Citrus Sinensis ID: 038993

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
Protein Sequence
MDDRDPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARDRSIITVGLGSTDTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLCIATNRLPQTLAIWTHLRESTAFYRRQRLPWIPKRLVAFFMGLVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSILEEQVISPSPEFYDYSLPFESLEPPSLLRGWHPTSFGAQ
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHcccHHHHHHHHcccHHHHHHcccHHHHHHHHHHccccccEEEEEEccccccccccccccccEEcccccccccccccEEEEEEEEcEEEEEEcccccEEEEEccccccccEEEccccccccccEEEEEEEEEEEEEEEcccccccccEEEEEEcccccEEEEccccccccccccccEEEcccEEEEEEEcccccEEEEEEEccccEEEEEccccccccccccEEEEcEEEEEEccEEEEEEEcccccccccEEEEEEccccccccEEEEEEEccccccccccccccccccEEEEccccEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccEEEEEEEEEEEEEEEcccccccccccccccccccccEEEEEEEEcccEEEEEEccccccEEEEccccccEEEEEcccccccccccEEEEEEEccccccEEEEcccccEEEEEEEEcccccEEEEccccccEccccccEEEcccEEEEEEcccccccEEEEEEccccccccccccccccccccccccEEEEEEEcHHHEEEEEEccccccccEEEEEEEEcccccEEHHEEEEEcccccccccccccccccEEEEEcccEEEEEEcccccccc
Coil and Loop (DISEMBL)
mddrdplplhiIDDILSRLHVKQLLRLRCVSKTwrdlidgpdfiklqlsrnqardrSIITVGLGSTDTLYEEkyengciatkldhpwmdskQWIEVVGCCNgllciatnrlpQTLAIWTHLRESTAFYrrqrlpwipKRLVAFFMGLVRIARRsgdacfggaaEVKVYSLARNSWkriqdippcyiardspgvyasgsLHWIVMAEYGRHDFILALDlsdeaykelplpppvlletgcrvranyfgvldngclclvsnygggyrtplsHVWVMTEYGVKDSWTKLFSILEEqvispspefydyslpfesleppsllrgwhptsfgaq
Flexible Loop (DISEMBL)
MDDRDPLPLHIIDDILSRLHVKQLLRLRCVSktwrdlidgpdfiklqlsrnqardrsiitvglgstdtlyEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLCIATNRLPQTLAIWTHLRESTAfyrrqrlpwiPKRLVAFFMGLVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSILEEQVISPSPEFYDYSLPFESLEPPSLLRGWHPTSFGAQ
Low Complexity Region (SEG)
MDDRDPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARDRSIITVGLGSTDTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLCIATNRLPQTLAIWTHLRESTAFYRRQRLPWIPKRLVAFFMGLVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKElplpppvllETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSILEEQVISPSPEFYDYslpfesleppsllRGWHPTSFGAQ
Disordered region (IsUnstruct)
*******PLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARDRSIITVGLGSTDTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLCIATNRLPQTLAIWTHLRESTAFYRRQRLPWIPKRLVAFFMGLVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSILEEQVISPSPEFYDYSLPFE*******************
Disordered Region (DISOPRED)
***RDPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARDRSIITVGLGSTDTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLCIATNRLPQTLAIWTHLRESTAFYRRQRLPWIPKRLVAFFMGLVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSILEEQVISPSPEFYDYSLPFESLEPPSLLRGW*PTS****
Disordered Region (DISEMBL)
MDDRDPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARDRSIITVGLGSTDTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLCIATNRLPQTLAIWTHLRESTAFYRRQRLPWIPKRLVAFFMGLVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSILEEQVISPSPEFYDYSLPFESLEPPSLLRGWHPTSFGAQ
Disordered Region (DISPRO)
****DPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARDRSIITVGLGSTDTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLCIATNRLPQTLAIWTHLRESTAFYRRQRLPWIPKRLVAFFMGLVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSILEEQVISPSPEFYDYSLPFESLEPPSLLRGWHPTS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDRDPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARDRSIITVGLGSTDTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLCIATNRLPQTLAIWTHLRESTAFYRRQRLPWIPKRLVAFFMGLVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSILEEQVISPSPEFYDYSLPFESLEPPSLLRGWHPTSFGAQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	327	2.2.26 [Sep-21-2011]
Q9SU30	413	F-box protein CPR30 OS=Ar	yes	no	0.816	0.646	0.314	1e-21
Q8GXC7	427	F-box/kelch-repeat protei	no	no	0.788	0.604	0.255	2e-16
Q9SFC7	417	F-box protein At3g07870 O	no	no	0.822	0.645	0.273	2e-15
Q9SUY0	402	F-box protein At4g22390 O	no	no	0.801	0.651	0.285	1e-14
Q9LTC3	362	Putative F-box protein At	no	no	0.886	0.801	0.259	7e-14
Q9LU24	360	Putative F-box protein At	no	no	0.856	0.777	0.273	4e-13
Q9LIR8	364	F-box/kelch-repeat protei	no	no	0.801	0.719	0.262	2e-11
Q9ZNQ3	347	F-box/LRR-repeat/kelch-re	no	no	0.629	0.593	0.253	1e-09
Q9LX89	445	F-box protein At5g10340 O	no	no	0.801	0.588	0.233	1e-08
Q7X7A9	312	F-box protein At1g11270 O	no	no	0.666	0.698	0.235	2e-08

>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2

 Score =  103 bits (258), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 144/315 (45%), Gaps = 48/315 (15%)

Query: 7   LPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARDRSIITVGLGST 66
           +P+ I++DI  RL  K L+R R +SK    LI+ PDFI+  L R       ++ +  G+ 
Sbjct: 4   IPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGAL 63

Query: 67  DTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLCIATNRLPQTLAIWTHLRESTA 126
             LY    ++    + ++HP M      EV G  NGL+ ++ +  P  LA++     ST 
Sbjct: 64  -RLYSVDLDSLDSVSDVEHP-MKRGGPTEVFGSSNGLIGLSNS--PTDLAVFN---PSTR 116

Query: 127 FYRRQ-----RLPWIPKRLVAFFMGL-----------VRIARRSGDA-----CFGGAAEV 165
              R       LP         F GL           VR+ +   D+     C     EV
Sbjct: 117 QIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGC-SFPYEV 175

Query: 166 KVYSLARNSWKRIQDIPPC----------YIARDSPGVYASGSLHWIVMAEYG--RHDFI 213
           KV+SL +NSWKRI+ +              + R   GV A  SLHW++    G    + I
Sbjct: 176 KVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLI 235

Query: 214 LALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVM 273
           +  DL+ E ++ +  P  V    G        GVLD GCLCL+ NY   Y      VW+M
Sbjct: 236 VRFDLALEEFEIVRFPEAV--ANGNVDIQMDIGVLD-GCLCLMCNYDQSY----VDVWMM 288

Query: 274 TEYGVKDSWTKLFSI 288
            EY V+DSWTK+F++
Sbjct: 289 KEYNVRDSWTKVFTV 303

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 140/341 (41%), Gaps = 83/341 (24%)

Query: 7   LPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLS---RNQARDRSIITVGL 63
           LP  II +IL RL  K + R RCVSK +  L   P F K+ L    RN++  RS+    +
Sbjct: 36  LPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESV-RSLHRKLI 94

Query: 64  GSTDTLYEEKYEN------GCIATKLDHPWMDS--------------------------- 90
            S+  LY   + +         A + ++P  D                            
Sbjct: 95  VSSHNLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLKLN 154

Query: 91  -----KQWIEVVGCCNGLLCIA---------------TNRLPQTLAIWTHLRESTAFYRR 130
                + W+E+VG  NGL+CI+               + RLP+      + R  +  Y R
Sbjct: 155 AKSYRRNWVEIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPE------NFRPKSVEYER 208

Query: 131 QRLPWIPKRLVAFF--MGLVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIAR 188
                             LV++   S D       +  VYSL  +SW+RI ++   Y   
Sbjct: 209 DNFQTYGFGFDGLTDDYKLVKLVATSEDIL-----DASVYSLKADSWRRICNLN--YEHN 261

Query: 189 D---SPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYF 245
           D   + GV+ +G++HW+          ++A D+  E ++E+P+P        C  R + F
Sbjct: 262 DGSYTSGVHFNGAIHWVFTESRHNQRVVVAFDIQTEEFREMPVPDEA---EDCSHRFSNF 318

Query: 246 GVLD-NGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKL 285
            V   NG LC+V++    +      +WVM+EYG   SW+++
Sbjct: 319 VVGSLNGRLCVVNSCYDVH----DDIWVMSEYGEAKSWSRI 355

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 133/318 (41%), Gaps = 49/318 (15%)

Query: 5   DPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQA-----RDRSII 59
           + LP  II DI SRL +  + RL  V ++WR ++     +    S            S I
Sbjct: 26  ESLPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHGRLSSSSSSPTKPCLLLHCDSPI 85

Query: 60  TVGLGSTDTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLCIATNRLPQTLAIWT 119
             GL   D   EEK        K    +  S    +VVG CNGLLC++ +    +L ++ 
Sbjct: 86  RNGLHFLDLSEEEKR---IKTKKFTLRFASSMPEFDVVGSCNGLLCLSDSLYNDSLYLYN 142

Query: 120 -------HLRESTAFYRRQRLPW------IPKRLVAFFMGLVRIARRSGDACFGG----- 161
                   L E +  Y  Q L +      + K      +   R +  + +  + G     
Sbjct: 143 PFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRGRIQ 202

Query: 162 --AAEVKVYSLARN------SWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHD-F 212
              +EV++ +L+        SW+ +   P  ++ R S  +  +G LH++        D  
Sbjct: 203 YKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEAL-VNGRLHFVTRPRRHVPDRK 261

Query: 213 ILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLV--SNYGGGYRTPLSHV 270
            ++ DL DE +KE+P P     + G   R N+  V   GCLC V   NYG         +
Sbjct: 262 FVSFDLEDEEFKEIPKP-----DCGGLNRTNHRLVNLKGCLCAVVYGNYGK------LDI 310

Query: 271 WVMTEYGVKDSWTKLFSI 288
           WVM  YGVK+SW K +SI
Sbjct: 311 WVMKTYGVKESWGKEYSI 328

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUY0|FB244_ARATH F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 143/329 (43%), Gaps = 67/329 (20%)

Query: 8   PLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARDRSIITVGLGS-- 65
           P  +I+++  RL    L++ R +SK    LID P+F+   L R       ++ +  G   
Sbjct: 5   PTDLINEMFLRLRATTLVKCRVLSKPCFSLIDSPEFVSSHLRRRLETGEHLMILLRGPRL 64

Query: 66  TDTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLCIATNRLPQTLAIWTHLREST 125
             T+  +  EN    + + HP + +  + EV G  NG++ +  +  P  LAI+     + 
Sbjct: 65  LRTVELDSPEN---VSDIPHP-LQAGGFTEVFGSFNGVIGLCNS--PVDLAIF-----NP 113

Query: 126 AFYRRQRLPW----IPKRLVA---FFMGL-----------VRIAR---RSGDACFGGAAE 164
           +  +  RLP      P+R +     F GL           VRI +   + G   F    E
Sbjct: 114 STRKIHRLPIEPIDFPERDITREYVFYGLGYDSVGDDFKVVRIVQCKLKEGKKKFPCPVE 173

Query: 165 VKVYSLARNSWKRI------QDIPPCY----IARDSPGVYASGSLHWIVMAEYGRHDF-- 212
           VKV+SL +NSWKR+      Q +   Y    + R   GV  +  LHWI+    G   F  
Sbjct: 174 VKVFSLKKNSWKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWILPRRQGVIAFNA 233

Query: 213 ILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSH--V 270
           I+  DL+ +    L  P  + +E    +     GVLD GC+CL+           SH  V
Sbjct: 234 IIKYDLASDDIGVLSFPQELYIEDNMDI-----GVLD-GCVCLMC------YDEYSHVDV 281

Query: 271 WVMTEYGVKDSWTKLFSILEEQVISPSPE 299
           WV+ EY    SWTKL+ +       P PE
Sbjct: 282 WVLKEYEDYKSWTKLYRV-------PKPE 303

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTC3|FB179_ARATH Putative F-box protein At3g23260 OS=Arabidopsis thaliana GN=At3g23260 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 133/335 (39%), Gaps = 45/335 (13%)

Query: 7   LPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARDRSII------- 59
           LP+ + ++ILSR+  K L RLR  SK W  L     F K + S N  ++  II       
Sbjct: 6   LPVELQEEILSRVPAKYLARLRSTSKQWNALSKTGSFAK-KHSANATKEPLIIMLKDSRV 64

Query: 60  ---TVGLGSTDTLYEEKYENGC-IATKLDHPWMDSKQWIEVVGCCNGLLCIATNRLPQTL 115
              +V L        + +E G  +  K  H        I  V  C+GLL + + +   TL
Sbjct: 65  YLASVNLHGVHNNVAQSFELGSRLYLKDPH--------ISNVFHCDGLLLLCSIK-ENTL 115

Query: 116 AIWT-------HLRESTAFYRRQ---RLPWIPKRLVAFFMGLVRIARRSGDACFGGAAEV 165
            +W         ++   ++Y+      L +  K     +  L  I++      F    E 
Sbjct: 116 EVWNPCSGEAKLIKPRHSYYKESDFYALGYDNKSSCKKYKVLRVISQVHVQGDF--KIEY 173

Query: 166 KVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKE 225
           ++Y    +SW R+         R    V   GS +W+V   Y  + + L+ D S E ++ 
Sbjct: 174 EIYDFTNDSW-RVHGATTELSIRQKHPVSVKGSTYWVVRNRYFPYKYFLSFDFSTERFQS 232

Query: 226 LPLPPPV-LLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTK 284
           L LP P   L T          V+    LCL   Y     +   +VWV T  G   SW+K
Sbjct: 233 LSLPQPFPYLVTD-------LSVVREEQLCLFGYYNWSTTSEDLNVWVTTSLGSVVSWSK 285

Query: 285 LFSILEEQVISPSPEFYDYSLPFESLEPPSLLRGW 319
             +I   Q+I P  + +DY + F   E    L  W
Sbjct: 286 FLTI---QIIKPRVDMFDYGMSFLVDEQNKSLVCW 317

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1

 Score = 75.9 bits (185), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 124/311 (39%), Gaps = 31/311 (9%)

Query: 7   LPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARDRSIITVGLGST 66
           LP  +  +IL RL +K L R RCV KTWRDLI+ P F +     + A+  S         
Sbjct: 5   LPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFTETYRDMSPAKFVSFYDKNFYML 64

Query: 67  DTLYEEKYENGCIATKLDHPWMDSKQWIEVVGC---CNGLLCIATNRLPQTLAIWTHLRE 123
           D     + ++  I  KLD P    +  I+   C   C+G LC+       TL +W    +
Sbjct: 65  DV----EGKHPVITNKLDFPL--DQSMIDESTCVLHCDGTLCVTLKN--HTLMVWNPFSK 116

Query: 124 STAFYRRQRLPWIPKRLVAFFMGLVRIARRSGDACFGGAAEVK---VYSLARNSWKRIQD 180
               ++    P I +       G   +        F    +V    V+     SW     
Sbjct: 117 Q---FKIVPNPGIYQDSNILGFGYDPVHDDYKVVTFIDRLDVSTAHVFEFRTGSWGESLR 173

Query: 181 IP-PCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKELPLPPPVLLETGCR 239
           I  P +  RD  G +    L+WI         FIL  +LS   Y++LPLP   +   G  
Sbjct: 174 ISYPDWHYRDRRGTFLDQYLYWIAYRSSADR-FILCFNLSTHEYRKLPLP---VYNQG-- 227

Query: 240 VRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSILEEQVISPSPE 299
           V +++ GV     LC+           +S   VM + G   SW+K+ S+     IS    
Sbjct: 228 VTSSWLGVTSQK-LCITEYEMCKKEIRIS---VMEKTG---SWSKIISLSMSSFISVQDR 280

Query: 300 FYDYSLPFESL 310
            YDY + F S 
Sbjct: 281 IYDYQVEFVSF 291

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 130/308 (42%), Gaps = 46/308 (14%)

Query: 7   LPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDF-----IKLQLSRNQARDRS---I 58
           LPL ++++IL RL VK L R +CV  +WR LI    F     + L+ S+     +S   +
Sbjct: 14  LPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYGV 73

Query: 59  ITVGLGSTDTLYEEKYENGCIATKLDHPW-MDSKQWIEVVGCCNGLLCIATNRLPQTLAI 117
           IT       +       N       +H   +  + + +VVG C+GL+C   +   ++L +
Sbjct: 74  ITTSRYHLKSCCIHSLYNASTVYVSEHDGELLGRDYYQVVGTCHGLVCFHVD-YDKSLYL 132

Query: 118 WTHLRESTAFYRRQRLPWIP------KRLVAFFMG---------LVRIARRSGDACFGGA 162
           W     +     +QRL          + +V +  G         +V + ++         
Sbjct: 133 W-----NPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALLQQRHQV----K 183

Query: 163 AEVKVYSLARNSWKRIQDIPPCYIARDSP--GVYASGSLHWIVMAEYGRHDFILALDLSD 220
            E K+YS  +  W+     P   +  D    G+Y +G+L+            I++ D+S 
Sbjct: 184 IETKIYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLN-WAATSSSSSWTIISYDMSR 242

Query: 221 EAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKD 280
           + +KELP   PV    GC       G L  GCL +V    G      + VWVM E+G   
Sbjct: 243 DEFKELP--GPVCCGRGCFTMT--LGDL-RGCLSMVCYCKGAN----ADVWVMKEFGEVY 293

Query: 281 SWTKLFSI 288
           SW+KL SI
Sbjct: 294 SWSKLLSI 301

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNQ3|FBLK3_ARATH F-box/LRR-repeat/kelch-repeat protein At2g27520 OS=Arabidopsis thaliana GN=At2g27520 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 94/233 (40%), Gaps = 27/233 (11%)

Query: 4   RDPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARDRSIITVGL 63
           R  LP  ++D+ILSRL    L RLR   K W  L   P+FI  Q  +   +D  ++    
Sbjct: 3   RLDLPWDLVDEILSRLPATSLGRLRFTCKRWNALFKDPEFITKQFHKAAKQDLVLMLSNF 62

Query: 64  G--STDTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLCIATNRLPQTLAIWTHL 121
           G  S  T  +E   N  IA                V  CNGLL  +T    +T  +  + 
Sbjct: 63  GVYSMSTNLKEIPNNIEIAQ---------------VFHCNGLLLCSTEEGNKTKLVVVNP 107

Query: 122 RESTAFYRRQRLPWIPKRLVAFFMGLVRIARRSGDA-----CFGGAAEVKVYSLARNSWK 176
                 +   R  +     +A   G     ++S D+        G   V+++ L  NSW+
Sbjct: 108 CTGQTRWIEPRTDYNYNHDIALGYG-NNSTKKSYDSYKILRITYGCKLVEIFELKSNSWR 166

Query: 177 RIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKELPLP 229
            +  + P        GV   G+ +W+   ++     IL+ D + E ++ +PLP
Sbjct: 167 VLSKVHPNVEKHYYGGVSFKGNTYWLSYTKFN----ILSFDFTTETFRSVPLP 215

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX89|FB255_ARATH F-box protein At5g10340 OS=Arabidopsis thaliana GN=At5g10340 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 130/326 (39%), Gaps = 64/326 (19%)

Query: 7   LPLHIID-DILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQAR---DRSIITVG 62
           LP  +I+  I+ RL VK LL+ + VSK W   I  P F + QL  + ++   D  ++ V 
Sbjct: 69  LPHDVIEYHIMVRLDVKTLLKFKSVSKQWMSTIQSPSFQERQLIHHLSQSSGDPHVLLVS 128

Query: 63  L------------GSTDTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLCIAT-N 109
           L             S + L     E+   + ++  PW D K +      C+GL+C+ +  
Sbjct: 129 LYDPCARQQDPSISSFEALRTFLVESSAASVQIPTPWED-KLYFVCNTSCDGLICLFSFY 187

Query: 110 RLPQTLAIWTHLRESTAFYRRQRLPWIPKRLVAF----------------FMGLVRIARR 153
            LP  +     +  +T ++R    P    +LVA                   G  +I+  
Sbjct: 188 ELPSIV-----VNPTTRWHRT--FPKCNYQLVAADKGERHECFKVACPTPGFGKDKISGT 240

Query: 154 SGDACFGGAAEV---------KVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVM 204
                   +AE+         +V+  A N+W+ +    P  I      VY  GSLHW   
Sbjct: 241 YKPVWLYNSAELDLNDKPTTCEVFDFATNAWRYVFPASPHLILHTQDPVYVDGSLHWFTA 300

Query: 205 AEYGRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDN--GCLCLVSNYGGG 262
             +     +L+LDL  E ++ +   P +       V   Y+ V+ N    LC+       
Sbjct: 301 LSHEGETMVLSLDLHSETFQVISKAPFL------NVSDEYYIVMCNLGDRLCVSEQ---- 350

Query: 263 YRTPLSHVWVMTEYGVKDSWTKLFSI 288
            + P   +W + +   K +W +++SI
Sbjct: 351 -KWPNQVIWSLDDSDHK-TWKQIYSI 374

Arabidopsis thaliana (taxid: 3702)

>sp|Q7X7A9|FB4_ARATH F-box protein At1g11270 OS=Arabidopsis thaliana GN=At1g11270 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 99/242 (40%), Gaps = 24/242 (9%)

Query: 7   LPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRN-QARDRSIITVGLGS 65
           LP  ++  IL RL V+ LLR +CVS  W+  I+   F + QL R  ++R   ++ V    
Sbjct: 35  LPHDVVGLILERLPVESLLRFKCVSNQWKSTIESQCFQERQLIRRMESRGPDVLVVSFAD 94

Query: 66  TDTLYEEKYENG-CIATKLDHPWMDSKQWIEVVGCCNGLLCI----ATNRLPQTLAIW-- 118
            +  Y  K   G  I +    P + +   +   G C GL+CI    + N +      W  
Sbjct: 95  DEDKYGRKAVFGSSIVSTFRFPTLHT---LICYGSCEGLICIYCVYSPNIVVNPATKWHR 151

Query: 119 ----THLRESTAFYRRQRLPWIPKRLVAFFMGLVRIARR------SGDACFGGAAEVKVY 168
               ++L++       ++    P   +AF    +    +      S +         +V+
Sbjct: 152 SCPLSNLQQFLDDKFEKKEYDFPTPKLAFGKDKLNGTYKQVWLYNSSEFRLDDVTTCEVF 211

Query: 169 SLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKELPL 228
             + N+W+ +    P  I      VY+ GS+HW+     G+   IL+  L  E ++ L  
Sbjct: 212 DFSNNAWRYVHPASPYRINDYQDPVYSDGSVHWLTE---GKESKILSFHLHTETFQVLCE 268

Query: 229 PP 230
            P
Sbjct: 269 AP 270

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
224089629	396	f-box family protein [Populus trichocarp	0.816	0.674	0.357	4e-37
255583943	389	ubiquitin-protein ligase, putative [Rici	0.822	0.691	0.364	2e-35
356562593	382	PREDICTED: F-box protein CPR30-like [Gly	0.788	0.675	0.327	9e-29
356522051	385	PREDICTED: F-box protein CPR30-like [Gly	0.788	0.670	0.316	2e-28
356532341	392	PREDICTED: F-box protein CPR30-like [Gly	0.847	0.706	0.330	1e-27
359806236	406	uncharacterized protein LOC100815072 [Gl	0.886	0.714	0.317	1e-27
356555728	394	PREDICTED: F-box protein CPR30-like [Gly	0.831	0.690	0.306	2e-27
357480485	392	F-box family protein [Medicago truncatul	0.788	0.658	0.335	6e-27
357447909	409	F-box protein [Medicago truncatula] gi|3	0.859	0.687	0.312	2e-26
356555602	405	PREDICTED: F-box/kelch-repeat protein At	0.883	0.713	0.311	5e-26

>gi|224089629|ref|XP_002308787.1| f-box family protein [Populus trichocarpa] gi|222854763|gb|EEE92310.1| f-box family protein [Populus trichocarpa]

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/319 (35%), Positives = 168/319 (52%), Gaps = 52/319 (16%)

Query: 7   LPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARDRSIITVGLGST 66
           LPL +I +IL RL  K+LL  R VSK W  LIDGP+F+KL L  +     ++  + L +T
Sbjct: 4   LPLEMIAEILCRLPAKELLCCRSVSKPWCALIDGPNFVKLHLKHSMDTSSNLYII-LRTT 62

Query: 67  DTLYEEKYE-----NGCIATK-LDHPWMDSKQWIEVVGCCNGLLCIATNRLPQTLAIWTH 120
             ++   +E     N C+  K L+HP M     I+V+G  NGLLCI+   +   +A+W  
Sbjct: 63  SHVHYMDFEQNLVLNDCVTLKELNHPLMCYNHGIKVLGSVNGLLCISN--VVDDIAVW-- 118

Query: 121 LRESTAFYRRQRLPWIPKRLVAFF--------------------MGLVRIARRSGDACFG 160
              + +  + + +P++P  L  +F                      LVRIA+  G     
Sbjct: 119 ---NPSTRKHRVVPFLPIELKRYFGTKSCSVYVFGFGYDSVRDDYKLVRIAQFGGGGKRS 175

Query: 161 GAAEVKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMA--EYGRHDFILALDL 218
             +EVKVYSL + SW+RI D+P C     + GV+A+G+LHW+V    E    + ++ALDL
Sbjct: 176 FESEVKVYSLRKQSWRRIGDMPYCVHYPGANGVFANGALHWVVGENPESNVANIVVALDL 235

Query: 219 SDEAYKELPLPPPVLLETGCRVRANYF---GVLDNGCLCLVSNYGGGYRTPLSHVWVMTE 275
             E Y+E+  P             N++   GVL  GCLC ++N+ G        VW+M E
Sbjct: 236 GVEDYREVLQPE--------YKDKNFYIDLGVL-RGCLCFLANFLG----ERVDVWMMKE 282

Query: 276 YGVKDSWTKLFSILEEQVI 294
           YGVK+SWTKLFS+ + +VI
Sbjct: 283 YGVKESWTKLFSVAQYEVI 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583943|ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/310 (36%), Positives = 163/310 (52%), Gaps = 41/310 (13%)

Query: 7   LPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARDRSIITVGLGST 66
           LPL +I +IL RL  K+LL  RCVSK WR LID P FI L L+ +       +++ L S+
Sbjct: 4   LPLEMIAEILCRLTAKKLLCCRCVSKRWRTLIDSPTFIYLHLN-HSIESPCNLSIILKSS 62

Query: 67  DTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLCIATNRLPQTLAIWTHLRESTA 126
           + LY   ++       LDHP M     ++++G CNGLLCI    +   +A+W     + +
Sbjct: 63  E-LYSLSFDLLDNIQPLDHPLMCYNHGVKILGSCNGLLCICN--IVDDIALW-----NPS 114

Query: 127 FYRRQRLPWIPKRLVAFF--------------------MGLVRIARRSGDACFGGAAEVK 166
               + +P++P  L  +F                      LVRIA+  G       +EVK
Sbjct: 115 IRAHRVVPYLPVELKRYFGMCSCRVSVFGFGYDLSNDDYKLVRIAQFGGVDRKSFESEVK 174

Query: 167 VYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMA--EYGRHDFILALDLSDEAYK 224
           V+SL +NSW+RI D+P C +     G+YA+G+LHW+V    +    D I+ALDL  E Y 
Sbjct: 175 VFSLRKNSWRRIADMPYCVLYPGENGIYANGALHWLVSQDPDSTVADTIVALDLGVEDYH 234

Query: 225 ELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTK 284
              +P P  ++  C +     GVL  GCL L++ Y    R+    VWVM EY VK+SW+K
Sbjct: 235 --VVPKPEFVDMNCNMGV---GVL-QGCLSLLA-YA---RSERVDVWVMEEYMVKESWSK 284

Query: 285 LFSILEEQVI 294
           LFS+   +VI
Sbjct: 285 LFSVARLEVI 294

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562593|ref|XP_003549554.1| PREDICTED: F-box protein CPR30-like [Glycine max]

 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 102/311 (32%), Positives = 149/311 (47%), Gaps = 53/311 (17%)

Query: 7   LPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQA----RDRSIITVG 62
           LP+ ++ +ILSRL VK ++RLR   K WR +ID   FI   L+++      R RS +   
Sbjct: 4   LPVEVVTEILSRLPVKSVIRLRSTCKWWRSIIDSRHFILFHLNKSHTSLILRHRSQL-YS 62

Query: 63  LGSTDTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLCIATNRLPQTLAIWT--- 119
           L     L    +E       L HP M     I+V+G  NGLLCI+   +   +A+W    
Sbjct: 63  LDLKSLLDPNPFE-------LSHPLMCYSNSIKVLGSSNGLLCISN--VADDIALWNPFL 113

Query: 120 -----------HLRESTAFYRR-----QRLPWIPKRLVAFFMGLVRIARRSGDACFGGAA 163
                      H  ES+ F  R        P    +L++     V + +R+ D      +
Sbjct: 114 RKHRILPSDRFHRPESSLFAARVYGFGHHPPSNDYKLLSITY-FVDLHKRTFD------S 166

Query: 164 EVKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEY--GRHDFILALDLSDE 221
           +V++Y+L  +SWK +  +P       + GV+ SGSLHW+V  +      D I+A DL+ E
Sbjct: 167 QVQLYTLKSDSWKNLPSMPYALCCARTMGVFVSGSLHWLVTRKLQPDEPDLIVAFDLTSE 226

Query: 222 AYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDS 281
            + E+PLP  V      +V       L  GCLC+V + G G+     HVWVM  YG +DS
Sbjct: 227 TFCEVPLPATVNGNFDMQV------ALLGGCLCVVEHRGTGF-----HVWVMRVYGSRDS 275

Query: 282 WTKLFSILEEQ 292
           W KLFS+ E  
Sbjct: 276 WEKLFSLTENH 286

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522051|ref|XP_003529663.1| PREDICTED: F-box protein CPR30-like [Glycine max]

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 151/310 (48%), Gaps = 52/310 (16%)

Query: 7   LPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQA----RDRSIITVG 62
           LP+ ++ +ILSRL VK ++RLR   K WR +ID   F+   L+++ +    R RS     
Sbjct: 5   LPVEVVTEILSRLPVKSVIRLRSTCKWWRSIIDSRHFVLFHLNKSHSSLILRHRS----H 60

Query: 63  LGSTDTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLCIATNRLPQTLAIWT-HL 121
           L S D    E+        +L HP M     I+V+G  NGLLCI+   +   +A+W   L
Sbjct: 61  LYSLDLKSPEQN-----PVELSHPLMCYSNSIKVLGSSNGLLCISN--VADDIALWNPFL 113

Query: 122 RESTAF----YRRQRLPWIPKRLVAF-------------FMGLVRIARRSGDACFGGAAE 164
           R+        + R +      R+  F                 V + +R+ D      ++
Sbjct: 114 RKHRILPADRFHRPQSSLFAARVYGFGHHSPSNDYKLLSITYFVDLQKRTFD------SQ 167

Query: 165 VKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRH--DFILALDLSDEA 222
           V++Y+L  +SWK +  +P       + GV+ SGSLHW+V  +   H  D I++ DL+ E 
Sbjct: 168 VQLYTLKSDSWKNLPSMPYALCCARTMGVFVSGSLHWLVTRKLQPHEPDLIVSFDLTRET 227

Query: 223 YKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSW 282
           + E+PLP  V  +   +V       L  GCLC+V + G G+      VWVM  YG ++SW
Sbjct: 228 FHEVPLPVTVNGDFDMQV------ALLGGCLCVVEHRGTGF-----DVWVMRVYGSRNSW 276

Query: 283 TKLFSILEEQ 292
            KLF++LE  
Sbjct: 277 EKLFTLLENN 286

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532341|ref|XP_003534732.1| PREDICTED: F-box protein CPR30-like [Glycine max]

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 142/306 (46%), Gaps = 29/306 (9%)

Query: 5   DPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARDRSIITVGLG 64
           D LP  ++ DILSRL  K LLR R  SK+W+ LID   F  + LSR+ +   S  T+ L 
Sbjct: 3   DHLPREVVTDILSRLPAKSLLRFRSTSKSWKSLIDSQHFNSVHLSRSLSLT-SNTTLILR 61

Query: 65  STDTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLCIATNRLPQTLAIWT-HLRE 123
               LY+  +        L+HP M     I ++G CNGLLCI+   +   +A W   LR+
Sbjct: 62  LDSDLYQTNFPTLDPPLFLNHPLMCYSNNITLLGSCNGLLCISN--VADDIAFWNPSLRQ 119

Query: 124 -----STAFYRRQRLP---WIPKRLVAFFMG-------LVRIARRSGDACFGGAAEVKVY 168
                S    RR+  P       R+  F          LVRI+           ++VK+Y
Sbjct: 120 HRILPSLPLPRRRLHPDTTLFAARVYGFGFDHTSPDYKLVRISYFVDLQDRSFDSQVKLY 179

Query: 169 SLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVM--AEYGRHDFILALDLSDEAYKEL 226
           +L  N+WK +  +P       + GV+   SLHW+V    E  + D I+A DL+ E + EL
Sbjct: 180 TLRANAWKTLPSMPYALCCARTMGVFVGNSLHWVVTRKLEPDQPDLIVAFDLTHEIFTEL 239

Query: 227 PLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLF 286
           PLP    +  G  +     G      LC+  N+          VWVM EY   DSW KLF
Sbjct: 240 PLPDTGGVGGGFEIDVALLG----DSLCMTVNFHNSKM----DVWVMREYNRGDSWCKLF 291

Query: 287 SILEEQ 292
           ++ E +
Sbjct: 292 TLEESR 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806236|ref|NP_001241466.1| uncharacterized protein LOC100815072 [Glycine max] gi|255637050|gb|ACU18857.1| unknown [Glycine max]

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 153/331 (46%), Gaps = 41/331 (12%)

Query: 1   MDDRDPLPL---HIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQ----- 52
           M +  PLP     ++ +ILSRL VK LL+ RCV K+W  LI  P F+K  L  +      
Sbjct: 40  MSESLPLPFLPDELVVEILSRLPVKSLLQFRCVCKSWMSLISDPYFMKKHLHLSSRCTHF 99

Query: 53  ARDRSIITVGLG-------STDTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLC 105
              R I++           S  +L+       C    L++P  +  +   +VG CNGLLC
Sbjct: 100 THHRIILSATTAEFHLKSCSLSSLFNNPSSTVC--DDLNYPVKNKFRHDGIVGSCNGLLC 157

Query: 106 IATNRLPQTLAIWTHLRESTAFYRRQRLPWIPKRLVAFFMGLVRIARRSGD-ACFGGAAE 164
            A       + +W      +         W P    AF +G   +       A F   +E
Sbjct: 158 FAIKG--DCVLLWNPSIRVSKKSPPLGNNWRPGCFTAFGLGYDHVNEDYKVVAVFCDPSE 215

Query: 165 ------VKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHDF--ILAL 216
                 VKVYS+A NSW++IQD P  ++   + G + SG+L+W      G   F  I++L
Sbjct: 216 YFIECKVKVYSMATNSWRKIQDFPHGFLPFQNSGKFVSGTLNWAANHSIGPSSFWVIVSL 275

Query: 217 DLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEY 276
           DL  E Y+E  + PP   +  C   +   GVL  GCLC+  +Y   +      VW+M +Y
Sbjct: 276 DLHKETYRE--VLPPDYEKEDCSTPS--LGVL-QGCLCMNYDYKKTHFV----VWMMKDY 326

Query: 277 GVKDSWTKLFSILEEQVISPSPEFYDYSLPF 307
           GV++SW KL SI       P+PE + YS P+
Sbjct: 327 GVRESWVKLVSI----PYVPNPEDFSYSGPY 353

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555728|ref|XP_003546182.1| PREDICTED: F-box protein CPR30-like [Glycine max]

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 150/310 (48%), Gaps = 38/310 (12%)

Query: 5   DPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARDRSIITVGLG 64
           D LP  ++ +ILSRL V+ LLR R  SK+W+ LID      L L+R+     S  ++ L 
Sbjct: 3   DHLPREVLTEILSRLPVRSLLRFRSTSKSWKSLIDSQHLNWLHLTRSLTLT-SNTSLILR 61

Query: 65  STDTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLCIATNRLPQTLAIWTHLRES 124
               LY+  +        L+HP M     I ++G CNGLLCI+   +   +A W     +
Sbjct: 62  VDSDLYQTNFPTLDPPVSLNHPLMCYSNSITLLGSCNGLLCISN--VADDIAFW-----N 114

Query: 125 TAFYRRQRLPWIP-------------KRLVAFFM-------GLVRIARRSGDACFGGAAE 164
            +  + + LP++P              R+  F          LVRI+           ++
Sbjct: 115 PSLRQHRILPYLPVPRRRHPDTTLFAARVCGFGFDHKTRDYKLVRISYFVDLHDRSFDSQ 174

Query: 165 VKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVM--AEYGRHDFILALDLSDEA 222
           VK+Y+L  N+WK +  +P       + GV+   SLHW+V    E  + D I+A DL+ + 
Sbjct: 175 VKLYTLRANAWKTLPSLPYALCCARTMGVFVGNSLHWVVTRKLEPDQPDLIIAFDLTHDI 234

Query: 223 YKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSW 282
           ++ELPLP    ++ G  +     G    G LC+  N+   ++T +  VWVM EY  +DSW
Sbjct: 235 FRELPLPDTGGVDGGFEIDLALLG----GSLCMTVNF---HKTRID-VWVMREYNRRDSW 286

Query: 283 TKLFSILEEQ 292
            K+F++ E +
Sbjct: 287 CKVFTLEESR 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480485|ref|XP_003610528.1| F-box family protein [Medicago truncatula] gi|355511583|gb|AES92725.1| F-box family protein [Medicago truncatula]

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 104/310 (33%), Positives = 142/310 (45%), Gaps = 52/310 (16%)

Query: 7   LPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARDRSIITVGLGST 66
           LP  +  +ILSR+  K LLRLR   K WR+LID  DFI L LS+  +RD  II   L   
Sbjct: 4   LPTEVTTEILSRVPAKPLLRLRSTCKWWRNLIDSTDFIFLHLSK--SRDSVII---LRQH 58

Query: 67  DTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLCIATNRLPQTLAIWT------H 120
             LYE    +     +LDHP M     I+V+G CNGLLCI    +   +A W        
Sbjct: 59  SRLYELDLNSMDRVKELDHPLMCYSNRIKVLGSCNGLLCICN--IADDIAFWNPTIRKHR 116

Query: 121 LRESTAFYRRQ--RLPWIPKRLVAFFMG-----------------LVRIARRSGDACFGG 161
           +  S    R++      I   L A   G                  V +  RS D     
Sbjct: 117 IIPSEPLIRKETNENNTITTLLAAHVYGFGYDSATDDYKLVSISYFVDLHNRSFD----- 171

Query: 162 AAEVKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVM--AEYGRHDFILALDLS 219
            + VK+Y++  + WK +  +P       + GV+ SG+LHW+V    E    D I+A DL 
Sbjct: 172 -SHVKIYTMRTDVWKTLPSMPYALCCARTMGVFVSGALHWVVTRDLEPESRDLIVAFDLR 230

Query: 220 DEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGG-GYRTPLSHVWVMTEYGV 278
            E ++E+ LP  V  +    V       L  G LC++ N G  G+      VWVM EYG 
Sbjct: 231 FEVFREVALPGTVDGKFDMDV------ALLRGMLCIIENRGSDGF-----DVWVMREYGS 279

Query: 279 KDSWTKLFSI 288
            DSW K+F++
Sbjct: 280 HDSWCKMFTV 289

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447909|ref|XP_003594230.1| F-box protein [Medicago truncatula] gi|355483278|gb|AES64481.1| F-box protein [Medicago truncatula]

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/320 (31%), Positives = 147/320 (45%), Gaps = 39/320 (12%)

Query: 5   DPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARDRSIITVGLG 64
           D LP   + +I SRL VK LLR R  SK+ + +ID  +FI L   R  + +RS I + L 
Sbjct: 4   DRLPPDTLAEIFSRLPVKSLLRFRSTSKSLKSIIDSHNFINLH--RKNSLNRSFI-LRLR 60

Query: 65  STDTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLCIATNRLP-------QTLAI 117
           S     E+ + N   A  L+HP+  +   I ++G CNGLL ++   +          + I
Sbjct: 61  SNIYQIEDDFSNLTTAVPLNHPFTRNSTNIALIGSCNGLLAVSNGEIALRHPNAANEITI 120

Query: 118 WTHLRESTAFYRRQRLPWIPKR---------LVAF----FMGLVRIARRSGDACFGGA-- 162
           W              LP  P+          +  F      G  +I R S          
Sbjct: 121 WNPNIRKHHIIPFLPLPITPRSPSDMNCSLCVHGFGFDPLTGDYKILRLSWLVSLQNPFY 180

Query: 163 -AEVKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEY-GRH-DFILALDLS 219
              V+++SL  NSWK I  +P   +   + GV    S+HWI+  +  G H   I+A +L+
Sbjct: 181 DPHVRLFSLKTNSWKIIPTMPYALVFAQTMGVLVEDSIHWIMAKKLDGLHPSLIVAFNLT 240

Query: 220 DEAYKELPLPPPVLLETGCRVRANYFGVLD----NGCLCLVSNYGGGYRTPLSHVWVMTE 275
            E + E+PLP  +  E    V +N    +D     GCLC+  NY     T    VWVM +
Sbjct: 241 LEIFNEVPLPDEIGEE---EVNSNDSVEIDVAALGGCLCMTVNY----ETTKIDVWVMKQ 293

Query: 276 YGVKDSWTKLFSILEEQVIS 295
           YG+KDSW KLF++++  V S
Sbjct: 294 YGLKDSWCKLFTMMKSCVTS 313

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555602|ref|XP_003546119.1| PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max]

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 151/331 (45%), Gaps = 42/331 (12%)

Query: 1   MDDRDPLPL---HIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQL-----SRNQ 52
           M +  PLP     ++ +ILSRL VK LL+ RCV K+W  LI  P F+K  L     S + 
Sbjct: 40  MSESLPLPFLPDELVVEILSRLPVKSLLQFRCVCKSWMSLIYDPYFMKKHLHLSSRSTHF 99

Query: 53  ARDRSIITVGLG-------STDTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLC 105
              R I++           S  +L+        +  +L++P  +  +   +VG CNGLLC
Sbjct: 100 THHRIILSATTAEFHLKSCSLSSLFNNL---STVCDELNYPVKNKFRHDGIVGSCNGLLC 156

Query: 106 IATNRLPQTLAIWTHLRESTAFYRRQRLPWIPKRLVAFFMGLVRIARRSG-DACFGGAAE 164
            A       + +W      +         W P    AF +G   +       A F   +E
Sbjct: 157 FAIKG--DCVLLWNPSIRVSKKSPPLGNNWRPGCFTAFGLGYDHVNEDYKVVAVFCDPSE 214

Query: 165 ------VKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHDF--ILAL 216
                 VKVYS+A NSW++IQD P  +    + G + SG+L+W      G      I++L
Sbjct: 215 YFIECKVKVYSMATNSWRKIQDFPHGFSPFQNSGKFVSGTLNWAANHSIGSSSLWVIVSL 274

Query: 217 DLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEY 276
           DL  E Y+E  + PP   +  C       GVL  GCLC+  +Y   +      VW+M +Y
Sbjct: 275 DLHKETYRE--VLPPDYEKEDCSTPG--LGVLQ-GCLCMNYDYKKTHFV----VWMMKDY 325

Query: 277 GVKDSWTKLFSILEEQVISPSPEFYDYSLPF 307
           G ++SW KL SI       P+PE + YS P+
Sbjct: 326 GARESWVKLVSI----PYVPNPENFSYSGPY 352

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
TAIR|locus:2135615	413	CPR1 "AT4G12560" [Arabidopsis	0.360	0.285	0.379	9.1e-23
TAIR|locus:2076196	364	AT3G23880 "AT3G23880" [Arabido	0.351	0.315	0.307	6.4e-13
TAIR|locus:2082410	427	AT3G06240 "AT3G06240" [Arabido	0.553	0.423	0.261	8.1e-13
TAIR|locus:2127465	402	AT4G22390 "AT4G22390" [Arabido	0.831	0.676	0.287	5.9e-12
TAIR|locus:2077452	417	AT3G07870 "AT3G07870" [Arabido	0.314	0.247	0.338	4.4e-11
TAIR|locus:2094947	360	AT3G16210 "AT3G16210" [Arabido	0.318	0.288	0.356	8.7e-11
TAIR|locus:2006902	441	AT1G33530 "AT1G33530" [Arabido	0.813	0.603	0.252	3.7e-09
TAIR|locus:2086243	362	AT3G23260 "AT3G23260" [Arabido	0.859	0.776	0.243	5.3e-09
TAIR|locus:2142539	445	AT5G10340 "AT5G10340" [Arabido	0.342	0.251	0.25	5.3e-08
TAIR|locus:2202099	312	AT1G11270 "AT1G11270" [Arabido	0.639	0.669	0.246	1.2e-07

TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 9.1e-23, Sum P(2) = 9.1e-23
 Identities = 52/137 (37%), Positives = 71/137 (51%)

Query:   164 EVKVYSLARNSWKRIQDIPPC--------Y--IARDSPGVYASGSLHWIVMAEYGRHDF- 212
             EVKV+SL +NSWKRI+ +           Y  + R   GV A  SLHW++    G   F 
Sbjct:   174 EVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFN 233

Query:   213 -ILALDLSDEAYKEXXXXXXXXXETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVW 271
              I+  DL+ E + E              ++ +  GVLD GCLCL+ NY   Y      VW
Sbjct:   234 LIVRFDLALEEF-EIVRFPEAVANGNVDIQMD-IGVLD-GCLCLMCNYDQSY----VDVW 286

Query:   272 VMTEYGVKDSWTKLFSI 288
             +M EY V+DSWTK+F++
Sbjct:   287 MMKEYNVRDSWTKVFTV 303

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0042177 "negative regulation of protein catabolic process" evidence=IMP

TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
 Identities = 39/127 (30%), Positives = 57/127 (44%)

Query:   164 EVKVYSLARNSWKRIQDIPPCYIARDSP--GVYASGSLHWIVMAEYGRHDFILALDLSDE 221
             E K+YS  +  W+     P   +  D    G+Y +G+L+W   +       I++ D+S +
Sbjct:   185 ETKIYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLNWAATSSSSSWT-IISYDMSRD 243

Query:   222 AYKEXXXXXXXXXETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDS 281
              +KE           GC       G L  GCL +V  Y  G     + VWVM E+G   S
Sbjct:   244 EFKELPGPVCCGR--GCFTMT--LGDL-RGCLSMVC-YCKGAN---ADVWVMKEFGEVYS 294

Query:   282 WTKLFSI 288
             W+KL SI
Sbjct:   295 WSKLLSI 301

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 8.1e-13, Sum P(2) = 8.1e-13
 Identities = 55/210 (26%), Positives = 90/210 (42%)

Query:    91 KQWIEVVGCCNGLLCIATNR------LPQT---LAIWTHLRESTAFYRRQRLPWIPKRLV 141
             + W+E+VG  NGL+CI+          P T     +  + R  +  Y R           
Sbjct:   160 RNWVEIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFD 219

Query:   142 AFF--MGLVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIARD---SPGVYAS 196
                    LV++   S D       +  VYSL  +SW+RI ++   Y   D   + GV+ +
Sbjct:   220 GLTDDYKLVKLVATSEDIL-----DASVYSLKADSWRRICNLN--YEHNDGSYTSGVHFN 272

Query:   197 GSLHWIVMAEYGRHDFILALDLSDEAYKEXXXXXXXXXETGCRVRANYFGVLD-NGCLCL 255
             G++HW+          ++A D+  E ++E            C  R + F V   NG LC+
Sbjct:   273 GAIHWVFTESRHNQRVVVAFDIQTEEFREMPVPDEAED---CSHRFSNFVVGSLNGRLCV 329

Query:   256 VSNYGGGYRTPLSHVWVMTEYGVKDSWTKL 285
             V++    Y      +WVM+EYG   SW+++
Sbjct:   330 VNSC---YDVH-DDIWVMSEYGEAKSWSRI 355

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2127465 AT4G22390 "AT4G22390" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 5.9e-12, P = 5.9e-12
 Identities = 94/327 (28%), Positives = 141/327 (43%)

Query:     8 PLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRN-QARDRSIITV-GLGS 65
             P  +I+++  RL    L++ R +SK    LID P+F+   L R  +  +  +I + G   
Sbjct:     5 PTDLINEMFLRLRATTLVKCRVLSKPCFSLIDSPEFVSSHLRRRLETGEHLMILLRGPRL 64

Query:    66 TDTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGL--LCIATNRL----PQTLAIWT 119
               T+  +  EN    + + HP + +  + EV G  NG+  LC +   L    P T  I  
Sbjct:    65 LRTVELDSPEN---VSDIPHP-LQAGGFTEVFGSFNGVIGLCNSPVDLAIFNPSTRKIHR 120

Query:   120 HLRESTAFYRRQRLPWIPKRLVAFFMG---------LVRIAR---RSGDACFGGAAEVKV 167
                E   F  R     I +  V + +G         +VRI +   + G   F    EVKV
Sbjct:   121 LPIEPIDFPERD----ITREYVFYGLGYDSVGDDFKVVRIVQCKLKEGKKKFPCPVEVKV 176

Query:   168 YSLARNSWKRI------QDIPPCY----IARDSPGVYASGSLHWIVMAEYGRHDF--ILA 215
             +SL +NSWKR+      Q +   Y    + R   GV  +  LHWI+    G   F  I+ 
Sbjct:   177 FSLKKNSWKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWILPRRQGVIAFNAIIK 236

Query:   216 LDLSDEAYKEXXXXXXXXXETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHV--WVM 273
              DL+ +             E    +     GVLD GC+CL+      Y    SHV  WV+
Sbjct:   237 YDLASDDIGVLSFPQELYIEDNMDI-----GVLD-GCVCLMC-----Y-DEYSHVDVWVL 284

Query:   274 TEYGVKDSWTKLFSILEEQVISPSPEF 300
              EY    SWTKL+ + + + +  S EF
Sbjct:   285 KEYEDYKSWTKLYRVPKPESVE-SVEF 310

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2077452 AT3G07870 "AT3G07870" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
 Identities = 40/118 (33%), Positives = 56/118 (47%)

Query:   174 SWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHDF-ILALDLSDEAYKEXXXXXXX 232
             SW+ +   P  ++ R S  +  +G LH++        D   ++ DL DE +KE       
Sbjct:   223 SWRSLGKAPYKFVKRSSEAL-VNGRLHFVTRPRRHVPDRKFVSFDLEDEEFKEIPKP--- 278

Query:   233 XXETGCRVRANYFGVLDNGCLCLV--SNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSI 288
               + G   R N+  V   GCLC V   NYG      L  +WVM  YGVK+SW K +SI
Sbjct:   279 --DCGGLNRTNHRLVNLKGCLCAVVYGNYG-----KLD-IWVMKTYGVKESWGKEYSI 328

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2094947 AT3G16210 "AT3G16210" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
 Identities = 41/115 (35%), Positives = 54/115 (46%)

Query:     7 LPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARDRSIITVGLGST 66
             LP  +  +IL RL +K L R RCV KTWRDLI+ P F +     + A+  S         
Sbjct:     5 LPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFTETYRDMSPAKFVSFYDKNFYML 64

Query:    67 DTLYEEKYENGCIATKLDHPWMDSKQWIEVVGC---CNGLLCIATNRLPQTLAIW 118
             D   E K+    I  KLD P +D    I+   C   C+G LC+       TL +W
Sbjct:    65 DV--EGKHP--VITNKLDFP-LDQSM-IDESTCVLHCDGTLCVTLKN--HTLMVW 111

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2006902 AT1G33530 "AT1G33530" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 3.7e-09, P = 3.7e-09
 Identities = 74/293 (25%), Positives = 130/293 (44%)

Query:     7 LPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIK--LQLSRNQARDRSI-ITVGL 63
             LP  ++++IL RL VK L+RL+ +SK W+ LI+     +  L+L   +   + I ITV  
Sbjct:    97 LPDVLVEEILQRLPVKYLVRLKSISKGWKSLIESDHLAEKHLRLLEKKYGLKEIKITVER 156

Query:    64 GSTDTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLCIATNRLPQTLAIWTHLRE 123
              ++ ++  + +        ++    DS   + V G CNGL+C+    L  ++ I+  L  
Sbjct:   157 STSKSICIKFFSRRSGMNAINS---DSDDLLRVPGSCNGLVCVY--EL-DSVYIYL-LNP 209

Query:   124 STAFYRRQRLPWIPKRLVAFFMGLVRIARRSGDACFG-GAAEVKVYSLARNSWK-RIQDI 181
              T   R    P   K  V F + +V    +     +G       V+ L  N W+ R +  
Sbjct:   210 MTGVTRTLTPPRGTKLSVGFGIDVVTGTYKVM-VLYGFDRVGTVVFDLDTNKWRQRYKTA 268

Query:   182 PP----CYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKEXXXXXXXXXETG 237
              P    C    +   V+ +GSL W++ +++     IL +DL  E ++          +  
Sbjct:   269 GPMPLSCIPTPERNPVFVNGSLFWLLASDFSE---ILVMDLHTEKFR-TLSQPNDMDDVD 324

Query:   238 CRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKL-FSIL 289
                   Y   L++  LC VSN   G     S+VWV+ +  + + W +  F++L
Sbjct:   325 VSSGYIYMWSLEDR-LC-VSNVRQGLH---SYVWVLVQDELSEKWERTRFNLL 372

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2086243 AT3G23260 "AT3G23260" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 5.3e-09, P = 5.3e-09
 Identities = 76/312 (24%), Positives = 120/312 (38%)

Query:     7 LPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARDRSIIT-----V 61
             LP+ + ++ILSR+  K L RLR  SK W  L     F K   S N  ++  II      V
Sbjct:     6 LPVELQEEILSRVPAKYLARLRSTSKQWNALSKTGSFAKKH-SANATKEPLIIMLKDSRV 64

Query:    62 GLGSTDTLYEEKYENGCIATKLDHPWMDSKQWIEVVGCCNGLLCIATNRLPQTLAIWTH- 120
              L S +      + N   + +L          I  V  C+GLL + + +   TL +W   
Sbjct:    65 YLASVNL--HGVHNNVAQSFELGSRLYLKDPHISNVFHCDGLLLLCSIK-ENTLEVWNPC 121

Query:   121 ------LRESTAFYRRQ---RLPWIPKRLVAFFMGLVRIARRSGDACFGGAAEVKVYSLA 171
                   ++   ++Y+      L +  K     +  L  I++      F    E ++Y   
Sbjct:   122 SGEAKLIKPRHSYYKESDFYALGYDNKSSCKKYKVLRVISQVHVQGDF--KIEYEIYDFT 179

Query:   172 RNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKEXXXXXX 231
              +SW R+         R    V   GS +W+V   Y  + + L+ D S E ++       
Sbjct:   180 NDSW-RVHGATTELSIRQKHPVSVKGSTYWVVRNRYFPYKYFLSFDFSTERFQSLSLPQP 238

Query:   232 XXXETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSILEE 291
                            V+    LCL   Y     +   +VWV T  G   SW+K  +I   
Sbjct:   239 FPY------LVTDLSVVREEQLCLFGYYNWSTTSEDLNVWVTTSLGSVVSWSKFLTI--- 289

Query:   292 QVISPSPEFYDY 303
             Q+I P  + +DY
Sbjct:   290 QIIKPRVDMFDY 301

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2142539 AT5G10340 "AT5G10340" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
 Identities = 31/124 (25%), Positives = 51/124 (41%)

Query:   166 KVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKE 225
             +V+  A N+W+ +    P  I      VY  GSLHW     +     +L+LDL  E ++ 
Sbjct:   262 EVFDFATNAWRYVFPASPHLILHTQDPVYVDGSLHWFTALSHEGETMVLSLDLHSETFQV 321

Query:   226 XXXXXXXXXETGCRVRANYFGVLDN-GCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTK 284
                           V   Y+ V+ N G    VS      + P   +W + +   K +W +
Sbjct:   322 ISKAPFL------NVSDEYYIVMCNLGDRLCVSEQ----KWPNQVIWSLDDSDHK-TWKQ 370

Query:   285 LFSI 288
             ++SI
Sbjct:   371 IYSI 374

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2202099 AT1G11270 "AT1G11270" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 59/239 (24%), Positives = 101/239 (42%)

Query:     7 LPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRN-QARDRSIITVGLGS 65
             LP  ++  IL RL V+ LLR +CVS  W+  I+   F + QL R  ++R   ++ V    
Sbjct:    35 LPHDVVGLILERLPVESLLRFKCVSNQWKSTIESQCFQERQLIRRMESRGPDVLVVSFAD 94

Query:    66 TDTLYEEKYENGC-IATKLDHPWMDSKQWIEVVGCCNGLLCI----ATNRLPQTLAIW-- 118
              +  Y  K   G  I +    P + +   +   G C GL+CI    + N +      W  
Sbjct:    95 DEDKYGRKAVFGSSIVSTFRFPTLHT---LICYGSCEGLICIYCVYSPNIVVNPATKWHR 151

Query:   119 ----THLRE--STAFYRRQR-LPWIPKRLVAF----FMGLVRIA--RRSGDACFGGAAEV 165
                 ++L++     F +++   P  PK  +AF      G  +      S +         
Sbjct:   152 SCPLSNLQQFLDDKFEKKEYDFP-TPK--LAFGKDKLNGTYKQVWLYNSSEFRLDDVTTC 208

Query:   166 KVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYK 224
             +V+  + N+W+ +    P  I      VY+ GS+HW+     G+   IL+  L  E ++
Sbjct:   209 EVFDFSNNAWRYVHPASPYRINDYQDPVYSDGSVHWLTE---GKESKILSFHLHTETFQ 264

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010286 "heat acclimation" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_88000019 hypothetical protein (374 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	327
TIGR01640	230	TIGR01640, F_box_assoc_1, F-box protein interactio	3e-16
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	7e-09
pfam00646	48	pfam00646, F-box, F-box domain	3e-08
pfam12937	47	pfam12937, F-box-like, F-box-like	7e-06

>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain

 Score = 76.2 bits (188), Expect = 3e-16
 Identities = 51/219 (23%), Positives = 86/219 (39%), Gaps = 25/219 (11%)

Query: 97  VGCCNGLLCIATNRLPQTLAIWT-HLRESTAFYRRQRLPWIPKRLVAFF-----MGLVRI 150
           V  C+GL+C       + L +W     +S      +      +    F          ++
Sbjct: 1   VVPCDGLICF---SYGKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKV 57

Query: 151 ARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRH 210
              S  +     +E +VY+L  NSW+ I+  PP +    S GV  +G L+++        
Sbjct: 58  LCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP-LKSRGVCINGVLYYLAYTLKTNP 116

Query: 211 -DFILALDLSDEAYKE-LPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLS 268
             FI++ D+S E +KE +PLP             NY      G L ++            
Sbjct: 117 DYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINY-----KGKLAVLKQKKDTNNF--- 168

Query: 269 HVWVMTEYGVKDSWTKLFSILEEQVISPSPEFYDYSLPF 307
            +WV+ + G K  W+KLF++     I P P+  D +   
Sbjct: 169 DLWVLNDAG-KQEWSKLFTVP----IPPLPDLVDDNFLS 202

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 50.5 bits (122), Expect = 7e-09
 Identities = 22/39 (56%), Positives = 27/39 (69%)

Query: 7  LPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIK 45
          LP  I+++ILS+L  K LLRLR VS+ WR LID  DF  
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWF 39

Length = 41

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 49.1 bits (118), Expect = 3e-08
 Identities = 21/43 (48%), Positives = 26/43 (60%)

Query: 7  LPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLS 49
          LP  ++ +ILSRL  K LLRL  VSK WR L+D     K +L 
Sbjct: 6  LPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 42.1 bits (100), Expect = 7e-06
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 7  LPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGP 41
          LP  I+  I S L  + LLRL  V + WR+L    
Sbjct: 4  LPDEILLQIFSYLDPRDLLRLALVCRRWRELASDD 38

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	327
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.97
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	99.68
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	99.65
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	99.2
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.01
PHA02713	557	hypothetical protein; Provisional	98.88
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.82
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.77
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.64
PHA03098	534	kelch-like protein; Provisional	98.6
PHA02713	557	hypothetical protein; Provisional	98.49
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.49
PHA02790	480	Kelch-like protein; Provisional	98.48
PHA02790	480	Kelch-like protein; Provisional	98.45
PHA03098	534	kelch-like protein; Provisional	98.28
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	98.21
PLN02153	341	epithiospecifier protein	98.21
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	98.1
PLN02193	470	nitrile-specifier protein	98.05
PLN02153	341	epithiospecifier protein	98.01
PLN02193	470	nitrile-specifier protein	98.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	97.98
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	97.94
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	97.92
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	97.68
KOG4693	392	consensus Uncharacterized conserved protein, conta	97.64
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.45
KOG2997	366	consensus F-box protein FBX9 [General function pre	96.62
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	96.58
PF07762	131	DUF1618: Protein of unknown function (DUF1618); In	96.07
KOG4693	392	consensus Uncharacterized conserved protein, conta	95.39
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	95.1
KOG1230	521	consensus Protein containing repeated kelch motifs	94.77
PF13964	50	Kelch_6: Kelch motif	94.65
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	94.49
KOG1230	521	consensus Protein containing repeated kelch motifs	93.91
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	93.1
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	92.62
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	92.51
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	90.4
PF13964	50	Kelch_6: Kelch motif	89.83
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	89.81
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	87.8
smart00612	47	Kelch Kelch domain.	86.63
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	83.91
KOG4341	483	consensus F-box protein containing LRR [General fu	83.65
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	82.15

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.97  E-value=2.3e-29  Score=218.30  Aligned_cols=206  Identities=24%  Similarity=0.353  Sum_probs=142.1

Q ss_pred             EeccCCcEEeeecCCCCEEEEEcCCccccceeeccccCCCCCC-----C--ceEEEE-------EEEEEEEeCCCCCCCc
Q 038993           97 VGCCNGLLCIATNRLPQTLAIWTHLRESTAFYRRQRLPWIPKR-----L--VAFFMG-------LVRIARRSGDACFGGA  162 (327)
Q Consensus        97 ~~sc~GLlcl~~~~~~~~~~V~N~~~P~T~~~~~~~LP~~~~~-----~--~~~gfg-------vv~v~~~~~~~~~~~~  162 (327)
                      ++|||||||+..   ...++|||   |+||+++  .||+++..     .  ..+||+       ||++....   .....
T Consensus         1 ~~sCnGLlc~~~---~~~~~V~N---P~T~~~~--~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~---~~~~~   69 (230)
T TIGR01640         1 VVPCDGLICFSY---GKRLVVWN---PSTGQSR--WLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS---GNRNQ   69 (230)
T ss_pred             CcccceEEEEec---CCcEEEEC---CCCCCEE--ecCCCCCcccccccceEEEeecccCCcEEEEEEEeec---CCCCC
Confidence            479999999886   37899999   9999999  99877642     1  124443       55554321   12246


Q ss_pred             cEEEEEEcCCCceEEcCCCCCceecCCCCeeeeCCcEEEEEeecCCCc-cEEEEEeCCCceee-eecCCCCCCcCCccee
Q 038993          163 AEVKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRH-DFILALDLSDEAYK-ELPLPPPVLLETGCRV  240 (327)
Q Consensus       163 ~~~~Vys~~~~~Wr~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~-~~il~fD~~~e~~~-~i~lP~~~~~~~~~~~  240 (327)
                      ..++||++++++||.+...+.... ....+|++||++||++....... ..|++||+++|+|+ .+++|.... ......
T Consensus        70 ~~~~Vys~~~~~Wr~~~~~~~~~~-~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~-~~~~~~  147 (230)
T TIGR01640        70 SEHQVYTLGSNSWRTIECSPPHHP-LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNS-DSVDYL  147 (230)
T ss_pred             ccEEEEEeCCCCccccccCCCCcc-ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCcccc-ccccce
Confidence            789999999999999975443322 22349999999999997653122 37999999999999 589987542 111234


Q ss_pred             eccEEEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCCc------ccCCCcccccccCC-C
Q 038993          241 RANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSILEEQVISPSP------EFYDYSLPFESLEP-P  313 (327)
Q Consensus       241 ~~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~-~  313 (327)
                         .|++++ |+||++.....+   ..++||+|++++. ++|+|+++|+.........      ...+..+.+...+. +
T Consensus       148 ---~L~~~~-G~L~~v~~~~~~---~~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~  219 (230)
T TIGR01640       148 ---SLINYK-GKLAVLKQKKDT---NNFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENP  219 (230)
T ss_pred             ---EEEEEC-CEEEEEEecCCC---CcEEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCc
Confidence               899999 999999886542   2699999999875 5699999998743332211      11222233332222 3


Q ss_pred             ceEEEEecCC
Q 038993          314 SLLRGWHPTS  323 (327)
Q Consensus       314 ~~~~~~~~~~  323 (327)
                      ..+++|||.+
T Consensus       220 ~~~~~y~~~~  229 (230)
T TIGR01640       220 FYIFYYNVGE  229 (230)
T ss_pred             eEEEEEeccC
Confidence            4488888875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=99.68  E-value=1.4e-15  Score=124.72  Aligned_cols=100  Identities=38%  Similarity=0.700  Sum_probs=76.4

Q ss_pred             eeeeCCcEEEEEeecCCCc-cEEEEEeCCCcee-eeecCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCCCeEE
Q 038993          192 GVYASGSLHWIVMAEYGRH-DFILALDLSDEAY-KELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSH  269 (327)
Q Consensus       192 ~v~~~G~lywl~~~~~~~~-~~il~fD~~~e~~-~~i~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~~l~  269 (327)
                      +|++||++||++....... ..|++||+++|+| +.+++|.... ......   .|.++.+|+||++.....+   ..++
T Consensus         1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~-~~~~~~---~L~~v~~~~L~~~~~~~~~---~~~~   73 (164)
T PF07734_consen    1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCND-DDDDSV---SLSVVRGDCLCVLYQCDET---SKIE   73 (164)
T ss_pred             CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccC-ccCCEE---EEEEecCCEEEEEEeccCC---ccEE
Confidence            5899999999998875222 2899999999999 8889998764 122234   7766654899999764442   3799


Q ss_pred             EEEEeeCCC-CCCeEEEEEEcCCCCCCCCc
Q 038993          270 VWVMTEYGV-KDSWTKLFSILEEQVISPSP  298 (327)
Q Consensus       270 iW~l~~~~~-~~~W~~~~~i~~~~~~~~~~  298 (327)
                      ||+|+++|. .++|+|.++|++........
T Consensus        74 IWvm~~~~~~~~SWtK~~~i~~~~~~~~~~  103 (164)
T PF07734_consen   74 IWVMKKYGYGKESWTKLFTIDLPPLPSLFF  103 (164)
T ss_pred             EEEEeeeccCcceEEEEEEEecCCCCCccc
Confidence            999998753 68999999999877666543

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=99.65  E-value=3.5e-15  Score=117.36  Aligned_cols=94  Identities=26%  Similarity=0.535  Sum_probs=73.4

Q ss_pred             eeeeCCcEEEEEeecCCCccEEEEEeCCCceeeeecCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCCCeEEEE
Q 038993          192 GVYASGSLHWIVMAEYGRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVW  271 (327)
Q Consensus       192 ~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW  271 (327)
                      |+++||.+||++.........|++||+++|+|+.|++|.... ......   .|++++ |+||++....... ...++||
T Consensus         1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~-~~~~~~---~L~~~~-G~L~~v~~~~~~~-~~~~~iW   74 (129)
T PF08268_consen    1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPY-SSDCSS---TLIEYK-GKLALVSYNDQGE-PDSIDIW   74 (129)
T ss_pred             CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeec-cccCcc---EEEEeC-CeEEEEEecCCCC-cceEEEE
Confidence            589999999999984455679999999999999999992221 222344   899999 9999998876531 3479999


Q ss_pred             EEeeCCCCCCeEEEEEEcCCC
Q 038993          272 VMTEYGVKDSWTKLFSILEEQ  292 (327)
Q Consensus       272 ~l~~~~~~~~W~~~~~i~~~~  292 (327)
                      +|+|++ +++|+|++.+-...
T Consensus        75 vLeD~~-k~~Wsk~~~~lp~~   94 (129)
T PF08268_consen   75 VLEDYE-KQEWSKKHIVLPPS   94 (129)
T ss_pred             Eeeccc-cceEEEEEEECChH
Confidence            999987 58999887754443

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=99.20  E-value=3.6e-09  Score=96.06  Aligned_cols=256  Identities=13%  Similarity=0.093  Sum_probs=131.0

Q ss_pred             CCCCCCCcHHHHHHHHhcCC-cchhhhheeccccchhhcCChhhHHHHhhccCCCCceEEEeec-CCCCeeEecccCCCc
Q 038993            1 MDDRDPLPLHIIDDILSRLH-VKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARDRSIITVGL-GSTDTLYEEKYENGC   78 (327)
Q Consensus         1 m~~~~~LP~Dll~eIL~rLP-~ksl~r~r~VcK~W~~li~~~~F~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~   78 (327)
                      |++++.||+||+..|..||| .-+++|||+|||+||+.+....   +  .....+.+.+++... +.. .+.+.+.... 
T Consensus         1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-   73 (373)
T PLN03215          1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---K--KNPFRTRPLILFNPINPSE-TLTDDRSYIS-   73 (373)
T ss_pred             CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---c--cCCcccccccccCcccCCC-Cccccccccc-
Confidence            89999999999999999998 6699999999999999877421   0  000011122222110 000 0000000000 


Q ss_pred             ccccccCCCCCCCCceEE---EeccCCcEEeeecC-CCCEEEEEcCCccccceeeccccCCCCCC---C-------ce-E
Q 038993           79 IATKLDHPWMDSKQWIEV---VGCCNGLLCIATNR-LPQTLAIWTHLRESTAFYRRQRLPWIPKR---L-------VA-F  143 (327)
Q Consensus        79 ~~~~~~~p~~~~~~~~~~---~~sc~GLlcl~~~~-~~~~~~V~N~~~P~T~~~~~~~LP~~~~~---~-------~~-~  143 (327)
                         .....+.. ..-+++   .++..|.|...... ..+.+.+.|   |+++.-.  .+|+...+   +       .+ +
T Consensus        74 ---~~~~~ls~-~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~---PLsr~~~--~~~~~~lnll~f~v~ei~~~y~l  144 (373)
T PLN03215         74 ---RPGAFLSR-AAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLN---PLSRLPL--RHSSESVDLLEFTVSEIREAYQV  144 (373)
T ss_pred             ---cccceeee-eEEEEeecCCCCCCCcEEEEeccccCCccEecC---ccccCcc--CCCCccceeeeeEEEEccceEEE
Confidence               00000000 000111   13457888765432 457889999   9999988  88754333   1       01 0


Q ss_pred             -E----------EEEEEEEEEeCCCCCCCccEEEEEEcC------CCceEEcCCCCCceecCCCCeeeeCCcEEEEEeec
Q 038993          144 -F----------MGLVRIARRSGDACFGGAAEVKVYSLA------RNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAE  206 (327)
Q Consensus       144 -g----------fgvv~v~~~~~~~~~~~~~~~~Vys~~------~~~Wr~~~~~p~~~~~~~~~~v~~~G~lywl~~~~  206 (327)
                       +          |..+.++... ..+.....-+.|+.-+      .++|..++....    ....-++.+|.+|-+...+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l~~~~~----~~~DIi~~kGkfYAvD~~G  219 (373)
T PLN03215        145 LDWAKRRETRPGYQRSALVKVK-EGDNHRDGVLGIGRDGKINYWDGNVLKALKQMGY----HFSDIIVHKGQTYALDSIG  219 (373)
T ss_pred             EecccccccccceeEEEEEEee-cCCCcceEEEEEeecCcEeeecCCeeeEccCCCc----eeeEEEEECCEEEEEcCCC
Confidence             1          1101111111 1111111222333222      356776653221    1223688999999986544


Q ss_pred             CCCccEEEEEeCCCceeeeecC--CCCCCcCC-cceeeccEEEEeCCCcEEEEEecCCCc------------CCCeEEEE
Q 038993          207 YGRHDFILALDLSDEAYKELPL--PPPVLLET-GCRVRANYFGVLDNGCLCLVSNYGGGY------------RTPLSHVW  271 (327)
Q Consensus       207 ~~~~~~il~fD~~~e~~~~i~l--P~~~~~~~-~~~~~~~~l~~~~~g~L~~~~~~~~~~------------~~~~l~iW  271 (327)
                           .+.++|.+-+ -+.+..  ........ ....   .|+++. |.|.+|.......            ....++|+
T Consensus       220 -----~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~---yLVEs~-GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~Vf  289 (373)
T PLN03215        220 -----IVYWINSDLE-FSRFGTSLDENITDGCWTGDR---RFVECC-GELYIVERLPKESTWKRKADGFEYSRTVGFKVY  289 (373)
T ss_pred             -----eEEEEecCCc-eeeecceecccccCCcccCce---eEEEEC-CEEEEEEEEccCcccccccccccccceeEEEEE
Confidence                 4667774321 122211  11110000 1123   899999 9999998743210            13478999


Q ss_pred             EEeeCCCCCCeEEEEEEc
Q 038993          272 VMTEYGVKDSWTKLFSIL  289 (327)
Q Consensus       272 ~l~~~~~~~~W~~~~~i~  289 (327)
                      .++..  ..+|+++.+++
T Consensus       290 klD~~--~~~WveV~sLg  305 (373)
T PLN03215        290 KFDDE--LAKWMEVKTLG  305 (373)
T ss_pred             EEcCC--CCcEEEecccC
Confidence            99753  46899988875

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=99.01  E-value=1.5e-10  Score=73.96  Aligned_cols=44  Identities=30%  Similarity=0.510  Sum_probs=38.0

Q ss_pred             CCCCcHHHHHHHHhcCCcchhhhheeccccchhhcCChhhHHHH
Q 038993            4 RDPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQ   47 (327)
Q Consensus         4 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~~~   47 (327)
                      +..||+|++.+||..||++++.++.+|||+|++++.++.+.+..
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~   44 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRL   44 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhh
Confidence            56899999999999999999999999999999999988766553

>PHA02713 hypothetical protein; Provisional

Probab=98.88  E-value=1.7e-07  Score=91.43  Aligned_cols=188  Identities=10%  Similarity=0.090  Sum_probs=118.8

Q ss_pred             CEEEEEcCCccccceeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCCceec
Q 038993          113 QTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIA  187 (327)
Q Consensus       113 ~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~~~~~  187 (327)
                      ..+..+|   |.+.+|.  .+|+++..   .....++  +|.+.+.   ++......+++|+..+++|..++.+|.... 
T Consensus       320 ~~v~~Yd---~~~n~W~--~~~~m~~~R~~~~~~~~~g~IYviGG~---~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~-  390 (557)
T PHA02713        320 NKVYKIN---IENKIHV--ELPPMIKNRCRFSLAVIDDTIYAIGGQ---NGTNVERTIECYTMGDDKWKMLPDMPIALS-  390 (557)
T ss_pred             ceEEEEE---CCCCeEe--eCCCCcchhhceeEEEECCEEEEECCc---CCCCCCceEEEEECCCCeEEECCCCCcccc-
Confidence            4678999   9999999  99988754   1222232  6666542   222345679999999999999988775442 


Q ss_pred             CCCCeeeeCCcEEEEEeecCC-------------------CccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccEEEE
Q 038993          188 RDSPGVYASGSLHWIVMAEYG-------------------RHDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANYFGV  247 (327)
Q Consensus       188 ~~~~~v~~~G~lywl~~~~~~-------------------~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l~~  247 (327)
                       ....+.++|.+|.+++....                   ....+.+||+++++|+.+ ++|...     ...   .+++
T Consensus       391 -~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r-----~~~---~~~~  461 (557)
T PHA02713        391 -SYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT-----IRP---GVVS  461 (557)
T ss_pred             -cccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc-----ccC---cEEE
Confidence             23467889999999875421                   124689999999999987 444332     122   5678


Q ss_pred             eCCCcEEEEEecCCCcCCCeEEEEEEeeCCC-C-CCeEEEEEEcCCCCCCCCcccCCCcccccccCCCceEEEEecCC
Q 038993          248 LDNGCLCLVSNYGGGYRTPLSHVWVMTEYGV-K-DSWTKLFSILEEQVISPSPEFYDYSLPFESLEPPSLLRGWHPTS  323 (327)
Q Consensus       248 ~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~-~-~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (327)
                      ++ |+|++++...+..  ....  ..+-|.. . ++|+....++.+..........+.+..+-..+....+--|||++
T Consensus       462 ~~-~~IYv~GG~~~~~--~~~~--~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        462 HK-DDIYVVCDIKDEK--NVKT--CIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             EC-CEEEEEeCCCCCC--ccce--eEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCccc
Confidence            88 9999998754321  0111  1233332 2 47999887766554433344444444443333333455666654

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.82  E-value=7e-10  Score=71.17  Aligned_cols=45  Identities=47%  Similarity=0.710  Sum_probs=38.2

Q ss_pred             CCCCcHHHHHHHHhcCCcchhhhheeccccchhhcCChhhHHHHh
Q 038993            4 RDPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQL   48 (327)
Q Consensus         4 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~~~~   48 (327)
                      +..||+|++.+||.+||.+++++++.|||+|++++.++.+...+.
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~   47 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII   47 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence            457999999999999999999999999999999999998876653

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.77  E-value=2.1e-09  Score=66.32  Aligned_cols=39  Identities=56%  Similarity=0.880  Sum_probs=37.0

Q ss_pred             CcHHHHHHHHhcCCcchhhhheeccccchhhcCChhhHH
Q 038993            7 LPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIK   45 (327)
Q Consensus         7 LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~   45 (327)
                      ||+|++.+||.+|+++++.++++|||+|+.++.++.|..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~   39 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF   39 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            799999999999999999999999999999999988764

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.64  E-value=1.2e-06  Score=85.49  Aligned_cols=204  Identities=13%  Similarity=0.160  Sum_probs=128.4

Q ss_pred             EEeccCCcEEeeecC-----CCCEEEEEcCCccccceeeccccCCCCCCCceEEE---E--EEEEEEEeCCCCCCCccEE
Q 038993           96 VVGCCNGLLCIATNR-----LPQTLAIWTHLRESTAFYRRQRLPWIPKRLVAFFM---G--LVRIARRSGDACFGGAAEV  165 (327)
Q Consensus        96 ~~~sc~GLlcl~~~~-----~~~~~~V~N~~~P~T~~~~~~~LP~~~~~~~~~gf---g--vv~v~~~~~~~~~~~~~~~  165 (327)
                      -++..+|.|-.....     ....+..+|   |-+.+|.  .+|++......+|-   +  +|.+.++   ++......+
T Consensus       327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD---~~~~~W~--~~a~M~~~R~~~~v~~l~g~iYavGG~---dg~~~l~sv  398 (571)
T KOG4441|consen  327 GVAVLNGKLYVVGGYDSGSDRLSSVERYD---PRTNQWT--PVAPMNTKRSDFGVAVLDGKLYAVGGF---DGEKSLNSV  398 (571)
T ss_pred             cEEEECCEEEEEccccCCCcccceEEEec---CCCCcee--ccCCccCccccceeEEECCEEEEEecc---ccccccccE
Confidence            445556655443321     235689999   9999999  99998765111111   1  6666654   345667799


Q ss_pred             EEEEcCCCceEEcCCCCCceecCCCCeeeeCCcEEEEEeecC-C-CccEEEEEeCCCceeeee-cCCCCCCcCCcceeec
Q 038993          166 KVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEY-G-RHDFILALDLSDEAYKEL-PLPPPVLLETGCRVRA  242 (327)
Q Consensus       166 ~Vys~~~~~Wr~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~-~-~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~  242 (327)
                      |.|+..++.|..++.++...  .....+.++|.+|-+++... . ....+.+||+.+++|+.+ +++...     ...  
T Consensus       399 E~YDp~~~~W~~va~m~~~r--~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R-----~~~--  469 (571)
T KOG4441|consen  399 ECYDPVTNKWTPVAPMLTRR--SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR-----SGF--  469 (571)
T ss_pred             EEecCCCCcccccCCCCcce--eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc-----ccc--
Confidence            99999999999998777622  22336788999999998664 2 347899999999999987 444432     223  


Q ss_pred             cEEEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCC-CCCCeEEEEEEcCCCCCCCCcccCCCccc---ccccCCCceEEE
Q 038993          243 NYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYG-VKDSWTKLFSILEEQVISPSPEFYDYSLP---FESLEPPSLLRG  318 (327)
Q Consensus       243 ~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  318 (327)
                       .+++++ |+|++++..++......     .+-|. ....|+....+....-..-.....+....   +...+.-..+-.
T Consensus       470 -g~a~~~-~~iYvvGG~~~~~~~~~-----VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~  542 (571)
T KOG4441|consen  470 -GVAVLN-GKIYVVGGFDGTSALSS-----VERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVEC  542 (571)
T ss_pred             -eEEEEC-CEEEEECCccCCCccce-----EEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEE
Confidence             678889 99999998876321222     23222 24689998555444332222222222111   222334556666


Q ss_pred             EecCC
Q 038993          319 WHPTS  323 (327)
Q Consensus       319 ~~~~~  323 (327)
                      |||++
T Consensus       543 ydp~~  547 (571)
T KOG4441|consen  543 YDPET  547 (571)
T ss_pred             cCCCC
Confidence            77765

>PHA03098 kelch-like protein; Provisional

Probab=98.60  E-value=2.3e-06  Score=83.45  Aligned_cols=191  Identities=10%  Similarity=0.016  Sum_probs=114.9

Q ss_pred             CEEEEEcCCccccceeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCCceec
Q 038993          113 QTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIA  187 (327)
Q Consensus       113 ~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~~~~~  187 (327)
                      ..++.+|   |.|++|.  .+|+++..   ......+  ++.+.+.   +.......+++|+..+++|+..+.+|...  
T Consensus       311 ~~v~~yd---~~~~~W~--~~~~~~~~R~~~~~~~~~~~lyv~GG~---~~~~~~~~v~~yd~~~~~W~~~~~lp~~r--  380 (534)
T PHA03098        311 NSVVSYD---TKTKSWN--KVPELIYPRKNPGVTVFNNRIYVIGGI---YNSISLNTVESWKPGESKWREEPPLIFPR--  380 (534)
T ss_pred             ccEEEEe---CCCCeee--ECCCCCcccccceEEEECCEEEEEeCC---CCCEecceEEEEcCCCCceeeCCCcCcCC--
Confidence            3688999   9999999  99987643   2222222  5544432   22234567999999999999988777533  


Q ss_pred             CCCCeeeeCCcEEEEEeecC--CCccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcC
Q 038993          188 RDSPGVYASGSLHWIVMAEY--GRHDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYR  264 (327)
Q Consensus       188 ~~~~~v~~~G~lywl~~~~~--~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~  264 (327)
                      .....+.++|.+|.+++...  .....+..||+.+++|+.+ ++|...     ...   ..+..+ |+|++++.......
T Consensus       381 ~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-----~~~---~~~~~~-~~iyv~GG~~~~~~  451 (534)
T PHA03098        381 YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH-----YGG---CAIYHD-GKIYVIGGISYIDN  451 (534)
T ss_pred             ccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc-----cCc---eEEEEC-CEEEEECCccCCCC
Confidence            23345778999999987432  1235689999999999987 444332     112   456677 99999987543211


Q ss_pred             C-CeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCCcccCCCcccccccCC---CceEEEEecCCC
Q 038993          265 T-PLSHVWVMTEYGVKDSWTKLFSILEEQVISPSPEFYDYSLPFESLEP---PSLLRGWHPTSF  324 (327)
Q Consensus       265 ~-~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  324 (327)
                      . ..-.+|+.+-.  ..+|++.-.++.+..........+..+.+-..+.   ...+..|||++.
T Consensus       452 ~~~~~~v~~yd~~--~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        452 IKVYNIVESYNPV--TNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CcccceEEEecCC--CCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            0 01235665542  4689987544433221111222333333322221   246778888753

>PHA02713 hypothetical protein; Provisional

Probab=98.49  E-value=5e-06  Score=81.25  Aligned_cols=190  Identities=10%  Similarity=0.094  Sum_probs=115.3

Q ss_pred             EEEEEcCCccccceeeccccCCCCCCC---ceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCCceecC
Q 038993          114 TLAIWTHLRESTAFYRRQRLPWIPKRL---VAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIAR  188 (327)
Q Consensus       114 ~~~V~N~~~P~T~~~~~~~LP~~~~~~---~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~~~~~~  188 (327)
                      .+..+|   |.+++|.  .+++++...   ....++  ++.+.+..  ........++.|+..++.|..++.+|....  
T Consensus       273 ~v~~yd---~~~~~W~--~l~~mp~~r~~~~~a~l~~~IYviGG~~--~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~--  343 (557)
T PHA02713        273 CILVYN---INTMEYS--VISTIPNHIINYASAIVDNEIIIAGGYN--FNNPSLNKVYKINIENKIHVELPPMIKNRC--  343 (557)
T ss_pred             CEEEEe---CCCCeEE--ECCCCCccccceEEEEECCEEEEEcCCC--CCCCccceEEEEECCCCeEeeCCCCcchhh--
Confidence            467789   9999999  998877541   111122  44443321  112235679999999999999987775332  


Q ss_pred             CCCeeeeCCcEEEEEeecC-CCccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcC--
Q 038993          189 DSPGVYASGSLHWIVMAEY-GRHDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYR--  264 (327)
Q Consensus       189 ~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~--  264 (327)
                      ....+.++|.+|.+++... .....+-.||+.+++|+.+ ++|...     ...   ..++++ |+|++++.......  
T Consensus       344 ~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r-----~~~---~~~~~~-g~IYviGG~~~~~~~~  414 (557)
T PHA02713        344 RFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL-----SSY---GMCVLD-QYIYIIGGRTEHIDYT  414 (557)
T ss_pred             ceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc-----ccc---cEEEEC-CEEEEEeCCCcccccc
Confidence            2346788999999998643 2234689999999999987 555433     122   556788 99999987543100  


Q ss_pred             --------------CCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCCcccCCCcccccccCC--C--ceEEEEecCC
Q 038993          265 --------------TPLSHVWVMTEYGVKDSWTKLFSILEEQVISPSPEFYDYSLPFESLEP--P--SLLRGWHPTS  323 (327)
Q Consensus       265 --------------~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~  323 (327)
                                    ...-.+...+-  ..+.|+.+..+.............+.+..+-..++  +  ..+..|||++
T Consensus       415 ~~~~~~~~~~~~~~~~~~~ve~YDP--~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~  489 (557)
T PHA02713        415 SVHHMNSIDMEEDTHSSNKVIRYDT--VNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT  489 (557)
T ss_pred             cccccccccccccccccceEEEECC--CCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence                          00112222221  13679987766555443333344444433322211  1  2356799987

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.49  E-value=6.3e-06  Score=80.47  Aligned_cols=168  Identities=15%  Similarity=0.146  Sum_probs=116.7

Q ss_pred             EEEeccCCcEEeeecC----CCCEEEEEcCCccccceeeccccCCCCCCCceEEEE-------EEEEEEEeCCCCCC-Cc
Q 038993           95 EVVGCCNGLLCIATNR----LPQTLAIWTHLRESTAFYRRQRLPWIPKRLVAFFMG-------LVRIARRSGDACFG-GA  162 (327)
Q Consensus        95 ~~~~sc~GLlcl~~~~----~~~~~~V~N~~~P~T~~~~~~~LP~~~~~~~~~gfg-------vv~v~~~~~~~~~~-~~  162 (327)
                      .-+++++|.|-.....    .-..+-.++   |.|.+|.  ..+++...  ..|+|       ++.+.+.   ++.. ..
T Consensus       374 ~~v~~l~g~iYavGG~dg~~~l~svE~YD---p~~~~W~--~va~m~~~--r~~~gv~~~~g~iYi~GG~---~~~~~~l  443 (571)
T KOG4441|consen  374 FGVAVLDGKLYAVGGFDGEKSLNSVECYD---PVTNKWT--PVAPMLTR--RSGHGVAVLGGKLYIIGGG---DGSSNCL  443 (571)
T ss_pred             ceeEEECCEEEEEeccccccccccEEEec---CCCCccc--ccCCCCcc--eeeeEEEEECCEEEEEcCc---CCCcccc
Confidence            3567777877544321    233577889   9999999  88877654  24444       4444332   2223 66


Q ss_pred             cEEEEEEcCCCceEEcCCCCCceecCCCCeeeeCCcEEEEEeecC-CCccEEEEEeCCCceeeeec-CCCCCCcCCccee
Q 038993          163 AEVKVYSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEY-GRHDFILALDLSDEAYKELP-LPPPVLLETGCRV  240 (327)
Q Consensus       163 ~~~~Vys~~~~~Wr~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~  240 (327)
                      ..++.|+..+++|+.++.++.....  ...+.+||.+|.+++.+. .....+-+||+++.+|+.+. ++...     ...
T Consensus       444 ~sve~YDP~t~~W~~~~~M~~~R~~--~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r-----s~~  516 (571)
T KOG4441|consen  444 NSVECYDPETNTWTLIAPMNTRRSG--FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR-----SAV  516 (571)
T ss_pred             ceEEEEcCCCCceeecCCccccccc--ceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc-----ccc
Confidence            8999999999999999888765432  236788999999998764 23456899999999999993 33222     122


Q ss_pred             eccEEEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEEEEE
Q 038993          241 RANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFS  287 (327)
Q Consensus       241 ~~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~  287 (327)
                         .++..+ |+|+++...++......++.|   +.. .+.|+....
T Consensus       517 ---g~~~~~-~~ly~vGG~~~~~~l~~ve~y---dp~-~d~W~~~~~  555 (571)
T KOG4441|consen  517 ---GVVVLG-GKLYAVGGFDGNNNLNTVECY---DPE-TDTWTEVTE  555 (571)
T ss_pred             ---cEEEEC-CEEEEEecccCccccceeEEc---CCC-CCceeeCCC
Confidence               667888 999999998775555566666   322 468998766

>PHA02790 Kelch-like protein; Provisional

Probab=98.48  E-value=7.2e-06  Score=78.81  Aligned_cols=177  Identities=8%  Similarity=-0.022  Sum_probs=109.3

Q ss_pred             CEEEEEcCCccccceeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCCceec
Q 038993          113 QTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIA  187 (327)
Q Consensus       113 ~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~~~~~  187 (327)
                      ..+..+|   |.+++|.  .+|+++..   ......+  ++.+.+.      .....++.|+..+++|..++.+|.... 
T Consensus       287 ~~v~~Yd---p~~~~W~--~~~~m~~~r~~~~~v~~~~~iYviGG~------~~~~sve~ydp~~n~W~~~~~l~~~r~-  354 (480)
T PHA02790        287 NNAIAVN---YISNNWI--PIPPMNSPRLYASGVPANNKLYVVGGL------PNPTSVERWFHGDAAWVNMPSLLKPRC-  354 (480)
T ss_pred             CeEEEEE---CCCCEEE--ECCCCCchhhcceEEEECCEEEEECCc------CCCCceEEEECCCCeEEECCCCCCCCc-
Confidence            4567789   9999999  99987654   1222222  5555432      123568999999999999988775332 


Q ss_pred             CCCCeeeeCCcEEEEEeecCCCccEEEEEeCCCceeeeecCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCCCe
Q 038993          188 RDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPL  267 (327)
Q Consensus       188 ~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~~  267 (327)
                       ....+.++|.+|.+++... ....+..||+++++|+.++.++...    ...   ..++++ |+|++++.        .
T Consensus       355 -~~~~~~~~g~IYviGG~~~-~~~~ve~ydp~~~~W~~~~~m~~~r----~~~---~~~~~~-~~IYv~GG--------~  416 (480)
T PHA02790        355 -NPAVASINNVIYVIGGHSE-TDTTTEYLLPNHDQWQFGPSTYYPH----YKS---CALVFG-RRLFLVGR--------N  416 (480)
T ss_pred             -ccEEEEECCEEEEecCcCC-CCccEEEEeCCCCEEEeCCCCCCcc----ccc---eEEEEC-CEEEEECC--------c
Confidence             3346788999999987643 2245788999999999884332221    122   556788 99999873        2


Q ss_pred             EEEEEEeeCCCCCCeEEEEEEcCCCCCCCCcccCCCcccccccCC---CceEEEEecCC
Q 038993          268 SHVWVMTEYGVKDSWTKLFSILEEQVISPSPEFYDYSLPFESLEP---PSLLRGWHPTS  323 (327)
Q Consensus       268 l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  323 (327)
                      .+++   +.. .+.|+..-.+..+..........+.+..+--.+.   -..+-.|||++
T Consensus       417 ~e~y---dp~-~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        417 AEFY---CES-SNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             eEEe---cCC-CCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCC
Confidence            2222   222 4689987655443322222233333322222211   24577888875

>PHA02790 Kelch-like protein; Provisional

Probab=98.45  E-value=9.7e-06  Score=77.92  Aligned_cols=137  Identities=12%  Similarity=0.057  Sum_probs=92.8

Q ss_pred             EeccCCcEEeeec-CCCCEEEEEcCCccccceeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEc
Q 038993           97 VGCCNGLLCIATN-RLPQTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSL  170 (327)
Q Consensus        97 ~~sc~GLlcl~~~-~~~~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~  170 (327)
                      .++.+|-|.+... .....+-.++   |.+.+|.  .+|+++..   .....++  ++.+.+..     .....+++|+.
T Consensus       314 ~v~~~~~iYviGG~~~~~sve~yd---p~~n~W~--~~~~l~~~r~~~~~~~~~g~IYviGG~~-----~~~~~ve~ydp  383 (480)
T PHA02790        314 GVPANNKLYVVGGLPNPTSVERWF---HGDAAWV--NMPSLLKPRCNPAVASINNVIYVIGGHS-----ETDTTTEYLLP  383 (480)
T ss_pred             EEEECCEEEEECCcCCCCceEEEE---CCCCeEE--ECCCCCCCCcccEEEEECCEEEEecCcC-----CCCccEEEEeC
Confidence            4456777644332 1234577889   9999999  99988754   1222232  66554421     12357899999


Q ss_pred             CCCceEEcCCCCCceecCCCCeeeeCCcEEEEEeecCCCccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccEEEEeC
Q 038993          171 ARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANYFGVLD  249 (327)
Q Consensus       171 ~~~~Wr~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l~~~~  249 (327)
                      .++.|..++.++....  ....+.++|.+|.++..       .-.||+++++|+.+ ++|...     ...   .+++++
T Consensus       384 ~~~~W~~~~~m~~~r~--~~~~~~~~~~IYv~GG~-------~e~ydp~~~~W~~~~~m~~~r-----~~~---~~~v~~  446 (480)
T PHA02790        384 NHDQWQFGPSTYYPHY--KSCALVFGRRLFLVGRN-------AEFYCESSNTWTLIDDPIYPR-----DNP---ELIIVD  446 (480)
T ss_pred             CCCEEEeCCCCCCccc--cceEEEECCEEEEECCc-------eEEecCCCCcEeEcCCCCCCc-----ccc---EEEEEC
Confidence            9999999887765432  23467889999998753       56799999999988 344322     223   677888


Q ss_pred             CCcEEEEEecCC
Q 038993          250 NGCLCLVSNYGG  261 (327)
Q Consensus       250 ~g~L~~~~~~~~  261 (327)
                       |+|++++....
T Consensus       447 -~~IYviGG~~~  457 (480)
T PHA02790        447 -NKLLLIGGFYR  457 (480)
T ss_pred             -CEEEEECCcCC
Confidence             99999998653

>PHA03098 kelch-like protein; Provisional

Probab=98.28  E-value=5.8e-05  Score=73.66  Aligned_cols=169  Identities=16%  Similarity=0.211  Sum_probs=105.6

Q ss_pred             EeccCCcEEeeecC----CCCEEEEEcCCccccceeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEE
Q 038993           97 VGCCNGLLCIATNR----LPQTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKV  167 (327)
Q Consensus        97 ~~sc~GLlcl~~~~----~~~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~V  167 (327)
                      +++.+|-+.+....    ....+.++|   |.|++|.  .+|+++..   ......+  ++.+.+..  ........+++
T Consensus       338 ~~~~~~~lyv~GG~~~~~~~~~v~~yd---~~~~~W~--~~~~lp~~r~~~~~~~~~~~iYv~GG~~--~~~~~~~~v~~  410 (534)
T PHA03098        338 VTVFNNRIYVIGGIYNSISLNTVESWK---PGESKWR--EEPPLIFPRYNPCVVNVNNLIYVIGGIS--KNDELLKTVEC  410 (534)
T ss_pred             EEEECCEEEEEeCCCCCEecceEEEEc---CCCCcee--eCCCcCcCCccceEEEECCEEEEECCcC--CCCcccceEEE
Confidence            34455655433221    234678899   9999999  98877654   1222222  44443321  11223568999


Q ss_pred             EEcCCCceEEcCCCCCceecCCCCeeeeCCcEEEEEeecCC----CccEEEEEeCCCceeeeec-CCCCCCcCCcceeec
Q 038993          168 YSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYG----RHDFILALDLSDEAYKELP-LPPPVLLETGCRVRA  242 (327)
Q Consensus       168 ys~~~~~Wr~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~----~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~  242 (327)
                      |+..+++|+.++.+|....  ....+..+|.+|.+++....    ....+..||+++++|+.++ +|...     ...  
T Consensus       411 yd~~t~~W~~~~~~p~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-----~~~--  481 (534)
T PHA03098        411 FSLNTNKWSKGSPLPISHY--GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR-----INA--  481 (534)
T ss_pred             EeCCCCeeeecCCCCcccc--CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc-----ccc--
Confidence            9999999999887765432  23467889999999875421    1234899999999999884 33221     122  


Q ss_pred             cEEEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEEEEE
Q 038993          243 NYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFS  287 (327)
Q Consensus       243 ~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~  287 (327)
                       .++..+ |+|++++......  ..-.|++.+-.  ...|.....
T Consensus       482 -~~~~~~-~~iyv~GG~~~~~--~~~~v~~yd~~--~~~W~~~~~  520 (534)
T PHA03098        482 -SLCIFN-NKIYVVGGDKYEY--YINEIEVYDDK--TNTWTLFCK  520 (534)
T ss_pred             -eEEEEC-CEEEEEcCCcCCc--ccceeEEEeCC--CCEEEecCC
Confidence             556677 9999998765421  12356666542  367987754

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=98.21  E-value=0.00015  Score=66.75  Aligned_cols=163  Identities=15%  Similarity=0.105  Sum_probs=97.5

Q ss_pred             CEEEEEcCCcc--ccceeeccccCCCCC-C---CceEEEE--EEEEEEEeCCC---CCCCccEEEEEEcCCCceEEcCC-
Q 038993          113 QTLAIWTHLRE--STAFYRRQRLPWIPK-R---LVAFFMG--LVRIARRSGDA---CFGGAAEVKVYSLARNSWKRIQD-  180 (327)
Q Consensus       113 ~~~~V~N~~~P--~T~~~~~~~LP~~~~-~---~~~~gfg--vv~v~~~~~~~---~~~~~~~~~Vys~~~~~Wr~~~~-  180 (327)
                      ..+++.+   +  .+++|.  .+|+++. .   ......+  ++.+.......   .......++.|+..+++|+.++. 
T Consensus        29 ~~~~~~d---~~~~~~~W~--~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~  103 (346)
T TIGR03547        29 TSWYKLD---LKKPSKGWQ--KIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTR  103 (346)
T ss_pred             CeeEEEE---CCCCCCCce--ECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCC
Confidence            4566665   5  678899  9988762 2   1122222  55554432110   01124579999999999999863 


Q ss_pred             CCCceecCCCCee-eeCCcEEEEEeecCC-----------------------------------CccEEEEEeCCCceee
Q 038993          181 IPPCYIARDSPGV-YASGSLHWIVMAEYG-----------------------------------RHDFILALDLSDEAYK  224 (327)
Q Consensus       181 ~p~~~~~~~~~~v-~~~G~lywl~~~~~~-----------------------------------~~~~il~fD~~~e~~~  224 (327)
                      +|...  .....+ .++|.+|.++.....                                   ....+..||+.+.+|+
T Consensus       104 ~p~~~--~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~  181 (346)
T TIGR03547       104 SPVGL--LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWR  181 (346)
T ss_pred             CCCcc--cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCcee
Confidence            22211  111123 579999999765310                                   0146899999999999


Q ss_pred             ee-cCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEEEEEEcCC
Q 038993          225 EL-PLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSILEE  291 (327)
Q Consensus       225 ~i-~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~  291 (327)
                      .+ ++|....    ...   .++.++ |+|+++...... .....++|..+-..+...|++...++.+
T Consensus       182 ~~~~~p~~~r----~~~---~~~~~~-~~iyv~GG~~~~-~~~~~~~~~y~~~~~~~~W~~~~~m~~~  240 (346)
T TIGR03547       182 NLGENPFLGT----AGS---AIVHKG-NKLLLINGEIKP-GLRTAEVKQYLFTGGKLEWNKLPPLPPP  240 (346)
T ss_pred             ECccCCCCcC----CCc---eEEEEC-CEEEEEeeeeCC-CccchheEEEEecCCCceeeecCCCCCC
Confidence            98 4553221    122   566778 999999876432 1224566765521224589987766543

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02153 epithiospecifier protein

Probab=98.21  E-value=0.00018  Score=66.13  Aligned_cols=163  Identities=11%  Similarity=0.066  Sum_probs=96.8

Q ss_pred             CEEEEEcCCccccceeeccccCCC-----C-CC--CceEEEE--EEEEEEEeCCC---CCCCccEEEEEEcCCCceEEcC
Q 038993          113 QTLAIWTHLRESTAFYRRQRLPWI-----P-KR--LVAFFMG--LVRIARRSGDA---CFGGAAEVKVYSLARNSWKRIQ  179 (327)
Q Consensus       113 ~~~~V~N~~~P~T~~~~~~~LP~~-----~-~~--~~~~gfg--vv~v~~~~~~~---~~~~~~~~~Vys~~~~~Wr~~~  179 (327)
                      ..+.++|   |.|.+|.  .++++     + .+  .....++  ++.+.......   .......+++|+..+++|+.++
T Consensus       101 ~~v~~yd---~~t~~W~--~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~  175 (341)
T PLN02153        101 SDFYSYD---TVKNEWT--FLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLP  175 (341)
T ss_pred             CcEEEEE---CCCCEEE--EeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCC
Confidence            4688999   9999999  88764     2 11  1111221  44333221100   0112357899999999999987


Q ss_pred             CCCCceec-CCCCeeeeCCcEEEEEeecC---------CCccEEEEEeCCCceeeeec----CCCCCCcCCcceeeccEE
Q 038993          180 DIPPCYIA-RDSPGVYASGSLHWIVMAEY---------GRHDFILALDLSDEAYKELP----LPPPVLLETGCRVRANYF  245 (327)
Q Consensus       180 ~~p~~~~~-~~~~~v~~~G~lywl~~~~~---------~~~~~il~fD~~~e~~~~i~----lP~~~~~~~~~~~~~~~l  245 (327)
                      .+...... .....+.++|.+|.+.....         .....+.+||+++.+|+.+.    +|...     ...   ..
T Consensus       176 ~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r-----~~~---~~  247 (341)
T PLN02153        176 DPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSAR-----SVF---AH  247 (341)
T ss_pred             CCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCc-----cee---ee
Confidence            54321111 12235678999999865321         01246899999999999884    24322     122   45


Q ss_pred             EEeCCCcEEEEEecCCC-------cCCCeEEEEEEeeCCCCCCeEEEEEEcCC
Q 038993          246 GVLDNGCLCLVSNYGGG-------YRTPLSHVWVMTEYGVKDSWTKLFSILEE  291 (327)
Q Consensus       246 ~~~~~g~L~~~~~~~~~-------~~~~~l~iW~l~~~~~~~~W~~~~~i~~~  291 (327)
                      +.++ ++|+++......       .....-++|+++-.  ..+|+++......
T Consensus       248 ~~~~-~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~--~~~W~~~~~~~~~  297 (341)
T PLN02153        248 AVVG-KYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE--TLVWEKLGECGEP  297 (341)
T ss_pred             EEEC-CEEEEECcccCCccccccccccccccEEEEEcC--ccEEEeccCCCCC
Confidence            6777 999999885311       01112279999863  4689987654433

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=98.10  E-value=0.0003  Score=65.57  Aligned_cols=177  Identities=15%  Similarity=0.086  Sum_probs=103.1

Q ss_pred             eccCCcEEeeecCCCCEEEEEcCCccc--cceeeccccCCCCC--C--CceEEEE--EEEEEEEeCCCC---CCCccEEE
Q 038993           98 GCCNGLLCIATNRLPQTLAIWTHLRES--TAFYRRQRLPWIPK--R--LVAFFMG--LVRIARRSGDAC---FGGAAEVK  166 (327)
Q Consensus        98 ~sc~GLlcl~~~~~~~~~~V~N~~~P~--T~~~~~~~LP~~~~--~--~~~~gfg--vv~v~~~~~~~~---~~~~~~~~  166 (327)
                      +..++-|.+........+++.+   +-  +++|.  .+|+.+.  +  ......+  ++.+........   ......++
T Consensus        35 ~~~~~~iyv~gG~~~~~~~~~d---~~~~~~~W~--~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~  109 (376)
T PRK14131         35 AIDNNTVYVGLGSAGTSWYKLD---LNAPSKGWT--KIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVY  109 (376)
T ss_pred             EEECCEEEEEeCCCCCeEEEEE---CCCCCCCeE--ECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEE
Confidence            4455555443322334567776   54  57899  8887653  2  1112222  444433211000   11246799


Q ss_pred             EEEcCCCceEEcCCC-CCceecCCCCeee-eCCcEEEEEeecCC-----------------------------------C
Q 038993          167 VYSLARNSWKRIQDI-PPCYIARDSPGVY-ASGSLHWIVMAEYG-----------------------------------R  209 (327)
Q Consensus       167 Vys~~~~~Wr~~~~~-p~~~~~~~~~~v~-~~G~lywl~~~~~~-----------------------------------~  209 (327)
                      +|+..+++|+.+... |...  .....+. .+|.+|.++.....                                   .
T Consensus       110 ~YD~~~n~W~~~~~~~p~~~--~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (376)
T PRK14131        110 KYDPKTNSWQKLDTRSPVGL--AGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFF  187 (376)
T ss_pred             EEeCCCCEEEeCCCCCCCcc--cceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCc
Confidence            999999999998742 2221  1122344 79999999875310                                   1


Q ss_pred             ccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEEEEEE
Q 038993          210 HDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSI  288 (327)
Q Consensus       210 ~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i  288 (327)
                      ...+..||+.+.+|+.+ ++|....    ...   .++..+ ++|+++...... +....++|..+-...+.+|+++..+
T Consensus       188 ~~~v~~YD~~t~~W~~~~~~p~~~~----~~~---a~v~~~-~~iYv~GG~~~~-~~~~~~~~~~~~~~~~~~W~~~~~~  258 (376)
T PRK14131        188 NKEVLSYDPSTNQWKNAGESPFLGT----AGS---AVVIKG-NKLWLINGEIKP-GLRTDAVKQGKFTGNNLKWQKLPDL  258 (376)
T ss_pred             CceEEEEECCCCeeeECCcCCCCCC----Ccc---eEEEEC-CEEEEEeeeECC-CcCChhheEEEecCCCcceeecCCC
Confidence            24699999999999988 4553221    122   556677 999999875322 1235677776532234689988766


Q ss_pred             cC
Q 038993          289 LE  290 (327)
Q Consensus       289 ~~  290 (327)
                      +.
T Consensus       259 p~  260 (376)
T PRK14131        259 PP  260 (376)
T ss_pred             CC
Confidence            54

>PLN02193 nitrile-specifier protein

Probab=98.05  E-value=0.00066  Score=65.18  Aligned_cols=158  Identities=12%  Similarity=0.142  Sum_probs=97.8

Q ss_pred             CEEEEEcCCccccceeeccccCCCC---C-C---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCC
Q 038993          113 QTLAIWTHLRESTAFYRRQRLPWIP---K-R---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPP  183 (327)
Q Consensus       113 ~~~~V~N~~~P~T~~~~~~~LP~~~---~-~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~  183 (327)
                      ..+.++|   |.+.+|.  .+|+..   . .   ......+  ++.+..   .+.......+++|++.++.|+.+..++.
T Consensus       193 ~~v~~yD---~~~~~W~--~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG---~~~~~~~ndv~~yD~~t~~W~~l~~~~~  264 (470)
T PLN02193        193 KHLYVFD---LETRTWS--ISPATGDVPHLSCLGVRMVSIGSTLYVFGG---RDASRQYNGFYSFDTTTNEWKLLTPVEE  264 (470)
T ss_pred             CcEEEEE---CCCCEEE--eCCCCCCCCCCcccceEEEEECCEEEEECC---CCCCCCCccEEEEECCCCEEEEcCcCCC
Confidence            3588999   9999999  876532   1 1   1111222  333322   1222345679999999999999875521


Q ss_pred             ceec-CCCCeeeeCCcEEEEEeecC-CCccEEEEEeCCCceeeeecCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCC
Q 038993          184 CYIA-RDSPGVYASGSLHWIVMAEY-GRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGG  261 (327)
Q Consensus       184 ~~~~-~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~  261 (327)
                      .+.. .....+..++.+|.+..... .....+.+||+.+.+|+.++.|.... ......   .+++++ |+++++.....
T Consensus       265 ~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~-~~R~~~---~~~~~~-gkiyviGG~~g  339 (470)
T PLN02193        265 GPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSF-SIRGGA---GLEVVQ-GKVWVVYGFNG  339 (470)
T ss_pred             CCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCC-CCCCCc---EEEEEC-CcEEEEECCCC
Confidence            1111 12235668999999987543 22346889999999999886543221 111122   566777 99999887543


Q ss_pred             CcCCCeEEEEEEeeCCCCCCeEEEEEE
Q 038993          262 GYRTPLSHVWVMTEYGVKDSWTKLFSI  288 (327)
Q Consensus       262 ~~~~~~l~iW~l~~~~~~~~W~~~~~i  288 (327)
                      .   ..-++|+++-.  ..+|++...+
T Consensus       340 ~---~~~dv~~yD~~--t~~W~~~~~~  361 (470)
T PLN02193        340 C---EVDDVHYYDPV--QDKWTQVETF  361 (470)
T ss_pred             C---ccCceEEEECC--CCEEEEeccC
Confidence            2   24567887752  3679987654

>PLN02153 epithiospecifier protein

Probab=98.01  E-value=0.00084  Score=61.64  Aligned_cols=159  Identities=16%  Similarity=0.209  Sum_probs=94.1

Q ss_pred             CEEEEEcCCccccceeeccccCCCCC--CCceEEE-----E--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCC--
Q 038993          113 QTLAIWTHLRESTAFYRRQRLPWIPK--RLVAFFM-----G--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDI--  181 (327)
Q Consensus       113 ~~~~V~N~~~P~T~~~~~~~LP~~~~--~~~~~gf-----g--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~--  181 (327)
                      ..++++|   |.+.+|.  .+|+...  .....++     +  ++.+..   .+.......+++|+..++.|+.++.+  
T Consensus        50 ~~~~~yd---~~~~~W~--~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG---~~~~~~~~~v~~yd~~t~~W~~~~~~~~  121 (341)
T PLN02153         50 KDLYVFD---FNTHTWS--IAPANGDVPRISCLGVRMVAVGTKLYIFGG---RDEKREFSDFYSYDTVKNEWTFLTKLDE  121 (341)
T ss_pred             CcEEEEE---CCCCEEE--EcCccCCCCCCccCceEEEEECCEEEEECC---CCCCCccCcEEEEECCCCEEEEeccCCC
Confidence            4689999   9999999  8876532  1111122     2  333322   12223345799999999999988755  


Q ss_pred             ---CCceecCCCCeeeeCCcEEEEEeecCC-------CccEEEEEeCCCceeeeecCCCCCCcCCcceeeccEEEEeCCC
Q 038993          182 ---PPCYIARDSPGVYASGSLHWIVMAEYG-------RHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNG  251 (327)
Q Consensus       182 ---p~~~~~~~~~~v~~~G~lywl~~~~~~-------~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~~~l~~~~~g  251 (327)
                         |...  .....+..+|.+|.++.....       ....+.+||+.+.+|+.++.+.... ......   .++.++ |
T Consensus       122 ~~~p~~R--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~-~~r~~~---~~~~~~-~  194 (341)
T PLN02153        122 EGGPEAR--TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF-EKRGGA---GFAVVQ-G  194 (341)
T ss_pred             CCCCCCc--eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC-CCCCcc---eEEEEC-C
Confidence               2211  122357789999999875421       1135889999999999875432110 011122   456778 9


Q ss_pred             cEEEEEecCCC------cCCCeEEEEEEeeCCCCCCeEEEEEE
Q 038993          252 CLCLVSNYGGG------YRTPLSHVWVMTEYGVKDSWTKLFSI  288 (327)
Q Consensus       252 ~L~~~~~~~~~------~~~~~l~iW~l~~~~~~~~W~~~~~i  288 (327)
                      +|+++......      .....-+|++.+-.  ..+|+++...
T Consensus       195 ~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~--~~~W~~~~~~  235 (341)
T PLN02153        195 KIWVVYGFATSILPGGKSDYESNAVQFFDPA--SGKWTEVETT  235 (341)
T ss_pred             eEEEEeccccccccCCccceecCceEEEEcC--CCcEEecccc
Confidence            99998654210      00111246666532  3679987643

>PLN02193 nitrile-specifier protein

Probab=98.00  E-value=0.0011  Score=63.78  Aligned_cols=158  Identities=7%  Similarity=0.026  Sum_probs=96.9

Q ss_pred             CEEEEEcCCccccceeeccccCCCC----CC--CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCCc
Q 038993          113 QTLAIWTHLRESTAFYRRQRLPWIP----KR--LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPC  184 (327)
Q Consensus       113 ~~~~V~N~~~P~T~~~~~~~LP~~~----~~--~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~~  184 (327)
                      ..++++|   |.|.+|.  .+++..    ++  ......+  ++.+...   ........+++|+..+++|..+......
T Consensus       244 ndv~~yD---~~t~~W~--~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~---~~~~~~~~~~~yd~~t~~W~~~~~~~~~  315 (470)
T PLN02193        244 NGFYSFD---TTTNEWK--LLTPVEEGPTPRSFHSMAADEENVYVFGGV---SATARLKTLDSYNIVDKKWFHCSTPGDS  315 (470)
T ss_pred             ccEEEEE---CCCCEEE--EcCcCCCCCCCccceEEEEECCEEEEECCC---CCCCCcceEEEEECCCCEEEeCCCCCCC
Confidence            5688999   9999999  887652    22  1111222  3333221   2223456789999999999988642111


Q ss_pred             eec-CCCCeeeeCCcEEEEEeecCCCccEEEEEeCCCceeeeecC----CCCCCcCCcceeeccEEEEeCCCcEEEEEec
Q 038993          185 YIA-RDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKELPL----PPPVLLETGCRVRANYFGVLDNGCLCLVSNY  259 (327)
Q Consensus       185 ~~~-~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~l----P~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~  259 (327)
                      ... .....+.++|.+|.+..........+..||+.+++|+.++.    |...     ...   ..+.++ ++|+++...
T Consensus       316 ~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R-----~~~---~~~~~~-~~iyv~GG~  386 (470)
T PLN02193        316 FSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSER-----SVF---ASAAVG-KHIVIFGGE  386 (470)
T ss_pred             CCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCc-----cee---EEEEEC-CEEEEECCc
Confidence            111 12235678999999876432223569999999999998842    2221     122   456677 999999886


Q ss_pred             CCCc-----CC--CeEEEEEEeeCCCCCCeEEEEEEc
Q 038993          260 GGGY-----RT--PLSHVWVMTEYGVKDSWTKLFSIL  289 (327)
Q Consensus       260 ~~~~-----~~--~~l~iW~l~~~~~~~~W~~~~~i~  289 (327)
                      ....     ..  ..-++|+++-.  ..+|+++..+.
T Consensus       387 ~~~~~~~~~~~~~~~ndv~~~D~~--t~~W~~~~~~~  421 (470)
T PLN02193        387 IAMDPLAHVGPGQLTDGTFALDTE--TLQWERLDKFG  421 (470)
T ss_pred             cCCccccccCccceeccEEEEEcC--cCEEEEcccCC
Confidence            4210     01  11268999863  46899876554

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=97.98  E-value=0.00059  Score=62.17  Aligned_cols=136  Identities=10%  Similarity=-0.005  Sum_probs=82.7

Q ss_pred             CEEEEEcCCcccccee----eccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCC
Q 038993          113 QTLAIWTHLRESTAFY----RRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPP  183 (327)
Q Consensus       113 ~~~~V~N~~~P~T~~~----~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~  183 (327)
                      ..+..+|   +.+++|    .  .+|+++..   .....++  ++.+...   ........+++|+..++.|..++.+|.
T Consensus        88 ~~v~~~d---~~~~~w~~~~~--~~~~lp~~~~~~~~~~~~~~iYv~GG~---~~~~~~~~v~~yd~~~~~W~~~~~~p~  159 (323)
T TIGR03548        88 SSVYRIT---LDESKEELICE--TIGNLPFTFENGSACYKDGTLYVGGGN---RNGKPSNKSYLFNLETQEWFELPDFPG  159 (323)
T ss_pred             eeEEEEE---EcCCceeeeee--EcCCCCcCccCceEEEECCEEEEEeCc---CCCccCceEEEEcCCCCCeeECCCCCC
Confidence            4678889   989887    6  67776544   2222222  5554432   112335689999999999999987664


Q ss_pred             ceecCCCCeeeeCCcEEEEEeecCCCccEEEEEeCCCceeeeecC-CCCCCcCCcceeeccEEEEeCCCcEEEEEecC
Q 038993          184 CYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKELPL-PPPVLLETGCRVRANYFGVLDNGCLCLVSNYG  260 (327)
Q Consensus       184 ~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~l-P~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~  260 (327)
                      ... .....+.++|.+|.++.........+.+||+++++|+.+.. +...  ..........++..+ ++|+++....
T Consensus       160 ~~r-~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~--~p~~~~~~~~~~~~~-~~iyv~GG~~  233 (323)
T TIGR03548       160 EPR-VQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDS--EPISLLGAASIKINE-SLLLCIGGFN  233 (323)
T ss_pred             CCC-CcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCC--CceeccceeEEEECC-CEEEEECCcC
Confidence            221 12234678999999987643222346899999999998842 2110  010000001344445 8999988754

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=97.94  E-value=0.00099  Score=60.68  Aligned_cols=152  Identities=14%  Similarity=0.131  Sum_probs=93.0

Q ss_pred             EEEEE-cCCccccc-eeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCce----EEcCCCC
Q 038993          114 TLAIW-THLRESTA-FYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSW----KRIQDIP  182 (327)
Q Consensus       114 ~~~V~-N~~~P~T~-~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~W----r~~~~~p  182 (327)
                      .+++. +   |..+ +|.  .+++++..   ......+  ++.+...   +.......++.|+..++.|    +.++.+|
T Consensus        40 ~v~~~~~---~~~~~~W~--~~~~lp~~r~~~~~~~~~~~lyviGG~---~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp  111 (323)
T TIGR03548        40 GIYIAKD---ENSNLKWV--KDGQLPYEAAYGASVSVENGIYYIGGS---NSSERFSSVYRITLDESKEELICETIGNLP  111 (323)
T ss_pred             eeEEEec---CCCceeEE--EcccCCccccceEEEEECCEEEEEcCC---CCCCCceeEEEEEEcCCceeeeeeEcCCCC
Confidence            34544 5   5433 688  77766543   1122222  4444332   2223456889999999888    5666666


Q ss_pred             CceecCCCCeeeeCCcEEEEEeecC-CCccEEEEEeCCCceeeeec-CCCCCCcCCcceeeccEEEEeCCCcEEEEEecC
Q 038993          183 PCYIARDSPGVYASGSLHWIVMAEY-GRHDFILALDLSDEAYKELP-LPPPVLLETGCRVRANYFGVLDNGCLCLVSNYG  260 (327)
Q Consensus       183 ~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~  260 (327)
                      ....  ....+.++|.+|.++.... .....+.+||+.+++|+.++ +|...+    ...   ..+..+ |+|+++....
T Consensus       112 ~~~~--~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r----~~~---~~~~~~-~~iYv~GG~~  181 (323)
T TIGR03548       112 FTFE--NGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR----VQP---VCVKLQ-NELYVFGGGS  181 (323)
T ss_pred             cCcc--CceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC----Ccc---eEEEEC-CEEEEEcCCC
Confidence            4332  3346788999999987532 22356899999999999884 664321    122   456778 9999998765


Q ss_pred             CCcCCCeEEEEEEeeCCCCCCeEEEEEE
Q 038993          261 GGYRTPLSHVWVMTEYGVKDSWTKLFSI  288 (327)
Q Consensus       261 ~~~~~~~l~iW~l~~~~~~~~W~~~~~i  288 (327)
                      ..   ...++|+.+-.  ..+|++...+
T Consensus       182 ~~---~~~~~~~yd~~--~~~W~~~~~~  204 (323)
T TIGR03548       182 NI---AYTDGYKYSPK--KNQWQKVADP  204 (323)
T ss_pred             Cc---cccceEEEecC--CCeeEECCCC
Confidence            32   13456666532  3679886544

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=97.92  E-value=0.0028  Score=59.01  Aligned_cols=148  Identities=15%  Similarity=0.142  Sum_probs=89.8

Q ss_pred             CEEEEEcCCccccceeeccccCCCCC-C---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCCcee
Q 038993          113 QTLAIWTHLRESTAFYRRQRLPWIPK-R---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYI  186 (327)
Q Consensus       113 ~~~~V~N~~~P~T~~~~~~~LP~~~~-~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~~~~  186 (327)
                      ..+.++|   |.|.+|.  .+++++. .   ......+  ++.+.................|+.+++.|..+..+|....
T Consensus       189 ~~v~~YD---~~t~~W~--~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~  263 (376)
T PRK14131        189 KEVLSYD---PSTNQWK--NAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPG  263 (376)
T ss_pred             ceEEEEE---CCCCeee--ECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCc
Confidence            5689999   9999999  9887664 2   1222222  5555442211111112222334667899999987764321


Q ss_pred             c--C----CCCeeeeCCcEEEEEeecCCC------------------ccEEEEEeCCCceeeee-cCCCCCCcCCcceee
Q 038993          187 A--R----DSPGVYASGSLHWIVMAEYGR------------------HDFILALDLSDEAYKEL-PLPPPVLLETGCRVR  241 (327)
Q Consensus       187 ~--~----~~~~v~~~G~lywl~~~~~~~------------------~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~  241 (327)
                      .  .    ....+.++|.+|.++......                  ...+-.||+++.+|+.+ ++|...     ... 
T Consensus       264 ~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r-----~~~-  337 (376)
T PRK14131        264 GSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL-----AYG-  337 (376)
T ss_pred             CCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc-----cce-
Confidence            1  1    111467899999998753200                  01355799999999877 556533     122 


Q ss_pred             ccEEEEeCCCcEEEEEecCCCcCCCeEEEEEEee
Q 038993          242 ANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTE  275 (327)
Q Consensus       242 ~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~  275 (327)
                        ..+.++ |+|+++...... +...-+|+.++-
T Consensus       338 --~av~~~-~~iyv~GG~~~~-~~~~~~v~~~~~  367 (376)
T PRK14131        338 --VSVSWN-NGVLLIGGETAG-GKAVSDVTLLSW  367 (376)
T ss_pred             --EEEEeC-CEEEEEcCCCCC-CcEeeeEEEEEE
Confidence              456778 999999986432 233567777775

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=97.68  E-value=0.0026  Score=58.53  Aligned_cols=133  Identities=17%  Similarity=0.173  Sum_probs=83.9

Q ss_pred             CEEEEEcCCccccceeeccccCCCCC-C---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEc--CCCceEEcCCCCCc
Q 038993          113 QTLAIWTHLRESTAFYRRQRLPWIPK-R---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSL--ARNSWKRIQDIPPC  184 (327)
Q Consensus       113 ~~~~V~N~~~P~T~~~~~~~LP~~~~-~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~--~~~~Wr~~~~~p~~  184 (327)
                      ..+.++|   |.|.+|.  .+++++. .   .....++  ++.+..... . ......+++|+.  +++.|..+..+|..
T Consensus       168 ~~v~~YD---p~t~~W~--~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~-~-~~~~~~~~~y~~~~~~~~W~~~~~m~~~  240 (346)
T TIGR03547       168 KNVLSYD---PSTNQWR--NLGENPFLGTAGSAIVHKGNKLLLINGEIK-P-GLRTAEVKQYLFTGGKLEWNKLPPLPPP  240 (346)
T ss_pred             ceEEEEE---CCCCcee--ECccCCCCcCCCceEEEECCEEEEEeeeeC-C-CccchheEEEEecCCCceeeecCCCCCC
Confidence            5688999   9999999  9987763 2   1222333  555443211 1 122344556655  66799999877643


Q ss_pred             eec--C---CCCeeeeCCcEEEEEeecCC------------------CccEEEEEeCCCceeeee-cCCCCCCcCCccee
Q 038993          185 YIA--R---DSPGVYASGSLHWIVMAEYG------------------RHDFILALDLSDEAYKEL-PLPPPVLLETGCRV  240 (327)
Q Consensus       185 ~~~--~---~~~~v~~~G~lywl~~~~~~------------------~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~  240 (327)
                      ...  .   ....+.++|.+|.++.....                  ....+-.||+++++|+.+ ++|...     ...
T Consensus       241 r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~-----~~~  315 (346)
T TIGR03547       241 KSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGL-----AYG  315 (346)
T ss_pred             CCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCc-----eee
Confidence            211  0   11246789999999875310                  013578999999999887 666533     122


Q ss_pred             eccEEEEeCCCcEEEEEecCC
Q 038993          241 RANYFGVLDNGCLCLVSNYGG  261 (327)
Q Consensus       241 ~~~~l~~~~~g~L~~~~~~~~  261 (327)
                         ..+.++ |+|+++.....
T Consensus       316 ---~~~~~~-~~iyv~GG~~~  332 (346)
T TIGR03547       316 ---VSVSWN-NGVLLIGGENS  332 (346)
T ss_pred             ---EEEEcC-CEEEEEeccCC
Confidence               456677 99999998654

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=97.64  E-value=0.00059  Score=58.60  Aligned_cols=159  Identities=16%  Similarity=0.241  Sum_probs=95.7

Q ss_pred             CEEEEEcCCccccceeeccc----cCCCCCCCceEEEE-EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcC--CCCCce
Q 038993          113 QTLAIWTHLRESTAFYRRQR----LPWIPKRLVAFFMG-LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQ--DIPPCY  185 (327)
Q Consensus       113 ~~~~V~N~~~P~T~~~~~~~----LP~~~~~~~~~gfg-vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~--~~p~~~  185 (327)
                      ..++-++   |-|.+|+.+.    +|+.....+++..| ..-|+.-..++-......+++++..|-.||.+.  +.|+.+
T Consensus       105 N~Ly~fD---p~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pprw  181 (392)
T KOG4693|consen  105 NLLYEFD---PETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRW  181 (392)
T ss_pred             ceeeeec---cccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchh
Confidence            3566778   9999998432    33333223333333 222222111223445678889999999999986  345443


Q ss_pred             ecCCCCeeeeCCcEEEEEeecC----------CCccEEEEEeCCCceeeeec----CCCCCCcCCcceeeccEEEEeCCC
Q 038993          186 IARDSPGVYASGSLHWIVMAEY----------GRHDFILALDLSDEAYKELP----LPPPVLLETGCRVRANYFGVLDNG  251 (327)
Q Consensus       186 ~~~~~~~v~~~G~lywl~~~~~----------~~~~~il~fD~~~e~~~~i~----lP~~~~~~~~~~~~~~~l~~~~~g  251 (327)
                      .-+ ..++.++|.+|-++.+.+          .....|++||+.++.|...+    +|...+     ..   ...+++ |
T Consensus       182 RDF-H~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRR-----SH---S~fvYn-g  251 (392)
T KOG4693|consen  182 RDF-HTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRR-----SH---STFVYN-G  251 (392)
T ss_pred             hhh-hhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccc-----cc---ceEEEc-c
Confidence            222 336778899999987654          12357999999999997652    222221     11   556788 9


Q ss_pred             cEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEEEE
Q 038993          252 CLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLF  286 (327)
Q Consensus       252 ~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~  286 (327)
                      +++++..+.+.-....-++|..+-.  ..-|.++.
T Consensus       252 ~~Y~FGGYng~ln~HfndLy~FdP~--t~~W~~I~  284 (392)
T KOG4693|consen  252 KMYMFGGYNGTLNVHFNDLYCFDPK--TSMWSVIS  284 (392)
T ss_pred             eEEEecccchhhhhhhcceeecccc--cchheeee
Confidence            9999998765322224456666542  23466543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=4.7e-05  Score=66.56  Aligned_cols=42  Identities=31%  Similarity=0.399  Sum_probs=38.2

Q ss_pred             CCCCcHHHHHHHHhcCCcchhhhheeccccchhhcCChhhHH
Q 038993            4 RDPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIK   45 (327)
Q Consensus         4 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~   45 (327)
                      +..|||||+..||+.||.|+|++...|||+|+++.++.....
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~  139 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQ  139 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccccee
Confidence            468999999999999999999999999999999998866544

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=96.62  E-value=0.00079  Score=59.22  Aligned_cols=46  Identities=17%  Similarity=0.283  Sum_probs=41.0

Q ss_pred             CCCCcHHHHHHHHhcCC-----cchhhhheeccccchhhcCChhhHHHHhh
Q 038993            4 RDPLPLHIIDDILSRLH-----VKQLLRLRCVSKTWRDLIDGPDFIKLQLS   49 (327)
Q Consensus         4 ~~~LP~Dll~eIL~rLP-----~ksl~r~r~VcK~W~~li~~~~F~~~~~~   49 (327)
                      +..||||++.+||.++=     ..+|.++.+|||.|+-...+|+|.+....
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~  157 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL  157 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence            56899999999998765     59999999999999999999999887654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=96.58  E-value=0.00085  Score=59.54  Aligned_cols=46  Identities=28%  Similarity=0.410  Sum_probs=40.9

Q ss_pred             CCCCc----HHHHHHHHhcCCcchhhhheeccccchhhcCChhhHHHHhh
Q 038993            4 RDPLP----LHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLS   49 (327)
Q Consensus         4 ~~~LP----~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~~~~~   49 (327)
                      +..||    +++.+.||+.|...+|..|..|||+|+++++++...+....
T Consensus        75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie  124 (499)
T KOG0281|consen   75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIE  124 (499)
T ss_pred             HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence            35689    99999999999999999999999999999999887765543

>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa

Probab=96.07  E-value=0.062  Score=41.96  Aligned_cols=86  Identities=21%  Similarity=0.253  Sum_probs=60.3

Q ss_pred             EEEEEeCCCc--eeeeecCCCCCCcCCc------ceeeccEEEEeCCCcEEEEEecCCC-----cCCCeEEEEEEeeC-C
Q 038993          212 FILALDLSDE--AYKELPLPPPVLLETG------CRVRANYFGVLDNGCLCLVSNYGGG-----YRTPLSHVWVMTEY-G  277 (327)
Q Consensus       212 ~il~fD~~~e--~~~~i~lP~~~~~~~~------~~~~~~~l~~~~~g~L~~~~~~~~~-----~~~~~l~iW~l~~~-~  277 (327)
                      .|+..|+-++  .++.|+||........      .-.....+++.+ |+|-++......     .....+.+|.|... +
T Consensus         7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~-G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~   85 (131)
T PF07762_consen    7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSG-GKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG   85 (131)
T ss_pred             CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecC-CCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence            5889998765  7788899976532111      001123777877 999999886542     24568999999985 2


Q ss_pred             CCCCeEEEEEEcCCCCCCCCc
Q 038993          278 VKDSWTKLFSILEEQVISPSP  298 (327)
Q Consensus       278 ~~~~W~~~~~i~~~~~~~~~~  298 (327)
                      ...+|.+.+++++..++....
T Consensus        86 ~~~~W~~d~~v~~~diw~~~~  106 (131)
T PF07762_consen   86 SSWEWKKDCEVDLSDIWADES  106 (131)
T ss_pred             CCCCEEEeEEEEhhhccCCcC
Confidence            357899999999998877644

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=95.39  E-value=0.19  Score=43.65  Aligned_cols=136  Identities=15%  Similarity=0.129  Sum_probs=81.3

Q ss_pred             CCEEEEEcCCccccceeeccccCC--CCCC----CceEEEE--EEEEEEEeCC------CCCCCccEEEEEEcCCCceEE
Q 038993          112 PQTLAIWTHLRESTAFYRRQRLPW--IPKR----LVAFFMG--LVRIARRSGD------ACFGGAAEVKVYSLARNSWKR  177 (327)
Q Consensus       112 ~~~~~V~N~~~P~T~~~~~~~LP~--~~~~----~~~~gfg--vv~v~~~~~~------~~~~~~~~~~Vys~~~~~Wr~  177 (327)
                      ...+.+.|   -.|..|+  .+-.  .+++    .....++  .+......++      .......++.+++.+|+.|.+
T Consensus       156 S~d~h~ld---~~TmtWr--~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r  230 (392)
T KOG4693|consen  156 SQDTHVLD---FATMTWR--EMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTR  230 (392)
T ss_pred             hccceeEe---ccceeee--ehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEecccccccc
Confidence            45678889   9999999  6522  2222    1121222  1211111111      123566788899999999987


Q ss_pred             cCCCCCceecCCCCeee-eCCcEEEEEeecC---CCccEEEEEeCCCceeeeecC----CCCCCcCCcceeeccEEEEeC
Q 038993          178 IQDIPPCYIARDSPGVY-ASGSLHWIVMAEY---GRHDFILALDLSDEAYKELPL----PPPVLLETGCRVRANYFGVLD  249 (327)
Q Consensus       178 ~~~~p~~~~~~~~~~v~-~~G~lywl~~~~~---~~~~~il~fD~~~e~~~~i~l----P~~~~~~~~~~~~~~~l~~~~  249 (327)
                      ....+..+...++.+.+ -||.+|.++....   ..-.-+..||+.+-.|+.|..    |...+  .  +    .-++.+
T Consensus       231 ~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRR--R--q----C~~v~g  302 (392)
T KOG4693|consen  231 TPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARR--R--Q----CSVVSG  302 (392)
T ss_pred             CCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCccc--c--e----eEEEEC
Confidence            75433322223344454 4999999986553   223458999999999999954    32221  1  1    334567


Q ss_pred             CCcEEEEEecCC
Q 038993          250 NGCLCLVSNYGG  261 (327)
Q Consensus       250 ~g~L~~~~~~~~  261 (327)
                       |+++++.....
T Consensus       303 -~kv~LFGGTsP  313 (392)
T KOG4693|consen  303 -GKVYLFGGTSP  313 (392)
T ss_pred             -CEEEEecCCCC
Confidence             99999987543

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=95.10  E-value=2.8  Score=40.49  Aligned_cols=162  Identities=19%  Similarity=0.135  Sum_probs=91.5

Q ss_pred             CEEEEEcCCccccceeeccccCCCCC----C--CceEEEE-EEEEEEEeCCCC-CCCccEEEEEEcCCCceEEcCCCCCc
Q 038993          113 QTLAIWTHLRESTAFYRRQRLPWIPK----R--LVAFFMG-LVRIARRSGDAC-FGGAAEVKVYSLARNSWKRIQDIPPC  184 (327)
Q Consensus       113 ~~~~V~N~~~P~T~~~~~~~LP~~~~----~--~~~~gfg-vv~v~~~~~~~~-~~~~~~~~Vys~~~~~Wr~~~~~p~~  184 (327)
                      ..+...|   +.|++|.  .+.+...    +  ++...+| .+.|+.  +.+. ......+.||+..+..|..+......
T Consensus       139 ~~l~~~d---~~t~~W~--~l~~~~~~P~~r~~Hs~~~~g~~l~vfG--G~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~  211 (482)
T KOG0379|consen  139 NELHSLD---LSTRTWS--LLSPTGDPPPPRAGHSATVVGTKLVVFG--GIGGTGDSLNDLHIYDLETSTWSELDTQGEA  211 (482)
T ss_pred             hheEecc---CCCCcEE--EecCcCCCCCCcccceEEEECCEEEEEC--CccCcccceeeeeeeccccccceecccCCCC
Confidence            4788999   9999999  7743322    1  3445555 222211  1111 22678999999999999998733222


Q ss_pred             eecCCCC-eeeeCCcEEEEEeecC--CCccEEEEEeCCCceeeeecCCCCCCc-CCcceeeccEEEEeCCCcEEEEEecC
Q 038993          185 YIARDSP-GVYASGSLHWIVMAEY--GRHDFILALDLSDEAYKELPLPPPVLL-ETGCRVRANYFGVLDNGCLCLVSNYG  260 (327)
Q Consensus       185 ~~~~~~~-~v~~~G~lywl~~~~~--~~~~~il~fD~~~e~~~~i~lP~~~~~-~~~~~~~~~~l~~~~~g~L~~~~~~~  260 (327)
                      ....... .+.+++.++.+.....  ....-+..||+.+.+|..+  |..... ......   .++..+ ..+.+++...
T Consensus       212 P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~--~~~g~~p~~R~~h---~~~~~~-~~~~l~gG~~  285 (482)
T KOG0379|consen  212 PSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLL--PTGGDLPSPRSGH---SLTVSG-DHLLLFGGGT  285 (482)
T ss_pred             CCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeec--cccCCCCCCccee---eeEEEC-CEEEEEcCCc
Confidence            2122222 3444555555443331  2334589999999888843  211110 111222   455555 6677766654


Q ss_pred             CCcCCCeEEEEEEeeCCCCCCeEEEEEEc
Q 038993          261 GGYRTPLSHVWVMTEYGVKDSWTKLFSIL  289 (327)
Q Consensus       261 ~~~~~~~l~iW~l~~~~~~~~W~~~~~i~  289 (327)
                      .......-++|.|+..  ...|.+.....
T Consensus       286 ~~~~~~l~~~~~l~~~--~~~w~~~~~~~  312 (482)
T KOG0379|consen  286 DPKQEPLGDLYGLDLE--TLVWSKVESVG  312 (482)
T ss_pred             cccccccccccccccc--ccceeeeeccc
Confidence            4201136678888763  46799987776

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=94.77  E-value=1.8  Score=40.13  Aligned_cols=175  Identities=14%  Similarity=0.127  Sum_probs=94.3

Q ss_pred             CEEEEEcCCccccceeeccccCCCCCC---CceEEE--EEEEEEE--EeCCC--CCCCccEEEEEEcCCCceEEcC--CC
Q 038993          113 QTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFM--GLVRIAR--RSGDA--CFGGAAEVKVYSLARNSWKRIQ--DI  181 (327)
Q Consensus       113 ~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gf--gvv~v~~--~~~~~--~~~~~~~~~Vys~~~~~Wr~~~--~~  181 (327)
                      +.+|.+|   --+.+|+-+..|..|+.   +.....  +++.++.  |...+  .-.......+|++.+..|..+.  +.
T Consensus        98 ndLy~Yn---~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~  174 (521)
T KOG1230|consen   98 NDLYSYN---TKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGG  174 (521)
T ss_pred             eeeeEEe---ccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCC
Confidence            3578889   88888982223544433   222111  1333332  11111  1223456789999999999986  33


Q ss_pred             CCceecCCCCeeeeCCcEEEEEeecC-----CCccEEEEEeCCCceeeeecCCCCCCcCCcceeeccEEEEeCCCcEEEE
Q 038993          182 PPCYIARDSPGVYASGSLHWIVMAEY-----GRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLV  256 (327)
Q Consensus       182 p~~~~~~~~~~v~~~G~lywl~~~~~-----~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~  256 (327)
                      |...-  ..+.|.....|.-++...+     ....-+.+||+++=+|+.+..+.... ......   ++.+.-+|.+.|.
T Consensus       175 PS~RS--GHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~P-tpRSGc---q~~vtpqg~i~vy  248 (521)
T KOG1230|consen  175 PSPRS--GHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGP-TPRSGC---QFSVTPQGGIVVY  248 (521)
T ss_pred             CCCCc--cceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCC-CCCCcc---eEEecCCCcEEEE
Confidence            32111  1111222222222222111     12234899999999999996543211 111122   5666623888887


Q ss_pred             EecCC-------CcCCCeEEEEEEeeC-C--CCCCeEEEEEEcCCCCCCC
Q 038993          257 SNYGG-------GYRTPLSHVWVMTEY-G--VKDSWTKLFSILEEQVISP  296 (327)
Q Consensus       257 ~~~~~-------~~~~~~l~iW~l~~~-~--~~~~W~~~~~i~~~~~~~~  296 (327)
                      +.+..       ..+...-++|+|+-. |  ++-.|+++..+.+.+-++.
T Consensus       249 GGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRs  298 (521)
T KOG1230|consen  249 GGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRS  298 (521)
T ss_pred             cchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCC
Confidence            76542       125678899999743 2  2346888888877665554

>PF13964 Kelch_6: Kelch motif

Probab=94.65  E-value=0.062  Score=34.10  Aligned_cols=39  Identities=15%  Similarity=0.250  Sum_probs=31.8

Q ss_pred             CeeeeCCcEEEEEeecC--CCccEEEEEeCCCceeeee-cCC
Q 038993          191 PGVYASGSLHWIVMAEY--GRHDFILALDLSDEAYKEL-PLP  229 (327)
Q Consensus       191 ~~v~~~G~lywl~~~~~--~~~~~il~fD~~~e~~~~i-~lP  229 (327)
                      ..|.++|.+|.++....  .....+..||+++.+|+.+ ++|
T Consensus         6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp   47 (50)
T PF13964_consen    6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP   47 (50)
T ss_pred             EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence            46889999999987764  3456899999999999998 444

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=94.49  E-value=3.9  Score=37.60  Aligned_cols=139  Identities=14%  Similarity=0.157  Sum_probs=80.6

Q ss_pred             CCEEEEEcCCccccceeeccccCCCCCC--C-ceEEEE--EEEEEEEeCCCC--CCCccEEEEEEc----------CCCc
Q 038993          112 PQTLAIWTHLRESTAFYRRQRLPWIPKR--L-VAFFMG--LVRIARRSGDAC--FGGAAEVKVYSL----------ARNS  174 (327)
Q Consensus       112 ~~~~~V~N~~~P~T~~~~~~~LP~~~~~--~-~~~gfg--vv~v~~~~~~~~--~~~~~~~~Vys~----------~~~~  174 (327)
                      ..+.+|++   +.|+...  .+|.....  . ..+..|  +|.+........  ......+|+++-          .+-+
T Consensus        85 ~~~t~vyD---t~t~av~--~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~  159 (342)
T PF07893_consen   85 SGRTLVYD---TDTRAVA--TGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWS  159 (342)
T ss_pred             CCCeEEEE---CCCCeEe--ccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcce
Confidence            56789999   9999999  99987654  1 112222  555543221110  011115566532          2236


Q ss_pred             eEEcCCCCCceec------CCCCeeeeCCcEEEEEeecCCCccEEEEEeCCCceeeee---cCCCCCCcC--Ccceeecc
Q 038993          175 WKRIQDIPPCYIA------RDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAYKEL---PLPPPVLLE--TGCRVRAN  243 (327)
Q Consensus       175 Wr~~~~~p~~~~~------~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i---~lP~~~~~~--~~~~~~~~  243 (327)
                      |+.++..|+....      ..+.+|. +|.--|+.....  ...-.+||+++.+|+..   .||.....+  ...+.   
T Consensus       160 W~~LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~--~~GTysfDt~~~~W~~~GdW~LPF~G~a~y~~el~~---  233 (342)
T PF07893_consen  160 WRSLPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGR--RWGTYSFDTESHEWRKHGDWMLPFHGQAEYVPELDL---  233 (342)
T ss_pred             EEcCCCCCccccCCcccceEEEEEEe-cCCeEEEEecCC--ceEEEEEEcCCcceeeccceecCcCCccEECCCcCe---
Confidence            8887665533222      2234556 888888865541  12589999999999998   788765321  12233   


Q ss_pred             EEEEeCCC---cEEEEEecCC
Q 038993          244 YFGVLDNG---CLCLVSNYGG  261 (327)
Q Consensus       244 ~l~~~~~g---~L~~~~~~~~  261 (327)
                      .++...++   .||.+.....
T Consensus       234 W~Gls~~~~~~~lca~dv~~~  254 (342)
T PF07893_consen  234 WFGLSSDGGGGHLCACDVSSA  254 (342)
T ss_pred             EEEeccCCCCcEEEEEecccc
Confidence            55555433   7887776553

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=93.91  E-value=1.5  Score=40.57  Aligned_cols=118  Identities=13%  Similarity=0.095  Sum_probs=71.2

Q ss_pred             ccEEEEEEcCCCceEEcCCCCCc-eecCCCCeeeeCCcEEEEEeecC------C-CccEEEEEeCCCceeeeecCCCCCC
Q 038993          162 AAEVKVYSLARNSWKRIQDIPPC-YIARDSPGVYASGSLHWIVMAEY------G-RHDFILALDLSDEAYKELPLPPPVL  233 (327)
Q Consensus       162 ~~~~~Vys~~~~~Wr~~~~~p~~-~~~~~~~~v~~~G~lywl~~~~~------~-~~~~il~fD~~~e~~~~i~lP~~~~  233 (327)
                      .....+|+..++.|+.+...... +.......|+-.|.+|..+....      . ..--+-.||+.+.+|..+.++.+..
T Consensus        97 YndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS  176 (521)
T KOG1230|consen   97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPS  176 (521)
T ss_pred             eeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCC
Confidence            45678899999999998632211 11222223344576666554332      1 1123789999999999998876552


Q ss_pred             cCCcceeeccEEEEeCCCcEEEEEecCCCc--CCCeEEEEEEeeCCCCCCeEEEEE
Q 038993          234 LETGCRVRANYFGVLDNGCLCLVSNYGGGY--RTPLSHVWVMTEYGVKDSWTKLFS  287 (327)
Q Consensus       234 ~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~--~~~~l~iW~l~~~~~~~~W~~~~~  287 (327)
                        .....   +++.+. .+|.+++......  ..--=+||+.+-.  .-.|+|+-.
T Consensus       177 --~RSGH---RMvawK-~~lilFGGFhd~nr~y~YyNDvy~FdLd--tykW~Klep  224 (521)
T KOG1230|consen  177 --PRSGH---RMVAWK-RQLILFGGFHDSNRDYIYYNDVYAFDLD--TYKWSKLEP  224 (521)
T ss_pred             --CCccc---eeEEee-eeEEEEcceecCCCceEEeeeeEEEecc--ceeeeeccC
Confidence              22233   778888 8898888754431  1112356665531  256998765

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=93.10  E-value=0.25  Score=30.64  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=31.6

Q ss_pred             CeeeeCCcEEEEEeecC--CCccEEEEEeCCCceeeee-cCC
Q 038993          191 PGVYASGSLHWIVMAEY--GRHDFILALDLSDEAYKEL-PLP  229 (327)
Q Consensus       191 ~~v~~~G~lywl~~~~~--~~~~~il~fD~~~e~~~~i-~lP  229 (327)
                      ..+.++|.+|.++....  .....+..||+.+.+|+.+ ++|
T Consensus         6 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    6 AAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             EEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             EEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            36788999999998765  4457899999999999987 443

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=92.62  E-value=11  Score=36.92  Aligned_cols=44  Identities=30%  Similarity=0.389  Sum_probs=39.0

Q ss_pred             CCCCcHHHHHHHHhcCCcchhhhheeccccchhhcCChhhHHHH
Q 038993            4 RDPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQ   47 (327)
Q Consensus         4 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~~~   47 (327)
                      +..||-++...||.-|+.++++.++.||+.|+.++.+.......
T Consensus       108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~  151 (537)
T KOG0274|consen  108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRM  151 (537)
T ss_pred             hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhh
Confidence            45799999999999999999999999999999999976665533

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=92.51  E-value=1.4  Score=42.48  Aligned_cols=156  Identities=11%  Similarity=0.054  Sum_probs=90.0

Q ss_pred             EEEEEcCCccccceeeccccCCCCCC------CceEEEE--EEEEEEEeCCC-CCCCccEEEEEEcCCCceEEcCCCCCc
Q 038993          114 TLAIWTHLRESTAFYRRQRLPWIPKR------LVAFFMG--LVRIARRSGDA-CFGGAAEVKVYSLARNSWKRIQDIPPC  184 (327)
Q Consensus       114 ~~~V~N~~~P~T~~~~~~~LP~~~~~------~~~~gfg--vv~v~~~~~~~-~~~~~~~~~Vys~~~~~Wr~~~~~p~~  184 (327)
                      .++|+|   --++.|.  ........      ......+  ++.+..   .+ .......+..|+..|+.|+........
T Consensus        89 dl~~~d---~~~~~w~--~~~~~g~~p~~r~g~~~~~~~~~l~lfGG---~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~  160 (482)
T KOG0379|consen   89 DLYVLD---LESQLWT--KPAATGDEPSPRYGHSLSAVGDKLYLFGG---TDKKYRNLNELHSLDLSTRTWSLLSPTGDP  160 (482)
T ss_pred             eeEEee---cCCcccc--cccccCCCCCcccceeEEEECCeEEEEcc---ccCCCCChhheEeccCCCCcEEEecCcCCC
Confidence            589999   7777777  54322211      1111222  222211   11 233467899999999999988633221


Q ss_pred             eec-CCCCeeeeCCcEEEEEeecCC--CccEEEEEeCCCceeeeecCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCC
Q 038993          185 YIA-RDSPGVYASGSLHWIVMAEYG--RHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGG  261 (327)
Q Consensus       185 ~~~-~~~~~v~~~G~lywl~~~~~~--~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~  261 (327)
                      +.. .....+..+-.+|..+.....  ...-+.+||+++.+|..+....... ......   .+++.+ ++++++.....
T Consensus       161 P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P-~pR~gH---~~~~~~-~~~~v~gG~~~  235 (482)
T KOG0379|consen  161 PPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAP-SPRYGH---AMVVVG-NKLLVFGGGDD  235 (482)
T ss_pred             CCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCC-CCCCCc---eEEEEC-CeEEEEecccc
Confidence            111 122345566777777765542  3567999999999999985433221 111222   567777 88888877652


Q ss_pred             CcCCCeEEEEEEeeCCCCCCeEEE
Q 038993          262 GYRTPLSHVWVMTEYGVKDSWTKL  285 (327)
Q Consensus       262 ~~~~~~l~iW~l~~~~~~~~W~~~  285 (327)
                       .....=++|.|+-..  .+|.++
T Consensus       236 -~~~~l~D~~~ldl~~--~~W~~~  256 (482)
T KOG0379|consen  236 -GDVYLNDVHILDLST--WEWKLL  256 (482)
T ss_pred             -CCceecceEeeeccc--ceeeec
Confidence             123356788887532  456643

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=90.40  E-value=2.9  Score=36.74  Aligned_cols=118  Identities=15%  Similarity=0.217  Sum_probs=71.3

Q ss_pred             EEeccCCcEEeeecCCCCEEEEEcCCccccceeeccccCCCCCC---CceEEE---EEEEEEEEeCCCCCCCccEEEEEE
Q 038993           96 VVGCCNGLLCIATNRLPQTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFM---GLVRIARRSGDACFGGAAEVKVYS  169 (327)
Q Consensus        96 ~~~sc~GLlcl~~~~~~~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gf---gvv~v~~~~~~~~~~~~~~~~Vys  169 (327)
                      +.+.-+|-|-+... ..+.+.-.|   |.++.--  .+|.+...   ...+.-   |-+++..       .....+.-|+
T Consensus       194 i~atpdGsvwyasl-agnaiarid---p~~~~ae--v~p~P~~~~~gsRriwsdpig~~witt-------wg~g~l~rfd  260 (353)
T COG4257         194 ICATPDGSVWYASL-AGNAIARID---PFAGHAE--VVPQPNALKAGSRRIWSDPIGRAWITT-------WGTGSLHRFD  260 (353)
T ss_pred             eEECCCCcEEEEec-cccceEEcc---cccCCcc--eecCCCcccccccccccCccCcEEEec-------cCCceeeEeC
Confidence            44444555554432 345667779   9999666  88888653   111111   1455543       4567788899


Q ss_pred             cCCCceEEcCCCCCceecCCCCeeeeC-CcEEEEEeecCCCccEEEEEeCCCceeeeecCCCCC
Q 038993          170 LARNSWKRIQDIPPCYIARDSPGVYAS-GSLHWIVMAEYGRHDFILALDLSDEAYKELPLPPPV  232 (327)
Q Consensus       170 ~~~~~Wr~~~~~p~~~~~~~~~~v~~~-G~lywl~~~~~~~~~~il~fD~~~e~~~~i~lP~~~  232 (327)
                      ..+.+|++-. +|..-  ....+.+++ --.-|+..-.   ...|+.||.++++|+++++|...
T Consensus       261 Ps~~sW~eyp-LPgs~--arpys~rVD~~grVW~sea~---agai~rfdpeta~ftv~p~pr~n  318 (353)
T COG4257         261 PSVTSWIEYP-LPGSK--ARPYSMRVDRHGRVWLSEAD---AGAIGRFDPETARFTVLPIPRPN  318 (353)
T ss_pred             cccccceeee-CCCCC--CCcceeeeccCCcEEeeccc---cCceeecCcccceEEEecCCCCC
Confidence            9998998763 22111  112244443 2334664433   24799999999999999988654

>PF13964 Kelch_6: Kelch motif

Probab=89.83  E-value=0.82  Score=28.78  Aligned_cols=25  Identities=20%  Similarity=0.480  Sum_probs=21.5

Q ss_pred             CCCccEEEEEEcCCCceEEcCCCCC
Q 038993          159 FGGAAEVKVYSLARNSWKRIQDIPP  183 (327)
Q Consensus       159 ~~~~~~~~Vys~~~~~Wr~~~~~p~  183 (327)
                      ......+++|+..+++|+.++.+|.
T Consensus        24 ~~~~~~v~~yd~~t~~W~~~~~mp~   48 (50)
T PF13964_consen   24 GKYSNDVERYDPETNTWEQLPPMPT   48 (50)
T ss_pred             CCccccEEEEcCCCCcEEECCCCCC
Confidence            4567899999999999999987763

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=89.81  E-value=0.89  Score=28.53  Aligned_cols=38  Identities=13%  Similarity=0.150  Sum_probs=30.2

Q ss_pred             CeeeeCCcEEEEEee--cC--CCccEEEEEeCCCceeeeecC
Q 038993          191 PGVYASGSLHWIVMA--EY--GRHDFILALDLSDEAYKELPL  228 (327)
Q Consensus       191 ~~v~~~G~lywl~~~--~~--~~~~~il~fD~~~e~~~~i~l  228 (327)
                      ..+.+++++|.++..  ..  .....+-.||+++.+|+.+..
T Consensus         6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~   47 (49)
T PF07646_consen    6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP   47 (49)
T ss_pred             EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence            367889999999887  11  455678999999999998753

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=87.80  E-value=1  Score=27.74  Aligned_cols=34  Identities=24%  Similarity=0.475  Sum_probs=25.6

Q ss_pred             EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCC
Q 038993          147 LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIP  182 (327)
Q Consensus       147 vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p  182 (327)
                      ++.+.....  .......+++|+..++.|+.++.+|
T Consensus        14 iyv~GG~~~--~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen   14 IYVIGGYDG--NNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             EEEEEEBES--TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             EEEEeeecc--cCceeeeEEEEeCCCCEEEEcCCCC
Confidence            555555432  3467889999999999999987665

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>smart00612 Kelch Kelch domain

Probab=86.63  E-value=1.8  Score=26.16  Aligned_cols=25  Identities=24%  Similarity=0.506  Sum_probs=20.4

Q ss_pred             CCccEEEEEEcCCCceEEcCCCCCc
Q 038993          160 GGAAEVKVYSLARNSWKRIQDIPPC  184 (327)
Q Consensus       160 ~~~~~~~Vys~~~~~Wr~~~~~p~~  184 (327)
                      .....+++|+..++.|+.++.+|..
T Consensus        12 ~~~~~v~~yd~~~~~W~~~~~~~~~   36 (47)
T smart00612       12 QRLKSVEVYDPETNKWTPLPSMPTP   36 (47)
T ss_pred             ceeeeEEEECCCCCeEccCCCCCCc
Confidence            4467899999999999998877653

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=83.91  E-value=1.8  Score=26.97  Aligned_cols=35  Identities=11%  Similarity=0.127  Sum_probs=21.9

Q ss_pred             eeee-CCcEEEEEeecCC--CccEEEEEeCCCceeeee
Q 038993          192 GVYA-SGSLHWIVMAEYG--RHDFILALDLSDEAYKEL  226 (327)
Q Consensus       192 ~v~~-~G~lywl~~~~~~--~~~~il~fD~~~e~~~~i  226 (327)
                      .+.+ ++.+|..+.....  ...-+..||+++++|+.+
T Consensus         7 ~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~   44 (49)
T PF13418_consen    7 AVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL   44 (49)
T ss_dssp             EEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred             EEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence            4555 5788888765541  234588999999999998

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=83.65  E-value=0.45  Score=44.07  Aligned_cols=38  Identities=24%  Similarity=0.362  Sum_probs=34.9

Q ss_pred             CCCcHHHHHHHHhcCCcchhhhheeccccchhhcCChh
Q 038993            5 DPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPD   42 (327)
Q Consensus         5 ~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~   42 (327)
                      -.||.+++..||+-|..|++.|++.+||.|+-+..|..
T Consensus        73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~  110 (483)
T KOG4341|consen   73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS  110 (483)
T ss_pred             ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence            36999999999999999999999999999999988744

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=82.15  E-value=35  Score=31.36  Aligned_cols=85  Identities=19%  Similarity=0.338  Sum_probs=54.1

Q ss_pred             EEEEEEcCCCceEEcCC--CCCceecCCCCeeeeCCcEEEEEeecCCCccEEEEEeCCCcee-----------eeecCCC
Q 038993          164 EVKVYSLARNSWKRIQD--IPPCYIARDSPGVYASGSLHWIVMAEYGRHDFILALDLSDEAY-----------KELPLPP  230 (327)
Q Consensus       164 ~~~Vys~~~~~Wr~~~~--~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~-----------~~i~lP~  230 (327)
                      ...-|+-++..|+...+  +|.     ...+.|+..-=-|++.........|-+.|+.+..-           .++..|.
T Consensus       200 GTysfDt~~~~W~~~GdW~LPF-----~G~a~y~~el~~W~Gls~~~~~~~lca~dv~~~~~~~~pp~~~~~~~~l~~~~  274 (342)
T PF07893_consen  200 GTYSFDTESHEWRKHGDWMLPF-----HGQAEYVPELDLWFGLSSDGGGGHLCACDVSSADSASPPPEWKLTWEELFPPE  274 (342)
T ss_pred             EEEEEEcCCcceeeccceecCc-----CCccEECCCcCeEEEeccCCCCcEEEEEeccccccCCCCCcceeccccccccc
Confidence            56667777789999974  442     33467776666788776643235789999877322           2223332


Q ss_pred             CCCcCCcceeeccEEEEeCCCcEEEEEec
Q 038993          231 PVLLETGCRVRANYFGVLDNGCLCLVSNY  259 (327)
Q Consensus       231 ~~~~~~~~~~~~~~l~~~~~g~L~~~~~~  259 (327)
                      ..   .....   .|+-+++|+.|++...
T Consensus       275 ~~---~~~~~---~Lv~lG~grFCi~~~~  297 (342)
T PF07893_consen  275 EW---RHVGA---TLVYLGSGRFCIVEFF  297 (342)
T ss_pred             cc---cccCc---eEEECCCCCEEEEEEe
Confidence            21   11233   8888888999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	327
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 3e-06
 Identities = 54/372 (14%), Positives = 92/372 (24%), Gaps = 120/372 (32%)

Query: 29  CVSKTWRDLIDGPDFIKLQLSRN-----------QARDRSIITV----GLGSTDTLYEEK 73
              + + D      F K  +SR            + R    + +    G G T  +  + 
Sbjct: 115 QRDRLYND---NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-WVALDV 170

Query: 74  YENGCIATKLDHP--WMDSKQWIEVVGCCN---GLLCIATNRLPQTLAIWTHLRESTA-- 126
             +  +  K+D    W++       +  CN    +L +    L Q    WT   + ++  
Sbjct: 171 CLSYKVQCKMDFKIFWLN-------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 127 -------------FYRRQRLP---------WIPKRLVAFFMG---LVRIARRSGDACFGG 161
                          + +               K   AF +    L+   R      F  
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL-TTRFKQVTDFLS 282

Query: 162 AAEVKVYS----------------LARNSWKRIQDIPP--CYIARDSPGVYA-------S 196
           AA     S                L +    R QD+P         +P   +        
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT---NPRRLSIIAESIRD 339

Query: 197 GSLHWIVMAEYGRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANY--FGVLDNGCLC 254
           G   W              ++ S        L P          R  +    V       
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNV-----LEPAEY-------RKMFDRLSVFPPSA-- 385

Query: 255 LVSNYGGGYRTP---LSHVWV-MTEYGVKDSWTKL--FSILEEQVISPSPEFYDYSLPFE 308
                      P   LS +W  + +  V     KL  +S++E+Q           S+  E
Sbjct: 386 ---------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ--PKESTISIPSIYLE 434

Query: 309 SLEPPSLLRGWH 320
                      H
Sbjct: 435 LKVKLENEYALH 446

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 1  MDDRDPLPLHIIDDILSRLHVKQLLRL-RCVSKTWRDLIDGPDFIKLQLSRN 51
          ++    LP  ++  +L+ L   +L++  R V   W++L+DG     L+  + 
Sbjct: 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	327
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	99.19
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.15
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.91
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.83
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.81
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	98.8
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.79
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.69
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.64
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.62
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.6
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.6
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.59
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.57
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.52
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.5
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	98.49
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.26
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.01
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	98.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.99
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.62
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.37
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.33
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.49
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	87.41

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=99.19  E-value=6.6e-12  Score=110.12  Aligned_cols=51  Identities=24%  Similarity=0.467  Sum_probs=48.0

Q ss_pred             CCCCCCCcHHHHHHHHhcCCcchhh-hheeccccchhhcCChhhHHHHhhcc
Q 038993            1 MDDRDPLPLHIIDDILSRLHVKQLL-RLRCVSKTWRDLIDGPDFIKLQLSRN   51 (327)
Q Consensus         1 m~~~~~LP~Dll~eIL~rLP~ksl~-r~r~VcK~W~~li~~~~F~~~~~~~~   51 (327)
                      |..+..||+||+.+||+|||+++|+ ||++|||+|+++++++.|.+.+..+.
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~   99 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE   99 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence            4567899999999999999999999 99999999999999999999998876

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.15  E-value=1.1e-11  Score=80.53  Aligned_cols=45  Identities=27%  Similarity=0.412  Sum_probs=39.4

Q ss_pred             CCCCCCcHHHHHHHHhcCCcchhhhheeccccchhhcCChhhHHH
Q 038993            2 DDRDPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKL   46 (327)
Q Consensus         2 ~~~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~~   46 (327)
                      ..+..||+|++.+||++||++++.++++|||+|+.++.++.|.+.
T Consensus         7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~   51 (53)
T 1fs1_A            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT   51 (53)
T ss_dssp             --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC--
T ss_pred             CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHh
Confidence            357789999999999999999999999999999999999987653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.91  E-value=2.5e-07  Score=82.36  Aligned_cols=156  Identities=12%  Similarity=0.045  Sum_probs=105.8

Q ss_pred             EEEEEcCCccccceeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCCceecC
Q 038993          114 TLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIAR  188 (327)
Q Consensus       114 ~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~~~~~~  188 (327)
                      .+.++|   |.|++|.  .+|+.+..   .....++  ++.+......++......+++|+..+++|+.+..+|...  .
T Consensus        68 ~~~~~d---~~~~~W~--~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--~  140 (315)
T 4asc_A           68 YFLQFD---HLDSEWL--GMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV--Y  140 (315)
T ss_dssp             EEEEEE---TTTTEEE--ECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCC--B
T ss_pred             ceEEec---CCCCeEE--ECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcc--c
Confidence            488999   9999999  99887755   2222222  444433221122355678999999999999998776543  2


Q ss_pred             CCCeeeeCCcEEEEEeecC--CCccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCC
Q 038993          189 DSPGVYASGSLHWIVMAEY--GRHDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRT  265 (327)
Q Consensus       189 ~~~~v~~~G~lywl~~~~~--~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~  265 (327)
                      ....+.++|.+|.++....  .....+..||+.+.+|+.+ ++|...     ...   ..+.++ |+|+++......  .
T Consensus       141 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-----~~~---~~~~~~-~~iyv~GG~~~~--~  209 (315)
T 4asc_A          141 GHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTAR-----SLF---GATVHD-GRIIVAAGVTDT--G  209 (315)
T ss_dssp             SCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCC-----BSC---EEEEET-TEEEEEEEECSS--S
T ss_pred             ceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCch-----hce---EEEEEC-CEEEEEeccCCC--C
Confidence            3346778999999987622  2335699999999999988 455432     122   556777 999999987543  1


Q ss_pred             CeEEEEEEeeCCCCCCeEEEEEEc
Q 038993          266 PLSHVWVMTEYGVKDSWTKLFSIL  289 (327)
Q Consensus       266 ~~l~iW~l~~~~~~~~W~~~~~i~  289 (327)
                      ..-++|+++-.  ..+|+++..++
T Consensus       210 ~~~~~~~yd~~--~~~W~~~~~~p  231 (315)
T 4asc_A          210 LTSSAEVYSIT--DNKWAPFEAFP  231 (315)
T ss_dssp             EEEEEEEEETT--TTEEEEECCCS
T ss_pred             ccceEEEEECC--CCeEEECCCCC
Confidence            24477887652  36899885433

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.83  E-value=5.8e-07  Score=79.48  Aligned_cols=204  Identities=10%  Similarity=0.020  Sum_probs=122.7

Q ss_pred             eccCCcEEeeec---CCCCEEEEEcCCccccceeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEEE
Q 038993           98 GCCNGLLCIATN---RLPQTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVYS  169 (327)
Q Consensus        98 ~sc~GLlcl~~~---~~~~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys  169 (327)
                      ...+|.|.+...   .....+.++|   |.|++|.  .+|+++..   .....++  ++.+....  ........+++|+
T Consensus        52 ~~~~~~lyv~GG~~~~~~~~~~~~d---~~~~~W~--~~~~~p~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~~~d  124 (306)
T 3ii7_A           52 VFWDNVVYILGGSQLFPIKRMDCYN---VVKDSWY--SKLGPPTPRDSLAACAAEGKIYTSGGSE--VGNSALYLFECYD  124 (306)
T ss_dssp             EEETTEEEEECCBSSSBCCEEEEEE---TTTTEEE--EEECCSSCCBSCEEEEETTEEEEECCBB--TTBSCCCCEEEEE
T ss_pred             EEECCEEEEEeCCCCCCcceEEEEe---CCCCeEE--ECCCCCccccceeEEEECCEEEEECCCC--CCCcEeeeEEEEe
Confidence            334665544321   1346789999   9999999  98876654   2222223  44433221  1334567899999


Q ss_pred             cCCCceEEcCCCCCceecCCCCeeeeCCcEEEEEeecCC-C----ccEEEEEeCCCceeeee-cCCCCCCcCCcceeecc
Q 038993          170 LARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYG-R----HDFILALDLSDEAYKEL-PLPPPVLLETGCRVRAN  243 (327)
Q Consensus       170 ~~~~~Wr~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~-~----~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~  243 (327)
                      ..+++|+.++.+|...  .....+.++|.+|.++..... .    ...+..||+++++|+.+ ++|...     ...   
T Consensus       125 ~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-----~~~---  194 (306)
T 3ii7_A          125 TRTESWHTKPSMLTQR--CSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEAR-----KNH---  194 (306)
T ss_dssp             TTTTEEEEECCCSSCC--BSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCC-----BSC---
T ss_pred             CCCCceEeCCCCcCCc--ceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchh-----hcc---
Confidence            9999999998777543  223467789999999875431 1    45699999999999999 444432     122   


Q ss_pred             EEEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCCcccCCCcccccccC---CCceEEEEe
Q 038993          244 YFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSILEEQVISPSPEFYDYSLPFESLE---PPSLLRGWH  320 (327)
Q Consensus       244 ~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  320 (327)
                      .++.++ |+|+++......  ...-++|+++-.  ..+|+++..++............+.++.+--.+   .-.-+..||
T Consensus       195 ~~~~~~-~~i~v~GG~~~~--~~~~~~~~yd~~--~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd  269 (306)
T 3ii7_A          195 GLVFVK-DKIFAVGGQNGL--GGLDNVEYYDIK--LNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYN  269 (306)
T ss_dssp             EEEEET-TEEEEECCEETT--EEBCCEEEEETT--TTEEEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEE
T ss_pred             eEEEEC-CEEEEEeCCCCC--CCCceEEEeeCC--CCcEEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEc
Confidence            566777 999999765432  113356777642  367998754433222111112233333332221   224567777


Q ss_pred             cCC
Q 038993          321 PTS  323 (327)
Q Consensus       321 ~~~  323 (327)
                      +++
T Consensus       270 ~~~  272 (306)
T 3ii7_A          270 TET  272 (306)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.81  E-value=3.4e-07  Score=80.83  Aligned_cols=203  Identities=12%  Similarity=0.112  Sum_probs=122.9

Q ss_pred             eccCCcEEeeec----CCCCEEEEEcCCccccceeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEE
Q 038993           98 GCCNGLLCIATN----RLPQTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVY  168 (327)
Q Consensus        98 ~sc~GLlcl~~~----~~~~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vy  168 (327)
                      ...+|.|.+...    .....+.++|   |.|++|.  .+|+++..   .....++  ++.+....   .......+++|
T Consensus        58 ~~~~~~lyv~GG~~~~~~~~~~~~~d---~~~~~W~--~~~~~p~~r~~~~~~~~~~~iyv~GG~~---~~~~~~~~~~~  129 (302)
T 2xn4_A           58 VYMAGLVFAVGGFNGSLRVRTVDSYD---PVKDQWT--SVANMRDRRSTLGAAVLNGLLYAVGGFD---GSTGLSSVEAY  129 (302)
T ss_dssp             EEETTEEEEESCBCSSSBCCCEEEEE---TTTTEEE--EECCCSSCCBSCEEEEETTEEEEEEEEC---SSCEEEEEEEE
T ss_pred             EEECCEEEEEeCcCCCccccceEEEC---CCCCcee--eCCCCCccccceEEEEECCEEEEEcCCC---CCccCceEEEE
Confidence            334665544321    1235689999   9999999  99877654   2222233  55554432   22345789999


Q ss_pred             EcCCCceEEcCCCCCceecCCCCeeeeCCcEEEEEeecCCC---ccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccE
Q 038993          169 SLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYGR---HDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANY  244 (327)
Q Consensus       169 s~~~~~Wr~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~---~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~  244 (327)
                      +..+++|+.++.+|...  .....+.++|.+|.++......   ...+..||+.+++|+.+ ++|...     ...   .
T Consensus       130 d~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-----~~~---~  199 (302)
T 2xn4_A          130 NIKSNEWFHVAPMNTRR--SSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRR-----SGA---G  199 (302)
T ss_dssp             ETTTTEEEEECCCSSCC--BSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCC-----BSC---E
T ss_pred             eCCCCeEeecCCCCCcc--cCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccc-----ccc---c
Confidence            99999999998776533  2234577899999998754311   34689999999999998 444332     122   5


Q ss_pred             EEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCCcccCCCcccccccCC---CceEEEEec
Q 038993          245 FGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSILEEQVISPSPEFYDYSLPFESLEP---PSLLRGWHP  321 (327)
Q Consensus       245 l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  321 (327)
                      ++.++ |+|+++......  ...-++|+++-.  ...|+++..++............+.++.+--.+.   -.-+..|||
T Consensus       200 ~~~~~-~~iyv~GG~~~~--~~~~~~~~yd~~--~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~  274 (302)
T 2xn4_A          200 VGVLN-NLLYAVGGHDGP--LVRKSVEVYDPT--TNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNP  274 (302)
T ss_dssp             EEEET-TEEEEECCBSSS--SBCCCEEEEETT--TTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEET
T ss_pred             EEEEC-CEEEEECCCCCC--cccceEEEEeCC--CCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcC
Confidence            66778 999999876542  113357777642  3679987644333221111122333333322221   234677887


Q ss_pred             CC
Q 038993          322 TS  323 (327)
Q Consensus       322 ~~  323 (327)
                      ++
T Consensus       275 ~~  276 (302)
T 2xn4_A          275 TT  276 (302)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=98.80  E-value=1e-06  Score=78.47  Aligned_cols=155  Identities=10%  Similarity=0.139  Sum_probs=104.5

Q ss_pred             EEEEEcCCccccceeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCCceecC
Q 038993          114 TLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIAR  188 (327)
Q Consensus       114 ~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~~~~~~  188 (327)
                      .+.++|   |.|++|.  .+|+.+..   .....++  ++.+..... ........+++|+..+++|+.+..+|....  
T Consensus        79 ~~~~~d---~~~~~W~--~~~~~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--  150 (318)
T 2woz_A           79 YFFQLD---NVSSEWV--GLPPLPSARCLFGLGEVDDKIYVVAGKDL-QTEASLDSVLCYDPVAAKWSEVKNLPIKVY--  150 (318)
T ss_dssp             EEEEEE---TTTTEEE--ECSCBSSCBCSCEEEEETTEEEEEEEEBT-TTCCEEEEEEEEETTTTEEEEECCCSSCEE--
T ss_pred             cEEEEe---CCCCcEE--ECCCCCccccccceEEECCEEEEEcCccC-CCCcccceEEEEeCCCCCEeECCCCCCccc--
Confidence            388999   9999999  99877654   2222223  555544321 123445789999999999999987775432  


Q ss_pred             CCCeeeeCCcEEEEEeecC--CCccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCC
Q 038993          189 DSPGVYASGSLHWIVMAEY--GRHDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRT  265 (327)
Q Consensus       189 ~~~~v~~~G~lywl~~~~~--~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~  265 (327)
                      ....+.++|.+|.++....  .....+..||+.+++|+.+ ++|...     ...   ..+.++ |+|+++......  .
T Consensus       151 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-----~~~---~~~~~~-~~iyv~GG~~~~--~  219 (318)
T 2woz_A          151 GHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR-----SMF---GVAIHK-GKIVIAGGVTED--G  219 (318)
T ss_dssp             SCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCC-----BSC---EEEEET-TEEEEEEEEETT--E
T ss_pred             ccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCc-----ccc---eEEEEC-CEEEEEcCcCCC--C
Confidence            2346778999999987532  2234699999999999998 444332     122   556778 999999876542  1


Q ss_pred             CeEEEEEEeeCCCCCCeEEEEEEc
Q 038993          266 PLSHVWVMTEYGVKDSWTKLFSIL  289 (327)
Q Consensus       266 ~~l~iW~l~~~~~~~~W~~~~~i~  289 (327)
                      ..-++|+++-.  ..+|+++..++
T Consensus       220 ~~~~~~~yd~~--~~~W~~~~~~p  241 (318)
T 2woz_A          220 LSASVEAFDLK--TNKWEVMTEFP  241 (318)
T ss_dssp             EEEEEEEEETT--TCCEEECCCCS
T ss_pred             ccceEEEEECC--CCeEEECCCCC
Confidence            13467777642  36799875443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.79  E-value=4e-07  Score=80.27  Aligned_cols=189  Identities=13%  Similarity=0.141  Sum_probs=115.8

Q ss_pred             CCEEEEEcCCccccce---eeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCC
Q 038993          112 PQTLAIWTHLRESTAF---YRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPP  183 (327)
Q Consensus       112 ~~~~~V~N~~~P~T~~---~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~  183 (327)
                      ...+.++|   |.|++   |.  .+|+.+..   .....++  ++.+...   ........+++|+..+++|+.++.+|.
T Consensus        77 ~~~~~~~d---~~~~~~~~W~--~~~~~p~~r~~~~~~~~~~~lyv~GG~---~~~~~~~~~~~~d~~~~~W~~~~~~p~  148 (301)
T 2vpj_A           77 LSSVECLD---YTADEDGVWY--SVAPMNVRRGLAGATTLGDMIYVSGGF---DGSRRHTSMERYDPNIDQWSMLGDMQT  148 (301)
T ss_dssp             CCCEEEEE---TTCCTTCCCE--EECCCSSCCBSCEEEEETTEEEEECCB---CSSCBCCEEEEEETTTTEEEEEEECSS
T ss_pred             CceEEEEE---CCCCCCCeeE--ECCCCCCCccceeEEEECCEEEEEccc---CCCcccceEEEEcCCCCeEEECCCCCC
Confidence            35789999   99999   99  98877654   2222222  4443321   222345789999999999999977664


Q ss_pred             ceecCCCCeeeeCCcEEEEEeecC-CCccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCC
Q 038993          184 CYIARDSPGVYASGSLHWIVMAEY-GRHDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGG  261 (327)
Q Consensus       184 ~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~  261 (327)
                      ..  .....+.++|.+|.++.... .....+..||+++++|+.+ ++|...     ...   .++.++ ++|+++.....
T Consensus       149 ~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----~~~---~~~~~~-~~i~v~GG~~~  217 (301)
T 2vpj_A          149 AR--EGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKR-----SGA---GVALLN-DHIYVVGGFDG  217 (301)
T ss_dssp             CC--BSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCC-----BSC---EEEEET-TEEEEECCBCS
T ss_pred             Cc--ccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccc-----ccc---eEEEEC-CEEEEEeCCCC
Confidence            33  22346778999999986543 2234699999999999998 444432     122   566777 99999987654


Q ss_pred             CcCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCCcccCCCcccccccCCC---ceEEEEecCC
Q 038993          262 GYRTPLSHVWVMTEYGVKDSWTKLFSILEEQVISPSPEFYDYSLPFESLEPP---SLLRGWHPTS  323 (327)
Q Consensus       262 ~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  323 (327)
                      ..  ..-++|+++-.  ..+|+++..++............+.++.+-..+..   .-+..||+++
T Consensus       218 ~~--~~~~v~~yd~~--~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          218 TA--HLSSVEAYNIR--TDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPII  278 (301)
T ss_dssp             SS--BCCCEEEEETT--TTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred             Cc--ccceEEEEeCC--CCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCC
Confidence            31  13456666642  36799875443322211111223333333322221   4567788765

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.69  E-value=6.7e-07  Score=79.32  Aligned_cols=153  Identities=12%  Similarity=0.113  Sum_probs=102.1

Q ss_pred             CEEEEEcCCccccceeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCCceec
Q 038993          113 QTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIA  187 (327)
Q Consensus       113 ~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~~~~~  187 (327)
                      ..+.++|   |.|++|.  .+|+++..   .....++  ++.+....   .......+++|+..+++|+.+..+|.... 
T Consensus        90 ~~~~~~d---~~~~~W~--~~~~~p~~r~~~~~~~~~~~iyv~GG~~---~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-  160 (308)
T 1zgk_A           90 SALDCYN---PMTNQWS--PCAPMSVPRNRIGVGVIDGHIYAVGGSH---GCIHHNSVERYEPERDEWHLVAPMLTRRI-  160 (308)
T ss_dssp             CCEEEEE---TTTTEEE--ECCCCSSCCBTCEEEEETTEEEEECCEE---TTEECCCEEEEETTTTEEEECCCCSSCCB-
T ss_pred             ceEEEEC---CCCCeEe--ECCCCCcCccccEEEEECCEEEEEcCCC---CCcccccEEEECCCCCeEeECCCCCcccc-
Confidence            4689999   9999999  99877654   2222222  44443221   12235679999999999999987764332 


Q ss_pred             CCCCeeeeCCcEEEEEeecC-CCccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCC
Q 038993          188 RDSPGVYASGSLHWIVMAEY-GRHDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRT  265 (327)
Q Consensus       188 ~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~  265 (327)
                       ....+.++|.+|.++.... .....+..||+.+++|+.+ ++|...     ...   ..+.++ ++|+++......  .
T Consensus       161 -~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-----~~~---~~~~~~-~~iyv~GG~~~~--~  228 (308)
T 1zgk_A          161 -GVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIR-----SGA---GVCVLH-NCIYAAGGYDGQ--D  228 (308)
T ss_dssp             -SCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCC-----BSC---EEEEET-TEEEEECCBCSS--S
T ss_pred             -ceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcc-----ccc---eEEEEC-CEEEEEeCCCCC--C
Confidence             2346778999999987543 1235699999999999988 444322     122   556677 999999876542  1


Q ss_pred             CeEEEEEEeeCCCCCCeEEEEEE
Q 038993          266 PLSHVWVMTEYGVKDSWTKLFSI  288 (327)
Q Consensus       266 ~~l~iW~l~~~~~~~~W~~~~~i  288 (327)
                      ..-++|+++-.  ..+|+++..+
T Consensus       229 ~~~~v~~yd~~--~~~W~~~~~~  249 (308)
T 1zgk_A          229 QLNSVERYDVE--TETWTFVAPM  249 (308)
T ss_dssp             BCCCEEEEETT--TTEEEECCCC
T ss_pred             ccceEEEEeCC--CCcEEECCCC
Confidence            24567777642  3679986543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.64  E-value=9.7e-07  Score=78.03  Aligned_cols=155  Identities=13%  Similarity=0.163  Sum_probs=102.9

Q ss_pred             CCEEEEEcCCccccceeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCCcee
Q 038993          112 PQTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYI  186 (327)
Q Consensus       112 ~~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~~~~  186 (327)
                      ...+.++|   |.+++|.  .+++++..   .....++  ++.+...   . ......+++|+..+++|+.+..+|....
T Consensus        23 ~~~~~~~d---~~~~~W~--~~~~~p~~r~~~~~~~~~~~lyv~GG~---~-~~~~~~~~~~d~~~~~W~~~~~~p~~r~   93 (306)
T 3ii7_A           23 PQSCRYFN---PKDYSWT--DIRCPFEKRRDAACVFWDNVVYILGGS---Q-LFPIKRMDCYNVVKDSWYSKLGPPTPRD   93 (306)
T ss_dssp             TTSEEEEE---TTTTEEE--ECCCCSCCCBSCEEEEETTEEEEECCB---S-SSBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred             CceEEEec---CCCCCEe--cCCCCCcccceeEEEEECCEEEEEeCC---C-CCCcceEEEEeCCCCeEEECCCCCcccc
Confidence            45688999   9999999  99877654   2222222  3333221   1 3456789999999999999987764332


Q ss_pred             cCCCCeeeeCCcEEEEEeecC--CCccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCc
Q 038993          187 ARDSPGVYASGSLHWIVMAEY--GRHDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGY  263 (327)
Q Consensus       187 ~~~~~~v~~~G~lywl~~~~~--~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~  263 (327)
                        ....+.++|.+|.++....  .....+..||+.+.+|+.+ ++|...     ...   ..+.++ |+|+++.......
T Consensus        94 --~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----~~~---~~~~~~-~~iyv~GG~~~~~  162 (306)
T 3ii7_A           94 --SLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQR-----CSH---GMVEAN-GLIYVCGGSLGNN  162 (306)
T ss_dssp             --SCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCC-----BSC---EEEEET-TEEEEECCEESCT
T ss_pred             --ceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCc-----cee---EEEEEC-CEEEEECCCCCCC
Confidence              2345678999999987642  2345699999999999998 445432     122   556677 9999998754321


Q ss_pred             C--CCeEEEEEEeeCCCCCCeEEEEEE
Q 038993          264 R--TPLSHVWVMTEYGVKDSWTKLFSI  288 (327)
Q Consensus       264 ~--~~~l~iW~l~~~~~~~~W~~~~~i  288 (327)
                      .  ...-++|+++-.  ..+|+++..+
T Consensus       163 ~~~~~~~~~~~yd~~--~~~W~~~~~~  187 (306)
T 3ii7_A          163 VSGRVLNSCEVYDPA--TETWTELCPM  187 (306)
T ss_dssp             TTCEECCCEEEEETT--TTEEEEECCC
T ss_pred             CcccccceEEEeCCC--CCeEEECCCc
Confidence            1  003456776642  3689987543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.62  E-value=2e-05  Score=72.98  Aligned_cols=51  Identities=24%  Similarity=0.238  Sum_probs=45.7

Q ss_pred             CCCCCCCcHHHHHHHHhcCCcchhhhheeccccchhhcCChhhHHHHhhcc
Q 038993            1 MDDRDPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRN   51 (327)
Q Consensus         1 m~~~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~~~~~~~   51 (327)
                      ++.+..||+|++.+||+.|++++|.++.+|||+|+.++.++.+.+......
T Consensus        16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~   66 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEE   66 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTT
T ss_pred             CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeec
Confidence            356788999999999999999999999999999999999999888776543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.60  E-value=1e-06  Score=77.71  Aligned_cols=190  Identities=13%  Similarity=0.175  Sum_probs=113.6

Q ss_pred             CEEEEEcCCccccceeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCCceec
Q 038993          113 QTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIA  187 (327)
Q Consensus       113 ~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~~~~~  187 (327)
                      ..+.++|   |.+++|.  .++..+..   .....++  ++.+...   +.......+++|+..+++|+.++.+|.... 
T Consensus        30 ~~~~~~d---~~~~~W~--~~~~~p~~r~~~~~~~~~~~lyv~GG~---~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-  100 (302)
T 2xn4_A           30 RSVECYD---FKEERWH--QVAELPSRRCRAGMVYMAGLVFAVGGF---NGSLRVRTVDSYDPVKDQWTSVANMRDRRS-  100 (302)
T ss_dssp             CCEEEEE---TTTTEEE--EECCCSSCCBSCEEEEETTEEEEESCB---CSSSBCCCEEEEETTTTEEEEECCCSSCCB-
T ss_pred             CcEEEEc---CcCCcEe--EcccCCcccccceEEEECCEEEEEeCc---CCCccccceEEECCCCCceeeCCCCCcccc-
Confidence            4588999   9999999  98776654   2222222  3333221   222345679999999999999987765332 


Q ss_pred             CCCCeeeeCCcEEEEEeecC-CCccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCC
Q 038993          188 RDSPGVYASGSLHWIVMAEY-GRHDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRT  265 (327)
Q Consensus       188 ~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~  265 (327)
                       ....+.++|.+|.++.... .....+..||+.+.+|+.+ ++|...     ...   ..+.++ |+|+++.........
T Consensus       101 -~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----~~~---~~~~~~-~~iyv~GG~~~~~~~  170 (302)
T 2xn4_A          101 -TLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRR-----SSV---GVGVVG-GLLYAVGGYDVASRQ  170 (302)
T ss_dssp             -SCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCC-----BSC---EEEEET-TEEEEECCEETTTTE
T ss_pred             -ceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcc-----cCc---eEEEEC-CEEEEEeCCCCCCCc
Confidence             2346778999999987643 2224688999999999998 444332     122   556677 999999865432101


Q ss_pred             CeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCCcccCCCcccccccCC---CceEEEEecCC
Q 038993          266 PLSHVWVMTEYGVKDSWTKLFSILEEQVISPSPEFYDYSLPFESLEP---PSLLRGWHPTS  323 (327)
Q Consensus       266 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  323 (327)
                      ..-++|+.+-.  ..+|+++..++............+.++.+--.+.   -.-+..||+++
T Consensus       171 ~~~~~~~yd~~--~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~  229 (302)
T 2xn4_A          171 CLSTVECYNAT--TNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTT  229 (302)
T ss_dssp             ECCCEEEEETT--TTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTT
T ss_pred             cccEEEEEeCC--CCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCC
Confidence            12346776642  3689987544332211111122333333322221   23467777765

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.60  E-value=1.8e-06  Score=76.71  Aligned_cols=154  Identities=12%  Similarity=0.161  Sum_probs=103.7

Q ss_pred             CCEEEEEcCCccccceeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCCcee
Q 038993          112 PQTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYI  186 (327)
Q Consensus       112 ~~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~~~~  186 (327)
                      ...+.++|   |.|++|.  .+++.+..   .....++  ++.+....  ........+++|+..+++|+.+..+|... 
T Consensus       116 ~~~~~~~d---~~~~~W~--~~~~~p~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-  187 (315)
T 4asc_A          116 LDSVMCYD---RLSFKWG--ESDPLPYVVYGHTVLSHMDLVYVIGGKG--SDRKCLNKMCVYDPKKFEWKELAPMQTAR-  187 (315)
T ss_dssp             CCCEEEEE---TTTTEEE--ECCCCSSCCBSCEEEEETTEEEEECCBC--TTSCBCCCEEEEETTTTEEEECCCCSSCC-
T ss_pred             cceEEEEC---CCCCcEe--ECCCCCCcccceeEEEECCEEEEEeCCC--CCCcccceEEEEeCCCCeEEECCCCCCch-
Confidence            35689999   9999999  99876654   2222233  44443221  22345678999999999999998776533 


Q ss_pred             cCCCCeeeeCCcEEEEEeecC-CCccEEEEEeCCCceeeeec-CCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCc-
Q 038993          187 ARDSPGVYASGSLHWIVMAEY-GRHDFILALDLSDEAYKELP-LPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGY-  263 (327)
Q Consensus       187 ~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~-  263 (327)
                       .....+.++|.+|.++.... .....+..||+++++|+.+. +|...     ...   .++.++ |+|+++....... 
T Consensus       188 -~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-----~~~---~~~~~~-~~l~v~GG~~~~~~  257 (315)
T 4asc_A          188 -SLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQER-----SSL---SLVSLV-GTLYAIGGFATLET  257 (315)
T ss_dssp             -BSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCC-----BSC---EEEEET-TEEEEEEEEEEEEC
T ss_pred             -hceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcc-----cce---eEEEEC-CEEEEECCccccCc
Confidence             22346778999999987653 12346899999999999984 44332     122   566778 9999998763210 


Q ss_pred             --C----CCeEEEEEEeeCCCCCCeEEE
Q 038993          264 --R----TPLSHVWVMTEYGVKDSWTKL  285 (327)
Q Consensus       264 --~----~~~l~iW~l~~~~~~~~W~~~  285 (327)
                        +    ...-+||+.+-.  ..+|+++
T Consensus       258 ~~~~~~~~~~~~v~~yd~~--~~~W~~~  283 (315)
T 4asc_A          258 ESGELVPTELNDIWRYNEE--EKKWEGV  283 (315)
T ss_dssp             TTSCEEEEEEEEEEEEETT--TTEEEEE
T ss_pred             CCccccccccCcEEEecCC--CChhhhh
Confidence              0    123568888752  3689988

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.59  E-value=1.9e-06  Score=75.91  Aligned_cols=154  Identities=12%  Similarity=0.121  Sum_probs=102.0

Q ss_pred             CCEEEEEcCCccccceeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCc---eEEcCCCCC
Q 038993          112 PQTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNS---WKRIQDIPP  183 (327)
Q Consensus       112 ~~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~---Wr~~~~~p~  183 (327)
                      ...+.++|   |.|++|.  .+|..+..   .....++  ++.+...   .+......+++|+..++.   |+.+..+|.
T Consensus        30 ~~~~~~~d---~~~~~W~--~~~~~p~~r~~~~~~~~~~~l~v~GG~---~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~  101 (301)
T 2vpj_A           30 IDVVEKYD---PKTQEWS--FLPSITRKRRYVASVSLHDRIYVIGGY---DGRSRLSSVECLDYTADEDGVWYSVAPMNV  101 (301)
T ss_dssp             CCCEEEEE---TTTTEEE--ECCCCSSCCBSCEEEEETTEEEEECCB---CSSCBCCCEEEEETTCCTTCCCEEECCCSS
T ss_pred             eeEEEEEc---CCCCeEE--eCCCCChhhccccEEEECCEEEEEcCC---CCCccCceEEEEECCCCCCCeeEECCCCCC
Confidence            35689999   9999999  99876654   1222222  3333221   223445689999999999   999987765


Q ss_pred             ceecCCCCeeeeCCcEEEEEeecC-CCccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCC
Q 038993          184 CYIARDSPGVYASGSLHWIVMAEY-GRHDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGG  261 (327)
Q Consensus       184 ~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~  261 (327)
                      ..  .....+.++|.+|.++.... .....+..||+.+.+|+.+ ++|...     ...   ..+.++ |+|+++.....
T Consensus       102 ~r--~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----~~~---~~~~~~-~~iyv~GG~~~  170 (301)
T 2vpj_A          102 RR--GLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAR-----EGA---GLVVAS-GVIYCLGGYDG  170 (301)
T ss_dssp             CC--BSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCC-----BSC---EEEEET-TEEEEECCBCS
T ss_pred             Cc--cceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCc-----ccc---eEEEEC-CEEEEECCCCC
Confidence            33  22346778999999987543 2234699999999999998 455332     122   556677 99999987654


Q ss_pred             CcCCCeEEEEEEeeCCCCCCeEEEEEE
Q 038993          262 GYRTPLSHVWVMTEYGVKDSWTKLFSI  288 (327)
Q Consensus       262 ~~~~~~l~iW~l~~~~~~~~W~~~~~i  288 (327)
                      .  ...-++|+++-.  ...|+++..+
T Consensus       171 ~--~~~~~~~~~d~~--~~~W~~~~~~  193 (301)
T 2vpj_A          171 L--NILNSVEKYDPH--TGHWTNVTPM  193 (301)
T ss_dssp             S--CBCCCEEEEETT--TTEEEEECCC
T ss_pred             C--cccceEEEEeCC--CCcEEeCCCC
Confidence            2  123456776642  3689987543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.57  E-value=3.2e-06  Score=74.90  Aligned_cols=170  Identities=12%  Similarity=0.163  Sum_probs=110.2

Q ss_pred             eccCCcEEeeec----CCCCEEEEEcCCccccceeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEE
Q 038993           98 GCCNGLLCIATN----RLPQTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVY  168 (327)
Q Consensus        98 ~sc~GLlcl~~~----~~~~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vy  168 (327)
                      +..+|-|.+...    .....+.++|   |.|.+|.  .+++.+..   .....++  ++.+...   +.......+++|
T Consensus       118 ~~~~~~iyv~GG~~~~~~~~~~~~yd---~~~~~W~--~~~~~p~~r~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~y  189 (308)
T 1zgk_A          118 GVIDGHIYAVGGSHGCIHHNSVERYE---PERDEWH--LVAPMLTRRIGVGVAVLNRLLYAVGGF---DGTNRLNSAECY  189 (308)
T ss_dssp             EEETTEEEEECCEETTEECCCEEEEE---TTTTEEE--ECCCCSSCCBSCEEEEETTEEEEECCB---CSSCBCCCEEEE
T ss_pred             EEECCEEEEEcCCCCCcccccEEEEC---CCCCeEe--ECCCCCccccceEEEEECCEEEEEeCC---CCCCcCceEEEE
Confidence            344666544321    1235689999   9999999  99876654   2222222  4433322   222236789999


Q ss_pred             EcCCCceEEcCCCCCceecCCCCeeeeCCcEEEEEeecC-CCccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccEEE
Q 038993          169 SLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEY-GRHDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANYFG  246 (327)
Q Consensus       169 s~~~~~Wr~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l~  246 (327)
                      +..+++|+.+..+|....  ....+.++|.+|.++.... .....+..||+++++|+.+ ++|...     ...   .++
T Consensus       190 d~~~~~W~~~~~~p~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r-----~~~---~~~  259 (308)
T 1zgk_A          190 YPERNEWRMITAMNTIRS--GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRR-----SAL---GIT  259 (308)
T ss_dssp             ETTTTEEEECCCCSSCCB--SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCC-----BSC---EEE
T ss_pred             eCCCCeEeeCCCCCCccc--cceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCc-----cce---EEE
Confidence            999999999987765332  2346778999999986543 2235699999999999998 444322     122   556


Q ss_pred             EeCCCcEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEEEEEEcC
Q 038993          247 VLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSILE  290 (327)
Q Consensus       247 ~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~  290 (327)
                      .++ |+|+++......  ...-+||+++-.  ..+|+++..++.
T Consensus       260 ~~~-~~i~v~GG~~~~--~~~~~v~~yd~~--~~~W~~~~~~p~  298 (308)
T 1zgk_A          260 VHQ-GRIYVLGGYDGH--TFLDSVECYDPD--TDTWSEVTRMTS  298 (308)
T ss_dssp             EET-TEEEEECCBCSS--CBCCEEEEEETT--TTEEEEEEECSS
T ss_pred             EEC-CEEEEEcCcCCC--cccceEEEEcCC--CCEEeecCCCCC
Confidence            677 999999876542  224577887752  368999865543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.52  E-value=1.9e-06  Score=77.94  Aligned_cols=176  Identities=14%  Similarity=0.099  Sum_probs=106.8

Q ss_pred             eccCCcEEeeecCCCCEEEEEcCCccc--cceeeccccCCCC-CC---CceEEEE--EEEEEEEeC--CCCCCCccEEEE
Q 038993           98 GCCNGLLCIATNRLPQTLAIWTHLRES--TAFYRRQRLPWIP-KR---LVAFFMG--LVRIARRSG--DACFGGAAEVKV  167 (327)
Q Consensus        98 ~sc~GLlcl~~~~~~~~~~V~N~~~P~--T~~~~~~~LP~~~-~~---~~~~gfg--vv~v~~~~~--~~~~~~~~~~~V  167 (327)
                      +..+|-|.+........++++|   |.  +++|.  .+|+.+ ..   .....++  ++.+.....  .........+++
T Consensus        16 ~~~~~~iyv~GG~~~~~~~~~d---~~~~~~~W~--~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~   90 (357)
T 2uvk_A           16 AIDNDTVYIGLGSAGTAWYKLD---TQAKDKKWT--ALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHK   90 (357)
T ss_dssp             EEETTEEEEECGGGTTCEEEEE---TTSSSCCEE--ECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEE
T ss_pred             EEECCEEEEEeCcCCCeEEEEc---cccCCCCee--ECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEE
Confidence            3336666554332345789999   97  59999  998866 33   2223333  444433211  111233567999


Q ss_pred             EEcCCCceEEcCCCCCceecCCCCeeeeCCcEEEEEeecCC-----------------------------------CccE
Q 038993          168 YSLARNSWKRIQDIPPCYIARDSPGVYASGSLHWIVMAEYG-----------------------------------RHDF  212 (327)
Q Consensus       168 ys~~~~~Wr~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~-----------------------------------~~~~  212 (327)
                      |+..+++|+.+..+++... .....+.++|.+|.++.....                                   ....
T Consensus        91 yd~~~~~W~~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (357)
T 2uvk_A           91 YNPKTNSWVKLMSHAPMGM-AGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKF  169 (357)
T ss_dssp             EETTTTEEEECSCCCSSCC-SSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCE
T ss_pred             EeCCCCcEEECCCCCCccc-ccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCccc
Confidence            9999999999987662111 122246689999999875320                                   1247


Q ss_pred             EEEEeCCCceeeee-cCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEEEEEE
Q 038993          213 ILALDLSDEAYKEL-PLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFSI  288 (327)
Q Consensus       213 il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i  288 (327)
                      +..||+.+.+|+.+ ++|....    ...   .++..+ ++|+++...... ....-++|.++-......|+++..+
T Consensus       170 v~~yd~~~~~W~~~~~~p~~~~----~~~---~~~~~~-~~iyv~GG~~~~-~~~~~~v~~~d~d~~~~~W~~~~~~  237 (357)
T 2uvk_A          170 LLSFDPSTQQWSYAGESPWYGT----AGA---AVVNKG-DKTWLINGEAKP-GLRTDAVFELDFTGNNLKWNKLAPV  237 (357)
T ss_dssp             EEEEETTTTEEEEEEECSSCCC----BSC---EEEEET-TEEEEECCEEET-TEECCCEEEEECC---CEEEECCCS
T ss_pred             EEEEeCCCCcEEECCCCCCCCc----ccc---cEEEEC-CEEEEEeeecCC-CcccCceEEEEecCCCCcEEecCCC
Confidence            99999999999998 5554321    112   566778 999999764321 1123456766521124679987544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.50  E-value=4.5e-05  Score=70.86  Aligned_cols=45  Identities=24%  Similarity=0.409  Sum_probs=39.6

Q ss_pred             CCCCcHHHHHHHHhcCCcchhhhheeccccchhhcCC-hhhHHHHh
Q 038993            4 RDPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDG-PDFIKLQL   48 (327)
Q Consensus         4 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~-~~F~~~~~   48 (327)
                      +..||+||+.+||+.||+++|+++.+|||+|+.++.+ +...+.+.
T Consensus        15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~   60 (464)
T 3v7d_B           15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL   60 (464)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred             hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4569999999999999999999999999999999998 66555443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=98.49  E-value=6.8e-06  Score=73.06  Aligned_cols=153  Identities=12%  Similarity=0.198  Sum_probs=101.9

Q ss_pred             CEEEEEcCCccccceeeccccCCCCCC---CceEEEE--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCCceec
Q 038993          113 QTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIA  187 (327)
Q Consensus       113 ~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~~~~~  187 (327)
                      ..+.++|   |.|.+|.  .+++.+..   .....++  ++.+....  ........+++|+..+++|+.++.+|.... 
T Consensus       127 ~~~~~yd---~~~~~W~--~~~~~p~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-  198 (318)
T 2woz_A          127 DSVLCYD---PVAAKWS--EVKNLPIKVYGHNVISHNGMIYCLGGKT--DDKKCTNRVFIYNPKKGDWKDLAPMKTPRS-  198 (318)
T ss_dssp             EEEEEEE---TTTTEEE--EECCCSSCEESCEEEEETTEEEEECCEE--SSSCBCCCEEEEETTTTEEEEECCCSSCCB-
T ss_pred             ceEEEEe---CCCCCEe--ECCCCCCcccccEEEEECCEEEEEcCCC--CCCCccceEEEEcCCCCEEEECCCCCCCcc-
Confidence            4688999   9999999  98876654   2222222  44443321  122345679999999999999987664332 


Q ss_pred             CCCCeeeeCCcEEEEEeecCC-CccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCc--
Q 038993          188 RDSPGVYASGSLHWIVMAEYG-RHDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGY--  263 (327)
Q Consensus       188 ~~~~~v~~~G~lywl~~~~~~-~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~--  263 (327)
                       ....+.++|.+|.++..... ....+..||+++++|+.+ ++|...     ...   .++.++ |+|+++.......  
T Consensus       199 -~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-----~~~---~~~~~~-~~i~v~GG~~~~~~~  268 (318)
T 2woz_A          199 -MFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQER-----SSI---SLVSLA-GSLYAIGGFAMIQLE  268 (318)
T ss_dssp             -SCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCC-----BSC---EEEEET-TEEEEECCBCCBC--
T ss_pred             -cceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcc-----cce---EEEEEC-CEEEEECCeeccCCC
Confidence             23357789999999875431 124688999999999998 455432     122   567778 9999997754310  


Q ss_pred             -----CCCeEEEEEEeeCCCCCCeEEE
Q 038993          264 -----RTPLSHVWVMTEYGVKDSWTKL  285 (327)
Q Consensus       264 -----~~~~l~iW~l~~~~~~~~W~~~  285 (327)
                           ....-++|+.+-.  ..+|+++
T Consensus       269 ~~~~~~~~~~~v~~yd~~--~~~W~~~  293 (318)
T 2woz_A          269 SKEFAPTEVNDIWKYEDD--KKEWAGM  293 (318)
T ss_dssp             --CCBCCBCCCEEEEETT--TTEEEEE
T ss_pred             CceeccceeeeEEEEeCC--CCEehhh
Confidence                 0124578888752  3689988

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.26  E-value=2.5e-05  Score=72.32  Aligned_cols=47  Identities=30%  Similarity=0.400  Sum_probs=41.9

Q ss_pred             CCCCcHH----HHHHHHhcCCcchhhhheeccccchhhcCChhhHHHHhhc
Q 038993            4 RDPLPLH----IIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSR   50 (327)
Q Consensus         4 ~~~LP~D----ll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~~~~~~   50 (327)
                      +..||+|    |+..||+.|++++|.++.+|||+|+.++.++.+.+....+
T Consensus        11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~   61 (435)
T 1p22_A           11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER   61 (435)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence            4569999    9999999999999999999999999999988877766554

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.01  E-value=1.1e-06  Score=76.44  Aligned_cols=49  Identities=24%  Similarity=0.365  Sum_probs=46.0

Q ss_pred             CCCCcHHHHHHHHhcCCcchhhhheeccccchhhcCChhhHHHHhhccC
Q 038993            4 RDPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQ   52 (327)
Q Consensus         4 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~~~~~~~~   52 (327)
                      ++.||+|++..||+.|++++|+++.+|||+||.+.+++...+.+..+..
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~   53 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDL   53 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSG
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccC
Confidence            4579999999999999999999999999999999999999999988764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=98.00  E-value=0.00018  Score=71.08  Aligned_cols=156  Identities=12%  Similarity=0.079  Sum_probs=95.6

Q ss_pred             CCEEEEEcCCccccceeeccccC-C-----CC-CC--CceEEE--E--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEc
Q 038993          112 PQTLAIWTHLRESTAFYRRQRLP-W-----IP-KR--LVAFFM--G--LVRIARRSGDACFGGAAEVKVYSLARNSWKRI  178 (327)
Q Consensus       112 ~~~~~V~N~~~P~T~~~~~~~LP-~-----~~-~~--~~~~gf--g--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~  178 (327)
                      ...+.++|   |.|++|.  .++ +     .+ .+  +....+  +  ++.+....  ........+++|+..+++|+.+
T Consensus       411 ~~~v~~yd---~~~~~W~--~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~--~~~~~~~dv~~yd~~t~~W~~~  483 (695)
T 2zwa_A          411 VNEILQLS---IHYDKID--MKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRK--APHQGLSDNWIFDMKTREWSMI  483 (695)
T ss_dssp             CCCEEEEE---ECSSCEE--EEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBS--STTCBCCCCEEEETTTTEEEEC
T ss_pred             cCcEEEEE---CCCCeEE--EeccCCCCCCCCccccceEEEEEccCCEEEEEcCCC--CCCCccccEEEEeCCCCcEEEC
Confidence            35689999   9999999  887 4     12 22  222333  3  33332221  1112356799999999999999


Q ss_pred             CCCCCceecCCCCeeee-CCcEEEEEeecCCCccEEEEEeCCCceeeeec----CCCCCCcCCcceeeccEEEEeC--CC
Q 038993          179 QDIPPCYIARDSPGVYA-SGSLHWIVMAEYGRHDFILALDLSDEAYKELP----LPPPVLLETGCRVRANYFGVLD--NG  251 (327)
Q Consensus       179 ~~~p~~~~~~~~~~v~~-~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~----lP~~~~~~~~~~~~~~~l~~~~--~g  251 (327)
                      ..+|....  ....+.+ +|.+|.++......  .+..||+.+.+|+.+.    +|....     ..   ..++++  +|
T Consensus       484 ~~~p~~R~--~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~-----~~---~a~v~~~~~~  551 (695)
T 2zwa_A          484 KSLSHTRF--RHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSL-----VS---AGLEFDPVSK  551 (695)
T ss_dssp             CCCSBCCB--SCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCC-----BS---CEEEEETTTT
T ss_pred             CCCCCCcc--cceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCccc-----ce---eEEEEeCCCC
Confidence            87775332  2234554 99999998775422  6999999999999885    343321     11   212222  27


Q ss_pred             cEEEEEecCCCcCCCeEEEEEEeeCCCCCC------eEEEEEE
Q 038993          252 CLCLVSNYGGGYRTPLSHVWVMTEYGVKDS------WTKLFSI  288 (327)
Q Consensus       252 ~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~------W~~~~~i  288 (327)
                      +|++++..........-++|+.+-..  ..      |+++...
T Consensus       552 ~iyv~GG~~~~~~~~~~~v~~yd~~~--~~w~~~~~W~~~~~~  592 (695)
T 2zwa_A          552 QGIILGGGFMDQTTVSDKAIIFKYDA--ENATEPITVIKKLQH  592 (695)
T ss_dssp             EEEEECCBCTTSSCBCCEEEEEEECT--TCSSCCEEEEEEEEC
T ss_pred             EEEEECCcCCCCCeeeCcEEEEEccC--CccccceEEEEcCCC
Confidence            89999876432112234566666422  34      8887663

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.99  E-value=8.1e-05  Score=67.01  Aligned_cols=156  Identities=10%  Similarity=-0.038  Sum_probs=93.8

Q ss_pred             CEEEEEcCCccccceeeccccCCCCCC--C--ceEEEE--EEEEEEEeCCCCCCCccEEEEEEc--CCCceEEcCCCCCc
Q 038993          113 QTLAIWTHLRESTAFYRRQRLPWIPKR--L--VAFFMG--LVRIARRSGDACFGGAAEVKVYSL--ARNSWKRIQDIPPC  184 (327)
Q Consensus       113 ~~~~V~N~~~P~T~~~~~~~LP~~~~~--~--~~~gfg--vv~v~~~~~~~~~~~~~~~~Vys~--~~~~Wr~~~~~p~~  184 (327)
                      ..+.++|   |.|.+|.  .+++.+..  .  ....++  ++.+.....  .......+++|+.  .++.|+.+..+|..
T Consensus       168 ~~v~~yd---~~~~~W~--~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~--~~~~~~~v~~~d~d~~~~~W~~~~~~~~~  240 (357)
T 2uvk_A          168 KFLLSFD---PSTQQWS--YAGESPWYGTAGAAVVNKGDKTWLINGEAK--PGLRTDAVFELDFTGNNLKWNKLAPVSSP  240 (357)
T ss_dssp             CEEEEEE---TTTTEEE--EEEECSSCCCBSCEEEEETTEEEEECCEEE--TTEECCCEEEEECC---CEEEECCCSSTT
T ss_pred             ccEEEEe---CCCCcEE--ECCCCCCCCcccccEEEECCEEEEEeeecC--CCcccCceEEEEecCCCCcEEecCCCCCC
Confidence            6899999   9999999  88765532  1  112222  444322211  1123456788887  88999999876533


Q ss_pred             eecCCCCeeeeCCcEEEEEeecCC------------------CccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccEE
Q 038993          185 YIARDSPGVYASGSLHWIVMAEYG------------------RHDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANYF  245 (327)
Q Consensus       185 ~~~~~~~~v~~~G~lywl~~~~~~------------------~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l  245 (327)
                      ........+.++|.+|.++.....                  ....+..||+++++|+.+ ++|....     ..   ..
T Consensus       241 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~---~~  312 (357)
T 2uvk_A          241 DGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRA-----YG---VS  312 (357)
T ss_dssp             TCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCB-----SS---EE
T ss_pred             cccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcc-----cc---ee
Confidence            222223367889999999875311                  113578999999999998 5664431     12   45


Q ss_pred             EEeCCCcEEEEEecCCCcCCCeEEEEEEeeCCCCCCeEEEEE
Q 038993          246 GVLDNGCLCLVSNYGGGYRTPLSHVWVMTEYGVKDSWTKLFS  287 (327)
Q Consensus       246 ~~~~~g~L~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~  287 (327)
                      +.++ |+|+++...... +...-+||+++=.  .++|.....
T Consensus       313 ~~~~-~~i~v~GG~~~~-~~~~~~v~~l~~~--~~~~~~~~~  350 (357)
T 2uvk_A          313 LPWN-NSLLIIGGETAG-GKAVTDSVLITVK--DNKVTVQNL  350 (357)
T ss_dssp             EEET-TEEEEEEEECGG-GCEEEEEEEEEC---CCSCEEEC-
T ss_pred             EEeC-CEEEEEeeeCCC-CCEeeeEEEEEEc--CcEeEeeec
Confidence            6677 999999987643 1224578877643  256877543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.62  E-value=1.7e-05  Score=70.79  Aligned_cols=42  Identities=29%  Similarity=0.454  Sum_probs=38.4

Q ss_pred             CCCCCCcHHHHHHHHhcCCcchhhhheeccccchhhcCChhh
Q 038993            2 DDRDPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDF   43 (327)
Q Consensus         2 ~~~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F   43 (327)
                      ..+..||+|++.+||.+|+.+++.+++.|||+|+.++.++..
T Consensus         7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~   48 (336)
T 2ast_B            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   48 (336)
T ss_dssp             CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred             CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence            467899999999999999999999999999999999877653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.37  E-value=0.0051  Score=60.17  Aligned_cols=124  Identities=10%  Similarity=0.007  Sum_probs=76.9

Q ss_pred             EEeccCCcEEeeecCCCCEEEEEcCCccccceeeccccCCCCCC---CceEEE-E--EEEEEEEeCCCCCCCccEEEEEE
Q 038993           96 VVGCCNGLLCIATNRLPQTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFM-G--LVRIARRSGDACFGGAAEVKVYS  169 (327)
Q Consensus        96 ~~~sc~GLlcl~~~~~~~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gf-g--vv~v~~~~~~~~~~~~~~~~Vys  169 (327)
                      .....+|-|.+........+.++|   |.|++|.  .+|+++..   .....+ +  ++.+...  .++......+++|+
T Consensus       248 ~~~~~~g~lyv~GG~~~~~v~~yd---~~t~~W~--~~~~~~~~R~~~s~~~~~dg~iyv~GG~--~~~~~~~~~~e~yd  320 (656)
T 1k3i_A          248 ISMDGNGQIVVTGGNDAKKTSLYD---SSSDSWI--PGPDMQVARGYQSSATMSDGRVFTIGGS--WSGGVFEKNGEVYS  320 (656)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEE---GGGTEEE--ECCCCSSCCSSCEEEECTTSCEEEECCC--CCSSSCCCCEEEEE
T ss_pred             ccCCCCCCEEEeCCCCCCceEEec---CcCCcee--ECCCCCccccccceEEecCCeEEEEeCc--ccCCcccccceEeC
Confidence            344467777666533445799999   9999999  99876654   222233 2  4444321  12223457899999


Q ss_pred             cCCCceEEcCCCCCce-e-cCCCCeeeeCCcEEEEEeecC-----CCccEEEEEeCCCceeeee
Q 038993          170 LARNSWKRIQDIPPCY-I-ARDSPGVYASGSLHWIVMAEY-----GRHDFILALDLSDEAYKEL  226 (327)
Q Consensus       170 ~~~~~Wr~~~~~p~~~-~-~~~~~~v~~~G~lywl~~~~~-----~~~~~il~fD~~~e~~~~i  226 (327)
                      ..+++|+.+....... . ......+..++.+|.+...+.     .....+..||++++.|...
T Consensus       321 ~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~  384 (656)
T 1k3i_A          321 PSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS  384 (656)
T ss_dssp             TTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEE
T ss_pred             CCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeec
Confidence            9999999985322111 1 111223447888888875432     1234689999999998643

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.33  E-value=0.0051  Score=60.70  Aligned_cols=149  Identities=9%  Similarity=0.004  Sum_probs=92.4

Q ss_pred             CEEEEEcCCccccceeeccccCCCCCC---CceEEE-E--EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCC---CCC
Q 038993          113 QTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFM-G--LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQD---IPP  183 (327)
Q Consensus       113 ~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gf-g--vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~---~p~  183 (327)
                      ..+.++|   |.|.+|.  .+++++..   +....+ +  ++.+...   +. ..  .+++|+..++.|+.+..   +|.
T Consensus       468 ~dv~~yd---~~t~~W~--~~~~~p~~R~~h~~~~~~~~~iyv~GG~---~~-~~--~v~~yd~~t~~W~~~~~~g~~p~  536 (695)
T 2zwa_A          468 SDNWIFD---MKTREWS--MIKSLSHTRFRHSACSLPDGNVLILGGV---TE-GP--AMLLYNVTEEIFKDVTPKDEFFQ  536 (695)
T ss_dssp             CCCEEEE---TTTTEEE--ECCCCSBCCBSCEEEECTTSCEEEECCB---CS-SC--SEEEEETTTTEEEECCCSSGGGG
T ss_pred             ccEEEEe---CCCCcEE--ECCCCCCCcccceEEEEcCCEEEEECCC---CC-CC--CEEEEECCCCceEEccCCCCCCC
Confidence            4689999   9999999  98876654   222222 2  4444321   11 11  89999999999999874   332


Q ss_pred             ceecCCCCeeeeC---CcEEEEEeecC---CCccEEEEEeCCCce------eeee-cCCCCCCcCCcceeeccEEEEeCC
Q 038993          184 CYIARDSPGVYAS---GSLHWIVMAEY---GRHDFILALDLSDEA------YKEL-PLPPPVLLETGCRVRANYFGVLDN  250 (327)
Q Consensus       184 ~~~~~~~~~v~~~---G~lywl~~~~~---~~~~~il~fD~~~e~------~~~i-~lP~~~~~~~~~~~~~~~l~~~~~  250 (327)
                      ..  ....++.++   |.+|.++....   .....+..||+.+.+      |+.+ +.|...+    ...   ..+.+++
T Consensus       537 ~r--~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R----~~~---~~~~~~~  607 (695)
T 2zwa_A          537 NS--LVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR----YGS---QIKYITP  607 (695)
T ss_dssp             SC--CBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC----BSC---EEEEEET
T ss_pred             cc--cceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc----ccc---eEEEeCC
Confidence            22  122235556   88999987632   123579999999999      7777 3332221    122   4455555


Q ss_pred             CcEEEEEecCCCcC-CCeEEEEEEeeCCCCCCeE
Q 038993          251 GCLCLVSNYGGGYR-TPLSHVWVMTEYGVKDSWT  283 (327)
Q Consensus       251 g~L~~~~~~~~~~~-~~~l~iW~l~~~~~~~~W~  283 (327)
                      |+|++++....... ...-+||+++-.  ..+|+
T Consensus       608 ~~iyv~GG~~~~~~~~~~~~v~~yd~~--t~~W~  639 (695)
T 2zwa_A          608 RKLLIVGGTSPSGLFDRTNSIISLDPL--SETLT  639 (695)
T ss_dssp             TEEEEECCBCSSCCCCTTTSEEEEETT--TTEEE
T ss_pred             CEEEEECCccCCCCCCCCCeEEEEECC--CCeEE
Confidence            89999987543210 124457777652  36798

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.11  E-value=0.0022  Score=62.73  Aligned_cols=151  Identities=11%  Similarity=0.016  Sum_probs=88.3

Q ss_pred             EEEEcCCccccceeeccccCCCCCC-CceEEE--E--EEEEEEEeCCC-C--CCCccEEEEEEcCCCceEEcCCCCCcee
Q 038993          115 LAIWTHLRESTAFYRRQRLPWIPKR-LVAFFM--G--LVRIARRSGDA-C--FGGAAEVKVYSLARNSWKRIQDIPPCYI  186 (327)
Q Consensus       115 ~~V~N~~~P~T~~~~~~~LP~~~~~-~~~~gf--g--vv~v~~~~~~~-~--~~~~~~~~Vys~~~~~Wr~~~~~p~~~~  186 (327)
                      +...+   |.+++|.  .+++.+.. ......  +  ++.+.....+. .  ......+.+|+..+++|+.+..+|....
T Consensus       168 ~~~~d---p~~~~W~--~~~~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~  242 (656)
T 1k3i_A          168 YTAPQ---PGLGRWG--PTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD  242 (656)
T ss_dssp             CCCCC---TTSCEEE--EEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC
T ss_pred             cccCC---CCCCeee--eeccCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCC
Confidence            33457   8999999  87666543 211111  1  44443321110 0  1123478999999999998876553322


Q ss_pred             cCCCC-eeeeCCcEEEEEeecCCCccEEEEEeCCCceeeee-cCCCCCCcCCcceeeccEEEEeCCCcEEEEEec-CCCc
Q 038993          187 ARDSP-GVYASGSLHWIVMAEYGRHDFILALDLSDEAYKEL-PLPPPVLLETGCRVRANYFGVLDNGCLCLVSNY-GGGY  263 (327)
Q Consensus       187 ~~~~~-~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~-~~~~  263 (327)
                      ..... .+..+|.+|.++....   ..+..||+.+++|+.+ ++|...     ...   ..+.+.||+|+++... ....
T Consensus       243 ~~~~~~~~~~~g~lyv~GG~~~---~~v~~yd~~t~~W~~~~~~~~~R-----~~~---s~~~~~dg~iyv~GG~~~~~~  311 (656)
T 1k3i_A          243 MFCPGISMDGNGQIVVTGGNDA---KKTSLYDSSSDSWIPGPDMQVAR-----GYQ---SSATMSDGRVFTIGGSWSGGV  311 (656)
T ss_dssp             CSSCEEEECTTSCEEEECSSST---TCEEEEEGGGTEEEECCCCSSCC-----SSC---EEEECTTSCEEEECCCCCSSS
T ss_pred             CccccccCCCCCCEEEeCCCCC---CceEEecCcCCceeECCCCCccc-----ccc---ceEEecCCeEEEEeCcccCCc
Confidence            11111 2346899999987543   2699999999999988 344322     122   5667723999999873 3221


Q ss_pred             CCCeEEEEEEeeCCCCCCeEEE
Q 038993          264 RTPLSHVWVMTEYGVKDSWTKL  285 (327)
Q Consensus       264 ~~~~l~iW~l~~~~~~~~W~~~  285 (327)
                      ....+++|-.+    ...|+++
T Consensus       312 ~~~~~e~yd~~----t~~W~~~  329 (656)
T 1k3i_A          312 FEKNGEVYSPS----SKTWTSL  329 (656)
T ss_dssp             CCCCEEEEETT----TTEEEEE
T ss_pred             ccccceEeCCC----CCcceeC
Confidence            12344444322    3579886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.08  E-value=0.00012  Score=70.40  Aligned_cols=36  Identities=17%  Similarity=0.353  Sum_probs=29.5

Q ss_pred             CCCCCCcHHHHHHHHhcCC-cchhhhheeccccchhh
Q 038993            2 DDRDPLPLHIIDDILSRLH-VKQLLRLRCVSKTWRDL   37 (327)
Q Consensus         2 ~~~~~LP~Dll~eIL~rLP-~ksl~r~r~VcK~W~~l   37 (327)
                      +.++.||+|++.+||.+|| .+++.+++.|||+|+.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            4577899999999999999 99999999999999988

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.49  E-value=0.00068  Score=65.23  Aligned_cols=33  Identities=12%  Similarity=0.239  Sum_probs=31.2

Q ss_pred             CCCcHHHHHHHHhcC-Ccchhhhheeccccchhh
Q 038993            5 DPLPLHIIDDILSRL-HVKQLLRLRCVSKTWRDL   37 (327)
Q Consensus         5 ~~LP~Dll~eIL~rL-P~ksl~r~r~VcK~W~~l   37 (327)
                      ..||||++.+||.+| |.+++.+++.|||+|+.+
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            369999999999999 899999999999999887

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=87.41  E-value=9.9  Score=32.25  Aligned_cols=107  Identities=13%  Similarity=0.013  Sum_probs=65.0

Q ss_pred             eeCCcEEEEEeecCCCccEEEEEeCCCcee-eeecCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCCCeEEEEE
Q 038993          194 YASGSLHWIVMAEYGRHDFILALDLSDEAY-KELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRTPLSHVWV  272 (327)
Q Consensus       194 ~~~G~lywl~~~~~~~~~~il~fD~~~e~~-~~i~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~~~l~iW~  272 (327)
                      +.+|.||--+..+.  .-.|..+|+++.+- ..+++|...     +..   .+...+ ++|+++.-.++       .+|+
T Consensus        50 ~~~~~LyestG~~g--~S~v~~vD~~Tgkv~~~~~l~~~~-----Fge---Git~~g-~~ly~ltw~~~-------~v~v  111 (262)
T 3nol_A           50 YRNGYFYESTGLNG--RSSIRKVDIESGKTLQQIELGKRY-----FGE---GISDWK-DKIVGLTWKNG-------LGFV  111 (262)
T ss_dssp             EETTEEEEEEEETT--EEEEEEECTTTCCEEEEEECCTTC-----CEE---EEEEET-TEEEEEESSSS-------EEEE
T ss_pred             EECCEEEEECCCCC--CceEEEEECCCCcEEEEEecCCcc-----cee---EEEEeC-CEEEEEEeeCC-------EEEE
Confidence            44787777666531  33699999998765 556777543     222   466667 89999865443       4556


Q ss_pred             EeeCCCCCCeEEEEEEcCCCCCCCCcccCCCcccccccCCCceEEEEecCCCC
Q 038993          273 MTEYGVKDSWTKLFSILEEQVISPSPEFYDYSLPFESLEPPSLLRGWHPTSFG  325 (327)
Q Consensus       273 l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (327)
                      .+-    ..-.++.+|+... .+-.-..++ ...+++-+ ...|.+.||+++.
T Consensus       112 ~D~----~t~~~~~ti~~~~-eG~glt~dg-~~L~~SdG-s~~i~~iDp~T~~  157 (262)
T 3nol_A          112 WNI----RNLRQVRSFNYDG-EGWGLTHND-QYLIMSDG-TPVLRFLDPESLT  157 (262)
T ss_dssp             EET----TTCCEEEEEECSS-CCCCEEECS-SCEEECCS-SSEEEEECTTTCS
T ss_pred             EEC----ccCcEEEEEECCC-CceEEecCC-CEEEEECC-CCeEEEEcCCCCe
Confidence            553    3455667777643 221112233 33344444 6789999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	327
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	6e-07
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-04
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	1e-04
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	9e-04

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (102), Expect = 6e-07
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 5  DPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDF 43
          D LP  ++  I S L + +LL++  V K W  L      
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 7  LPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRN 51
          LP  +   +LS L  K LL+     + WR L +     + +    
Sbjct: 22 LPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEE 66

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 14/50 (28%), Positives = 18/50 (36%)

Query: 6  PLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRNQARD 55
              HI ++ILS L  K L     V K W  +       K  + R    D
Sbjct: 17 RGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTD 66

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.8 bits (82), Expect = 9e-04
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 4  RDP---LPLHIIDDILSRLHVKQLLRLRCVSKTWRDLID 39
          RD    LP  I   I + L  + ++    VS+ W  +I 
Sbjct: 3  RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	327
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.26
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.81
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.64
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.38
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	97.76
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	97.37
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.75
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.16

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=8.8e-13  Score=78.96  Aligned_cols=39  Identities=31%  Similarity=0.523  Sum_probs=37.1

Q ss_pred             CCCcHHHHHHHHhcCCcchhhhheeccccchhhcCChhh
Q 038993            5 DPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDF   43 (327)
Q Consensus         5 ~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F   43 (327)
                      +.||+|++.+||++||+++++|+++|||+|+.+++++.+
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            679999999999999999999999999999999998875

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=8.1e-10  Score=80.16  Aligned_cols=50  Identities=24%  Similarity=0.254  Sum_probs=45.9

Q ss_pred             CCCCCCcHHHHHHHHhcCCcchhhhheeccccchhhcCChhhHHHHhhcc
Q 038993            2 DDRDPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSRN   51 (327)
Q Consensus         2 ~~~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~~~~~~~   51 (327)
                      +.++.||+||+.+||+.||+++|+++.+|||+|+.++.++.+.+.+..+.
T Consensus        17 D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~   66 (102)
T d2ovrb1          17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEE   66 (102)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTT
T ss_pred             CChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            45788999999999999999999999999999999999999998877654

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=1.9e-09  Score=77.82  Aligned_cols=45  Identities=22%  Similarity=0.361  Sum_probs=39.1

Q ss_pred             CCCCCcHHHHHHHHhcCCcchhhhheeccccchhhcC-ChhhHHHH
Q 038993            3 DRDPLPLHIIDDILSRLHVKQLLRLRCVSKTWRDLID-GPDFIKLQ   47 (327)
Q Consensus         3 ~~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~-~~~F~~~~   47 (327)
                      .++.||+||+.+||+.|++++|++++.|||+|+.+++ ++...+..
T Consensus         5 ~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l   50 (100)
T d1nexb1           5 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL   50 (100)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHH
T ss_pred             chhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            4567999999999999999999999999999999985 57765543

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2.8e-08  Score=73.81  Aligned_cols=46  Identities=33%  Similarity=0.444  Sum_probs=40.9

Q ss_pred             CCCc----HHHHHHHHhcCCcchhhhheeccccchhhcCChhhHHHHhhc
Q 038993            5 DPLP----LHIIDDILSRLHVKQLLRLRCVSKTWRDLIDGPDFIKLQLSR   50 (327)
Q Consensus         5 ~~LP----~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~~~~~~   50 (327)
                      ..||    +||+..||+.|++++|+++.+|||+|+.+++++.+.+....+
T Consensus        12 ~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~   61 (118)
T d1p22a1          12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER   61 (118)
T ss_dssp             HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence            4566    599999999999999999999999999999999998876544

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=0.00022  Score=59.62  Aligned_cols=134  Identities=14%  Similarity=0.141  Sum_probs=86.3

Q ss_pred             CEEEEEcCCccccceeeccccCCCCCC---CceEEEE--EEEEEEEeC-CCCCCCccEEEEEEcCCCceEEcCCCCCcee
Q 038993          113 QTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG--LVRIARRSG-DACFGGAAEVKVYSLARNSWKRIQDIPPCYI  186 (327)
Q Consensus       113 ~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg--vv~v~~~~~-~~~~~~~~~~~Vys~~~~~Wr~~~~~p~~~~  186 (327)
                      ..+.++|   |.|++|.  .+|+++..   +.....+  ++.+..... .+.......+++|+..++.|+.+..+|... 
T Consensus        19 ~~~~~yd---~~t~~W~--~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r-   92 (288)
T d1zgka1          19 SYLEAYN---PSNGTWL--RLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPR-   92 (288)
T ss_dssp             CCEEEEE---TTTTEEE--ECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCC-
T ss_pred             ceEEEEE---CCCCeEE--ECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhccccccccccccccccee-
Confidence            4578999   9999999  99877654   2222222  444432211 112234568899999999999998776433 


Q ss_pred             cCCCCeeeeCCcEEEEEeecC-CCccEEEEEeCCCceeeeecCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCC
Q 038993          187 ARDSPGVYASGSLHWIVMAEY-GRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGG  261 (327)
Q Consensus       187 ~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~  261 (327)
                       .....+..+|.+|.+..... ........+|..++.|...+.+....    ...   ..+..+ ++++++.....
T Consensus        93 -~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r----~~~---~~~~~~-~~~~~~GG~~~  159 (288)
T d1zgka1          93 -NRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRR----IGV---GVAVLN-RLLYAVGGFDG  159 (288)
T ss_dssp             -BTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCC----BSC---EEEEET-TEEEEECCBCS
T ss_pred             -cceeccccceeeEEecceecccccceeeeeccccCcccccccccccc----ccc---eeeeee-ecceEecCccc
Confidence             22346778999999875543 22345778999999998874443321    122   455666 88888765543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.0085  Score=49.38  Aligned_cols=158  Identities=12%  Similarity=0.148  Sum_probs=99.7

Q ss_pred             CCEEEEEcCCccccceeeccccCCCCCC---CceEEEE-EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCCceec
Q 038993          112 PQTLAIWTHLRESTAFYRRQRLPWIPKR---LVAFFMG-LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCYIA  187 (327)
Q Consensus       112 ~~~~~V~N~~~P~T~~~~~~~LP~~~~~---~~~~gfg-vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~~~~~  187 (327)
                      .....+++   +.|..|.  ..|..+..   ....... .+.+..  +.........+++|+..++.|......+...  
T Consensus       116 ~~~~~~~~---~~~~~~~--~~~~~~~~r~~~~~~~~~~~~~~~G--G~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--  186 (288)
T d1zgka1         116 HNSVERYE---PERDEWH--LVAPMLTRRIGVGVAVLNRLLYAVG--GFDGTNRLNSAECYYPERNEWRMITAMNTIR--  186 (288)
T ss_dssp             CCCEEEEE---TTTTEEE--ECCCCSSCCBSCEEEEETTEEEEEC--CBCSSCBCCCEEEEETTTTEEEECCCCSSCC--
T ss_pred             cceeeeec---cccCccc--cccccccccccceeeeeeecceEec--CcccccccceEEEeecccccccccccccccc--
Confidence            34567889   9999999  88777654   1111111 211211  1123344567899999999999887555332  


Q ss_pred             CCCCeeeeCCcEEEEEeecC-CCccEEEEEeCCCceeeeec-CCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCCcCC
Q 038993          188 RDSPGVYASGSLHWIVMAEY-GRHDFILALDLSDEAYKELP-LPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGGYRT  265 (327)
Q Consensus       188 ~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~~~~  265 (327)
                      .....+..+|.+|-+..... ........||+.+.+|+.+. .|...     ...   .++.++ |+|+++......  .
T Consensus       187 ~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r-----~~~---~~~~~~-~~l~v~GG~~~~--~  255 (288)
T d1zgka1         187 SGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRR-----SAL---GITVHQ-GRIYVLGGYDGH--T  255 (288)
T ss_dssp             BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCC-----BSC---EEEEET-TEEEEECCBCSS--C
T ss_pred             ccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCcc-----cce---EEEEEC-CEEEEEecCCCC--e
Confidence            22345677899988875543 23346789999999999884 34322     122   566778 999999865443  1


Q ss_pred             CeEEEEEEeeCCCCCCeEEEEEEcCC
Q 038993          266 PLSHVWVMTEYGVKDSWTKLFSILEE  291 (327)
Q Consensus       266 ~~l~iW~l~~~~~~~~W~~~~~i~~~  291 (327)
                      ..-+||+.+-.  ...|+.+..++..
T Consensus       256 ~~~~v~~yd~~--~~~W~~~~~~p~~  279 (288)
T d1zgka1         256 FLDSVECYDPD--TDTWSEVTRMTSG  279 (288)
T ss_dssp             BCCEEEEEETT--TTEEEEEEECSSC
T ss_pred             ecceEEEEECC--CCEEEECCCCCCC
Confidence            23357777642  3679999776544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.75  E-value=0.0062  Score=52.55  Aligned_cols=149  Identities=10%  Similarity=0.004  Sum_probs=83.5

Q ss_pred             cccceeeccccCCCCCC-C-ceEE-EE--EEEEEEEeCC---CCCCCccEEEEEEcCCCceEEcCCCCCcee-cCCCCee
Q 038993          123 ESTAFYRRQRLPWIPKR-L-VAFF-MG--LVRIARRSGD---ACFGGAAEVKVYSLARNSWKRIQDIPPCYI-ARDSPGV  193 (327)
Q Consensus       123 P~T~~~~~~~LP~~~~~-~-~~~g-fg--vv~v~~~~~~---~~~~~~~~~~Vys~~~~~Wr~~~~~p~~~~-~~~~~~v  193 (327)
                      |.+++|.  ..++.+.. . ...- .+  |+.+......   ........+++|+..+++|+.+..++.... ......+
T Consensus         6 p~~g~W~--~~~~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~   83 (387)
T d1k3ia3           6 PGLGRWG--PTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISM   83 (387)
T ss_dssp             TTSCEEE--EEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEE
T ss_pred             CCCCccC--CcCCCCccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEE
Confidence            8899998  76655433 1 1111 11  4444443211   112344568999999999987654332111 1112234


Q ss_pred             eeCCcEEEEEeecCCCccEEEEEeCCCceeeeecCCCCCCcCCcceeeccEEEEeCCCcEEEEEecCCC-cCCCeEEEEE
Q 038993          194 YASGSLHWIVMAEYGRHDFILALDLSDEAYKELPLPPPVLLETGCRVRANYFGVLDNGCLCLVSNYGGG-YRTPLSHVWV  272 (327)
Q Consensus       194 ~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~~~~l~~~~~g~L~~~~~~~~~-~~~~~l~iW~  272 (327)
                      ..+|.+|+......   ..+-.||+.+++|+.++..+..+    ...   ..+.+.||+++++...... .....+++| 
T Consensus        84 ~~~g~i~v~Gg~~~---~~~~~yd~~~~~w~~~~~~~~~r----~~~---~~~~~~dG~v~v~GG~~~~~~~~~~v~~y-  152 (387)
T d1k3ia3          84 DGNGQIVVTGGNDA---KKTSLYDSSSDSWIPGPDMQVAR----GYQ---SSATMSDGRVFTIGGSWSGGVFEKNGEVY-  152 (387)
T ss_dssp             CTTSCEEEECSSST---TCEEEEEGGGTEEEECCCCSSCC----SSC---EEEECTTSCEEEECCCCCSSSCCCCEEEE-
T ss_pred             ecCCcEEEeecCCC---cceeEecCccCcccccccccccc----ccc---ceeeecCCceeeeccccccccccceeeee-
Confidence            56899999876542   35788999999999873322221    122   4556656999998865432 112234444 


Q ss_pred             EeeCCCCCCeEEEEE
Q 038993          273 MTEYGVKDSWTKLFS  287 (327)
Q Consensus       273 l~~~~~~~~W~~~~~  287 (327)
                       +- . ..+|...-.
T Consensus       153 -d~-~-~~~W~~~~~  164 (387)
T d1k3ia3         153 -SP-S-SKTWTSLPN  164 (387)
T ss_dssp             -ET-T-TTEEEEETT
T ss_pred             -cC-C-CCceeecCC
Confidence             32 1 367987543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.16  E-value=0.0038  Score=54.02  Aligned_cols=101  Identities=17%  Similarity=0.153  Sum_probs=66.4

Q ss_pred             EEEEEcCCccccceeeccccCCCCCC---Cc-eEEE---E-EEEEEEEeCCCCCCCccEEEEEEcCCCceEEcCCCCCce
Q 038993          114 TLAIWTHLRESTAFYRRQRLPWIPKR---LV-AFFM---G-LVRIARRSGDACFGGAAEVKVYSLARNSWKRIQDIPPCY  185 (327)
Q Consensus       114 ~~~V~N~~~P~T~~~~~~~LP~~~~~---~~-~~gf---g-vv~v~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~p~~~  185 (327)
                      ...++|   |.|++|.  .+|++...   +. ...+   | ++.+ .      ......+++|+..++.|.....++...
T Consensus        53 ~~~~yd---~~t~~w~--~~~~~~~~~~~~~~~~~~~~~g~i~v~-G------g~~~~~~~~yd~~~~~w~~~~~~~~~r  120 (387)
T d1k3ia3          53 LTSSWD---PSTGIVS--DRTVTVTKHDMFCPGISMDGNGQIVVT-G------GNDAKKTSLYDSSSDSWIPGPDMQVAR  120 (387)
T ss_dssp             EEEEEC---TTTCCBC--CCEEEECSCCCSSCEEEECTTSCEEEE-C------SSSTTCEEEEEGGGTEEEECCCCSSCC
T ss_pred             EEEEEE---CCCCcEe--ecCCCCCCcccceeEEEEecCCcEEEe-e------cCCCcceeEecCccCcccccccccccc
Confidence            468999   9999999  87665433   11 1111   1 3322 1      123457899999999999988776543


Q ss_pred             ecCCCCeeeeCCcEEEEEeecC--CCccEEEEEeCCCceeeeec
Q 038993          186 IARDSPGVYASGSLHWIVMAEY--GRHDFILALDLSDEAYKELP  227 (327)
Q Consensus       186 ~~~~~~~v~~~G~lywl~~~~~--~~~~~il~fD~~~e~~~~i~  227 (327)
                      . .....+..||.+|.+.....  .....+-.||+.+.+|+.++
T Consensus       121 ~-~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~  163 (387)
T d1k3ia3         121 G-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLP  163 (387)
T ss_dssp             S-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEET
T ss_pred             c-ccceeeecCCceeeeccccccccccceeeeecCCCCceeecC
Confidence            2 12223345899999986543  22345889999999998873