----  291 (363)
Q Consensus       219 ~~~~L~~L~l~~c~~l~~~~~~~~---~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~----  291 (363)
                      ..+.|++|+++++..++.-....+   +...++|+.|++++|.--......    -.+.+...++++.+++.+|.-    
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~----L~~~l~~~~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFA----LAEMLKVNNTLKSLNVESNFISGSG   90 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHH----HHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHH----HHHHHhhcccchhhhhccccccchh
Confidence            568999999998766655332222   346789999999998532211110    011234467899999988632    


Q ss_pred             ccccCCCCcccCCCCccEEeeccCC-Cccc-----ccCCCcCCCCcceeecccC
Q 038945          292 LTSFCLGNYALEFPSLEHVVVRQCP-TMKI-----FSQGVVDAPKLNKVKPTEE  339 (363)
Q Consensus       292 L~~~~~~~~~~~~~~L~~L~l~~c~-~l~~-----l~~~~~~~~~L~~L~i~~~  339 (363)
                      ...+...  ....++|+.+++..+. .+..     +...+...++|+.|+++.+
T Consensus        91 ~~~l~~~--l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          91 ILALVEA--LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHG--GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHH--HHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            1222222  4557889998886553 4543     3334447889999999866