Citrus Sinensis ID: 038991

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
Protein Sequence
QDRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQGDFTDATMERFEMSKLYLHSYRVSGSGRFKGWVSLAVMRDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRVSLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVILLR
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHccccHHHHHHHHHcccccccccccccEEEEEccccccccHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHcccEEEEEEEccccccccccccccccccEEEEEEcEEcccccccccccccccEEEEEEEEccHHHHHHHHHccccccEEEEEEEEEcccccEEEEEEcccccEEEEEEEEEcccccccccccEEEEEccccEEEEEEEcccccEEEEcccccEEEEEEEEEcccccccHHHHHHHHcccccccEEEEEcccEEEc
Secondary Structure Prediction (SSPRO)
cccHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHccccEEEEEEcccccEEccccEEEccEEEEEEEEEEEEccccccccccHHHEEEEEEEEEccHHHHHHHHHcccHHHHEEEEEcccccccEEEEEEEccccEEEEEEEccccccccccccccEEEEEcccEEEEEEEcccccccEEEcccccEEEEEEEEEcccccccHHHHHHHHHHHHccEEEEEcccEEEEc
Coil and Loop (DISEMBL)
qdrnssllDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDAtlcirqgdftdaTMERFEMSKLYLHSYrvsgsgrfkGWVSLAVMRDVRELELNIEnqqrlelpesiyscRSLEVlkldydfdiavpvsgmcfpnlkFLRVSlqypenqlteklfsscpsIEELCLKVYLkydgpatnfiissstLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSyevhdlqflQTVNLAILFLQWSVLNPWEVVQLLNGILNcksltlssgvillr
Flexible Loop (DISEMBL)
qdrnsslldSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQGDFTDATMERFEMSKLYLHSYRVSGSGRFKGWVSLAVMRDVRELELnienqqrlelpesiYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRVSLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGIlncksltlssgvillr
Low Complexity Region (SEG)
QDRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQGDFTDATMERFEMSKLYLHSYRVSGSGRFKGWVSLAVMRDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRVSLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVILLR
Disordered region (IsUnstruct)
*******LDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQGDFTDATMERFEMSKLYLHSYRVSGSGRFKGWVSLAVMRDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRVSLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL**
Disordered Region (DISOPRED)
QDRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQGDFTDATMERFEMSKLYLHSYRVSGSGRFKGWVSLAVMRDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRVSLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVILLR
Disordered Region (DISEMBL)
********DSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQGDFTDATMERFEMSKLYLHSYRVSGSGRFKGWVSLAVMRDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRVSLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVILLR
Disordered Region (DISPRO)
***NSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQGDFTDATMERFEMSKLYLHSYRVSGSGRFKGWVSLAVMRDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRVSLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVILLR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
QDRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQGDFTDATMERFEMSKLYLHSYRVSGSGRFKGWVSLAVMRDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRVSLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVILLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	287	2.2.26 [Sep-21-2011]
Q501E9	455	F-box/FBD/LRR-repeat prot	yes	no	0.749	0.472	0.325	2e-16
Q9SCQ5	427	Putative FBD-associated F	no	no	0.770	0.517	0.289	4e-14
Q9FZ52	449	F-box/FBD/LRR-repeat prot	no	no	0.818	0.523	0.270	5e-14
Q9FM87	430	Putative FBD-associated F	no	no	0.668	0.446	0.310	5e-14
Q9SV82	409	FBD-associated F-box prot	no	no	0.585	0.410	0.336	6e-14
Q6NKX3	448	F-box/FBD/LRR-repeat prot	no	no	0.770	0.493	0.310	8e-14
Q1PFK0	364	F-box/LRR-repeat protein	no	no	0.585	0.461	0.331	1e-13
Q9T0F1	316	F-box protein At4g09920 O	no	no	0.578	0.525	0.335	2e-13
Q9LQM1	422	Probable FBD-associated F	no	no	0.756	0.514	0.298	3e-13
Q9FJC1	426	Putative FBD-associated F	no	no	0.836	0.563	0.291	9e-13

>sp|Q501E9|FDL20_ARATH F-box/FBD/LRR-repeat protein At3g51530 OS=Arabidopsis thaliana GN=At3g51530 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 122/240 (50%), Gaps = 25/240 (10%)

Query: 1   QDRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQGDFTD- 59
           +DR S L + +L  ILS L TK+ ++T +LS RW  +   +Q L F+++  I   DF + 
Sbjct: 29  EDRISELPEVLLLQILSSLPTKLVISTSVLSKRWLSLWKMVQRLEFESSRNIY--DFAEN 86

Query: 60  ATMERFEMSKLYLHSYRVSGSGRFKG-----WVSLAVMRDVRE--LELNIENQQRLELPE 112
            T          L S  +    +F G     W ++A  R VRE  L+L+  +  R+  P 
Sbjct: 87  VTRSLLSHKAPVLESLHLKVGDQFDGVYVGVWATIAFTRHVREFVLDLSSYHGPRVRFPT 146

Query: 113 SIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLR----VSLQYPENQLTEKLFSSCPSI 168
           S++   +LE LKLDY + I VP    C  ++K LR    +S+ Y  ++    LF+SCP++
Sbjct: 147 SLFCFDTLETLKLDYVY-IYVP----CPVSMKSLRTLHLLSVVYKGDESGHNLFASCPNL 201

Query: 169 EELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHV 228
           E L L+    +D    NFII + +LK    T+L+ D  F+        +I AP L+ L +
Sbjct: 202 EHLVLRRGFFFDA-VVNFIIDAPSLK----TLLLSD-PFSARESSRGYVIKAPSLKYLGI 255

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCQ5|FBD10_ARATH Putative FBD-associated F-box protein At3g50710 OS=Arabidopsis thaliana GN=At3g50710 PE=4 SV=1

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 117/245 (47%), Gaps = 24/245 (9%)

Query: 2   DRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQG------ 55
           DR S+L D +L  I+S L TK  V T +LS RW+ +   +  L FD    +         
Sbjct: 2   DRISNLSDDLLLKIVSSLPTKDVVVTMLLSKRWKFLWMMVPKLRFDDEFELEPSYYGRFL 61

Query: 56  DFTDATMERFEMSKLYLHSYRVS---GSGRFKGWVSLAVMRDVRELELN-----IENQQR 107
            + D +M       L    + V     S     W+ + ++R++RELE++         + 
Sbjct: 62  KYVDKSMVLNRAQVLETVKFNVGPCCSSEDIATWIRIGMVRNMRELEISHCEGYFREHRS 121

Query: 108 LELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLR-VSLQYPENQLTEKLFSSCP 166
           ++LP+S+Y+   LEVLKL     + VP+  +CFP+LK L  V ++Y   +   +L S CP
Sbjct: 122 IKLPKSLYTYEKLEVLKLASTVVLNVPID-VCFPSLKSLHLVCVEYKTKKSHRRLLSGCP 180

Query: 167 SIEELCL-KVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQL 225
            +EEL L K Y  +     +F +   TL+      ++D     + +F    ++ AP L+ 
Sbjct: 181 VLEELVLDKSYNSFH--VRSFYVEIPTLQSL---SILDTSGELYGDF--TFVVNAPALKY 233

Query: 226 LHVVD 230
            + VD
Sbjct: 234 FNFVD 238

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ52|FDL3_ARATH F-box/FBD/LRR-repeat protein At1g16930 OS=Arabidopsis thaliana GN=At1g16930 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 129/270 (47%), Gaps = 35/270 (12%)

Query: 2   DRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQ------- 54
           DR S+L DS+LC ILS L+TK  V T +LS RWR++   +  L  D+             
Sbjct: 15  DRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDLDSNNFPDDDVFVSFV 74

Query: 55  ----GDFTDATMERFEMSKLYLHSYRVSGSGRFKGWVSLAVMRDVRELELNIENQ----- 105
               G   +  +ERF++    ++      + RFK W++  + R  R    N+ N+     
Sbjct: 75  NRFLGSENEQHLERFKL----IYEVNEHDASRFKSWINAVIKR--RVCHFNVHNEVDDDD 128

Query: 106 QRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRVSL-QYPENQLTEKLFSS 164
           + +++P S+YSC  L  L+L Y   +  P S +  P +K + + + +Y  +   E L S 
Sbjct: 129 ELVKMPLSLYSCERLVNLQL-YRVALDHPES-VSLPCVKIMHLDMVKYDADSTLEILISG 186

Query: 165 CPSIEELCLKVYLKYDGPATNFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLL 223
           CP +EEL +   ++    +   + + S +LK F     +D   +   N  H   I AP L
Sbjct: 187 CPVLEELTI---VRDPNDSLEVVCVRSQSLKSFK----IDSERYESQN--HVVTIDAPRL 237

Query: 224 QLLHVVDDLMVSYEVHDLQFLQTVNLAILF 253
           + +++ D    S+ +H++     V++ ++F
Sbjct: 238 EYMNLCDHRSDSFIIHNIGPFAKVDIDVIF 267

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM87|FBD26_ARATH Putative FBD-associated F-box protein At5g56440 OS=Arabidopsis thaliana GN=At5g56440 PE=4 SV=1

 Score = 78.6 bits (192), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 14/206 (6%)

Query: 2   DRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLF-DATLC----IRQGD 56
           DR S L D V+  ILSF+ TK+ V+T +LS RWR++   +  L + D +L      R   
Sbjct: 2   DRISLLPDDVVFKILSFVPTKVVVSTNLLSKRWRYLWKHVPKLDYRDPSLVDTEHWRASR 61

Query: 57  FTDATM---ERFEMSKLYLHSYRVSGSGRFKGWVSLAVMRDVRELEL--NIENQQRLELP 111
           F D  +   E   +  L+L   R       + W+S+A+ R VR L +   I +   + LP
Sbjct: 62  FVDKFLLLHEAPVLETLHLSLSRNCPPSDIETWISVAISRRVRNLHIYRYIPSTGPIRLP 121

Query: 112 ESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRVSL-QYPENQLTEKLFSSCPSIEE 170
            S+Y+C +L  L L  DF +       CF +LK L +   ++  +++  +L S CP +E 
Sbjct: 122 RSLYTCETLVSLYLLLDFTVDDAPFMFCFRSLKVLVLLFAKFSSDEIVNRLLSGCPVLEG 181

Query: 171 LCLKVYLKYDGPATNFIISSSTLKRF 196
           L L   ++ +    NF I++ +L+R 
Sbjct: 182 LIL---IRRNDNVKNFTIAAPSLQRL 204

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV82|FBD40_ARATH FBD-associated F-box protein At4g10400 OS=Arabidopsis thaliana GN=At4g10400 PE=2 SV=2

 Score = 78.2 bits (191), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 2   DRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQGDFTDAT 61
           DR S L D VL  ILSF+ TK+ V+T ILS RW  +   L  L F +    R  +     
Sbjct: 2   DRISGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKFGSK---RYSESEFKR 58

Query: 62  MERFEMSKLYLHSYRVSGSGRF------------KGWVSLAVMRDVRELELNIEN--QQR 107
           ++ F    L LH   V  S R             + WV +AV R +REL++   +  +++
Sbjct: 59  LQCFLDRNLPLHRAPVIESFRLVLSDSHFKPEDIRMWVVVAVSRYIRELKIYSSHYGEKQ 118

Query: 108 LELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCP 166
             LP S+Y+C+SL +LKLD    + VP   +C P+LK L +  ++Y +    ++L  +CP
Sbjct: 119 NILPSSLYTCKSLVILKLDGGVLLDVP-RMVCLPSLKTLELKGVRYFKQGSLQRLLCNCP 177

Query: 167 SIEELCL 173
            +E+L +
Sbjct: 178 VLEDLVV 184

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NKX3|FDL14_ARATH F-box/FBD/LRR-repeat protein At2g04230 OS=Arabidopsis thaliana GN=At2g04230 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 24/245 (9%)

Query: 1   QDRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATL-CIRQGDFTD 59
           +DR S L D++L  ILS L T+  +AT +LS RWR + T L  L FD+    +   D  D
Sbjct: 12  EDRISDLPDALLLQILSSLPTENAIATSVLSKRWRSLWTMLPKLKFDSNFNPVFDDDNID 71

Query: 60  ATMERFEMSK-LYLH------SYRVSGSGR-----FKGWVSLAVMRDVRELELN--IENQ 105
            TM    + K L LH      S  +S  GR        W++ A  R VR+L L+   +  
Sbjct: 72  PTMFSENVYKTLSLHKAPVLESLHLSFEGRTDCLHVGIWIATAFARGVRKLVLDSFYQED 131

Query: 106 QRLELPESIYSCR-SLEVLKLDYDFDIAVPVSGMCFPNLKFLRVS-LQYPENQLTEKLFS 163
           Q + LP  ++S   SLE+LKL    D+  P S +C  +L+ L +  + + + +    L  
Sbjct: 132 QTVTLPSVLFSYNDSLEILKLKCAIDLDFP-SRVCLKSLRKLYLDQVHFKDEESVCNLLC 190

Query: 164 SCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLL 223
            CPS+++L +  Y   D     F I+S +L+R     L  +  +   ++    +I AP L
Sbjct: 191 GCPSLQDLVVHRYSNAD--VATFTIASPSLQRLTIEDLRQEGGYGNGSY----VINAPGL 244

Query: 224 QLLHV 228
           + L++
Sbjct: 245 KYLNI 249

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PFK0|FBL32_ARATH F-box/LRR-repeat protein At1g55660 OS=Arabidopsis thaliana GN=At1g55660 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 25/193 (12%)

Query: 2   DRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQGDFTDAT 61
           D+ S L D +L  +LSFL+TK  V+T ILS RW+ +   L  L ++     R    ++  
Sbjct: 53  DKISQLPDELLVKVLSFLSTKDAVSTSILSMRWKSLWMWLPKLEYN----FRHYSVSEGQ 108

Query: 62  -MERFEMSKLYLH----------SYRVSGSGRFKG-----WVSLAV-MRDVRELELNIEN 104
            + RF  S L +H           +R    G  K      WVSLAV + +VREL L + N
Sbjct: 109 GLARFITSSLRVHKAPAIESLSLKFRYGAIGSIKPKDIYLWVSLAVHVSNVRELSLKLFN 168

Query: 105 QQRL--ELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRVS-LQYPENQLTEKL 161
              L  +LP+S+  C+S+ +LKL  +  + VP   +C P+LK L +  + Y +     +L
Sbjct: 169 FAELPTKLPKSLCKCKSIVILKLKDEILVDVP-RKVCLPSLKTLFLGRVTYSDANSLHRL 227

Query: 162 FSSCPSIEELCLK 174
            S+CP +E+L ++
Sbjct: 228 LSNCPVLEDLVME 240

Arabidopsis thaliana (taxid: 3702)

>sp|Q9T0F1|FB226_ARATH F-box protein At4g09920 OS=Arabidopsis thaliana GN=At4g09920 PE=4 SV=2

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 95/185 (51%), Gaps = 19/185 (10%)

Query: 2   DRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQGDFTDAT 61
           DR   L D VL  ILSF+ TK+ V+T ILS RW  +   L  L F +    R  +     
Sbjct: 2   DRIIGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKFGSK---RYSESEFKR 58

Query: 62  MERFEMSKLYLHSYRVSGSGRF------------KGWVSLAVMRDVRELELNIEN--QQR 107
           ++ F    L LH   V  S R             + WV +AV R +REL++   +  +++
Sbjct: 59  LQCFLDRNLPLHRAPVIESFRLVLSDSHFKPEDIRMWVVVAVSRYIRELKIYSSHYGEKQ 118

Query: 108 LELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCP 166
             LP S+Y+C+SL +LKLD    + VP   +C P+LK L +  ++Y +    ++L  +CP
Sbjct: 119 NILPSSLYTCKSLVILKLDGGVLLDVP-RMVCLPSLKTLELKGVRYFKQGSLQRLLCNCP 177

Query: 167 SIEEL 171
            +E+L
Sbjct: 178 VLEDL 182

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQM1|FBD39_ARATH Probable FBD-associated F-box protein At1g32375 OS=Arabidopsis thaliana GN=At1g32375 PE=4 SV=2

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 122/248 (49%), Gaps = 31/248 (12%)

Query: 2   DRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATL-CIRQGDFTDA 60
           D+ S L +++L  ILS L+ K  V+T +LS RW+ +   +  L++D +   I  G F+  
Sbjct: 2   DKLSQLPEALLVRILSLLSAKDVVSTMVLSKRWQFLWMLVPKLIYDDSYQAIEYGSFS-- 59

Query: 61  TMERFEMSKLYLHSYRV------------SGSGRFKGWVSLAVMRDVRELELNIE----N 104
              RF      LH  +V             G+G  + W+  A    +REL + I+    +
Sbjct: 60  ---RFVDRSFTLHDAQVLDTLHFKLGKTSCGTGDIRVWIKTAEKSCLRELIIEIDKSNSD 116

Query: 105 QQRLELPESIYS-CRSLEVLKLDYDFDIAVPVSGMCFPNLKFLR-VSLQYPENQLTEKLF 162
              + LP S+Y+ CR L  LKL+ +  +    S   FP+LK L  VS+++P ++L + L 
Sbjct: 117 NSSVVLPRSLYTCCRMLVTLKLN-NAVLVDATSSFSFPSLKTLSLVSMKFPGDELIKMLL 175

Query: 163 SSCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPL 222
           S+CP +E+L +K    YD   T F +  S+LK     +++ +   A  N     +I  P 
Sbjct: 176 SNCPVLEDLVVK-RCPYDN-VTTFTVRVSSLK----CLVLHETELASINADCGFVIDTPS 229

Query: 223 LQLLHVVD 230
           L+ L + D
Sbjct: 230 LECLDIED 237

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJC1|FBD31_ARATH Putative FBD-associated F-box protein At5g53635 OS=Arabidopsis thaliana GN=At5g53635 PE=4 SV=1

 Score = 74.3 bits (181), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 120/261 (45%), Gaps = 21/261 (8%)

Query: 5   SSLLDSVLCNILSFLTTKIDVATCILSSRWRHV-----CTSLQTLLF-DATLCIRQGD-- 56
           S L D ++C+ILS L  K  V T +LS+RWR +     C  L +L F D    +  GD  
Sbjct: 3   SQLPDPLICHILSHLPIKDLVTTRVLSTRWRSLWLWLPCLELNSLYFPDFNAFVSFGDKF 62

Query: 57  FTDATMERFEMSKLYLHSYRVS--GSGRFKGWVSLAVMRDVRELELN-IENQQRLELPES 113
           F    +      KLY++ Y V          W+  AV   ++ L +  +  +   E+P S
Sbjct: 63  FDSNRVSCINKFKLYIYGYDVGVDDPSYLTSWIDAAVKCKIQHLHVQCLPAKYIYEMPLS 122

Query: 114 IYSCRSLEVLKL-DYDFDIAVPVSGMCFPNLKFLRVSLQYPENQLTEKLFSSCPSIEELC 172
           +Y C +L  LKL     D A  VS  C   +    V   +P     E+  S CP +EE  
Sbjct: 123 LYICETLVYLKLCRVMLDDAEFVSLPCLKTIHLEYV--WFPNEANLERFVSCCPVLEE-- 178

Query: 173 LKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDL 232
           LK+Y   +  A    + S +LK+    +L      +  +FH   +I APLL  L + D++
Sbjct: 179 LKIYGCGNENAITLRLLSRSLKKLSINILK-----SMCDFHSEVVIDAPLLSYLKINDNV 233

Query: 233 MVSYEVHDLQFLQTVNLAILF 253
              Y V++L+    +++++ F
Sbjct: 234 SERYIVNNLESNAKLDISLPF 254

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
147812093	607	hypothetical protein VITISV_040899 [Viti	0.839	0.397	0.305	3e-19
42565838	455	F-box/FBD/LRR-repeat protein [Arabidopsi	0.749	0.472	0.325	9e-15
224114976	462	predicted protein [Populus trichocarpa]	0.780	0.484	0.325	3e-14
226504616	419	ribosomal RNA apurinic site specific lya	0.686	0.470	0.322	5e-14
297819758	426	F-box family protein [Arabidopsis lyrata	0.770	0.518	0.297	7e-13
4538969	326	putative protein [Arabidopsis thaliana]	0.585	0.515	0.336	2e-12
296086764	348	unnamed protein product [Vitis vinifera]	0.811	0.669	0.295	2e-12
15229834	427	putative FBD-associated F-box protein [A	0.770	0.517	0.289	2e-12
15219959	449	F-box/RNI-like/FBD-like domains-containi	0.818	0.523	0.270	3e-12
15241216	430	FBD-associated F-box protein [Arabidopsi	0.668	0.446	0.310	3e-12

>gi|147812093|emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera]

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 132/262 (50%), Gaps = 21/262 (8%)

Query: 1   QDRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQG----- 55
           +D  S+L D +LC+ILSFL TK  V T ILS RWR++  S+  L FD  L +        
Sbjct: 9   RDIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNPSTLVEL 68

Query: 56  --------DFTDATMERFEMS--KLYLHSYRVSGSGRFKGWVSLAVMRDVRELELNIENQ 105
                   +F D  +   E+S  K +   YR +       W+ +A+ R V+EL+L++   
Sbjct: 69  EERIIMFQNFVDGVLRHSEVSCIKKFRLGYRDNNLDSVYSWICIALERRVQELDLHLLID 128

Query: 106 QRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSS 164
            R+ELP   + C++L V+KL     + +P + +  P+LK L + S++Y ++   +KL S 
Sbjct: 129 WRVELPPMFFICKTLVVVKLSCALFLDIPTT-VWLPSLKALHLKSVEYSDDDSIQKLLSG 187

Query: 165 CPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAF--NNFHHNCLIMAPL 222
           CP +EEL ++   + +    N  +S+ +LK        D +   +   +  +  ++ AP 
Sbjct: 188 CPVLEELVIEREERDNQWVVN--VSNPSLKILRIFFFTDGFAHPYEQEDQDYKVVVDAPN 245

Query: 223 LQLLHVVDDLMVSYEVHDLQFL 244
           L+ L + D L   Y V DL  L
Sbjct: 246 LEYLSITDYLSKDYFVKDLPSL 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565838|ref|NP_190721.3| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana] gi|75276325|sp|Q501E9.1|FDL20_ARATH RecName: Full=F-box/FBD/LRR-repeat protein At3g51530 gi|63003802|gb|AAY25430.1| At3g51530 [Arabidopsis thaliana] gi|110739329|dbj|BAF01577.1| hypothetical protein [Arabidopsis thaliana] gi|115646881|gb|ABJ17151.1| At3g51530 [Arabidopsis thaliana] gi|332645282|gb|AEE78803.1| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana]

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 122/240 (50%), Gaps = 25/240 (10%)

Query: 1   QDRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQGDFTD- 59
           +DR S L + +L  ILS L TK+ ++T +LS RW  +   +Q L F+++  I   DF + 
Sbjct: 29  EDRISELPEVLLLQILSSLPTKLVISTSVLSKRWLSLWKMVQRLEFESSRNIY--DFAEN 86

Query: 60  ATMERFEMSKLYLHSYRVSGSGRFKG-----WVSLAVMRDVRE--LELNIENQQRLELPE 112
            T          L S  +    +F G     W ++A  R VRE  L+L+  +  R+  P 
Sbjct: 87  VTRSLLSHKAPVLESLHLKVGDQFDGVYVGVWATIAFTRHVREFVLDLSSYHGPRVRFPT 146

Query: 113 SIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLR----VSLQYPENQLTEKLFSSCPSI 168
           S++   +LE LKLDY + I VP    C  ++K LR    +S+ Y  ++    LF+SCP++
Sbjct: 147 SLFCFDTLETLKLDYVY-IYVP----CPVSMKSLRTLHLLSVVYKGDESGHNLFASCPNL 201

Query: 169 EELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHV 228
           E L L+    +D    NFII + +LK    T+L+ D  F+        +I AP L+ L +
Sbjct: 202 EHLVLRRGFFFDA-VVNFIIDAPSLK----TLLLSD-PFSARESSRGYVIKAPSLKYLGI 255

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114976|ref|XP_002316907.1| predicted protein [Populus trichocarpa] gi|222859972|gb|EEE97519.1| predicted protein [Populus trichocarpa]

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/267 (32%), Positives = 131/267 (49%), Gaps = 43/267 (16%)

Query: 1   QDRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQ---GDF 57
           +D  S L + ++ +ILSFL TK  + TCILS  WR +  SL    FD      +   G+F
Sbjct: 15  KDMISDLPNVIIGHILSFLPTKDALCTCILSKSWRELWRSLSNFDFDDRTWKSKIIFGNF 74

Query: 58  TDATMERFEMSKLYLHS----------YRVSGS---GRFKGWVSLAVMRDVRELELNIEN 104
               M+RF     YLH+           RV+GS    R   W+S A+  ++ EL+L I  
Sbjct: 75  ----MDRF----CYLHNSRENSITKFRLRVNGSYPSSRMSAWISAAIKDNLEELKLWIYT 126

Query: 105 QQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRVSLQYP---ENQLTEKL 161
              + LP  I+SC  L +L L Y  DI +   G+ FP LK L +  + P   ++   EKL
Sbjct: 127 ADHVPLPRRIFSCEKLVILDLGYRIDIDLLGVGVHFPCLKVLHLQ-ELPMLDDHASIEKL 185

Query: 162 FSSCPSIEELCLKVYLKYDGPATNFI-ISSSTLKRFYWTVLVDDYNF-AFNNFHHNC--- 216
            +  P +EEL ++     D  + N + I SS+LKR     L+  + F A++     C   
Sbjct: 186 LAGSPVLEELKIE---HEDCESRNVLRICSSSLKR-----LIIRFPFVAYDEKDPGCREL 237

Query: 217 LIMAPLLQLLHVVDDLMVSYEVHDLQF 243
            +  P L+LL + D  +VS +++ LQ 
Sbjct: 238 TLDTPNLELLKLTD--LVSEKLNMLQI 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226504616|ref|NP_001147018.1| ribosomal RNA apurinic site specific lyase [Zea mays] gi|195606500|gb|ACG25080.1| ribosomal RNA apurinic site specific lyase [Zea mays]

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 113/217 (52%), Gaps = 20/217 (9%)

Query: 2   DRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLF----DATLCIRQGDF 57
           D  S L D +L  ILS + TK+ V+T ILS RW+ +  SL  L F    ++ L ++    
Sbjct: 2   DNLSRLPDELLVRILSLVPTKVVVSTSILSKRWKFLWMSLPKLEFVDRDESLLVLKNFVN 61

Query: 58  TDATMERFEMSKLYLHSYRVSGSGRFKG-----WVSLAVMRDVRELELNIENQQRLEL-P 111
            +  + R  + + +L S   S     K      WV +AV R +REL+++  +  +  + P
Sbjct: 62  KNLPLHRAPVIQSFLLSLYESREKNIKPEDIRQWVEIAVSRHLRELDVSYSSDNKENMVP 121

Query: 112 ESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRVSLQYPENQLT-EKLFSSCPSIEE 170
            S+++C+SL VLKL +   + VP S  C P+LK L + L   E+Q   E L S CP +E+
Sbjct: 122 NSLFACKSLVVLKLRFLTLMDVP-STACLPSLKTLLLELVVYEDQKPFEALLSICPVLED 180

Query: 171 LCLKVYLKYDGPATNFIISSSTLKR------FYWTVL 201
             L+V+ + D     F I+  +L++      +YW+ L
Sbjct: 181 --LEVWFREDESIQEFTINVPSLRKLCLHVSYYWSSL 215

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819758|ref|XP_002877762.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297323600|gb|EFH54021.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 118/245 (48%), Gaps = 24/245 (9%)

Query: 2   DRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCI------RQG 55
           DR S+L D +L  I S L TK  V T +LS RW+ + T +  L FD    +      R  
Sbjct: 2   DRISNLSDDLLLKIFSSLPTKDVVVTMLLSKRWKFLWTMVPKLRFDDEFELDPSYYGRFL 61

Query: 56  DFTDATMERFEMSKLYLHSYRVS---GSGRFKGWVSLAVMRDVRELELN-----IENQQR 107
            + D +M       L    + V     S     W+ + ++R +RELE++         + 
Sbjct: 62  KYVDKSMVLNRAQVLETVKFDVGPCCSSEDIATWIRIGMVRHMRELEISHCEAYFREHRS 121

Query: 108 LELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLR-VSLQYPENQLTEKLFSSCP 166
           ++LP+S+Y+   LEVLKL     + VP+  +CFP+LK L  V ++Y   +   +L S CP
Sbjct: 122 IKLPKSLYTYEKLEVLKLASTVVLNVPI-AVCFPSLKSLHLVCVEYKTKKSHRRLLSGCP 180

Query: 167 SIEELCL-KVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQL 225
            +E+L L K Y  +     +F +   TL+R     ++D     + +F    ++ AP L+ 
Sbjct: 181 VLEDLVLDKSYNSFH--VRSFYVEIPTLQRL---SILDTSGELYGDF--TFVVNAPSLKY 233

Query: 226 LHVVD 230
            + VD
Sbjct: 234 FNFVD 238

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4538969|emb|CAB39793.1| putative protein [Arabidopsis thaliana] gi|7267737|emb|CAB78163.1| putative protein [Arabidopsis thaliana]

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 2   DRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQGDFTDAT 61
           DR S L D VL  ILSF+ TK+ V+T ILS RW  +   L  L F +    R  +     
Sbjct: 2   DRISGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKFGSK---RYSESEFKR 58

Query: 62  MERFEMSKLYLHSYRVSGSGRF------------KGWVSLAVMRDVRELELNIEN--QQR 107
           ++ F    L LH   V  S R             + WV +AV R +REL++   +  +++
Sbjct: 59  LQCFLDRNLPLHRAPVIESFRLVLSDSHFKPEDIRMWVVVAVSRYIRELKIYSSHYGEKQ 118

Query: 108 LELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCP 166
             LP S+Y+C+SL +LKLD    + VP   +C P+LK L +  ++Y +    ++L  +CP
Sbjct: 119 NILPSSLYTCKSLVILKLDGGVLLDVP-RMVCLPSLKTLELKGVRYFKQGSLQRLLCNCP 177

Query: 167 SIEELCL 173
            +E+L +
Sbjct: 178 VLEDLVV 184

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086764|emb|CBI32913.3| unnamed protein product [Vitis vinifera]

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 123/247 (49%), Gaps = 14/247 (5%)

Query: 1   QDRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQGDFTDA 60
           +D  S+L D +LC+ILSFL TK  V T ILS RWR++  S+  L FD  L +       +
Sbjct: 9   RDIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNP-----S 63

Query: 61  TMERFEMSKLYLHSYRVSGSGRFKGWVSLAVMRDVRELELNIENQQRLELPESIYSCRSL 120
           T+   E   +   ++ V G  R      +   R +   + N++N   +ELP   + C++L
Sbjct: 64  TLVELEERIIMFQNF-VDGVLRHSEVSCIKKFR-LGYRDNNLDNWG-VELPPMFFICKTL 120

Query: 121 EVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKY 179
            V+KL     + +P + +  P+LK L + S++Y ++   +KL S CP +EEL ++   + 
Sbjct: 121 VVVKLSCALFLDIPTT-VWLPSLKALHLKSVEYSDDDSIQKLLSGCPVLEELVIEREERD 179

Query: 180 DGPATNFIISSSTLKRFYWTVLVDDYNFAF--NNFHHNCLIMAPLLQLLHVVDDLMVSYE 237
           +    N  +S+ +LK        D +   +   +  +  ++ AP L+ L + D L   Y 
Sbjct: 180 NQWVVN--VSNPSLKILRIFFFTDGFAHPYEQEDQDYKVVVDAPNLEYLSITDYLSKDYF 237

Query: 238 VHDLQFL 244
           V DL  L
Sbjct: 238 VKDLPSL 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229834|ref|NP_190640.1| putative FBD-associated F-box protein [Arabidopsis thaliana] gi|75265626|sp|Q9SCQ5.1|FBD10_ARATH RecName: Full=Putative FBD-associated F-box protein At3g50710 gi|6561974|emb|CAB62440.1| putative protein [Arabidopsis thaliana] gi|332645179|gb|AEE78700.1| putative FBD-associated F-box protein [Arabidopsis thaliana]

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 117/245 (47%), Gaps = 24/245 (9%)

Query: 2   DRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQG------ 55
           DR S+L D +L  I+S L TK  V T +LS RW+ +   +  L FD    +         
Sbjct: 2   DRISNLSDDLLLKIVSSLPTKDVVVTMLLSKRWKFLWMMVPKLRFDDEFELEPSYYGRFL 61

Query: 56  DFTDATMERFEMSKLYLHSYRVS---GSGRFKGWVSLAVMRDVRELELN-----IENQQR 107
            + D +M       L    + V     S     W+ + ++R++RELE++         + 
Sbjct: 62  KYVDKSMVLNRAQVLETVKFNVGPCCSSEDIATWIRIGMVRNMRELEISHCEGYFREHRS 121

Query: 108 LELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLR-VSLQYPENQLTEKLFSSCP 166
           ++LP+S+Y+   LEVLKL     + VP+  +CFP+LK L  V ++Y   +   +L S CP
Sbjct: 122 IKLPKSLYTYEKLEVLKLASTVVLNVPID-VCFPSLKSLHLVCVEYKTKKSHRRLLSGCP 180

Query: 167 SIEELCL-KVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQL 225
            +EEL L K Y  +     +F +   TL+      ++D     + +F    ++ AP L+ 
Sbjct: 181 VLEELVLDKSYNSFH--VRSFYVEIPTLQSL---SILDTSGELYGDF--TFVVNAPALKY 233

Query: 226 LHVVD 230
            + VD
Sbjct: 234 FNFVD 238

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219959|ref|NP_173137.1| F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana] gi|75263252|sp|Q9FZ52.1|FDL3_ARATH RecName: Full=F-box/FBD/LRR-repeat protein At1g16930 gi|9802769|gb|AAF99838.1|AC051629_5 Hypothetical protein [Arabidopsis thaliana] gi|332191402|gb|AEE29523.1| F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 129/270 (47%), Gaps = 35/270 (12%)

Query: 2   DRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQ------- 54
           DR S+L DS+LC ILS L+TK  V T +LS RWR++   +  L  D+             
Sbjct: 15  DRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDLDSNNFPDDDVFVSFV 74

Query: 55  ----GDFTDATMERFEMSKLYLHSYRVSGSGRFKGWVSLAVMRDVRELELNIENQ----- 105
               G   +  +ERF++    ++      + RFK W++  + R  R    N+ N+     
Sbjct: 75  NRFLGSENEQHLERFKL----IYEVNEHDASRFKSWINAVIKR--RVCHFNVHNEVDDDD 128

Query: 106 QRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRVSL-QYPENQLTEKLFSS 164
           + +++P S+YSC  L  L+L Y   +  P S +  P +K + + + +Y  +   E L S 
Sbjct: 129 ELVKMPLSLYSCERLVNLQL-YRVALDHPES-VSLPCVKIMHLDMVKYDADSTLEILISG 186

Query: 165 CPSIEELCLKVYLKYDGPATNFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLL 223
           CP +EEL +   ++    +   + + S +LK F     +D   +   N  H   I AP L
Sbjct: 187 CPVLEELTI---VRDPNDSLEVVCVRSQSLKSFK----IDSERYESQN--HVVTIDAPRL 237

Query: 224 QLLHVVDDLMVSYEVHDLQFLQTVNLAILF 253
           + +++ D    S+ +H++     V++ ++F
Sbjct: 238 EYMNLCDHRSDSFIIHNIGPFAKVDIDVIF 267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241216|ref|NP_200455.1| FBD-associated F-box protein [Arabidopsis thaliana] gi|75262697|sp|Q9FM87.1|FBD26_ARATH RecName: Full=Putative FBD-associated F-box protein At5g56440 gi|10177843|dbj|BAB11272.1| unnamed protein product [Arabidopsis thaliana] gi|332009382|gb|AED96765.1| FBD-associated F-box protein [Arabidopsis thaliana]

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 14/206 (6%)

Query: 2   DRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLF-DATLC----IRQGD 56
           DR S L D V+  ILSF+ TK+ V+T +LS RWR++   +  L + D +L      R   
Sbjct: 2   DRISLLPDDVVFKILSFVPTKVVVSTNLLSKRWRYLWKHVPKLDYRDPSLVDTEHWRASR 61

Query: 57  FTDATM---ERFEMSKLYLHSYRVSGSGRFKGWVSLAVMRDVRELEL--NIENQQRLELP 111
           F D  +   E   +  L+L   R       + W+S+A+ R VR L +   I +   + LP
Sbjct: 62  FVDKFLLLHEAPVLETLHLSLSRNCPPSDIETWISVAISRRVRNLHIYRYIPSTGPIRLP 121

Query: 112 ESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRVSL-QYPENQLTEKLFSSCPSIEE 170
            S+Y+C +L  L L  DF +       CF +LK L +   ++  +++  +L S CP +E 
Sbjct: 122 RSLYTCETLVSLYLLLDFTVDDAPFMFCFRSLKVLVLLFAKFSSDEIVNRLLSGCPVLEG 181

Query: 171 LCLKVYLKYDGPATNFIISSSTLKRF 196
           L L   ++ +    NF I++ +L+R 
Sbjct: 182 LIL---IRRNDNVKNFTIAAPSLQRL 204

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
TAIR|locus:2081880	455	AT3G51530 "AT3G51530" [Arabido	0.759	0.479	0.316	8.1e-19
TAIR|locus:2101674	427	AT3G50710 "AT3G50710" [Arabido	0.926	0.622	0.285	6.4e-18
TAIR|locus:2015681	449	AT1G16930 "AT1G16930" [Arabido	0.836	0.534	0.283	1.3e-17
TAIR|locus:505006162	422	AT1G32375 "AT1G32375" [Arabido	0.773	0.526	0.296	2.2e-17
TAIR|locus:2055993	448	AT2G04230 "AT2G04230" [Arabido	0.770	0.493	0.322	9.4e-17
TAIR|locus:2145279	481	AT5G25850 "AT5G25850" [Arabido	0.797	0.476	0.298	4.8e-16
TAIR|locus:2140538	316	AT4G09920 "AT4G09920" [Arabido	0.655	0.594	0.334	5.4e-16
TAIR|locus:2122754	409	AT4G10400 "AT4G10400" [Arabido	0.592	0.415	0.343	5.9e-16
TAIR|locus:2161073	430	AT5G56440 "AT5G56440" [Arabido	0.665	0.444	0.312	2.3e-15
TAIR|locus:2161053	422	AT5G56420 "AT5G56420" [Arabido	0.770	0.523	0.288	7.7e-15

TAIR|locus:2081880 AT3G51530 "AT3G51530" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 8.1e-19, P = 8.1e-19
 Identities = 75/237 (31%), Positives = 117/237 (49%)

Query:     1 QDRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQGDFTD- 59
             +DR S L + +L  ILS L TK+ ++T +LS RW  +   +Q L F+++  I   DF + 
Sbjct:    29 EDRISELPEVLLLQILSSLPTKLVISTSVLSKRWLSLWKMVQRLEFESSRNIY--DFAEN 86

Query:    60 ATMERFEMSKLYLHSYRVSGSGRFKG-----WVSLAVMRDVRELELNIENQQ--RLELPE 112
              T          L S  +    +F G     W ++A  R VRE  L++ +    R+  P 
Sbjct:    87 VTRSLLSHKAPVLESLHLKVGDQFDGVYVGVWATIAFTRHVREFVLDLSSYHGPRVRFPT 146

Query:   113 SIYSCRSLEVLKLDYDFD-IAVPVSGMCFPNLKFLRVSLQYPENQLTEKLFSSCPSIEEL 171
             S++   +LE LKLDY +  +  PVS      L  L  S+ Y  ++    LF+SCP++E L
Sbjct:   147 SLFCFDTLETLKLDYVYIYVPCPVSMKSLRTLHLL--SVVYKGDESGHNLFASCPNLEHL 204

Query:   172 CLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHV 228
              L+    +D    NFII + +LK    T+L+ D  F+        +I AP L+ L +
Sbjct:   205 VLRRGFFFDA-VVNFIIDAPSLK----TLLLSD-PFSARESSRGYVIKAPSLKYLGI 255

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2101674 AT3G50710 "AT3G50710" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 6.4e-18, P = 6.4e-18
 Identities = 85/298 (28%), Positives = 143/298 (47%)

Query:     2 DRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQ---GDF- 57
             DR S+L D +L  I+S L TK  V T +LS RW+ +   +  L FD    +     G F 
Sbjct:     2 DRISNLSDDLLLKIVSSLPTKDVVVTMLLSKRWKFLWMMVPKLRFDDEFELEPSYYGRFL 61

Query:    58 --TDATMERFEMSKLYLHSYRVS---GSGRFKGWVSLAVMRDVRELELN-----IENQQR 107
                D +M       L    + V     S     W+ + ++R++RELE++         + 
Sbjct:    62 KYVDKSMVLNRAQVLETVKFNVGPCCSSEDIATWIRIGMVRNMRELEISHCEGYFREHRS 121

Query:   108 LELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLR-VSLQYPENQLTEKLFSSCP 166
             ++LP+S+Y+   LEVLKL     + VP+  +CFP+LK L  V ++Y   +   +L S CP
Sbjct:   122 IKLPKSLYTYEKLEVLKLASTVVLNVPID-VCFPSLKSLHLVCVEYKTKKSHRRLLSGCP 180

Query:   167 SIEELCL-KVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQL 225
              +EEL L K Y  +     +F +   TL+      ++D     + +F    ++ AP L+ 
Sbjct:   181 VLEELVLDKSYNSFH--VRSFYVEIPTLQSLS---ILDTSGELYGDF--TFVVNAPALKY 233

Query:   226 LHVVD---DLMVSYEVHDLQFLQTVNLAILFLQ-WSVLNPWEVVQLLNGILNCKSLTL 279
              + VD   DL +   + ++     VN+ +++     +L P + V+ L+  L+  S TL
Sbjct:   234 FNFVDFYGDLCLRDNMPEVV---DVNIKVIYRNPKKLLGPLKSVKRLSLCLS-PSTTL 287

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015681 AT1G16930 "AT1G16930" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 75/265 (28%), Positives = 130/265 (49%)

Query:     2 DRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQGDFTDAT 61
             DR S+L DS+LC ILS L+TK  V T +LS RWR++   +  L  D+       D   + 
Sbjct:    15 DRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDLDSNN-FPDDDVFVSF 73

Query:    62 MERFEMSKLYLHS------YRVS--GSGRFKGWVSLAVMRDVRELELNIE---NQQRLEL 110
             + RF  S+   H       Y V+   + RFK W++  + R V    ++ E   + + +++
Sbjct:    74 VNRFLGSENEQHLERFKLIYEVNEHDASRFKSWINAVIKRRVCHFNVHNEVDDDDELVKM 133

Query:   111 PESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRVSL-QYPENQLTEKLFSSCPSIE 169
             P S+YSC  L  L+L Y   +  P S +  P +K + + + +Y  +   E L S CP +E
Sbjct:   134 PLSLYSCERLVNLQL-YRVALDHPES-VSLPCVKIMHLDMVKYDADSTLEILISGCPVLE 191

Query:   170 ELCLKVYLKYDGPATNFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHV 228
             EL +   ++    +   + + S +LK F     +D   +   N  H   I AP L+ +++
Sbjct:   192 ELTI---VRDPNDSLEVVCVRSQSLKSFK----IDSERYESQN--HVVTIDAPRLEYMNL 242

Query:   229 VDDLMVSYEVHDLQFLQTVNLAILF 253
              D    S+ +H++     V++ ++F
Sbjct:   243 CDHRSDSFIIHNIGPFAKVDIDVIF 267

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006162 AT1G32375 "AT1G32375" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 2.2e-17, P = 2.2e-17
 Identities = 72/243 (29%), Positives = 122/243 (50%)

Query:     2 DRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATL-CIRQGDFTDA 60
             D+ S L +++L  ILS L+ K  V+T +LS RW+ +   +  L++D +   I  G F+  
Sbjct:     2 DKLSQLPEALLVRILSLLSAKDVVSTMVLSKRWQFLWMLVPKLIYDDSYQAIEYGSFSRF 61

Query:    61 TMERFEM------SKLYLHSYRVS-GSGRFKGWVSLAVMRDVRELELNIE----NQQRLE 109
                 F +        L+    + S G+G  + W+  A    +REL + I+    +   + 
Sbjct:    62 VDRSFTLHDAQVLDTLHFKLGKTSCGTGDIRVWIKTAEKSCLRELIIEIDKSNSDNSSVV 121

Query:   110 LPESIYSC-RSLEVLKLDYDFDIAVPVSGMCFPNLKFLR-VSLQYPENQLTEKLFSSCPS 167
             LP S+Y+C R L  LKL+ +  +    S   FP+LK L  VS+++P ++L + L S+CP 
Sbjct:   122 LPRSLYTCCRMLVTLKLN-NAVLVDATSSFSFPSLKTLSLVSMKFPGDELIKMLLSNCPV 180

Query:   168 IEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLH 227
             +E+L +K    YD   T F +  S+LK     +++ +   A  N     +I  P L+ L 
Sbjct:   181 LEDLVVK-RCPYDN-VTTFTVRVSSLK----CLVLHETELASINADCGFVIDTPSLECLD 234

Query:   228 VVD 230
             + D
Sbjct:   235 IED 237

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055993 AT2G04230 "AT2G04230" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 9.4e-17, P = 9.4e-17
 Identities = 79/245 (32%), Positives = 124/245 (50%)

Query:     1 QDRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLC-IRQGDFTD 59
             +DR S L D++L  ILS L T+  +AT +LS RWR + T L  L FD+    +   D  D
Sbjct:    12 EDRISDLPDALLLQILSSLPTENAIATSVLSKRWRSLWTMLPKLKFDSNFNPVFDDDNID 71

Query:    60 ATMERFEMSK-LYLH------SYRVSGSGRFK----G-WVSLAVMRDVRELELN--IENQ 105
              TM    + K L LH      S  +S  GR      G W++ A  R VR+L L+   +  
Sbjct:    72 PTMFSENVYKTLSLHKAPVLESLHLSFEGRTDCLHVGIWIATAFARGVRKLVLDSFYQED 131

Query:   106 QRLELPESIYSCR-SLEVLKLDYDFDIAVPVSGMCFPNLKFLRVS-LQYPENQLTEKLFS 163
             Q + LP  ++S   SLE+LKL    D+  P S +C  +L+ L +  + + + +    L  
Sbjct:   132 QTVTLPSVLFSYNDSLEILKLKCAIDLDFP-SRVCLKSLRKLYLDQVHFKDEESVCNLLC 190

Query:   164 SCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLL 223
              CPS+++L +  Y   D  AT F I+S +L+R    + ++D        + + +I AP L
Sbjct:   191 GCPSLQDLVVHRYSNAD-VAT-FTIASPSLQR----LTIEDLRQEGGYGNGSYVINAPGL 244

Query:   224 QLLHV 228
             + L++
Sbjct:   245 KYLNI 249

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2145279 AT5G25850 "AT5G25850" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 4.8e-16, P = 4.8e-16
 Identities = 75/251 (29%), Positives = 124/251 (49%)

Query:     2 DRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTL-----LFDATLCIRQ-G 55
             +R S L D ++C ILS L  K  V T +LS+RW+++  S+ +L     +F      R  G
Sbjct:    20 NRLSQLSDPLICQILSHLPIKEVVTTSVLSTRWKNIWLSVPSLELIYSIFPNFNTFRSFG 79

Query:    56 D-FTDAT-MERFEMSKLYLHSYRVSGSGRFKGWVSLAVMRDVRELELN-IENQQRLELPE 112
             D F D+T +      KLY   +          W++  V R++R L +  +      ELP 
Sbjct:    80 DRFFDSTRVSCIHNLKLYFDEHDAC---YLTSWINAFVTRNIRRLYVRRVRGNYFHELPL 136

Query:   113 SIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRVS-LQYPENQLTEKLFSSCPSIEEL 171
             S+Y C +L  LKL +   +  P   +  P LK + ++ + +P +   E+L SSCP +E+L
Sbjct:   137 SLYVCETLVSLKL-FHLTLVDP-EFVSLPCLKIMHLNYVWFPNDATFERLVSSCPVLEDL 194

Query:   172 CLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDD 231
              + V L  DG    + + S +LKR     L+      F++     +I APL+  L + D 
Sbjct:   195 KIDV-LWNDGRV--YRVKSRSLKRLR---LLRSSTMVFDSVP-GVVIDAPLICYLRINDR 247

Query:   232 LMVSYEVHDLQ 242
             +  +Y ++DL+
Sbjct:   248 VSETYILNDLE 258

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2140538 AT4G09920 "AT4G09920" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 5.4e-16, P = 5.4e-16
 Identities = 70/209 (33%), Positives = 109/209 (52%)

Query:     2 DRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQGDFTDAT 61
             DR   L D VL  ILSF+ TK+ V+T ILS RW  +   L  L F +    R  +     
Sbjct:     2 DRIIGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKFGSK---RYSESEFKR 58

Query:    62 MERFEMSKLYLH------SYR-VSGSGRFKG-----WVSLAVMRDVRELELNIEN--QQR 107
             ++ F    L LH      S+R V     FK      WV +AV R +REL++   +  +++
Sbjct:    59 LQCFLDRNLPLHRAPVIESFRLVLSDSHFKPEDIRMWVVVAVSRYIRELKIYSSHYGEKQ 118

Query:   108 LELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRVS-LQYPENQLTEKLFSSCP 166
               LP S+Y+C+SL +LKLD    + VP   +C P+LK L +  ++Y +    ++L  +CP
Sbjct:   119 NILPSSLYTCKSLVILKLDGGVLLDVPRM-VCLPSLKTLELKGVRYFKQGSLQRLLCNCP 177

Query:   167 SIEELCLKVYLKYDGPATNFIISSSTLKR 195
              +E+L + + L+ D     FI+   +L+R
Sbjct:   178 VLEDLFV-LLLRCDDIGM-FIVIVPSLQR 204

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122754 AT4G10400 "AT4G10400" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.9e-16, P = 5.9e-16
 Identities = 65/189 (34%), Positives = 100/189 (52%)

Query:     2 DRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQGDFTDAT 61
             DR S L D VL  ILSF+ TK+ V+T ILS RW  +   L  L F +    R  +     
Sbjct:     2 DRISGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKFGSK---RYSESEFKR 58

Query:    62 MERFEMSKLYLH------SYR-VSGSGRFKG-----WVSLAVMRDVRELELNIEN--QQR 107
             ++ F    L LH      S+R V     FK      WV +AV R +REL++   +  +++
Sbjct:    59 LQCFLDRNLPLHRAPVIESFRLVLSDSHFKPEDIRMWVVVAVSRYIRELKIYSSHYGEKQ 118

Query:   108 LELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRVS-LQYPENQLTEKLFSSCP 166
               LP S+Y+C+SL +LKLD    + VP   +C P+LK L +  ++Y +    ++L  +CP
Sbjct:   119 NILPSSLYTCKSLVILKLDGGVLLDVPRM-VCLPSLKTLELKGVRYFKQGSLQRLLCNCP 177

Query:   167 SIEELCLKV 175
              +E+L + +
Sbjct:   178 VLEDLVVNL 186

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161073 AT5G56440 "AT5G56440" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 64/205 (31%), Positives = 104/205 (50%)

Query:     2 DRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLF-DATLCI----RQGD 56
             DR S L D V+  ILSF+ TK+ V+T +LS RWR++   +  L + D +L      R   
Sbjct:     2 DRISLLPDDVVFKILSFVPTKVVVSTNLLSKRWRYLWKHVPKLDYRDPSLVDTEHWRASR 61

Query:    57 FTDATMERFE---MSKLYLHSYRVSGSGRFKGWVSLAVMRDVRELELN--IENQQRLELP 111
             F D  +   E   +  L+L   R       + W+S+A+ R VR L +   I +   + LP
Sbjct:    62 FVDKFLLLHEAPVLETLHLSLSRNCPPSDIETWISVAISRRVRNLHIYRYIPSTGPIRLP 121

Query:   112 ESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRVSL-QYPENQLTEKLFSSCPSIEE 170
              S+Y+C +L  L L  DF +       CF +LK L +   ++  +++  +L S CP +E 
Sbjct:   122 RSLYTCETLVSLYLLLDFTVDDAPFMFCFRSLKVLVLLFAKFSSDEIVNRLLSGCPVLEG 181

Query:   171 LCLKVYLKYDGPATNFIISSSTLKR 195
             L L   ++ +    NF I++ +L+R
Sbjct:   182 LIL---IRRNDNVKNFTIAAPSLQR 203

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2161053 AT5G56420 "AT5G56420" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 7.7e-15, P = 7.7e-15
 Identities = 70/243 (28%), Positives = 122/243 (50%)

Query:     1 QDRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATL----CIRQGD 56
             +DR S L D  L  ILS+L TK  + T +LS RWR + T +  L +D  L    C R   
Sbjct:     5 RDRLSQLPDDFLLQILSWLPTKDVLVTSLLSKRWRFLWTLVPRLNYDLRLHDNTCPRFSQ 64

Query:    57 FTDATMERFEMSKLYLHSYRVSGSGRFKG------WVSLAVMRDVRELELNI-ENQQRLE 109
             F D ++   +   L   + ++ GS  F        WV + V R VREL ++    ++ + 
Sbjct:    65 FVDRSLLLHKAPTLESLNIKI-GSICFTAEKDVGVWVRIGVDRFVRELSVSYCSGEEPIR 123

Query:   110 LPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSI 168
             LP+ +++C +L VLKL+ +  +      +CF +LK L +  ++Y ++Q   ++ SSC S+
Sbjct:   124 LPKCLFTCSTLAVLKLE-NITLEDASCYVCFQSLKTLHLLDVKYLDDQSLPRIISSCSSL 182

Query:   169 EELCLKVYLKYDGPATNFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLH 227
             E+L ++   +  G     + +++ +LK    T+ +   + AF       LI  P L+ + 
Sbjct:   183 EDLVVQ---RCPGDNVKVVTVTAPSLK----TLSLHKSSQAFEGDDDGFLIDTPKLKRVD 235

Query:   228 VVD 230
             + D
Sbjct:   236 IED 238

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00000972001 SubName- Full=Chromosome chr19 scaffold_111, whole genome shotgun sequence; (360 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	287
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.65
KOG4341	483	consensus F-box protein containing LRR [General fu	99.0
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.93
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.57
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.53
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.45
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.4
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.2
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.04
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.01
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.9
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.86
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.84
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.78
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.68
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	97.66
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.52
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.47
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.47
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.45
KOG4341	483	consensus F-box protein containing LRR [General fu	97.28
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.1
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.09
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.09
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.78
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.7
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.49
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.47
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.45
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.39
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.37
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.25
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.25
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.21
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.19
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	96.08
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.95
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.88
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	95.26
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.07
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	94.87
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.81
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.79
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	94.75
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.64
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.43
PLN03150	623	hypothetical protein; Provisional	94.41
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	94.03
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	93.89
PLN03150	623	hypothetical protein; Provisional	93.84
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	93.76
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.51
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	93.46
PRK15386	426	type III secretion protein GogB; Provisional	93.41
KOG0617	264	consensus Ras suppressor protein (contains leucine	92.86
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	92.65
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	91.54
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	90.66
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	90.26
PF13013	109	F-box-like_2: F-box-like domain	90.14
PRK15386	426	type III secretion protein GogB; Provisional	89.52
KOG0472	565	consensus Leucine-rich repeat protein [Function un	88.41
KOG0472	565	consensus Leucine-rich repeat protein [Function un	87.8
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	85.39
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	85.39
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	84.31
KOG3864	221	consensus Uncharacterized conserved protein [Funct	82.61
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	80.72
KOG2123	388	consensus Uncharacterized conserved protein [Funct	80.04

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=2.5e-18  Score=142.96  Aligned_cols=257  Identities=17%  Similarity=0.070  Sum_probs=134.9

Q ss_pred             CCCCchHHHHHHhcCCChhhhhhhccchhhhHhhhCCCc---eEEEecCCccCccCccchHHHHHHHH-hhhcccCC-Cc
Q 038991            4 NSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQ---TLLFDATLCIRQGDFTDATMERFEMS-KLYLHSYR-VS   78 (287)
Q Consensus         4 is~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~lw~~~~---~l~f~~~~~~~~~~f~~~~~~~~v~~-~l~~~~~~-~~   78 (287)
                      +..||||++..|||.|+.||+.+++.|||||+++-+.-.   .++..+....      .....+.+.+ ++..|-.. ..
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~------p~~l~~l~~rgV~v~Rlar~~~  171 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIH------PDVLGRLLSRGVIVFRLARSFM  171 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccC------hhHHHHHHhCCeEEEEcchhhh
Confidence            468999999999999999999999999999998744322   3333333221      1111222222 11111110 01


Q ss_pred             CCcchhhHHHHHHcCCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccc-cCCCcccCCCccEEEE-EEEeCCcc
Q 038991           79 GSGRFKGWVSLAVMRDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIA-VPVSGMCFPNLKFLRV-SLQYPENQ  156 (287)
Q Consensus        79 ~~~~~~~wl~~a~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L-~~~~~~~~  156 (287)
                      +..++..- ....+..++.+||+........+...+..|.+|+.|.|.|....+ +....+.-.+|+.|+| .+.-....
T Consensus       172 ~~prlae~-~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n  250 (419)
T KOG2120|consen  172 DQPRLAEH-FSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN  250 (419)
T ss_pred             cCchhhhh-hhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh
Confidence            11111110 112334677778776654444444455566667777776665543 1112234566677777 55444445


Q ss_pred             hHHHHHccCCccceEEeeeeeccCCCee--eEEEECCCcceEEEEEeeccccc------------------------ccc
Q 038991          157 LTEKLFSSCPSIEELCLKVYLKYDGPAT--NFIISSSTLKRFYWTVLVDDYNF------------------------AFN  210 (287)
Q Consensus       157 ~l~~l~~~cp~Le~L~l~~c~~~~~~~~--~l~i~~~~Lk~L~l~~~~~~~~~------------------------~~~  210 (287)
                      ++.-++++|..|.+|+|+.| ....+..  .+...+++|+.|++++|  ...+                        .+.
T Consensus       251 ~~~ll~~scs~L~~LNlsWc-~l~~~~Vtv~V~hise~l~~LNlsG~--rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~  327 (419)
T KOG2120|consen  251 ALQLLLSSCSRLDELNLSWC-FLFTEKVTVAVAHISETLTQLNLSGY--RRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK  327 (419)
T ss_pred             HHHHHHHhhhhHhhcCchHh-hccchhhhHHHhhhchhhhhhhhhhh--HhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence            56666677777777777766 2211011  11123455555555555  1110                        001


Q ss_pred             CCcccEEEEcCccEEEEEEecccc----ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceE
Q 038991          211 NFHHNCLIMAPLLQLLHVVDDLMV----SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKS  276 (287)
Q Consensus       211 ~~~~~~~i~ap~L~~L~l~~~~~~----~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~  276 (287)
                      .........-|.|++|.++-|..-    .+.+..+|+|..+++.++..+      ..+.-+...+++++.
T Consensus       328 ~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd------t~mel~~e~~~~lki  391 (419)
T KOG2120|consen  328 NDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD------TTMELLKEMLSHLKI  391 (419)
T ss_pred             chHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc------hHHHHHHHhCccccc
Confidence            001111223355555555555432    456677888888887776543      235566666776554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.00  E-value=3.8e-12  Score=110.65  Aligned_cols=142  Identities=19%  Similarity=0.179  Sum_probs=86.5

Q ss_pred             CCchHHHHHHhcCCChhhhhhhccchhhhHhh------hCCCceEEEecCCccCccCccchHHHHHHHHhhhcccCCCcC
Q 038991            6 SLLDSVLCNILSFLTTKIDVATCILSSRWRHV------CTSLQTLLFDATLCIRQGDFTDATMERFEMSKLYLHSYRVSG   79 (287)
Q Consensus         6 ~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~l------w~~~~~l~f~~~~~~~~~~f~~~~~~~~v~~~l~~~~~~~~~   79 (287)
                      .||.|++..|||+|+++.+.+++++|+.|..+      |..+...+|..+..   .++    +..++.+           
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~---g~V----V~~~~~R-----------  135 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVD---GGV----VENMISR-----------  135 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCC---Ccc----eehHhhh-----------
Confidence            59999999999999999999999999999985      33332222221111   111    1111111           


Q ss_pred             CcchhhHHHHHHcCCceEEEEEEecCc-cccCCCCCcCCCcccEEEeceeecccc---CCCcccCCCccEEEE-EEEeCC
Q 038991           80 SGRFKGWVSLAVMRDVRELELNIENQQ-RLELPESIYSCRSLEVLKLDYDFDIAV---PVSGMCFPNLKFLRV-SLQYPE  154 (287)
Q Consensus        80 ~~~~~~wl~~a~~~~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~~~~~---~~~~~~~~~L~~L~L-~~~~~~  154 (287)
                                +. ..+++|.+..+... ...+-.....|+++++|.+.+|...+-   -..+..|+.|+.|.| .|...+
T Consensus       136 ----------cg-g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT  204 (483)
T KOG4341|consen  136 ----------CG-GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT  204 (483)
T ss_pred             ----------hc-cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH
Confidence                      11 35666666555432 334444555667777777777764331   102236777777777 655555


Q ss_pred             cchHHHHHccCCccceEEeeee
Q 038991          155 NQLTEKLFSSCPSIEELCLKVY  176 (287)
Q Consensus       155 ~~~l~~l~~~cp~Le~L~l~~c  176 (287)
                      +..+..+..+||+|+.|+++.|
T Consensus       205 ~~~Lk~la~gC~kL~~lNlSwc  226 (483)
T KOG4341|consen  205 DVSLKYLAEGCRKLKYLNLSWC  226 (483)
T ss_pred             HHHHHHHHHhhhhHHHhhhccC
Confidence            5566667777777777777777

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.93  E-value=7.6e-10  Score=68.43  Aligned_cols=36  Identities=31%  Similarity=0.554  Sum_probs=31.7

Q ss_pred             CCCCchHHHHHHhcCCChhhhhhhccchhhhHhhhC
Q 038991            4 NSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCT   39 (287)
Q Consensus         4 is~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~lw~   39 (287)
                      |+.||+||+.+||++|+.+|.++++.|||+|+.+..
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~   36 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN   36 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence            678999999999999999999999999999998753

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.57  E-value=1.8e-08  Score=62.50  Aligned_cols=38  Identities=37%  Similarity=0.516  Sum_probs=31.8

Q ss_pred             CCCCchHHHHHHhcCCChhhhhhhccchhhhHhhhCCC
Q 038991            4 NSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSL   41 (287)
Q Consensus         4 is~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~lw~~~   41 (287)
                      +++||+|++.+||++|+.+|.++++.|||+|+.+....
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~   40 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP   40 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence            56899999999999999999999999999999986543

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.53  E-value=7.5e-08  Score=96.88  Aligned_cols=104  Identities=17%  Similarity=0.151  Sum_probs=48.5

Q ss_pred             CCceEEEEEEecCccccCCCCCc-CCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991           93 RDVRELELNIENQQRLELPESIY-SCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE  170 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~  170 (287)
                      +.++.|+|+.+.. ...+|..++ .+.+|++|+|+++.+.... ....+++|++|+| +..+.+  .+..-+..+++|+.
T Consensus        93 ~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~l~~L~~L~Ls~n~~~~--~~p~~~~~l~~L~~  168 (968)
T PLN00113         93 PYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSI-PRGSIPNLETLDLSNNMLSG--EIPNDIGSFSSLKV  168 (968)
T ss_pred             CCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCcccccc-CccccCCCCEEECcCCcccc--cCChHHhcCCCCCE
Confidence            4566666654332 123454444 5566666666666543211 1234566666666 554432  12222445566666


Q ss_pred             EEeeeeeccCCCeeeEEEECCCcceEEEEEe
Q 038991          171 LCLKVYLKYDGPATNFIISSSTLKRFYWTVL  201 (287)
Q Consensus       171 L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~  201 (287)
                      |++++| ...+.........++|+.|.+.+|
T Consensus       169 L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n  198 (968)
T PLN00113        169 LDLGGN-VLVGKIPNSLTNLTSLEFLTLASN  198 (968)
T ss_pred             EECccC-cccccCChhhhhCcCCCeeeccCC
Confidence            666655 332201111113345555555554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.45  E-value=1.5e-07  Score=94.65  Aligned_cols=81  Identities=19%  Similarity=0.158  Sum_probs=42.7

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccc-cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIA-VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE  170 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~  170 (287)
                      .++++|++..+.. ...+|..+...++|++|+|++|.+.. .|.....+++|+.|+| +..+.+  .+..-+..+++|++
T Consensus       164 ~~L~~L~L~~n~l-~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~  240 (968)
T PLN00113        164 SSLKVLDLGGNVL-VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG--EIPYEIGGLTSLNH  240 (968)
T ss_pred             CCCCEEECccCcc-cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC--cCChhHhcCCCCCE
Confidence            5777777765432 22445555566667777776665432 3323345566666666 554432  11222344555555


Q ss_pred             EEeeee
Q 038991          171 LCLKVY  176 (287)
Q Consensus       171 L~l~~c  176 (287)
                      |++.+|
T Consensus       241 L~L~~n  246 (968)
T PLN00113        241 LDLVYN  246 (968)
T ss_pred             EECcCc
Confidence            555555

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.40  E-value=1.9e-07  Score=55.66  Aligned_cols=34  Identities=38%  Similarity=0.430  Sum_probs=31.7

Q ss_pred             CchHHHHHHhcCCChhhhhhhccchhhhHhhhCC
Q 038991            7 LLDSVLCNILSFLTTKIDVATCILSSRWRHVCTS   40 (287)
Q Consensus         7 LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~lw~~   40 (287)
                      ||+|++.+||++++.+|+++++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999997643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=6.9e-08  Score=81.29  Aligned_cols=152  Identities=18%  Similarity=0.160  Sum_probs=104.7

Q ss_pred             HHHcCCceEEEEEEecCc-cccCCCCCcCCCcccEEEeceeeccc--cCC-CcccCCCccEEEE-EEE-eCCcchHHHHH
Q 038991           89 LAVMRDVRELELNIENQQ-RLELPESIYSCRSLEVLKLDYDFDIA--VPV-SGMCFPNLKFLRV-SLQ-YPENQLTEKLF  162 (287)
Q Consensus        89 ~a~~~~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~-~~~~~~~L~~L~L-~~~-~~~~~~l~~l~  162 (287)
                      .|..+++++++|+++..- ...+...+.+|+.|..|+|+.|...+  +.+ ...-=+.|++|+| +++ ......+.-+.
T Consensus       230 iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~  309 (419)
T KOG2120|consen  230 IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV  309 (419)
T ss_pred             HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH
Confidence            455679999999987642 44444556789999999999997654  111 1224589999999 763 33345688888


Q ss_pred             ccCCccceEEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEE-EcCccEEEEEEecccc---ceee
Q 038991          163 SSCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLI-MAPLLQLLHVVDDLMV---SYEV  238 (287)
Q Consensus       163 ~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i-~ap~L~~L~l~~~~~~---~~~~  238 (287)
                      ..||+|.+|+|++|....+..-....+.+.|++|.++.|++-     .. ..-+.+ .+|+|.+|++.|+..+   ....
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-----~p-~~~~~l~s~psl~yLdv~g~vsdt~mel~~  383 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-----IP-ETLLELNSKPSLVYLDVFGCVSDTTMELLK  383 (419)
T ss_pred             HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC-----Ch-HHeeeeccCcceEEEEeccccCchHHHHHH
Confidence            999999999999994333212222336799999999999421     11 223344 6899999999999776   2233


Q ss_pred             ecCCCcee
Q 038991          239 HDLQFLQT  246 (287)
Q Consensus       239 ~~~p~L~~  246 (287)
                      +.+|+|+-
T Consensus       384 e~~~~lki  391 (419)
T KOG2120|consen  384 EMLSHLKI  391 (419)
T ss_pred             HhCccccc
Confidence            45666543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.04  E-value=8.8e-07  Score=80.94  Aligned_cols=59  Identities=24%  Similarity=0.277  Sum_probs=34.1

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcc-cCCCccEEEE-EEEe
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGM-CFPNLKFLRV-SLQY  152 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~L-~~~~  152 (287)
                      .++++|+|..+..+..+.. .+.+..+|..|+|+.+....+|.... .+|.|+.|.| .-.+
T Consensus       173 ~ni~~L~La~N~It~l~~~-~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i  233 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETG-HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI  233 (873)
T ss_pred             CCceEEeeccccccccccc-cccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence            4677777776654333322 22334577777777776666553333 4777777777 4433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=3.8e-07  Score=80.45  Aligned_cols=154  Identities=18%  Similarity=0.114  Sum_probs=98.2

Q ss_pred             CCceEEEEEEecCc-cccCCCCCcCCCcccEEEeceeeccccCC--CcccCCCccEEEE-EEEeCCcchHHHHHccCCcc
Q 038991           93 RDVRELELNIENQQ-RLELPESIYSCRSLEVLKLDYDFDIAVPV--SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSI  168 (287)
Q Consensus        93 ~~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~L  168 (287)
                      .++++|+|+.+-.. ...+-..+...++|+.|+|+.+.+..+..  ....+++||+|.| +|.+.. .++..++..||+|
T Consensus       146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~-k~V~~~~~~fPsl  224 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSW-KDVQWILLTFPSL  224 (505)
T ss_pred             CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCH-HHHHHHHHhCCcH
Confidence            47777777655432 23333344456889999998887644321  2237899999999 999885 7899999999999


Q ss_pred             ceEEeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccccee---------e
Q 038991          169 EELCLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYE---------V  238 (287)
Q Consensus       169 e~L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~---------~  238 (287)
                      |.|.|... ..-. .....- ...+|+.|+++++. -.++  +  .....-..|.|.-|.++.+...++.         .
T Consensus       225 ~~L~L~~N-~~~~-~~~~~~~i~~~L~~LdLs~N~-li~~--~--~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt  297 (505)
T KOG3207|consen  225 EVLYLEAN-EIIL-IKATSTKILQTLQELDLSNNN-LIDF--D--QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKT  297 (505)
T ss_pred             HHhhhhcc-cccc-eecchhhhhhHHhhccccCCc-cccc--c--cccccccccchhhhhccccCcchhcCCCccchhhh
Confidence            99999988 4211 222222 24588888888872 1110  1  2234445677777777766544221         2


Q ss_pred             ecCCCceeEEEEEEEc
Q 038991          239 HDLQFLQTVNLAILFL  254 (287)
Q Consensus       239 ~~~p~L~~~~l~~~~~  254 (287)
                      ..+|+|+.+.+..+..
T Consensus       298 ~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  298 HTFPKLEYLNISENNI  313 (505)
T ss_pred             cccccceeeecccCcc
Confidence            3567788777765543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.90  E-value=5.8e-07  Score=78.67  Aligned_cols=59  Identities=20%  Similarity=0.100  Sum_probs=28.3

Q ss_pred             CcccEEEeceeecccc-----CCCcccC-CCccEEEE-EEEeCCc--chHHHHHccCCccceEEeeee
Q 038991          118 RSLEVLKLDYDFDIAV-----PVSGMCF-PNLKFLRV-SLQYPEN--QLTEKLFSSCPSIEELCLKVY  176 (287)
Q Consensus       118 ~~L~~L~L~~~~~~~~-----~~~~~~~-~~L~~L~L-~~~~~~~--~~l~~l~~~cp~Le~L~l~~c  176 (287)
                      ++|++|++++|.+.+.     ......+ ++|+.|+| ++.+...  ..+...+..++.|+.|++.+|
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n  175 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN  175 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence            3466666666544310     0011233 56666666 5555431  113334455556666666666

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.86  E-value=1.1e-06  Score=76.90  Aligned_cols=185  Identities=14%  Similarity=0.008  Sum_probs=114.1

Q ss_pred             CCceEEEEEEecCcc---ccCCCCCcCC-CcccEEEeceeeccc-----cCCCcccCCCccEEEE-EEEeCCcchHHHH-
Q 038991           93 RDVRELELNIENQQR---LELPESIYSC-RSLEVLKLDYDFDIA-----VPVSGMCFPNLKFLRV-SLQYPENQLTEKL-  161 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~---~~l~~~~~~~-~~L~~L~L~~~~~~~-----~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l-  161 (287)
                      +.+++|+++.+....   ..+...+..+ ++|++|++++|.+..     +......+++|++|+| ++.+.+ ..+..+ 
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~  186 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD-AGIRALA  186 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch-HHHHHHH
Confidence            459999997765431   1122233445 789999999997652     1112336689999999 887765 444443 


Q ss_pred             --HccCCccceEEeeeeeccCCC----eeeEEEECCCcceEEEEEeeccccc-cccCCcccEEEEcCccEEEEEEecccc
Q 038991          162 --FSSCPSIEELCLKVYLKYDGP----ATNFIISSSTLKRFYWTVLVDDYNF-AFNNFHHNCLIMAPLLQLLHVVDDLMV  234 (287)
Q Consensus       162 --~~~cp~Le~L~l~~c~~~~~~----~~~l~i~~~~Lk~L~l~~~~~~~~~-~~~~~~~~~~i~ap~L~~L~l~~~~~~  234 (287)
                        +..+++|++|++.+| ...+.    .....-..++|++|++++|  ...- ........+....+.|++|++.++...
T Consensus       187 ~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n--~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         187 EGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN--NLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC--cCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence              455679999999999 65430    1112224689999999998  3210 000000011112479999999988653


Q ss_pred             -------ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcC-CcceEEEEecCe
Q 038991          235 -------SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGI-LNCKSLTLSSGV  283 (287)
Q Consensus       235 -------~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l-~~v~~L~l~~~~  283 (287)
                             .-.+..++.|+.++++.+...  ......+.+.++.. ++++.|.+..+.
T Consensus       264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         264 DDGAKDLAEVLAEKESLLELDLRGNKFG--EEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             cHHHHHHHHHHhcCCCccEEECCCCCCc--HHHHHHHHHHHhhcCCchhhcccCCCC
Confidence                   112345577888877655322  11233577788888 889999887764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.84  E-value=6.8e-07  Score=71.14  Aligned_cols=101  Identities=22%  Similarity=0.177  Sum_probs=32.8

Q ss_pred             CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEE
Q 038991           94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELC  172 (287)
Q Consensus        94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~  172 (287)
                      +.++|+|..+...  .+...-..+.+|+.|+|++|....+. ....+++|+.|++ +-.+..-.  ..+...||+|++|.
T Consensus        20 ~~~~L~L~~n~I~--~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~--~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIS--TIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSIS--EGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-C--HHHHHH-TT--EEE
T ss_pred             ccccccccccccc--cccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccc--cchHHhCCcCCEEE
Confidence            5677787665532  22221124578999999998877766 5667888999988 66665411  23345689999999


Q ss_pred             eeeeeccCCCeeeEEE--ECCCcceEEEEEe
Q 038991          173 LKVYLKYDGPATNFII--SSSTLKRFYWTVL  201 (287)
Q Consensus       173 l~~c~~~~~~~~~l~i--~~~~Lk~L~l~~~  201 (287)
                      +.+. ...+ ...+..  ..|+|+.|.+.++
T Consensus        95 L~~N-~I~~-l~~l~~L~~l~~L~~L~L~~N  123 (175)
T PF14580_consen   95 LSNN-KISD-LNELEPLSSLPKLRVLSLEGN  123 (175)
T ss_dssp             -TTS----S-CCCCGGGGG-TT--EEE-TT-
T ss_pred             CcCC-cCCC-hHHhHHHHcCCCcceeeccCC
Confidence            9888 5544 322211  3466666666665

>PLN03210 Resistant to P

Probab=97.78  E-value=2.7e-05  Score=79.73  Aligned_cols=32  Identities=9%  Similarity=-0.059  Sum_probs=13.8

Q ss_pred             CCcccEEEeceeeccccCCCcccCCCccEEEE
Q 038991          117 CRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV  148 (287)
Q Consensus       117 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L  148 (287)
                      ..+|++|++.++.+..++.....+++|+.|+|
T Consensus       610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~L  641 (1153)
T PLN03210        610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDL  641 (1153)
T ss_pred             ccCCcEEECcCccccccccccccCCCCCEEEC
Confidence            34455555544443333322333444444444

syringae 6; Provisional

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=1.3e-06  Score=77.05  Aligned_cols=179  Identities=16%  Similarity=0.116  Sum_probs=95.4

Q ss_pred             CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccc---cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991           94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIA---VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE  169 (287)
Q Consensus        94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le  169 (287)
                      .++++.|..+...+......+-.|++++.|+|+.+-+..   +...+.++|+|+.|+| .-.+....+ ...-...++|+
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~~l~~lK  200 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTLLLSHLK  200 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-ccchhhhhhhh
Confidence            444555544433211111234456667777776654322   1112336677777777 544442111 11112456666


Q ss_pred             eEEeeeeeccC--CCeeeEEEECCCcceEEEEEeeccccccccCCcccEEE---EcCccEEEEEEecccc----ceeeec
Q 038991          170 ELCLKVYLKYD--GPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLI---MAPLLQLLHVVDDLMV----SYEVHD  240 (287)
Q Consensus       170 ~L~l~~c~~~~--~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i---~ap~L~~L~l~~~~~~----~~~~~~  240 (287)
                      .|.|+.| +..  + +..+...+|+|+.|.+..+  .      + ......   -...|++|+++++...    .+..+.
T Consensus       201 ~L~l~~C-Gls~k~-V~~~~~~fPsl~~L~L~~N--~------~-~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~  269 (505)
T KOG3207|consen  201 QLVLNSC-GLSWKD-VQWILLTFPSLEVLYLEAN--E------I-ILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGT  269 (505)
T ss_pred             eEEeccC-CCCHHH-HHHHHHhCCcHHHhhhhcc--c------c-cceecchhhhhhHHhhccccCCccccccccccccc
Confidence            7777777 432  2 3344456677777776666  1      1 011111   1236778888877643    466788


Q ss_pred             CCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          241 LQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       241 ~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      +|.|..+++..+-...-.+.+.....-...++.++.|.++.|.|
T Consensus       270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            88888888876643211111223345566788888898888877

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.66  E-value=6.4e-05  Score=39.75  Aligned_cols=25  Identities=36%  Similarity=0.739  Sum_probs=22.9

Q ss_pred             CccEEEE-EEEeCCcchHHHHHccCC
Q 038991          142 NLKFLRV-SLQYPENQLTEKLFSSCP  166 (287)
Q Consensus       142 ~L~~L~L-~~~~~~~~~l~~l~~~cp  166 (287)
                      +||+|+| +|.+.++..++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            6999999 999988678999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.52  E-value=5.9e-05  Score=69.35  Aligned_cols=128  Identities=14%  Similarity=0.181  Sum_probs=79.6

Q ss_pred             CCceEEEEEEecCccccCCCCCcC-CCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991           93 RDVRELELNIENQQRLELPESIYS-CRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE  169 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le  169 (287)
                      ..++.|||+.+.  ...+|...|. ..++++|+|+++.+.++.. .+.++.+|.+|.| .-++..  --...++..|.||
T Consensus       149 ~alrslDLSrN~--is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt--Lp~r~Fk~L~~L~  224 (873)
T KOG4194|consen  149 PALRSLDLSRNL--ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT--LPQRSFKRLPKLE  224 (873)
T ss_pred             hhhhhhhhhhch--hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc--cCHHHhhhcchhh
Confidence            356666776554  3444443344 3779999999998876432 4557889999999 777654  2246688899999


Q ss_pred             eEEeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecc
Q 038991          170 ELCLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDL  232 (287)
Q Consensus       170 ~L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~  232 (287)
                      .|+|... ...- ++.+.. ..++|+.|.+..+  +.. .++   .+....+-+++.|++..+.
T Consensus       225 ~LdLnrN-~iri-ve~ltFqgL~Sl~nlklqrN--~I~-kL~---DG~Fy~l~kme~l~L~~N~  280 (873)
T KOG4194|consen  225 SLDLNRN-RIRI-VEGLTFQGLPSLQNLKLQRN--DIS-KLD---DGAFYGLEKMEHLNLETNR  280 (873)
T ss_pred             hhhcccc-ceee-ehhhhhcCchhhhhhhhhhc--Ccc-ccc---Ccceeeecccceeecccch
Confidence            9999988 5432 222333 4578888887766  221 111   1344445555555555443

>PLN03210 Resistant to P

Probab=97.47  E-value=0.00014  Score=74.60  Aligned_cols=85  Identities=14%  Similarity=0.065  Sum_probs=39.6

Q ss_pred             CCCcCCCcccEEEeceeecc-ccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEE
Q 038991          112 ESIYSCRSLEVLKLDYDFDI-AVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIIS  189 (287)
Q Consensus       112 ~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~  189 (287)
                      ..+..+++|+.|+|+++... .+| ....+++|+.|+| +|....  .+..-+..+++|+.|++.+| ..-..++ ..+.
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~--~lp~si~~L~~L~~L~L~~c-~~L~~Lp-~~i~  702 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLV--ELPSSIQYLNKLEDLDMSRC-ENLEILP-TGIN  702 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCcc--ccchhhhccCCCCEEeCCCC-CCcCccC-CcCC
Confidence            33444555666666554322 233 3445566666666 543221  12222445566666666666 2111011 1123


Q ss_pred             CCCcceEEEEEe
Q 038991          190 SSTLKRFYWTVL  201 (287)
Q Consensus       190 ~~~Lk~L~l~~~  201 (287)
                      .++|+.|.+.+|
T Consensus       703 l~sL~~L~Lsgc  714 (1153)
T PLN03210        703 LKSLYRLNLSGC  714 (1153)
T ss_pred             CCCCCEEeCCCC
Confidence            456666666665

syringae 6; Provisional

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.47  E-value=3.3e-06  Score=67.18  Aligned_cols=124  Identities=15%  Similarity=0.161  Sum_probs=36.8

Q ss_pred             cCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeee-EEEECCC
Q 038991          115 YSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATN-FIISSST  192 (287)
Q Consensus       115 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~-l~i~~~~  192 (287)
                      -.+.++++|+|.++....+..-...+.+|+.|+| +..+..-++    +..++.|++|.+++. .... +.. +.-..|+
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N-~I~~-i~~~l~~~lp~   89 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNN-RISS-ISEGLDKNLPN   89 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS----S--CHHHHHH-TT
T ss_pred             ccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCC-CCCc-cccchHHhCCc
Confidence            3445688888888877665422225778888888 766654222    455788888888888 5543 321 1113577


Q ss_pred             cceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc------ceeeecCCCceeEEE
Q 038991          193 LKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV------SYEVHDLQFLQTVNL  249 (287)
Q Consensus       193 Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~------~~~~~~~p~L~~~~l  249 (287)
                      |+.|.+.++  ... .++. ...+ -..|+|+.|++.|++..      .+.+..+|+|+.++-
T Consensus        90 L~~L~L~~N--~I~-~l~~-l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   90 LQELYLSNN--KIS-DLNE-LEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --EEE-TTS------SCCC-CGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCEEECcCC--cCC-ChHH-hHHH-HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            888877766  221 1111 1111 14577777777777643      234456677766653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.45  E-value=1.9e-05  Score=68.08  Aligned_cols=139  Identities=17%  Similarity=0.188  Sum_probs=79.5

Q ss_pred             cCCCccEEEE-EEEeCC--cchHHHHHccCCccceEEeeeeeccCCC-e-----------eeEEE-ECCCcceEEEEEee
Q 038991          139 CFPNLKFLRV-SLQYPE--NQLTEKLFSSCPSIEELCLKVYLKYDGP-A-----------TNFII-SSSTLKRFYWTVLV  202 (287)
Q Consensus       139 ~~~~L~~L~L-~~~~~~--~~~l~~l~~~cp~Le~L~l~~c~~~~~~-~-----------~~l~i-~~~~Lk~L~l~~~~  202 (287)
                      .+|.|++|+| +-.+..  ...+..++++|..|++|.|.+| +..-. -           ..-++ ..|.||.+....+ 
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-  167 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-  167 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-
Confidence            5566666666 544443  2457788888888898888888 54210 0           01122 3457777777766 


Q ss_pred             ccccccccCCc---ccEEEEcCccEEEEEEecccc-------ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCC
Q 038991          203 DDYNFAFNNFH---HNCLIMAPLLQLLHVVDDLMV-------SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGIL  272 (287)
Q Consensus       203 ~~~~~~~~~~~---~~~~i~ap~L~~L~l~~~~~~-------~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~  272 (287)
                       ...   ++..   ....-..|.|+.+++..+...       ...+..+|+|+.+++.-++..  ...+..+.+.+..++
T Consensus       168 -rle---n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft--~egs~~LakaL~s~~  241 (382)
T KOG1909|consen  168 -RLE---NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT--LEGSVALAKALSSWP  241 (382)
T ss_pred             -ccc---cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh--hHHHHHHHHHhcccc
Confidence             211   1100   011123477777777766543       234567777777777655321  112345666777777


Q ss_pred             cceEEEEecCeeE
Q 038991          273 NCKSLTLSSGVIL  285 (287)
Q Consensus       273 ~v~~L~l~~~~i~  285 (287)
                      +++.|.++...++
T Consensus       242 ~L~El~l~dcll~  254 (382)
T KOG1909|consen  242 HLRELNLGDCLLE  254 (382)
T ss_pred             hheeecccccccc
Confidence            7777777766554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.28  E-value=4.1e-05  Score=67.54  Aligned_cols=162  Identities=16%  Similarity=0.092  Sum_probs=102.5

Q ss_pred             CCCCCcCCCcccEEEeceeeccc---cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccC--CCe
Q 038991          110 LPESIYSCRSLEVLKLDYDFDIA---VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYD--GPA  183 (287)
Q Consensus       110 l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~--~~~  183 (287)
                      +......|..|+.|..++|...+   +..-..++++|+.|-+ .+.-..+..+..+-.+||.||.|.+..| ...  +..
T Consensus       286 ~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~-~~~~d~tL  364 (483)
T KOG4341|consen  286 LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC-GLITDGTL  364 (483)
T ss_pred             HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc-ceehhhhH
Confidence            33444567888888888886643   1213347888999998 8765555778888888999999999888 321  113


Q ss_pred             eeEEEECCCcceEEEEEeeccccccccCC--cccEEEEcCccEEEEEEecccc----ceeeecCCCceeEEEEEEEcccc
Q 038991          184 TNFIISSSTLKRFYWTVLVDDYNFAFNNF--HHNCLIMAPLLQLLHVVDDLMV----SYEVHDLQFLQTVNLAILFLQWS  257 (287)
Q Consensus       184 ~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~--~~~~~i~ap~L~~L~l~~~~~~----~~~~~~~p~L~~~~l~~~~~~~~  257 (287)
                      ..+...+|.|+.|.++.|....+   +|.  .....-.+-.|+.+.+.+++..    ...+..++.|+.+.+--+...  
T Consensus       365 ~sls~~C~~lr~lslshce~itD---~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v--  439 (483)
T KOG4341|consen  365 ASLSRNCPRLRVLSLSHCELITD---EGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV--  439 (483)
T ss_pred             hhhccCCchhccCChhhhhhhhh---hhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh--
Confidence            45666788899998888731111   110  0111224567788888887654    234567788888554333221  


Q ss_pred             ccChhhHHHHHhcCCcceEEEE
Q 038991          258 VLNPWEVVQLLNGILNCKSLTL  279 (287)
Q Consensus       258 ~~~~~~~~~~l~~l~~v~~L~l  279 (287)
                        ....+..+-+.++|++...+
T Consensus       440 --tk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  440 --TKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             --hhhhhHHHHhhCccceehhh
Confidence              12346788888888877654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.10  E-value=8.6e-05  Score=64.09  Aligned_cols=182  Identities=16%  Similarity=0.135  Sum_probs=113.5

Q ss_pred             CceEEEEEEecCc---cccCCCCCcCCCcccEEEeceeeccccC--------------CCcccCCCccEEEE-EEEeCCc
Q 038991           94 DVRELELNIENQQ---RLELPESIYSCRSLEVLKLDYDFDIAVP--------------VSGMCFPNLKFLRV-SLQYPEN  155 (287)
Q Consensus        94 ~l~~L~l~~~~~~---~~~l~~~~~~~~~L~~L~L~~~~~~~~~--------------~~~~~~~~L~~L~L-~~~~~~~  155 (287)
                      .++.++|+-+-.+   ...+...+.+|.+|++|.|.+|......              .....=|.|+++.. .-++-+.
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence            7888888755433   3344456667899999999998553211              01124478888888 7777654


Q ss_pred             c--hHHHHHccCCccceEEeeeeeccCCCeeeEEE------ECCCcceEEEEEeeccccccccCC--cccEEEEcCccEE
Q 038991          156 Q--LTEKLFSSCPSIEELCLKVYLKYDGPATNFII------SSSTLKRFYWTVLVDDYNFAFNNF--HHNCLIMAPLLQL  225 (287)
Q Consensus       156 ~--~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i------~~~~Lk~L~l~~~~~~~~~~~~~~--~~~~~i~ap~L~~  225 (287)
                      .  .+...+..+|.||++.+.+. +..  ...+..      .+|+||.|++.++  .++  ..|.  .....-.-|+|+.
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN-~I~--~eG~~al~eal~~~~~LevLdl~DN--tft--~egs~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQN-GIR--PEGVTALAEALEHCPHLEVLDLRDN--TFT--LEGSVALAKALSSWPHLRE  245 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecc-ccc--CchhHHHHHHHHhCCcceeeecccc--hhh--hHHHHHHHHHhcccchhee
Confidence            3  36778889999999999888 542  112211      5789999999888  332  1220  1111123467888


Q ss_pred             EEEEecccc---ce-----eeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          226 LHVVDDLMV---SY-----EVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       226 L~l~~~~~~---~~-----~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      +++.+|...   .+     .-...|+|+.+.+..+.....  .+..+..-+..-+.++.|.++.|.+
T Consensus       246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d--a~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD--AALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHH--HHHHHHHHHhcchhhHHhcCCcccc
Confidence            888888643   11     223478888887766643211  1223455555577888888887765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.09  E-value=0.00013  Score=70.33  Aligned_cols=144  Identities=17%  Similarity=0.091  Sum_probs=80.8

Q ss_pred             CcccEEEeceeeccc-cC--CCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCc
Q 038991          118 RSLEVLKLDYDFDIA-VP--VSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTL  193 (287)
Q Consensus       118 ~~L~~L~L~~~~~~~-~~--~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~L  193 (287)
                      .+|++|+++|..... -+  .....||+|++|.+ +..+.. +.+.++..++|+|..|+++++ ...+ .. -.-..++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~-~dF~~lc~sFpNL~sLDIS~T-nI~n-l~-GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN-DDFSQLCASFPNLRSLDISGT-NISN-LS-GISRLKNL  197 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc-hhHHHHhhccCccceeecCCC-CccC-cH-HHhccccH
Confidence            456666766644332 11  02347899999999 888876 558888899999999999998 5443 21 01133566


Q ss_pred             ceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---------eeecCCCceeEEEEEEEccccccChhhH
Q 038991          194 KRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---------EVHDLQFLQTVNLAILFLQWSVLNPWEV  264 (287)
Q Consensus       194 k~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---------~~~~~p~L~~~~l~~~~~~~~~~~~~~~  264 (287)
                      +.|.+.+-  .+.   ......-.....+|+.|+++.......         .-..+|.|+-++.+.....     ...+
T Consensus       198 q~L~mrnL--e~e---~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~-----~~~l  267 (699)
T KOG3665|consen  198 QVLSMRNL--EFE---SYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN-----EEIL  267 (699)
T ss_pred             HHHhccCC--CCC---chhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh-----HHHH
Confidence            66666655  221   000111223457777777775543211         1124677777776644322     2234


Q ss_pred             HHHHhcCCcce
Q 038991          265 VQLLNGILNCK  275 (287)
Q Consensus       265 ~~~l~~l~~v~  275 (287)
                      .++++.-++++
T Consensus       268 e~ll~sH~~L~  278 (699)
T KOG3665|consen  268 EELLNSHPNLQ  278 (699)
T ss_pred             HHHHHhCccHh
Confidence            55555444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.09  E-value=3.6e-05  Score=63.89  Aligned_cols=135  Identities=18%  Similarity=0.083  Sum_probs=88.5

Q ss_pred             CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEE
Q 038991           94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELC  172 (287)
Q Consensus        94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~  172 (287)
                      .++++.+..+......+.........|+.|++.++...++. ..-.+|+||+|.+ .-.+....++.-++..||+|.+|+
T Consensus        19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~   97 (260)
T KOG2739|consen   19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLN   97 (260)
T ss_pred             hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEe
Confidence            34445554333223344444555667777888777665543 4447899999999 653433356777888899999999


Q ss_pred             eeeeeccCCCeeeEEE--ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc
Q 038991          173 LKVYLKYDGPATNFII--SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV  234 (287)
Q Consensus       173 l~~c~~~~~~~~~l~i--~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~  234 (287)
                      +++. +... +.++.-  ..++|+.|.+.+|...   +.+.+..++...+|+|++|+..+....
T Consensus        98 ls~N-ki~~-lstl~pl~~l~nL~~Ldl~n~~~~---~l~dyre~vf~ll~~L~~LD~~dv~~~  156 (260)
T KOG2739|consen   98 LSGN-KIKD-LSTLRPLKELENLKSLDLFNCSVT---NLDDYREKVFLLLPSLKYLDGCDVDGE  156 (260)
T ss_pred             ecCC-cccc-ccccchhhhhcchhhhhcccCCcc---ccccHHHHHHHHhhhhccccccccCCc
Confidence            9999 7654 444433  3467999999999321   234434556667899999988766543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.80  E-value=0.0014  Score=63.96  Aligned_cols=55  Identities=18%  Similarity=0.204  Sum_probs=32.1

Q ss_pred             cCCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeC
Q 038991           92 MRDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYP  153 (287)
Q Consensus        92 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~  153 (287)
                      ..+-..|+++...  ...+|..+.  ++|+.|.+.++.+..+|.   ..++|+.|+| +..+.
T Consensus       200 ~~~~~~LdLs~~~--LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lt  255 (788)
T PRK15387        200 NNGNAVLNVGESG--LTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT  255 (788)
T ss_pred             cCCCcEEEcCCCC--CCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccC
Confidence            3455566665443  345666543  357777777776655551   3567777777 55443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.78  E-value=0.00034  Score=45.41  Aligned_cols=57  Identities=26%  Similarity=0.309  Sum_probs=35.8

Q ss_pred             CcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991          118 RSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY  176 (287)
Q Consensus       118 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c  176 (287)
                      ++|++|.+++|.+..++. ....+++|+.|++ +..+..  .-...+.++|+|+.|++++|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~--i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS--IPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE--EETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc--cCHHHHcCCCCCCEEeCcCC
Confidence            357777777776655543 3346777777777 655532  11234677888888887776

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.70  E-value=0.002  Score=62.80  Aligned_cols=52  Identities=23%  Similarity=0.215  Sum_probs=33.3

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEe
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQY  152 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~  152 (287)
                      .+++.|.+..+.  ...+|..   .++|++|+|+++.+..+|.   ..++|+.|+| +..+
T Consensus       222 ~~L~~L~L~~N~--Lt~LP~l---p~~Lk~LdLs~N~LtsLP~---lp~sL~~L~Ls~N~L  274 (788)
T PRK15387        222 AHITTLVIPDNN--LTSLPAL---PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPL  274 (788)
T ss_pred             cCCCEEEccCCc--CCCCCCC---CCCCcEEEecCCccCcccC---cccccceeeccCCch
Confidence            467788776544  3345532   4679999998887766652   2467777776 5443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.49  E-value=0.00084  Score=65.42  Aligned_cols=55  Identities=27%  Similarity=0.358  Sum_probs=31.1

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeC
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYP  153 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~  153 (287)
                      ..++.|+|+.+..  ..+|..+.  .+|+.|+|+++.+..+|. . -+++|+.|+| +..+.
T Consensus       241 ~~L~~L~Ls~N~L--~~LP~~l~--s~L~~L~Ls~N~L~~LP~-~-l~~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        241 DTIQEMELSINRI--TELPERLP--SALQSLDLFHNKISCLPE-N-LPEELRYLSVYDNSIR  296 (754)
T ss_pred             ccccEEECcCCcc--CcCChhHh--CCCCEEECcCCccCcccc-c-cCCCCcEEECCCCccc
Confidence            4667777665542  34454332  357777777776655541 1 1356777777 65543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.47  E-value=3.2e-05  Score=71.71  Aligned_cols=172  Identities=15%  Similarity=0.133  Sum_probs=105.2

Q ss_pred             CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEE
Q 038991           94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELC  172 (287)
Q Consensus        94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~  172 (287)
                      .++.|.++....+-..+|.++....+|..++|+.+.+..+|.+...+++|++|+| +-.+.+-..   -..---+||.|+
T Consensus       198 sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~---~~~~W~~lEtLN  274 (1255)
T KOG0444|consen  198 SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM---TEGEWENLETLN  274 (1255)
T ss_pred             hhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec---cHHHHhhhhhhc
Confidence            4555565555555677899999999999999999988888877789999999999 776654111   112235789999


Q ss_pred             eeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc--ceeeecCCCceeEEEE
Q 038991          173 LKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV--SYEVHDLQFLQTVNLA  250 (287)
Q Consensus       173 l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~--~~~~~~~p~L~~~~l~  250 (287)
                      ++.. -... .+.-..+.++|+.|...++  ..  .++|.+..+. ...+|+.|....+...  .-.+..|+.|+++.++
T Consensus       275 lSrN-QLt~-LP~avcKL~kL~kLy~n~N--kL--~FeGiPSGIG-KL~~Levf~aanN~LElVPEglcRC~kL~kL~L~  347 (1255)
T KOG0444|consen  275 LSRN-QLTV-LPDAVCKLTKLTKLYANNN--KL--TFEGIPSGIG-KLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLD  347 (1255)
T ss_pred             cccc-hhcc-chHHHhhhHHHHHHHhccC--cc--cccCCccchh-hhhhhHHHHhhccccccCchhhhhhHHHHHhccc
Confidence            9998 4333 4444456789999988877  33  2344211111 2344555554444322  2344566777777665


Q ss_pred             EEEccccccChhhHHHHHhcCCcceEEEEecC
Q 038991          251 ILFLQWSVLNPWEVVQLLNGILNCKSLTLSSG  282 (287)
Q Consensus       251 ~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~  282 (287)
                      -+...       -+..-+.-++.++.|++..|
T Consensus       348 ~NrLi-------TLPeaIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  348 HNRLI-------TLPEAIHLLPDLKVLDLREN  372 (1255)
T ss_pred             cccee-------echhhhhhcCCcceeeccCC
Confidence            33210       12233444555566655543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.45  E-value=4.6e-05  Score=59.63  Aligned_cols=146  Identities=23%  Similarity=0.296  Sum_probs=83.9

Q ss_pred             CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEEEE-EeCCcchHHHHHccCCccceEE
Q 038991           94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRVSL-QYPENQLTEKLFSSCPSIEELC  172 (287)
Q Consensus        94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~  172 (287)
                      ++..|.++-+.  ....|+.+....+|+.|+++++....+|+..+++|.|+.|++++ ++.   .+-+=+.++|.||.|+
T Consensus        34 ~ITrLtLSHNK--l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~---~lprgfgs~p~levld  108 (264)
T KOG0617|consen   34 NITRLTLSHNK--LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN---ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhcccCc--eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh---cCccccCCCchhhhhh
Confidence            34445554433  45567777778888889998888877776777888888888732 221   1222266788889888


Q ss_pred             eeeeeccCC-CeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc--ceeeecCCCceeEEE
Q 038991          173 LKVYLKYDG-PATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV--SYEVHDLQFLQTVNL  249 (287)
Q Consensus       173 l~~c~~~~~-~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~--~~~~~~~p~L~~~~l  249 (287)
                      +.+. .... +...--.--.+|+-|.+.++  .+    +- ..+-+=...+|+-|.+.++...  .-.++.+..|+++.|
T Consensus       109 ltyn-nl~e~~lpgnff~m~tlralyl~dn--df----e~-lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhi  180 (264)
T KOG0617|consen  109 LTYN-NLNENSLPGNFFYMTTLRALYLGDN--DF----EI-LPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHI  180 (264)
T ss_pred             cccc-ccccccCCcchhHHHHHHHHHhcCC--Cc----cc-CChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhc
Confidence            8887 4321 01111112346777777666  21    11 1111113455666666655432  224566667777766


Q ss_pred             EEE
Q 038991          250 AIL  252 (287)
Q Consensus       250 ~~~  252 (287)
                      ...
T Consensus       181 qgn  183 (264)
T KOG0617|consen  181 QGN  183 (264)
T ss_pred             ccc
Confidence            544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.39  E-value=0.00047  Score=58.62  Aligned_cols=158  Identities=15%  Similarity=0.127  Sum_probs=101.4

Q ss_pred             CcccEEEeceeeccc---cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCc
Q 038991          118 RSLEVLKLDYDFDIA---VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTL  193 (287)
Q Consensus       118 ~~L~~L~L~~~~~~~---~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~L  193 (287)
                      .-++-|.+.+|.+.+   +......+..++.|+| +-.+++=..+..++...|+|+.|+|+.. ....++.++..-..+|
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl  123 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNL  123 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccce
Confidence            345567777775543   1112346889999999 8888776778899999999999999988 5433255565555689


Q ss_pred             ceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce-----eeec-CCCceeEEEEEEEccccccChhhHHHH
Q 038991          194 KRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY-----EVHD-LQFLQTVNLAILFLQWSVLNPWEVVQL  267 (287)
Q Consensus       194 k~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-----~~~~-~p~L~~~~l~~~~~~~~~~~~~~~~~~  267 (287)
                      +.|.+.+.  +..|  .. ..+..-+.|.++.|+++++..+.+     ..+. .|.++++...-|..    ..-.+..++
T Consensus       124 ~~lVLNgT--~L~w--~~-~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~----~~w~~~~~l  194 (418)
T KOG2982|consen  124 RVLVLNGT--GLSW--TQ-STSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLE----QLWLNKNKL  194 (418)
T ss_pred             EEEEEcCC--CCCh--hh-hhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHH----HHHHHHHhH
Confidence            99999887  4322  11 223445679999999988743311     1111 12333333332211    111256788


Q ss_pred             HhcCCcceEEEEecCeeE
Q 038991          268 LNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       268 l~~l~~v~~L~l~~~~i~  285 (287)
                      -+.|+||..+.+..+.|+
T Consensus       195 ~r~Fpnv~sv~v~e~PlK  212 (418)
T KOG2982|consen  195 SRIFPNVNSVFVCEGPLK  212 (418)
T ss_pred             HhhcccchheeeecCccc
Confidence            889999999999887654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.37  E-value=0.00011  Score=68.35  Aligned_cols=162  Identities=22%  Similarity=0.200  Sum_probs=104.0

Q ss_pred             cccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeee
Q 038991          107 RLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATN  185 (287)
Q Consensus       107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~  185 (287)
                      ...+|..+|..+-|+.|+|+.+.+..+|...-.-.++-.|+| +-.+..  --..++.+..-|--|+|++. +.+. .+.
T Consensus        92 nsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet--IPn~lfinLtDLLfLDLS~N-rLe~-LPP  167 (1255)
T KOG0444|consen   92 NSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET--IPNSLFINLTDLLFLDLSNN-RLEM-LPP  167 (1255)
T ss_pred             cCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc--CCchHHHhhHhHhhhccccc-hhhh-cCH
Confidence            667899999999999999999988887755556778888888 655532  22345555566667788888 5443 221


Q ss_pred             EEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc----ceeeecCCCceeEEEEEEEccccccCh
Q 038991          186 FIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV----SYEVHDLQFLQTVNLAILFLQWSVLNP  261 (287)
Q Consensus       186 l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~----~~~~~~~p~L~~~~l~~~~~~~~~~~~  261 (287)
                      -.-+...|+.|.++++  ..    +-....-.-++.+|+.|++++..-.    ..++.++.+|.+++++-+...      
T Consensus       168 Q~RRL~~LqtL~Ls~N--PL----~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp------  235 (1255)
T KOG0444|consen  168 QIRRLSMLQTLKLSNN--PL----NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP------  235 (1255)
T ss_pred             HHHHHhhhhhhhcCCC--hh----hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC------
Confidence            1224457778888877  21    1101111224567777888777533    345667777777777644321      


Q ss_pred             hhHHHHHhcCCcceEEEEecCeeE
Q 038991          262 WEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       262 ~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                       .+..-+-.+.+++.|.+|+|-|+
T Consensus       236 -~vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  236 -IVPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             -cchHHHhhhhhhheeccCcCcee
Confidence             23456667788888888888775

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.25  E-value=0.00018  Score=69.35  Aligned_cols=125  Identities=14%  Similarity=0.158  Sum_probs=67.7

Q ss_pred             CCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCc
Q 038991          116 SCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTL  193 (287)
Q Consensus       116 ~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~L  193 (287)
                      ..++|+.|+|+++.+..+|.. ...++.|+.|+| +-.+..   +..=+..|+.|+.|...+. .... .+ -...+|.|
T Consensus       381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~---Lp~tva~~~~L~tL~ahsN-~l~~-fP-e~~~l~qL  454 (1081)
T KOG0618|consen  381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT---LPDTVANLGRLHTLRAHSN-QLLS-FP-ELAQLPQL  454 (1081)
T ss_pred             cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh---hhHHHHhhhhhHHHhhcCC-ceee-ch-hhhhcCcc
Confidence            346677777776655555432 235666666666 555432   3344556777777776665 2221 12 12256788


Q ss_pred             ceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccccee---eecCCCceeEEEEEE
Q 038991          194 KRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYE---VHDLQFLQTVNLAIL  252 (287)
Q Consensus       194 k~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~---~~~~p~L~~~~l~~~  252 (287)
                      +.++++.+  ..    ...........|+|++|+++|+.-..+.   +..+.++...+++..
T Consensus       455 ~~lDlS~N--~L----~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  455 KVLDLSCN--NL----SEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             eEEecccc--hh----hhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            88888877  32    2111222223379999999988632222   233334444444444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.25  E-value=0.00036  Score=64.46  Aligned_cols=173  Identities=17%  Similarity=0.099  Sum_probs=98.7

Q ss_pred             CCceEEEEEEecCc-cccCCCCCcCCCcccEEEecee-eccc-----cCCCcccCCCccEEEE-EEEeCCcchHHHHHcc
Q 038991           93 RDVRELELNIENQQ-RLELPESIYSCRSLEVLKLDYD-FDIA-----VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSS  164 (287)
Q Consensus        93 ~~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~-~~~~-----~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~  164 (287)
                      .+++++.+..+... ...+-+....|+.|+.|.+++| ....     .......|++|+.|++ .+....+.++..+...
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~  267 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR  267 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence            56777766554322 2224455667788888888873 2211     1113346788888888 7774555788888888


Q ss_pred             CCccceEEeeeeeccCCC-eeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecc-----------
Q 038991          165 CPSIEELCLKVYLKYDGP-ATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDL-----------  232 (287)
Q Consensus       165 cp~Le~L~l~~c~~~~~~-~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~-----------  232 (287)
                      ||+||.|.+.+|....+. +..+.-.+|.|+.|.+.+|....+   .+ ...+....|+|+.|.+.+..           
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d---~~-l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~  343 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD---SG-LEALLKNCPNLRELKLLSLNGCPSLTDLSLS  343 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH---HH-HHHHHHhCcchhhhhhhhcCCCccHHHHHHH
Confidence            999999988888212220 344455678899998888831101   11 12223345555554443332           


Q ss_pred             ---c------cceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcc
Q 038991          233 ---M------VSYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNC  274 (287)
Q Consensus       233 ---~------~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v  274 (287)
                         .      .......++.++++.+..+. ....    .....+.+++++
T Consensus       344 ~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~----~~~~~l~gc~~l  389 (482)
T KOG1947|consen  344 GLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDL----GLELSLRGCPNL  389 (482)
T ss_pred             HhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCc----chHHHhcCCccc
Confidence               1      12334566777776666554 2111    124666666666

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.21  E-value=0.00054  Score=58.28  Aligned_cols=180  Identities=16%  Similarity=0.153  Sum_probs=107.7

Q ss_pred             CCceEEEEEEecCc-cccCCCCCcCCCcccEEEeceeeccc-cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991           93 RDVRELELNIENQQ-RLELPESIYSCRSLEVLKLDYDFDIA-VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE  169 (287)
Q Consensus        93 ~~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le  169 (287)
                      ..+++++|..+... +.++-+.+...+.|+.|+|+.+.... +...+....+|++|.| +..++. ......++..|.+.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w-~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSW-TQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCCh-hhhhhhhhcchhhh
Confidence            48999999776543 45555566677889999999887643 2212246779999999 776654 55677788899999


Q ss_pred             eEEeeeeeccC----CCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc----eeeecC
Q 038991          170 ELCLKVYLKYD----GPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS----YEVHDL  241 (287)
Q Consensus       170 ~L~l~~c~~~~----~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~----~~~~~~  241 (287)
                      +|+++.. .+.    + .....--+|.++.|....|  ..- .... ...+.---||++.+.+..++..+    -....+
T Consensus       150 elHmS~N-~~rq~n~D-d~c~e~~s~~v~tlh~~~c--~~~-~w~~-~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~  223 (418)
T KOG2982|consen  150 ELHMSDN-SLRQLNLD-DNCIEDWSTEVLTLHQLPC--LEQ-LWLN-KNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF  223 (418)
T ss_pred             hhhhccc-hhhhhccc-cccccccchhhhhhhcCCc--HHH-HHHH-HHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence            9998877 321    1 1222225678888888888  211 0000 11222234788888777775441    123344


Q ss_pred             CCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          242 QFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       242 p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      |++.-+++.-..     .+..+-..-|.+++.+..|.++.|.|
T Consensus       224 p~~~~LnL~~~~-----idswasvD~Ln~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  224 PSLSCLNLGANN-----IDSWASVDALNGFPQLVDLRVSENPL  261 (418)
T ss_pred             Ccchhhhhcccc-----cccHHHHHHHcCCchhheeeccCCcc
Confidence            544433333221     11233445566666666666665544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.19  E-value=0.0034  Score=61.30  Aligned_cols=54  Identities=13%  Similarity=0.192  Sum_probs=30.3

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEe
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQY  152 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~  152 (287)
                      ..++.|++..+.  ...+|..++  .+|+.|.+++|.+..+|.  .-.++|+.|+| +..+
T Consensus       199 ~~L~~L~Ls~N~--LtsLP~~l~--~nL~~L~Ls~N~LtsLP~--~l~~~L~~L~Ls~N~L  253 (754)
T PRK15370        199 EQITTLILDNNE--LKSLPENLQ--GNIKTLYANSNQLTSIPA--TLPDTIQEMELSINRI  253 (754)
T ss_pred             cCCcEEEecCCC--CCcCChhhc--cCCCEEECCCCccccCCh--hhhccccEEECcCCcc
Confidence            456777775543  335555443  467777777776655541  12245666666 5544

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=96.08  E-value=0.0021  Score=55.46  Aligned_cols=37  Identities=30%  Similarity=0.440  Sum_probs=34.8

Q ss_pred             CCCCCCCc----hHHHHHHhcCCChhhhhhhccchhhhHhh
Q 038991            1 QDRNSSLL----DSVLCNILSFLTTKIDVATCILSSRWRHV   37 (287)
Q Consensus         1 ~D~is~LP----d~vL~~Ils~L~~~~~~~~s~vSkrW~~l   37 (287)
                      +|.|+.||    |+|-..|||+|+..++.++-.|||+|+++
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            47899999    99999999999999999999999999973

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.95  E-value=0.001  Score=61.49  Aligned_cols=134  Identities=19%  Similarity=0.085  Sum_probs=83.2

Q ss_pred             cCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee-eccCC-C--eeeEEEECCCcceEEEEEeeccccccccCCc
Q 038991          139 CFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY-LKYDG-P--ATNFIISSSTLKRFYWTVLVDDYNFAFNNFH  213 (287)
Q Consensus       139 ~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c-~~~~~-~--~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~  213 (287)
                      .+|.|+.|.+ .+....+.++..+...||.|++|.+.+| ..... .  ...+...+++|+.|.+..|.. ..  -.+ .
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-is--d~~-l  261 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL-VT--DIG-L  261 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc-cC--chh-H
Confidence            4788888888 7766555567788888999999998873 11111 0  112333557888888888821 11  011 2


Q ss_pred             ccEEEEcCccEEEEEEeccc-c----ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEe
Q 038991          214 HNCLIMAPLLQLLHVVDDLM-V----SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLS  280 (287)
Q Consensus       214 ~~~~i~ap~L~~L~l~~~~~-~----~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~  280 (287)
                      ..+.-.+|+|++|.+.++.. .    ......+|+|+++++..+...    ....+....+++++++.|.+.
T Consensus       262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~----~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL----TDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc----hHHHHHHHHHhCcchhhhhhh
Confidence            22333478899988766652 2    223346788999888866432    223456667778887776544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.88  E-value=0.0015  Score=63.03  Aligned_cols=137  Identities=15%  Similarity=0.091  Sum_probs=93.8

Q ss_pred             cCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCC-eeeEEEECCCcceEEEEEeeccccccccCCcccE
Q 038991          139 CFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGP-ATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNC  216 (287)
Q Consensus       139 ~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~-~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~  216 (287)
                      +-.+|+.|++ +......+-...+...+|+|+.|.+.+- .+.+. ...+....|+|..|+|+++  ...    .  ..-
T Consensus       120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T--nI~----n--l~G  190 (699)
T KOG3665|consen  120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT--NIS----N--LSG  190 (699)
T ss_pred             HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC--Ccc----C--cHH
Confidence            3478999999 8665554667788889999999999997 44330 3456668899999999999  432    1  111


Q ss_pred             EEEcCccEEEEEEeccccc----eeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          217 LIMAPLLQLLHVVDDLMVS----YEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       217 ~i~ap~L~~L~l~~~~~~~----~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      .-..++|+.|.+.+-....    ..+-++.+|+.++|+........-....+.+--..+++++.|+.|++++
T Consensus       191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            2246888888887766542    2445678888888876543222111223455556789999999998765

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=95.26  E-value=0.012  Score=37.92  Aligned_cols=55  Identities=24%  Similarity=0.421  Sum_probs=41.1

Q ss_pred             CceEEEEEEecCccccCCCCCc-CCCcccEEEeceeeccccCC-CcccCCCccEEEE-EE
Q 038991           94 DVRELELNIENQQRLELPESIY-SCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SL  150 (287)
Q Consensus        94 ~l~~L~l~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~  150 (287)
                      ++++|++..+.  ...+|...+ .+++|++|+++++.+..++. ....+++|+.|++ +.
T Consensus         2 ~L~~L~l~~n~--l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNK--LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSST--ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCC--CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            57788876553  456665444 57999999999998876543 4568999999998 54

...

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.07  E-value=0.0086  Score=51.25  Aligned_cols=34  Identities=21%  Similarity=0.231  Sum_probs=30.0

Q ss_pred             CCCCchHHHHHHhcC-----CChhhhhhhccchhhhHhh
Q 038991            4 NSSLLDSVLCNILSF-----LTTKIDVATCILSSRWRHV   37 (287)
Q Consensus         4 is~LPd~vL~~Ils~-----L~~~~~~~~s~vSkrW~~l   37 (287)
                      |+.||||||..||..     |+.+++.++|+|||.|+..
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~  145 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC  145 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence            688999999999965     4679999999999999964

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=94.87  E-value=0.0012  Score=63.85  Aligned_cols=144  Identities=15%  Similarity=0.131  Sum_probs=87.7

Q ss_pred             CcccEEEeceeeccc--cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCcc
Q 038991          118 RSLEVLKLDYDFDIA--VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLK  194 (287)
Q Consensus       118 ~~L~~L~L~~~~~~~--~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk  194 (287)
                      +.|+.|.+.++.+.+  +| ...++++||.|+| .-++-.  --..-+...+.||+|+|++. +... +..-...++.|+
T Consensus       359 ~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~--fpas~~~kle~LeeL~LSGN-kL~~-Lp~tva~~~~L~  433 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRLNS--FPASKLRKLEELEELNLSGN-KLTT-LPDTVANLGRLH  433 (1081)
T ss_pred             HHHHHHHHhcCcccccchh-hhccccceeeeeeccccccc--CCHHHHhchHHhHHHhcccc-hhhh-hhHHHHhhhhhH
Confidence            567777777776655  44 6678999999999 765532  11334677889999999999 7544 332233456666


Q ss_pred             eEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccceee-e--cCCCceeEEEEEEEccccccChhhHHHHHhcC
Q 038991          195 RFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYEV-H--DLQFLQTVNLAILFLQWSVLNPWEVVQLLNGI  271 (287)
Q Consensus       195 ~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~-~--~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l  271 (287)
                      .|.-..+  -.    .  ..+-....|.|+.++++.+......+ .  .-|.|+++++..+.+.  ..+    .+-|+.+
T Consensus       434 tL~ahsN--~l----~--~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l--~~d----~~~l~~l  499 (1081)
T KOG0618|consen  434 TLRAHSN--QL----L--SFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL--VFD----HKTLKVL  499 (1081)
T ss_pred             HHhhcCC--ce----e--echhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc--ccc----hhhhHHh
Confidence            6655554  11    1  22223356899999999887552211 1  2278999999877531  111    3445555


Q ss_pred             CcceEEEEe
Q 038991          272 LNCKSLTLS  280 (287)
Q Consensus       272 ~~v~~L~l~  280 (287)
                      .++..+++.
T Consensus       500 ~~l~~~~i~  508 (1081)
T KOG0618|consen  500 KSLSQMDIT  508 (1081)
T ss_pred             hhhhheecc
Confidence            555444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.81  E-value=0.055  Score=43.76  Aligned_cols=59  Identities=25%  Similarity=0.265  Sum_probs=28.9

Q ss_pred             CCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991          117 CRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY  176 (287)
Q Consensus       117 ~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c  176 (287)
                      .+.|..|.|+++.+..+... ...+|+|+.|.| +-.+..=+++.. +.+||.|+.|.+.+.
T Consensus        63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~N  123 (233)
T KOG1644|consen   63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGN  123 (233)
T ss_pred             ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCC
Confidence            45566666666555443211 224566666666 544432122222 445666666666555

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.79  E-value=0.00055  Score=64.72  Aligned_cols=107  Identities=17%  Similarity=0.170  Sum_probs=67.0

Q ss_pred             ccCCccceEEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc-eeeecC
Q 038991          163 SSCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS-YEVHDL  241 (287)
Q Consensus       163 ~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~-~~~~~~  241 (287)
                      .-.|+||.|+|+.. .+.+ +. .--.++.||+|+++++  ..    .- ...+...+-+|+.|.++++.... -.+.++
T Consensus       184 qll~ale~LnLshN-k~~~-v~-~Lr~l~~LkhLDlsyN--~L----~~-vp~l~~~gc~L~~L~lrnN~l~tL~gie~L  253 (1096)
T KOG1859|consen  184 QLLPALESLNLSHN-KFTK-VD-NLRRLPKLKHLDLSYN--CL----RH-VPQLSMVGCKLQLLNLRNNALTTLRGIENL  253 (1096)
T ss_pred             HHHHHhhhhccchh-hhhh-hH-HHHhcccccccccccc--hh----cc-ccccchhhhhheeeeecccHHHhhhhHHhh
Confidence            34588999999998 7765 44 2236889999999887  21    11 12233333458888888887663 346678


Q ss_pred             CCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          242 QFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       242 p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      .+|+.+++..+-...+     .=..+|..++.++.|.+-+|.|
T Consensus       254 ksL~~LDlsyNll~~h-----seL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLSEH-----SELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhhhccchhHhhhhcc-----hhhhHHHHHHHHHHHhhcCCcc
Confidence            8888888765432211     1235566666666666666543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=94.75  E-value=0.0016  Score=55.54  Aligned_cols=122  Identities=15%  Similarity=0.087  Sum_probs=75.9

Q ss_pred             CcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCcceE
Q 038991          118 RSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKRF  196 (287)
Q Consensus       118 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L  196 (287)
                      .-|++|+|+++....+....--.|.++.|.+ .-.+..-+.    +...|+|..|+|++. .... +.....+.-+.|.|
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n----La~L~~L~~LDLS~N-~Ls~-~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN----LAELPQLQLLDLSGN-LLAE-CVGWHLKLGNIKTL  357 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh----hhhcccceEeecccc-hhHh-hhhhHhhhcCEeee
Confidence            5577888887766554423334678888888 554443222    455688888888887 5444 44455566677778


Q ss_pred             EEEEeeccccccccCCcccEEEEcCccEEEEEEecccc----ceeeecCCCceeEEEEEEE
Q 038991          197 YWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV----SYEVHDLQFLQTVNLAILF  253 (287)
Q Consensus       197 ~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~----~~~~~~~p~L~~~~l~~~~  253 (287)
                      .+..+.  .. .+.| .    =..-+|++|+++++...    .-.+|++|+|+.+.+..+.
T Consensus       358 ~La~N~--iE-~LSG-L----~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  358 KLAQNK--IE-TLSG-L----RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             ehhhhh--Hh-hhhh-h----HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            777762  11 1111 1    12346778888887765    3467888888888876543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=94.64  E-value=0.01  Score=35.66  Aligned_cols=30  Identities=30%  Similarity=0.355  Sum_probs=12.4

Q ss_pred             cccEEEeceeeccccCCCcccCCCccEEEE
Q 038991          119 SLEVLKLDYDFDIAVPVSGMCFPNLKFLRV  148 (287)
Q Consensus       119 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L  148 (287)
                      +|++|.++++.+.+++.....|++|+.|++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l   31 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNL   31 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEe
Confidence            455555555554444311333444444444

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=94.43  E-value=0.0098  Score=35.74  Aligned_cols=37  Identities=24%  Similarity=0.253  Sum_probs=27.2

Q ss_pred             CCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCC
Q 038991          141 PNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDG  181 (287)
Q Consensus       141 ~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~  181 (287)
                      ++|+.|++ +..+.+   +...+..||+|+.|++++| .+.+
T Consensus         1 ~~L~~L~l~~N~i~~---l~~~l~~l~~L~~L~l~~N-~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITD---LPPELSNLPNLETLNLSNN-PISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SS---HGGHGTTCTTSSEEEETSS-CCSB
T ss_pred             CcceEEEccCCCCcc---cCchHhCCCCCCEEEecCC-CCCC
Confidence            57889999 877754   4445788999999999999 6544

...

>PLN03150 hypothetical protein; Provisional

Probab=94.41  E-value=0.028  Score=54.12  Aligned_cols=80  Identities=15%  Similarity=0.087  Sum_probs=49.0

Q ss_pred             cccEEEeceeeccc-cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCcceE
Q 038991          119 SLEVLKLDYDFDIA-VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKRF  196 (287)
Q Consensus       119 ~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L  196 (287)
                      .++.|+|+++.+.. +|.....+++|+.|+| +..+.+  .+...+..+++|+.|+|+++ ...+.+...--..++|+.|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g--~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L  495 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG--NIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRIL  495 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC--cCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEE
Confidence            36777777776543 4434456778888888 665542  23334667788888888877 5544111111245677777


Q ss_pred             EEEEe
Q 038991          197 YWTVL  201 (287)
Q Consensus       197 ~l~~~  201 (287)
                      +++++
T Consensus       496 ~Ls~N  500 (623)
T PLN03150        496 NLNGN  500 (623)
T ss_pred             ECcCC
Confidence            77776

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=94.03  E-value=0.03  Score=49.88  Aligned_cols=38  Identities=18%  Similarity=0.127  Sum_probs=33.4

Q ss_pred             CCCCCchHHHHHHhcCCC-hhhhhhhccchhhhHhhhCC
Q 038991            3 RNSSLLDSVLCNILSFLT-TKIDVATCILSSRWRHVCTS   40 (287)
Q Consensus         3 ~is~LPd~vL~~Ils~L~-~~~~~~~s~vSkrW~~lw~~   40 (287)
                      ..++||+|+|..|..+|+ .-|++|.+.||+.||..-..
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            368999999999999997 48999999999999986543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=93.89  E-value=0.1  Score=42.25  Aligned_cols=105  Identities=13%  Similarity=0.071  Sum_probs=69.0

Q ss_pred             CcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCC-cchHHHHHccCCccceEEeeeeecc---CCCeeeEEEECCC
Q 038991          118 RSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPE-NQLTEKLFSSCPSIEELCLKVYLKY---DGPATNFIISSST  192 (287)
Q Consensus       118 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~-~~~l~~l~~~cp~Le~L~l~~c~~~---~~~~~~l~i~~~~  192 (287)
                      .....++|+.+.....+ ..-.++.|++|.| +-++.. +..+   ....|+|..|.+.+. ..   .+ +..+. .+|+
T Consensus        42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L---~~~~p~l~~L~LtnN-si~~l~d-l~pLa-~~p~  114 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDL---DTFLPNLKTLILTNN-SIQELGD-LDPLA-SCPK  114 (233)
T ss_pred             cccceecccccchhhcc-cCCCccccceEEecCCcceeeccch---hhhccccceEEecCc-chhhhhh-cchhc-cCCc
Confidence            44667788877665544 4458899999999 766543 2333   344699999999997 33   22 22222 6789


Q ss_pred             cceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecc
Q 038991          193 LKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDL  232 (287)
Q Consensus       193 Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~  232 (287)
                      |+.|++.++.  .. ...++...+.-..|+|+.|++.+--
T Consensus       115 L~~Ltll~Np--v~-~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  115 LEYLTLLGNP--VE-HKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             cceeeecCCc--hh-cccCceeEEEEecCcceEeehhhhh
Confidence            9999999883  22 1123233344467999999997543

>PLN03150 hypothetical protein; Provisional

Probab=93.84  E-value=0.034  Score=53.58  Aligned_cols=70  Identities=19%  Similarity=0.187  Sum_probs=45.3

Q ss_pred             cCCCCCcCCCcccEEEeceeecc-ccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCC
Q 038991          109 ELPESIYSCRSLEVLKLDYDFDI-AVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDG  181 (287)
Q Consensus       109 ~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~  181 (287)
                      .+|..+..+++|+.|+|+++.+. .+|.....+++|+.|+| +..+.+  .+..-+..+++|+.|+|+++ .+.+
T Consensus       433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg--~iP~~l~~L~~L~~L~Ls~N-~l~g  504 (623)
T PLN03150        433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG--SIPESLGQLTSLRILNLNGN-SLSG  504 (623)
T ss_pred             cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC--CCchHHhcCCCCCEEECcCC-cccc
Confidence            45555666677788888777664 34434567777777777 666543  23344667777888887777 5543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=93.76  E-value=0.015  Score=52.67  Aligned_cols=79  Identities=18%  Similarity=0.164  Sum_probs=36.1

Q ss_pred             CcccEEEeceeeccccCCCcccC-CCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCcce
Q 038991          118 RSLEVLKLDYDFDIAVPVSGMCF-PNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKR  195 (287)
Q Consensus       118 ~~L~~L~L~~~~~~~~~~~~~~~-~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~  195 (287)
                      +.++.|.+.+....+++.....+ ++|+.|++ +-.+..   +..-+..+|+|+.|.+.++ ...+ +.......+.|+.
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~---l~~~~~~l~~L~~L~l~~N-~l~~-l~~~~~~~~~L~~  190 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES---LPSPLRNLPNLKNLDLSFN-DLSD-LPKLLSNLSNLNN  190 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhh---hhhhhhccccccccccCCc-hhhh-hhhhhhhhhhhhh
Confidence            34555555555544444222223 15555555 443322   1122445555566655555 4333 2222224455555


Q ss_pred             EEEEEe
Q 038991          196 FYWTVL  201 (287)
Q Consensus       196 L~l~~~  201 (287)
                      |.++++
T Consensus       191 L~ls~N  196 (394)
T COG4886         191 LDLSGN  196 (394)
T ss_pred             eeccCC
Confidence            555555

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.51  E-value=0.0061  Score=49.09  Aligned_cols=90  Identities=17%  Similarity=0.161  Sum_probs=57.9

Q ss_pred             cCCCCCcCCCcccEEEeceeeccc--cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeee
Q 038991          109 ELPESIYSCRSLEVLKLDYDFDIA--VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATN  185 (287)
Q Consensus       109 ~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~  185 (287)
                      .+|---..--.++.++=+++.+..  +. ....+++++.|.+ +|...++..+..+-...|+||+|+|++|....+  ..
T Consensus        92 ~lp~~~~~~~~IeaVDAsds~I~~eGle-~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~--~G  168 (221)
T KOG3864|consen   92 SLPGPNADNVKIEAVDASDSSIMYEGLE-HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD--GG  168 (221)
T ss_pred             cCCCCCCCcceEEEEecCCchHHHHHHH-HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech--hH
Confidence            444332222346666666654321  22 3447888899999 888877788888888889999999999933221  11


Q ss_pred             EE--EECCCcceEEEEEe
Q 038991          186 FI--ISSSTLKRFYWTVL  201 (287)
Q Consensus       186 l~--i~~~~Lk~L~l~~~  201 (287)
                      +.  ...++||.|.+.+-
T Consensus       169 L~~L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  169 LACLLKLKNLRRLHLYDL  186 (221)
T ss_pred             HHHHHHhhhhHHHHhcCc
Confidence            11  15678888888776

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=93.46  E-value=0.011  Score=53.47  Aligned_cols=169  Identities=21%  Similarity=0.206  Sum_probs=107.7

Q ss_pred             CceEEEEEEecCccccCCCCCcCCC-cccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           94 DVRELELNIENQQRLELPESIYSCR-SLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        94 ~l~~L~l~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      .+..+++....  ...++......+ +|+.|+++++.....+.....+|+|+.|.+ +..+.+   +.......++|+.|
T Consensus       117 ~l~~L~l~~n~--i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~---l~~~~~~~~~L~~L  191 (394)
T COG4886         117 NLTSLDLDNNN--ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD---LPKLLSNLSNLNNL  191 (394)
T ss_pred             ceeEEecCCcc--cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh---hhhhhhhhhhhhhe
Confidence            56666654433  567777666664 899999999988776535678999999999 887654   33333378999999


Q ss_pred             EeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc--eeeecCCCceeEEE
Q 038991          172 CLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS--YEVHDLQFLQTVNL  249 (287)
Q Consensus       172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~--~~~~~~p~L~~~~l  249 (287)
                      .+++. .... ++...-....|+.|.+.+.  ..    .. .....-..+++..+.+.+.....  ..++.+++++.+++
T Consensus       192 ~ls~N-~i~~-l~~~~~~~~~L~~l~~~~N--~~----~~-~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~  262 (394)
T COG4886         192 DLSGN-KISD-LPPEIELLSALEELDLSNN--SI----IE-LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDL  262 (394)
T ss_pred             eccCC-cccc-CchhhhhhhhhhhhhhcCC--cc----ee-cchhhhhcccccccccCCceeeeccchhccccccceecc
Confidence            99999 6443 2222112334888888877  21    00 11112234555555544444332  45667788888887


Q ss_pred             EEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          250 AILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      .-....       .+.. +..+.+++.|+++.+.+
T Consensus       263 s~n~i~-------~i~~-~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         263 SNNQIS-------SISS-LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             cccccc-------cccc-ccccCccCEEeccCccc
Confidence            655332       1222 78889999999988654

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.41  E-value=0.069  Score=48.27  Aligned_cols=132  Identities=17%  Similarity=0.127  Sum_probs=75.7

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccc-cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIA-VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE  170 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~  170 (287)
                      ++++.|+++.+.  ...+|.   --.+|++|.+++|.-.. +| .. -.++|+.|.+ +|....     .+   =+.|+.
T Consensus        52 ~~l~~L~Is~c~--L~sLP~---LP~sLtsL~Lsnc~nLtsLP-~~-LP~nLe~L~Ls~Cs~L~-----sL---P~sLe~  116 (426)
T PRK15386         52 RASGRLYIKDCD--IESLPV---LPNELTEITIENCNNLTTLP-GS-IPEGLEKLTVCHCPEIS-----GL---PESVRS  116 (426)
T ss_pred             cCCCEEEeCCCC--CcccCC---CCCCCcEEEccCCCCcccCC-ch-hhhhhhheEccCccccc-----cc---ccccce
Confidence            678899987663  344442   12359999999875433 33 21 1358999999 873221     12   246888


Q ss_pred             EEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccE-EEEcCccEEEEEEeccccceeeecCCCceeEEE
Q 038991          171 LCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNC-LIMAPLLQLLHVVDDLMVSYEVHDLQFLQTVNL  249 (287)
Q Consensus       171 L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~-~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l  249 (287)
                      |.+... .    ...+..-.++|+.|.+.+.  ..    .. .... ..-.++|++|.+.++......-+-.++|+.+++
T Consensus       117 L~L~~n-~----~~~L~~LPssLk~L~I~~~--n~----~~-~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~l  184 (426)
T PRK15386        117 LEIKGS-A----TDSIKNVPNGLTSLSINSY--NP----EN-QARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITL  184 (426)
T ss_pred             EEeCCC-C----CcccccCcchHhheecccc--cc----cc-ccccccccCCcccEEEecCCCcccCcccccccCcEEEe
Confidence            888644 2    2223333458998888554  10    10 0001 112368999999987643211112247888888


Q ss_pred             EE
Q 038991          250 AI  251 (287)
Q Consensus       250 ~~  251 (287)
                      +.
T Consensus       185 s~  186 (426)
T PRK15386        185 HI  186 (426)
T ss_pred             cc
Confidence            64

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=92.86  E-value=0.0054  Score=48.30  Aligned_cols=128  Identities=20%  Similarity=0.168  Sum_probs=77.9

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      .+++.|.+..+.  ..++|..+.+.++|+.|+++.+.....|..+++||.|+.|+| .-.+.+ ..+-.-+-....|.-|
T Consensus        56 ~nlevln~~nnq--ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e-~~lpgnff~m~tlral  132 (264)
T KOG0617|consen   56 KNLEVLNLSNNQ--IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNE-NSLPGNFFYMTTLRAL  132 (264)
T ss_pred             hhhhhhhcccch--hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccccccc-ccCCcchhHHHHHHHH
Confidence            466666765543  678999999999999999998888778878899999999999 776655 2222112223344455


Q ss_pred             EeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEE-EcCccEEEEEEeccc
Q 038991          172 CLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLI-MAPLLQLLHVVDDLM  233 (287)
Q Consensus       172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i-~ap~L~~L~l~~~~~  233 (287)
                      .+.+. .+    +.+.-..-.|+.|+|-...+..-   -  ...-++ ....|++|++.|+-.
T Consensus       133 yl~dn-df----e~lp~dvg~lt~lqil~lrdndl---l--~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  133 YLGDN-DF----EILPPDVGKLTNLQILSLRDNDL---L--SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             HhcCC-Cc----ccCChhhhhhcceeEEeeccCch---h--hCcHHHHHHHHHHHHhccccee
Confidence            55555 32    22222334566666655511100   0  011111 345677777777643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=92.65  E-value=0.027  Score=56.08  Aligned_cols=81  Identities=20%  Similarity=0.103  Sum_probs=48.2

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      +.++.||++.+. ....+|..+...-+|++|+|++.....+|.....+..|..|++ .....  ..+..+....++|+.|
T Consensus       571 ~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l--~~~~~i~~~L~~Lr~L  647 (889)
T KOG4658|consen  571 PLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRL--ESIPGILLELQSLRVL  647 (889)
T ss_pred             cceEEEECCCCC-ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccc--ccccchhhhcccccEE
Confidence            466777776533 2567888888888888888887766655544445555555555 33211  1123334446666666


Q ss_pred             Eeeee
Q 038991          172 CLKVY  176 (287)
Q Consensus       172 ~l~~c  176 (287)
                      .+..-
T Consensus       648 ~l~~s  652 (889)
T KOG4658|consen  648 RLPRS  652 (889)
T ss_pred             Eeecc
Confidence            66554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=91.54  E-value=0.15  Score=43.91  Aligned_cols=64  Identities=19%  Similarity=0.252  Sum_probs=33.0

Q ss_pred             CCCCCcCCCcccEEEeceeeccc---------cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991          110 LPESIYSCRSLEVLKLDYDFDIA---------VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY  176 (287)
Q Consensus       110 l~~~~~~~~~L~~L~L~~~~~~~---------~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c  176 (287)
                      +...+.=|..|+.|.+++...+-         +|-....|.+|+++.+ .|.   ...+..+...=|.|..+.+++.
T Consensus       174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~---~~~i~~~~~~kptl~t~~v~~s  247 (490)
T KOG1259|consen  174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS---TENIVDIELLKPTLQTICVHNT  247 (490)
T ss_pred             hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc---hhheeceeecCchhheeeeecc
Confidence            33333345667888877653310         1212234566666666 553   2334445555566666666554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=90.66  E-value=0.098  Score=49.26  Aligned_cols=37  Identities=27%  Similarity=0.325  Sum_probs=35.0

Q ss_pred             CCCCCCCchHHHHHHhcCCChhhhhhhccchhhhHhh
Q 038991            1 QDRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHV   37 (287)
Q Consensus         1 ~D~is~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~l   37 (287)
                      +|.|+.||-|+..+||++|+.++..+++.+|+.|+.+
T Consensus       105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             cchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            4789999999999999999999999999999999975

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=90.26  E-value=0.071  Score=45.19  Aligned_cols=122  Identities=12%  Similarity=0.053  Sum_probs=64.6

Q ss_pred             HHHHHccCCccceEEeeeeeccCCC----eeeEEEECCCcceEEEEEeeccccccccCC----------cccEEEEcCcc
Q 038991          158 TEKLFSSCPSIEELCLKVYLKYDGP----ATNFIISSSTLKRFYWTVLVDDYNFAFNNF----------HHNCLIMAPLL  223 (287)
Q Consensus       158 l~~l~~~cp~Le~L~l~~c~~~~~~----~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~----------~~~~~i~ap~L  223 (287)
                      +...+..||.|+..+|+.. .+...    ...+..++..|++|.+.+|  +.+ .+-|.          ..+-.-++|.|
T Consensus        84 Ll~aLlkcp~l~~v~LSDN-Afg~~~~e~L~d~is~~t~l~HL~l~Nn--GlG-p~aG~rigkal~~la~nKKaa~kp~L  159 (388)
T COG5238          84 LLKALLKCPRLQKVDLSDN-AFGSEFPEELGDLISSSTDLVHLKLNNN--GLG-PIAGGRIGKALFHLAYNKKAADKPKL  159 (388)
T ss_pred             HHHHHhcCCcceeeecccc-ccCcccchHHHHHHhcCCCceeEEeecC--CCC-ccchhHHHHHHHHHHHHhhhccCCCc
Confidence            3445567888888888777 54320    1122335567888888877  532 11110          11123467889


Q ss_pred             EEEEEEecccc-------ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          224 QLLHVVDDLMV-------SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       224 ~~L~l~~~~~~-------~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      +.+....+-..       ...+..-..|+.+.+..+... ..+...-+..=++-+.+++.|++..|+.
T Consensus       160 e~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIr-pegv~~L~~~gl~y~~~LevLDlqDNtf  226 (388)
T COG5238         160 EVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIR-PEGVTMLAFLGLFYSHSLEVLDLQDNTF  226 (388)
T ss_pred             eEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcC-cchhHHHHHHHHHHhCcceeeeccccch
Confidence            98876544321       011222246777777544321 1111111222245567899999998875

>PF13013 F-box-like_2: F-box-like domain

Probab=90.14  E-value=0.18  Score=36.65  Aligned_cols=38  Identities=21%  Similarity=0.158  Sum_probs=30.0

Q ss_pred             CCCCchHHHHHHhcCCChhhhhhhccchh---hhHhh-hCCC
Q 038991            4 NSSLLDSVLCNILSFLTTKIDVATCILSS---RWRHV-CTSL   41 (287)
Q Consensus         4 is~LPd~vL~~Ils~L~~~~~~~~s~vSk---rW~~l-w~~~   41 (287)
                      +.+||+||+..|+.+-...+...+...++   .|++. |..+
T Consensus        22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~~~~~L   63 (109)
T PF13013_consen   22 LLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDHIWYLL   63 (109)
T ss_pred             hhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            67899999999999999999988877776   44443 4444

>PRK15386 type III secretion protein GogB; Provisional

Probab=89.52  E-value=0.83  Score=41.48  Aligned_cols=115  Identities=17%  Similarity=0.141  Sum_probs=64.1

Q ss_pred             HcCCceEEEEEEecCccccCCCCCcCCCcccEEEeceee-ccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCcc
Q 038991           91 VMRDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDF-DIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSI  168 (287)
Q Consensus        91 ~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~L  168 (287)
                      ...++++|.+..+.. ...+|..+  ..+|++|.+++|. ...+|      ++|+.|.+ .....   .+..+   =++|
T Consensus        70 LP~sLtsL~Lsnc~n-LtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~L~~n~~~---~L~~L---PssL  134 (426)
T PRK15386         70 LPNELTEITIENCNN-LTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSLEIKGSATD---SIKNV---PNGL  134 (426)
T ss_pred             CCCCCcEEEccCCCC-cccCCchh--hhhhhheEccCcccccccc------cccceEEeCCCCCc---ccccC---cchH
Confidence            345799999866433 23444332  3579999999984 32333      46888887 43221   12222   2468


Q ss_pred             ceEEeeeeeccCCCeeeEE-EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEec
Q 038991          169 EELCLKVYLKYDGPATNFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDD  231 (287)
Q Consensus       169 e~L~l~~c~~~~~~~~~l~-i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~  231 (287)
                      +.|.+.++ .... ...+. .-.++|+.|.+.+|  ...      ..+ ..--++|++|++..+
T Consensus       135 k~L~I~~~-n~~~-~~~lp~~LPsSLk~L~Is~c--~~i------~LP-~~LP~SLk~L~ls~n  187 (426)
T PRK15386        135 TSLSINSY-NPEN-QARIDNLISPSLKTLSLTGC--SNI------ILP-EKLPESLQSITLHIE  187 (426)
T ss_pred             hheecccc-cccc-ccccccccCCcccEEEecCC--Ccc------cCc-ccccccCcEEEeccc
Confidence            88888655 2211 11111 22358999999998  311      000 011258888888654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.41  E-value=0.0021  Score=56.91  Aligned_cols=161  Identities=15%  Similarity=0.090  Sum_probs=92.8

Q ss_pred             cccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeee
Q 038991          107 RLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATN  185 (287)
Q Consensus       107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~  185 (287)
                      -..+|+.+.....++.|+++.+....+|....+.++|++|+. .-.+.+   +..=+..|..||+|...+. .... ...
T Consensus        80 l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~e---l~~~i~~~~~l~dl~~~~N-~i~s-lp~  154 (565)
T KOG0472|consen   80 LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKE---LPDSIGRLLDLEDLDATNN-QISS-LPE  154 (565)
T ss_pred             hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceee---cCchHHHHhhhhhhhcccc-cccc-Cch
Confidence            567788888888888888888877777766778888888888 655543   1112445677888877776 3322 222


Q ss_pred             EEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc--ceeeecCCCc-------------------
Q 038991          186 FIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV--SYEVHDLQFL-------------------  244 (287)
Q Consensus       186 l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~--~~~~~~~p~L-------------------  244 (287)
                      -...+.+|..|.+.+.  ..    .. ...-.|.+.+|++++...+...  ...+|.+.+|                   
T Consensus       155 ~~~~~~~l~~l~~~~n--~l----~~-l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gc  227 (565)
T KOG0472|consen  155 DMVNLSKLSKLDLEGN--KL----KA-LPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGC  227 (565)
T ss_pred             HHHHHHHHHHhhcccc--ch----hh-CCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCcc
Confidence            2233445555555555  21    11 1222334555555555444322  2234444444                   


Q ss_pred             ---eeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991          245 ---QTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       245 ---~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                         .+++++..+..      .--.+.++.++++..|++.+|-|+
T Consensus       228 s~L~Elh~g~N~i~------~lpae~~~~L~~l~vLDLRdNklk  265 (565)
T KOG0472|consen  228 SLLKELHVGENQIE------MLPAEHLKHLNSLLVLDLRDNKLK  265 (565)
T ss_pred             HHHHHHHhcccHHH------hhHHHHhcccccceeeeccccccc
Confidence               44444433211      113567778888888888877654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.80  E-value=0.027  Score=50.15  Aligned_cols=101  Identities=23%  Similarity=0.127  Sum_probs=50.5

Q ss_pred             CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEE
Q 038991           94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELC  172 (287)
Q Consensus        94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~  172 (287)
                      .+++++..-+.  -..+|+.+...++|+.|.|..+....+| .+.+|..|+.|++ .-.+.  .--+...+..++|-.|+
T Consensus       184 ~L~~ld~~~N~--L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~--~lpae~~~~L~~l~vLD  258 (565)
T KOG0472|consen  184 RLKHLDCNSNL--LETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIE--MLPAEHLKHLNSLLVLD  258 (565)
T ss_pred             HHHhcccchhh--hhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHH--hhHHHHhcccccceeee
Confidence            45555543221  3345555556666666666666555455 5556666666666 32221  11123445556666666


Q ss_pred             eeeeeccCCCeeeEEEECCCcceEEEEEe
Q 038991          173 LKVYLKYDGPATNFIISSSTLKRFYWTVL  201 (287)
Q Consensus       173 l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~  201 (287)
                      +.+. .... .+.-.+...+|.+|+++++
T Consensus       259 LRdN-klke-~Pde~clLrsL~rLDlSNN  285 (565)
T KOG0472|consen  259 LRDN-KLKE-VPDEICLLRSLERLDLSNN  285 (565)
T ss_pred             cccc-cccc-CchHHHHhhhhhhhcccCC
Confidence            6666 4333 2222223345666666665

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=85.39  E-value=0.51  Score=21.92  Aligned_cols=14  Identities=21%  Similarity=0.202  Sum_probs=7.7

Q ss_pred             cccEEEeceeeccc
Q 038991          119 SLEVLKLDYDFDIA  132 (287)
Q Consensus       119 ~L~~L~L~~~~~~~  132 (287)
                      +|+.|+|++|.+..
T Consensus         2 ~L~~L~l~~n~L~~   15 (17)
T PF13504_consen    2 NLRTLDLSNNRLTS   15 (17)
T ss_dssp             T-SEEEETSS--SS
T ss_pred             ccCEEECCCCCCCC
Confidence            57778888776543

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=85.39  E-value=0.37  Score=40.45  Aligned_cols=83  Identities=22%  Similarity=0.106  Sum_probs=45.6

Q ss_pred             CCceEEEEEEecCc-cccCCCCCcCCCcccEEEeceeeccc---cCCCcccCCCccEEEE-EEEeCCcch-HHHHHccCC
Q 038991           93 RDVRELELNIENQQ-RLELPESIYSCRSLEVLKLDYDFDIA---VPVSGMCFPNLKFLRV-SLQYPENQL-TEKLFSSCP  166 (287)
Q Consensus        93 ~~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~~~L~~L~L-~~~~~~~~~-l~~l~~~cp  166 (287)
                      .+++.|+++-+... ...++..+..|++|++|+|+++....   ++ ....+++|+.|.+ +|....-.. -..++.-.|
T Consensus        65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~  143 (260)
T KOG2739|consen   65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVFLLLP  143 (260)
T ss_pred             chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence            36666666554322 45555555666777777777765543   22 2335666677777 665543222 234555556


Q ss_pred             ccceEEeeee
Q 038991          167 SIEELCLKVY  176 (287)
Q Consensus       167 ~Le~L~l~~c  176 (287)
                      +|..|+-..+
T Consensus       144 ~L~~LD~~dv  153 (260)
T KOG2739|consen  144 SLKYLDGCDV  153 (260)
T ss_pred             hhcccccccc
Confidence            6665555444

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=84.31  E-value=0.41  Score=24.90  Aligned_cols=12  Identities=42%  Similarity=0.775  Sum_probs=6.4

Q ss_pred             CCccceEEeeee
Q 038991          165 CPSIEELCLKVY  176 (287)
Q Consensus       165 cp~Le~L~l~~c  176 (287)
                      ||+|+.|+|.+|
T Consensus         1 c~~L~~L~l~~C   12 (26)
T smart00367        1 CPNLRELDLSGC   12 (26)
T ss_pred             CCCCCEeCCCCC
Confidence            455555555555

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.61  E-value=0.27  Score=39.80  Aligned_cols=62  Identities=16%  Similarity=0.008  Sum_probs=45.6

Q ss_pred             CcCCCcccEEEeceeeccccC---CCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991          114 IYSCRSLEVLKLDYDFDIAVP---VSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY  176 (287)
Q Consensus       114 ~~~~~~L~~L~L~~~~~~~~~---~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c  176 (287)
                      +..+++++.|.+.+|..++..   -.....|+|+.|+| +|.-.++.++.. +...++|..|.+.+-
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRRLHLYDL  186 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-HHHhhhhHHHHhcCc
Confidence            445688899999999776521   11226799999999 887666677766 456899999988877

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=80.72  E-value=1.1  Score=22.27  Aligned_cols=16  Identities=31%  Similarity=0.391  Sum_probs=12.2

Q ss_pred             cccEEEeceeeccccC
Q 038991          119 SLEVLKLDYDFDIAVP  134 (287)
Q Consensus       119 ~L~~L~L~~~~~~~~~  134 (287)
                      +|++|+|++|.+..+|
T Consensus         1 ~L~~Ldls~n~l~~ip   16 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIP   16 (22)
T ss_dssp             TESEEEETSSEESEEG
T ss_pred             CccEEECCCCcCEeCC
Confidence            4788899888776655

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.04  E-value=0.016  Score=49.08  Aligned_cols=78  Identities=19%  Similarity=0.095  Sum_probs=49.5

Q ss_pred             CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEE
Q 038991           94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELC  172 (287)
Q Consensus        94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~  172 (287)
                      +++.|+...+...+..+   ....+.|++|.|+-+++.++. ....|.+|+.|+| .-.+.+-+.+.. +.+.|+|..|.
T Consensus        20 ~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCccHHHH---HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHh
Confidence            56667766554332221   123356888888888776655 5567888888888 655554223333 56788888888


Q ss_pred             eeee
Q 038991          173 LKVY  176 (287)
Q Consensus       173 l~~c  176 (287)
                      |...
T Consensus        95 L~EN   98 (388)
T KOG2123|consen   95 LDEN   98 (388)
T ss_pred             hccC
Confidence            8664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	287
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 4e-07
 Identities = 37/284 (13%), Positives = 71/284 (25%), Gaps = 100/284 (35%)

Query: 23  IDVATCILSSRWRHVCTSLQTLL--FDATLCIRQGDFTDATMERFEMSKLYLHSYRVSGS 80
           +++  C   +    V   LQ LL   D     R  D +     R    +  L        
Sbjct: 187 LNLKNC---NSPETVLEMLQKLLYQIDPNWTSR-SDHSSNIKLRIHSIQAELRRL----- 237

Query: 81  GRFKGWV---SLAVMRDVRELE----LNIENQQRLELPESIYSCRSLEVLKLDYDFDIAV 133
              K       L V+ +V+  +     N+             SC+ L +          +
Sbjct: 238 --LKSKPYENCLLVLLNVQNAKAWNAFNL-------------SCKIL-LTTRFKQVTDFL 281

Query: 134 PVSGMCFPNLKFLRVSLQYPENQLTEKLFSSCPSI------EELC----LKV-------- 175
             +     +L    ++L   E    + L              E+      ++        
Sbjct: 282 SAATTTHISLDHHSMTLTPDE---VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338

Query: 176 --------YLKYDGPATNFIISSS-------TLKRFYWTVLVDDYNFAFNNFHHNCLIMA 220
                   +   +      II SS         ++ +  + V         F  +  I  
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV---------FPPSAHIPT 389

Query: 221 PLLQLL----------HVVDDLMV-----------SYEVHDLQF 243
            LL L+           VV+ L             +  +  +  
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 58/283 (20%), Positives = 93/283 (32%), Gaps = 91/283 (32%)

Query: 30  LSSRWRHVC--TSLQTLLFDATLCIRQGD---FTDATMERFEM-----SKLY-------- 71
           L S  +      S+ T ++         D   F    + R +        L         
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 72  -LHSYRVSGSGRFKGWVSLAVMRDVRELE--------LNIENQQRLELPESIYSCRSLEV 122
            +    V GSG  K WV+L V    +           LN++N      PE++     LE+
Sbjct: 154 LIDG--VLGSG--KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS---PETV-----LEM 201

Query: 123 L-KLDYDFDIAVPVSGMCFPNLKFLRVSLQYPENQLTEKLFSSCPSIEELCLKVYLKYDG 181
           L KL Y  D          PN           ++    KL      I  +  +  L+   
Sbjct: 202 LQKLLYQID----------PNWT------SRSDHSSNIKL-----RIHSI--QAELRR-- 236

Query: 182 PATNFIISSSTLKRFYWTVLV-DD--YNFAFNNFHHNCLIMAPLL--QLLHVVDDLMVSY 236
                ++ S   +     +LV  +     A+N F+ +C I   LL  +   V D L  + 
Sbjct: 237 -----LLKSKPYEN---CLLVLLNVQNAKAWNAFNLSCKI---LLTTRFKQVTDFLSAAT 285

Query: 237 EVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTL 279
             H         +++     + L P EV  LL   L+C+   L
Sbjct: 286 TTH---------ISLDHHSMT-LTPDEVKSLLLKYLDCRPQDL 318

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	287
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.76
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.75
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.75
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.02
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.92
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.78
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.69
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.68
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.67
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.66
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.66
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.65
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.64
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.61
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.61
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.61
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.6
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.58
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.58
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.57
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.57
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.56
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.55
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.53
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.53
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.53
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.52
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.52
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.52
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.51
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.51
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.5
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.49
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.49
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.46
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.46
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.44
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.41
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.41
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.41
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.4
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.4
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.4
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.39
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.39
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.38
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.37
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.37
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.36
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.36
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.35
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.34
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.33
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.32
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.31
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.31
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.3
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.3
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.26
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.25
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.22
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.21
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.2
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.18
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.1
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.1
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.02
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.02
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.02
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.01
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.99
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.99
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.99
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.97
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.97
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.95
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.95
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.95
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.94
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.94
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.93
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.93
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.87
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.87
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.83
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.83
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.8
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.77
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.76
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.76
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.73
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.69
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.69
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.66
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.6
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.54
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.51
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.5
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.47
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.44
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.44
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.25
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.02
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.0
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.94
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.83
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.76
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.71
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.56
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.48
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.42
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.41
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.16
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.94
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	95.83
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.07
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	94.6
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	94.59
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	93.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	92.74
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	92.34
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	86.02
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	83.27
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	81.57

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.76  E-value=6.5e-20  Score=172.24  Aligned_cols=39  Identities=15%  Similarity=0.428  Sum_probs=32.8

Q ss_pred             CCCC----CCchHHHHHHhcCC-ChhhhhhhccchhhhHhhhCC
Q 038991            2 DRNS----SLLDSVLCNILSFL-TTKIDVATCILSSRWRHVCTS   40 (287)
Q Consensus         2 D~is----~LPd~vL~~Ils~L-~~~~~~~~s~vSkrW~~lw~~   40 (287)
                      ||++    +||||++.+||+|| +.+|++++++|||+|++++..
T Consensus         7 ~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~   50 (592)
T 3ogk_B            7 KRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSE   50 (592)
T ss_dssp             -----CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred             hhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhc
Confidence            4555    89999999999999 899999999999999998543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.75  E-value=2.7e-21  Score=169.30  Aligned_cols=47  Identities=26%  Similarity=0.289  Sum_probs=39.4

Q ss_pred             CCCCCchHHHHHHhcCCChhhhhhhccchhhhHhhhCC---CceEEEecC
Q 038991            3 RNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTS---LQTLLFDAT   49 (287)
Q Consensus         3 ~is~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~lw~~---~~~l~f~~~   49 (287)
                      .+++||||++.+||++|+.+|+++++.|||+|+++...   ...+++...
T Consensus         8 ~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~   57 (336)
T 2ast_B            8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGK   57 (336)
T ss_dssp             CSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTC
T ss_pred             ChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccc
Confidence            48999999999999999999999999999999999632   335555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.75  E-value=2.7e-20  Score=174.77  Aligned_cols=262  Identities=15%  Similarity=0.100  Sum_probs=148.3

Q ss_pred             CCCCCCCchHHHHHHhcCCC-hhhhhhhccchhhhHhhhCC-CceEEEecCCccCccCccchHHHHHHHHh-----hhcc
Q 038991            1 QDRNSSLLDSVLCNILSFLT-TKIDVATCILSSRWRHVCTS-LQTLLFDATLCIRQGDFTDATMERFEMSK-----LYLH   73 (287)
Q Consensus         1 ~D~is~LPd~vL~~Ils~L~-~~~~~~~s~vSkrW~~lw~~-~~~l~f~~~~~~~~~~f~~~~~~~~v~~~-----l~~~   73 (287)
                      +|++++|||||+.+||+||| .+|+++++.|||||+++... ...+.+......  . .     ...+.++     +...
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~--~-~-----~~~~~~~~~L~~L~L~   74 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAV--S-P-----ATVIRRFPKVRSVELK   74 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSS--C-H-----HHHHHHCTTCCEEEEE
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeecccccc--C-H-----HHHHhhCCCceEEecc
Confidence            48999999999999999999 99999999999999988321 223433221110  0 0     1111111     1111


Q ss_pred             cC---------CCcCCcchhhHHHHHHc--CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccc---cCCCccc
Q 038991           74 SY---------RVSGSGRFKGWVSLAVM--RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIA---VPVSGMC  139 (287)
Q Consensus        74 ~~---------~~~~~~~~~~wl~~a~~--~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~  139 (287)
                      ..         +..+...+..|+.....  +++++|+++.+......+......|++|++|+|++|...+   ++.....
T Consensus        75 ~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~  154 (594)
T 2p1m_B           75 GKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT  154 (594)
T ss_dssp             CSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHH
T ss_pred             CCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHh
Confidence            10         12234566778876553  5888888876654322222222257789999998884322   2212237


Q ss_pred             CCCccEEEE-EEEeCCc--chHHHHHccCCccceEEeeeeec--cCCC-eeeEEEECCCcceEEEEEeeccccccccCCc
Q 038991          140 FPNLKFLRV-SLQYPEN--QLTEKLFSSCPSIEELCLKVYLK--YDGP-ATNFIISSSTLKRFYWTVLVDDYNFAFNNFH  213 (287)
Q Consensus       140 ~~~L~~L~L-~~~~~~~--~~l~~l~~~cp~Le~L~l~~c~~--~~~~-~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~  213 (287)
                      +++|+.|+| ++.+.+.  ..+..+...||+|+.|++.+| .  ..+. ...+...+++|+.|.+.+|  ..   ..+ .
T Consensus       155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~~l~~l~~~~~~L~~L~L~~~--~~---~~~-l  227 (594)
T 2p1m_B          155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL-ASEVSFSALERLVTRCPNLKSLKLNRA--VP---LEK-L  227 (594)
T ss_dssp             CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTC-CSCCCHHHHHHHHHHCTTCCEEECCTT--SC---HHH-H
T ss_pred             CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEeccc-CCcCCHHHHHHHHHhCCCCcEEecCCC--Cc---HHH-H
Confidence            888999998 7776542  235555668889999988888 4  1100 1122224688899988877  21   011 1


Q ss_pred             ccEEEEcCccEEEEEEeccc-------------------------------c--ceeeecCCCceeEEEEEEEccccccC
Q 038991          214 HNCLIMAPLLQLLHVVDDLM-------------------------------V--SYEVHDLQFLQTVNLAILFLQWSVLN  260 (287)
Q Consensus       214 ~~~~i~ap~L~~L~l~~~~~-------------------------------~--~~~~~~~p~L~~~~l~~~~~~~~~~~  260 (287)
                      ......+|+|++|.+.++..                               .  ......+++|+++++..+.     ..
T Consensus       228 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-----l~  302 (594)
T 2p1m_B          228 ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-----VQ  302 (594)
T ss_dssp             HHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-----CC
T ss_pred             HHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-----CC
Confidence            22223457777776543311                               0  0011245667777665332     22


Q ss_pred             hhhHHHHHhcCCcceEEEEecC
Q 038991          261 PWEVVQLLNGILNCKSLTLSSG  282 (287)
Q Consensus       261 ~~~~~~~l~~l~~v~~L~l~~~  282 (287)
                      ...+..+++.+++++.|.++.+
T Consensus       303 ~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          303 SYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HHHHHHHHTTCTTCCEEEEEGG
T ss_pred             HHHHHHHHhcCCCcCEEeCcCc
Confidence            3457778888999999998865

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.11  E-value=3.1e-11  Score=105.27  Aligned_cols=149  Identities=14%  Similarity=0.126  Sum_probs=95.9

Q ss_pred             HHcCCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCcc
Q 038991           90 AVMRDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSI  168 (287)
Q Consensus        90 a~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~L  168 (287)
                      +...++++|++..+..  ..+|..++.+++|++|+|+++.+..+|.....+++|+.|+| +..+..   +..-+..+++|
T Consensus        78 ~~~~~l~~L~L~~n~l--~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L  152 (328)
T 4fcg_A           78 ATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRA---LPASIASLNRL  152 (328)
T ss_dssp             HTSTTCCEEEEESSCC--SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCC---CCGGGGGCTTC
T ss_pred             ccccceeEEEccCCCc--hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcccc---CcHHHhcCcCC
Confidence            3346888888876553  47788788888899999988877777755678889999998 766642   22336778889


Q ss_pred             ceEEeeeeeccCCCee-eEE--------EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc--ee
Q 038991          169 EELCLKVYLKYDGPAT-NFI--------ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS--YE  237 (287)
Q Consensus       169 e~L~l~~c~~~~~~~~-~l~--------i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~--~~  237 (287)
                      +.|++.+| ...+... .+.        -..++|+.|.+.++  ...    . .....-..++|++|+++++....  ..
T Consensus       153 ~~L~L~~n-~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n--~l~----~-lp~~l~~l~~L~~L~L~~N~l~~l~~~  224 (328)
T 4fcg_A          153 RELSIRAC-PELTELPEPLASTDASGEHQGLVNLQSLRLEWT--GIR----S-LPASIANLQNLKSLKIRNSPLSALGPA  224 (328)
T ss_dssp             CEEEEEEE-TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE--CCC----C-CCGGGGGCTTCCEEEEESSCCCCCCGG
T ss_pred             CEEECCCC-CCccccChhHhhccchhhhccCCCCCEEECcCC--CcC----c-chHhhcCCCCCCEEEccCCCCCcCchh
Confidence            99999888 4433111 111        13678888888888  321    1 11111235677777777665441  23


Q ss_pred             eecCCCceeEEEEE
Q 038991          238 VHDLQFLQTVNLAI  251 (287)
Q Consensus       238 ~~~~p~L~~~~l~~  251 (287)
                      ++.+++|+.+++..
T Consensus       225 l~~l~~L~~L~Ls~  238 (328)
T 4fcg_A          225 IHHLPKLEELDLRG  238 (328)
T ss_dssp             GGGCTTCCEEECTT
T ss_pred             hccCCCCCEEECcC
Confidence            55666666666653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.02  E-value=4.6e-11  Score=104.15  Aligned_cols=173  Identities=14%  Similarity=0.077  Sum_probs=91.4

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcc--hH-----HHHHcc
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQ--LT-----EKLFSS  164 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~--~l-----~~l~~~  164 (287)
                      ..+++|+++.+..  ..+|..+..+++|++|+|+++.+..+|.....+++|+.|+| ++.+.+.-  .+     ...+.+
T Consensus       104 ~~L~~L~L~~n~l--~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~  181 (328)
T 4fcg_A          104 SHLQHMTIDAAGL--MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG  181 (328)
T ss_dssp             TTCSEEEEESSCC--CCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred             CCCCEEECCCCCc--cchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence            4677777765543  26666666777777777777766655545556777777777 65443210  00     011234


Q ss_pred             CCccceEEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc---ceeeecC
Q 038991          165 CPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV---SYEVHDL  241 (287)
Q Consensus       165 cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~---~~~~~~~  241 (287)
                      +++|+.|++.+| .... +..-.-..++|+.|.++++  ..    .+ .....-..|+|++|+++++...   ...++.+
T Consensus       182 l~~L~~L~L~~n-~l~~-lp~~l~~l~~L~~L~L~~N--~l----~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l  252 (328)
T 4fcg_A          182 LVNLQSLRLEWT-GIRS-LPASIANLQNLKSLKIRNS--PL----SA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGR  252 (328)
T ss_dssp             STTCCEEEEEEE-CCCC-CCGGGGGCTTCCEEEEESS--CC----CC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred             CCCCCEEECcCC-CcCc-chHhhcCCCCCCEEEccCC--CC----Cc-CchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence            777777777777 4432 2211113456777777766  22    11 1111113466666666664432   2234556


Q ss_pred             CCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecC
Q 038991          242 QFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSG  282 (287)
Q Consensus       242 p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~  282 (287)
                      ++|+.+++..+.....      +...+.++++++.|+++.+
T Consensus       253 ~~L~~L~L~~n~~~~~------~p~~~~~l~~L~~L~L~~n  287 (328)
T 4fcg_A          253 APLKRLILKDCSNLLT------LPLDIHRLTQLEKLDLRGC  287 (328)
T ss_dssp             CCCCEEECTTCTTCCB------CCTTGGGCTTCCEEECTTC
T ss_pred             CCCCEEECCCCCchhh------cchhhhcCCCCCEEeCCCC
Confidence            6666666543321100      1122455555666655554

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.92  E-value=6.6e-10  Score=69.67  Aligned_cols=38  Identities=24%  Similarity=0.266  Sum_probs=33.9

Q ss_pred             CCCCCCchHHHHHHhcCCChhhhhhhccchhhhHhhhC
Q 038991            2 DRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCT   39 (287)
Q Consensus         2 D~is~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~lw~   39 (287)
                      +.++.||+|++.+||++|+.+|+++++.|||+|+.+..
T Consensus         7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            35889999999999999999999999999999998643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.78  E-value=9e-10  Score=95.04  Aligned_cols=166  Identities=17%  Similarity=0.135  Sum_probs=94.8

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      .++++|+++.+..  ..++. +..+++|++|+|+++.+..++ ....+++|+.|+| +..+.+-.   . +..+++|+.|
T Consensus        63 ~~L~~L~L~~n~i--~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~---~-l~~l~~L~~L  134 (308)
T 1h6u_A           63 NNLIGLELKDNQI--TDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVT---P-LAGLSNLQVL  134 (308)
T ss_dssp             TTCCEEECCSSCC--CCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCG---G-GTTCTTCCEE
T ss_pred             CCCCEEEccCCcC--CCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCch---h-hcCCCCCCEE
Confidence            4666666654432  22333 455666777777766655544 4556677777777 66554421   1 5667777777


Q ss_pred             EeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce-eeecCCCceeEEEE
Q 038991          172 CLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY-EVHDLQFLQTVNLA  250 (287)
Q Consensus       172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~  250 (287)
                      ++.+| ...+ ... --..++|+.|.+++|  ..    .+ ... .-..++|+.|+++++..... .+..+++|+.++++
T Consensus       135 ~l~~n-~l~~-~~~-l~~l~~L~~L~l~~n--~l----~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~  203 (308)
T 1h6u_A          135 YLDLN-QITN-ISP-LAGLTNLQYLSIGNA--QV----SD-LTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLK  203 (308)
T ss_dssp             ECCSS-CCCC-CGG-GGGCTTCCEEECCSS--CC----CC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECT
T ss_pred             ECCCC-ccCc-Ccc-ccCCCCccEEEccCC--cC----CC-Chh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEcc
Confidence            77777 5544 332 113466777777766  22    11 111 12346777777777655422 25667777777765


Q ss_pred             EEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991          251 ILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       251 ~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      .+...     .  +. -+..+++++.|.++.+.|.
T Consensus       204 ~N~l~-----~--~~-~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          204 NNQIS-----D--VS-PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             TSCCC-----B--CG-GGTTCTTCCEEEEEEEEEE
T ss_pred             CCccC-----c--cc-cccCCCCCCEEEccCCeee
Confidence            43221     0  11 1677888888888877664

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.72  E-value=5.4e-09  Score=91.70  Aligned_cols=176  Identities=14%  Similarity=0.106  Sum_probs=120.7

Q ss_pred             CCceEEEEEEecCccccCCC-CCcCCCcccEEEeceeeccccC-CCcccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991           93 RDVRELELNIENQQRLELPE-SIYSCRSLEVLKLDYDFDIAVP-VSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE  169 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le  169 (287)
                      +.+++|+++.+..  ..++. .+..+++|++|+|+++.+...+ .....+++|+.|+| +..+.+  .....+..+++|+
T Consensus        52 ~~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~  127 (353)
T 2z80_A           52 EAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN--LSSSWFKPLSSLT  127 (353)
T ss_dssp             TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS--CCHHHHTTCTTCS
T ss_pred             ccCcEEECCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc--CCHhHhCCCccCC
Confidence            5789998865543  34444 5677899999999999776643 24568899999999 877653  2345578899999


Q ss_pred             eEEeeeeeccCCCeee--EEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc---eeeecCCCc
Q 038991          170 ELCLKVYLKYDGPATN--FIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS---YEVHDLQFL  244 (287)
Q Consensus       170 ~L~l~~c~~~~~~~~~--l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L  244 (287)
                      .|++.++ ...+ +..  ..-..++|+.|.+.++  ..-   .+......-..++|++|+++++....   ..++.+++|
T Consensus       128 ~L~L~~n-~l~~-l~~~~~~~~l~~L~~L~l~~n--~~~---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  200 (353)
T 2z80_A          128 FLNLLGN-PYKT-LGETSLFSHLTKLQILRVGNM--DTF---TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV  200 (353)
T ss_dssp             EEECTTC-CCSS-SCSSCSCTTCTTCCEEEEEES--SSC---CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred             EEECCCC-CCcc-cCchhhhccCCCCcEEECCCC--ccc---cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence            9999999 6654 333  1224689999999998  210   10000111235899999999887542   346678889


Q ss_pred             eeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991          245 QTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       245 ~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      +++++..+..      ......++..+++++.|+++.+.|.
T Consensus       201 ~~L~l~~n~l------~~~~~~~~~~~~~L~~L~L~~n~l~  235 (353)
T 2z80_A          201 SHLILHMKQH------ILLLEIFVDVTSSVECLELRDTDLD  235 (353)
T ss_dssp             EEEEEECSCS------TTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred             CeecCCCCcc------ccchhhhhhhcccccEEECCCCccc
Confidence            9888864422      1123456677899999999987653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.69  E-value=1.5e-09  Score=87.26  Aligned_cols=78  Identities=15%  Similarity=0.089  Sum_probs=41.3

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      ..+++|+++.+..  ..+| .+..+++|++|++++|....++ ....+++|+.|++ +..+.+ .. ...+..+|+|+.|
T Consensus        44 ~~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~-~~-~~~l~~l~~L~~L  117 (197)
T 4ezg_A           44 NSLTYITLANINV--TDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTS-DK-IPNLSGLTSLTLL  117 (197)
T ss_dssp             HTCCEEEEESSCC--SCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBG-GG-SCCCTTCTTCCEE
T ss_pred             CCccEEeccCCCc--cChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCc-cc-ChhhcCCCCCCEE
Confidence            4666666655432  2344 3555666777777666443333 4445666666666 544432 11 1124456666666


Q ss_pred             Eeeee
Q 038991          172 CLKVY  176 (287)
Q Consensus       172 ~l~~c  176 (287)
                      ++.+|
T Consensus       118 ~Ls~n  122 (197)
T 4ezg_A          118 DISHS  122 (197)
T ss_dssp             ECCSS
T ss_pred             EecCC
Confidence            66666

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.68  E-value=2.3e-09  Score=93.59  Aligned_cols=106  Identities=18%  Similarity=0.179  Sum_probs=45.0

Q ss_pred             HccCCccceEEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce-eeec
Q 038991          162 FSSCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY-EVHD  240 (287)
Q Consensus       162 ~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~  240 (287)
                      +..+++|+.|++.+| ...+ ... ....++|+.|.+.++  ..    .+ . ...-..|+|++|+++++..... .+..
T Consensus       217 ~~~~~~L~~L~l~~n-~l~~-~~~-~~~l~~L~~L~l~~n--~l----~~-~-~~~~~l~~L~~L~l~~n~l~~~~~~~~  285 (347)
T 4fmz_A          217 VANMTRLNSLKIGNN-KITD-LSP-LANLSQLTWLEIGTN--QI----SD-I-NAVKDLTKLKMLNVGSNQISDISVLNN  285 (347)
T ss_dssp             GGGCTTCCEEECCSS-CCCC-CGG-GTTCTTCCEEECCSS--CC----CC-C-GGGTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred             hhcCCcCCEEEccCC-ccCC-Ccc-hhcCCCCCEEECCCC--cc----CC-C-hhHhcCCCcCEEEccCCccCCChhhcC
Confidence            445555555555555 4333 222 112345555555554  21    11 0 0111235555555555543311 2344


Q ss_pred             CCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          241 LQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       241 ~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      +++|+.+++..+...      ......+.++++++.|.++.+.|
T Consensus       286 l~~L~~L~L~~n~l~------~~~~~~l~~l~~L~~L~L~~n~l  323 (347)
T 4fmz_A          286 LSQLNSLFLNNNQLG------NEDMEVIGGLTNLTTLFLSQNHI  323 (347)
T ss_dssp             CTTCSEEECCSSCCC------GGGHHHHHTCTTCSEEECCSSSC
T ss_pred             CCCCCEEECcCCcCC------CcChhHhhccccCCEEEccCCcc
Confidence            555555555433110      11223445555555555555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.67  E-value=1.2e-09  Score=92.98  Aligned_cols=176  Identities=16%  Similarity=0.085  Sum_probs=106.9

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceee-cccc-CCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDF-DIAV-PVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE  169 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~-~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le  169 (287)
                      .++++|+++.+... ...|..+..+++|++|+|+++. ...+ +.....+++|+.|+| +..+.+  .....+..+++|+
T Consensus        56 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~  132 (285)
T 1ozn_A           56 RNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE--LGPGLFRGLAALQ  132 (285)
T ss_dssp             TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCC
T ss_pred             CCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCE--ECHhHhhCCcCCC
Confidence            57788887654321 1224455667888888888875 4443 324457788888888 766543  1123466788888


Q ss_pred             eEEeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc---eeeecCCCce
Q 038991          170 ELCLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS---YEVHDLQFLQ  245 (287)
Q Consensus       170 ~L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~  245 (287)
                      .|++.++ ...+ ...-.+ ..++|+.|.+.++  ...    +......-..++|++|++.++....   ..+.++++|+
T Consensus       133 ~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n--~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  204 (285)
T 1ozn_A          133 YLYLQDN-ALQA-LPDDTFRDLGNLTHLFLHGN--RIS----SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM  204 (285)
T ss_dssp             EEECCSS-CCCC-CCTTTTTTCTTCCEEECCSS--CCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             EEECCCC-cccc-cCHhHhccCCCccEEECCCC--ccc----ccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence            8888888 5443 221111 3467888888777  321    1000111135788888888776542   2456778888


Q ss_pred             eEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991          246 TVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       246 ~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      .+++..+...      ......+..+++++.|+++.|.+.
T Consensus       205 ~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          205 TLYLFANNLS------ALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             EEECCSSCCS------CCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             EeeCCCCcCC------cCCHHHcccCcccCEEeccCCCcc
Confidence            8877644221      112356778888888888887664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.66  E-value=3.5e-09  Score=99.03  Aligned_cols=60  Identities=7%  Similarity=-0.069  Sum_probs=32.5

Q ss_pred             cCccEEEEEEecccc----ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          220 APLLQLLHVVDDLMV----SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       220 ap~L~~L~l~~~~~~----~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      .|+|++|++.++...    ...+..+++|+.++|..+..     ....+..+.+.+++++.|.++.+.|
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l-----~~~~~~~~~~~l~~L~~L~ls~n~i  525 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF-----SERAIAAAVTKLPSLRYLWVQGYRA  525 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC-----BHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred             CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC-----cHHHHHHHHHhcCccCeeECcCCcC
Confidence            455666666555432    11234556666666654421     1223555666677777777776654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.66  E-value=2.5e-09  Score=92.22  Aligned_cols=167  Identities=15%  Similarity=0.093  Sum_probs=122.6

Q ss_pred             cCCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991           92 MRDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE  170 (287)
Q Consensus        92 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~  170 (287)
                      -.++++|++..+..  ..++ .+..+++|++|+|++|.+...+ ....+++|+.|+| +..+.+-.    -+..+++|+.
T Consensus        40 l~~L~~L~l~~~~i--~~l~-~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~  111 (308)
T 1h6u_A           40 LDGITTLSAFGTGV--TTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNVS----AIAGLQSIKT  111 (308)
T ss_dssp             HHTCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCCG----GGTTCTTCCE
T ss_pred             cCCcCEEEeeCCCc--cCch-hhhccCCCCEEEccCCcCCCCh-hHccCCCCCEEEccCCcCCCch----hhcCCCCCCE
Confidence            35899999865542  3344 4667899999999999887766 3778999999999 88776522    3778999999


Q ss_pred             EEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce-eeecCCCceeEEE
Q 038991          171 LCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY-EVHDLQFLQTVNL  249 (287)
Q Consensus       171 L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l  249 (287)
                      |++++| ...+ ... .-..++|+.|.++++  ..    .+ ... .-..++|+.|+++++..... .+..+++|+.+++
T Consensus       112 L~l~~n-~l~~-~~~-l~~l~~L~~L~l~~n--~l----~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l  180 (308)
T 1h6u_A          112 LDLTST-QITD-VTP-LAGLSNLQVLYLDLN--QI----TN-ISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA  180 (308)
T ss_dssp             EECTTS-CCCC-CGG-GTTCTTCCEEECCSS--CC----CC-CGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             EECCCC-CCCC-chh-hcCCCCCCEEECCCC--cc----Cc-Ccc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEEC
Confidence            999999 7665 443 124579999999988  32    22 111 22468999999999876522 3788999999998


Q ss_pred             EEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991          250 AILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      ..+...    ..   . -+..+++++.|.++.|.|.
T Consensus       181 ~~n~l~----~~---~-~l~~l~~L~~L~L~~N~l~  208 (308)
T 1h6u_A          181 DDNKIS----DI---S-PLASLPNLIEVHLKNNQIS  208 (308)
T ss_dssp             CSSCCC----CC---G-GGGGCTTCCEEECTTSCCC
T ss_pred             CCCccC----cC---h-hhcCCCCCCEEEccCCccC
Confidence            654321    11   1 1789999999999998764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.65  E-value=1.2e-09  Score=94.52  Aligned_cols=183  Identities=15%  Similarity=-0.010  Sum_probs=87.4

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeecc-ccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDI-AVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE  170 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~  170 (287)
                      +.+++|+++.+..-...+|..+..+++|++|+|+++.+. ..|.....+++|+.|+| +..+.+  .+...+..+|+|+.
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~  153 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG--TLPPSISSLPNLVG  153 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES--CCCGGGGGCTTCCE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC--cCChHHhcCCCCCe
Confidence            456666665311112234555555666666666666554 23433445666666666 544432  11122445666666


Q ss_pred             EEeeeeeccCCCeeeEEE-ECC-CcceEEEEEeecccc----c-------------cccCCcccEEEEcCccEEEEEEec
Q 038991          171 LCLKVYLKYDGPATNFII-SSS-TLKRFYWTVLVDDYN----F-------------AFNNFHHNCLIMAPLLQLLHVVDD  231 (287)
Q Consensus       171 L~l~~c~~~~~~~~~l~i-~~~-~Lk~L~l~~~~~~~~----~-------------~~~~~~~~~~i~ap~L~~L~l~~~  231 (287)
                      |++.+| ...+ ...-.+ ..+ +|+.|.+.++.-...    +             .+.+......-..++|+.|+++++
T Consensus       154 L~L~~N-~l~~-~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  231 (313)
T 1ogq_A          154 ITFDGN-RISG-AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             EECCSS-CCEE-ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred             EECcCC-cccC-cCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence            666666 3321 000000 112 455554444310000    0             001001111123466777777666


Q ss_pred             ccc--ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991          232 LMV--SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       232 ~~~--~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      ...  ...+..+++|+++++..+...      ..+...+..+++++.|+++.|.|.
T Consensus       232 ~l~~~~~~~~~l~~L~~L~Ls~N~l~------~~~p~~l~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          232 SLAFDLGKVGLSKNLNGLDLRNNRIY------GTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             EECCBGGGCCCCTTCCEEECCSSCCE------ECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             ceeeecCcccccCCCCEEECcCCccc------CcCChHHhcCcCCCEEECcCCccc
Confidence            443  122455677777776533221      012345678888888888888774

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.64  E-value=1.7e-09  Score=91.35  Aligned_cols=174  Identities=18%  Similarity=0.169  Sum_probs=87.3

Q ss_pred             CCceEEEEEEecCccccCCC-CCcCCCcccEEEeceeeccccCCCc-ccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991           93 RDVRELELNIENQQRLELPE-SIYSCRSLEVLKLDYDFDIAVPVSG-MCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE  169 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~-~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le  169 (287)
                      .++++|+++.+..  ..++. .+..+++|++|+|+++.+..++... ..+++|+.|+| +..+..  .....+..+++|+
T Consensus        37 ~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~  112 (270)
T 2o6q_A           37 ADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA--LPIGVFDQLVNLA  112 (270)
T ss_dssp             TTCSEEECCSSCC--SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC--CCTTTTTTCSSCC
T ss_pred             CCCCEEECcCCCC--CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc--CCHhHcccccCCC
Confidence            3566666654432  23333 3445667777777766655544222 35677777777 555432  1112355667777


Q ss_pred             eEEeeeeeccCCCeeeEE-EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---eeecCCCce
Q 038991          170 ELCLKVYLKYDGPATNFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---EVHDLQFLQ  245 (287)
Q Consensus       170 ~L~l~~c~~~~~~~~~l~-i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~  245 (287)
                      .|.+.++ ...+ ...-. -..++|+.|.++++  ..    .+......-..++|++|+++++.....   .+..+++|+
T Consensus       113 ~L~l~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n--~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  184 (270)
T 2o6q_A          113 ELRLDRN-QLKS-LPPRVFDSLTKLTYLSLGYN--EL----QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK  184 (270)
T ss_dssp             EEECCSS-CCCC-CCTTTTTTCTTCCEEECCSS--CC----CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             EEECCCC-ccCe-eCHHHhCcCcCCCEEECCCC--cC----CccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcC
Confidence            7777766 4433 21111 13456666666666  22    110111111346677777766644321   244566666


Q ss_pred             eEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          246 TVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       246 ~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      .+++..+... ..     ....+..+++++.|.++.|.+
T Consensus       185 ~L~L~~N~l~-~~-----~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          185 TLKLDNNQLK-RV-----PEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             EEECCSSCCS-CC-----CTTTTTTCTTCCEEECCSSCB
T ss_pred             EEECCCCcCC-cC-----CHHHhccccCCCEEEecCCCe
Confidence            6666433211 00     012345566666776666543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.61  E-value=1.1e-10  Score=101.57  Aligned_cols=60  Identities=17%  Similarity=0.086  Sum_probs=28.5

Q ss_pred             CCCcccEEEeceee-ccc--cCCCcccCCCccEEEE-EE-EeCCcchHHHHHccCC-ccceEEeeee
Q 038991          116 SCRSLEVLKLDYDF-DIA--VPVSGMCFPNLKFLRV-SL-QYPENQLTEKLFSSCP-SIEELCLKVY  176 (287)
Q Consensus       116 ~~~~L~~L~L~~~~-~~~--~~~~~~~~~~L~~L~L-~~-~~~~~~~l~~l~~~cp-~Le~L~l~~c  176 (287)
                      .+++|++|+|++|. +.+  ++.....+++|+.|+| ++ .+.+ ..+...+..+| +|+.|++.+|
T Consensus       140 ~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE-KHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH-HHHHHHHHHSCTTCCEEECCSC
T ss_pred             cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh-HHHHHHHHhcccCCCEEEeCCC
Confidence            34555555555552 221  2212234555555555 55 3322 33444455555 5555555555

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.61  E-value=6.6e-10  Score=94.55  Aligned_cols=175  Identities=13%  Similarity=0.095  Sum_probs=118.1

Q ss_pred             CCceEEEEEEecCccccCC-CCCcCCCcccEEEeceeecccc-CCCcccCCCccEEEE-EEE-eCCcchHHHHHccCCcc
Q 038991           93 RDVRELELNIENQQRLELP-ESIYSCRSLEVLKLDYDFDIAV-PVSGMCFPNLKFLRV-SLQ-YPENQLTEKLFSSCPSI  168 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L-~~~-~~~~~~l~~l~~~cp~L  168 (287)
                      +.+++|+++.+..  ..++ ..+..+++|++|+|+++.+... +.....+++|+.|+| +.. +..  .....+..+++|
T Consensus        32 ~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~--~~~~~~~~l~~L  107 (285)
T 1ozn_A           32 AASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS--VDPATFHGLGRL  107 (285)
T ss_dssp             TTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC--CCTTTTTTCTTC
T ss_pred             CCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc--cCHHHhcCCcCC
Confidence            5788888865543  3344 3456789999999999877664 435567999999999 765 432  112346789999


Q ss_pred             ceEEeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---eeecCCCc
Q 038991          169 EELCLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---EVHDLQFL  244 (287)
Q Consensus       169 e~L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L  244 (287)
                      +.|++.+| ...+ ...-.+ ..++|+.|.+.++  ..    .+......-..++|++|+++++.....   .+..+++|
T Consensus       108 ~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n--~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  179 (285)
T 1ozn_A          108 HTLHLDRC-GLQE-LGPGLFRGLAALQYLYLQDN--AL----QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL  179 (285)
T ss_dssp             CEEECTTS-CCCC-CCTTTTTTCTTCCEEECCSS--CC----CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CEEECCCC-cCCE-ECHhHhhCCcCCCEEECCCC--cc----cccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence            99999999 6544 221111 3578999999988  32    211111122468999999998866522   36778999


Q ss_pred             eeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991          245 QTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       245 ~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      +.+++..+....      .....+..+++++.|+++.+.|.
T Consensus       180 ~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~  214 (285)
T 1ozn_A          180 DRLLLHQNRVAH------VHPHAFRDLGRLMTLYLFANNLS  214 (285)
T ss_dssp             CEEECCSSCCCE------ECTTTTTTCTTCCEEECCSSCCS
T ss_pred             CEEECCCCcccc------cCHhHccCcccccEeeCCCCcCC
Confidence            999886542211      11245678899999999988663

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.61  E-value=9e-10  Score=93.22  Aligned_cols=172  Identities=13%  Similarity=0.106  Sum_probs=95.4

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      +.+++|++..+..  ..++ .+..+++|++|+++++.+..++ ....+++|+.|+| +..+.+  .....+..+++|+.|
T Consensus        41 ~~L~~L~l~~~~i--~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           41 NSIDQIIANNSDI--KSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQS--LPNGVFDKLTNLKEL  114 (272)
T ss_dssp             TTCCEEECTTSCC--CCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEE
T ss_pred             cceeeeeeCCCCc--cccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCc--cChhHhcCCcCCCEE
Confidence            5677776644332  2222 3455677777777777665544 4556777777777 665543  112335667777777


Q ss_pred             EeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---eeecCCCceeE
Q 038991          172 CLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---EVHDLQFLQTV  247 (287)
Q Consensus       172 ~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~~  247 (287)
                      ++.+| ...+ ...-.+ ..++|+.|.+.++  ..    .+......-..++|+.|+++++.....   .++.+++|+.+
T Consensus       115 ~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~n--~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  186 (272)
T 3rfs_A          115 VLVEN-QLQS-LPDGVFDKLTNLTYLNLAHN--QL----QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL  186 (272)
T ss_dssp             ECTTS-CCCC-CCTTTTTTCTTCCEEECCSS--CC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ECCCC-cCCc-cCHHHhccCCCCCEEECCCC--cc----CccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence            77777 5433 221111 3467777777776  22    110111112356777777777754422   24566777777


Q ss_pred             EEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          248 NLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       248 ~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      ++..+... .     .....+..+++++.|+++.|.+
T Consensus       187 ~L~~N~l~-~-----~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          187 RLYQNQLK-S-----VPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             ECCSSCCS-C-----CCTTTTTTCTTCCEEECCSSCB
T ss_pred             ECCCCcCC-c-----cCHHHHhCCcCCCEEEccCCCc
Confidence            76543221 0     0123456677777777776654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.60  E-value=2.7e-08  Score=92.21  Aligned_cols=176  Identities=12%  Similarity=0.121  Sum_probs=115.6

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccC-CCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVP-VSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE  170 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~  170 (287)
                      +.+++|+++.+... ...|..+..+++|++|+|+++.+...+ .....+++|+.|+| +..+.+  .....+.++++|+.
T Consensus        26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~  102 (549)
T 2z81_A           26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS--LSSSWFGPLSSLKY  102 (549)
T ss_dssp             TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS--CCHHHHTTCTTCCE
T ss_pred             CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc--cCHHHhccCCCCcE
Confidence            57899998766532 223456677899999999999876644 24568999999999 877654  23445788999999


Q ss_pred             EEeeeeeccCCCee--eEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc---eeeecCCCce
Q 038991          171 LCLKVYLKYDGPAT--NFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS---YEVHDLQFLQ  245 (287)
Q Consensus       171 L~l~~c~~~~~~~~--~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~  245 (287)
                      |++++| ...+ ..  ...-..++|+.|.+.++  ...   .+......-..++|++|++.++....   ..++.+++|+
T Consensus       103 L~Ls~n-~l~~-~~~~~~~~~l~~L~~L~L~~n--~~~---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  175 (549)
T 2z81_A          103 LNLMGN-PYQT-LGVTSLFPNLTNLQTLRIGNV--ETF---SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH  175 (549)
T ss_dssp             EECTTC-CCSS-SCSSCSCTTCTTCCEEEEEES--SSC---CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred             EECCCC-cccc-cchhhhhhccCCccEEECCCC--ccc---cccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence            999999 6543 21  11224578999999998  310   00000111235889999999886542   3456677788


Q ss_pred             eEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          246 TVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       246 ~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      +++++.+...      .....++..+++++.|+++.+.+
T Consensus       176 ~L~l~~n~~~------~~~~~~~~~l~~L~~L~L~~n~l  208 (549)
T 2z81_A          176 HLTLHLSESA------FLLEIFADILSSVRYLELRDTNL  208 (549)
T ss_dssp             EEEEECSBST------THHHHHHHSTTTBSEEEEESCBC
T ss_pred             eEecccCccc------ccchhhHhhcccccEEEccCCcc
Confidence            8777644221      11233456677788887777654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.58  E-value=3.9e-09  Score=92.14  Aligned_cols=147  Identities=12%  Similarity=0.092  Sum_probs=69.6

Q ss_pred             cCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCc
Q 038991          115 YSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTL  193 (287)
Q Consensus       115 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~L  193 (287)
                      ..+++|++|+++++.+...+ ....+++|+.|++ ++......  .. +..+++|+.|.+.+| ...+ ... .-..++|
T Consensus       107 ~~l~~L~~L~l~~n~i~~~~-~~~~l~~L~~L~l~~n~~~~~~--~~-~~~l~~L~~L~l~~~-~~~~-~~~-~~~l~~L  179 (347)
T 4fmz_A          107 QNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDL--SP-LSNMTGLNYLTVTES-KVKD-VTP-IANLTDL  179 (347)
T ss_dssp             TTCTTCSEEECTTSCCCCCG-GGTTCTTCCEEECTTCTTCCCC--GG-GTTCTTCCEEECCSS-CCCC-CGG-GGGCTTC
T ss_pred             cCCCcCCEEECcCCcccCch-hhccCCceeEEECCCCCCcccc--cc-hhhCCCCcEEEecCC-CcCC-chh-hccCCCC
Confidence            33444555555544443333 2334455555555 43222111  11 444555555555555 3332 221 1133556


Q ss_pred             ceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce-eeecCCCceeEEEEEEEccccccChhhHHHHHhcCC
Q 038991          194 KRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY-EVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGIL  272 (287)
Q Consensus       194 k~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~  272 (287)
                      +.|.+.+|  ..    .+ ... .-..++|+.|.+.++..... .+..+++|+++++..+...    ..   .. +..++
T Consensus       180 ~~L~l~~n--~l----~~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~----~~---~~-~~~l~  243 (347)
T 4fmz_A          180 YSLSLNYN--QI----ED-ISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT----DL---SP-LANLS  243 (347)
T ss_dssp             SEEECTTS--CC----CC-CGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC----CC---GG-GTTCT
T ss_pred             CEEEccCC--cc----cc-ccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccC----CC---cc-hhcCC
Confidence            66665555  21    11 111 12345666666666554322 2566677777776543211    11   11 67788


Q ss_pred             cceEEEEecCee
Q 038991          273 NCKSLTLSSGVI  284 (287)
Q Consensus       273 ~v~~L~l~~~~i  284 (287)
                      +++.|+++.+.|
T Consensus       244 ~L~~L~l~~n~l  255 (347)
T 4fmz_A          244 QLTWLEIGTNQI  255 (347)
T ss_dssp             TCCEEECCSSCC
T ss_pred             CCCEEECCCCcc
Confidence            888888887755

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.58  E-value=5.8e-09  Score=89.20  Aligned_cols=166  Identities=16%  Similarity=0.161  Sum_probs=103.9

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      ..+++|+++.+..  ..++ .+..+++|++|+|+++.+...+ ....+++|+.|+| +..+.+   +.. +..+++|+.|
T Consensus        46 ~~L~~L~l~~~~i--~~~~-~~~~l~~L~~L~L~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~---~~~-l~~l~~L~~L  117 (291)
T 1h6t_A           46 NSIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKD---LSS-LKDLKKLKSL  117 (291)
T ss_dssp             HTCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC---GGG-GTTCTTCCEE
T ss_pred             CcccEEEccCCCc--ccCh-hHhcCCCCCEEEccCCccCCCc-ccccCCCCCEEECCCCcCCC---Chh-hccCCCCCEE
Confidence            4677777754432  2333 2556788888888888776655 3567888888888 766654   222 6778888888


Q ss_pred             EeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc-eeeecCCCceeEEEE
Q 038991          172 CLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS-YEVHDLQFLQTVNLA  250 (287)
Q Consensus       172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~-~~~~~~p~L~~~~l~  250 (287)
                      ++.+| ...+ ...+. ..++|+.|.++++  ..    .+ . ...-..++|+.|+++++.... ..+..+++|+.++++
T Consensus       118 ~L~~n-~i~~-~~~l~-~l~~L~~L~l~~n--~l----~~-~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~  186 (291)
T 1h6t_A          118 SLEHN-GISD-INGLV-HLPQLESLYLGNN--KI----TD-I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS  186 (291)
T ss_dssp             ECTTS-CCCC-CGGGG-GCTTCCEEECCSS--CC----CC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             ECCCC-cCCC-Chhhc-CCCCCCEEEccCC--cC----Cc-c-hhhccCCCCCEEEccCCccccchhhcCCCccCEEECC
Confidence            88888 6544 32211 3467888888777  32    22 1 112245788888888776542 236677888888775


Q ss_pred             EEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991          251 ILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       251 ~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      .+...    .   + .-+..+++++.|.++.|.|.
T Consensus       187 ~N~i~----~---l-~~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          187 KNHIS----D---L-RALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             SSCCC----B---C-GGGTTCTTCSEEEEEEEEEE
T ss_pred             CCcCC----C---C-hhhccCCCCCEEECcCCccc
Confidence            44221    0   1 12677888888888877653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.57  E-value=1.6e-08  Score=92.06  Aligned_cols=168  Identities=11%  Similarity=0.074  Sum_probs=76.7

Q ss_pred             CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEE
Q 038991           94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELC  172 (287)
Q Consensus        94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~  172 (287)
                      ++++|++..+.  ...+|. +..+++|++|+|++|.+...+ ....+++|+.|++ +..+.+-..    +..+++|+.|+
T Consensus        47 ~l~~L~l~~~~--i~~l~~-~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~  118 (466)
T 1o6v_A           47 QVTTLQADRLG--IKSIDG-VEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITP----LANLTNLTGLT  118 (466)
T ss_dssp             TCCEEECCSSC--CCCCTT-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG----GTTCTTCCEEE
T ss_pred             cccEEecCCCC--CccCcc-hhhhcCCCEEECCCCccCCch-hhhccccCCEEECCCCccccChh----hcCCCCCCEEE
Confidence            55555553322  222332 344555666666665554444 2445556666666 554443111    45556666666


Q ss_pred             eeeeeccCCCeeeEEEECCCcceEEEEEeecccc-c-c---------------ccCCcccEEEEcCccEEEEEEeccccc
Q 038991          173 LKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYN-F-A---------------FNNFHHNCLIMAPLLQLLHVVDDLMVS  235 (287)
Q Consensus       173 l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~-~-~---------------~~~~~~~~~i~ap~L~~L~l~~~~~~~  235 (287)
                      +.+| ...+ ... .-..++|+.|.+.+|  ... . .               ..+ ... .-..++|+.|+++++....
T Consensus       119 L~~n-~l~~-~~~-~~~l~~L~~L~l~~n--~l~~~~~~~~l~~L~~L~l~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~  191 (466)
T 1o6v_A          119 LFNN-QITD-IDP-LKNLTNLNRLELSSN--TISDISALSGLTSLQQLSFGNQVTD-LKP-LANLTTLERLDISSNKVSD  191 (466)
T ss_dssp             CCSS-CCCC-CGG-GTTCTTCSEEEEEEE--EECCCGGGTTCTTCSEEEEEESCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred             CCCC-CCCC-ChH-HcCCCCCCEEECCCC--ccCCChhhccCCcccEeecCCcccC-chh-hccCCCCCEEECcCCcCCC
Confidence            6555 4433 222 112345555555555  110 0 0               000 000 1123556666665554331


Q ss_pred             -eeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          236 -YEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       236 -~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                       ..+..+++|+.+++..+...    ...    -+..+++++.|.++.+.+
T Consensus       192 ~~~l~~l~~L~~L~l~~n~l~----~~~----~~~~l~~L~~L~l~~n~l  233 (466)
T 1o6v_A          192 ISVLAKLTNLESLIATNNQIS----DIT----PLGILTNLDELSLNGNQL  233 (466)
T ss_dssp             CGGGGGCTTCSEEECCSSCCC----CCG----GGGGCTTCCEEECCSSCC
T ss_pred             ChhhccCCCCCEEEecCCccc----ccc----cccccCCCCEEECCCCCc
Confidence             12445566666655432111    000    155667777777776654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.57  E-value=3.8e-09  Score=91.26  Aligned_cols=106  Identities=16%  Similarity=0.152  Sum_probs=76.9

Q ss_pred             CCceEEEEEEecCc-cccCCCCCcCCCcccEEEece-eecc-ccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCcc
Q 038991           93 RDVRELELNIENQQ-RLELPESIYSCRSLEVLKLDY-DFDI-AVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSI  168 (287)
Q Consensus        93 ~~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~-~~~~-~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~L  168 (287)
                      ..+++|++..+... ...+|..+..+++|++|+|++ +.+. ..|.....+++|+.|+| +..+.+  .+...+..+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG--AIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--ECCGGGGGCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC--cCCHHHhCCCCC
Confidence            47899999876543 226788888899999999995 5444 35546678999999999 876642  223347789999


Q ss_pred             ceEEeeeeeccCCCeeeEEEECCCcceEEEEEe
Q 038991          169 EELCLKVYLKYDGPATNFIISSSTLKRFYWTVL  201 (287)
Q Consensus       169 e~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~  201 (287)
                      +.|+++++ ...+......-..++|+.|.++++
T Consensus       128 ~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N  159 (313)
T 1ogq_A          128 VTLDFSYN-ALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             CEEECCSS-EEESCCCGGGGGCTTCCEEECCSS
T ss_pred             CEEeCCCC-ccCCcCChHHhcCCCCCeEECcCC
Confidence            99999999 554311111124689999999887

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.57  E-value=3.8e-09  Score=84.97  Aligned_cols=150  Identities=11%  Similarity=0.014  Sum_probs=105.1

Q ss_pred             cCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE-ECCC
Q 038991          115 YSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII-SSST  192 (287)
Q Consensus       115 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i-~~~~  192 (287)
                      ..+++|++|+++++.+.+++ ....+++|+.|++ ++.+.+-   . .+..+|+|+.|++.+| ...+ ...-.+ ..++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~---~-~l~~l~~L~~L~l~~n-~l~~-~~~~~l~~l~~  113 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY---N-PISGLSNLERLRIMGK-DVTS-DKIPNLSGLTS  113 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC---G-GGTTCTTCCEEEEECT-TCBG-GGSCCCTTCTT
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc---h-hhhcCCCCCEEEeECC-ccCc-ccChhhcCCCC
Confidence            35678999999999887777 7778999999999 7755442   2 4678999999999999 6543 111112 4589


Q ss_pred             cceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecc-cc-ceeeecCCCceeEEEEEEEccccccChhhHHHHHhc
Q 038991          193 LKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDL-MV-SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNG  270 (287)
Q Consensus       193 Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~-~~-~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~  270 (287)
                      |+.|.++++  ...    +......-..|+|++|+++++. .. ...+..+++|+.+++..+...    .   +. .+..
T Consensus       114 L~~L~Ls~n--~i~----~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~----~---~~-~l~~  179 (197)
T 4ezg_A          114 LTLLDISHS--AHD----DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH----D---YR-GIED  179 (197)
T ss_dssp             CCEEECCSS--BCB----GGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCC----C---CT-TGGG
T ss_pred             CCEEEecCC--ccC----cHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCc----C---hH-Hhcc
Confidence            999999998  321    1011112246899999999986 44 235778999999998654221    1   11 5788


Q ss_pred             CCcceEEEEecCeeE
Q 038991          271 ILNCKSLTLSSGVIL  285 (287)
Q Consensus       271 l~~v~~L~l~~~~i~  285 (287)
                      +++++.|.++.|.|.
T Consensus       180 l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          180 FPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CSSCCEEEECBC---
T ss_pred             CCCCCEEEeeCcccC
Confidence            999999999998774

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.56  E-value=4.6e-09  Score=92.12  Aligned_cols=22  Identities=32%  Similarity=0.360  Sum_probs=17.1

Q ss_pred             HHHHHhcCCcceEEEEecCeeE
Q 038991          264 VVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       264 ~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      +.+.+..+++++.|+++.|.|.
T Consensus       269 l~~~l~~l~~L~~L~Ls~N~l~  290 (353)
T 2z80_A          269 VMKLLNQISGLLELEFSRNQLK  290 (353)
T ss_dssp             HHHHHHTCTTCCEEECCSSCCC
T ss_pred             hHHHHhcccCCCEEECCCCCCC
Confidence            5566788889999999887653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.55  E-value=6.5e-09  Score=87.60  Aligned_cols=37  Identities=16%  Similarity=0.026  Sum_probs=17.0

Q ss_pred             cCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEe
Q 038991          115 YSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQY  152 (287)
Q Consensus       115 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~  152 (287)
                      ..+++|++|+|+++.+...+ ....+++|+.|+| +..+
T Consensus        60 ~~l~~L~~L~L~~N~i~~~~-~l~~l~~L~~L~L~~N~l   97 (263)
T 1xeu_A           60 QFFTNLKELHLSHNQISDLS-PLKDLTKLEELSVNRNRL   97 (263)
T ss_dssp             GGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred             hhCCCCCEEECCCCccCCCh-hhccCCCCCEEECCCCcc
Confidence            34445555555555444333 2334455555555 4433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.53  E-value=1.3e-08  Score=92.80  Aligned_cols=20  Identities=20%  Similarity=0.149  Sum_probs=15.2

Q ss_pred             HHHhcCCcceEEEEecCeeE
Q 038991          266 QLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       266 ~~l~~l~~v~~L~l~~~~i~  285 (287)
                      ..+..+++++.|+++.+.|.
T Consensus       242 ~~~~~l~~L~~L~Ls~n~l~  261 (477)
T 2id5_A          242 LAVRHLVYLRFLNLSYNPIS  261 (477)
T ss_dssp             HHHTTCTTCCEEECCSSCCC
T ss_pred             HHhcCccccCeeECCCCcCC
Confidence            56778888888888877653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.53  E-value=2.2e-08  Score=91.15  Aligned_cols=165  Identities=16%  Similarity=0.122  Sum_probs=98.6

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      ..+++|++..+..  ..++. +..+++|++|++++|.+...+ ....+++|+.|++ ++.+.+-.    -+..+++|+.|
T Consensus        90 ~~L~~L~l~~n~l--~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L  161 (466)
T 1o6v_A           90 TKLVDILMNNNQI--ADITP-LANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDIS----ALSGLTSLQQL  161 (466)
T ss_dssp             TTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEEEEEEECCCG----GGTTCTTCSEE
T ss_pred             ccCCEEECCCCcc--ccChh-hcCCCCCCEEECCCCCCCCCh-HHcCCCCCCEEECCCCccCCCh----hhccCCcccEe
Confidence            4556665544332  22222 445566666666666555444 3456666777777 66665422    15566677776


Q ss_pred             EeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc-ceeeecCCCceeEEEE
Q 038991          172 CLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV-SYEVHDLQFLQTVNLA  250 (287)
Q Consensus       172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~-~~~~~~~p~L~~~~l~  250 (287)
                      .+.++ . .+ ... .-..++|+.|.++++  ..    .+ . ...-..++|++|++.++... ...++.+++|+++++.
T Consensus       162 ~l~~~-~-~~-~~~-~~~l~~L~~L~l~~n--~l----~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~  229 (466)
T 1o6v_A          162 SFGNQ-V-TD-LKP-LANLTTLERLDISSN--KV----SD-I-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN  229 (466)
T ss_dssp             EEEES-C-CC-CGG-GTTCTTCCEEECCSS--CC----CC-C-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECC
T ss_pred             ecCCc-c-cC-chh-hccCCCCCEEECcCC--cC----CC-C-hhhccCCCCCEEEecCCcccccccccccCCCCEEECC
Confidence            66543 1 12 111 113467888888777  32    21 1 11224689999999988765 2347789999999986


Q ss_pred             EEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991          251 ILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       251 ~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      .+...    ..    ..+..+++++.|+++.+.|.
T Consensus       230 ~n~l~----~~----~~l~~l~~L~~L~l~~n~l~  256 (466)
T 1o6v_A          230 GNQLK----DI----GTLASLTNLTDLDLANNQIS  256 (466)
T ss_dssp             SSCCC----CC----GGGGGCTTCSEEECCSSCCC
T ss_pred             CCCcc----cc----hhhhcCCCCCEEECCCCccc
Confidence            44221    11    34778999999999988763

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.53  E-value=3.6e-09  Score=90.81  Aligned_cols=58  Identities=16%  Similarity=0.166  Sum_probs=29.1

Q ss_pred             CccEEEEEEecccc----ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          221 PLLQLLHVVDDLMV----SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       221 p~L~~L~l~~~~~~----~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      ++|++|++.++...    ...+..+++|+.+++..+...      ......+..+++++.|.++.+.|
T Consensus       150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~L~~N~l  211 (306)
T 2z66_A          150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE------QLSPTAFNSLSSLQVLNMSHNNF  211 (306)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSCC
T ss_pred             cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC------CcCHHHhcCCCCCCEEECCCCcc
Confidence            55555555554332    123445555555555422110      00123456677788887777655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.52  E-value=3.4e-09  Score=96.17  Aligned_cols=59  Identities=22%  Similarity=0.144  Sum_probs=31.9

Q ss_pred             cCccEEEEEEeccccc---eeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          220 APLLQLLHVVDDLMVS---YEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       220 ap~L~~L~l~~~~~~~---~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      .++|+.|++.++....   ..+.++++|+.+++..+... ..     ....+..+++++.|+++.|.+
T Consensus       241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~-----~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SL-----PHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CC-----CTTSSTTCTTCCEEECCSSCE
T ss_pred             ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-cc-----ChHHhccccCCCEEEccCCCc
Confidence            4566666666554431   23455666666666533211 00     123456677777777777755

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.52  E-value=6.5e-09  Score=81.25  Aligned_cols=104  Identities=21%  Similarity=0.106  Sum_probs=71.3

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      +.+++|++..+......+|..+..+++|++|++++|.+.... ....+++|+.|+| +..+.+.  +...+..+|+|+.|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS-NLPKLPKLKKLELSENRIFGG--LDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCS-SCCCCSSCCEEEEESCCCCSC--CCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChh-hhccCCCCCEEECcCCcCchH--HHHHHhhCCCCCEE
Confidence            578888887665432367777777888999999888766553 5667888999988 7776541  44556678889999


Q ss_pred             EeeeeeccCCCeee--EEEECCCcceEEEEEe
Q 038991          172 CLKVYLKYDGPATN--FIISSSTLKRFYWTVL  201 (287)
Q Consensus       172 ~l~~c~~~~~~~~~--l~i~~~~Lk~L~l~~~  201 (287)
                      ++++| ...+ ...  .--..++|+.|.+.++
T Consensus       101 ~Ls~N-~l~~-~~~~~~l~~l~~L~~L~l~~N  130 (168)
T 2ell_A          101 NLSGN-KLKD-ISTLEPLKKLECLKSLDLFNC  130 (168)
T ss_dssp             ECBSS-SCCS-SGGGGGGSSCSCCCEEECCSS
T ss_pred             eccCC-ccCc-chhHHHHhcCCCCCEEEeeCC
Confidence            98888 6554 221  1113456666666666

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.52  E-value=4.1e-10  Score=105.37  Aligned_cols=183  Identities=14%  Similarity=0.115  Sum_probs=118.4

Q ss_pred             cCCceEEEEEEec-CccccCCCCCcCCCcccEEEeceeeccc-----cCCCcccCCCccEEEE-EEE-eCCcchHHHHHc
Q 038991           92 MRDVRELELNIEN-QQRLELPESIYSCRSLEVLKLDYDFDIA-----VPVSGMCFPNLKFLRV-SLQ-YPENQLTEKLFS  163 (287)
Q Consensus        92 ~~~l~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----~~~~~~~~~~L~~L~L-~~~-~~~~~~l~~l~~  163 (287)
                      -+++++|++..+. .....++.....|++|++|+|++|.+.+     ++.....+++|+.|++ ++. ..+...+..+..
T Consensus       129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~  208 (594)
T 2p1m_B          129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT  208 (594)
T ss_dssp             CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred             CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence            3699999998663 2233355555578999999999987543     2212237889999999 775 223366888888


Q ss_pred             cCCccceEEeeeeeccCCCeeeEEEECCCcceEEEEEeeccc----------------------ccc-c-cCCcccEEEE
Q 038991          164 SCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDY----------------------NFA-F-NNFHHNCLIM  219 (287)
Q Consensus       164 ~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~----------------------~~~-~-~~~~~~~~i~  219 (287)
                      +||+|+.|++.+|....+ ...+....++|+.|.+..+....                      .+. . .+....+.-.
T Consensus       209 ~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~  287 (594)
T 2p1m_B          209 RCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV  287 (594)
T ss_dssp             HCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred             hCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence            999999999999922222 22223356899999866551000                      000 0 0000011114


Q ss_pred             cCccEEEEEEeccccc----eeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEec
Q 038991          220 APLLQLLHVVDDLMVS----YEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSS  281 (287)
Q Consensus       220 ap~L~~L~l~~~~~~~----~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~  281 (287)
                      .++|++|+++++....    ..+..+|+|+++++..+.      ....+..+.+.+++++.|.++.
T Consensus       288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~------~~~~l~~l~~~~~~L~~L~L~~  347 (594)
T 2p1m_B          288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI------EDAGLEVLASTCKDLRELRVFP  347 (594)
T ss_dssp             HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG------HHHHHHHHHHHCTTCCEEEEEC
T ss_pred             hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc------CHHHHHHHHHhCCCCCEEEEec
Confidence            6899999998886431    124588999999987441      1345677888899999999943

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.51  E-value=1.9e-08  Score=91.72  Aligned_cols=85  Identities=11%  Similarity=0.065  Sum_probs=44.5

Q ss_pred             CCcCCCcccEEEeceeecccc-CCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE-E
Q 038991          113 SIYSCRSLEVLKLDYDFDIAV-PVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII-S  189 (287)
Q Consensus       113 ~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i-~  189 (287)
                      .+..+++|++|+|+++.+... +.....+++|+.|+| +..+.+  .....+..+++|+.|++.++ ...+ .....+ .
T Consensus       123 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n-~i~~-~~~~~~~~  198 (477)
T 2id5_A          123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS--IPTEALSHLHGLIVLRLRHL-NINA-IRDYSFKR  198 (477)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS--CCHHHHTTCTTCCEEEEESC-CCCE-ECTTCSCS
T ss_pred             HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc--cChhHhcccCCCcEEeCCCC-cCcE-eChhhccc
Confidence            344455666666665544332 213345666777777 555432  22344666777777777776 4322 111111 2


Q ss_pred             CCCcceEEEEEe
Q 038991          190 SSTLKRFYWTVL  201 (287)
Q Consensus       190 ~~~Lk~L~l~~~  201 (287)
                      .++|+.|.+.++
T Consensus       199 l~~L~~L~l~~~  210 (477)
T 2id5_A          199 LYRLKVLEISHW  210 (477)
T ss_dssp             CTTCCEEEEECC
T ss_pred             CcccceeeCCCC
Confidence            356666666665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.51  E-value=4.3e-10  Score=96.66  Aligned_cols=177  Identities=14%  Similarity=0.156  Sum_probs=107.2

Q ss_pred             cCCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCC--CcccCCCccEEEE-EEEeCCcchHHHHHccCCcc
Q 038991           92 MRDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPV--SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSI  168 (287)
Q Consensus        92 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~L  168 (287)
                      ..++++|+++.+.  ...+|..+..+++|++|+++++.+...+.  ....+++|+.|++ +..+..  .....+.++++|
T Consensus        77 ~~~L~~L~Ls~n~--i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L  152 (306)
T 2z66_A           77 TTSLKYLDLSFNG--VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV--AFNGIFNGLSSL  152 (306)
T ss_dssp             CSCCCEEECCSCS--EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE--CSTTTTTTCTTC
T ss_pred             ccccCEEECCCCc--cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc--cchhhcccCcCC
Confidence            3577887776554  23455556667888888888877665442  4457788888888 654432  223346678888


Q ss_pred             ceEEeeeeeccCCC-eeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc---ceeeecCCCc
Q 038991          169 EELCLKVYLKYDGP-ATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV---SYEVHDLQFL  244 (287)
Q Consensus       169 e~L~l~~c~~~~~~-~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~---~~~~~~~p~L  244 (287)
                      +.|++.+| ...+. .....-..++|+.|.++++  ...    +......-..|+|++|+++++...   ...+..+++|
T Consensus       153 ~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n--~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  225 (306)
T 2z66_A          153 EVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC--QLE----QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL  225 (306)
T ss_dssp             CEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS--CCC----EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC
T ss_pred             CEEECCCC-ccccccchhHHhhCcCCCEEECCCC--CcC----CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC
Confidence            88888888 54320 0111113468888888877  321    100111123578889988887654   2246678888


Q ss_pred             eeEEEEEEEccccccChhhHHHHHhcC-CcceEEEEecCeeE
Q 038991          245 QTVNLAILFLQWSVLNPWEVVQLLNGI-LNCKSLTLSSGVIL  285 (287)
Q Consensus       245 ~~~~l~~~~~~~~~~~~~~~~~~l~~l-~~v~~L~l~~~~i~  285 (287)
                      +.+++..+.....      ....+..+ ++++.|+++.|.+.
T Consensus       226 ~~L~L~~N~l~~~------~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          226 QVLDYSLNHIMTS------KKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CEEECTTSCCCBC------SSSSCCCCCTTCCEEECTTCCEE
T ss_pred             CEeECCCCCCccc------CHHHHHhhhccCCEEEccCCCee
Confidence            8888764422111      11234555 48899999888764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.50  E-value=3.8e-09  Score=95.52  Aligned_cols=174  Identities=17%  Similarity=0.150  Sum_probs=93.1

Q ss_pred             CCceEEEEEEecCccccCCC-CCcCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991           93 RDVRELELNIENQQRLELPE-SIYSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE  169 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le  169 (287)
                      .++++|+|+.+.  ...++. .+..+++|++|+|+++.+..++. ....+++|+.|+| ++.... ..-...+.++++|+
T Consensus       112 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~-~i~~~~~~~l~~L~  188 (440)
T 3zyj_A          112 ANLNTLELFDNR--LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLR  188 (440)
T ss_dssp             SSCCEEECCSSC--CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC-EECTTTTTTCSSCC
T ss_pred             ccCCEEECCCCc--CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcc-eeCcchhhcccccC
Confidence            456666654433  223333 33445666777776665544332 2345667777766 533221 11112355677777


Q ss_pred             eEEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc---eeeecCCCcee
Q 038991          170 ELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS---YEVHDLQFLQT  246 (287)
Q Consensus       170 ~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~~  246 (287)
                      .|++.+| .... +..+ ...++|+.|+++++  ...    +......-..++|++|++.++....   ..+.++++|+.
T Consensus       189 ~L~L~~n-~l~~-~~~~-~~l~~L~~L~Ls~N--~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  259 (440)
T 3zyj_A          189 YLNLAMC-NLRE-IPNL-TPLIKLDELDLSGN--HLS----AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE  259 (440)
T ss_dssp             EEECTTS-CCSS-CCCC-TTCSSCCEEECTTS--CCC----EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCE
T ss_pred             eecCCCC-cCcc-cccc-CCCcccCEEECCCC--ccC----ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCE
Confidence            7777777 5544 3321 13457777777766  221    1001111135777777777766542   24556777777


Q ss_pred             EEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          247 VNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       247 ~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      +++..+... .     .....+..+++++.|+++.|.+
T Consensus       260 L~L~~N~l~-~-----~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          260 INLAHNNLT-L-----LPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             EECTTSCCC-C-----CCTTTTSSCTTCCEEECCSSCE
T ss_pred             EECCCCCCC-c-----cChhHhccccCCCEEEcCCCCc
Confidence            777543221 1     0124566778888888887765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.49  E-value=5.4e-09  Score=98.33  Aligned_cols=165  Identities=15%  Similarity=0.138  Sum_probs=87.5

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      ..+++|++..+.  ...++ .+..+++|+.|+|++|.+..++ ....+++|+.|+| +..+.+-.    -+..+++|+.|
T Consensus        43 ~~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L  114 (605)
T 1m9s_A           43 NSIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKIKDLS----SLKDLKKLKSL  114 (605)
T ss_dssp             TTCCCCBCTTCC--CCCCT-TGGGCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCT----TSTTCTTCCEE
T ss_pred             CCCCEEECcCCC--CCCCh-HHccCCCCCEEEeeCCCCCCCh-hhccCCCCCEEECcCCCCCCCh----hhccCCCCCEE
Confidence            455555554332  22233 3455666777777766655544 3556677777777 65554311    24566777777


Q ss_pred             EeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc-ceeeecCCCceeEEEE
Q 038991          172 CLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV-SYEVHDLQFLQTVNLA  250 (287)
Q Consensus       172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~-~~~~~~~p~L~~~~l~  250 (287)
                      +|++| ...+ +..+ ...++|+.|.+++|  ..    .+ . ...-..++|+.|+++++... ...+..+++|+.+++.
T Consensus       115 ~Ls~N-~l~~-l~~l-~~l~~L~~L~Ls~N--~l----~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls  183 (605)
T 1m9s_A          115 SLEHN-GISD-INGL-VHLPQLESLYLGNN--KI----TD-I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS  183 (605)
T ss_dssp             ECTTS-CCCC-CGGG-GGCTTCSEEECCSS--CC----CC-C-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             EecCC-CCCC-Cccc-cCCCccCEEECCCC--cc----CC-c-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECc
Confidence            77766 5443 2211 13456666666666  22    11 1 11113466777777666543 1235666677766665


Q ss_pred             EEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          251 ILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       251 ~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      .+... .      + .-+..+++++.|.++.+.|
T Consensus       184 ~N~i~-~------l-~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          184 KNHIS-D------L-RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             SSCCC-B------C-GGGTTCTTCSEEECCSEEE
T ss_pred             CCCCC-C------C-hHHccCCCCCEEEccCCcC
Confidence            43211 0      1 2356666777777766654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.49  E-value=2.1e-08  Score=96.97  Aligned_cols=155  Identities=14%  Similarity=0.097  Sum_probs=97.7

Q ss_pred             cCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCc
Q 038991          115 YSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTL  193 (287)
Q Consensus       115 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~L  193 (287)
                      ..+++|++|+|++|.+.........+++|+.|+| +..+.+  .+...+..+++|+.|++.+| ...+.....  ..++|
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~--~l~~L  271 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG--DFSRAISTCTELKLLNISSN-QFVGPIPPL--PLKSL  271 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS--CHHHHTTTCSSCCEEECCSS-CCEESCCCC--CCTTC
T ss_pred             ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC--cccHHHhcCCCCCEEECCCC-cccCccCcc--ccCCC
Confidence            5678888888888877553224667889999999 777653  35556788999999999998 554311122  56788


Q ss_pred             ceEEEEEeeccccccccCCcccEEEE-cCccEEEEEEecccc---ceeeecCCCceeEEEEEEEccccccChhhHHHHHh
Q 038991          194 KRFYWTVLVDDYNFAFNNFHHNCLIM-APLLQLLHVVDDLMV---SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLN  269 (287)
Q Consensus       194 k~L~l~~~~~~~~~~~~~~~~~~~i~-ap~L~~L~l~~~~~~---~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~  269 (287)
                      +.|.+.+|  ..    .+........ .++|++|+++++...   ...++++++|+.+++..+......     -...+.
T Consensus       272 ~~L~L~~n--~l----~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i-----p~~~l~  340 (768)
T 3rgz_A          272 QYLSLAEN--KF----TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL-----PMDTLL  340 (768)
T ss_dssp             CEEECCSS--EE----EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC-----CHHHHT
T ss_pred             CEEECcCC--cc----CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC-----CHHHHh
Confidence            88888887  21    1101111112 378888888777543   234667788888877644221010     123466


Q ss_pred             cCCcceEEEEecCeeE
Q 038991          270 GILNCKSLTLSSGVIL  285 (287)
Q Consensus       270 ~l~~v~~L~l~~~~i~  285 (287)
                      .+++++.|.++.+.+.
T Consensus       341 ~l~~L~~L~Ls~n~l~  356 (768)
T 3rgz_A          341 KMRGLKVLDLSFNEFS  356 (768)
T ss_dssp             TCTTCCEEECCSSEEE
T ss_pred             cCCCCCEEeCcCCccC
Confidence            6777777777766653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.47  E-value=3.5e-09  Score=91.94  Aligned_cols=58  Identities=16%  Similarity=0.037  Sum_probs=29.2

Q ss_pred             cCccEEEEEEeccccce---eeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          220 APLLQLLHVVDDLMVSY---EVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       220 ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      .++|++|+++++.....   .+..+++|+++++..+...       .+...+..+++++.|+++.|.|
T Consensus       215 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~lp~~l~~l~~L~~L~l~~N~i  275 (330)
T 1xku_A          215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-------KVPGGLADHKYIQVVYLHNNNI  275 (330)
T ss_dssp             CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-------SCCTTTTTCSSCCEEECCSSCC
T ss_pred             CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-------cCChhhccCCCcCEEECCCCcC
Confidence            35666666665544311   2445566666665433211       1112245566666666666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.46  E-value=1.8e-08  Score=97.45  Aligned_cols=148  Identities=17%  Similarity=0.183  Sum_probs=84.2

Q ss_pred             CCceEEEEEEecCccccCCC--CCcCCCcccEEEeceeeccc-cCCCc-ccCCCccEEEE-EEEeCCcch-HHHHHccCC
Q 038991           93 RDVRELELNIENQQRLELPE--SIYSCRSLEVLKLDYDFDIA-VPVSG-MCFPNLKFLRV-SLQYPENQL-TEKLFSSCP  166 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~-~~~~~-~~~~~L~~L~L-~~~~~~~~~-l~~l~~~cp  166 (287)
                      +++++|+|+.+... ..+|.  .+..+++|++|+|++|.+.. .|... ..+++|+.|+| +..+.+... ....+.+|+
T Consensus       100 ~~L~~L~Ls~n~l~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~  178 (768)
T 3rgz_A          100 ASLTSLDLSRNSLS-GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG  178 (768)
T ss_dssp             TTCCEEECCSSEEE-EEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred             CCCCEEECCCCcCC-CcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence            47777777654421 23444  56677888888888776643 22122 56788888888 666543111 112367788


Q ss_pred             ccceEEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc---ceeeecCCC
Q 038991          167 SIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV---SYEVHDLQF  243 (287)
Q Consensus       167 ~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~---~~~~~~~p~  243 (287)
                      +|+.|++.+| ...+ .... -..++|+.|+++++  ..    .+... ..-..++|++|+++++...   ...++++++
T Consensus       179 ~L~~L~Ls~n-~l~~-~~~~-~~l~~L~~L~Ls~n--~l----~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  248 (768)
T 3rgz_A          179 ELKHLAISGN-KISG-DVDV-SRCVNLEFLDVSSN--NF----STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTE  248 (768)
T ss_dssp             TCCEEECCSS-EEES-CCBC-TTCTTCCEEECCSS--CC----CSCCC-BCTTCCSCCEEECCSSCCCSCHHHHTTTCSS
T ss_pred             CCCEEECCCC-cccc-cCCc-ccCCcCCEEECcCC--cC----CCCCc-ccccCCCCCEEECcCCcCCCcccHHHhcCCC
Confidence            8888888887 5433 2211 24467777777776  22    22111 1223467777777666543   223455666


Q ss_pred             ceeEEEEE
Q 038991          244 LQTVNLAI  251 (287)
Q Consensus       244 L~~~~l~~  251 (287)
                      |+.+++..
T Consensus       249 L~~L~Ls~  256 (768)
T 3rgz_A          249 LKLLNISS  256 (768)
T ss_dssp             CCEEECCS
T ss_pred             CCEEECCC
Confidence            66666543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.46  E-value=5.2e-08  Score=89.74  Aligned_cols=175  Identities=13%  Similarity=0.091  Sum_probs=118.8

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccc-cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIA-VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE  170 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~  170 (287)
                      ..+++|+++.+.......   ...+++|++|+++++.+.. .|.....+++|+.|+| +..+.+-..+...+..+++|+.
T Consensus       302 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~  378 (520)
T 2z7x_B          302 MNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ  378 (520)
T ss_dssp             CCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCE
T ss_pred             CceeEEEcCCCccccccc---hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCE
Confidence            468888887654322111   1467899999999998766 4445678999999999 8877542345566889999999


Q ss_pred             EEeeeeeccCCCee-eEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce--eeecCCCceeE
Q 038991          171 LCLKVYLKYDGPAT-NFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY--EVHDLQFLQTV  247 (287)
Q Consensus       171 L~l~~c~~~~~~~~-~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~--~~~~~p~L~~~  247 (287)
                      |++++| ...+.+. ......++|+.|.++++  ...   ......+   .++|+.|+++++....+  .+..+++|+.+
T Consensus       379 L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~N--~l~---~~~~~~l---~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L  449 (520)
T 2z7x_B          379 LDISQN-SVSYDEKKGDCSWTKSLLSLNMSSN--ILT---DTIFRCL---PPRIKVLDLHSNKIKSIPKQVVKLEALQEL  449 (520)
T ss_dssp             EECCSS-CCBCCGGGCSCCCCTTCCEEECCSS--CCC---GGGGGSC---CTTCCEEECCSSCCCCCCGGGGGCTTCCEE
T ss_pred             EECCCC-cCCcccccchhccCccCCEEECcCC--CCC---cchhhhh---cccCCEEECCCCcccccchhhhcCCCCCEE
Confidence            999999 6543111 11224579999999998  321   0001111   27999999999876522  34588999999


Q ss_pred             EEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991          248 NLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       248 ~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      ++..+... ..  +.   ..+..+++++.|+++.|.+.
T Consensus       450 ~L~~N~l~-~l--~~---~~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          450 NVASNQLK-SV--PD---GIFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             ECCSSCCC-CC--CT---TTTTTCTTCCEEECCSSCBC
T ss_pred             ECCCCcCC-cc--CH---HHhccCCcccEEECcCCCCc
Confidence            98755322 11  11   25788999999999988763

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.46  E-value=4e-08  Score=87.28  Aligned_cols=168  Identities=14%  Similarity=0.129  Sum_probs=83.2

Q ss_pred             CCceEEEEEEecCccccCC-CCCcCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991           93 RDVRELELNIENQQRLELP-ESIYSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE  169 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le  169 (287)
                      +++++|+++.+..  ..++ ..+..+++|++|+|+++.+..+|.. ...+++|+.|+| +..+..  .....+..+++|+
T Consensus        93 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~  168 (390)
T 3o6n_A           93 HTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQ  168 (390)
T ss_dssp             TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTSSCTTCC
T ss_pred             CCcCEEECCCCCC--CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc--cChhhccCCCCCC
Confidence            3556666544332  2222 2334456666666666655554422 245666666666 544432  1112245566666


Q ss_pred             eEEeeeeeccCCCeeeEEE-ECCC-------------------cceEEEEEeeccccccccCCcccEE-EEcCccEEEEE
Q 038991          170 ELCLKVYLKYDGPATNFII-SSST-------------------LKRFYWTVLVDDYNFAFNNFHHNCL-IMAPLLQLLHV  228 (287)
Q Consensus       170 ~L~l~~c~~~~~~~~~l~i-~~~~-------------------Lk~L~l~~~~~~~~~~~~~~~~~~~-i~ap~L~~L~l  228 (287)
                      .|++.++ ...+ .   .+ ..++                   |+.|.+.++  ...        .+. ...++|+.|++
T Consensus       169 ~L~l~~n-~l~~-~---~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n--~l~--------~~~~~~~~~L~~L~l  233 (390)
T 3o6n_A          169 NLQLSSN-RLTH-V---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN--SIN--------VVRGPVNVELTILKL  233 (390)
T ss_dssp             EEECCSS-CCSB-C---CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSS--CCC--------EEECCCCSSCCEEEC
T ss_pred             EEECCCC-cCCc-c---ccccccccceeecccccccccCCCCcceEEECCCC--eee--------eccccccccccEEEC
Confidence            6666666 3322 1   00 1133                   333333333  110        000 01256777777


Q ss_pred             Eecccc-ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991          229 VDDLMV-SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       229 ~~~~~~-~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      .++... ...++.+++|+++++..+....      .....+..+++++.|.++.+.|.
T Consensus       234 ~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~  285 (390)
T 3o6n_A          234 QHNNLTDTAWLLNYPGLVEVDLSYNELEK------IMYHPFVKMQRLERLYISNNRLV  285 (390)
T ss_dssp             CSSCCCCCGGGGGCTTCSEEECCSSCCCE------EESGGGTTCSSCCEEECCSSCCC
T ss_pred             CCCCCcccHHHcCCCCccEEECCCCcCCC------cChhHccccccCCEEECCCCcCc
Confidence            666544 2345667777777775432110      11245667788888888877653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.44  E-value=8.9e-09  Score=95.78  Aligned_cols=51  Identities=18%  Similarity=0.101  Sum_probs=29.0

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV  148 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L  148 (287)
                      .++++|++..+.  ...+|..+..+ +|++|++++|.+..+|.  ..+++|+.|++
T Consensus       282 ~~L~~L~l~~~~--l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l  332 (570)
T 2z63_A          282 TNVSSFSLVSVT--IERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTF  332 (570)
T ss_dssp             TTCSEEEEESCE--ECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEE
T ss_pred             CcccEEEecCcc--chhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeC
Confidence            467777775543  23456555555 77777777766554441  34455555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.44  E-value=2.1e-09  Score=100.91  Aligned_cols=80  Identities=23%  Similarity=0.270  Sum_probs=39.3

Q ss_pred             CceEEEEEEecCccccCCCCCcCCCcccEEEeceeecccc-CCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAV-PVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      ++++|+++.+.  ...+|..+..+++|++|+++++.+... +.....+++|+.|++ +..+.. ......+..+++|+.|
T Consensus       279 ~L~~L~l~~n~--l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L  355 (606)
T 3t6q_A          279 GLQELDLTATH--LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL-ELGTGCLENLENLREL  355 (606)
T ss_dssp             TCSEEECTTSC--CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC-BCCSSTTTTCTTCCEE
T ss_pred             CCCEEeccCCc--cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc-ccchhhhhccCcCCEE
Confidence            45555544332  234555555556666666666654432 213345566666666 543321 1111124456666666


Q ss_pred             Eeeee
Q 038991          172 CLKVY  176 (287)
Q Consensus       172 ~l~~c  176 (287)
                      ++++|
T Consensus       356 ~l~~n  360 (606)
T 3t6q_A          356 DLSHD  360 (606)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            66666

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.41  E-value=1.2e-08  Score=86.09  Aligned_cols=171  Identities=13%  Similarity=0.121  Sum_probs=113.7

Q ss_pred             ceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEE
Q 038991           95 VRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELC  172 (287)
Q Consensus        95 l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~  172 (287)
                      .+.++++..  ....+|..+.  ++|++|+|+++.+..++. ....+++|+.|+| +..+..  ....++..+++|+.|+
T Consensus        18 ~~~l~~~~~--~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           18 KNSVDCSSK--KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTEEECTTS--CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC--CCTTTTSSCTTCCEEE
T ss_pred             CCEEEccCC--CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe--eChhhhcCCCCCCEEE
Confidence            445554322  2345565433  679999999998776653 4568999999999 876643  2234467899999999


Q ss_pred             eeeeeccCCCeeeEE-EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---eeecCCCceeEE
Q 038991          173 LKVYLKYDGPATNFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---EVHDLQFLQTVN  248 (287)
Q Consensus       173 l~~c~~~~~~~~~l~-i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~  248 (287)
                      +.++ ...+ ...-. -..++|+.|.+.++  ..    .+......-..++|++|+++++.....   .++.+++|++++
T Consensus        92 l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n--~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  163 (270)
T 2o6q_A           92 VTDN-KLQA-LPIGVFDQLVNLAELRLDRN--QL----KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR  163 (270)
T ss_dssp             CCSS-CCCC-CCTTTTTTCSSCCEEECCSS--CC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCC-cCCc-CCHhHcccccCCCEEECCCC--cc----CeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeE
Confidence            9999 6544 22111 13578999999988  32    221111122468999999999876532   367889999999


Q ss_pred             EEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991          249 LAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       249 l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      +..+... . ..    ...+.++++++.|+++.+.|+
T Consensus       164 L~~n~l~-~-~~----~~~~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          164 LYNNQLK-R-VP----EGAFDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             CCSSCCS-C-CC----TTTTTTCTTCCEEECCSSCCS
T ss_pred             ecCCcCc-E-eC----hhHhccCCCcCEEECCCCcCC
Confidence            8644221 1 11    134678899999999988663

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.41  E-value=3.5e-09  Score=94.01  Aligned_cols=163  Identities=12%  Similarity=0.090  Sum_probs=74.4

Q ss_pred             cCCCcccEEEeceeeccc-----cCCCcccCCCccEEEE-EEEeCCc--chHHHHHccC---------CccceEEeeeee
Q 038991          115 YSCRSLEVLKLDYDFDIA-----VPVSGMCFPNLKFLRV-SLQYPEN--QLTEKLFSSC---------PSIEELCLKVYL  177 (287)
Q Consensus       115 ~~~~~L~~L~L~~~~~~~-----~~~~~~~~~~L~~L~L-~~~~~~~--~~l~~l~~~c---------p~Le~L~l~~c~  177 (287)
                      ..+++|++|+|+++.+..     ++.....+++|+.|+| ++.+.+.  ..+...+..+         |+|+.|.+.+| 
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-  169 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-  169 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-
Confidence            345566666666654432     1112235566666666 5544321  1122233333         66666666666 


Q ss_pred             ccCCC-eeeE---EEECCCcceEEEEEeeccccccccCC--ccc-EEEEcCccEEEEEEecccc-------ceeeecCCC
Q 038991          178 KYDGP-ATNF---IISSSTLKRFYWTVLVDDYNFAFNNF--HHN-CLIMAPLLQLLHVVDDLMV-------SYEVHDLQF  243 (287)
Q Consensus       178 ~~~~~-~~~l---~i~~~~Lk~L~l~~~~~~~~~~~~~~--~~~-~~i~ap~L~~L~l~~~~~~-------~~~~~~~p~  243 (287)
                      ...+. ...+   --..++|+.|.+.+|  ...  ..+.  ... ..-..|+|+.|+++++...       ...+..+++
T Consensus       170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n--~l~--~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~  245 (386)
T 2ca6_A          170 RLENGSMKEWAKTFQSHRLLHTVKMVQN--GIR--PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN  245 (386)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSS--CCC--HHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred             CCCcHHHHHHHHHHHhCCCcCEEECcCC--CCC--HhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence            43210 1110   013456666666665  211  0000  000 1113466777777666541       123455666


Q ss_pred             ceeEEEEEEEccccccChhhHHHHHhc--CCcceEEEEecCee
Q 038991          244 LQTVNLAILFLQWSVLNPWEVVQLLNG--ILNCKSLTLSSGVI  284 (287)
Q Consensus       244 L~~~~l~~~~~~~~~~~~~~~~~~l~~--l~~v~~L~l~~~~i  284 (287)
                      |+.+++..+....  .....+.+.++.  +++++.|.++.|.|
T Consensus       246 L~~L~L~~n~i~~--~~~~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          246 LRELGLNDCLLSA--RGAAAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             CCEEECTTCCCCH--HHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             cCEEECCCCCCch--hhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence            7766664332100  001123455544  77777777777655

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.41  E-value=5.4e-09  Score=79.99  Aligned_cols=104  Identities=20%  Similarity=0.117  Sum_probs=70.0

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      .++++|+++.+......+|..+..+++|++|++++|.+...+ ....+++|+.|+| +..+.+  .+...+..+|+|+.|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-NLPKLNKLKKLELSDNRVSG--GLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCT-TCCCCTTCCEEECCSSCCCS--CTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCch-hhhcCCCCCEEECCCCcccc--hHHHHhhhCCCCCEE
Confidence            468888876654322367777777888999999888776653 5667888999988 777654  255667778889999


Q ss_pred             EeeeeeccCCCee--eEEEECCCcceEEEEEe
Q 038991          172 CLKVYLKYDGPAT--NFIISSSTLKRFYWTVL  201 (287)
Q Consensus       172 ~l~~c~~~~~~~~--~l~i~~~~Lk~L~l~~~  201 (287)
                      ++++| ...+ ..  ...-..++|+.|.++++
T Consensus        94 ~ls~N-~i~~-~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           94 NLSGN-KIKD-LSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             ECTTS-CCCS-HHHHGGGGGCTTCCEEECTTC
T ss_pred             ECCCC-cCCC-hHHHHHHhhCCCCCEEeCcCC
Confidence            99888 6544 21  11112355555555555

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.40  E-value=4.8e-09  Score=95.18  Aligned_cols=150  Identities=16%  Similarity=0.113  Sum_probs=73.6

Q ss_pred             CCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE----E
Q 038991          116 SCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII----S  189 (287)
Q Consensus       116 ~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i----~  189 (287)
                      .+++|++|+|+++.+..++.. ...+++|+.|+| +..+..  .....+..+|+|+.|++.+| ..   ...+..    .
T Consensus       121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~~-~~---l~~i~~~~~~~  194 (452)
T 3zyi_A          121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES--IPSYAFNRVPSLMRLDLGEL-KK---LEYISEGAFEG  194 (452)
T ss_dssp             TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE--ECTTTTTTCTTCCEEECCCC-TT---CCEECTTTTTT
T ss_pred             CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce--eCHhHHhcCCcccEEeCCCC-CC---ccccChhhccC
Confidence            345555555555544333321 224555555555 443321  11122444555555555554 21   111111    2


Q ss_pred             CCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc---eeeecCCCceeEEEEEEEccccccChhhHHH
Q 038991          190 SSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS---YEVHDLQFLQTVNLAILFLQWSVLNPWEVVQ  266 (287)
Q Consensus       190 ~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~  266 (287)
                      .++|+.|.++++  ..    .+ . ......++|++|+++++....   ..+.++++|+.+++..+....      ....
T Consensus       195 l~~L~~L~L~~n--~l----~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~  260 (452)
T 3zyi_A          195 LFNLKYLNLGMC--NI----KD-M-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL------IERN  260 (452)
T ss_dssp             CTTCCEEECTTS--CC----SS-C-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE------ECTT
T ss_pred             CCCCCEEECCCC--cc----cc-c-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce------ECHH
Confidence            345666666555  21    11 0 111234677777777765542   245667777777765332110      0124


Q ss_pred             HHhcCCcceEEEEecCeeE
Q 038991          267 LLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       267 ~l~~l~~v~~L~l~~~~i~  285 (287)
                      .+.++++++.|+++.|.|.
T Consensus       261 ~~~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          261 AFDGLASLVELNLAHNNLS  279 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCS
T ss_pred             HhcCCCCCCEEECCCCcCC
Confidence            4677889999999887653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.40  E-value=5.9e-09  Score=97.88  Aligned_cols=51  Identities=18%  Similarity=0.044  Sum_probs=26.5

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV  148 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L  148 (287)
                      .++++|++..+..  ..+| .+..+++|++|++++|.+..+| .. .+++|+.|++
T Consensus       285 ~~L~~L~l~~~~~--~~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l  335 (606)
T 3vq2_A          285 ANVSAMSLAGVSI--KYLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTL  335 (606)
T ss_dssp             TTCSEEEEESCCC--CCCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEE
T ss_pred             CCCCEEEecCccc--hhhh-hccccccCCEEEcccccCcccc-cC-CCCccceeec
Confidence            4666666655432  2333 3444556666666666554444 22 4555555555

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.40  E-value=1.1e-08  Score=85.48  Aligned_cols=147  Identities=18%  Similarity=0.151  Sum_probs=67.6

Q ss_pred             CceEEEEEEecCccccC-CCCCcCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991           94 DVRELELNIENQQRLEL-PESIYSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE  170 (287)
Q Consensus        94 ~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~  170 (287)
                      .++.|++..+..  ..+ +..+..+++|++|+|+++.+...+.. ...+++|+.|+| +..+..  .....+..+++|+.
T Consensus        36 ~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~  111 (251)
T 3m19_A           36 DTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS--LPLGVFDHLTQLDK  111 (251)
T ss_dssp             TCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCE
T ss_pred             CCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc--cChhHhcccCCCCE
Confidence            455555543322  122 22334456666666666655443322 345666666666 544432  11123455666666


Q ss_pred             EEeeeeeccCCCeeeEE-EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---eeecCCCcee
Q 038991          171 LCLKVYLKYDGPATNFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---EVHDLQFLQT  246 (287)
Q Consensus       171 L~l~~c~~~~~~~~~l~-i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~  246 (287)
                      |++.++ ...+ ...-. -..++|+.|.++++  ..    .+......-..++|+.|+++++.....   .+..+++|+.
T Consensus       112 L~L~~N-~l~~-~~~~~~~~l~~L~~L~Ls~N--~l----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  183 (251)
T 3m19_A          112 LYLGGN-QLKS-LPSGVFDRLTKLKELRLNTN--QL----QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT  183 (251)
T ss_dssp             EECCSS-CCCC-CCTTTTTTCTTCCEEECCSS--CC----CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             EEcCCC-cCCC-cChhHhccCCcccEEECcCC--cC----CccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence            666666 4332 21111 12355666666555  21    110000111235666666665544311   2445556666


Q ss_pred             EEEEEE
Q 038991          247 VNLAIL  252 (287)
Q Consensus       247 ~~l~~~  252 (287)
                      +++..+
T Consensus       184 L~l~~N  189 (251)
T 3m19_A          184 ITLFGN  189 (251)
T ss_dssp             EECCSC
T ss_pred             EEeeCC
Confidence            655544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.39  E-value=1.4e-09  Score=101.33  Aligned_cols=155  Identities=17%  Similarity=0.145  Sum_probs=81.7

Q ss_pred             CCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeee-EEEECCCc
Q 038991          116 SCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATN-FIISSSTL  193 (287)
Q Consensus       116 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~-l~i~~~~L  193 (287)
                      .+++|++|++++|.+...+.....+++|+.|++ +..+.+ ......+.++++|+.|++.+| ...+ ... .--..++|
T Consensus       371 ~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L  447 (570)
T 2z63_A          371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHT-HTRV-AFNGIFNGLSSL  447 (570)
T ss_dssp             TCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES-CTTSCTTTTCTTCCEEECTTS-CCEE-CCTTTTTTCTTC
T ss_pred             ccCccCEEECCCCccccccccccccCCCCEEEccCCcccc-ccchhhhhcCCCCCEEeCcCC-cccc-cchhhhhcCCcC
Confidence            445555555555544333323445666666666 544432 111123456677777777766 3321 100 00124577


Q ss_pred             ceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc---eeeecCCCceeEEEEEEEccccccChhhHHHHHhc
Q 038991          194 KRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS---YEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNG  270 (287)
Q Consensus       194 k~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~  270 (287)
                      +.|.+.+|  ...   ++......-..|+|++|+++++....   ..++.+++|+.+++..+... ..     ....+..
T Consensus       448 ~~L~l~~n--~l~---~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~-----~~~~~~~  516 (570)
T 2z63_A          448 EVLKMAGN--SFQ---ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SV-----PDGIFDR  516 (570)
T ss_dssp             CEEECTTC--EEG---GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CC-----CTTTTTT
T ss_pred             cEEECcCC--cCc---cccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC-CC-----CHHHhhc
Confidence            77777766  210   01011112235788888888776542   24567788888877644211 10     1235677


Q ss_pred             CCcceEEEEecCee
Q 038991          271 ILNCKSLTLSSGVI  284 (287)
Q Consensus       271 l~~v~~L~l~~~~i  284 (287)
                      +++++.|+++.|.+
T Consensus       517 l~~L~~L~l~~N~~  530 (570)
T 2z63_A          517 LTSLQKIWLHTNPW  530 (570)
T ss_dssp             CTTCCEEECCSSCB
T ss_pred             ccCCcEEEecCCcc
Confidence            88888888888765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.39  E-value=4.6e-08  Score=84.82  Aligned_cols=172  Identities=15%  Similarity=0.127  Sum_probs=115.0

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      .++++|+++.+... ...|..+..+++|++|+|+++.+..+|..  .+++|+.|++ +..+..  .....+.++++|+.|
T Consensus        76 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~--~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L  150 (330)
T 1xku_A           76 KNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEK--MPKTLQELRVHENEITK--VRKSVFNGLNQMIVV  150 (330)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCSS--CCTTCCEEECCSSCCCB--BCHHHHTTCTTCCEE
T ss_pred             CCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECCCCcCCccChh--hcccccEEECCCCcccc--cCHhHhcCCccccEE
Confidence            57888888655432 22355666778899999998877666522  3488999999 776643  334567889999999


Q ss_pred             EeeeeeccCCC-eee-EEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc---eeeecCCCcee
Q 038991          172 CLKVYLKYDGP-ATN-FIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS---YEVHDLQFLQT  246 (287)
Q Consensus       172 ~l~~c~~~~~~-~~~-l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~~  246 (287)
                      ++.++ ..... ... .--..++|+.|.+.++  ...    .....+   .++|++|+++++....   ..+..+++|+.
T Consensus       151 ~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n--~l~----~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  220 (330)
T 1xku_A          151 ELGTN-PLKSSGIENGAFQGMKKLSYIRIADT--NIT----TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAK  220 (330)
T ss_dssp             ECCSS-CCCGGGBCTTGGGGCTTCCEEECCSS--CCC----SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCE
T ss_pred             ECCCC-cCCccCcChhhccCCCCcCEEECCCC--ccc----cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence            99998 54310 000 0113578999999888  321    111111   2899999999887652   35678899999


Q ss_pred             EEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991          247 VNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       247 ~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      +++..+.....      ....+..+++++.|+++.+.|.
T Consensus       221 L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          221 LGLSFNSISAV------DNGSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             EECCSSCCCEE------CTTTGGGSTTCCEEECCSSCCS
T ss_pred             EECCCCcCcee------ChhhccCCCCCCEEECCCCcCc
Confidence            99865422110      1135678999999999988663

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.38  E-value=8.2e-09  Score=89.07  Aligned_cols=82  Identities=17%  Similarity=0.123  Sum_probs=44.6

Q ss_pred             cCCceEEEEEEecCccccCCCCC--cCCCcccEEEeceeeccccCCCcccC-----CCccEEEE-EEEeCCcchHHHHHc
Q 038991           92 MRDVRELELNIENQQRLELPESI--YSCRSLEVLKLDYDFDIAVPVSGMCF-----PNLKFLRV-SLQYPENQLTEKLFS  163 (287)
Q Consensus        92 ~~~l~~L~l~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~~~~~~~-----~~L~~L~L-~~~~~~~~~l~~l~~  163 (287)
                      -.++++|+++.+... ..+|..+  ...++|++|+|+++.+...|.....+     ++|+.|+| +..+.+-  ....+.
T Consensus        94 l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~--~~~~~~  170 (312)
T 1wwl_A           94 ISGLQELTLENLEVT-GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF--SCEQVR  170 (312)
T ss_dssp             TSCCCEEEEEEEBCB-SCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC--CTTTCC
T ss_pred             cCCccEEEccCCccc-chhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc--hHHHhc
Confidence            468888888776542 2345444  55677888888777665443222233     66666666 5444321  111233


Q ss_pred             cCCccceEEeeee
Q 038991          164 SCPSIEELCLKVY  176 (287)
Q Consensus       164 ~cp~Le~L~l~~c  176 (287)
                      .+++|+.|+++++
T Consensus       171 ~l~~L~~L~Ls~N  183 (312)
T 1wwl_A          171 VFPALSTLDLSDN  183 (312)
T ss_dssp             CCSSCCEEECCSC
T ss_pred             cCCCCCEEECCCC
Confidence            4455555555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.38  E-value=6.3e-08  Score=82.70  Aligned_cols=142  Identities=18%  Similarity=0.097  Sum_probs=96.0

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      .++++|+++.+..  ..++. +..+++|++|.|+++.+..++ ....+++|+.|+| +..+.+-.    -+..+++|+.|
T Consensus        68 ~~L~~L~L~~n~l--~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~i~~~~----~l~~l~~L~~L  139 (291)
T 1h6t_A           68 PNVTKLFLNGNKL--TDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISDIN----GLVHLPQLESL  139 (291)
T ss_dssp             TTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCCCG----GGGGCTTCCEE
T ss_pred             CCCCEEEccCCcc--CCCcc-cccCCCCCEEECCCCcCCCCh-hhccCCCCCEEECCCCcCCCCh----hhcCCCCCCEE
Confidence            5788888866543  23333 667788888988888776665 5667888888888 77665522    25678888888


Q ss_pred             EeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc-eeeecCCCceeEEEE
Q 038991          172 CLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS-YEVHDLQFLQTVNLA  250 (287)
Q Consensus       172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~-~~~~~~p~L~~~~l~  250 (287)
                      ++++| ...+ ... --..++|+.|.++++  ..    .+ ... .-..++|+.|+++++.... ..+..+++|+.+++.
T Consensus       140 ~l~~n-~l~~-~~~-l~~l~~L~~L~L~~N--~l----~~-~~~-l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~  208 (291)
T 1h6t_A          140 YLGNN-KITD-ITV-LSRLTKLDTLSLEDN--QI----SD-IVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF  208 (291)
T ss_dssp             ECCSS-CCCC-CGG-GGGCTTCSEEECCSS--CC----CC-CGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEE
T ss_pred             EccCC-cCCc-chh-hccCCCCCEEEccCC--cc----cc-chh-hcCCCccCEEECCCCcCCCChhhccCCCCCEEECc
Confidence            88888 6554 321 113578888888887  32    22 112 2245788888888876552 246778888888887


Q ss_pred             EEE
Q 038991          251 ILF  253 (287)
Q Consensus       251 ~~~  253 (287)
                      .+.
T Consensus       209 ~n~  211 (291)
T 1h6t_A          209 SQE  211 (291)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.38  E-value=2.8e-08  Score=91.19  Aligned_cols=94  Identities=19%  Similarity=0.186  Sum_probs=57.5

Q ss_pred             CceEEEEEEecCccccC-CCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           94 DVRELELNIENQQRLEL-PESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        94 ~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      ++++|+|+.+..  ..+ |..+..+++|++|+|++|.+...+ ....+++|+.|+| +..+.+       +..+|+|+.|
T Consensus        35 ~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~-------l~~~~~L~~L  104 (487)
T 3oja_A           35 NVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQE-------LLVGPSIETL  104 (487)
T ss_dssp             GCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCCEEEE-ECTTCTTCCEEECCSSEEEE-------EEECTTCCEE
T ss_pred             CccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCCCCCc-ccccCCCCCEEEecCCcCCC-------CCCCCCcCEE
Confidence            677787766543  223 334556678888888887665443 3557788888888 666543       2234777777


Q ss_pred             EeeeeeccCCCeeeEEEECCCcceEEEEEe
Q 038991          172 CLKVYLKYDGPATNFIISSSTLKRFYWTVL  201 (287)
Q Consensus       172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~  201 (287)
                      ++.+| ...+ ...  -..++|+.|.++++
T Consensus       105 ~L~~N-~l~~-~~~--~~l~~L~~L~L~~N  130 (487)
T 3oja_A          105 HAANN-NISR-VSC--SRGQGKKNIYLANN  130 (487)
T ss_dssp             ECCSS-CCCC-EEE--CCCSSCEEEECCSS
T ss_pred             ECcCC-cCCC-CCc--cccCCCCEEECCCC
Confidence            77777 5443 211  12356666666666

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.37  E-value=2.1e-09  Score=100.95  Aligned_cols=59  Identities=19%  Similarity=0.127  Sum_probs=24.9

Q ss_pred             CCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991          117 CRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY  176 (287)
Q Consensus       117 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c  176 (287)
                      +++|++|++++|.+...+.....+++|+.|++ +..+.+. .-...+..+++|+.|++.+|
T Consensus       375 ~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n  434 (606)
T 3vq2_A          375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV-TEFSAFLSLEKLLYLDISYT  434 (606)
T ss_dssp             CSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEEST-TTTTTTTTCTTCCEEECTTS
T ss_pred             CCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCc-cChhhhhccccCCEEECcCC
Confidence            34444444444433333323334555555555 4443321 00012344555555555555

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.37  E-value=5.2e-08  Score=89.37  Aligned_cols=146  Identities=12%  Similarity=0.054  Sum_probs=100.2

Q ss_pred             cCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCC
Q 038991          115 YSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSST  192 (287)
Q Consensus       115 ~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~  192 (287)
                      ..+++|++|+|+++.+...++ ....+++|+.|+| +..+.+...    +..+|+|+.|+|++| ...+    +. ..++
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N-~l~~----l~-~~~~  100 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNN-YVQE----LL-VGPS  100 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSS-EEEE----EE-ECTT
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCC-cCCC----CC-CCCC
Confidence            345689999999998876542 4568999999999 876653222    788999999999999 6443    32 3489


Q ss_pred             cceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc---ceeeecCCCceeEEEEEEEccccccChhhHHHHHh
Q 038991          193 LKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV---SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLN  269 (287)
Q Consensus       193 Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~---~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~  269 (287)
                      |+.|.+++|  ..    .+   ...-..|+|+.|+++++...   ...++.+++|+.++++.+...     ......+..
T Consensus       101 L~~L~L~~N--~l----~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~l~~  166 (487)
T 3oja_A          101 IETLHAANN--NI----SR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-----TVNFAELAA  166 (487)
T ss_dssp             CCEEECCSS--CC----CC---EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC-----EEEGGGGGG
T ss_pred             cCEEECcCC--cC----CC---CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC-----CcChHHHhh
Confidence            999999998  32    22   11113488999999888754   335677888888887643221     111223444


Q ss_pred             cCCcceEEEEecCee
Q 038991          270 GILNCKSLTLSSGVI  284 (287)
Q Consensus       270 ~l~~v~~L~l~~~~i  284 (287)
                      .+++++.|+++.|.|
T Consensus       167 ~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          167 SSDTLEHLNLQYNFI  181 (487)
T ss_dssp             GTTTCCEEECTTSCC
T ss_pred             hCCcccEEecCCCcc
Confidence            667777777776655

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.37  E-value=5.1e-08  Score=80.59  Aligned_cols=102  Identities=8%  Similarity=0.040  Sum_probs=58.2

Q ss_pred             CCceEEEEEEecCccccCCC-CCcCCCcccEEEeceee-ccccCC-CcccCCCccEEEE-EE-EeCCcchHHHHHccCCc
Q 038991           93 RDVRELELNIENQQRLELPE-SIYSCRSLEVLKLDYDF-DIAVPV-SGMCFPNLKFLRV-SL-QYPENQLTEKLFSSCPS  167 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~-~~~~~~-~~~~~~~L~~L~L-~~-~~~~~~~l~~l~~~cp~  167 (287)
                      ..+++|++..+..  ..+|. .+..+++|++|+++++. +..++. ....+++|+.|+| ++ .+..  .-...+.++++
T Consensus        31 ~~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~--i~~~~f~~l~~  106 (239)
T 2xwt_C           31 PSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY--IDPDALKELPL  106 (239)
T ss_dssp             TTCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE--ECTTSEECCTT
T ss_pred             CcccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE--cCHHHhCCCCC
Confidence            3677777765542  33443 34456778888887775 544442 3456778888888 63 2221  11123566778


Q ss_pred             cceEEeeeeeccCCCeeeEEEECCCcc---eEEEEEe
Q 038991          168 IEELCLKVYLKYDGPATNFIISSSTLK---RFYWTVL  201 (287)
Q Consensus       168 Le~L~l~~c~~~~~~~~~l~i~~~~Lk---~L~l~~~  201 (287)
                      |+.|++.+| ...+ +.. --..++|+   .|.+.++
T Consensus       107 L~~L~l~~n-~l~~-lp~-~~~l~~L~~L~~L~l~~N  140 (239)
T 2xwt_C          107 LKFLGIFNT-GLKM-FPD-LTKVYSTDIFFILEITDN  140 (239)
T ss_dssp             CCEEEEEEE-CCCS-CCC-CTTCCBCCSEEEEEEESC
T ss_pred             CCEEeCCCC-CCcc-ccc-cccccccccccEEECCCC
Confidence            888888877 5544 333 11234455   6666655

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.36  E-value=3.5e-08  Score=92.79  Aligned_cols=141  Identities=18%  Similarity=0.103  Sum_probs=82.7

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      .++++|+|+.+..  ..+++ +..+++|+.|.|++|.+..++ ....+++|+.|+| +..+.+-.    -+..||+|+.|
T Consensus        65 ~~L~~L~Ls~N~l--~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L  136 (605)
T 1m9s_A           65 PNVTKLFLNGNKL--TDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN----GLVHLPQLESL  136 (605)
T ss_dssp             TTCCEEECTTSCC--CCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG----GGGGCTTCSEE
T ss_pred             CCCCEEEeeCCCC--CCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc----cccCCCccCEE
Confidence            5677777654432  22332 556677777777777665555 5566777777777 66655421    25567777777


Q ss_pred             EeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc-eeeecCCCceeEEEE
Q 038991          172 CLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS-YEVHDLQFLQTVNLA  250 (287)
Q Consensus       172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~-~~~~~~p~L~~~~l~  250 (287)
                      .|++| ...+ ...+ -..++|+.|.+++|  ..    .+ ... .-..|+|+.|+++++.... ..+..+++|+.+++.
T Consensus       137 ~Ls~N-~l~~-l~~l-~~l~~L~~L~Ls~N--~l----~~-~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~  205 (605)
T 1m9s_A          137 YLGNN-KITD-ITVL-SRLTKLDTLSLEDN--QI----SD-IVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF  205 (605)
T ss_dssp             ECCSS-CCCC-CGGG-GSCTTCSEEECCSS--CC----CC-CGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECC
T ss_pred             ECCCC-ccCC-chhh-cccCCCCEEECcCC--cC----CC-chh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEcc
Confidence            77777 5544 3111 13467777777776  22    22 111 2235677777777765442 245667777777766


Q ss_pred             EE
Q 038991          251 IL  252 (287)
Q Consensus       251 ~~  252 (287)
                      .+
T Consensus       206 ~N  207 (605)
T 1m9s_A          206 SQ  207 (605)
T ss_dssp             SE
T ss_pred             CC
Confidence            44

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.36  E-value=2.8e-08  Score=85.91  Aligned_cols=95  Identities=19%  Similarity=0.181  Sum_probs=49.6

Q ss_pred             CCceEEEEEEecCccccCC-CCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991           93 RDVRELELNIENQQRLELP-ESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE  170 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~  170 (287)
                      .++++|+++.+..  ..++ ..+..+++|++|+|+++.+...+ ....+++|+.|+| +..+.+       +..+|+|+.
T Consensus        34 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~-------l~~~~~L~~  103 (317)
T 3o53_A           34 WNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQE-------LLVGPSIET  103 (317)
T ss_dssp             GGCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEE-EETTCTTCCEEECCSSEEEE-------EEECTTCCE
T ss_pred             CCCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcch-hhhhcCCCCEEECcCCcccc-------ccCCCCcCE
Confidence            3566666654432  1222 23445566777777776554433 2456677777777 555543       223466666


Q ss_pred             EEeeeeeccCCCeeeEEEECCCcceEEEEEe
Q 038991          171 LCLKVYLKYDGPATNFIISSSTLKRFYWTVL  201 (287)
Q Consensus       171 L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~  201 (287)
                      |.+.+| ...+ ..  .-..++|+.|.++++
T Consensus       104 L~l~~n-~l~~-~~--~~~~~~L~~L~l~~N  130 (317)
T 3o53_A          104 LHAANN-NISR-VS--CSRGQGKKNIYLANN  130 (317)
T ss_dssp             EECCSS-CCSE-EE--ECCCSSCEEEECCSS
T ss_pred             EECCCC-ccCC-cC--ccccCCCCEEECCCC
Confidence            666666 4322 11  112345555555555

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.36  E-value=1.4e-08  Score=85.88  Aligned_cols=151  Identities=15%  Similarity=0.148  Sum_probs=108.3

Q ss_pred             CCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEE-EECCCc
Q 038991          116 SCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFI-ISSSTL  193 (287)
Q Consensus       116 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~-i~~~~L  193 (287)
                      ..++|+.|.++++....++ ....+++|+.|+| +..+.+-.    .+..+++|+.|++.+| ...+ ...-. -..++|
T Consensus        39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L  111 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS----ALKELTNLTYLILTGN-QLQS-LPNGVFDKLTNL  111 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG----GGTTCTTCCEEECTTS-CCCC-CCTTTTTTCTTC
T ss_pred             cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch----hhcCCCCCCEEECCCC-ccCc-cChhHhcCCcCC
Confidence            4577999999999877666 6778999999999 88776522    4678999999999999 6554 22211 135799


Q ss_pred             ceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---eeecCCCceeEEEEEEEccccccChhhHHHHHhc
Q 038991          194 KRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---EVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNG  270 (287)
Q Consensus       194 k~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~  270 (287)
                      +.|.+.++  ..    .+......-..++|++|+++++.....   .++.+++|+.+++..+... ..     ....+..
T Consensus       112 ~~L~L~~n--~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~-----~~~~~~~  179 (272)
T 3rfs_A          112 KELVLVEN--QL----QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SL-----PEGVFDK  179 (272)
T ss_dssp             CEEECTTS--CC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CC-----CTTTTTT
T ss_pred             CEEECCCC--cC----CccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-cc-----CHHHhcC
Confidence            99999988  32    221111222468999999999876532   2578899999998755321 11     1245778


Q ss_pred             CCcceEEEEecCeeE
Q 038991          271 ILNCKSLTLSSGVIL  285 (287)
Q Consensus       271 l~~v~~L~l~~~~i~  285 (287)
                      +++++.|.++.|.|.
T Consensus       180 l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          180 LTQLKDLRLYQNQLK  194 (272)
T ss_dssp             CTTCCEEECCSSCCS
T ss_pred             CccCCEEECCCCcCC
Confidence            999999999988763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.35  E-value=5.6e-09  Score=94.43  Aligned_cols=150  Identities=15%  Similarity=0.116  Sum_probs=75.5

Q ss_pred             CCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE----E
Q 038991          116 SCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII----S  189 (287)
Q Consensus       116 ~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i----~  189 (287)
                      .+++|++|+|+++.+..++. ....+++|+.|+| +..+..  .....+..+++|+.|++.+| ..   ...+..    .
T Consensus       110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~l~~~-~~---l~~i~~~~~~~  183 (440)
T 3zyj_A          110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES--IPSYAFNRIPSLRRLDLGEL-KR---LSYISEGAFEG  183 (440)
T ss_dssp             TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE--ECTTTTTTCTTCCEEECCCC-TT---CCEECTTTTTT
T ss_pred             CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc--cCHHHhhhCcccCEeCCCCC-CC---cceeCcchhhc
Confidence            34555555555555444332 2334555666655 443321  11123445566666666555 21   111111    2


Q ss_pred             CCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc---eeeecCCCceeEEEEEEEccccccChhhHHH
Q 038991          190 SSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS---YEVHDLQFLQTVNLAILFLQWSVLNPWEVVQ  266 (287)
Q Consensus       190 ~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~  266 (287)
                      .++|+.|.++++  ..    .. . ......++|++|+++++....   ..+.++++|+++++..+....      ....
T Consensus       184 l~~L~~L~L~~n--~l----~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~  249 (440)
T 3zyj_A          184 LSNLRYLNLAMC--NL----RE-I-PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV------IERN  249 (440)
T ss_dssp             CSSCCEEECTTS--CC----SS-C-CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE------ECTT
T ss_pred             ccccCeecCCCC--cC----cc-c-cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE------EChh
Confidence            345666666555  21    11 0 111234677777777765442   245567777777765332110      0124


Q ss_pred             HHhcCCcceEEEEecCeeE
Q 038991          267 LLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       267 ~l~~l~~v~~L~l~~~~i~  285 (287)
                      .+.++++++.|+++.|.|.
T Consensus       250 ~~~~l~~L~~L~L~~N~l~  268 (440)
T 3zyj_A          250 AFDNLQSLVEINLAHNNLT  268 (440)
T ss_dssp             SSTTCTTCCEEECTTSCCC
T ss_pred             hhcCCCCCCEEECCCCCCC
Confidence            4677888999998887654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.35  E-value=9e-08  Score=89.91  Aligned_cols=176  Identities=14%  Similarity=0.098  Sum_probs=81.3

Q ss_pred             CCceEEEEEEecCccccCCC-CCcCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991           93 RDVRELELNIENQQRLELPE-SIYSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE  169 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le  169 (287)
                      ..++.|+|+.+.  ...+|+ .+..+++|++|+|++|.+..+|.. ...+++|+.|+| +..+.+  .....+.++++|+
T Consensus        99 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~  174 (597)
T 3oja_B           99 HTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQ  174 (597)
T ss_dssp             TTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCC
T ss_pred             CCCCEEECCCCc--CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC--CChhhhhcCCcCc
Confidence            355555554433  122322 234455666666666655444422 245566666666 544432  1112244566666


Q ss_pred             eEEeeeeeccCCCeeeEEEECCCcceEEEEEeecccc-c---------cccCC-cccEE-EEcCccEEEEEEecccc-ce
Q 038991          170 ELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYN-F---------AFNNF-HHNCL-IMAPLLQLLHVVDDLMV-SY  236 (287)
Q Consensus       170 ~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~-~---------~~~~~-~~~~~-i~ap~L~~L~l~~~~~~-~~  236 (287)
                      .|++.+| ...+ ..  .-..++|+.|.+.++  ... +         .+.+. ...+. ...++|+.|++.++... ..
T Consensus       175 ~L~L~~N-~l~~-~~--~~~l~~L~~L~l~~n--~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~  248 (597)
T 3oja_B          175 NLQLSSN-RLTH-VD--LSLIPSLFHANVSYN--LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA  248 (597)
T ss_dssp             EEECTTS-CCSB-CC--GGGCTTCSEEECCSS--CCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCG
T ss_pred             EEECcCC-CCCC-cC--hhhhhhhhhhhcccC--ccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCCh
Confidence            6666665 3322 10  001233333333322  100 0         00000 00000 01246667776666544 23


Q ss_pred             eeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          237 EVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       237 ~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      .++.+++|+.+++..+....      .....+.++++++.|.++.|.|
T Consensus       249 ~l~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~Ls~N~l  290 (597)
T 3oja_B          249 WLLNYPGLVEVDLSYNELEK------IMYHPFVKMQRLERLYISNNRL  290 (597)
T ss_dssp             GGGGCTTCSEEECCSSCCCE------EESGGGTTCSSCCEEECTTSCC
T ss_pred             hhccCCCCCEEECCCCccCC------CCHHHhcCccCCCEEECCCCCC
Confidence            45677788877775432210      1124466788888888887765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.34  E-value=3.4e-08  Score=93.54  Aligned_cols=135  Identities=10%  Similarity=-0.007  Sum_probs=74.0

Q ss_pred             cCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEE-C-------CCcceEEEEEeeccccccc
Q 038991          139 CFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIIS-S-------STLKRFYWTVLVDDYNFAF  209 (287)
Q Consensus       139 ~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~-~-------~~Lk~L~l~~~~~~~~~~~  209 (287)
                      .+++|+.|+| +..+..  .-..++..+++|+.|++.+| .... +..-... .       ++|+.|.++++  ..    
T Consensus       431 ~~~~L~~L~Ls~N~l~~--lp~~~~~~l~~L~~L~Ls~N-~l~~-i~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l----  500 (636)
T 4eco_A          431 KGINVSSINLSNNQISK--FPKELFSTGSPLSSINLMGN-MLTE-IPKNSLKDENENFKNTYLLTSIDLRFN--KL----  500 (636)
T ss_dssp             CCCCEEEEECCSSCCCS--CCTHHHHTTCCCSEEECCSS-CCSB-CCSSSSEETTEECTTGGGCCEEECCSS--CC----
T ss_pred             cCCCCCEEECcCCccCc--CCHHHHccCCCCCEEECCCC-CCCC-cCHHHhccccccccccCCccEEECcCC--cC----
Confidence            3446666666 554432  12345566788888888887 5433 2211111 1       17888888777  32    


Q ss_pred             cCCcccEEE--EcCccEEEEEEeccccc--eeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          210 NNFHHNCLI--MAPLLQLLHVVDDLMVS--YEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       210 ~~~~~~~~i--~ap~L~~L~l~~~~~~~--~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      .. ......  ..|+|+.|+++++....  ..++++++|+.+++..+...........+...+..+++++.|+++.|.|
T Consensus       501 ~~-lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          501 TK-LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             CB-CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             Cc-cChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence            11 111111  46788888888876542  3456788888888743210000000011224456778888888887765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.33  E-value=3.6e-07  Score=84.10  Aligned_cols=100  Identities=15%  Similarity=0.066  Sum_probs=47.0

Q ss_pred             CCceEEEEEEecCccccCC-CCCcCCCcccEEEeceeecccc-CCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991           93 RDVRELELNIENQQRLELP-ESIYSCRSLEVLKLDYDFDIAV-PVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE  169 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le  169 (287)
                      ..+++|+++.+..  ..++ ..+..+++|++|+|+++.+... |.....+++|+.|+| +..+.+   +...  .+++|+
T Consensus        21 ~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---lp~~--~l~~L~   93 (520)
T 2z7x_B           21 QKTTILNISQNYI--SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK---ISCH--PTVNLK   93 (520)
T ss_dssp             TTCSEEECCSSCC--CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE---EECC--CCCCCS
T ss_pred             ccccEEECCCCcc--cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee---cCcc--ccCCcc
Confidence            4555666544332  2222 2334455666666666655443 223345666666666 544332   1000  456666


Q ss_pred             eEEeeeeeccCCCee--eEEEECCCcceEEEEEe
Q 038991          170 ELCLKVYLKYDGPAT--NFIISSSTLKRFYWTVL  201 (287)
Q Consensus       170 ~L~l~~c~~~~~~~~--~l~i~~~~Lk~L~l~~~  201 (287)
                      +|++++| ...+ ..  ..--..++|+.|.++++
T Consensus        94 ~L~L~~N-~l~~-~~~p~~~~~l~~L~~L~L~~n  125 (520)
T 2z7x_B           94 HLDLSFN-AFDA-LPICKEFGNMSQLKFLGLSTT  125 (520)
T ss_dssp             EEECCSS-CCSS-CCCCGGGGGCTTCCEEEEEES
T ss_pred             EEeccCC-cccc-ccchhhhccCCcceEEEecCc
Confidence            6666666 4332 11  00113356666666665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.32  E-value=6.5e-08  Score=75.99  Aligned_cols=93  Identities=13%  Similarity=0.089  Sum_probs=64.5

Q ss_pred             cccCCCCCcCCCcccEEEeceeeccc--cCCCcccCCCccEEEE-EEEeCCcchHHHHHcc---CCccceEEeeeeeccC
Q 038991          107 RLELPESIYSCRSLEVLKLDYDFDIA--VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSS---CPSIEELCLKVYLKYD  180 (287)
Q Consensus       107 ~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~---cp~Le~L~l~~c~~~~  180 (287)
                      ...+|......-.|++|++++|...+  +. ....|++|+.|+| +|...++.++..+...   ||+||+|+|++|....
T Consensus        50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             GGGSCCCSTTCCCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             cccCCcccCCCceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            34566544455679999999997544  22 3358999999999 8876666888887763   7899999999993233


Q ss_pred             CC-eeeEEEECCCcceEEEEEe
Q 038991          181 GP-ATNFIISSSTLKRFYWTVL  201 (287)
Q Consensus       181 ~~-~~~l~i~~~~Lk~L~l~~~  201 (287)
                      +. +..+. .+++|++|.+.+|
T Consensus       129 D~Gl~~L~-~~~~L~~L~L~~c  149 (176)
T 3e4g_A          129 DKGIIALH-HFRNLKYLFLSDL  149 (176)
T ss_dssp             HHHHHHGG-GCTTCCEEEEESC
T ss_pred             HHHHHHHh-cCCCCCEEECCCC
Confidence            20 22222 4677888888777

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.32  E-value=9.6e-09  Score=96.43  Aligned_cols=59  Identities=22%  Similarity=0.212  Sum_probs=23.9

Q ss_pred             CCCcccEEEeceeecccc---CCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991          116 SCRSLEVLKLDYDFDIAV---PVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY  176 (287)
Q Consensus       116 ~~~~L~~L~L~~~~~~~~---~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c  176 (287)
                      .+++|++|+++++.+...   +.....+++|+.|++ +..+.+  .....+..+++|+.|++.+|
T Consensus       348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n  410 (606)
T 3t6q_A          348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS--LKTEAFKECPQLELLDLAFT  410 (606)
T ss_dssp             TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE--ECTTTTTTCTTCSEEECTTC
T ss_pred             ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc--CCHHHhcCCccCCeEECCCC
Confidence            344455555554433221   212334455555555 332211  11112344455555555544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.32  E-value=3.2e-08  Score=82.57  Aligned_cols=160  Identities=18%  Similarity=0.134  Sum_probs=95.7

Q ss_pred             cccCCCCCcCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCee
Q 038991          107 RLELPESIYSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPAT  184 (287)
Q Consensus       107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~  184 (287)
                      ...+|..+.  ++|+.|+|+++.+...+. ....+++|+.|+| +..+.+  .....+..+++|+.|++.++ ...+ ..
T Consensus        26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n-~l~~-~~   99 (251)
T 3m19_A           26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT--LSAGVFDDLTELGTLGLANN-QLAS-LP   99 (251)
T ss_dssp             CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECTTS-CCCC-CC
T ss_pred             ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc--cCHhHhccCCcCCEEECCCC-cccc-cC
Confidence            345554433  578888888887665432 3456788888888 766543  12234567788888888888 5443 22


Q ss_pred             eEE-EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---eeecCCCceeEEEEEEEccccccC
Q 038991          185 NFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---EVHDLQFLQTVNLAILFLQWSVLN  260 (287)
Q Consensus       185 ~l~-i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~~~~~~~~~~~  260 (287)
                      .-. -..++|+.|.++++  ..    .+......-..++|+.|+++++....+   .++.+++|+.+++..+... ..  
T Consensus       100 ~~~~~~l~~L~~L~L~~N--~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~--  170 (251)
T 3m19_A          100 LGVFDHLTQLDKLYLGGN--QL----KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SV--  170 (251)
T ss_dssp             TTTTTTCTTCCEEECCSS--CC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CC--
T ss_pred             hhHhcccCCCCEEEcCCC--cC----CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-cc--
Confidence            111 13467888888777  32    111111112357888888887765422   3566788888877644221 10  


Q ss_pred             hhhHHHHHhcCCcceEEEEecCee
Q 038991          261 PWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       261 ~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                         ....+..+++++.|.++.|.+
T Consensus       171 ---~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          171 ---PHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             ---CTTTTTTCTTCCEEECCSCCB
T ss_pred             ---CHHHHhCCCCCCEEEeeCCce
Confidence               123566778888888887765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.32  E-value=5.5e-08  Score=83.99  Aligned_cols=145  Identities=12%  Similarity=0.058  Sum_probs=97.6

Q ss_pred             CCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCc
Q 038991          116 SCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTL  193 (287)
Q Consensus       116 ~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~L  193 (287)
                      .+++|++|+|+++.+...+. ....+++|+.|+| +..+.+...    +..+++|+.|++++| ...+    +. ..++|
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n-~l~~----l~-~~~~L  101 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNN-YVQE----LL-VGPSI  101 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCSS-EEEE----EE-ECTTC
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEECcCC-cccc----cc-CCCCc
Confidence            45789999999998766542 3458999999999 776643222    788999999999999 6433    33 45899


Q ss_pred             ceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc---ceeeecCCCceeEEEEEEEccccccChhhHHHHHhc
Q 038991          194 KRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV---SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNG  270 (287)
Q Consensus       194 k~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~---~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~  270 (287)
                      +.|.++++  ..    .+   ...-..++|++|+++++...   ...++.+++|+.++++.+...     ......+...
T Consensus       102 ~~L~l~~n--~l----~~---~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~~  167 (317)
T 3o53_A          102 ETLHAANN--NI----SR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-----TVNFAELAAS  167 (317)
T ss_dssp             CEEECCSS--CC----SE---EEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC-----EEEGGGGGGG
T ss_pred             CEEECCCC--cc----CC---cCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC-----cccHHHHhhc
Confidence            99999988  32    11   11113578999998888655   235567788888877543211     1112234456


Q ss_pred             CCcceEEEEecCee
Q 038991          271 ILNCKSLTLSSGVI  284 (287)
Q Consensus       271 l~~v~~L~l~~~~i  284 (287)
                      +++++.|+++.+.|
T Consensus       168 l~~L~~L~L~~N~l  181 (317)
T 3o53_A          168 SDTLEHLNLQYNFI  181 (317)
T ss_dssp             TTTCCEEECTTSCC
T ss_pred             cCcCCEEECCCCcC
Confidence            67777777776655

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.31  E-value=1.3e-08  Score=90.40  Aligned_cols=147  Identities=12%  Similarity=0.125  Sum_probs=62.9

Q ss_pred             CcCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE-EC
Q 038991          114 IYSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII-SS  190 (287)
Q Consensus       114 ~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i-~~  190 (287)
                      +..+++|++|+|+++.+...+.. ...+++|+.|+| +..+..  .-..++..+++|+.|++.+| ...+ ...-.+ ..
T Consensus        89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l  164 (390)
T 3o6n_A           89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNN-NLER-IEDDTFQAT  164 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCB-CCTTTTSSC
T ss_pred             ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc--CCHHHhcCCCCCcEEECCCC-ccCc-cChhhccCC
Confidence            33445555555555544443212 234555555555 444332  11122344555555555555 3322 111001 23


Q ss_pred             CCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccceeeecCCCceeEEEEEEEccccccChhhHHHHHhc
Q 038991          191 STLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNG  270 (287)
Q Consensus       191 ~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~  270 (287)
                      ++|+.|.++++  ..    .+..   .-..|+|+.|++.++...  .+...++|+++++..+....-   +      ...
T Consensus       165 ~~L~~L~l~~n--~l----~~~~---~~~l~~L~~L~l~~n~l~--~~~~~~~L~~L~l~~n~l~~~---~------~~~  224 (390)
T 3o6n_A          165 TSLQNLQLSSN--RL----THVD---LSLIPSLFHANVSYNLLS--TLAIPIAVEELDASHNSINVV---R------GPV  224 (390)
T ss_dssp             TTCCEEECCSS--CC----SBCC---GGGCTTCSEEECCSSCCS--EEECCSSCSEEECCSSCCCEE---E------CCC
T ss_pred             CCCCEEECCCC--cC----Cccc---cccccccceeeccccccc--ccCCCCcceEEECCCCeeeec---c------ccc
Confidence            45555555554  21    1000   001255555555544332  122334555555432211100   0      012


Q ss_pred             CCcceEEEEecCee
Q 038991          271 ILNCKSLTLSSGVI  284 (287)
Q Consensus       271 l~~v~~L~l~~~~i  284 (287)
                      .++++.|.++.+.|
T Consensus       225 ~~~L~~L~l~~n~l  238 (390)
T 3o6n_A          225 NVELTILKLQHNNL  238 (390)
T ss_dssp             CSSCCEEECCSSCC
T ss_pred             cccccEEECCCCCC
Confidence            36788888887765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.31  E-value=1.5e-08  Score=91.65  Aligned_cols=82  Identities=16%  Similarity=0.023  Sum_probs=43.6

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccc-cCC--CcccCCCccEEEE-EEEeCCcchHHHHHccCCcc
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIA-VPV--SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSI  168 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~--~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~L  168 (287)
                      +++++|+++.+.. ....|..+..+++|++|+|++|.+.. .+.  ....+++|+.|+| +..+.+ ..-..++.++++|
T Consensus        79 ~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L  156 (455)
T 3v47_A           79 SSLIILKLDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-IQPASFFLNMRRF  156 (455)
T ss_dssp             TTCCEEECTTCTT-CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS-CCCCGGGGGCTTC
T ss_pred             ccCCEEeCCCCcc-CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc-cCcccccCCCCcc
Confidence            4566666654332 11224445556667777776665532 110  1345667777777 555543 1112235666777


Q ss_pred             ceEEeeee
Q 038991          169 EELCLKVY  176 (287)
Q Consensus       169 e~L~l~~c  176 (287)
                      +.|++.++
T Consensus       157 ~~L~L~~n  164 (455)
T 3v47_A          157 HVLDLTFN  164 (455)
T ss_dssp             CEEECTTC
T ss_pred             cEEeCCCC
Confidence            77777766

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.30  E-value=2.4e-07  Score=86.23  Aligned_cols=155  Identities=15%  Similarity=0.112  Sum_probs=98.3

Q ss_pred             cCCCcccEEEeceeeccc-cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCe-eeEEEECC
Q 038991          115 YSCRSLEVLKLDYDFDIA-VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPA-TNFIISSS  191 (287)
Q Consensus       115 ~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-~~l~i~~~  191 (287)
                      ..+++|++|+++++.+.. .|.....+++|+.|+| +..+.+-..+...+..+++|+.|++++| ...+.. .......+
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhcCcc
Confidence            355778888888887655 3435567888898888 7766542344455778899999999888 543201 11122457


Q ss_pred             CcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce--eeecCCCceeEEEEEEEccccccChhhHHHHHh
Q 038991          192 TLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY--EVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLN  269 (287)
Q Consensus       192 ~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~--~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~  269 (287)
                      +|+.|.++++  ..    .+.... .+ .++|+.|+++++....+  .+..+++|+.+++..+... .. ..    ..+.
T Consensus       429 ~L~~L~l~~n--~l----~~~~~~-~l-~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l-~~----~~~~  494 (562)
T 3a79_B          429 SILVLNLSSN--ML----TGSVFR-CL-PPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SV-PD----GVFD  494 (562)
T ss_dssp             TCCEEECCSS--CC----CGGGGS-SC-CTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CC-CT----TSTT
T ss_pred             cCCEEECCCC--CC----Ccchhh-hh-cCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CC-CH----HHHh
Confidence            8888888887  32    110000 01 16899999988865522  3447788888888654321 11 11    1477


Q ss_pred             cCCcceEEEEecCee
Q 038991          270 GILNCKSLTLSSGVI  284 (287)
Q Consensus       270 ~l~~v~~L~l~~~~i  284 (287)
                      .+++++.|+++.|.+
T Consensus       495 ~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          495 RLTSLQYIWLHDNPW  509 (562)
T ss_dssp             TCTTCCCEECCSCCB
T ss_pred             cCCCCCEEEecCCCc
Confidence            888899999888765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.30  E-value=2.3e-08  Score=85.46  Aligned_cols=58  Identities=19%  Similarity=0.117  Sum_probs=26.9

Q ss_pred             cCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991          115 YSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY  176 (287)
Q Consensus       115 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c  176 (287)
                      ..+++|++|+|+++.+..++ ....+++|+.|+| +..+..   +...+.++|+|+.|+++++
T Consensus        52 ~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~---l~~~~~~l~~L~~L~l~~N  110 (290)
T 1p9a_G           52 MPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQS---LPLLGQTLPALTVLDVSFN  110 (290)
T ss_dssp             TTCTTCCEEECTTSCCCEEE-CCSCCTTCCEEECCSSCCSS---CCCCTTTCTTCCEEECCSS
T ss_pred             hcCCCCCEEECCCCccCccc-CCCCCCcCCEEECCCCcCCc---CchhhccCCCCCEEECCCC
Confidence            33455555555555444333 2244555555555 443321   1112344555555555555

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.28  E-value=9.9e-08  Score=86.79  Aligned_cols=162  Identities=13%  Similarity=0.058  Sum_probs=82.3

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      +.+++|+++.+..  ..+| .+..+++|++|+|+++.+..++  ...+++|+.|+| +..+.+- .    +..+++|+.|
T Consensus        42 ~~L~~L~Ls~n~l--~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~----~~~l~~L~~L  111 (457)
T 3bz5_A           42 ATLTSLDCHNSSI--TDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-D----VTPLTKLTYL  111 (457)
T ss_dssp             TTCCEEECCSSCC--CCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C----CTTCTTCCEE
T ss_pred             CCCCEEEccCCCc--ccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-e----cCCCCcCCEE
Confidence            4666666654432  2233 3455566666666666554443  345666666666 5554431 1    4556666666


Q ss_pred             EeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCC------------------cccEEE-EcCccEEEEEEec
Q 038991          172 CLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNF------------------HHNCLI-MAPLLQLLHVVDD  231 (287)
Q Consensus       172 ~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~------------------~~~~~i-~ap~L~~L~l~~~  231 (287)
                      ++.+| ...+ +.   + ..++|+.|.+.++  ..    .+.                  ...+.+ ..++|+.|+++++
T Consensus       112 ~L~~N-~l~~-l~---~~~l~~L~~L~l~~N--~l----~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          112 NCDTN-KLTK-LD---VSQNPLLTYLNCARN--TL----TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN  180 (457)
T ss_dssp             ECCSS-CCSC-CC---CTTCTTCCEEECTTS--CC----SCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS
T ss_pred             ECCCC-cCCe-ec---CCCCCcCCEEECCCC--cc----ceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCC
Confidence            66666 4433 21   2 2345555555544  11    110                  000011 2356666666665


Q ss_pred             cccceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          232 LMVSYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       232 ~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      ......++.+++|+.+++..+...     .  +  -+..+++++.|+++.+.|
T Consensus       181 ~l~~l~l~~l~~L~~L~l~~N~l~-----~--~--~l~~l~~L~~L~Ls~N~l  224 (457)
T 3bz5_A          181 KITELDVSQNKLLNRLNCDTNNIT-----K--L--DLNQNIQLTFLDCSSNKL  224 (457)
T ss_dssp             CCCCCCCTTCTTCCEEECCSSCCS-----C--C--CCTTCTTCSEEECCSSCC
T ss_pred             ccceeccccCCCCCEEECcCCcCC-----e--e--ccccCCCCCEEECcCCcc
Confidence            544444556666666665432111     0  0  156677788888877655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.27  E-value=3.7e-08  Score=93.29  Aligned_cols=149  Identities=8%  Similarity=0.035  Sum_probs=92.2

Q ss_pred             CCceEEEEEEecCccc----------------cCCCCCc--CCCcccEEEeceeeccc-cCCCcccCCCccEEEE-EEE-
Q 038991           93 RDVRELELNIENQQRL----------------ELPESIY--SCRSLEVLKLDYDFDIA-VPVSGMCFPNLKFLRV-SLQ-  151 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~----------------~l~~~~~--~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L-~~~-  151 (287)
                      ..+++|+++.+.....                .+|..+.  .+++|++|+|++|.+.. +|.....+++|+.|+| +.. 
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~  285 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG  285 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence            5899999987653210                1888888  89999999999997654 5656678999999999 876 


Q ss_pred             eCC---cchHHHH--HccCCccceEEeeeeeccCCCeee--EEEECCCcceEEEEEeeccccccccCCcccEEEEcCccE
Q 038991          152 YPE---NQLTEKL--FSSCPSIEELCLKVYLKYDGPATN--FIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQ  224 (287)
Q Consensus       152 ~~~---~~~l~~l--~~~cp~Le~L~l~~c~~~~~~~~~--l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~  224 (287)
                      +.+   ...+..+  +..+++|+.|++.+| .... +..  ..-..++|+.|.+.++  ..    .|... ..-..++|+
T Consensus       286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~-ip~~~~l~~l~~L~~L~L~~N--~l----~g~ip-~~~~l~~L~  356 (636)
T 4eco_A          286 ISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKT-FPVETSLQKMKKLGMLECLYN--QL----EGKLP-AFGSEIKLA  356 (636)
T ss_dssp             SCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSS-CCCHHHHTTCTTCCEEECCSC--CC----EEECC-CCEEEEEES
T ss_pred             CccccchHHHHhhhccccCCCCCEEECCCC-cCCc-cCchhhhccCCCCCEEeCcCC--cC----ccchh-hhCCCCCCC
Confidence            532   0122222  234688888888888 5543 332  1124467888877776  21    21111 222345666


Q ss_pred             EEEEEeccccc--eeeecCCC-ceeEEEE
Q 038991          225 LLHVVDDLMVS--YEVHDLQF-LQTVNLA  250 (287)
Q Consensus       225 ~L~l~~~~~~~--~~~~~~p~-L~~~~l~  250 (287)
                      .|+++++....  ..++.+++ |+.+++.
T Consensus       357 ~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls  385 (636)
T 4eco_A          357 SLNLAYNQITEIPANFCGFTEQVENLSFA  385 (636)
T ss_dssp             EEECCSSEEEECCTTSEEECTTCCEEECC
T ss_pred             EEECCCCccccccHhhhhhcccCcEEEcc
Confidence            66666654331  12445555 6666554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.26  E-value=5.3e-08  Score=90.19  Aligned_cols=64  Identities=13%  Similarity=0.078  Sum_probs=38.0

Q ss_pred             cCccEEEEEEeccccce------eeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991          220 APLLQLLHVVDDLMVSY------EVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       220 ap~L~~L~l~~~~~~~~------~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      .++|++|+++++.....      ....+++|+.+++.......  .....+.+.++.+++++.|.++.+.+.
T Consensus       195 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~~~~~~~~L~~l~l~~~~~~  264 (549)
T 2z81_A          195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD--ESFNELLKLLRYILELSEVEFDDCTLN  264 (549)
T ss_dssp             TTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH--HHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred             cccccEEEccCCccccccccccchhhhhhcccceeccccccch--hHHHHHHHHhhhhcccccccccccccc
Confidence            46777777776654321      12345667776665432211  112345667788889999999887764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.26  E-value=9e-08  Score=93.48  Aligned_cols=132  Identities=11%  Similarity=0.013  Sum_probs=73.1

Q ss_pred             CccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEE--------CCCcceEEEEEeeccccccccCC
Q 038991          142 NLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIIS--------SSTLKRFYWTVLVDDYNFAFNNF  212 (287)
Q Consensus       142 ~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~--------~~~Lk~L~l~~~~~~~~~~~~~~  212 (287)
                      +|+.|+| +..+..  .-..++..+++|+.|+|++| .... +..-...        +++|+.|.+++|  ..    .. 
T Consensus       674 ~L~~L~Ls~N~L~~--lp~~~~~~l~~L~~L~Ls~N-~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N--~L----~~-  742 (876)
T 4ecn_A          674 NASTVTLSYNEIQK--FPTELFATGSPISTIILSNN-LMTS-IPENSLKPKDGNYKNTYLLTTIDLRFN--KL----TS-  742 (876)
T ss_dssp             CEEEEECCSSCCCS--CCHHHHHTTCCCSEEECCSC-CCSC-CCTTSSSCTTSCCTTGGGCCEEECCSS--CC----CC-
T ss_pred             CcCEEEccCCcCCc--cCHHHHccCCCCCEEECCCC-cCCc-cChHHhccccccccccCCccEEECCCC--CC----cc-
Confidence            5666666 554432  22345567888888888888 5433 2211111        127888888877  32    11 


Q ss_pred             cccEEE--EcCccEEEEEEeccccc--eeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          213 HHNCLI--MAPLLQLLHVVDDLMVS--YEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       213 ~~~~~i--~ap~L~~L~l~~~~~~~--~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      ......  ..|+|+.|+++++....  ..++++++|+.++++.+...........+...+..+++++.|.++.|.|
T Consensus       743 lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          743 LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             chHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence            111111  45788888888876542  3466788888888754320000000011234556777888888877765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.26  E-value=4.3e-08  Score=76.47  Aligned_cols=78  Identities=17%  Similarity=0.165  Sum_probs=48.5

Q ss_pred             CcccEEEeceeecc--ccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE-ECCCc
Q 038991          118 RSLEVLKLDYDFDI--AVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII-SSSTL  193 (287)
Q Consensus       118 ~~L~~L~L~~~~~~--~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i-~~~~L  193 (287)
                      ++|++|++++|.+.  .+|.....+++|+.|+| +..+.+-    ..+..+++|+.|++++| ...+ ...-.. ..++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L   97 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSEN-RIFG-GLDMLAEKLPNL   97 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESC-CCCS-CCCHHHHHCTTC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCC-cCch-HHHHHHhhCCCC
Confidence            66888888888776  55534467788888888 6665442    34566777777777777 5433 111111 24556


Q ss_pred             ceEEEEEe
Q 038991          194 KRFYWTVL  201 (287)
Q Consensus       194 k~L~l~~~  201 (287)
                      +.|.++++
T Consensus        98 ~~L~Ls~N  105 (168)
T 2ell_A           98 THLNLSGN  105 (168)
T ss_dssp             CEEECBSS
T ss_pred             CEEeccCC
Confidence            66655555

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.25  E-value=1.1e-08  Score=88.98  Aligned_cols=58  Identities=17%  Similarity=0.042  Sum_probs=25.7

Q ss_pred             cCccEEEEEEeccccce---eeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          220 APLLQLLHVVDDLMVSY---EVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       220 ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      .++|+.|+++++.....   .++.+++|+.+++..+... .      +...+..+++++.|+++.|.|
T Consensus       216 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~------lp~~l~~l~~L~~L~l~~N~l  276 (332)
T 2ft3_A          216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R------VPAGLPDLKLLQVVYLHTNNI  276 (332)
T ss_dssp             CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-B------CCTTGGGCTTCCEEECCSSCC
T ss_pred             CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-e------cChhhhcCccCCEEECCCCCC
Confidence            35555555555543311   2445555555555432111 0      111244555555555555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.22  E-value=1.1e-08  Score=88.05  Aligned_cols=56  Identities=14%  Similarity=0.043  Sum_probs=29.2

Q ss_pred             CccEEEEEEeccccceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          221 PLLQLLHVVDDLMVSYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       221 p~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      |+|++|+++++....+.-.-.++|+.+++..+...     .  + ..+..+++++.|+++.|.|
T Consensus       251 ~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~-----~--~-~~~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          251 SALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLN-----R--A-PQPDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             TTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCC-----S--C-CCTTSCCCCSCEECSSTTT
T ss_pred             CcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCC-----C--C-chhhhCCCccEEECcCCCC
Confidence            56666666665544222222356666665433211     0  0 1146667778888777654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.21  E-value=2.3e-07  Score=79.72  Aligned_cols=146  Identities=12%  Similarity=0.121  Sum_probs=100.7

Q ss_pred             cCCceEEEEEEecCccccC-CCCCcCCCcccEEEeceeeccc---c--CCCcccCCCccEEEE-EEEeCCcch-HHHHHc
Q 038991           92 MRDVRELELNIENQQRLEL-PESIYSCRSLEVLKLDYDFDIA---V--PVSGMCFPNLKFLRV-SLQYPENQL-TEKLFS  163 (287)
Q Consensus        92 ~~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~---~--~~~~~~~~~L~~L~L-~~~~~~~~~-l~~l~~  163 (287)
                      .+++++|+++.+..  ..+ +..+..+++|++|+|+++.+..   .  +.....+++|+.|+| +..+..-.. ...++.
T Consensus       144 ~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~  221 (310)
T 4glp_A          144 KPGLKVLSIAQAHS--PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA  221 (310)
T ss_dssp             CSCCCEEEEECCSS--CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCc--chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence            46899999977654  333 3455577999999999997532   2  213358999999999 887754222 234578


Q ss_pred             cCCccceEEeeeeeccCCCee--eEEE--ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc-eee
Q 038991          164 SCPSIEELCLKVYLKYDGPAT--NFII--SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS-YEV  238 (287)
Q Consensus       164 ~cp~Le~L~l~~c~~~~~~~~--~l~i--~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~-~~~  238 (287)
                      .+++|++|+|+++ ...+ ..  .+.-  ..++|+.|.++++  ...    .....+   .++|+.|+++++.... ..+
T Consensus       222 ~l~~L~~L~Ls~N-~l~~-~~p~~~~~~~~~~~L~~L~Ls~N--~l~----~lp~~~---~~~L~~L~Ls~N~l~~~~~~  290 (310)
T 4glp_A          222 AGVQPHSLDLSHN-SLRA-TVNPSAPRCMWSSALNSLNLSFA--GLE----QVPKGL---PAKLRVLDLSSNRLNRAPQP  290 (310)
T ss_dssp             HTCCCSSEECTTS-CCCC-CCCSCCSSCCCCTTCCCEECCSS--CCC----SCCSCC---CSCCSCEECCSCCCCSCCCT
T ss_pred             cCCCCCEEECCCC-CCCc-cchhhHHhccCcCcCCEEECCCC--CCC----chhhhh---cCCCCEEECCCCcCCCCchh
Confidence            8999999999999 6654 31  1111  1279999999998  332    211112   2899999999997664 346


Q ss_pred             ecCCCceeEEEE
Q 038991          239 HDLQFLQTVNLA  250 (287)
Q Consensus       239 ~~~p~L~~~~l~  250 (287)
                      ..+++|+.++++
T Consensus       291 ~~l~~L~~L~L~  302 (310)
T 4glp_A          291 DELPEVDNLTLD  302 (310)
T ss_dssp             TSCCCCSCEECS
T ss_pred             hhCCCccEEECc
Confidence            788999988875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.21  E-value=2.8e-07  Score=79.39  Aligned_cols=174  Identities=13%  Similarity=0.050  Sum_probs=82.0

Q ss_pred             CCceEEEEEEecCccccCCCCCcCC-----CcccEEEeceeeccccC-CCcccCCCccEEEE-EEEeCCcchHH-HH-Hc
Q 038991           93 RDVRELELNIENQQRLELPESIYSC-----RSLEVLKLDYDFDIAVP-VSGMCFPNLKFLRV-SLQYPENQLTE-KL-FS  163 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~-----~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L-~~~~~~~~~l~-~l-~~  163 (287)
                      +.+++|+++.+...  .+|..+...     ++|++|+|+++.+...+ .....+++|+.|+| +..+.+...+. .+ +.
T Consensus       121 ~~L~~L~Ls~N~l~--~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  198 (312)
T 1wwl_A          121 PDLNILNLRNVSWA--TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL  198 (312)
T ss_dssp             CCCSEEEEESCBCS--SSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred             CCccEEEccCCCCc--chhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence            45666666554422  123322222     56666666666554433 23445666666666 55433211111 11 15


Q ss_pred             cCCccceEEeeeeeccCCCeeeEE----EECCCcceEEEEEeeccccccccCCc-ccEEEEcCccEEEEEEeccccceee
Q 038991          164 SCPSIEELCLKVYLKYDGPATNFI----ISSSTLKRFYWTVLVDDYNFAFNNFH-HNCLIMAPLLQLLHVVDDLMVSYEV  238 (287)
Q Consensus       164 ~cp~Le~L~l~~c~~~~~~~~~l~----i~~~~Lk~L~l~~~~~~~~~~~~~~~-~~~~i~ap~L~~L~l~~~~~~~~~~  238 (287)
                      .+++|+.|++.+| ...+ ...+.    -..++|+.|.++++  ..    .+.. .......++|+.|+++++....+.-
T Consensus       199 ~l~~L~~L~L~~N-~l~~-~~~~~~~~~~~l~~L~~L~Ls~N--~l----~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~  270 (312)
T 1wwl_A          199 KFPTLQVLALRNA-GMET-PSGVCSALAAARVQLQGLDLSHN--SL----RDAAGAPSCDWPSQLNSLNLSFTGLKQVPK  270 (312)
T ss_dssp             SCTTCCEEECTTS-CCCC-HHHHHHHHHHTTCCCSEEECTTS--CC----CSSCCCSCCCCCTTCCEEECTTSCCSSCCS
T ss_pred             cCCCCCEEECCCC-cCcc-hHHHHHHHHhcCCCCCEEECCCC--cC----CcccchhhhhhcCCCCEEECCCCccChhhh
Confidence            5666666666666 4432 11111    12356666666665  22    1101 1111224667777766665432211


Q ss_pred             ecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          239 HDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       239 ~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      .-.++|+.+++..+...     .  +.. +..+++++.|+++.|.|
T Consensus       271 ~~~~~L~~L~Ls~N~l~-----~--~p~-~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          271 GLPAKLSVLDLSYNRLD-----R--NPS-PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             SCCSEEEEEECCSSCCC-----S--CCC-TTTSCEEEEEECTTCTT
T ss_pred             hccCCceEEECCCCCCC-----C--Chh-HhhCCCCCEEeccCCCC
Confidence            11145666655433111     0  011 55667777777776654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.20  E-value=2.4e-08  Score=84.38  Aligned_cols=102  Identities=22%  Similarity=0.187  Sum_probs=49.9

Q ss_pred             CceEEEEEEecCccccCCC-CCcCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991           94 DVRELELNIENQQRLELPE-SIYSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE  170 (287)
Q Consensus        94 ~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~  170 (287)
                      .+++|+++.+..  ..++. .+..+++|++|+|+++.+...+. ....+++|+.|+| +..+.+  .....+.++++|+.
T Consensus        29 ~l~~L~ls~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~  104 (276)
T 2z62_A           29 STKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSSLQK  104 (276)
T ss_dssp             TCCEEECTTCCC--CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCE
T ss_pred             CccEEECCCCcc--cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc--cChhhhcCCccccE
Confidence            566666543332  22222 34445666666666665544332 2345666666666 554432  11122455666666


Q ss_pred             EEeeeeeccCCCeeeEEE-ECCCcceEEEEEe
Q 038991          171 LCLKVYLKYDGPATNFII-SSSTLKRFYWTVL  201 (287)
Q Consensus       171 L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~  201 (287)
                      |++.++ ...+ .....+ ..++|+.|.+.++
T Consensus       105 L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n  134 (276)
T 2z62_A          105 LVAVET-NLAS-LENFPIGHLKTLKELNVAHN  134 (276)
T ss_dssp             EECTTS-CCCC-STTCCCTTCTTCCEEECCSS
T ss_pred             EECCCC-Cccc-cCchhcccCCCCCEEECcCC
Confidence            666666 4333 222112 2356666666555

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.18  E-value=2.5e-08  Score=93.75  Aligned_cols=166  Identities=14%  Similarity=0.144  Sum_probs=89.1

Q ss_pred             CCceEEEEEEecCccccCC-CCCcCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991           93 RDVRELELNIENQQRLELP-ESIYSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE  169 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le  169 (287)
                      +.++.|++..+..  ..++ ..+..+++|++|+|++|.+...+.. ...+++|+.|+| +..+..  ....++.++++|+
T Consensus        75 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~  150 (597)
T 3oja_B           75 RQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLT  150 (597)
T ss_dssp             CCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCC
T ss_pred             CCCcEEECCCCCC--CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC--CCHHHhccCCCCC
Confidence            5677777654432  2333 3455567777777777766554422 356777777777 665542  1123356677777


Q ss_pred             eEEeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccceeeecCCCceeEE
Q 038991          170 ELCLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYEVHDLQFLQTVN  248 (287)
Q Consensus       170 ~L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~  248 (287)
                      .|++++| ...+ ...-.+ ..++|+.|.++++  ..    .+..   .-..|+|+.|+++++...  .+...++|+.++
T Consensus       151 ~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~L~~N--~l----~~~~---~~~l~~L~~L~l~~n~l~--~l~~~~~L~~L~  217 (597)
T 3oja_B          151 TLSMSNN-NLER-IEDDTFQATTSLQNLQLSSN--RL----THVD---LSLIPSLFHANVSYNLLS--TLAIPIAVEELD  217 (597)
T ss_dssp             EEECCSS-CCCB-CCTTTTTTCTTCCEEECTTS--CC----SBCC---GGGCTTCSEEECCSSCCS--EEECCTTCSEEE
T ss_pred             EEEeeCC-cCCC-CChhhhhcCCcCcEEECcCC--CC----CCcC---hhhhhhhhhhhcccCccc--cccCCchhheee
Confidence            7777777 5433 211111 2456777777666  22    1100   012467777777666443  234455677666


Q ss_pred             EEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          249 LAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       249 l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      +..+....- ..        ...++++.|.++.+.|
T Consensus       218 ls~n~l~~~-~~--------~~~~~L~~L~L~~n~l  244 (597)
T 3oja_B          218 ASHNSINVV-RG--------PVNVELTILKLQHNNL  244 (597)
T ss_dssp             CCSSCCCEE-EC--------SCCSCCCEEECCSSCC
T ss_pred             ccCCccccc-cc--------ccCCCCCEEECCCCCC
Confidence            543321100 00        1125788888887765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.18  E-value=4.8e-08  Score=88.34  Aligned_cols=59  Identities=14%  Similarity=0.113  Sum_probs=31.6

Q ss_pred             cCccEEEEEEeccccc---eeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          220 APLLQLLHVVDDLMVS---YEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       220 ap~L~~L~l~~~~~~~---~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      .++|++|+++++....   ..++++++|+.+++..+... .     .....++.+++++.|+++.|.+
T Consensus       346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~-----~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-S-----VPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-C-----CCTTTTTTCTTCCEEECCSSCB
T ss_pred             cccCCEEECCCCcccccChhhccccccccEEECCCCccc-c-----CCHhHhccCCcccEEEccCCCc
Confidence            4566666666554431   23455566666665433211 0     0123456777777777777655

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.17  E-value=8.7e-07  Score=75.13  Aligned_cols=35  Identities=23%  Similarity=0.361  Sum_probs=33.4

Q ss_pred             CCCCCchHHHHHHhcCCChhhhh-hhccchhhhHhh
Q 038991            3 RNSSLLDSVLCNILSFLTTKIDV-ATCILSSRWRHV   37 (287)
Q Consensus         3 ~is~LPd~vL~~Ils~L~~~~~~-~~s~vSkrW~~l   37 (287)
                      .++.||||+|.+||++||.++++ +++.|||+|+.+
T Consensus        50 ~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           50 YLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             ChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            57899999999999999999999 999999999986

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.16  E-value=1.2e-08  Score=87.12  Aligned_cols=166  Identities=14%  Similarity=0.077  Sum_probs=95.9

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      ..+++|+++.+..  ..++.. ..+++|++|+|+++.+..+|.....+++|+.|+| +..+..-  ....+.++++|+.|
T Consensus        55 ~~L~~L~L~~n~l--~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l--~~~~~~~l~~L~~L  129 (290)
T 1p9a_G           55 TRLTQLNLDRAEL--TKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL--PLGALRGLGELQEL  129 (290)
T ss_dssp             TTCCEEECTTSCC--CEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCC--CSSTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcc--CcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCccc--CHHHHcCCCCCCEE
Confidence            5777777755442  223332 4567788888888877766655667888888888 6655431  11235677888888


Q ss_pred             EeeeeeccCCCeeeEE-EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce--eeecCCCceeEE
Q 038991          172 CLKVYLKYDGPATNFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY--EVHDLQFLQTVN  248 (287)
Q Consensus       172 ~l~~c~~~~~~~~~l~-i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~--~~~~~p~L~~~~  248 (287)
                      .+.++ ...+ ...-. -..++|+.|.++++  ..    .+......-..++|+.|+++++....+  .+...++|+.++
T Consensus       130 ~L~~N-~l~~-~~~~~~~~l~~L~~L~L~~N--~l----~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~  201 (290)
T 1p9a_G          130 YLKGN-ELKT-LPPGLLTPTPKLEKLSLANN--NL----TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF  201 (290)
T ss_dssp             ECTTS-CCCC-CCTTTTTTCTTCCEEECTTS--CC----SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEE
T ss_pred             ECCCC-CCCc-cChhhcccccCCCEEECCCC--cC----CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEE
Confidence            88888 5443 22111 13467888888776  22    211111112357888888887765422  334556777777


Q ss_pred             EEEEEccccccChhhHHHHHhcCC
Q 038991          249 LAILFLQWSVLNPWEVVQLLNGIL  272 (287)
Q Consensus       249 l~~~~~~~~~~~~~~~~~~l~~l~  272 (287)
                      +..+..... .....+.++++.-+
T Consensus       202 L~~Np~~C~-c~~~~l~~wl~~~~  224 (290)
T 1p9a_G          202 LHGNPWLCN-CEILYFRRWLQDNA  224 (290)
T ss_dssp             CCSCCBCCS-GGGHHHHHHHHHTG
T ss_pred             eCCCCccCc-CccHHHHHHHHhCc
Confidence            765443211 22233555665543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.15  E-value=2.3e-07  Score=84.36  Aligned_cols=119  Identities=13%  Similarity=0.063  Sum_probs=89.7

Q ss_pred             CcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE-ECC
Q 038991          114 IYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII-SSS  191 (287)
Q Consensus       114 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i-~~~  191 (287)
                      +..+++|++|+++++.+...| ....+++|+.|+| +..+.+- .    +..+++|+.|++++| ...+ ..   + ..+
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~-~----~~~l~~L~~L~Ls~N-~l~~-~~---~~~l~  106 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTL-D----LSQNTNLTYLACDSN-KLTN-LD---VTPLT  106 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCC-C----CTTCTTCSEEECCSS-CCSC-CC---CTTCT
T ss_pred             hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeE-c----cccCCCCCEEECcCC-CCce-ee---cCCCC
Confidence            345688999999999887777 6778999999999 8877652 1    778999999999999 7765 43   3 457


Q ss_pred             CcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccceeeecCCCceeEEEEEE
Q 038991          192 TLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYEVHDLQFLQTVNLAIL  252 (287)
Q Consensus       192 ~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~  252 (287)
                      +|+.|.++++  ..    .+ . . .-..++|++|+++++......++.+++|+.+++..+
T Consensus       107 ~L~~L~L~~N--~l----~~-l-~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          107 KLTYLNCDTN--KL----TK-L-D-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLN  158 (457)
T ss_dssp             TCCEEECCSS--CC----SC-C-C-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTC
T ss_pred             cCCEEECCCC--cC----Ce-e-c-CCCCCcCCEEECCCCccceeccccCCcCCEEECCCC
Confidence            9999999988  32    22 1 1 124578888888887766556777777777776543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.13  E-value=3.4e-08  Score=79.33  Aligned_cols=110  Identities=15%  Similarity=0.147  Sum_probs=71.9

Q ss_pred             CCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE
Q 038991          110 LPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII  188 (287)
Q Consensus       110 l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i  188 (287)
                      +|..+..+++|++|+|+++.+..+| ....+++|+.|+| +..+..   +...+..+|+|+.|++++| ...+ ...+ .
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~---l~~~~~~~~~L~~L~L~~N-~l~~-l~~~-~  112 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK---IENLDAVADTLEELWISYN-QIAS-LSGI-E  112 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECS---CSSHHHHHHHCSEEEEEEE-ECCC-HHHH-H
T ss_pred             hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccc---ccchhhcCCcCCEEECcCC-cCCc-CCcc-c
Confidence            3335666788999999988877777 6778899999999 887763   3345556788999999988 6655 4321 1


Q ss_pred             ECCCcceEEEEEeeccccccccCCccc--EEEEcCccEEEEEEeccc
Q 038991          189 SSSTLKRFYWTVLVDDYNFAFNNFHHN--CLIMAPLLQLLHVVDDLM  233 (287)
Q Consensus       189 ~~~~Lk~L~l~~~~~~~~~~~~~~~~~--~~i~ap~L~~L~l~~~~~  233 (287)
                      ..++|+.|.+.++  ..    .+ ...  ..-..|+|++|++.++..
T Consensus       113 ~l~~L~~L~l~~N--~i----~~-~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          113 KLVNLRVLYMSNN--KI----TN-WGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHHSSEEEESEE--EC----CC-HHHHHHHTTTTTCSEEEECSCHH
T ss_pred             cCCCCCEEECCCC--cC----Cc-hhHHHHHhcCCCCCEEEecCCcc
Confidence            3467777777777  22    11 011  111356677777766643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.12  E-value=1.9e-06  Score=81.27  Aligned_cols=90  Identities=18%  Similarity=0.146  Sum_probs=42.4

Q ss_pred             CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEE
Q 038991           94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELC  172 (287)
Q Consensus        94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~  172 (287)
                      +++.|+++.+.  ...+|..+.  ++|++|+|++|.+..+| .  .+++|+.|+| +..+..      +-...++|+.|+
T Consensus        41 ~l~~L~ls~n~--L~~lp~~l~--~~L~~L~L~~N~l~~lp-~--~l~~L~~L~Ls~N~l~~------lp~~l~~L~~L~  107 (622)
T 3g06_A           41 GNAVLNVGESG--LTTLPDCLP--AHITTLVIPDNNLTSLP-A--LPPELRTLEVSGNQLTS------LPVLPPGLLELS  107 (622)
T ss_dssp             CCCEEECCSSC--CSCCCSCCC--TTCSEEEECSCCCSCCC-C--CCTTCCEEEECSCCCSC------CCCCCTTCCEEE
T ss_pred             CCcEEEecCCC--cCccChhhC--CCCcEEEecCCCCCCCC-C--cCCCCCEEEcCCCcCCc------CCCCCCCCCEEE
Confidence            45555554332  224444333  45666666666554444 1  4556666666 544432      111445555555


Q ss_pred             eeeeeccCCCeeeEEEECCCcceEEEEEe
Q 038991          173 LKVYLKYDGPATNFIISSSTLKRFYWTVL  201 (287)
Q Consensus       173 l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~  201 (287)
                      +++| ...+ +..   ..++|+.|.+.++
T Consensus       108 Ls~N-~l~~-l~~---~l~~L~~L~L~~N  131 (622)
T 3g06_A          108 IFSN-PLTH-LPA---LPSGLCKLWIFGN  131 (622)
T ss_dssp             ECSC-CCCC-CCC---CCTTCCEEECCSS
T ss_pred             CcCC-cCCC-CCC---CCCCcCEEECCCC
Confidence            5555 4333 222   2344444444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.12  E-value=1.4e-08  Score=90.13  Aligned_cols=185  Identities=14%  Similarity=0.031  Sum_probs=120.4

Q ss_pred             CCceEEEEEEecCcc---ccCCCCCcCCCcccEEEeceeecccc-----CCCcccC---------CCccEEEE-EEEeCC
Q 038991           93 RDVRELELNIENQQR---LELPESIYSCRSLEVLKLDYDFDIAV-----PVSGMCF---------PNLKFLRV-SLQYPE  154 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~~~~~-----~~~~~~~---------~~L~~L~L-~~~~~~  154 (287)
                      +++++|+|+.+....   ..+|..+..+++|++|+|++|.+...     +.....+         ++|+.|+| +..+.+
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~  173 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  173 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence            689999997765431   23566667789999999999976431     1011123         99999999 888764


Q ss_pred             cchHH---HHHccCCccceEEeeeeeccCCC-eeeE----EEECCCcceEEEEEeecccccccc--CCcccEEEEcCccE
Q 038991          155 NQLTE---KLFSSCPSIEELCLKVYLKYDGP-ATNF----IISSSTLKRFYWTVLVDDYNFAFN--NFHHNCLIMAPLLQ  224 (287)
Q Consensus       155 ~~~l~---~l~~~cp~Le~L~l~~c~~~~~~-~~~l----~i~~~~Lk~L~l~~~~~~~~~~~~--~~~~~~~i~ap~L~  224 (287)
                       ..+.   ..+..+++|+.|.+.+| ...+. ...+    -...++|+.|.+++|  ...  ..  .......-..|+|+
T Consensus       174 -~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n--~l~--~~g~~~l~~~l~~~~~L~  247 (386)
T 2ca6_A          174 -GSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN--TFT--HLGSSALAIALKSWPNLR  247 (386)
T ss_dssp             -GGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS--CCH--HHHHHHHHHHGGGCTTCC
T ss_pred             -HHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC--CCC--cHHHHHHHHHHccCCCcC
Confidence             3333   56779999999999999 65420 1111    124689999999988  321  00  00111112468999


Q ss_pred             EEEEEeccccce-------ee--ecCCCceeEEEEEEEccccccChhhHHHHH-hcCCcceEEEEecCeeE
Q 038991          225 LLHVVDDLMVSY-------EV--HDLQFLQTVNLAILFLQWSVLNPWEVVQLL-NGILNCKSLTLSSGVIL  285 (287)
Q Consensus       225 ~L~l~~~~~~~~-------~~--~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l-~~l~~v~~L~l~~~~i~  285 (287)
                      +|+++++.....       .+  +.+++|+.+++..+.....  ....+...+ .++++++.|.++.|.|.
T Consensus       248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~--g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD--AVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH--HHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH--HHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            999998875421       22  4489999999865432110  011345555 66899999999988763

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.11  E-value=6.5e-08  Score=92.04  Aligned_cols=31  Identities=19%  Similarity=0.245  Sum_probs=15.9

Q ss_pred             cCccEEEEEEeccccce---eeecCCCceeEEEE
Q 038991          220 APLLQLLHVVDDLMVSY---EVHDLQFLQTVNLA  250 (287)
Q Consensus       220 ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~  250 (287)
                      .++|+.|+++++....+   .++++++|+.+++.
T Consensus       535 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls  568 (680)
T 1ziw_A          535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG  568 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCCCEEECCCCCCCCCCHHHcccccCcceeECC
Confidence            35566666655543311   24455566665553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.10  E-value=7.5e-08  Score=94.04  Aligned_cols=101  Identities=16%  Similarity=0.091  Sum_probs=66.9

Q ss_pred             CCceEEEEEEecCccccCCC--CCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCc-c
Q 038991           93 RDVRELELNIENQQRLELPE--SIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPS-I  168 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~-L  168 (287)
                      +++++|+++.+...  .+|.  .+..+++|+.|+|+++.+..+| ....+++|+.|+| +..+..   +..-+..+++ |
T Consensus       548 ~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~---lp~~l~~l~~~L  621 (876)
T 4ecn_A          548 PKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEE---IPEDFCAFTDQV  621 (876)
T ss_dssp             TTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSC---CCTTSCEECTTC
T ss_pred             CCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCcccc---chHHHhhccccC
Confidence            37888887665532  6777  6777788888888888776666 6667888888888 766542   2223666777 8


Q ss_pred             ceEEeeeeeccCCCeeeEEE--ECCCcceEEEEEe
Q 038991          169 EELCLKVYLKYDGPATNFII--SSSTLKRFYWTVL  201 (287)
Q Consensus       169 e~L~l~~c~~~~~~~~~l~i--~~~~Lk~L~l~~~  201 (287)
                      +.|+|++| .... ++...-  ..++|+.|.++++
T Consensus       622 ~~L~Ls~N-~L~~-lp~~~~~~~~~~L~~L~Ls~N  654 (876)
T 4ecn_A          622 EGLGFSHN-KLKY-IPNIFNAKSVYVMGSVDFSYN  654 (876)
T ss_dssp             CEEECCSS-CCCS-CCSCCCTTCSSCEEEEECCSS
T ss_pred             CEEECcCC-CCCc-CchhhhccccCCCCEEECcCC
Confidence            88888888 5543 332111  1134777777776

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.10  E-value=5.7e-07  Score=75.63  Aligned_cols=35  Identities=23%  Similarity=0.175  Sum_probs=32.7

Q ss_pred             CCCCCchHHHHHHhcCCChhhhhhhccchhhhHhh
Q 038991            3 RNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHV   37 (287)
Q Consensus         3 ~is~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~l   37 (287)
                      .|++||+||+++|||||+.+|+++++.|||+||.+
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l   38 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET   38 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999974

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.08  E-value=6.4e-08  Score=84.04  Aligned_cols=172  Identities=12%  Similarity=0.095  Sum_probs=97.8

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      .++++|++..+... ...|..+..+++|++|+|+++.+..+|..  .+++|+.|++ +..+..  .....+..+++|+.|
T Consensus        78 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--~~~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L  152 (332)
T 2ft3_A           78 QHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPN--LPSSLVELRIHDNRIRK--VPKGVFSGLRNMNCI  152 (332)
T ss_dssp             TTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCCSCCSS--CCTTCCEEECCSSCCCC--CCSGGGSSCSSCCEE
T ss_pred             CCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCCccCcc--ccccCCEEECCCCccCc--cCHhHhCCCccCCEE
Confidence            45666666544321 11233445566777777777665555422  2267777777 655432  112235667777777


Q ss_pred             EeeeeeccCCC-eeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc---eeeecCCCceeE
Q 038991          172 CLKVYLKYDGP-ATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS---YEVHDLQFLQTV  247 (287)
Q Consensus       172 ~l~~c~~~~~~-~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~~~  247 (287)
                      ++.++ ...+. ...-.....+|+.|.++++  ..    .+....+   .++|++|+++++....   ..+..+++|+.+
T Consensus       153 ~l~~n-~l~~~~~~~~~~~~l~L~~L~l~~n--~l----~~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  222 (332)
T 2ft3_A          153 EMGGN-PLENSGFEPGAFDGLKLNYLRISEA--KL----TGIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRL  222 (332)
T ss_dssp             ECCSC-CCBGGGSCTTSSCSCCCSCCBCCSS--BC----SSCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCC
T ss_pred             ECCCC-ccccCCCCcccccCCccCEEECcCC--CC----CccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            77777 43210 0001111126777777776  22    1101111   2789999998886552   346788899998


Q ss_pred             EEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991          248 NLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       248 ~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      ++..+....  .    ....+..+++++.|+++.+.|.
T Consensus       223 ~L~~N~l~~--~----~~~~~~~l~~L~~L~L~~N~l~  254 (332)
T 2ft3_A          223 GLGHNQIRM--I----ENGSLSFLPTLRELHLDNNKLS  254 (332)
T ss_dssp             BCCSSCCCC--C----CTTGGGGCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCc--C----ChhHhhCCCCCCEEECCCCcCe
Confidence            886442211  1    1235678999999999988664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.07  E-value=3.4e-08  Score=75.46  Aligned_cols=80  Identities=14%  Similarity=0.084  Sum_probs=51.4

Q ss_pred             CCcccEEEeceeecc--ccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCc
Q 038991          117 CRSLEVLKLDYDFDI--AVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTL  193 (287)
Q Consensus       117 ~~~L~~L~L~~~~~~--~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~L  193 (287)
                      .++|+.|++++|.+.  .+|.....+++|+.|++ +..+.+-    ..+..+++|+.|++++| ...+......-..++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCC
Confidence            367999999998876  46645567888888888 7766542    44677888888888888 5433011111124555


Q ss_pred             ceEEEEEe
Q 038991          194 KRFYWTVL  201 (287)
Q Consensus       194 k~L~l~~~  201 (287)
                      +.|.++++
T Consensus        91 ~~L~ls~N   98 (149)
T 2je0_A           91 THLNLSGN   98 (149)
T ss_dssp             CEEECTTS
T ss_pred             CEEECCCC
Confidence            55555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.06  E-value=3.8e-06  Score=82.02  Aligned_cols=104  Identities=17%  Similarity=0.091  Sum_probs=52.4

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeecccc-CCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAV-PVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE  170 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~  170 (287)
                      .++++|+++.+... ...+..+..+++|+.|+|+++.+... +.....+++|+.|+| +..+.+  .....+.++|+|+.
T Consensus       266 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~  342 (844)
T 3j0a_A          266 SSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE--LYSSNFYGLPKVAY  342 (844)
T ss_dssp             SCCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC--CCSCSCSSCTTCCE
T ss_pred             CCccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc--cCHHHhcCCCCCCE
Confidence            35566665433221 11233344456677777766655443 223345666777776 554432  11123455666677


Q ss_pred             EEeeeeeccCCCeeeEEE-ECCCcceEEEEEe
Q 038991          171 LCLKVYLKYDGPATNFII-SSSTLKRFYWTVL  201 (287)
Q Consensus       171 L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~  201 (287)
                      |++.++ .... ...-.. ..++|+.|.++++
T Consensus       343 L~L~~N-~i~~-~~~~~~~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          343 IDLQKN-HIAI-IQDQTFKFLEKLQTLDLRDN  372 (844)
T ss_dssp             EECCSC-CCCC-CCSSCSCSCCCCCEEEEETC
T ss_pred             EECCCC-CCCc-cChhhhcCCCCCCEEECCCC
Confidence            766666 4433 221111 2456666666666

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.05  E-value=2e-06  Score=84.02  Aligned_cols=179  Identities=15%  Similarity=0.197  Sum_probs=110.7

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeecccc-CCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAV-PVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE  170 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~  170 (287)
                      .+++.|++..+... ...|..+..+++|++|+|+++.+... +.....+++|+.|+| +..+..-  ....+.++++|+.
T Consensus       290 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~--~~~~~~~l~~L~~  366 (844)
T 3j0a_A          290 KDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII--QDQTFKFLEKLQT  366 (844)
T ss_dssp             CCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCC--CSSCSCSCCCCCE
T ss_pred             CCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCcc--ChhhhcCCCCCCE
Confidence            58899998776542 23345566789999999999977654 335568999999999 7766431  1223577999999


Q ss_pred             EEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCc------------------ccEEEEcCccEEEEEEecc
Q 038991          171 LCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFH------------------HNCLIMAPLLQLLHVVDDL  232 (287)
Q Consensus       171 L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~------------------~~~~i~ap~L~~L~l~~~~  232 (287)
                      |+++++ ...+ +..    .++|+.|.+.++  ... .+....                  ....-..|+|+.|+++++.
T Consensus       367 L~Ls~N-~l~~-i~~----~~~L~~L~l~~N--~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~  437 (844)
T 3j0a_A          367 LDLRDN-ALTT-IHF----IPSIPDIFLSGN--KLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR  437 (844)
T ss_dssp             EEEETC-CSCC-CSS----CCSCSEEEEESC--CCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred             EECCCC-CCCc-ccC----CCCcchhccCCC--Ccc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCc
Confidence            999999 6554 332    677888888776  221 000000                  0000145777888887775


Q ss_pred             cc----ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          233 MV----SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       233 ~~----~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      ..    ...+..+++|+.++++.+..... .........++++++++.|+++.|.|
T Consensus       438 l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~-~~~~~~~~~~~~l~~L~~L~Ls~N~l  492 (844)
T 3j0a_A          438 FSSCSGDQTPSENPSLEQLFLGENMLQLA-WETELCWDVFEGLSHLQVLYLNHNYL  492 (844)
T ss_dssp             CCCCCSSSSSCSCTTCCBCEEESCCCSSS-CCSCCCSSCSSCBCCEECCCCCHHHH
T ss_pred             ccccccccccccCCccccccCCCCccccc-cccccchhhhcCcccccEEECCCCcc
Confidence            43    12234567777777765432100 00011124567788888888887654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.04  E-value=2.7e-06  Score=80.15  Aligned_cols=90  Identities=14%  Similarity=0.054  Sum_probs=55.5

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      .+++.|+++.+..  ..+|.   .+++|++|+|++|.+..+| .  .+++|+.|+| +..+..-      ....++|+.|
T Consensus        61 ~~L~~L~L~~N~l--~~lp~---~l~~L~~L~Ls~N~l~~lp-~--~l~~L~~L~Ls~N~l~~l------~~~l~~L~~L  126 (622)
T 3g06_A           61 AHITTLVIPDNNL--TSLPA---LPPELRTLEVSGNQLTSLP-V--LPPGLLELSIFSNPLTHL------PALPSGLCKL  126 (622)
T ss_dssp             TTCSEEEECSCCC--SCCCC---CCTTCCEEEECSCCCSCCC-C--CCTTCCEEEECSCCCCCC------CCCCTTCCEE
T ss_pred             CCCcEEEecCCCC--CCCCC---cCCCCCEEEcCCCcCCcCC-C--CCCCCCEEECcCCcCCCC------CCCCCCcCEE
Confidence            5778888766543  34554   3577888888888766666 2  6788888888 6655431      1145667777


Q ss_pred             EeeeeeccCCCeeeEEEECCCcceEEEEEe
Q 038991          172 CLKVYLKYDGPATNFIISSSTLKRFYWTVL  201 (287)
Q Consensus       172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~  201 (287)
                      ++.+| ...+ +..   ..++|+.|.+++|
T Consensus       127 ~L~~N-~l~~-lp~---~l~~L~~L~Ls~N  151 (622)
T 3g06_A          127 WIFGN-QLTS-LPV---LPPGLQELSVSDN  151 (622)
T ss_dssp             ECCSS-CCSC-CCC---CCTTCCEEECCSS
T ss_pred             ECCCC-CCCc-CCC---CCCCCCEEECcCC
Confidence            77666 4433 222   2366666666665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.04  E-value=1.7e-07  Score=79.07  Aligned_cols=31  Identities=23%  Similarity=0.110  Sum_probs=16.7

Q ss_pred             ccEEEEEEeccccce---eeecCCCceeEEEEEE
Q 038991          222 LLQLLHVVDDLMVSY---EVHDLQFLQTVNLAIL  252 (287)
Q Consensus       222 ~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~~~  252 (287)
                      +|++|+++++.....   .++.+++|+.++++.+
T Consensus       201 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             cccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence            566666666554311   2345666666665433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.02  E-value=1.9e-08  Score=91.09  Aligned_cols=62  Identities=19%  Similarity=-0.009  Sum_probs=30.7

Q ss_pred             CccEEEEEEeccccc-------eeeecCCCceeEEEEEEEccccccChhhH-HHHHhcCCcceEEEEecCee
Q 038991          221 PLLQLLHVVDDLMVS-------YEVHDLQFLQTVNLAILFLQWSVLNPWEV-VQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       221 p~L~~L~l~~~~~~~-------~~~~~~p~L~~~~l~~~~~~~~~~~~~~~-~~~l~~l~~v~~L~l~~~~i  284 (287)
                      ++|++|+++++....       ..+..+++|+++++..+....  .....+ ..+...+++++.|.++.+.|
T Consensus       199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~--~~~~~l~~~~~~~~~~L~~L~L~~n~l  268 (461)
T 1z7x_W          199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD--VGMAELCPGLLHPSSRLRTLWIWECGI  268 (461)
T ss_dssp             CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH--HHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh--HHHHHHHHHHhcCCCCceEEECcCCCC
Confidence            467777776664331       123456677766664332100  000011 22333567777777776654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.02  E-value=1e-06  Score=79.31  Aligned_cols=40  Identities=18%  Similarity=0.250  Sum_probs=36.7

Q ss_pred             CCCCCCCchHHHHHHhcCCChhhhhhhccchhhhHhhhCC
Q 038991            1 QDRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTS   40 (287)
Q Consensus         1 ~D~is~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~lw~~   40 (287)
                      +|.|+.||+|++.+||+|||.+++++++.|||+|+++...
T Consensus        12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999999999999999987544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.02  E-value=1.5e-05  Score=74.15  Aligned_cols=79  Identities=16%  Similarity=0.127  Sum_probs=42.3

Q ss_pred             CCceEEEEEEecCccccC-CCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991           93 RDVRELELNIENQQRLEL-PESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE  170 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~  170 (287)
                      .++++|+++.+..  ..+ |..+..+++|++|+|+++.+..+|..  .+++|+.|+| +..+.+ -.....+..+++|+.
T Consensus        76 ~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~-l~~p~~~~~l~~L~~  150 (562)
T 3a79_B           76 SELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDV-LPVCKEFGNLTKLTF  150 (562)
T ss_dssp             TTCCEEECCSCCC--CEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSB-CCCCGGGGGCTTCCE
T ss_pred             CCccEEECCCCCC--CcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccc-cCchHhhcccCcccE
Confidence            4566666654432  222 33344556666666666665555522  5666666666 554432 111123555666666


Q ss_pred             EEeeee
Q 038991          171 LCLKVY  176 (287)
Q Consensus       171 L~l~~c  176 (287)
                      |+++++
T Consensus       151 L~L~~n  156 (562)
T 3a79_B          151 LGLSAA  156 (562)
T ss_dssp             EEEECS
T ss_pred             EecCCC
Confidence            666666

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.01  E-value=3.6e-07  Score=76.81  Aligned_cols=57  Identities=12%  Similarity=0.060  Sum_probs=26.3

Q ss_pred             CcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991          114 IYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY  176 (287)
Q Consensus       114 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c  176 (287)
                      +..+++|++|+|+++.+..++ .... ++|+.|+| +..+.+-.    -+..+++|+.|+++++
T Consensus        81 l~~l~~L~~L~L~~N~l~~l~-~~~~-~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~Ls~N  138 (263)
T 1xeu_A           81 LKDLTKLEELSVNRNRLKNLN-GIPS-ACLSRLFLDNNELRDTD----SLIHLKNLEILSIRNN  138 (263)
T ss_dssp             GTTCSSCCEEECCSSCCSCCT-TCCC-SSCCEEECCSSCCSBSG----GGTTCTTCCEEECTTS
T ss_pred             hccCCCCCEEECCCCccCCcC-cccc-CcccEEEccCCccCCCh----hhcCcccccEEECCCC
Confidence            334455555555555444433 1112 55555555 44443211    1444555555555555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.99  E-value=2e-06  Score=80.26  Aligned_cols=98  Identities=8%  Similarity=-0.058  Sum_probs=45.2

Q ss_pred             cCCccceEEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccceeeecCCC
Q 038991          164 SCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYEVHDLQF  243 (287)
Q Consensus       164 ~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~  243 (287)
                      .+++|+.|+++++ ...+ +..   ..++|+.|.++++  ..    .+ ...  +. ++|+.|+++++....+.- -.++
T Consensus       138 ~l~~L~~L~Ls~N-~l~~-lp~---~l~~L~~L~Ls~N--~L----~~-lp~--l~-~~L~~L~Ls~N~L~~lp~-~~~~  201 (571)
T 3cvr_A          138 LPALLEYINADNN-QLTM-LPE---LPTSLEVLSVRNN--QL----TF-LPE--LP-ESLEALDVSTNLLESLPA-VPVR  201 (571)
T ss_dssp             CCTTCCEEECCSS-CCSC-CCC---CCTTCCEEECCSS--CC----SC-CCC--CC-TTCCEEECCSSCCSSCCC-CC--
T ss_pred             cCccccEEeCCCC-ccCc-CCC---cCCCcCEEECCCC--CC----CC-cch--hh-CCCCEEECcCCCCCchhh-HHHh
Confidence            4556666666666 4443 332   3456666666665  21    22 111  21 666666666664431111 0013


Q ss_pred             c-------eeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          244 L-------QTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       244 L-------~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      |       +.++++.+...       .+..-+..+++++.|.++.|.|
T Consensus       202 L~~~~~~L~~L~Ls~N~l~-------~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          202 NHHSEETEIFFRCRENRIT-------HIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             ------CCEEEECCSSCCC-------CCCGGGGGSCTTEEEECCSSSC
T ss_pred             hhcccccceEEecCCCcce-------ecCHHHhcCCCCCEEEeeCCcC
Confidence            4       44444322111       1112233477777777777765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.99  E-value=6.1e-09  Score=94.37  Aligned_cols=162  Identities=15%  Similarity=0.078  Sum_probs=80.9

Q ss_pred             CcCCCcccEEEeceeecccc------CCCcccCCCccEEEE-EEEeCCcch---HHHHHccCCccceEEeeeeeccCCCe
Q 038991          114 IYSCRSLEVLKLDYDFDIAV------PVSGMCFPNLKFLRV-SLQYPENQL---TEKLFSSCPSIEELCLKVYLKYDGPA  183 (287)
Q Consensus       114 ~~~~~~L~~L~L~~~~~~~~------~~~~~~~~~L~~L~L-~~~~~~~~~---l~~l~~~cp~Le~L~l~~c~~~~~~~  183 (287)
                      +..+++|++|++++|.+.+.      +.....+++|+.|+| ++.+.+ .+   +...+..||+|+.|++++| ...+ .
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~-~  299 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA-KGCGDLCRVLRAKESLKELSLAGN-ELGD-E  299 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH-HHHHHHHHHHHHCTTCCEEECTTC-CCHH-H
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH-HHHHHHHHHHhhCCCcceEECCCC-CCch-H
Confidence            33456666666666644321      100113666777777 665543 22   3444556777777777766 4322 1


Q ss_pred             eeEEE------ECCCcceEEEEEeeccccccccCC--cccEEEEcCccEEEEEEeccccce---eee-----cCCCceeE
Q 038991          184 TNFII------SSSTLKRFYWTVLVDDYNFAFNNF--HHNCLIMAPLLQLLHVVDDLMVSY---EVH-----DLQFLQTV  247 (287)
Q Consensus       184 ~~l~i------~~~~Lk~L~l~~~~~~~~~~~~~~--~~~~~i~ap~L~~L~l~~~~~~~~---~~~-----~~p~L~~~  247 (287)
                      ....+      ..++|+.|.+.+|  ...  ..+.  .....-..|+|++|+++++.....   .+.     ..++|+++
T Consensus       300 ~~~~l~~~l~~~~~~L~~L~L~~n--~l~--~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L  375 (461)
T 1z7x_W          300 GARLLCETLLEPGCQLESLWVKSC--SFT--AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL  375 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTS--CCB--GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             HHHHHHHHhccCCccceeeEcCCC--CCc--hHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEE
Confidence            10001      1146777777766  221  0000  000111237777777777654311   111     15677777


Q ss_pred             EEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          248 NLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       248 ~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      ++..+....  .....+...+..+++++.|+++.|.|
T Consensus       376 ~L~~n~i~~--~~~~~l~~~l~~~~~L~~L~l~~N~i  410 (461)
T 1z7x_W          376 WLADCDVSD--SSCSSLAATLLANHSLRELDLSNNCL  410 (461)
T ss_dssp             ECTTSCCCH--HHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred             ECCCCCCCh--hhHHHHHHHHHhCCCccEEECCCCCC
Confidence            765432110  01124566677788888888887765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.99  E-value=6.7e-07  Score=72.16  Aligned_cols=56  Identities=18%  Similarity=0.148  Sum_probs=25.5

Q ss_pred             cccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991          119 SLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY  176 (287)
Q Consensus       119 ~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c  176 (287)
                      +|++|+++++.+...+.. ...+++|+.|+| +..+..  .....+..+++|+.|++.++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS--LPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc--cChhhcCCCCCcCEEECCCC
Confidence            455555555544433321 234555555555 443322  11122344555555555555

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.97  E-value=2.9e-07  Score=74.31  Aligned_cols=141  Identities=16%  Similarity=0.139  Sum_probs=88.3

Q ss_pred             CCceEEEEEEecCccccCCCC-CcCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991           93 RDVRELELNIENQQRLELPES-IYSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE  169 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le  169 (287)
                      ..+++|+++.+..  ..++.. +..+++|++|+++++.+..++.. ...+++|+.|+| +..+..  .....+..+++|+
T Consensus        28 ~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~  103 (208)
T 2o6s_A           28 AQTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS--LPNGVFDKLTQLK  103 (208)
T ss_dssp             TTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCC
T ss_pred             CCCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc--cCHhHhcCccCCC
Confidence            4788888866543  344443 44678999999999877666533 357899999999 776653  1223467889999


Q ss_pred             eEEeeeeeccCCCeeeEE-EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccceeeecCCCceeEE
Q 038991          170 ELCLKVYLKYDGPATNFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYEVHDLQFLQTVN  248 (287)
Q Consensus       170 ~L~l~~c~~~~~~~~~l~-i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~  248 (287)
                      .|++.++ ...+ ...-. -..++|+.|.+.++  ..    .+......-..++|+.|++.++..    .+.+|+|+.+.
T Consensus       104 ~L~L~~N-~l~~-~~~~~~~~l~~L~~L~l~~N--~l----~~~~~~~~~~l~~L~~L~l~~N~~----~~~~~~l~~L~  171 (208)
T 2o6s_A          104 ELALNTN-QLQS-LPDGVFDKLTQLKDLRLYQN--QL----KSVPDGVFDRLTSLQYIWLHDNPW----DCTCPGIRYLS  171 (208)
T ss_dssp             EEECCSS-CCCC-CCTTTTTTCTTCCEEECCSS--CC----SCCCTTTTTTCTTCCEEECCSCCB----CCCTTTTHHHH
T ss_pred             EEEcCCC-cCcc-cCHhHhccCCcCCEEECCCC--cc----ceeCHHHhccCCCccEEEecCCCe----ecCCCCHHHHH
Confidence            9999998 6544 22111 13467888888777  32    111111122357888888877743    23455565554


Q ss_pred             E
Q 038991          249 L  249 (287)
Q Consensus       249 l  249 (287)
                      +
T Consensus       172 ~  172 (208)
T 2o6s_A          172 E  172 (208)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.97  E-value=3e-06  Score=74.53  Aligned_cols=17  Identities=12%  Similarity=0.223  Sum_probs=10.0

Q ss_pred             HhcCCcceEEEEecCee
Q 038991          268 LNGILNCKSLTLSSGVI  284 (287)
Q Consensus       268 l~~l~~v~~L~l~~~~i  284 (287)
                      ++.+++++.|+++.|.|
T Consensus       303 L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          303 VDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             HHHHTTCSEEECCSBBC
T ss_pred             cccCCcceEEECCCCcC
Confidence            34566666666665543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.95  E-value=5.1e-07  Score=73.79  Aligned_cols=133  Identities=18%  Similarity=0.211  Sum_probs=69.8

Q ss_pred             ccCCCCCcCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeee
Q 038991          108 LELPESIYSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATN  185 (287)
Q Consensus       108 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~  185 (287)
                      ..+|..+.  ++|+.|+|+++.+..++. ....+++|+.|+| +..+..  .....+.++++|+.|+|+++ .... +..
T Consensus        24 ~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~--~~~~~~~~l~~L~~L~Ls~N-~l~~-l~~   97 (220)
T 2v9t_B           24 TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE--LAPDAFQGLRSLNSLVLYGN-KITE-LPK   97 (220)
T ss_dssp             SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE--ECTTTTTTCSSCCEEECCSS-CCCC-CCT
T ss_pred             CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC--cCHHHhhCCcCCCEEECCCC-cCCc-cCH
Confidence            34444332  567777777766555432 3345677777777 554432  11223556677777777777 4433 211


Q ss_pred             EE-EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---eeecCCCceeEEEEEE
Q 038991          186 FI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---EVHDLQFLQTVNLAIL  252 (287)
Q Consensus       186 l~-i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~~~  252 (287)
                      -. -..++|+.|.++++  ..    .+......-..++|+.|+++++.....   .+..+++|+.+++..+
T Consensus        98 ~~f~~l~~L~~L~L~~N--~l----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           98 SLFEGLFSLQLLLLNAN--KI----NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             TTTTTCTTCCEEECCSS--CC----CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             hHccCCCCCCEEECCCC--CC----CEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence            11 12456777777666  22    110111111346777777777655422   2456677777666544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.95  E-value=5.3e-07  Score=74.12  Aligned_cols=133  Identities=18%  Similarity=0.092  Sum_probs=78.3

Q ss_pred             cccCCCCCcCCCcccEEEeceeecccc-CCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCee
Q 038991          107 RLELPESIYSCRSLEVLKLDYDFDIAV-PVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPAT  184 (287)
Q Consensus       107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~  184 (287)
                      ...+|..+.  ++|++|+|+++.+... +.....+++|+.|+| +..+..  .-...+.++++|+.|+|+++ ...+ +.
T Consensus        31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~~L~~L~Ls~N-~l~~-l~  104 (229)
T 3e6j_A           31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--LPVGVFDSLTQLTVLDLGTN-QLTV-LP  104 (229)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCC-CC
T ss_pred             cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC--cChhhcccCCCcCEEECCCC-cCCc-cC
Confidence            344554332  6688888888776554 323456788888888 665532  11234567788888888887 5543 22


Q ss_pred             eEE-EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---eeecCCCceeEEEEEE
Q 038991          185 NFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---EVHDLQFLQTVNLAIL  252 (287)
Q Consensus       185 ~l~-i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~~~  252 (287)
                      .-. -..++|+.|.++++  ...    . .....-..++|+.|+++++....+   .+..+++|+.+++..+
T Consensus       105 ~~~~~~l~~L~~L~Ls~N--~l~----~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          105 SAVFDRLVHLKELFMCCN--KLT----E-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             TTTTTTCTTCCEEECCSS--CCC----S-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             hhHhCcchhhCeEeccCC--ccc----c-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            111 13467777777776  321    1 111113457888888887765422   3566778887776544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.95  E-value=5e-08  Score=85.86  Aligned_cols=184  Identities=14%  Similarity=0.104  Sum_probs=114.4

Q ss_pred             CCceEEEEEEecCcccc---CCCCCcCCC-cccEEEeceeeccccCC-Cccc-----CCCccEEEE-EEEeCCc--chHH
Q 038991           93 RDVRELELNIENQQRLE---LPESIYSCR-SLEVLKLDYDFDIAVPV-SGMC-----FPNLKFLRV-SLQYPEN--QLTE  159 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~---l~~~~~~~~-~L~~L~L~~~~~~~~~~-~~~~-----~~~L~~L~L-~~~~~~~--~~l~  159 (287)
                      +++++|+++.+......   +...+..++ +|++|+|++|.+.+... ....     +++|+.|+| ++.+.+.  ..+.
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            46999998766532111   112334456 89999999997755321 1222     399999999 8887642  2355


Q ss_pred             HHHccC-CccceEEeeeeeccCCCeeeEEE----E--CCCcceEEEEEeeccccccccCCcccE---EEEc-CccEEEEE
Q 038991          160 KLFSSC-PSIEELCLKVYLKYDGPATNFII----S--SSTLKRFYWTVLVDDYNFAFNNFHHNC---LIMA-PLLQLLHV  228 (287)
Q Consensus       160 ~l~~~c-p~Le~L~l~~c~~~~~~~~~l~i----~--~~~Lk~L~l~~~~~~~~~~~~~~~~~~---~i~a-p~L~~L~l  228 (287)
                      ..+..+ ++|+.|++++| ...+ ...-.+    .  .++|+.|.+++|  ...  ..+ ...+   .-.. ++|++|++
T Consensus       102 ~~l~~~~~~L~~L~Ls~N-~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N--~l~--~~~-~~~l~~~l~~~~~~L~~L~L  174 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWN-DFSS-KSSSEFKQAFSNLPASITSLNLRGN--DLG--IKS-SDELIQILAAIPANVNSLNL  174 (362)
T ss_dssp             HHHHTSCTTCCEEECCSS-CGGG-SCHHHHHHHHTTSCTTCCEEECTTS--CGG--GSC-HHHHHHHHHTSCTTCCEEEC
T ss_pred             HHHHhCCCCccEEECcCC-cCCc-HHHHHHHHHHHhCCCceeEEEccCC--cCC--HHH-HHHHHHHHhcCCccccEeee
Confidence            667777 89999999999 6644 221111    1  359999999998  332  011 0011   0123 49999999


Q ss_pred             Eeccccce-------eeecC-CCceeEEEEEEEccccccChhhHHHHHhcC-CcceEEEEecCeeE
Q 038991          229 VDDLMVSY-------EVHDL-QFLQTVNLAILFLQWSVLNPWEVVQLLNGI-LNCKSLTLSSGVIL  285 (287)
Q Consensus       229 ~~~~~~~~-------~~~~~-p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l-~~v~~L~l~~~~i~  285 (287)
                      +++.....       .+... ++|+.++++.+...  ......+...+... ++++.|+++.|.|.
T Consensus       175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~--~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLG--LKSYAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG--GSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC--hhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence            98865411       23445 48999998654321  11223466666664 59999999998764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.94  E-value=5.6e-07  Score=74.27  Aligned_cols=165  Identities=10%  Similarity=0.100  Sum_probs=105.9

Q ss_pred             CCceEEEEEEecCccccCCC-CCcCCCcccEEEece-eeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCcc
Q 038991           93 RDVRELELNIENQQRLELPE-SIYSCRSLEVLKLDY-DFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSI  168 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~-~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~L  168 (287)
                      .+++.|++..+.. ...++. .+..+++|++|++++ +.+..++. ....+++|+.|++ +..+..-.   . +..+++|
T Consensus        55 ~~L~~L~l~~n~~-l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp---~-~~~l~~L  129 (239)
T 2xwt_C           55 PNISRIYVSIDVT-LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP---D-LTKVYST  129 (239)
T ss_dssp             TTCCEEEEECCSS-CCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCC---C-CTTCCBC
T ss_pred             CCCcEEeCCCCCC-cceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccc---c-ccccccc
Confidence            5899999987641 234444 455679999999998 66655542 4458999999999 88776522   2 6788899


Q ss_pred             c---eEEeeeeeccCCCeeeEEE----ECCCcc-eEEEEEeeccccccccCCcccEEEEcCccEEEEEEecc-ccc---e
Q 038991          169 E---ELCLKVYLKYDGPATNFII----SSSTLK-RFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDL-MVS---Y  236 (287)
Q Consensus       169 e---~L~l~~c~~~~~~~~~l~i----~~~~Lk-~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~-~~~---~  236 (287)
                      +   .|++.++ ..   +..+..    ..++|+ .|.+.++  ... .+.    ......++|++|++.++. ...   .
T Consensus       130 ~~L~~L~l~~N-~~---l~~i~~~~~~~l~~L~~~L~l~~n--~l~-~i~----~~~~~~~~L~~L~L~~n~~l~~i~~~  198 (239)
T 2xwt_C          130 DIFFILEITDN-PY---MTSIPVNAFQGLCNETLTLKLYNN--GFT-SVQ----GYAFNGTKLDAVYLNKNKYLTVIDKD  198 (239)
T ss_dssp             CSEEEEEEESC-TT---CCEECTTTTTTTBSSEEEEECCSC--CCC-EEC----TTTTTTCEEEEEECTTCTTCCEECTT
T ss_pred             ccccEEECCCC-cc---hhhcCcccccchhcceeEEEcCCC--CCc-ccC----HhhcCCCCCCEEEcCCCCCcccCCHH
Confidence            8   9999887 21   222221    246788 8888776  321 111    111122689999999884 442   3


Q ss_pred             eeecC-CCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecC
Q 038991          237 EVHDL-QFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSG  282 (287)
Q Consensus       237 ~~~~~-p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~  282 (287)
                      .+.++ ++|+.+++...... .. ..       ..+++++.|.++.+
T Consensus       199 ~~~~l~~~L~~L~l~~N~l~-~l-~~-------~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          199 AFGGVYSGPSLLDVSQTSVT-AL-PS-------KGLEHLKELIARNT  236 (239)
T ss_dssp             TTTTCSBCCSEEECTTCCCC-CC-CC-------TTCTTCSEEECTTC
T ss_pred             HhhccccCCcEEECCCCccc-cC-Ch-------hHhccCceeeccCc
Confidence            45677 89999988643221 11 11       16788999888753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.94  E-value=5.5e-08  Score=85.60  Aligned_cols=184  Identities=13%  Similarity=0.068  Sum_probs=109.0

Q ss_pred             CCceEEEEEEecCcc---ccCCCCCcCC-CcccEEEeceeeccccCCCc-----cc-CCCccEEEE-EEEeCCcc--hHH
Q 038991           93 RDVRELELNIENQQR---LELPESIYSC-RSLEVLKLDYDFDIAVPVSG-----MC-FPNLKFLRV-SLQYPENQ--LTE  159 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~---~~l~~~~~~~-~~L~~L~L~~~~~~~~~~~~-----~~-~~~L~~L~L-~~~~~~~~--~l~  159 (287)
                      ..+++|+++.+....   ..+...+..+ ++|++|+|++|.+.+.+...     .. .++|+.|+| +..+.+..  .+.
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            688988887665321   1111112333 68999999988775543111     12 358999999 87776422  344


Q ss_pred             HHHccCC-ccceEEeeeeeccCCCeeeEEE-----EC-CCcceEEEEEeeccccccccCCcccE--EE-E-cCccEEEEE
Q 038991          160 KLFSSCP-SIEELCLKVYLKYDGPATNFII-----SS-STLKRFYWTVLVDDYNFAFNNFHHNC--LI-M-APLLQLLHV  228 (287)
Q Consensus       160 ~l~~~cp-~Le~L~l~~c~~~~~~~~~l~i-----~~-~~Lk~L~l~~~~~~~~~~~~~~~~~~--~i-~-ap~L~~L~l  228 (287)
                      ..+..+| +|+.|++++| ...+ .....+     .. ++|+.|+++++  ...  ..+ ...+  .+ . .++|++|++
T Consensus       160 ~~l~~~~~~L~~L~Ls~n-~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N--~i~--~~~-~~~l~~~l~~~~~~L~~L~L  232 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGN-NLAS-KNCAELAKFLASIPASVTSLDLSAN--LLG--LKS-YAELAYIFSSIPNHVVSLNL  232 (362)
T ss_dssp             HHHHTSCTTCCEEECTTS-CGGG-SCHHHHHHHHHTSCTTCCEEECTTS--CGG--GSC-HHHHHHHHHHSCTTCCEEEC
T ss_pred             HHHhcCCccccEeeecCC-CCch-hhHHHHHHHHHhCCCCCCEEECCCC--CCC--hhH-HHHHHHHHhcCCCCceEEEC
Confidence            5556666 8999999999 6543 221111     23 48999999888  332  011 0000  11 1 358999999


Q ss_pred             Eeccccce-------eeecCCCceeEEEEEEEccccccChh---hHHHHHhcCCcceEEEEecCeeE
Q 038991          229 VDDLMVSY-------EVHDLQFLQTVNLAILFLQWSVLNPW---EVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       229 ~~~~~~~~-------~~~~~p~L~~~~l~~~~~~~~~~~~~---~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      +++.....       .+..+++|+.++++.+...  .....   .+...+..+++++.|+++.|.|.
T Consensus       233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~--~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK--NMSKEQCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT--TCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             cCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc--ccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence            98875422       2356788999988765311  11122   23444556677888888887764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.93  E-value=5.8e-06  Score=77.10  Aligned_cols=161  Identities=15%  Similarity=0.160  Sum_probs=108.1

Q ss_pred             cCCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991           92 MRDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE  170 (287)
Q Consensus        92 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~  170 (287)
                      .++++.|+++.+..  ..+|..++  ++|++|+|+++.+..+|   ..+++|+.|+| +..+..   +.. +.  .+|+.
T Consensus        58 ~~~L~~L~Ls~n~L--~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~---ip~-l~--~~L~~  124 (571)
T 3cvr_A           58 INQFSELQLNRLNL--SSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLST---LPE-LP--ASLKH  124 (571)
T ss_dssp             HTTCSEEECCSSCC--SCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC---CCC-CC--TTCCE
T ss_pred             cCCccEEEeCCCCC--CccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC---cch-hh--cCCCE
Confidence            35899999876543  34776554  78999999999887776   56899999999 876654   222 22  29999


Q ss_pred             EEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccccee-eecCCCceeEEE
Q 038991          171 LCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYE-VHDLQFLQTVNL  249 (287)
Q Consensus       171 L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~-~~~~p~L~~~~l  249 (287)
                      |+++++ ...+ +..   ..++|+.|.++++  ..    .+ ...   ..++|+.|+++++....+. +.  ++|+.+++
T Consensus       125 L~Ls~N-~l~~-lp~---~l~~L~~L~Ls~N--~l----~~-lp~---~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~L  187 (571)
T 3cvr_A          125 LDVDNN-QLTM-LPE---LPALLEYINADNN--QL----TM-LPE---LPTSLEVLSVRNNQLTFLPELP--ESLEALDV  187 (571)
T ss_dssp             EECCSS-CCSC-CCC---CCTTCCEEECCSS--CC----SC-CCC---CCTTCCEEECCSSCCSCCCCCC--TTCCEEEC
T ss_pred             EECCCC-cCCC-CCC---cCccccEEeCCCC--cc----Cc-CCC---cCCCcCEEECCCCCCCCcchhh--CCCCEEEC
Confidence            999999 7766 555   5789999999998  32    32 122   4689999999998755221 32  78999888


Q ss_pred             EEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991          250 AILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      ..+... .....  ..++......++.|+++.|.|.
T Consensus       188 s~N~L~-~lp~~--~~~L~~~~~~L~~L~Ls~N~l~  220 (571)
T 3cvr_A          188 STNLLE-SLPAV--PVRNHHSEETEIFFRCRENRIT  220 (571)
T ss_dssp             CSSCCS-SCCCC--C--------CCEEEECCSSCCC
T ss_pred             cCCCCC-chhhH--HHhhhcccccceEEecCCCcce
Confidence            755322 11110  0122233334499999998764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.93  E-value=5.1e-07  Score=74.22  Aligned_cols=129  Identities=18%  Similarity=0.120  Sum_probs=89.2

Q ss_pred             CCceEEEEEEecCccccC-CCCCcCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991           93 RDVRELELNIENQQRLEL-PESIYSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE  169 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le  169 (287)
                      .+++.|+++.+..  ..+ |..+..+++|++|+|+++.+..++.. ...+++|+.|+| +..+..  .....+..+++|+
T Consensus        40 ~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~~l~~L~  115 (229)
T 3e6j_A           40 TNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV--LPSAVFDRLVHLK  115 (229)
T ss_dssp             TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCC
T ss_pred             CCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc--cChhHhCcchhhC
Confidence            6889999876553  333 45566779999999999988766533 358999999999 776653  1233467899999


Q ss_pred             eEEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccc
Q 038991          170 ELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLM  233 (287)
Q Consensus       170 ~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~  233 (287)
                      .|++.++ .... +..-.-..++|+.|.++++  ..    .+......-..++|+.|++.++..
T Consensus       116 ~L~Ls~N-~l~~-lp~~~~~l~~L~~L~L~~N--~l----~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          116 ELFMCCN-KLTE-LPRGIERLTHLTHLALDQN--QL----KSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             EEECCSS-CCCS-CCTTGGGCTTCSEEECCSS--CC----CCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             eEeccCC-cccc-cCcccccCCCCCEEECCCC--cC----CccCHHHHhCCCCCCEEEeeCCCc
Confidence            9999999 6544 3211124579999999888  32    221111222458999999988764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.89  E-value=2.5e-07  Score=72.81  Aligned_cols=123  Identities=8%  Similarity=-0.004  Sum_probs=58.9

Q ss_pred             CCCcccEEEeceeeccccCCCccc-CCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeE-EEECCC
Q 038991          116 SCRSLEVLKLDYDFDIAVPVSGMC-FPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNF-IISSST  192 (287)
Q Consensus       116 ~~~~L~~L~L~~~~~~~~~~~~~~-~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l-~i~~~~  192 (287)
                      .+.+|+.|.++++.+..++ .... +|+|+.|+| +..+.+   + .-+..+++|+.|++++| ...+ ...- .-..++
T Consensus        17 ~~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~Ls~N~l~~---~-~~l~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~   89 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRK---L-DGFPLLRRLKTLLVNNN-RICR-IGEGLDQALPD   89 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCE---E-CCCCCCSSCCEEECCSS-CCCE-ECSCHHHHCTT
T ss_pred             CcCCceEEEeeCCCCchhH-HhhhcCCCCCEEECCCCCCCc---c-cccccCCCCCEEECCCC-cccc-cCcchhhcCCC
Confidence            4455666666666555444 2223 336666666 554432   1 22455666666666666 4332 1110 013455


Q ss_pred             cceEEEEEeeccccccccCCccc--EEEEcCccEEEEEEeccccc---e---eeecCCCceeEEEEEE
Q 038991          193 LKRFYWTVLVDDYNFAFNNFHHN--CLIMAPLLQLLHVVDDLMVS---Y---EVHDLQFLQTVNLAIL  252 (287)
Q Consensus       193 Lk~L~l~~~~~~~~~~~~~~~~~--~~i~ap~L~~L~l~~~~~~~---~---~~~~~p~L~~~~l~~~  252 (287)
                      |+.|.++++  ...    . ...  ..-..|+|+.|++.++....   +   .++.+|+|+.+++...
T Consensus        90 L~~L~L~~N--~i~----~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           90 LTELILTNN--SLV----E-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CCEEECCSC--CCC----C-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCEEECCCC--cCC----c-chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            666665555  211    1 000  11134666666666655431   1   2455666666655433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.87  E-value=1.3e-06  Score=83.06  Aligned_cols=173  Identities=16%  Similarity=0.182  Sum_probs=90.0

Q ss_pred             CCceEEEEEEecCccccCCC-CCcCCCcccEEEeceeecccc-CCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991           93 RDVRELELNIENQQRLELPE-SIYSCRSLEVLKLDYDFDIAV-PVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE  169 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le  169 (287)
                      .++++|+++.+..  ..++. .+..+++|++|+|+++.+... |.....+++|+.|+| +..+..  .-...+.+|++|+
T Consensus        25 ~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~  100 (680)
T 1ziw_A           25 TNITVLNLTHNQL--RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ--LSDKTFAFCTNLT  100 (680)
T ss_dssp             TTCSEEECCSSCC--CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC--CCTTTTTTCTTCS
T ss_pred             CCCcEEECCCCCC--CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc--cChhhhccCCCCC
Confidence            4667777655432  23333 345567777777777765543 223346777777777 655442  1112355677777


Q ss_pred             eEEeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce-----eeecCCC
Q 038991          170 ELCLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY-----EVHDLQF  243 (287)
Q Consensus       170 ~L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-----~~~~~p~  243 (287)
                      .|++.+| ...+ ...-.+ ..++|+.|+++++  ..    .+......-..++|++|++.++.....     ....+++
T Consensus       101 ~L~L~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n--~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  172 (680)
T 1ziw_A          101 ELHLMSN-SIQK-IKNNPFVKQKNLITLDLSHN--GL----SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS  172 (680)
T ss_dssp             EEECCSS-CCCC-CCSCTTTTCTTCCEEECCSS--CC----SCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred             EEECCCC-ccCc-cChhHccccCCCCEEECCCC--cc----cccCchhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence            7777777 5433 221111 3457777777766  22    110111112456777777776643311     1224466


Q ss_pred             ceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCe
Q 038991          244 LQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGV  283 (287)
Q Consensus       244 L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~  283 (287)
                      |+.+++..+... ..     ....+..+.+++.|.++.+.
T Consensus       173 L~~L~L~~n~l~-~~-----~~~~~~~l~~L~~L~l~~~~  206 (680)
T 1ziw_A          173 LKKLELSSNQIK-EF-----SPGCFHAIGRLFGLFLNNVQ  206 (680)
T ss_dssp             ESEEECTTCCCC-CB-----CTTGGGGSSEECEEECTTCC
T ss_pred             ccEEECCCCccc-cc-----Chhhhhhhhhhhhhhccccc
Confidence            777666433111 00     12345566777777765543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.87  E-value=6.2e-07  Score=73.27  Aligned_cols=123  Identities=15%  Similarity=0.207  Sum_probs=51.3

Q ss_pred             ccEEEeceeeccccCC--CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE-ECCCcce
Q 038991          120 LEVLKLDYDFDIAVPV--SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII-SSSTLKR  195 (287)
Q Consensus       120 L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i-~~~~Lk~  195 (287)
                      +++|.|+++.+...+.  ....+++|+.|+| +..+.+  .....+.++++|+.|+|+++ ...+ ...-.+ ..++|+.
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~--i~~~~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~  109 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD--IEEGAFEGASGVNEILLTSN-RLEN-VQHKMFKGLESLKT  109 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSS-CCCC-CCGGGGTTCSSCCE
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE--ECHHHhCCCCCCCEEECCCC-ccCc-cCHhHhcCCcCCCE
Confidence            4555555554433311  1234555555555 433321  01112344555555555555 3322 111001 2345555


Q ss_pred             EEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc---eeeecCCCceeEEEEEE
Q 038991          196 FYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS---YEVHDLQFLQTVNLAIL  252 (287)
Q Consensus       196 L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~~~~l~~~  252 (287)
                      |.++++  ..    .+.........++|+.|+++++....   ..+..+++|+.+++..+
T Consensus       110 L~Ls~N--~l----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          110 LMLRSN--RI----TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             EECTTS--CC----CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EECCCC--cC----CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence            555554  11    11000111134566666665554331   23445566666655433

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.83  E-value=8.1e-06  Score=73.13  Aligned_cols=37  Identities=27%  Similarity=0.292  Sum_probs=35.1

Q ss_pred             CCCCCCCchHHHHHHhcCCChhhhhhhccchhhhHhh
Q 038991            1 QDRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHV   37 (287)
Q Consensus         1 ~D~is~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~l   37 (287)
                      .|.++.||+|++.+||+||+.+++++++.|||+|+++
T Consensus        16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            4889999999999999999999999999999999974

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.83  E-value=4.4e-06  Score=65.50  Aligned_cols=81  Identities=9%  Similarity=-0.004  Sum_probs=61.5

Q ss_pred             CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCC--Ccc----cCCCccEEEE-EEEeCCcchHHHHHccCC
Q 038991           94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPV--SGM----CFPNLKFLRV-SLQYPENQLTEKLFSSCP  166 (287)
Q Consensus        94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~--~~~----~~~~L~~L~L-~~~~~~~~~l~~l~~~cp  166 (287)
                      .+++|+++.+...+..+.. +..|++|++|+|++|...+...  ...    .+++|+.|+| +|.-.++.++..+ +.||
T Consensus        62 ~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFR  139 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCT
T ss_pred             eEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCC
Confidence            6999999988765555543 4689999999999996543110  111    2568999999 9975566788775 6799


Q ss_pred             ccceEEeeee
Q 038991          167 SIEELCLKVY  176 (287)
Q Consensus       167 ~Le~L~l~~c  176 (287)
                      +|+.|+|.+|
T Consensus       140 ~L~~L~L~~c  149 (176)
T 3e4g_A          140 NLKYLFLSDL  149 (176)
T ss_dssp             TCCEEEEESC
T ss_pred             CCCEEECCCC
Confidence            9999999999

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.81  E-value=2.4e-07  Score=74.27  Aligned_cols=130  Identities=14%  Similarity=0.060  Sum_probs=90.2

Q ss_pred             CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcc
Q 038991          136 SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHH  214 (287)
Q Consensus       136 ~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~  214 (287)
                      ....+++|+.|+| +..+.+   +. .+..+++|+.|++.+| .... +....-..++|+.|.++++  ..    .+ ..
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~---l~-~~~~l~~L~~L~l~~n-~l~~-l~~~~~~~~~L~~L~L~~N--~l----~~-l~  109 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK---IS-SLSGMENLRILSLGRN-LIKK-IENLDAVADTLEELWISYN--QI----AS-LS  109 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC---CC-CHHHHTTCCEEEEEEE-EECS-CSSHHHHHHHCSEEEEEEE--EC----CC-HH
T ss_pred             HHhcCCCCCEEECCCCCCcc---cc-ccccCCCCCEEECCCC-Cccc-ccchhhcCCcCCEEECcCC--cC----Cc-CC
Confidence            3458999999999 988876   22 4667899999999999 6654 4432223479999999999  32    22 11


Q ss_pred             cEEEEcCccEEEEEEeccccc----eeeecCCCceeEEEEEEEccccccC----hhhHHHHHhcCCcceEEEE
Q 038991          215 NCLIMAPLLQLLHVVDDLMVS----YEVHDLQFLQTVNLAILFLQWSVLN----PWEVVQLLNGILNCKSLTL  279 (287)
Q Consensus       215 ~~~i~ap~L~~L~l~~~~~~~----~~~~~~p~L~~~~l~~~~~~~~~~~----~~~~~~~l~~l~~v~~L~l  279 (287)
                       ..-..++|+.|++.++....    ..+..+++|+.+++..+........    .......+..+++++.|+-
T Consensus       110 -~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~  181 (198)
T 1ds9_A          110 -GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             -HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred             -ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence             12246899999999987652    2467899999999875532111000    2234566899999999873

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.80  E-value=1.1e-06  Score=71.74  Aligned_cols=129  Identities=15%  Similarity=0.149  Sum_probs=85.9

Q ss_pred             CCceEEEEEEecCccccCCC-CCcCCCcccEEEeceeecccc-CCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991           93 RDVRELELNIENQQRLELPE-SIYSCRSLEVLKLDYDFDIAV-PVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE  169 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le  169 (287)
                      ..+++|++..+..  ..++. .+..+++|++|+|+++.+..+ +.....+++|+.|+| +..+..  .-..++.++++|+
T Consensus        32 ~~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~  107 (220)
T 2v9t_B           32 ETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE--LPKSLFEGLFSLQ  107 (220)
T ss_dssp             TTCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC--CCTTTTTTCTTCC
T ss_pred             cCCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc--cCHhHccCCCCCC
Confidence            4788888866543  34444 455678999999999877664 435668899999999 776653  1223467889999


Q ss_pred             eEEeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccc
Q 038991          170 ELCLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLM  233 (287)
Q Consensus       170 ~L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~  233 (287)
                      .|+|.++ ...+ ...-.+ ..++|+.|.+.++  ..    .+......-..++|+.|++.++..
T Consensus       108 ~L~L~~N-~l~~-~~~~~~~~l~~L~~L~L~~N--~l----~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          108 LLLLNAN-KINC-LRVDAFQDLHNLNLLSLYDN--KL----QTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             EEECCSS-CCCC-CCTTTTTTCTTCCEEECCSS--CC----SCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             EEECCCC-CCCE-eCHHHcCCCCCCCEEECCCC--cC----CEECHHHHhCCCCCCEEEeCCCCc
Confidence            9999999 6544 221111 3578999999888  32    221111122368899999988764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.77  E-value=4.5e-06  Score=74.71  Aligned_cols=37  Identities=30%  Similarity=0.412  Sum_probs=34.6

Q ss_pred             CCCCCCCchH----HHHHHhcCCChhhhhhhccchhhhHhh
Q 038991            1 QDRNSSLLDS----VLCNILSFLTTKIDVATCILSSRWRHV   37 (287)
Q Consensus         1 ~D~is~LPd~----vL~~Ils~L~~~~~~~~s~vSkrW~~l   37 (287)
                      .|.|+.||+|    ++.+||+||+.+++++++.|||+|+++
T Consensus         8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~   48 (435)
T 1p22_A            8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (435)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            4788999999    999999999999999999999999953

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.76  E-value=4.4e-06  Score=75.82  Aligned_cols=94  Identities=14%  Similarity=0.153  Sum_probs=52.7

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      .++++|+++.+..  ..+| .+..+++|++|+++++.+..+|.   ..++|+.|++ +..+.+-   .. +..+++|+.|
T Consensus       131 ~~L~~L~L~~n~l--~~lp-~~~~l~~L~~L~l~~N~l~~lp~---~~~~L~~L~L~~n~l~~l---~~-~~~l~~L~~L  200 (454)
T 1jl5_A          131 PLLEYLGVSNNQL--EKLP-ELQNSSFLKIIDVDNNSLKKLPD---LPPSLEFIAAGNNQLEEL---PE-LQNLPFLTAI  200 (454)
T ss_dssp             TTCCEEECCSSCC--SSCC-CCTTCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSC---CC-CTTCTTCCEE
T ss_pred             CCCCEEECcCCCC--CCCc-ccCCCCCCCEEECCCCcCcccCC---CcccccEEECcCCcCCcC---cc-ccCCCCCCEE
Confidence            4566666654432  2345 35566777777777766554441   2356777777 6554431   11 4567777777


Q ss_pred             EeeeeeccCCCeeeEEEECCCcceEEEEEe
Q 038991          172 CLKVYLKYDGPATNFIISSSTLKRFYWTVL  201 (287)
Q Consensus       172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~  201 (287)
                      ++.+| ...+ +..   ..++|+.|.+.++
T Consensus       201 ~l~~N-~l~~-l~~---~~~~L~~L~l~~n  225 (454)
T 1jl5_A          201 YADNN-SLKK-LPD---LPLSLESIVAGNN  225 (454)
T ss_dssp             ECCSS-CCSS-CCC---CCTTCCEEECCSS
T ss_pred             ECCCC-cCCc-CCC---CcCcccEEECcCC
Confidence            77777 5443 221   1246666666665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.76  E-value=7.3e-06  Score=72.10  Aligned_cols=152  Identities=20%  Similarity=0.234  Sum_probs=94.7

Q ss_pred             CCceEEEEEEecCc--------cccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHH-
Q 038991           93 RDVRELELNIENQQ--------RLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLF-  162 (287)
Q Consensus        93 ~~l~~L~l~~~~~~--------~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~-  162 (287)
                      .++++|.+......        ...+...+..+++|++|.|+++....++ . ...++|+.|.| .+.+.+ ..+..+. 
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~-~-~~~~~L~~L~L~~~~l~~-~~l~~l~~  215 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIG-K-KPRPNLKSLEIISGGLPD-SVVEDILG  215 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCC-S-CBCTTCSEEEEECSBCCH-HHHHHHHH
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceec-c-ccCCCCcEEEEecCCCCh-HHHHHHHH
Confidence            59999988432111        0123344456789999999988544444 2 45899999999 777643 5566655 


Q ss_pred             ccCCccceEEeeeee-ccCC-C-e---e-eEEE-ECCCcceEEEEEeeccccccccCCcccEE--EEcCccEEEEEEecc
Q 038991          163 SSCPSIEELCLKVYL-KYDG-P-A---T-NFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNCL--IMAPLLQLLHVVDDL  232 (287)
Q Consensus       163 ~~cp~Le~L~l~~c~-~~~~-~-~---~-~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~--i~ap~L~~L~l~~~~  232 (287)
                      ..+|+||.|+|..+. ...+ . +   . .+.. ..|+|+.|.+.+|  ...   +.....+.  -..|+|++|+++.+.
T Consensus       216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~--~i~---~~~~~~la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA--EEQ---NVVVEMFLESDILPQLETMDISAGV  290 (362)
T ss_dssp             SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC--TTH---HHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred             ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC--CCc---hHHHHHHHhCccCCCCCEEECCCCC
Confidence            479999999996431 1111 0 1   1 1111 3689999999998  321   10000110  136899999998775


Q ss_pred             ccc-----e--eeecCCCceeEEEEEE
Q 038991          233 MVS-----Y--EVHDLQFLQTVNLAIL  252 (287)
Q Consensus       233 ~~~-----~--~~~~~p~L~~~~l~~~  252 (287)
                      ...     +  .+.++++|+.+++..+
T Consensus       291 L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          291 LTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             CBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             CChHHHHHHHhhcccCCcceEEECCCC
Confidence            432     1  2246789999998644

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.75  E-value=1.4e-06  Score=81.56  Aligned_cols=129  Identities=19%  Similarity=0.158  Sum_probs=88.4

Q ss_pred             CCceEEEEEEecCccccCCC-CCcCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991           93 RDVRELELNIENQQRLELPE-SIYSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE  169 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le  169 (287)
                      ..+++|+|+.+.  ...+|+ .+..+++|++|+|++|.+..++. ....+++|++|+| +..+..  .-...+.++++|+
T Consensus        52 ~~~~~LdLs~N~--i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~--l~~~~f~~L~~L~  127 (635)
T 4g8a_A           52 FSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSSLQ  127 (635)
T ss_dssp             TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECGGGGTTCTTCC
T ss_pred             cCCCEEEeeCCC--CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC--CCHHHhcCCCCCC
Confidence            578899987654  345554 45668999999999998776653 3467999999999 776542  1123578899999


Q ss_pred             eEEeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCC-cccEEEEcCccEEEEEEeccc
Q 038991          170 ELCLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNF-HHNCLIMAPLLQLLHVVDDLM  233 (287)
Q Consensus       170 ~L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~-~~~~~i~ap~L~~L~l~~~~~  233 (287)
                      +|++.+| ...+ +....+ ..++|+.|.++++  ..    .+. .....-..++|++|+++++..
T Consensus       128 ~L~Ls~N-~l~~-l~~~~~~~L~~L~~L~Ls~N--~l----~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          128 KLVAVET-NLAS-LENFPIGHLKTLKELNVAHN--LI----QSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             EEECTTS-CCCC-STTCCCTTCTTCCEEECCSS--CC----CCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             EEECCCC-cCCC-CChhhhhcCcccCeeccccC--cc----ccCCCchhhccchhhhhhcccCccc
Confidence            9999999 6655 433333 4578999999887  32    110 111222458899998887654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.74  E-value=1.7e-06  Score=70.67  Aligned_cols=131  Identities=13%  Similarity=0.081  Sum_probs=85.2

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE  170 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~  170 (287)
                      ..+++|+++.+.......+..+..+++|++|+|+++.+..++. ....+++|+.|+| +..+..  .....+.++++|+.
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~  109 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN--VQHKMFKGLESLKT  109 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC--CCGGGGTTCSSCCE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc--cCHhHhcCCcCCCE
Confidence            4567777765543222112335567899999999988766543 4568899999999 776653  22334678999999


Q ss_pred             EEeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccc
Q 038991          171 LCLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLM  233 (287)
Q Consensus       171 L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~  233 (287)
                      |+|+++ ...+ ...-.+ ..++|+.|.+.++  ..    .+......-..++|++|++.++..
T Consensus       110 L~Ls~N-~l~~-~~~~~~~~l~~L~~L~L~~N--~l----~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          110 LMLRSN-RITC-VGNDSFIGLSSVRLLSLYDN--QI----TTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             EECTTS-CCCC-BCTTSSTTCTTCSEEECTTS--CC----CCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             EECCCC-cCCe-ECHhHcCCCccCCEEECCCC--cC----CEECHHHhcCCCCCCEEEecCcCC
Confidence            999999 6554 321111 4578999999887  32    221111122468999999988764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.73  E-value=1.3e-06  Score=76.76  Aligned_cols=32  Identities=22%  Similarity=0.267  Sum_probs=13.3

Q ss_pred             CCcccEEEeceeeccccCC-CcccCCCccEEEE
Q 038991          117 CRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV  148 (287)
Q Consensus       117 ~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L  148 (287)
                      +++|++|+|+++.+..++. ....+++|+.|+|
T Consensus        63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            3444444444444333221 2234444444444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.69  E-value=6e-06  Score=74.89  Aligned_cols=114  Identities=17%  Similarity=0.133  Sum_probs=60.2

Q ss_pred             CcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCcceE
Q 038991          118 RSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKRF  196 (287)
Q Consensus       118 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L  196 (287)
                      ++|++|++++|.+..+| ....+++|+.|++ +..+.+      +-...++|+.|++.+| ...+ ...+ -..++|+.|
T Consensus       131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~------lp~~~~~L~~L~L~~n-~l~~-l~~~-~~l~~L~~L  200 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK------LPDLPPSLEFIAAGNN-QLEE-LPEL-QNLPFLTAI  200 (454)
T ss_dssp             TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC------CCCCCTTCCEEECCSS-CCSS-CCCC-TTCTTCCEE
T ss_pred             CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc------cCCCcccccEEECcCC-cCCc-Cccc-cCCCCCCEE
Confidence            45666666666555555 4555666666666 544432      1112346666666666 5443 3321 134566666


Q ss_pred             EEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce-eeecCCCceeEEEEE
Q 038991          197 YWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY-EVHDLQFLQTVNLAI  251 (287)
Q Consensus       197 ~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~~  251 (287)
                      .+.++  ..    .+    +.-..++|++|+++++....+ .++.+++|+.++++.
T Consensus       201 ~l~~N--~l----~~----l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~  246 (454)
T 1jl5_A          201 YADNN--SL----KK----LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN  246 (454)
T ss_dssp             ECCSS--CC----SS----CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCS
T ss_pred             ECCCC--cC----Cc----CCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCC
Confidence            66666  21    11    001125777777776654311 355677777777653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.69  E-value=3e-06  Score=79.34  Aligned_cols=134  Identities=16%  Similarity=0.169  Sum_probs=91.3

Q ss_pred             cccCCCCCcCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCee
Q 038991          107 RLELPESIYSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPAT  184 (287)
Q Consensus       107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~  184 (287)
                      -..+|..+-  +++++|+|+++.+..++. ....+++|+.|+| +..+..  --...+.++++|+.|+|++| ...+ +.
T Consensus        43 l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~~L~~L~Ls~N-~l~~-l~  116 (635)
T 4g8a_A           43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGN-PIQS-LA  116 (635)
T ss_dssp             CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTC-CCCE-EC
T ss_pred             cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC--cChhHhcCCCCCCEEEccCC-cCCC-CC
Confidence            445665432  469999999998877653 4568999999999 876542  11234788999999999999 6433 21


Q ss_pred             eEE-EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc----eeeecCCCceeEEEEEE
Q 038991          185 NFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS----YEVHDLQFLQTVNLAIL  252 (287)
Q Consensus       185 ~l~-i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~----~~~~~~p~L~~~~l~~~  252 (287)
                      .-. -..++|+.|.+.++  ..    .+......-..++|++|+++++....    ..++.+++|+++++..+
T Consensus       117 ~~~f~~L~~L~~L~Ls~N--~l----~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          117 LGAFSGLSSLQKLVAVET--NL----ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             GGGGTTCTTCCEEECTTS--CC----CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             HHHhcCCCCCCEEECCCC--cC----CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence            111 13578999999888  32    22111122246899999999886542    34577899999988644

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.66  E-value=1.8e-05  Score=69.05  Aligned_cols=179  Identities=12%  Similarity=0.077  Sum_probs=95.0

Q ss_pred             CCceEEEEEEecCccccCCCCC-cCCCcccEEEeceeeccc-cCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCcc
Q 038991           93 RDVRELELNIENQQRLELPESI-YSCRSLEVLKLDYDFDIA-VPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSI  168 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~-~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~L  168 (287)
                      +++++|+|+.+.  ...+|... ..+++|++|+|+++.... ++. ...++++|+.+.. +..-.. ......+..+++|
T Consensus        30 ~~l~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~~f~~l~~L  106 (350)
T 4ay9_X           30 RNAIELRFVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNL  106 (350)
T ss_dssp             TTCSEEEEESCC--CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECTTSBCCCTTC
T ss_pred             CCCCEEEccCCc--CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCchhhhhcccc
Confidence            578888887654  34666544 456889999998886543 332 2346777776555 542111 1112346778899


Q ss_pred             ceEEeeeeeccCCCeeeE-EEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccceee--ecCCCce
Q 038991          169 EELCLKVYLKYDGPATNF-IISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYEV--HDLQFLQ  245 (287)
Q Consensus       169 e~L~l~~c~~~~~~~~~l-~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~--~~~p~L~  245 (287)
                      +.|.+.++ .... .... ......+..|.+.++. ... ....  ..+.-....++.|++.++....+.-  ...++|+
T Consensus       107 ~~L~l~~n-~l~~-~~~~~~~~~~~l~~l~l~~~~-~i~-~l~~--~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~  180 (350)
T 4ay9_X          107 QYLLISNT-GIKH-LPDVHKIHSLQKVLLDIQDNI-NIH-TIER--NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLD  180 (350)
T ss_dssp             CEEEEEEE-CCSS-CCCCTTCCBSSCEEEEEESCT-TCC-EECT--TSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEE
T ss_pred             cccccccc-cccc-CCchhhcccchhhhhhhcccc-ccc-cccc--cchhhcchhhhhhccccccccCCChhhccccchh
Confidence            99999988 6544 2221 1234455666665541 000 0000  0000012467778877776542221  1233444


Q ss_pred             eEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991          246 TVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       246 ~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      ++.+..+..... ..    ...++++++++.|+++.|.|+
T Consensus       181 ~l~l~~~n~l~~-i~----~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          181 ELNLSDNNNLEE-LP----NDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             EEECTTCTTCCC-CC----TTTTTTEECCSEEECTTSCCC
T ss_pred             HHhhccCCcccC-CC----HHHhccCcccchhhcCCCCcC
Confidence            444321111001 11    245678888888888887664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.60  E-value=5.1e-06  Score=65.14  Aligned_cols=130  Identities=14%  Similarity=0.093  Sum_probs=79.4

Q ss_pred             CCceEEEEEEecCccccCCCCCcCC-CcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991           93 RDVRELELNIENQQRLELPESIYSC-RSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE  170 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~  170 (287)
                      .++++|++..+..  ..+|. +..+ ++|++|+|+++.+..++ ....+++|+.|+| +..+..  .-..++..+|+|+.
T Consensus        19 ~~L~~L~l~~n~l--~~i~~-~~~~~~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           19 VRDRELDLRGYKI--PVIEN-LGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICR--IGEGLDQALPDLTE   92 (176)
T ss_dssp             TSCEEEECTTSCC--CSCCC-GGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCE--ECSCHHHHCTTCCE
T ss_pred             CCceEEEeeCCCC--chhHH-hhhcCCCCCEEECCCCCCCccc-ccccCCCCCEEECCCCcccc--cCcchhhcCCCCCE
Confidence            3677777755443  23443 3344 48888888888776654 5667888888888 766543  11234567888888


Q ss_pred             EEeeeeeccCCCeeeE--EEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccc
Q 038991          171 LCLKVYLKYDGPATNF--IISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLM  233 (287)
Q Consensus       171 L~l~~c~~~~~~~~~l--~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~  233 (287)
                      |+++++ ...+ ...+  --..++|+.|.+.++  ... ........+.-..|+|+.|++.++..
T Consensus        93 L~L~~N-~i~~-~~~~~~l~~l~~L~~L~l~~N--~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           93 LILTNN-SLVE-LGDLDPLASLKSLTYLCILRN--PVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EECCSC-CCCC-GGGGGGGGGCTTCCEEECCSS--GGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EECCCC-cCCc-chhhHhhhcCCCCCEEEecCC--CCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            888888 6544 3321  114578888888887  321 00110000233568888888877754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.54  E-value=5.6e-06  Score=72.70  Aligned_cols=160  Identities=16%  Similarity=0.134  Sum_probs=84.6

Q ss_pred             cccCCCCCcCCCcccEEEeceeeccccCCCc-c-cCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCe
Q 038991          107 RLELPESIYSCRSLEVLKLDYDFDIAVPVSG-M-CFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPA  183 (287)
Q Consensus       107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~-~-~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~  183 (287)
                      ...+|..+.  ..++.|+|+++.+..++... . .+++|+.|+| +..+..  .....+.++++|+.|+|+++ .... +
T Consensus        30 l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~--i~~~~~~~l~~L~~L~Ls~N-~l~~-~  103 (361)
T 2xot_A           30 LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF--ISSEAFVPVPNLRYLDLSSN-HLHT-L  103 (361)
T ss_dssp             CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSS-CCCE-E
T ss_pred             cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc--cChhhccCCCCCCEEECCCC-cCCc-C
Confidence            344554432  34778888887766554332 2 6788888888 665542  11123567788888888887 5432 1


Q ss_pred             eeEEE-ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---ee---ecCCCceeEEEEEEEccc
Q 038991          184 TNFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---EV---HDLQFLQTVNLAILFLQW  256 (287)
Q Consensus       184 ~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~---~~~p~L~~~~l~~~~~~~  256 (287)
                      ..-.+ ..++|+.|.++++  ...    +......-..++|+.|+++++....+   .+   ..+++|+.+++..+... 
T Consensus       104 ~~~~~~~l~~L~~L~L~~N--~i~----~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-  176 (361)
T 2xot_A          104 DEFLFSDLQALEVLLLYNN--HIV----VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-  176 (361)
T ss_dssp             CTTTTTTCTTCCEEECCSS--CCC----EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred             CHHHhCCCcCCCEEECCCC--ccc----EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence            11011 2467777777776  221    10001111347788888877765422   12   45777777776533211 


Q ss_pred             cccChhhHHHHHhcCCc--ceEEEEecCee
Q 038991          257 SVLNPWEVVQLLNGILN--CKSLTLSSGVI  284 (287)
Q Consensus       257 ~~~~~~~~~~~l~~l~~--v~~L~l~~~~i  284 (287)
                       ..    ....+..+++  ++.|.++.|.+
T Consensus       177 -~l----~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          177 -KL----PLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             -CC----CHHHHHHSCHHHHTTEECCSSCE
T ss_pred             -cc----CHHHhhhccHhhcceEEecCCCc
Confidence             00    1233444544  35566666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.51  E-value=5.8e-06  Score=65.89  Aligned_cols=89  Identities=20%  Similarity=0.122  Sum_probs=55.4

Q ss_pred             cccCCCCCcCCCcccEEEeceeeccccCCC--cccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCe
Q 038991          107 RLELPESIYSCRSLEVLKLDYDFDIAVPVS--GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPA  183 (287)
Q Consensus       107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~  183 (287)
                      ...+|..+..  +|++|.|+++.+..++..  ...+++|+.|+| +..+.+  .....+.++++|+.|+|+++ ...+ .
T Consensus        20 l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N-~l~~-~   93 (192)
T 1w8a_A           20 LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG--IEPNAFEGASHIQELQLGEN-KIKE-I   93 (192)
T ss_dssp             CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSC-CCCE-E
T ss_pred             cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC--cCHhHcCCcccCCEEECCCC-cCCc-c
Confidence            3455654433  788888888877665532  557888888888 766643  11234667888888888888 5433 2


Q ss_pred             eeEEE-ECCCcceEEEEEe
Q 038991          184 TNFII-SSSTLKRFYWTVL  201 (287)
Q Consensus       184 ~~l~i-~~~~Lk~L~l~~~  201 (287)
                      ..-.+ ..++|+.|.++++
T Consensus        94 ~~~~~~~l~~L~~L~L~~N  112 (192)
T 1w8a_A           94 SNKMFLGLHQLKTLNLYDN  112 (192)
T ss_dssp             CSSSSTTCTTCCEEECCSS
T ss_pred             CHHHhcCCCCCCEEECCCC
Confidence            11111 2356666666665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.50  E-value=2e-07  Score=82.49  Aligned_cols=156  Identities=12%  Similarity=0.027  Sum_probs=87.1

Q ss_pred             HHcCCceEEEEEEecCc---cccCCCCCc-CCCcccEEEeceeeccc--cCCCcccCCCccEEEE-EEEeCCcch---HH
Q 038991           90 AVMRDVRELELNIENQQ---RLELPESIY-SCRSLEVLKLDYDFDIA--VPVSGMCFPNLKFLRV-SLQYPENQL---TE  159 (287)
Q Consensus        90 a~~~~l~~L~l~~~~~~---~~~l~~~~~-~~~~L~~L~L~~~~~~~--~~~~~~~~~~L~~L~L-~~~~~~~~~---l~  159 (287)
                      .+.+.+++|+++.+...   ...+...+. .+.+|++|+|++|.+.+  .......+++|+.|+| ++.+.+ .+   +.
T Consensus        69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~-~~~~~L~  147 (372)
T 3un9_A           69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP-EACKDLR  147 (372)
T ss_dssp             HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH-HHHHHHH
T ss_pred             HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH-HHHHHHH
Confidence            44468898888665543   112222222 23689999999887643  1112235678999999 877754 33   33


Q ss_pred             HHH-ccCCccceEEeeeeeccCCC-eeeEE---EECCCcceEEEEEeeccccccccCC--cccEEEEcCccEEEEEEecc
Q 038991          160 KLF-SSCPSIEELCLKVYLKYDGP-ATNFI---ISSSTLKRFYWTVLVDDYNFAFNNF--HHNCLIMAPLLQLLHVVDDL  232 (287)
Q Consensus       160 ~l~-~~cp~Le~L~l~~c~~~~~~-~~~l~---i~~~~Lk~L~l~~~~~~~~~~~~~~--~~~~~i~ap~L~~L~l~~~~  232 (287)
                      ..+ ..++.|+.|+|++| ...+. ...+.   -..++|+.|++++|  ...  ..|.  .....-..++|++|+++++.
T Consensus       148 ~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N--~l~--~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT--GLG--DEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             HHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS--SCH--HHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             HHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC--CCC--cHHHHHHHHHHhcCCCcCeEECCCCC
Confidence            333 46888999999999 54320 11111   13567888888877  321  0000  00011123577888877775


Q ss_pred             ccc-------eeeecCCCceeEEEEE
Q 038991          233 MVS-------YEVHDLQFLQTVNLAI  251 (287)
Q Consensus       233 ~~~-------~~~~~~p~L~~~~l~~  251 (287)
                      ...       ..+...++|+.++++.
T Consensus       223 i~~~g~~~l~~~L~~~~~L~~L~Ls~  248 (372)
T 3un9_A          223 AGDTAALALARAAREHPSLELLHLYF  248 (372)
T ss_dssp             CCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEeccC
Confidence            431       1123456777776653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.47  E-value=5.9e-06  Score=65.98  Aligned_cols=89  Identities=18%  Similarity=0.162  Sum_probs=51.6

Q ss_pred             cccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeee
Q 038991          107 RLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATN  185 (287)
Q Consensus       107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~  185 (287)
                      ...+|..+.  ++|++|.|+++.+..+|.....+++|+.|+| +..+..  .....+.++++|+.|+|+++ ...+ +..
T Consensus        22 l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N-~l~~-i~~   95 (193)
T 2wfh_A           22 LKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST--LSNQSFSNMTQLLTLILSYN-RLRC-IPP   95 (193)
T ss_dssp             CSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCB-CCT
T ss_pred             CCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCE--eCHhHccCCCCCCEEECCCC-ccCE-eCH
Confidence            344554432  4688888887776666545556777888877 665543  11223566777888888777 4433 111


Q ss_pred             EEE-ECCCcceEEEEEe
Q 038991          186 FII-SSSTLKRFYWTVL  201 (287)
Q Consensus       186 l~i-~~~~Lk~L~l~~~  201 (287)
                      -.+ ..++|+.|.+.++
T Consensus        96 ~~f~~l~~L~~L~L~~N  112 (193)
T 2wfh_A           96 RTFDGLKSLRLLSLHGN  112 (193)
T ss_dssp             TTTTTCTTCCEEECCSS
T ss_pred             HHhCCCCCCCEEECCCC
Confidence            011 2356666666655

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.44  E-value=9.6e-06  Score=63.52  Aligned_cols=80  Identities=19%  Similarity=0.132  Sum_probs=45.7

Q ss_pred             CcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEE-EECCCcc
Q 038991          118 RSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFI-ISSSTLK  194 (287)
Q Consensus       118 ~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~-i~~~~Lk  194 (287)
                      ++|++|+++++.+..++.. ...+++|+.|+| +..+..  .....+..+++|+.|++.++ ...+ ...-. -..++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N-~l~~-~~~~~~~~l~~L~  103 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS--LPDGVFDKLTKLTILYLHEN-KLQS-LPNGVFDKLTQLK  103 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE--eChhHccCCCccCEEECCCC-Cccc-cCHHHhhCCcccC
Confidence            5688888887766554422 346777888877 665543  11223566777888887777 5433 11110 1234555


Q ss_pred             eEEEEEe
Q 038991          195 RFYWTVL  201 (287)
Q Consensus       195 ~L~l~~~  201 (287)
                      .|.+.++
T Consensus       104 ~L~l~~N  110 (177)
T 2o6r_A          104 ELALDTN  110 (177)
T ss_dssp             EEECCSS
T ss_pred             EEECcCC
Confidence            5555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.44  E-value=7.2e-06  Score=76.49  Aligned_cols=76  Identities=21%  Similarity=0.171  Sum_probs=38.4

Q ss_pred             CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEE
Q 038991           94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELC  172 (287)
Q Consensus        94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~  172 (287)
                      .++.|+++.+.  ...+|. +..+++|+.|+|+++.+..+|.....+++|+.|+| +..+.+   +. -+..+++|+.|+
T Consensus       442 ~L~~L~Ls~n~--l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~---lp-~l~~l~~L~~L~  514 (567)
T 1dce_A          442 DVRVLHLAHKD--LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN---VD-GVANLPRLQELL  514 (567)
T ss_dssp             TCSEEECTTSC--CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC---CG-GGTTCSSCCEEE
T ss_pred             CceEEEecCCC--CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC---Cc-ccCCCCCCcEEE
Confidence            45555554332  223443 44555666666666555555434445556666665 444432   11 244555555555


Q ss_pred             eeee
Q 038991          173 LKVY  176 (287)
Q Consensus       173 l~~c  176 (287)
                      |+++
T Consensus       515 Ls~N  518 (567)
T 1dce_A          515 LCNN  518 (567)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            5555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.25  E-value=1.2e-05  Score=74.96  Aligned_cols=75  Identities=9%  Similarity=-0.017  Sum_probs=44.2

Q ss_pred             cccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE-ECCCcceE
Q 038991          119 SLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII-SSSTLKRF  196 (287)
Q Consensus       119 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i-~~~~Lk~L  196 (287)
                      .|+.|+|+++.+..+| ....+++|+.|+| +..+..   +..-+.++++|+.|+|+++ ...+ ++  .+ ..++|+.|
T Consensus       442 ~L~~L~Ls~n~l~~lp-~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~Ls~N-~l~~-lp--~l~~l~~L~~L  513 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRA---LPPALAALRCLEVLQASDN-ALEN-VD--GVANLPRLQEL  513 (567)
T ss_dssp             TCSEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCC---CCGGGGGCTTCCEEECCSS-CCCC-CG--GGTTCSSCCEE
T ss_pred             CceEEEecCCCCCCCc-CccccccCcEeecCcccccc---cchhhhcCCCCCEEECCCC-CCCC-Cc--ccCCCCCCcEE
Confidence            4677777777666666 4666777777777 655542   2223566777777777777 5444 32  11 23455555


Q ss_pred             EEEEe
Q 038991          197 YWTVL  201 (287)
Q Consensus       197 ~l~~~  201 (287)
                      .++++
T Consensus       514 ~Ls~N  518 (567)
T 1dce_A          514 LLCNN  518 (567)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            55554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.06  E-value=5.6e-05  Score=59.06  Aligned_cols=103  Identities=17%  Similarity=0.241  Sum_probs=69.8

Q ss_pred             CCceEEEEEEecCccccCCCCC-cCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991           93 RDVRELELNIENQQRLELPESI-YSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE  169 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le  169 (287)
                      ..+++|++..+..  ..++... ..+++|++|+|+++.+..++.. ...+++|+.|+| +..+..  .....+..+++|+
T Consensus        28 ~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~  103 (177)
T 2o6r_A           28 SSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS--LPNGVFDKLTQLK  103 (177)
T ss_dssp             TTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCC
T ss_pred             CCCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc--cCHHHhhCCcccC
Confidence            4788888866543  3455443 5678999999999987766533 358999999999 776653  1223467789999


Q ss_pred             eEEeeeeeccCCCeeeEEE-ECCCcceEEEEEe
Q 038991          170 ELCLKVYLKYDGPATNFII-SSSTLKRFYWTVL  201 (287)
Q Consensus       170 ~L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~  201 (287)
                      .|++.++ ...+ +..-.. ..++|+.|.+.++
T Consensus       104 ~L~l~~N-~l~~-~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A          104 ELALDTN-QLKS-VPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             EEECCSS-CCSC-CCTTTTTTCTTCCEEECCSS
T ss_pred             EEECcCC-cceE-eCHHHhcCCcccCEEEecCC
Confidence            9999999 6544 221111 2356777766665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.02  E-value=2.3e-05  Score=62.39  Aligned_cols=123  Identities=15%  Similarity=0.086  Sum_probs=82.2

Q ss_pred             ccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE-ECCCcceEE
Q 038991          120 LEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII-SSSTLKRFY  197 (287)
Q Consensus       120 L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i-~~~~Lk~L~  197 (287)
                      -++++++++.+..+|.  .-.++|+.|+| +..+.. -.-...+..+++|+.|+|+++ ...+ ...-.+ ..++|+.|.
T Consensus        10 ~~~l~~s~~~l~~ip~--~~~~~l~~L~l~~n~i~~-~~~~~~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPR--DIPLHTTELLLNDNELGR-ISSDGLFGRLPHLVKLELKRN-QLTG-IEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TTEEECTTSCCSSCCS--CCCTTCSEEECCSCCCCS-BCCSCSGGGCTTCCEEECCSS-CCCC-BCTTTTTTCTTCCEEE
T ss_pred             CCEEEcCCCCcCcCcc--CCCCCCCEEECCCCcCCc-cCCccccccCCCCCEEECCCC-CCCC-cCHhHcCCcccCCEEE
Confidence            3788898887766762  22459999999 776653 111124678999999999999 6654 221111 357899999


Q ss_pred             EEEeeccccccccCCcccEEEEcCccEEEEEEeccccc---eeeecCCCceeEEEEEEE
Q 038991          198 WTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS---YEVHDLQFLQTVNLAILF  253 (287)
Q Consensus       198 l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~~~~l~~~~  253 (287)
                      ++++  ..    .+......-..++|++|+++++....   ..++.+++|+.++++.+.
T Consensus        85 Ls~N--~l----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           85 LGEN--KI----KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCSC--CC----CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CCCC--cC----CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            9988  32    11011111236899999999887652   346778899998886553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.00  E-value=4.5e-05  Score=60.75  Aligned_cols=103  Identities=17%  Similarity=0.119  Sum_probs=70.8

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE  170 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~  170 (287)
                      +++++|++..+..  ..+|..+...++|++|+|+++.+..++. ....+++|+.|+| +..+..  .....+.++++|+.
T Consensus        31 ~~l~~L~L~~n~i--~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~--i~~~~f~~l~~L~~  106 (193)
T 2wfh_A           31 RDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC--IPPRTFDGLKSLRL  106 (193)
T ss_dssp             TTCCEEECCSSCC--CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCcC--chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE--eCHHHhCCCCCCCE
Confidence            4788888866543  4666667778999999999998876543 3568899999999 766643  11234678899999


Q ss_pred             EEeeeeeccCCCeeeEEE-ECCCcceEEEEEe
Q 038991          171 LCLKVYLKYDGPATNFII-SSSTLKRFYWTVL  201 (287)
Q Consensus       171 L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~  201 (287)
                      |+|.++ .... +..-.+ ..++|+.|.+.++
T Consensus       107 L~L~~N-~l~~-~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A          107 LSLHGN-DISV-VPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             EECCSS-CCCB-CCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCC-CCCe-eChhhhhcCccccEEEeCCC
Confidence            999999 5543 211111 2356777776655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.94  E-value=1.8e-05  Score=75.98  Aligned_cols=102  Identities=13%  Similarity=0.042  Sum_probs=56.3

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      ..++.|+|+.+.  ...+|..++.+++|++|+|+++.+..+|.....+++|+.|+| +..+..   +-.-+.++++|+.|
T Consensus       224 ~~L~~L~Ls~n~--l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          224 QLWHALDLSNLQ--IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS---LPAELGSCFQLKYF  298 (727)
T ss_dssp             CCCCEEECTTSC--CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS---CCSSGGGGTTCSEE
T ss_pred             CCCcEEECCCCC--CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc---cChhhcCCCCCCEE
Confidence            355566654433  235565666666677777776666555544556677777777 555432   11124556677777


Q ss_pred             EeeeeeccCCCeeeEEEECCCcceEEEEEe
Q 038991          172 CLKVYLKYDGPATNFIISSSTLKRFYWTVL  201 (287)
Q Consensus       172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~  201 (287)
                      +|.+| .+.. +..-.-..++|+.|.++++
T Consensus       299 ~L~~N-~l~~-lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          299 YFFDN-MVTT-LPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             ECCSS-CCCC-CCSSTTSCTTCCCEECTTS
T ss_pred             ECCCC-CCCc-cChhhhcCCCccEEeCCCC
Confidence            77766 4433 2221113456666666665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.83  E-value=2.2e-05  Score=75.41  Aligned_cols=112  Identities=16%  Similarity=0.033  Sum_probs=75.6

Q ss_pred             CCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE
Q 038991          110 LPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII  188 (287)
Q Consensus       110 l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i  188 (287)
                      .+..+....+|+.|+|+++.+..++.....+++|+.|+| +..+..   +..-+..+++|+.|+|+++ .+.. +..-.-
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~Ls~N-~l~~-lp~~~~  290 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTE---LPAEIKNLSNLRVLDLSHN-RLTS-LPAELG  290 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSC---CCGGGGGGTTCCEEECTTS-CCSS-CCSSGG
T ss_pred             ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcc---cChhhhCCCCCCEEeCcCC-cCCc-cChhhc
Confidence            355566778899999999988777756668999999999 776653   2223578999999999999 6543 322112


Q ss_pred             ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccc
Q 038991          189 SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLM  233 (287)
Q Consensus       189 ~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~  233 (287)
                      ..++|+.|.++++  ...    . .....-..++|+.|+++++..
T Consensus       291 ~l~~L~~L~L~~N--~l~----~-lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          291 SCFQLKYFYFFDN--MVT----T-LPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             GGTTCSEEECCSS--CCC----C-CCSSTTSCTTCCCEECTTSCC
T ss_pred             CCCCCCEEECCCC--CCC----c-cChhhhcCCCccEEeCCCCcc
Confidence            4578999999888  321    1 111122468999999987764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.76  E-value=0.00031  Score=60.56  Aligned_cols=31  Identities=19%  Similarity=0.044  Sum_probs=19.1

Q ss_pred             CCcccEEEeceeeccccCC-CcccCCCccEEEE
Q 038991          117 CRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV  148 (287)
Q Consensus       117 ~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L  148 (287)
                      |.+|++|.|.. ....++. .+..|++|+.+.+
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l  131 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQI  131 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEB
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEc
Confidence            67788887776 3433322 3456778888777

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.71  E-value=2.1e-05  Score=62.34  Aligned_cols=95  Identities=16%  Similarity=-0.011  Sum_probs=51.8

Q ss_pred             cchhhHHHHHHc--CCceEEEEEEe-cCc---cccCCCCCcCCCcccEEEeceeecccc-----CCCcccCCCccEEEE-
Q 038991           81 GRFKGWVSLAVM--RDVRELELNIE-NQQ---RLELPESIYSCRSLEVLKLDYDFDIAV-----PVSGMCFPNLKFLRV-  148 (287)
Q Consensus        81 ~~~~~wl~~a~~--~~l~~L~l~~~-~~~---~~~l~~~~~~~~~L~~L~L~~~~~~~~-----~~~~~~~~~L~~L~L-  148 (287)
                      ..+..++..+..  +.+++|+|+.+ ..+   ...+...+..+++|++|+|++|.+.+.     .......++|+.|+| 
T Consensus        22 ~~~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~  101 (185)
T 1io0_A           22 TDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE  101 (185)
T ss_dssp             CCHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             cHHHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc
Confidence            345555655554  46777777654 332   222333344566777777777755331     101124466777777 


Q ss_pred             EEEeCCcch---HHHHHccCCccceEEe--eee
Q 038991          149 SLQYPENQL---TEKLFSSCPSIEELCL--KVY  176 (287)
Q Consensus       149 ~~~~~~~~~---l~~l~~~cp~Le~L~l--~~c  176 (287)
                      +..+.+ .+   +...+..++.|++|+|  .++
T Consensus       102 ~N~i~~-~g~~~l~~~L~~n~~L~~L~L~~~~N  133 (185)
T 1io0_A          102 SNFISG-SGILALVEALQSNTSLIELRIDNQSQ  133 (185)
T ss_dssp             SSCCCH-HHHHHHHHGGGGCSSCCEEECCCCSS
T ss_pred             CCcCCH-HHHHHHHHHHHhCCCceEEEecCCCC
Confidence            665544 22   3344556667777777  555

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.56  E-value=0.00027  Score=54.88  Aligned_cols=89  Identities=15%  Similarity=0.086  Sum_probs=49.2

Q ss_pred             cccCCCCCcCCCcccEEEeceeeccccC-CCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCee
Q 038991          107 RLELPESIYSCRSLEVLKLDYDFDIAVP-VSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPAT  184 (287)
Q Consensus       107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~  184 (287)
                      ...+|..+.  ++|++|+|+++.+..++ .....+++|+.|+| +..+..  .....+.++++|+.|+|+++ ...+ +.
T Consensus        21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~N-~l~~-~~   94 (170)
T 3g39_A           21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV--LPAGVFDKLTQLTQLSLNDN-QLKS-IP   94 (170)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCC-CC
T ss_pred             cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc--cChhhccCCCCCCEEECCCC-ccCE-eC
Confidence            344554442  66777888777666543 23456777777777 655543  11233566777777777777 5433 21


Q ss_pred             eEEE-ECCCcceEEEEEe
Q 038991          185 NFII-SSSTLKRFYWTVL  201 (287)
Q Consensus       185 ~l~i-~~~~Lk~L~l~~~  201 (287)
                      .-.+ ..++|+.|.+.++
T Consensus        95 ~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           95 RGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             TTTTTTCTTCCEEECCSS
T ss_pred             HHHhcCCCCCCEEEeCCC
Confidence            1001 2345555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.52  E-value=0.00032  Score=54.77  Aligned_cols=89  Identities=15%  Similarity=0.080  Sum_probs=49.8

Q ss_pred             cccCCCCCcCCCcccEEEeceeeccccC-CCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCee
Q 038991          107 RLELPESIYSCRSLEVLKLDYDFDIAVP-VSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPAT  184 (287)
Q Consensus       107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~  184 (287)
                      ...+|..+.  ++|++|+|+++.+..++ .....+++|+.|+| +..+..  .-..++..+++|+.|+|+++ ...+ +.
T Consensus        24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~~N-~l~~-l~   97 (174)
T 2r9u_A           24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--IPTGVFDKLTQLTQLDLNDN-HLKS-IP   97 (174)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCC-CC
T ss_pred             CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--cChhHhCCcchhhEEECCCC-ccce-eC
Confidence            345555443  66788888777766543 23456777777777 655543  11223556777777777777 5433 21


Q ss_pred             eEEE-ECCCcceEEEEEe
Q 038991          185 NFII-SSSTLKRFYWTVL  201 (287)
Q Consensus       185 ~l~i-~~~~Lk~L~l~~~  201 (287)
                      .-.+ ..++|+.|.+.++
T Consensus        98 ~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           98 RGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             TTTTTTCTTCSEEECCSS
T ss_pred             HHHhccccCCCEEEeCCC
Confidence            1001 2345666665555

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.48  E-value=0.00099  Score=51.90  Aligned_cols=84  Identities=19%  Similarity=0.188  Sum_probs=62.5

Q ss_pred             CCceEEEEEEecCccccC-CCCCcCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991           93 RDVRELELNIENQQRLEL-PESIYSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE  169 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le  169 (287)
                      ..+++|+++.+..  ..+ |..+...++|++|+|+++.+..+|.. ...+++|+.|+| +..+..  .....+..+++|+
T Consensus        33 ~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~  108 (174)
T 2r9u_A           33 TDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS--IPRGAFDNLKSLT  108 (174)
T ss_dssp             TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCS
T ss_pred             CCCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce--eCHHHhccccCCC
Confidence            5788898876543  344 44556779999999999988777644 358999999999 766653  1123467899999


Q ss_pred             eEEeeeeeccCC
Q 038991          170 ELCLKVYLKYDG  181 (287)
Q Consensus       170 ~L~l~~c~~~~~  181 (287)
                      .|.|.++ .+..
T Consensus       109 ~L~L~~N-~~~c  119 (174)
T 2r9u_A          109 HIYLYNN-PWDC  119 (174)
T ss_dssp             EEECCSS-CBCT
T ss_pred             EEEeCCC-Cccc
Confidence            9999998 6543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.42  E-value=0.00079  Score=59.90  Aligned_cols=59  Identities=14%  Similarity=0.247  Sum_probs=38.1

Q ss_pred             CCcCCCcccEEEeceeeccccCCCcccCCCccEEEE--EEEeCCcchHHHHHccCCccceEEeee
Q 038991          113 SIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV--SLQYPENQLTEKLFSSCPSIEELCLKV  175 (287)
Q Consensus       113 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L--~~~~~~~~~l~~l~~~cp~Le~L~l~~  175 (287)
                      .+..|.+|+.+.|..+....++..+..+.+|+.+.|  ++...++    ..+.+|++|+.+.+..
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~----~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGS----QAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECT----TTTTTCTTCCCEECCT
T ss_pred             HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehh----hHhhCCCCCCEEecCC
Confidence            344578888888876655555444445677787777  3322222    3477888888888864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.41  E-value=0.0012  Score=51.16  Aligned_cols=84  Identities=19%  Similarity=0.165  Sum_probs=61.8

Q ss_pred             CCceEEEEEEecCccccC-CCCCcCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991           93 RDVRELELNIENQQRLEL-PESIYSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE  169 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le  169 (287)
                      ..++.|+++.+.  ...+ |..+...++|++|+|+++.+..++.. ...+++|+.|+| +..+..  .....+..+++|+
T Consensus        30 ~~l~~L~L~~N~--i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~  105 (170)
T 3g39_A           30 TTTQVLYLYDNQ--ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS--IPRGAFDNLKSLT  105 (170)
T ss_dssp             TTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCC
T ss_pred             CCCcEEEcCCCc--CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE--eCHHHhcCCCCCC
Confidence            578888886654  3444 44456679999999999988776644 358999999999 776653  1123467899999


Q ss_pred             eEEeeeeeccCC
Q 038991          170 ELCLKVYLKYDG  181 (287)
Q Consensus       170 ~L~l~~c~~~~~  181 (287)
                      .|+|.++ .+..
T Consensus       106 ~L~L~~N-~~~c  116 (170)
T 3g39_A          106 HIWLLNN-PWDC  116 (170)
T ss_dssp             EEECCSS-CBCT
T ss_pred             EEEeCCC-CCCC
Confidence            9999998 6543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.16  E-value=0.00068  Score=58.70  Aligned_cols=90  Identities=11%  Similarity=0.081  Sum_probs=58.3

Q ss_pred             cccCCCCCcCCCcccEEEece-eeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCe
Q 038991          107 RLELPESIYSCRSLEVLKLDY-DFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPA  183 (287)
Q Consensus       107 ~~~l~~~~~~~~~L~~L~L~~-~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~  183 (287)
                      ...+|. +....+|++|+|++ +.+..++. ....+++|+.|+| +..+..  .....+.++++|+.|+|+++ .+.+ +
T Consensus        21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N-~l~~-~   95 (347)
T 2ifg_A           21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF--VAPDAFHFTPRLSRLNLSFN-ALES-L   95 (347)
T ss_dssp             CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE--ECTTGGGSCSCCCEEECCSS-CCSC-C
T ss_pred             CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce--eCHHHhcCCcCCCEEeCCCC-ccce-e
Confidence            445777 77778888888885 76655542 3457888888888 665542  22234677888888888888 6544 2


Q ss_pred             eeEEEECCCcceEEEEEe
Q 038991          184 TNFIISSSTLKRFYWTVL  201 (287)
Q Consensus       184 ~~l~i~~~~Lk~L~l~~~  201 (287)
                      ..-.....+|+.|.+.++
T Consensus        96 ~~~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           96 SWKTVQGLSLQELVLSGN  113 (347)
T ss_dssp             CSTTTCSCCCCEEECCSS
T ss_pred             CHHHcccCCceEEEeeCC
Confidence            211112234888887766

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.94  E-value=0.00022  Score=56.31  Aligned_cols=21  Identities=5%  Similarity=-0.048  Sum_probs=12.0

Q ss_pred             HHHHHhcCCcceEEEEecCee
Q 038991          264 VVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       264 ~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      +.+.++..++++.|+++.+.|
T Consensus       143 l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          143 IANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCCCcCEEeccCCCC
Confidence            455555556666666655543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=95.83  E-value=0.0068  Score=52.53  Aligned_cols=112  Identities=14%  Similarity=0.142  Sum_probs=72.7

Q ss_pred             cccCCCCCcCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCee
Q 038991          107 RLELPESIYSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPAT  184 (287)
Q Consensus       107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~  184 (287)
                      ..++|..+  .+++++|+|+++.+..+|.. ..++++|+.|+| +..+.+ ..-...+.++++|.++.+..+ .  . +.
T Consensus        21 Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~-~i~~~~f~~L~~l~~~l~~~~-N--~-l~   93 (350)
T 4ay9_X           21 VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIEKA-N--N-LL   93 (350)
T ss_dssp             CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC-EECTTSBCSCTTCCEEEEEEE-T--T-CC
T ss_pred             CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC-ccChhHhhcchhhhhhhcccC-C--c-cc
Confidence            45677655  36799999999988777643 468999999999 765432 101124677888887666665 2  1 22


Q ss_pred             eEE----EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEec
Q 038991          185 NFI----ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDD  231 (287)
Q Consensus       185 ~l~----i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~  231 (287)
                      .+.    -..++|+.|.+.++  ..    .+..........++..+.+.+.
T Consensus        94 ~l~~~~f~~l~~L~~L~l~~n--~l----~~~~~~~~~~~~~l~~l~l~~~  138 (350)
T 4ay9_X           94 YINPEAFQNLPNLQYLLISNT--GI----KHLPDVHKIHSLQKVLLDIQDN  138 (350)
T ss_dssp             EECTTSBCCCTTCCEEEEEEE--CC----SSCCCCTTCCBSSCEEEEEESC
T ss_pred             ccCchhhhhcccccccccccc--cc----ccCCchhhcccchhhhhhhccc
Confidence            221    24589999999998  32    2211222345667888888765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.07  E-value=0.0014  Score=58.35  Aligned_cols=52  Identities=15%  Similarity=0.220  Sum_probs=26.9

Q ss_pred             CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccC-CCcccCCCccEEEE
Q 038991           94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVP-VSGMCFPNLKFLRV  148 (287)
Q Consensus        94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L  148 (287)
                      +++.+++...  ....++...|.|.+|+.+.|... ...++ ..+..|++|+.+.+
T Consensus       181 ~L~~l~l~~n--~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          181 NLKKADLSKT--KITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             TCCEEECTTS--CCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred             cCCeeecCCC--cceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence            5555555221  13445556666677777777543 21211 13345666666666

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=94.60  E-value=0.037  Score=47.31  Aligned_cols=29  Identities=7%  Similarity=-0.072  Sum_probs=15.0

Q ss_pred             cCccEEEEEEecccc---ceeeecCCCceeEE
Q 038991          220 APLLQLLHVVDDLMV---SYEVHDLQFLQTVN  248 (287)
Q Consensus       220 ap~L~~L~l~~~~~~---~~~~~~~p~L~~~~  248 (287)
                      +++|+++++.+....   ...+.++++|+.++
T Consensus       296 c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          296 CDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            456666665444332   23455566666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=94.59  E-value=0.0013  Score=57.86  Aligned_cols=107  Identities=11%  Similarity=0.088  Sum_probs=71.5

Q ss_pred             CCceEEEEEEecCcc---ccCCCCC-cCCCcccEEEeceeeccc-----cCCCcccCCCccEEEE-EEEeCCcc--hHHH
Q 038991           93 RDVRELELNIENQQR---LELPESI-YSCRSLEVLKLDYDFDIA-----VPVSGMCFPNLKFLRV-SLQYPENQ--LTEK  160 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~---~~l~~~~-~~~~~L~~L~L~~~~~~~-----~~~~~~~~~~L~~L~L-~~~~~~~~--~l~~  160 (287)
                      +.+++|+|+.+....   ..+...+ ..+++|++|+|++|.+.+     ++.....+++|+.|+| +..+.+.+  .+..
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~  205 (372)
T 3un9_A          126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA  205 (372)
T ss_dssp             HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred             HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence            378999998775431   1222122 245789999999997643     1111246899999999 87765422  2455


Q ss_pred             HHccCCccceEEeeeeeccCCCeeeEEE-----ECCCcceEEEEEe
Q 038991          161 LFSSCPSIEELCLKVYLKYDGPATNFII-----SSSTLKRFYWTVL  201 (287)
Q Consensus       161 l~~~cp~Le~L~l~~c~~~~~~~~~l~i-----~~~~Lk~L~l~~~  201 (287)
                      .+..++.|+.|+|++| ...+ .....+     ..++|+.|+++++
T Consensus       206 ~L~~~~~L~~L~Ls~N-~i~~-~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          206 QLDRNRQLQELNVAYN-GAGD-TAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             HGGGCSCCCEEECCSS-CCCH-HHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             HHhcCCCcCeEECCCC-CCCH-HHHHHHHHHHHhCCCCCEEeccCC
Confidence            6778899999999999 6543 221111     3589999999998

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=93.35  E-value=0.0098  Score=49.68  Aligned_cols=80  Identities=11%  Similarity=0.030  Sum_probs=43.7

Q ss_pred             CCceEEEEEEecCc-cccCCCCCcCCCcccEEEeceeeccccCCCcccCC--CccEEEE-EEEeCC----cch-HHHHHc
Q 038991           93 RDVRELELNIENQQ-RLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFP--NLKFLRV-SLQYPE----NQL-TEKLFS  163 (287)
Q Consensus        93 ~~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~--~L~~L~L-~~~~~~----~~~-l~~l~~  163 (287)
                      ..++.|+|+.+... ...+|..+..+++|+.|+|+++.+.+.. ....+.  +|+.|.| +-.+.+    ... ...++.
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~  248 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE  248 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence            46777777655433 2234444456677777777777665432 222333  6666666 544432    011 235667


Q ss_pred             cCCccceEEe
Q 038991          164 SCPSIEELCL  173 (287)
Q Consensus       164 ~cp~Le~L~l  173 (287)
                      .+|+|+.|+=
T Consensus       249 ~~P~L~~LDg  258 (267)
T 3rw6_A          249 RFPKLLRLDG  258 (267)
T ss_dssp             HCTTCCEESS
T ss_pred             HCcccCeECC
Confidence            7777776653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=92.74  E-value=0.031  Score=48.09  Aligned_cols=79  Identities=18%  Similarity=0.087  Sum_probs=50.2

Q ss_pred             CCceEEEEEE-ecCccccCC-CCCcCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCcc
Q 038991           93 RDVRELELNI-ENQQRLELP-ESIYSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSI  168 (287)
Q Consensus        93 ~~l~~L~l~~-~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~L  168 (287)
                      .++++|+|+. +.  ...++ ..+...++|+.|+|+++.+..++. ....+++|+.|+| +-.+..  .-..++...+ |
T Consensus        31 ~~L~~L~l~~~n~--l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~~~-L  105 (347)
T 2ifg_A           31 ENLTELYIENQQH--LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES--LSWKTVQGLS-L  105 (347)
T ss_dssp             SCCSEEECCSCSS--CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC--CCSTTTCSCC-C
T ss_pred             CCeeEEEccCCCC--CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce--eCHHHcccCC-c
Confidence            3688888863 33  23444 345567888888888887766543 3467888888888 665543  1112233334 8


Q ss_pred             ceEEeeee
Q 038991          169 EELCLKVY  176 (287)
Q Consensus       169 e~L~l~~c  176 (287)
                      +.|.|.++
T Consensus       106 ~~l~l~~N  113 (347)
T 2ifg_A          106 QELVLSGN  113 (347)
T ss_dssp             CEEECCSS
T ss_pred             eEEEeeCC
Confidence            88888776

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=92.34  E-value=0.095  Score=46.00  Aligned_cols=58  Identities=9%  Similarity=0.084  Sum_probs=28.7

Q ss_pred             cCccEEEEEEecc--ccceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeEe
Q 038991          220 APLLQLLHVVDDL--MVSYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVILL  286 (287)
Q Consensus       220 ap~L~~L~l~~~~--~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~~  286 (287)
                      +.+|+++.+-...  .....+.++.+|+.+.+....         ....-+..+++++.+.+..+.++|
T Consensus       333 C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~---------~~~~~~~~~~~L~~i~i~~~~~~I  392 (394)
T 4gt6_A          333 CEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSR---------SQWNAISTDSGLQNLPVAPGSIDV  392 (394)
T ss_dssp             CTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH---------HHHHTCBCCCCC------------
T ss_pred             CCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCce---------eehhhhhccCCCCEEEeCCCCEEE
Confidence            5778888775432  124567889999988764221         112345677889999999888775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=86.02  E-value=0.13  Score=42.85  Aligned_cols=38  Identities=16%  Similarity=0.162  Sum_probs=18.0

Q ss_pred             cCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991          139 CFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY  176 (287)
Q Consensus       139 ~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c  176 (287)
                      .+|+|+.|+| +-.+.+-..+...+..+|+|+.|+|+++
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N  206 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN  206 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence            3455555555 4444332233334445555555555555

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=83.27  E-value=0.36  Score=42.25  Aligned_cols=120  Identities=19%  Similarity=0.167  Sum_probs=68.8

Q ss_pred             CCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEE---E
Q 038991          113 SIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFI---I  188 (287)
Q Consensus       113 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~---i  188 (287)
                      ....|..|+.+.+......-.......++.|+...+ ...+.+ .    .+.+|++|+.+.+...      +..+.   -
T Consensus       248 ~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~-~----~F~~~~~L~~i~l~~~------i~~I~~~aF  316 (394)
T 4fs7_A          248 VFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE-K----TFYGCSSLTEVKLLDS------VKFIGEEAF  316 (394)
T ss_dssp             TTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT-T----TTTTCTTCCEEEECTT------CCEECTTTT
T ss_pred             cccccccceeEEcCCCcceeeccccccccccceeccCceeecc-c----cccccccccccccccc------cceechhhh
Confidence            445678899999876532111224557888888888 665544 2    3678899998887543      11111   0


Q ss_pred             -ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccc--cceeeecCCCceeEEEE
Q 038991          189 -SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLM--VSYEVHDLQFLQTVNLA  250 (287)
Q Consensus       189 -~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~--~~~~~~~~p~L~~~~l~  250 (287)
                       .+.+|+.+++.......    .   ....-.+.+|+++.+.....  ....+.++++|+++.+.
T Consensus       317 ~~c~~L~~i~lp~~v~~I----~---~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          317 ESCTSLVSIDLPYLVEEI----G---KRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             TTCTTCCEECCCTTCCEE----C---TTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEE
T ss_pred             cCCCCCCEEEeCCcccEE----h---HHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEEC
Confidence             24567766663221000    0   01112356777777754421  13467788999988764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=81.57  E-value=0.13  Score=40.74  Aligned_cols=96  Identities=16%  Similarity=0.047  Sum_probs=48.7

Q ss_pred             cchhhHHHHHHc--CCceEEEEEEe-cCc---cccCCCCCcCCCcccEEEeceeeccccCC-----CcccCCCccEEEE-
Q 038991           81 GRFKGWVSLAVM--RDVRELELNIE-NQQ---RLELPESIYSCRSLEVLKLDYDFDIAVPV-----SGMCFPNLKFLRV-  148 (287)
Q Consensus        81 ~~~~~wl~~a~~--~~l~~L~l~~~-~~~---~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-----~~~~~~~L~~L~L-  148 (287)
                      ..++..+..+..  ..+++|+|+.. ..+   ...+-..+....+|+.|+|++|.+.+.-.     ....-..|+.|+| 
T Consensus        27 t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~  106 (197)
T 1pgv_A           27 TDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVE  106 (197)
T ss_dssp             CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred             CCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecC
Confidence            456666666655  36777777542 221   12222233345678888888776543110     0013356666666 


Q ss_pred             EEEeCCcc--hHHHHHccCCccceEEeeee
Q 038991          149 SLQYPENQ--LTEKLFSSCPSIEELCLKVY  176 (287)
Q Consensus       149 ~~~~~~~~--~l~~l~~~cp~Le~L~l~~c  176 (287)
                      +..+.+.+  .+...+..-..|++|.|.++
T Consensus       107 ~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          107 SNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             SSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            55444321  13333444555666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	287
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	0.003

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 3/84 (3%)

Query: 1  QDRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQTLLFDATLCIRQGDFTDA 60
          +D  +SL   +   I ++L  +  + +  +S  W  +     +L     L I +   +  
Sbjct: 3  RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLW--KKLLISENFVSPK 60

Query: 61 TMERFEMSKLYLHSYRVSGSGRFK 84
                  KL     ++S   R +
Sbjct: 61 GFNSLN-LKLSQKYPKLSQQDRLR 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	287
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.17
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.06
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.92
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.89
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.54
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.53
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.51
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.47
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.46
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.27
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.19
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.17
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.17
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.15
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.14
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.09
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.04
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.02
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.01
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.82
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.79
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.73
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.61
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.53
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.38
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.31
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.25
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.16
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.07
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.03
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.99
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.63
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.39
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.04
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.93
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.86
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	95.52
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.84
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.41
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	94.07
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	93.83
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	93.78
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	89.81
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	88.72
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	85.1

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6.1e-12  Score=72.88  Aligned_cols=36  Identities=25%  Similarity=0.309  Sum_probs=33.4

Q ss_pred             CCCCchHHHHHHhcCCChhhhhhhccchhhhHhhhC
Q 038991            4 NSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCT   39 (287)
Q Consensus         4 is~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~lw~   39 (287)
                      ++.||+||+.+||++||.+|+++++.|||+|+++-.
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            478999999999999999999999999999999753

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.9e-13  Score=114.92  Aligned_cols=178  Identities=19%  Similarity=0.151  Sum_probs=87.2

Q ss_pred             CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccc-cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIA-VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      .+++|+++.+......++..+..|++|++|+|++|...+ .......+++|+.|+| +|...++.++..+..+||+|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            566666654433223333344556777777777765432 1112235677777777 66544545666666677777777


Q ss_pred             EeeeeeccCCCee----eEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc----ceeeecCCC
Q 038991          172 CLKVYLKYDGPAT----NFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV----SYEVHDLQF  243 (287)
Q Consensus       172 ~l~~c~~~~~~~~----~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~----~~~~~~~p~  243 (287)
                      ++++| ..-. ..    .+.-.+++|+.|.+.+|.....  ..+ ...+.-.+|+|++|+++++...    ...+..+|+
T Consensus       127 ~ls~c-~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~i~--~~~-l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~  201 (284)
T d2astb2         127 NLSWC-FDFT-EKHVQVAVAHVSETITQLNLSGYRKNLQ--KSD-LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY  201 (284)
T ss_dssp             ECCCC-TTCC-HHHHHHHHHHSCTTCCEEECCSCGGGSC--HHH-HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccccc-cccc-cccchhhhcccccccchhhhcccccccc--ccc-ccccccccccccccccccccCCCchhhhhhcccCc
Confidence            77776 3211 11    1111245666666666511110  000 1111223566666666654321    123455666


Q ss_pred             ceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEec
Q 038991          244 LQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSS  281 (287)
Q Consensus       244 L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~  281 (287)
                      |+++++..+..-    .+..+ .-+..+++++.|+++.
T Consensus       202 L~~L~L~~C~~i----~~~~l-~~L~~~~~L~~L~l~~  234 (284)
T d2astb2         202 LQHLSLSRCYDI----IPETL-LELGEIPTLKTLQVFG  234 (284)
T ss_dssp             CCEEECTTCTTC----CGGGG-GGGGGCTTCCEEECTT
T ss_pred             CCEEECCCCCCC----ChHHH-HHHhcCCCCCEEeeeC
Confidence            666666433211    11111 1234556666666543

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.6e-10  Score=80.24  Aligned_cols=38  Identities=26%  Similarity=0.288  Sum_probs=36.1

Q ss_pred             CCCCCCCchHHHHHHhcCCChhhhhhhccchhhhHhhh
Q 038991            1 QDRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVC   38 (287)
Q Consensus         1 ~D~is~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~lw   38 (287)
                      .|.|+.||+||+.+||++||.+|+++++.|||+|+.+.
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~   53 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILA   53 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999864

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=9.7e-11  Score=82.16  Aligned_cols=40  Identities=18%  Similarity=0.250  Sum_probs=37.0

Q ss_pred             CCCCCCCchHHHHHHhcCCChhhhhhhccchhhhHhhhCC
Q 038991            1 QDRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTS   40 (287)
Q Consensus         1 ~D~is~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~lw~~   40 (287)
                      +|.|+.||+||+.+||++|+.+|+++++.|||+|+++...
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~   42 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   42 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHT
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Confidence            5889999999999999999999999999999999987544

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=6.6e-09  Score=74.81  Aligned_cols=37  Identities=32%  Similarity=0.457  Sum_probs=34.3

Q ss_pred             CCCCCCCc----hHHHHHHhcCCChhhhhhhccchhhhHhh
Q 038991            1 QDRNSSLL----DSVLCNILSFLTTKIDVATCILSSRWRHV   37 (287)
Q Consensus         1 ~D~is~LP----d~vL~~Ils~L~~~~~~~~s~vSkrW~~l   37 (287)
                      .|.|+.||    |||+.+|||||+.+|+++++.|||+|+++
T Consensus         8 ~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             ccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            47888999    59999999999999999999999999975

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=3.6e-10  Score=94.41  Aligned_cols=171  Identities=13%  Similarity=0.054  Sum_probs=95.3

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccc---cCCCcccCCCccEEEE-EEEeCCcchHHHH-HccCCc
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIA---VPVSGMCFPNLKFLRV-SLQYPENQLTEKL-FSSCPS  167 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l-~~~cp~  167 (287)
                      +++++|++..+.... ..+..+..+++|++|++++|...+   +.....+||+|+.|++ +|....++.+... ...||.
T Consensus        71 ~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~  149 (284)
T d2astb2          71 SKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  149 (284)
T ss_dssp             CCCSEEECTTCBCCH-HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCcccccccccCCCc-HHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccc
Confidence            577887776553221 112223456778888888875432   1112246788888888 7654444555443 345678


Q ss_pred             cceEEeeeeecc-CCC-eeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc----ceeeecC
Q 038991          168 IEELCLKVYLKY-DGP-ATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV----SYEVHDL  241 (287)
Q Consensus       168 Le~L~l~~c~~~-~~~-~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~----~~~~~~~  241 (287)
                      |+.|++.+|... .+. +..+.-.+|+|++|++.+|.. .    .+.........|+|++|.+++|...    ...++++
T Consensus       150 L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~-i----td~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~  224 (284)
T d2astb2         150 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM-L----KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI  224 (284)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT-C----CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred             cchhhhcccccccccccccccccccccccccccccccC-C----CchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcC
Confidence            888888877211 110 112222467888888877721 1    1101111124678888888775421    2346678


Q ss_pred             CCceeEEEEEEEccccccChhhHHHHHhcCCcce
Q 038991          242 QFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCK  275 (287)
Q Consensus       242 p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~  275 (287)
                      |+|+.+++..+      .....+..+.+++++++
T Consensus       225 ~~L~~L~l~~~------~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         225 PTLKTLQVFGI------VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             TTCCEEECTTS------SCTTCHHHHHHHSTTSE
T ss_pred             CCCCEEeeeCC------CCHHHHHHHHHhCcccc
Confidence            88888876432      12234566667777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.51  E-value=4.4e-09  Score=83.61  Aligned_cols=162  Identities=15%  Similarity=0.162  Sum_probs=113.2

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      ..+++|++..+..  ..++ .+..+++|++|+|+++.+.+++ ....+++|+.|++ +..+.+   +. -+..+|+|+.|
T Consensus        46 ~~L~~L~l~~~~i--~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~---l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          46 NSIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKD---LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HTCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC---GG-GGTTCTTCCEE
T ss_pred             cCccEEECcCCCC--CCch-hHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccc---cc-ccccccccccc
Confidence            4788888755432  2333 3567899999999999887766 5568999999999 887754   22 26789999999


Q ss_pred             EeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce-eeecCCCceeEEEE
Q 038991          172 CLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY-EVHDLQFLQTVNLA  250 (287)
Q Consensus       172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~  250 (287)
                      .+.+| .... ...+ ...+.|+.+.+.++  ..    .+  ....-..++|+.+.+.++....+ .++++++|+++++.
T Consensus       118 ~l~~~-~~~~-~~~l-~~l~~l~~l~~~~n--~l----~~--~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls  186 (210)
T d1h6ta2         118 SLEHN-GISD-INGL-VHLPQLESLYLGNN--KI----TD--ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS  186 (210)
T ss_dssp             ECTTS-CCCC-CGGG-GGCTTCCEEECCSS--CC----CC--CGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             ccccc-cccc-cccc-cccccccccccccc--cc----cc--cccccccccccccccccccccccccccCCCCCCEEECC
Confidence            99999 6544 3221 13467888877776  22    11  11112368999999998876533 47789999999986


Q ss_pred             EEEccccccChhhHHHHHhcCCcceEEEEec
Q 038991          251 ILFLQWSVLNPWEVVQLLNGILNCKSLTLSS  281 (287)
Q Consensus       251 ~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~  281 (287)
                      .+...       .+ .-+.++++++.|++++
T Consensus       187 ~N~i~-------~l-~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         187 KNHIS-------DL-RALAGLKNLDVLELFS  209 (210)
T ss_dssp             SSCCC-------BC-GGGTTCTTCSEEEEEE
T ss_pred             CCCCC-------CC-hhhcCCCCCCEEEccC
Confidence            44211       12 2478899999999986

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.47  E-value=6.2e-09  Score=82.00  Aligned_cols=158  Identities=12%  Similarity=0.118  Sum_probs=107.6

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      .++++|++..+..  ..++ .+..+++|++|+++++.+.+.+ ....+++|+.|++ +..+..-..    +.+++.|+.|
T Consensus        40 ~~l~~L~l~~~~i--~~l~-~l~~l~nL~~L~Ls~N~l~~~~-~l~~l~~L~~L~l~~n~~~~~~~----l~~l~~L~~L  111 (199)
T d2omxa2          40 DQVTTLQADRLGI--KSID-GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITP----LANLTNLTGL  111 (199)
T ss_dssp             TTCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG----GTTCTTCSEE
T ss_pred             cCCCEEECCCCCC--CCcc-ccccCCCcCcCccccccccCcc-cccCCcccccccccccccccccc----cccccccccc
Confidence            5888888765443  2333 3556899999999999877665 4678999999999 776654222    6789999999


Q ss_pred             EeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce-eeecCCCceeEEEE
Q 038991          172 CLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY-EVHDLQFLQTVNLA  250 (287)
Q Consensus       172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~  250 (287)
                      .+.+| .... ...+ ...++|+.|.++++  ..    .. . ...-..++|++|.+.++..... .++++++|+.+++.
T Consensus       112 ~l~~~-~~~~-~~~~-~~l~~L~~L~l~~n--~l----~~-~-~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls  180 (199)
T d2omxa2         112 TLFNN-QITD-IDPL-KNLTNLNRLELSSN--TI----SD-I-SALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDIS  180 (199)
T ss_dssp             ECCSS-CCCC-CGGG-TTCTTCSEEECCSS--CC----CC-C-GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             ccccc-cccc-cccc-chhhhhHHhhhhhh--hh----cc-c-ccccccccccccccccccccCCccccCCCCCCEEECC
Confidence            99998 5443 2221 13578999998887  32    11 1 1112468999999988865533 47789999999886


Q ss_pred             EEEccccccChhhHHHHHhcCCcceEE
Q 038991          251 ILFLQWSVLNPWEVVQLLNGILNCKSL  277 (287)
Q Consensus       251 ~~~~~~~~~~~~~~~~~l~~l~~v~~L  277 (287)
                      .+...    .   + ..+.++++++.|
T Consensus       181 ~N~i~----~---i-~~l~~L~~L~~L  199 (199)
T d2omxa2         181 SNKVS----D---I-SVLAKLTNLESL  199 (199)
T ss_dssp             SSCCC----C---C-GGGGGCTTCSEE
T ss_pred             CCCCC----C---C-ccccCCCCCCcC
Confidence            44211    1   1 236778888776

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.46  E-value=7.1e-09  Score=81.64  Aligned_cols=144  Identities=13%  Similarity=0.100  Sum_probs=104.4

Q ss_pred             CCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCcce
Q 038991          117 CRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKR  195 (287)
Q Consensus       117 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~  195 (287)
                      .+++++|.++++...++. ....|++|+.|++ +..+.+-..    +.++|+|+.|.+.+| .... ...+. ..++|+.
T Consensus        39 l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~----l~~l~~L~~L~l~~n-~~~~-~~~l~-~l~~L~~  110 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP----LKNLTKLVDILMNNN-QIAD-ITPLA-NLTNLTG  110 (199)
T ss_dssp             HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSS-CCCC-CGGGT-TCTTCSE
T ss_pred             hcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc----ccCCccccccccccc-cccc-ccccc-ccccccc
Confidence            467999999999877665 5678999999999 877765222    788999999999999 6544 33321 4578999


Q ss_pred             EEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce-eeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcc
Q 038991          196 FYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY-EVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNC  274 (287)
Q Consensus       196 L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v  274 (287)
                      |.+.++  ...    . . ...-..|+|+.|+++++..... .+..+++|+.+++..+..    ..   + .-+++++++
T Consensus       111 L~l~~~--~~~----~-~-~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l----~~---l-~~l~~l~~L  174 (199)
T d2omxa2         111 LTLFNN--QIT----D-I-DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQV----TD---L-KPLANLTTL  174 (199)
T ss_dssp             EECCSS--CCC----C-C-GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC----CC---C-GGGTTCTTC
T ss_pred             cccccc--ccc----c-c-cccchhhhhHHhhhhhhhhcccccccccccccccccccccc----cC---C-ccccCCCCC
Confidence            999887  321    1 0 1112468999999998876533 367889999988764321    11   1 127889999


Q ss_pred             eEEEEecCee
Q 038991          275 KSLTLSSGVI  284 (287)
Q Consensus       275 ~~L~l~~~~i  284 (287)
                      +.|+++.+.|
T Consensus       175 ~~L~ls~N~i  184 (199)
T d2omxa2         175 ERLDISSNKV  184 (199)
T ss_dssp             CEEECCSSCC
T ss_pred             CEEECCCCCC
Confidence            9999999865

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.27  E-value=3.6e-08  Score=78.97  Aligned_cols=76  Identities=12%  Similarity=0.022  Sum_probs=54.0

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      .++++|++..+..  ..++ .+..+++|++|+++++.+.... ....+++|+.+.+ +..+.+-..    +.++++|+.+
T Consensus        41 ~~L~~L~l~~~~i--~~l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~i~~----l~~l~~L~~l  112 (227)
T d1h6ua2          41 DGITTLSAFGTGV--TTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNVSA----IAGLQSIKTL  112 (227)
T ss_dssp             HTCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCCGG----GTTCTTCCEE
T ss_pred             CCcCEEECCCCCC--Ccch-hHhcCCCCcEeecCCceeeccc-ccccccccccccccccccccccc----cccccccccc
Confidence            5788888765542  3443 3567888999999988776554 4568888888888 766544222    5678888888


Q ss_pred             Eeeee
Q 038991          172 CLKVY  176 (287)
Q Consensus       172 ~l~~c  176 (287)
                      .+.+|
T Consensus       113 ~l~~~  117 (227)
T d1h6ua2         113 DLTST  117 (227)
T ss_dssp             ECTTS
T ss_pred             ccccc
Confidence            88888

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.19  E-value=8.7e-08  Score=80.42  Aligned_cols=81  Identities=16%  Similarity=0.169  Sum_probs=46.2

Q ss_pred             CceEEEEEEecCc-cccCCCCCcCCCcccEEEecee-ecc-ccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991           94 DVRELELNIENQQ-RLELPESIYSCRSLEVLKLDYD-FDI-AVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE  169 (287)
Q Consensus        94 ~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~-~~~-~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le  169 (287)
                      .|.+|+|...... ...+|..+...++|++|+|+++ .+. .+|.....+++|+.|+| +..+.+  .....+..++.|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~--~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG--AIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--ECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccc--cccccccchhhhc
Confidence            4667777654433 3457777777777888877764 333 35545667777777777 665432  1112233444444


Q ss_pred             eEEeeee
Q 038991          170 ELCLKVY  176 (287)
Q Consensus       170 ~L~l~~c  176 (287)
                      .+.+..+
T Consensus       129 ~l~l~~N  135 (313)
T d1ogqa_         129 TLDFSYN  135 (313)
T ss_dssp             EEECCSS
T ss_pred             ccccccc
Confidence            4444443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=2.4e-08  Score=82.10  Aligned_cols=171  Identities=16%  Similarity=0.095  Sum_probs=88.5

Q ss_pred             CCceEEEEEEecCccccCCCC-CcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991           93 RDVRELELNIENQQRLELPES-IYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE  170 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~  170 (287)
                      +++++|+|+.+.  ...+|.. +...++|++|+|+++.+..++ ....+++|+.|+| +..+...   ...+.+.|+|+.
T Consensus        31 ~~l~~L~Ls~N~--i~~l~~~~f~~l~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~Ls~N~l~~~---~~~~~~l~~L~~  104 (266)
T d1p9ag_          31 KDTTILHLSENL--LYTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQSL---PLLGQTLPALTV  104 (266)
T ss_dssp             TTCCEEECTTSC--CSEEEGGGGTTCTTCCEEECTTSCCCEEE-CCSCCTTCCEEECCSSCCSSC---CCCTTTCTTCCE
T ss_pred             cCCCEEECcCCc--CCCcCHHHhhccccccccccccccccccc-ccccccccccccccccccccc---cccccccccccc
Confidence            456666654433  2233322 334566777777666555544 3346666777766 5544331   123455666777


Q ss_pred             EEeeeeeccCCCeeeEE-EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---eeecCCCcee
Q 038991          171 LCLKVYLKYDGPATNFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---EVHDLQFLQT  246 (287)
Q Consensus       171 L~l~~c~~~~~~~~~l~-i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~  246 (287)
                      |+++++ .... ..... -..++++.|.+.++  ..    ...........++|+.++++++....+   .++.+++|++
T Consensus       105 L~l~~~-~~~~-~~~~~~~~l~~l~~L~l~~n--~l----~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~  176 (266)
T d1p9ag_         105 LDVSFN-RLTS-LPLGALRGLGELQELYLKGN--EL----KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT  176 (266)
T ss_dssp             EECCSS-CCCC-CCSSTTTTCTTCCEEECTTS--CC----CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred             cccccc-ccce-eecccccccccccccccccc--cc----ceeccccccccccchhcccccccccccCccccccccccce
Confidence            776666 4322 11111 12345566665554  21    111112222457788888877765422   3566778888


Q ss_pred             EEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991          247 VNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI  284 (287)
Q Consensus       247 ~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i  284 (287)
                      ++++.+... ...      .-+..+++++.|.++.|..
T Consensus       177 L~Ls~N~L~-~lp------~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         177 LLLQENSLY-TIP------KGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             EECCSSCCC-CCC------TTTTTTCCCSEEECCSCCB
T ss_pred             eecccCCCc-ccC------hhHCCCCCCCEEEecCCCC
Confidence            877643221 111      1122467788888877643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.2e-08  Score=77.62  Aligned_cols=29  Identities=10%  Similarity=0.236  Sum_probs=17.7

Q ss_pred             cCccEEEEEEecccc------ceeeecCCCceeEE
Q 038991          220 APLLQLLHVVDDLMV------SYEVHDLQFLQTVN  248 (287)
Q Consensus       220 ap~L~~L~l~~~~~~------~~~~~~~p~L~~~~  248 (287)
                      .|+|++|++.++...      ...+..+|+|+.++
T Consensus       111 l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         111 LKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            467777777766543      12356677777655

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.15  E-value=2e-07  Score=73.65  Aligned_cols=139  Identities=19%  Similarity=0.120  Sum_probs=100.4

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      .++++|+++.+..  ..++. +..+++|+.|+++++.+..++ ....+++|+.|++ ++.+..-.    -+.+++.|+.+
T Consensus        68 ~~L~~L~L~~n~i--~~l~~-~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~~~~~~----~l~~l~~l~~l  139 (210)
T d1h6ta2          68 PNVTKLFLNGNKL--TDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISDIN----GLVHLPQLESL  139 (210)
T ss_dssp             TTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCCCG----GGGGCTTCCEE
T ss_pred             CCCCEEeCCCccc--cCccc-cccCccccccccccccccccc-cccccccccccccccccccccc----ccccccccccc
Confidence            5899999977653  33443 456789999999999877766 6678999999999 87665422    26789999999


Q ss_pred             EeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce-eeecCCCceeEEEE
Q 038991          172 CLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY-EVHDLQFLQTVNLA  250 (287)
Q Consensus       172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~  250 (287)
                      .+.++ ...+ ... .-..++|+.+.+.++  ..    .+ ... .-..|+|++|+++++....+ .+.++++|+.++|.
T Consensus       140 ~~~~n-~l~~-~~~-~~~l~~L~~l~l~~n--~l----~~-i~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         140 YLGNN-KITD-ITV-LSRLTKLDTLSLEDN--QI----SD-IVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             ECCSS-CCCC-CGG-GGGCTTCSEEECCSS--CC----CC-CGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEE
T ss_pred             ccccc-cccc-ccc-ccccccccccccccc--cc----cc-ccc-ccCCCCCCEEECCCCCCCCChhhcCCCCCCEEEcc
Confidence            99998 6544 221 113578999888887  32    22 111 12469999999999876543 47889999999985

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.14  E-value=7.2e-09  Score=81.66  Aligned_cols=124  Identities=15%  Similarity=0.124  Sum_probs=75.0

Q ss_pred             ceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEe
Q 038991           95 VRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCL  173 (287)
Q Consensus        95 l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l  173 (287)
                      .+++++.........++..+...++|++|+|+++.+..++ ....+++|+.|+| +..+.+   +..+...+|.|+.|++
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~---i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK---IENLDAVADTLEELWI  100 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECS---CSSHHHHHHHCCEEEC
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccc---cccccccccccccccc
Confidence            4455554332223334445566788999999988877776 5668889999999 887764   2233445678899999


Q ss_pred             eeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccE--EEEcCccEEEEEEecc
Q 038991          174 KVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNC--LIMAPLLQLLHVVDDL  232 (287)
Q Consensus       174 ~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~--~i~ap~L~~L~l~~~~  232 (287)
                      .++ ...+ +..+ ...++|+.|.++++  ..    .. ...+  .-..|+|+.|++.|+.
T Consensus       101 ~~N-~i~~-l~~~-~~l~~L~~L~L~~N--~i----~~-~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         101 SYN-QIAS-LSGI-EKLVNLRVLYMSNN--KI----TN-WGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             SEE-ECCC-HHHH-HHHHHSSEEEESEE--EC----CC-HHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccc-cccc-cccc-cccccccccccccc--hh----cc-ccccccccCCCccceeecCCCc
Confidence            888 6544 3221 13467777777776  22    11 1111  1134666666666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1e-08  Score=84.36  Aligned_cols=147  Identities=16%  Similarity=0.149  Sum_probs=75.7

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      +++++|+|+.+..  ..+|.. ...++|++|+|+++.+...+.....+++|+.|++ +..+..  .....+...++|+.|
T Consensus        55 ~~L~~L~L~~N~l--~~l~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~l~~L  129 (266)
T d1p9ag_          55 TRLTQLNLDRAEL--TKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS--LPLGALRGLGELQEL  129 (266)
T ss_dssp             TTCCEEECTTSCC--CEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCC--CCSSTTTTCTTCCEE
T ss_pred             ccccccccccccc--cccccc-cccccccccccccccccccccccccccccccccccccccce--eeccccccccccccc
Confidence            4666676654432  233322 3456677777777666554445556677777777 554432  111234556677777


Q ss_pred             EeeeeeccCCCeee-EEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce--eeecCCCceeEE
Q 038991          172 CLKVYLKYDGPATN-FIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY--EVHDLQFLQTVN  248 (287)
Q Consensus       172 ~l~~c~~~~~~~~~-l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~--~~~~~p~L~~~~  248 (287)
                      .+.++ .... +.. .....+.|+.|.++++  ..    .+......-..++|++|+++++....+  .+.++++|+.++
T Consensus       130 ~l~~n-~l~~-l~~~~~~~l~~l~~l~l~~N--~l----~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~  201 (266)
T d1p9ag_         130 YLKGN-ELKT-LPPGLLTPTPKLEKLSLANN--NL----TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF  201 (266)
T ss_dssp             ECTTS-CCCC-CCTTTTTTCTTCCEEECTTS--CC----SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEE
T ss_pred             ccccc-ccce-eccccccccccchhcccccc--cc----cccCccccccccccceeecccCCCcccChhHCCCCCCCEEE
Confidence            77766 4332 211 1112356666666665  21    110111111346777777776654422  234566677666


Q ss_pred             EEEE
Q 038991          249 LAIL  252 (287)
Q Consensus       249 l~~~  252 (287)
                      ++..
T Consensus       202 L~~N  205 (266)
T d1p9ag_         202 LHGN  205 (266)
T ss_dssp             CCSC
T ss_pred             ecCC
Confidence            6544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.04  E-value=3.9e-07  Score=78.00  Aligned_cols=143  Identities=14%  Similarity=0.110  Sum_probs=81.0

Q ss_pred             CCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeee---------E
Q 038991          117 CRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATN---------F  186 (287)
Q Consensus       117 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~---------l  186 (287)
                      +++|++|+++++.+.+++ ....+++|+.|++ +..+.+-..    +..+|+|+.|.+.++ ...+ ...         +
T Consensus       218 ~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~~-~l~~-~~~~~~~~~l~~l  290 (384)
T d2omza2         218 LTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGAN-QISN-ISPLAGLTALTNL  290 (384)
T ss_dssp             CTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSS-CCCC-CGGGTTCTTCSEE
T ss_pred             cCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc----ccccccCCEeeccCc-ccCC-CCccccccccccc
Confidence            455666666666554443 4445666666666 554443111    455666666666555 3222 110         0


Q ss_pred             ------------EEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce-eeecCCCceeEEEEEEE
Q 038991          187 ------------IISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY-EVHDLQFLQTVNLAILF  253 (287)
Q Consensus       187 ------------~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~~~~  253 (287)
                                  ....++++.|+++++  ..    .+ ... .-..|+|++|+++++....+ .++++|+|+.++++.+.
T Consensus       291 ~~~~n~l~~~~~~~~~~~l~~L~ls~n--~l----~~-l~~-l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         291 ELNENQLEDISPISNLKNLTYLTLYFN--NI----SD-ISP-VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             ECCSSCCSCCGGGGGCTTCSEEECCSS--CC----SC-CGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             cccccccccccccchhcccCeEECCCC--CC----CC-Ccc-cccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCc
Confidence                        112356677766665  21    22 111 12468899999988865533 47788899988886442


Q ss_pred             ccccccChhhHHHHHhcCCcceEEEEecC
Q 038991          254 LQWSVLNPWEVVQLLNGILNCKSLTLSSG  282 (287)
Q Consensus       254 ~~~~~~~~~~~~~~l~~l~~v~~L~l~~~  282 (287)
                      .. +      +.. ++++++++.|+++.|
T Consensus       363 l~-~------l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         363 IS-D------LTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CC-B------CGG-GTTCTTCSEEECCCE
T ss_pred             CC-C------Chh-hccCCCCCEeeCCCC
Confidence            11 1      111 678889999998865

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.02  E-value=1.9e-07  Score=74.62  Aligned_cols=154  Identities=14%  Similarity=0.037  Sum_probs=103.7

Q ss_pred             CCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCcc
Q 038991          116 SCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLK  194 (287)
Q Consensus       116 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk  194 (287)
                      .+.+|+.|.+.+|...+++ ....+++|+.|++ +..+.+-..    +..+++|+.|.+.+| ...+ +..+. ..++|+
T Consensus        39 ~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~----l~~l~~l~~l~~~~n-~~~~-i~~l~-~l~~L~  110 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGN-PLKN-VSAIA-GLQSIK  110 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSC-CCSC-CGGGT-TCTTCC
T ss_pred             HcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc----ccccccccccccccc-cccc-ccccc-cccccc
Confidence            3578999999999877775 6779999999999 877765222    788999999999999 6554 43322 456788


Q ss_pred             eEEEEEeeccc--cc---------cccC---CcccEEEEcCccEEEEEEecccc-ceeeecCCCceeEEEEEEEcccccc
Q 038991          195 RFYWTVLVDDY--NF---------AFNN---FHHNCLIMAPLLQLLHVVDDLMV-SYEVHDLQFLQTVNLAILFLQWSVL  259 (287)
Q Consensus       195 ~L~l~~~~~~~--~~---------~~~~---~~~~~~i~ap~L~~L~l~~~~~~-~~~~~~~p~L~~~~l~~~~~~~~~~  259 (287)
                      .+.+.++....  .+         ...+   ........+++|++|.+.++... ...++++++|+++++..+...    
T Consensus       111 ~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~----  186 (227)
T d1h6ua2         111 TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS----  186 (227)
T ss_dssp             EEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC----
T ss_pred             ccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccC----
Confidence            88777662110  00         0000   00011235678999998887654 345778899999988543211    


Q ss_pred             ChhhHHHHHhcCCcceEEEEecCeeE
Q 038991          260 NPWEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       260 ~~~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      .   + ..+.++++++.|.++.+.|.
T Consensus       187 ~---l-~~l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         187 D---I-SPLASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             C---C-GGGGGCTTCCEEECTTSCCC
T ss_pred             C---C-hhhcCCCCCCEEECcCCcCC
Confidence            1   1 23788999999999988653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=9.6e-08  Score=72.51  Aligned_cols=14  Identities=14%  Similarity=0.133  Sum_probs=7.6

Q ss_pred             eecCCCceeEEEEE
Q 038991          238 VHDLQFLQTVNLAI  251 (287)
Q Consensus       238 ~~~~p~L~~~~l~~  251 (287)
                      +..+|+|+.+++..
T Consensus       108 l~~l~~L~~L~l~~  121 (162)
T d1a9na_         108 LASLKSLTYLCILR  121 (162)
T ss_dssp             GGGCTTCCEEECCS
T ss_pred             cccccccchhhcCC
Confidence            34556666655543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.82  E-value=9.9e-07  Score=75.39  Aligned_cols=155  Identities=15%  Similarity=0.066  Sum_probs=103.8

Q ss_pred             CCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECC
Q 038991          113 SIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSS  191 (287)
Q Consensus       113 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~  191 (287)
                      ....+++++.+.++++....++ ....+++|++|++ +..+.+-.    .+..+++|+.|.+.+| ...+ ...+ -..+
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~-~~~~~~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n-~l~~-~~~~-~~~~  263 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANN-QISN-LAPL-SGLT  263 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSS-CCCC-CGGG-TTCT
T ss_pred             ccccccccceeeccCCccCCCC-cccccCCCCEEECCCCCCCCcc----hhhcccccchhccccC-ccCC-CCcc-cccc
Confidence            3455688999999998776654 4567899999999 88776522    2678999999999999 6655 3321 1346


Q ss_pred             CcceEEEEEeecccc-c-cccC------------C--cccEEEEcCccEEEEEEeccccce-eeecCCCceeEEEEEEEc
Q 038991          192 TLKRFYWTVLVDDYN-F-AFNN------------F--HHNCLIMAPLLQLLHVVDDLMVSY-EVHDLQFLQTVNLAILFL  254 (287)
Q Consensus       192 ~Lk~L~l~~~~~~~~-~-~~~~------------~--~~~~~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~~~~~  254 (287)
                      +|+.|.+.++  ... . .+.+            .  ........++++.++++++..... .+..+|+|+++++..+..
T Consensus       264 ~L~~L~l~~~--~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l  341 (384)
T d2omza2         264 KLTELKLGAN--QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKV  341 (384)
T ss_dssp             TCSEEECCSS--CCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCC
T ss_pred             cCCEeeccCc--ccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCC
Confidence            8888888766  211 0 0000            0  001122457888888888765533 478899999999864421


Q ss_pred             cccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991          255 QWSVLNPWEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       255 ~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      .    .   +. .+.++++++.|+++.|.|+
T Consensus       342 ~----~---l~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         342 S----D---VS-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             C----C---CG-GGGGCTTCCEEECCSSCCC
T ss_pred             C----C---Ch-hHcCCCCCCEEECCCCcCC
Confidence            1    1   11 3788999999999988654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.79  E-value=8.6e-07  Score=63.92  Aligned_cols=59  Identities=17%  Similarity=0.125  Sum_probs=36.0

Q ss_pred             CcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991          114 IYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY  176 (287)
Q Consensus       114 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c  176 (287)
                      +..+.+|++|+++++.+..+|.....+++|+.|++ +-.+.+-.   . +..+|+|+.|.+.++
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~---~-~~~l~~L~~L~l~~N   75 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD---G-VANLPRLQELLLCNN   75 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG---G-GTTCSSCCEEECCSS
T ss_pred             cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC---c-cccccccCeEECCCC
Confidence            45566677777777766665534456677777776 55544311   1 456666777776666

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.73  E-value=1.6e-07  Score=73.60  Aligned_cols=132  Identities=14%  Similarity=0.053  Sum_probs=89.5

Q ss_pred             CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcc
Q 038991          136 SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHH  214 (287)
Q Consensus       136 ~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~  214 (287)
                      ....+++|+.|+| +..+.+-..    +.++++|+.|++++| .... +..+.-..++|+.|.+.++  ..    .. . 
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i~~----l~~l~~L~~L~Ls~N-~i~~-i~~~~~~~~~L~~L~l~~N--~i----~~-l-  108 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKISS----LSGMENLRILSLGRN-LIKK-IENLDAVADTLEELWISYN--QI----AS-L-  108 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCCCC----HHHHTTCCEEECCEE-EECS-CSSHHHHHHHCCEEECSEE--EC----CC-H-
T ss_pred             HHhcccccceeECcccCCCCccc----ccCCccccChhhccc-cccc-ccccccccccccccccccc--cc----cc-c-
Confidence            3457999999999 988875322    567899999999999 6655 4433333468999999998  32    21 1 


Q ss_pred             cEEEEcCccEEEEEEeccccc----eeeecCCCceeEEEEEEEccccccC---h-hhHHHHHhcCCcceEEEEec
Q 038991          215 NCLIMAPLLQLLHVVDDLMVS----YEVHDLQFLQTVNLAILFLQWSVLN---P-WEVVQLLNGILNCKSLTLSS  281 (287)
Q Consensus       215 ~~~i~ap~L~~L~l~~~~~~~----~~~~~~p~L~~~~l~~~~~~~~~~~---~-~~~~~~l~~l~~v~~L~l~~  281 (287)
                      .-....++|+.|+++++....    ..+..+|+|+.+++..+........   . .--..++..+++++.|+-..
T Consensus       109 ~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~~  183 (198)
T d1m9la_         109 SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMP  183 (198)
T ss_dssp             HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSGG
T ss_pred             ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCcc
Confidence            112246899999999987642    2467899999999875432111111   1 11234588999999987443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.61  E-value=7e-06  Score=58.92  Aligned_cols=80  Identities=24%  Similarity=0.258  Sum_probs=64.9

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL  171 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L  171 (287)
                      ..+++|+++.+.  ...+|..+..+++|+.|+++++.+.+++ ....+|+|+.|++ +..+.+-..+. .+..||+|+.|
T Consensus        20 ~~L~~L~ls~N~--l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~-~l~~~~~L~~L   95 (124)
T d1dcea3          20 LLVTHLDLSHNR--LRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQ-PLVSCPRLVLL   95 (124)
T ss_dssp             TTCCEEECCSSC--CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTG-GGGGCTTCCEE
T ss_pred             CCCCEEECCCCc--cCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccCCCCCch-hhcCCCCCCEE
Confidence            579999987665  4567777788899999999999887776 6779999999999 87776533333 36789999999


Q ss_pred             Eeeee
Q 038991          172 CLKVY  176 (287)
Q Consensus       172 ~l~~c  176 (287)
                      ++.+.
T Consensus        96 ~l~~N  100 (124)
T d1dcea3          96 NLQGN  100 (124)
T ss_dssp             ECTTS
T ss_pred             ECCCC
Confidence            99986

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=1.2e-06  Score=72.31  Aligned_cols=131  Identities=15%  Similarity=0.098  Sum_probs=70.9

Q ss_pred             cCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCCcccE
Q 038991          139 CFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNC  216 (287)
Q Consensus       139 ~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~  216 (287)
                      .+++|+.|++ +..+..  .....+..+++|+.+.+.++ .... +..-.. ..++|+.|.+.++  ..    .+.....
T Consensus       103 ~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~l~l~~N-~l~~-i~~~~f~~~~~L~~L~l~~N--~l----~~l~~~~  172 (284)
T d1ozna_         103 GLGRLHTLHLDRCGLQE--LGPGLFRGLAALQYLYLQDN-ALQA-LPDDTFRDLGNLTHLFLHGN--RI----SSVPERA  172 (284)
T ss_dssp             TCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSS--CC----CEECTTT
T ss_pred             ccccCCEEecCCccccc--ccccccchhcccchhhhccc-cccc-cChhHhccccchhhcccccC--cc----cccchhh
Confidence            4566666666 544322  11123445666666666666 4333 211111 2356777776666  22    1101111


Q ss_pred             EEEcCccEEEEEEecccc---ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991          217 LIMAPLLQLLHVVDDLMV---SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       217 ~i~ap~L~~L~l~~~~~~---~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      ....++|+.+.+.++...   .-.+..+++|+.+++..+...      ......++.+++++.|.++.|.+.
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~------~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS------ALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS------CCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hccccccchhhhhhccccccChhHhhhhhhcccccccccccc------cccccccccccccCEEEecCCCCC
Confidence            124577888877766544   223566778877766533211      112467788999999999988653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=6e-06  Score=67.86  Aligned_cols=148  Identities=14%  Similarity=0.052  Sum_probs=92.7

Q ss_pred             CCcCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEE-EE
Q 038991          113 SIYSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFI-IS  189 (287)
Q Consensus       113 ~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~-i~  189 (287)
                      .+..+++|++|.++++....++. ....+++|+.+++ +-.+..  -....++.++.|+.|++.++ .... +..-. ..
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~--i~~~~f~~~~~L~~L~l~~N-~l~~-l~~~~f~~  175 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA--LPDDTFRDLGNLTHLFLHGN-RISS-VPERAFRG  175 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCE-ECTTTTTT
T ss_pred             hhcccccCCEEecCCcccccccccccchhcccchhhhccccccc--cChhHhccccchhhcccccC-cccc-cchhhhcc
Confidence            44456899999999987655332 3446789999999 665543  11234778999999999999 5433 21111 14


Q ss_pred             CCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc---ceeeecCCCceeEEEEEEEccccccChhhHHH
Q 038991          190 SSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV---SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQ  266 (287)
Q Consensus       190 ~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~---~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~  266 (287)
                      .++|+.+.+.++  ...    +......-..++|++|+++++...   ...++++++|++++++..... .......+..
T Consensus       176 l~~L~~l~l~~N--~l~----~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~-C~C~~~~l~~  248 (284)
T d1ozna_         176 LHSLDRLLLHQN--RVA----HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV-CDCRARPLWA  248 (284)
T ss_dssp             CTTCCEEECCSS--CCC----EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE-CSGGGHHHHH
T ss_pred             ccccchhhhhhc--ccc----ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC-CCccchHHHH
Confidence            578888888877  221    100111123589999999988765   235678999999888644321 1122334555


Q ss_pred             HHhcC
Q 038991          267 LLNGI  271 (287)
Q Consensus       267 ~l~~l  271 (287)
                      +++.+
T Consensus       249 ~l~~~  253 (284)
T d1ozna_         249 WLQKF  253 (284)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            56554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=6.4e-05  Score=59.74  Aligned_cols=103  Identities=12%  Similarity=0.179  Sum_probs=63.0

Q ss_pred             CCceEEEEEEecCccccCCCCC-cCCCcccEEEeceeeccc-cCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCcc
Q 038991           93 RDVRELELNIENQQRLELPESI-YSCRSLEVLKLDYDFDIA-VPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSI  168 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~-~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~L  168 (287)
                      +++++|+++.+.  ...+|... ..+++|++|+|+++.... ++. ....++.++.+.+ ...-.. ......+.++|+|
T Consensus        29 ~~l~~L~Ls~n~--i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~-~~~~~~~~~l~~L  105 (242)
T d1xwdc1          29 RNAIELRFVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNL  105 (242)
T ss_dssp             SCCSEEEEESCC--CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC-EECTTSEECCTTC
T ss_pred             CCCCEEECcCCc--CCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc-ccccccccccccc
Confidence            578888887654  34555543 457889999998886544 221 3456788888887 542221 1122346788999


Q ss_pred             ceEEeeeeeccCCCeeeEEEECCCcceEEEEEe
Q 038991          169 EELCLKVYLKYDGPATNFIISSSTLKRFYWTVL  201 (287)
Q Consensus       169 e~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~  201 (287)
                      +.|.+.++ .... ... .....+++.+.+...
T Consensus       106 ~~l~l~~~-~l~~-~~~-~~~~~~l~~l~~~~~  135 (242)
T d1xwdc1         106 QYLLISNT-GIKH-LPD-VHKIHSLQKVLLDIQ  135 (242)
T ss_dssp             CEEEEESC-CCCS-CCC-CTTTCBSSCEEEEEE
T ss_pred             cccccchh-hhcc-ccc-ccccccccccccccc
Confidence            99999888 5543 221 112345666665554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.25  E-value=1.6e-06  Score=73.51  Aligned_cols=38  Identities=18%  Similarity=0.239  Sum_probs=19.4

Q ss_pred             cCCCccEEEE-EEEeCCcc--hHHHHHccCCccceEEeeee
Q 038991          139 CFPNLKFLRV-SLQYPENQ--LTEKLFSSCPSIEELCLKVY  176 (287)
Q Consensus       139 ~~~~L~~L~L-~~~~~~~~--~l~~l~~~cp~Le~L~l~~c  176 (287)
                      .+++|+.|+| ++.+.+..  .+...+..++.|++|.+.+|
T Consensus        91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n  131 (344)
T d2ca6a1          91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN  131 (344)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred             hCCCcccccccccccccccccchhhhhcccccchheecccc
Confidence            3455666666 55443311  13334455566666666555

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.16  E-value=9.3e-06  Score=67.27  Aligned_cols=65  Identities=17%  Similarity=0.193  Sum_probs=28.8

Q ss_pred             cCccEEEEEEeccccce--eeecCCCceeEEEEEEEccccccC-hhhHHHHHhcCCcceEEEEecCeeE
Q 038991          220 APLLQLLHVVDDLMVSY--EVHDLQFLQTVNLAILFLQWSVLN-PWEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       220 ap~L~~L~l~~~~~~~~--~~~~~p~L~~~~l~~~~~~~~~~~-~~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      .|+|++|+++++....+  .+.++++|+.+++..+... .... .......+....+++.|.++.|.++
T Consensus       218 l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         218 TPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             STTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cccceeeecccccccccccccccccCCCEEECCCCccC-ccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            35666666665543321  3445566666665432110 0000 0001123444556666666655543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.07  E-value=5.3e-05  Score=62.77  Aligned_cols=184  Identities=13%  Similarity=-0.034  Sum_probs=110.1

Q ss_pred             CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccC-CCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991           93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVP-VSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE  170 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~  170 (287)
                      ..+++|+|+.+..-...+|..+..+.+|++|+|+++.+...+ .....++.|+.+++ ...+..  .+..-+..++.|+.
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~--~~p~~l~~l~~L~~  153 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG--TLPPSISSLPNLVG  153 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES--CCCGGGGGCTTCCE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccc--cCchhhccCcccce
Confidence            689999997643223368888899999999999999876643 24567899999999 655432  12233678999999


Q ss_pred             EEeeeeeccCCCeeeEEEECCC-cceEEEEEee-----cc-cc-----------ccccCCcccEEEEcCccEEEEEEecc
Q 038991          171 LCLKVYLKYDGPATNFIISSST-LKRFYWTVLV-----DD-YN-----------FAFNNFHHNCLIMAPLLQLLHVVDDL  232 (287)
Q Consensus       171 L~l~~c~~~~~~~~~l~i~~~~-Lk~L~l~~~~-----~~-~~-----------~~~~~~~~~~~i~ap~L~~L~l~~~~  232 (287)
                      +.+.++ ...+.+.......+. ++.+.+..+.     .. ..           ....+.........++|+.+.+.++.
T Consensus       154 l~l~~n-~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~  232 (313)
T d1ogqa_         154 ITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             EECCSS-CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             eecccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999888 432200000001112 2333322210     00 00           00011111122245788888887775


Q ss_pred             cc--ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991          233 MV--SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       233 ~~--~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~  285 (287)
                      ..  ...++.+++|+.+++..+...      +.+.+.+.++++++.|+++.|.|+
T Consensus       233 l~~~~~~~~~~~~L~~L~Ls~N~l~------g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         233 LAFDLGKVGLSKNLNGLDLRNNRIY------GTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             ECCBGGGCCCCTTCCEEECCSSCCE------ECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             ccccccccccccccccccCccCeec------ccCChHHhCCCCCCEEECcCCccc
Confidence            43  234667788888887543221      112355778999999999998775

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.03  E-value=1.8e-05  Score=61.05  Aligned_cols=89  Identities=20%  Similarity=0.084  Sum_probs=53.2

Q ss_pred             cccCCCCCcCCCcccEEEeceeeccc-c-CCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCe
Q 038991          107 RLELPESIYSCRSLEVLKLDYDFDIA-V-PVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPA  183 (287)
Q Consensus       107 ~~~l~~~~~~~~~L~~L~L~~~~~~~-~-~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~  183 (287)
                      ...+|..+.  .++++|.|+++.+.. . +.....+++|+.|+| +..+..  .....+.+.+.|+.|.++++ .... +
T Consensus        20 L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~--~~~~~~~~~~~L~~L~Ls~N-~l~~-l   93 (192)
T d1w8aa_          20 LKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG--IEPNAFEGASHIQELQLGEN-KIKE-I   93 (192)
T ss_dssp             CSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSC-CCCE-E
T ss_pred             cCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccc--ccccccccccccceeeeccc-cccc-c
Confidence            445665543  578888888887643 2 224457888888888 665543  12334667788888888888 5432 2


Q ss_pred             eeEEE-ECCCcceEEEEEe
Q 038991          184 TNFII-SSSTLKRFYWTVL  201 (287)
Q Consensus       184 ~~l~i-~~~~Lk~L~l~~~  201 (287)
                      ..-.. ..++|+.|.++++
T Consensus        94 ~~~~F~~l~~L~~L~L~~N  112 (192)
T d1w8aa_          94 SNKMFLGLHQLKTLNLYDN  112 (192)
T ss_dssp             CSSSSTTCTTCCEEECCSS
T ss_pred             CHHHHhCCCcccccccCCc
Confidence            11111 2355666666555

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.99  E-value=4.5e-05  Score=62.92  Aligned_cols=20  Identities=15%  Similarity=0.227  Sum_probs=15.8

Q ss_pred             HHHhcCCcceEEEEecCeeE
Q 038991          266 QLLNGILNCKSLTLSSGVIL  285 (287)
Q Consensus       266 ~~l~~l~~v~~L~l~~~~i~  285 (287)
                      ..+.++++++.|+++.+.|.
T Consensus       213 ~~~~~l~~L~~L~L~~N~L~  232 (305)
T d1xkua_         213 GSLANTPHLRELHLNNNKLV  232 (305)
T ss_dssp             TTGGGSTTCCEEECCSSCCS
T ss_pred             ccccccccceeeeccccccc
Confidence            56678889999999887653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.63  E-value=3.3e-05  Score=59.51  Aligned_cols=123  Identities=15%  Similarity=0.106  Sum_probs=81.2

Q ss_pred             ccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEE-EECCCcceEE
Q 038991          120 LEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFI-ISSSTLKRFY  197 (287)
Q Consensus       120 L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~-i~~~~Lk~L~  197 (287)
                      .+.++.++..+..+| ... .++++.|+| +-.+.. ..-...+.+.++|+.|.+.++ .... ...-. -..++|+.|.
T Consensus        10 ~~~v~Cs~~~L~~iP-~~l-p~~l~~L~Ls~N~i~~-~~~~~~f~~l~~L~~L~L~~N-~i~~-~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIP-RDI-PLHTTELLLNDNELGR-ISSDGLFGRLPHLVKLELKRN-QLTG-IEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TTEEECTTSCCSSCC-SCC-CTTCSEEECCSCCCCS-BCCSCSGGGCTTCCEEECCSS-CCCC-BCTTTTTTCTTCCEEE
T ss_pred             CCEEEEeCCCcCccC-CCC-CCCCCEEEeCCCCCcc-cccccccCCCceEeeeecccc-cccc-ccccccccccccceee
Confidence            456777777776676 222 378999999 776642 111234678999999999998 5543 21111 1357899999


Q ss_pred             EEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---eeecCCCceeEEEEEEE
Q 038991          198 WTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---EVHDLQFLQTVNLAILF  253 (287)
Q Consensus       198 l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~~~~  253 (287)
                      ++++  ...    +......-..|+|++|++.++....+   .+.++++|++++++...
T Consensus        85 Ls~N--~l~----~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          85 LGEN--KIK----EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCSC--CCC----EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             eccc--ccc----ccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccc
Confidence            9988  322    10112223469999999999987633   46788999999886543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.54  E-value=0.00026  Score=58.82  Aligned_cols=93  Identities=27%  Similarity=0.183  Sum_probs=63.6

Q ss_pred             HcCCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccC-Ccc
Q 038991           91 VMRDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSC-PSI  168 (287)
Q Consensus        91 ~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~c-p~L  168 (287)
                      ...++++|+|+...  ...+|..   .++|++|.|+++.+..+|   ..+.+|+.|++ +..+..       +... +.|
T Consensus        36 ~~~~l~~LdLs~~~--L~~lp~~---~~~L~~L~Ls~N~l~~lp---~~~~~L~~L~l~~n~l~~-------l~~lp~~L  100 (353)
T d1jl5a_          36 LDRQAHELELNNLG--LSSLPEL---PPHLESLVASCNSLTELP---ELPQSLKSLLVDNNNLKA-------LSDLPPLL  100 (353)
T ss_dssp             HHHTCSEEECTTSC--CSCCCSC---CTTCSEEECCSSCCSSCC---CCCTTCCEEECCSSCCSC-------CCSCCTTC
T ss_pred             HHcCCCEEEeCCCC--CCCCCCC---CCCCCEEECCCCCCcccc---cchhhhhhhhhhhcccch-------hhhhcccc
Confidence            34588899886543  3456653   367999999998877776   23678999998 765543       1223 469


Q ss_pred             ceEEeeeeeccCCCeeeEEEECCCcceEEEEEe
Q 038991          169 EELCLKVYLKYDGPATNFIISSSTLKRFYWTVL  201 (287)
Q Consensus       169 e~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~  201 (287)
                      +.|++.++ .... +... ...+.|+.|.+.++
T Consensus       101 ~~L~L~~n-~l~~-lp~~-~~l~~L~~L~l~~~  130 (353)
T d1jl5a_         101 EYLGVSNN-QLEK-LPEL-QNSSFLKIIDVDNN  130 (353)
T ss_dssp             CEEECCSS-CCSS-CCCC-TTCTTCCEEECCSS
T ss_pred             cccccccc-cccc-ccch-hhhccceeeccccc
Confidence            99999998 6554 4332 23568888888776

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.39  E-value=3.6e-06  Score=71.18  Aligned_cols=185  Identities=14%  Similarity=0.028  Sum_probs=111.7

Q ss_pred             CCceEEEEEEecCc---cccCCCCCcCCCcccEEEeceeecccc-----C---------CCcccCCCccEEEE-EEEeCC
Q 038991           93 RDVRELELNIENQQ---RLELPESIYSCRSLEVLKLDYDFDIAV-----P---------VSGMCFPNLKFLRV-SLQYPE  154 (287)
Q Consensus        93 ~~l~~L~l~~~~~~---~~~l~~~~~~~~~L~~L~L~~~~~~~~-----~---------~~~~~~~~L~~L~L-~~~~~~  154 (287)
                      +.+++|+++.+..+   ...+...+..+++|++|++++|.+...     .         ......+.|+.|.+ +..+.+
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccc
Confidence            57999998765432   222333445678899999998864220     0         01125788999999 766654


Q ss_pred             cc--hHHHHHccCCccceEEeeeeeccCCC-eee-E---EEECCCcceEEEEEeeccccccccCC--cccEEEEcCccEE
Q 038991          155 NQ--LTEKLFSSCPSIEELCLKVYLKYDGP-ATN-F---IISSSTLKRFYWTVLVDDYNFAFNNF--HHNCLIMAPLLQL  225 (287)
Q Consensus       155 ~~--~l~~l~~~cp~Le~L~l~~c~~~~~~-~~~-l---~i~~~~Lk~L~l~~~~~~~~~~~~~~--~~~~~i~ap~L~~  225 (287)
                      ..  .+...+..++.|+.|.+.+| ...+. ... +   ....++|+.|.++++  ...  ..+.  .....-..|+|++
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N--~i~--~~g~~~L~~~l~~~~~L~~  247 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN--TFT--HLGSSALAIALKSWPNLRE  247 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS--CCH--HHHHHHHHHHGGGCTTCCE
T ss_pred             cccccccchhhhhhhhcccccccc-cccccccccchhhhhcchhhhcccccccc--ccc--ccccccccccccccccchh
Confidence            22  25556788999999999999 54320 011 1   114678999999887  321  0110  0011124689999


Q ss_pred             EEEEeccccc---e----ee--ecCCCceeEEEEEEEccccccChhhHHHHHh-cCCcceEEEEecCee
Q 038991          226 LHVVDDLMVS---Y----EV--HDLQFLQTVNLAILFLQWSVLNPWEVVQLLN-GILNCKSLTLSSGVI  284 (287)
Q Consensus       226 L~l~~~~~~~---~----~~--~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~-~l~~v~~L~l~~~~i  284 (287)
                      |.++++....   .    .+  ...++|++++++.+..  .......+.+.++ ..++++.|.++.|.+
T Consensus       248 L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i--~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI--ELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC--BHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             hhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcC--ChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            9998886531   1    11  2346788888764421  1111224555554 678999999998775

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.00013  Score=54.12  Aligned_cols=68  Identities=13%  Similarity=0.117  Sum_probs=35.4

Q ss_pred             cccCCCCCcCCCcccEEEeceee-ccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991          107 RLELPESIYSCRSLEVLKLDYDF-DIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY  176 (287)
Q Consensus       107 ~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c  176 (287)
                      ....|..+...++|++|.++++. +..++. ...++++|+.|+| +..+..  --...+.+.++|+.|+|+++
T Consensus        20 ~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~--i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF--VAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE--ECTTGGGSCSCCCEEECCSS
T ss_pred             CccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCC--cccccccccccccceeccCC
Confidence            34445555556667777775443 333321 2335666666666 544432  01123555666666666666

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.00049  Score=50.91  Aligned_cols=109  Identities=12%  Similarity=-0.046  Sum_probs=67.2

Q ss_pred             CCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEE-EECCCc
Q 038991          116 SCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFI-ISSSTL  193 (287)
Q Consensus       116 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~-i~~~~L  193 (287)
                      .|...+.++.++....+.|.....+++|+.|++ +..... ..-...+.+.++|+.|+|+++ .... +..-. ...++|
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N-~l~~-i~~~~f~~l~~L   82 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKS-GLRF-VAPDAFHFTPRL   82 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSS-CCCE-ECTTGGGSCSCC
T ss_pred             CcCCCCeEEecCCCCccCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeecc-ccCC-cccccccccccc
Confidence            455566777777766665545557788899888 653221 111123678899999999998 5433 22111 145789


Q ss_pred             ceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc
Q 038991          194 KRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV  234 (287)
Q Consensus       194 k~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~  234 (287)
                      +.|+++++  ...    . ...-.+..++|+.|++.++...
T Consensus        83 ~~L~Ls~N--~l~----~-l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          83 SRLNLSFN--ALE----S-LSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CEEECCSS--CCS----C-CCSTTTCSCCCCEEECCSSCCC
T ss_pred             cceeccCC--CCc----c-cChhhhccccccccccCCCccc
Confidence            99999888  332    1 1111123457999999887653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=5.2e-05  Score=65.50  Aligned_cols=84  Identities=12%  Similarity=0.061  Sum_probs=42.7

Q ss_pred             CCceEEEEEEecCc---cccCCCCCcCCCcccEEEeceeecccc--CC----CcccCCCccEEEE-EEEeCCcc--hHHH
Q 038991           93 RDVRELELNIENQQ---RLELPESIYSCRSLEVLKLDYDFDIAV--PV----SGMCFPNLKFLRV-SLQYPENQ--LTEK  160 (287)
Q Consensus        93 ~~l~~L~l~~~~~~---~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~----~~~~~~~L~~L~L-~~~~~~~~--~l~~  160 (287)
                      ++++.|+|..+...   ...+...+..+++|++|+|+++.+.+.  ..    -....++|++|+| ++.+.+.+  .+..
T Consensus        27 ~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~  106 (460)
T d1z7xw1          27 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS  106 (460)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccc
Confidence            56666666655432   122233344566677777766654220  00    0012245777777 66554321  1334


Q ss_pred             HHccCCccceEEeeee
Q 038991          161 LFSSCPSIEELCLKVY  176 (287)
Q Consensus       161 l~~~cp~Le~L~l~~c  176 (287)
                      .+..|++|++|++.++
T Consensus       107 ~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1         107 TLRTLPTLQELHLSDN  122 (460)
T ss_dssp             HTTSCTTCCEEECCSS
T ss_pred             hhhccccccccccccc
Confidence            4556677777777666

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.009  Score=46.63  Aligned_cols=91  Identities=13%  Similarity=0.104  Sum_probs=56.4

Q ss_pred             cccCCCCCcCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCee
Q 038991          107 RLELPESIYSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPAT  184 (287)
Q Consensus       107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~  184 (287)
                      ...+|..++  +++++|+|+++.+..++.. ..++++|+.|+| +..+.+. .-...+.+++.+++|.+..| .......
T Consensus        20 l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~-i~~~~f~~l~~l~~l~~~~~-n~l~~~~   95 (242)
T d1xwdc1          20 VTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIRIEKA-NNLLYIN   95 (242)
T ss_dssp             CSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCE-ECSSSEESCTTCCEEEEECC-TTCCEEC
T ss_pred             CCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccce-eecccccccccccccccccc-ccccccc
Confidence            345665544  4789999998877666533 457889999988 6644321 00122567888888888776 3211011


Q ss_pred             -eEEEECCCcceEEEEEe
Q 038991          185 -NFIISSSTLKRFYWTVL  201 (287)
Q Consensus       185 -~l~i~~~~Lk~L~l~~~  201 (287)
                       ..--..++|+.|.+.++
T Consensus        96 ~~~~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          96 PEAFQNLPNLQYLLISNT  113 (242)
T ss_dssp             TTSEECCTTCCEEEEESC
T ss_pred             cccccccccccccccchh
Confidence             11234578888888887

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.84  E-value=0.00055  Score=51.01  Aligned_cols=43  Identities=7%  Similarity=-0.081  Sum_probs=21.8

Q ss_pred             ecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEec
Q 038991          239 HDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSS  281 (287)
Q Consensus       239 ~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~  281 (287)
                      ...++|+.++|+.+...........+.+.++..++++.|.++.
T Consensus        99 ~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          99 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            3455666666554432211111234566666666666666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.41  E-value=0.00051  Score=51.36  Aligned_cols=19  Identities=21%  Similarity=0.316  Sum_probs=9.1

Q ss_pred             HHHHHccCCccceEEeeee
Q 038991          158 TEKLFSSCPSIEELCLKVY  176 (287)
Q Consensus       158 l~~l~~~cp~Le~L~l~~c  176 (287)
                      +...+..++.|++|+|.+|
T Consensus        64 la~~L~~n~~L~~L~L~~n   82 (167)
T d1pgva_          64 LIELIETSPSLRVLNVESN   82 (167)
T ss_dssp             HHHHHHHCSSCCEEECCSS
T ss_pred             Hhhhhhhcccccceeeehh
Confidence            3334444555555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=94.07  E-value=0.0039  Score=51.26  Aligned_cols=52  Identities=21%  Similarity=0.160  Sum_probs=35.5

Q ss_pred             cCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCcceEEEEEe
Q 038991          139 CFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVL  201 (287)
Q Consensus       139 ~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~  201 (287)
                      .+|+|++|+| ++.+..      +-...|+|+.|++++| .... +..   ..++|+.|++++|
T Consensus       282 ~~~~L~~L~Ls~N~l~~------lp~~~~~L~~L~L~~N-~L~~-l~~---~~~~L~~L~L~~N  334 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLIE------LPALPPRLERLIASFN-HLAE-VPE---LPQNLKQLHVEYN  334 (353)
T ss_dssp             CCTTCCEEECCSSCCSC------CCCCCTTCCEEECCSS-CCSC-CCC---CCTTCCEEECCSS
T ss_pred             cCCCCCEEECCCCccCc------cccccCCCCEEECCCC-cCCc-ccc---ccCCCCEEECcCC
Confidence            4678888888 765543      2245788888888888 5544 332   2457888888877

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.006  Score=51.91  Aligned_cols=61  Identities=13%  Similarity=0.085  Sum_probs=33.2

Q ss_pred             CCceEEEEEEecCcc---ccCCCCCc-CCCcccEEEeceeecccc-----CCCcccCCCccEEEE-EEEeC
Q 038991           93 RDVRELELNIENQQR---LELPESIY-SCRSLEVLKLDYDFDIAV-----PVSGMCFPNLKFLRV-SLQYP  153 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~---~~l~~~~~-~~~~L~~L~L~~~~~~~~-----~~~~~~~~~L~~L~L-~~~~~  153 (287)
                      +.+++|+|+.+..++   ..+...+. ...+|++|+|++|.+.+.     +.....+++|+.|+| +..+.
T Consensus        55 ~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          55 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            468888876544321   11221221 234688888887765331     111235778888888 66554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.78  E-value=0.0022  Score=47.68  Aligned_cols=92  Identities=17%  Similarity=0.077  Sum_probs=58.8

Q ss_pred             hhHHHHHHc--CCceEEEEEEec-Cc---cccCCCCCcCCCcccEEEeceeeccc--cCC---CcccCCCccEEEE-EEE
Q 038991           84 KGWVSLAVM--RDVRELELNIEN-QQ---RLELPESIYSCRSLEVLKLDYDFDIA--VPV---SGMCFPNLKFLRV-SLQ  151 (287)
Q Consensus        84 ~~wl~~a~~--~~l~~L~l~~~~-~~---~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~---~~~~~~~L~~L~L-~~~  151 (287)
                      +..++....  +.+++|+|+... .+   ...+-..+..+.+|++|+|++|.+.+  ...   .....++|+.|+| ++.
T Consensus         4 ~~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_           4 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh
Confidence            344444444  478899886422 22   11222334456889999999886643  111   1125788999999 887


Q ss_pred             eCCcch---HHHHHccCCccceEEeeee
Q 038991          152 YPENQL---TEKLFSSCPSIEELCLKVY  176 (287)
Q Consensus       152 ~~~~~~---l~~l~~~cp~Le~L~l~~c  176 (287)
                      +.+ .+   +...+..++.|++|++.++
T Consensus        84 i~~-~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          84 LTP-ELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             CCH-HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             cch-HHHHHHHHHHHhCCcCCEEECCCC
Confidence            765 33   4555778889999999877

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.81  E-value=0.0018  Score=47.91  Aligned_cols=80  Identities=14%  Similarity=0.126  Sum_probs=40.2

Q ss_pred             CCceEEEEEEecCccc-cCCCCCcCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCc-----chHHHHHcc
Q 038991           93 RDVRELELNIENQQRL-ELPESIYSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPEN-----QLTEKLFSS  164 (287)
Q Consensus        93 ~~l~~L~l~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~-----~~l~~l~~~  164 (287)
                      ..+++|+|+.+..... .++..+..+++|+.|+|+++.+.+++. .......|+.|++ +-.+...     .-...++..
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~  144 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER  144 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTT
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHH
Confidence            4666666665543311 223333445667777777666544331 1223455666666 5433321     113355666


Q ss_pred             CCccceEE
Q 038991          165 CPSIEELC  172 (287)
Q Consensus       165 cp~Le~L~  172 (287)
                      ||+|+.|+
T Consensus       145 ~P~L~~LD  152 (162)
T d1koha1         145 FPKLLRLD  152 (162)
T ss_dssp             STTCCEET
T ss_pred             CCCCCEEC
Confidence            66666654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=88.72  E-value=0.016  Score=42.51  Aligned_cols=38  Identities=5%  Similarity=0.065  Sum_probs=17.9

Q ss_pred             cCCCccEEEE-EEEeCCc--chHHHHHccCCccceEEeeee
Q 038991          139 CFPNLKFLRV-SLQYPEN--QLTEKLFSSCPSIEELCLKVY  176 (287)
Q Consensus       139 ~~~~L~~L~L-~~~~~~~--~~l~~l~~~cp~Le~L~l~~c  176 (287)
                      .+++|++|+| ++.+.+.  ..+...+..++.|+.|.+.+|
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc
Confidence            3445555555 4433321  113344455555666655555

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.10  E-value=0.0041  Score=45.92  Aligned_cols=15  Identities=20%  Similarity=0.275  Sum_probs=6.5

Q ss_pred             HccCCccceEEeeee
Q 038991          162 FSSCPSIEELCLKVY  176 (287)
Q Consensus       162 ~~~cp~Le~L~l~~c  176 (287)
                      +..||+|+.|+++++
T Consensus        87 ~~~l~~L~~L~Ls~N  101 (162)
T d1koha1          87 VQKAPNLKILNLSGN  101 (162)
T ss_dssp             HHHSTTCCCCCCTTS
T ss_pred             HhhCCcccccccccC
Confidence            334444444444444