Citrus Sinensis ID: 039014

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMITPPVFGRGGGRRY
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHccccccccccccEEEEEEccccccccEEccccccHHHHHHHHccccccEEEEccHHHHHHHcccccccccccccccEEcHHHHHHHHHcccccccccEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEccHHHHHHHHHHHHHHHHHHccccccccHHHHHEEEcccHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHccccccccccccEEEccHHHHHHHHHccccccccEEEEccccccccccccccccccc
Coil and Loop (DISEMBL)
mgrvrtktvkKSSRQVIERYYSRMTLDFHTNKKILEEVAiipskrlrnKIAGFSTHLMKRIQkgpvrgislkLQEEERErrmdfvpdesaiktdeikVDKETLDMLAALGmsdisglvevepqsmitppvfgrgggrry
Flexible Loop (DISEMBL)
mgrvrtktvkkssrqvIERYysrmtldfhtnkKILEevaiipskrlrNKIAGFSTHlmkriqkgpvrgislklqeeererrmdfvpdesaiktdeikvdKETLDMLAALGMSDISglvevepqsmitppvfgrgggrry
Low Complexity Region (SEG)
MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMITPPVFGRGGGRRY
Disordered region (IsUnstruct)
***************VIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKG*V***********************************TLDMLAALGMSDISGLV*********************
Disordered Region (DISOPRED)
*GRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMK***************************DESAIKTDEIKVDKETLDMLAALGMSDISGLVEV*******************
Disordered Region (DISEMBL)
**************QVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMITPPVFGRGGGRRY
Disordered Region (DISPRO)
**RVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP*****************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMITPPVFGRGGGRRY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q9SQZ1	140	40S ribosomal protein S17	yes	no	0.985	0.978	0.868	7e-65
Q9SJ36	140	40S ribosomal protein S17	no	no	1.0	0.992	0.871	3e-64
P49205	141	40S ribosomal protein S17	no	no	1.0	0.985	0.865	3e-63
Q9LZ17	141	40S ribosomal protein S17	no	no	0.978	0.964	0.875	3e-63
P49215	144	40S ribosomal protein S17	N/A	no	0.942	0.909	0.864	1e-60
Q9P7J6	132	40S ribosomal protein S17	yes	no	0.848	0.893	0.677	6e-41
Q967G1	131	40S ribosomal protein S17	yes	no	0.805	0.854	0.669	2e-40
Q4MYY1	130	40S ribosomal protein S17	yes	no	0.805	0.861	0.669	2e-40
O42984	131	40S ribosomal protein S17	no	no	0.820	0.870	0.675	6e-40
A5PK63	135	40S ribosomal protein S17	yes	no	0.877	0.903	0.631	6e-40

>sp|Q9SQZ1|RS173_ARATH 40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3

 Score =  245 bits (625), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 119/137 (86%), Positives = 128/137 (93%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D++KVDKETL+MLA+LGMSDI+G+ +V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 EPQSMITPPVFGRGGGR 137
           E Q  + P VFGR  GR
Sbjct: 121 ETQQAMAPAVFGRPAGR 137

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJ36|RS172_ARATH 40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3

 Score =  243 bits (619), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 122/140 (87%), Positives = 127/140 (90%), Gaps = 1/140 (0%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD SG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 EPQSMITP-PVFGRGGGRRY 139
           EPQ  + P   FG    RRY
Sbjct: 121 EPQQAMAPIAAFGGRAPRRY 140

Arabidopsis thaliana (taxid: 3702)

>sp|P49205|RS171_ARATH 40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=1 SV=3

 Score =  239 bits (611), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 122/141 (86%), Positives = 128/141 (90%), Gaps = 2/141 (1%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 EPQSMITP-PVFGRG-GGRRY 139
           +PQ  + P P FG G   RRY
Sbjct: 121 DPQQAMAPIPAFGGGRAPRRY 141

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ17|RS174_ARATH 40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3

 Score =  239 bits (611), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 120/137 (87%), Positives = 126/137 (91%), Gaps = 1/137 (0%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 EPQSMITPPVFGRGGGR 137
           EPQ  +  P+   GGGR
Sbjct: 121 EPQQAMA-PIAAFGGGR 136

Arabidopsis thaliana (taxid: 3702)

>sp|P49215|RS17_SOLLC 40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3

 Score =  231 bits (588), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 115/133 (86%), Positives = 124/133 (93%), Gaps = 2/133 (1%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVE- 119
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKTD I+VDKETLDML+ALGMSD+ G+V+ 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQ 120

Query: 120 -VEPQSMITPPVF 131
             EPQ++   P +
Sbjct: 121 AAEPQAVAALPSY 133

Solanum lycopersicum (taxid: 4081)

>sp|Q9P7J6|RS17B_SCHPO 40S ribosomal protein S17-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps17b PE=1 SV=1

 Score =  165 bits (418), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 80/118 (67%), Positives = 99/118 (83%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKR
Sbjct: 1   MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLV 118
           IQ+GPVRGIS KLQEEERER+  +VP+ S ++ D+I VD++T DML ALG   I  +V
Sbjct: 61  IQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSIPTVV 118

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q967G1|RS17_THEAN 40S ribosomal protein S17 OS=Theileria annulata GN=RPS17 PE=2 SV=3

 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 75/112 (66%), Positives = 98/112 (87%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+R
Sbjct: 1   MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMS 112
           IQKGPVRGISLKLQEEERERRMD++P++S ++   I+VD++T DML  L +S
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS 112

Theileria annulata (taxid: 5874)

>sp|Q4MYY1|RS17_THEPA 40S ribosomal protein S17 OS=Theileria parva GN=RPS17 PE=3 SV=3

 Score =  163 bits (413), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 75/112 (66%), Positives = 98/112 (87%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+R
Sbjct: 1   MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMS 112
           IQKGPVRGISLKLQEEERERRMD++P++S ++   I+VD++T DML  L +S
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS 112

Theileria parva (taxid: 5875)

>sp|O42984|RS17A_SCHPO 40S ribosomal protein S17-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps17a PE=3 SV=1

 Score =  162 bits (410), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 96/114 (84%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKR
Sbjct: 1   MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDI 114
           IQ+GPVRGIS KLQEEERER+  +VP+ S ++ D + VD++T DML +LG   I
Sbjct: 61  IQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI 114

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A5PK63|RS17_BOVIN 40S ribosomal protein S17 OS=Bos taurus GN=RPS17 PE=2 SV=1

 Score =  162 bits (410), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 77/122 (63%), Positives = 100/122 (81%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKR
Sbjct: 1   MGRVRTKTVKKAARVIIEKYYTRLDNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
           IQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   
Sbjct: 61  IQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVT 120

Query: 121 EP 122
           +P
Sbjct: 121 QP 122

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
449446303	141	PREDICTED: 40S ribosomal protein S17-4-l	1.0	0.985	0.914	1e-66
313586435	143	40S ribosomal protein S17B [Hevea brasil	1.0	0.972	0.874	2e-64
313586433	143	40S ribosomal protein S17A [Hevea brasil	1.0	0.972	0.874	1e-63
224113415	136	predicted protein [Populus trichocarpa]	0.978	1.0	0.904	1e-63
356534524	139	PREDICTED: 40S ribosomal protein S17-4-l	1.0	1.0	0.863	2e-63
15228335	140	40S ribosomal protein S17-3 [Arabidopsis	0.985	0.978	0.868	5e-63
297806461	138	40S ribosomal protein S17 [Arabidopsis l	0.992	1.0	0.877	1e-62
18395997	140	40S ribosomal protein S17-2 [Arabidopsis	1.0	0.992	0.871	2e-62
297829612	138	40S ribosomal protein S17 [Arabidopsis l	0.992	1.0	0.863	4e-62
15228141	141	40S ribosomal protein S17-1 [Arabidopsis	1.0	0.985	0.865	2e-61

>gi|449446303|ref|XP_004140911.1| PREDICTED: 40S ribosomal protein S17-4-like isoform 1 [Cucumis sativus] gi|449446305|ref|XP_004140912.1| PREDICTED: 40S ribosomal protein S17-4-like isoform 2 [Cucumis sativus] gi|449494136|ref|XP_004159460.1| PREDICTED: 40S ribosomal protein S17-4-like isoform 1 [Cucumis sativus] gi|449494139|ref|XP_004159461.1| PREDICTED: 40S ribosomal protein S17-4-like isoform 2 [Cucumis sativus]

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 129/141 (91%), Positives = 132/141 (93%), Gaps = 2/141 (1%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETLDMLAA GMSDI GLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQSMITPPVFGRGGG--RRY 139
           EPQ+MI P  FGRG G  RRY
Sbjct: 121 EPQAMIPPQAFGRGAGGPRRY 141

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586435|gb|ADR71228.1| 40S ribosomal protein S17B [Hevea brasiliensis]

 Score =  249 bits (636), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 125/143 (87%), Positives = 132/143 (92%), Gaps = 4/143 (2%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRN+IAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNRIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVP+ESAIK DEIKVDKET+DMLAALGMSDI GLVE 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEESAIKIDEIKVDKETIDMLAALGMSDIPGLVEF 120

Query: 121 EPQSMITPPVFGRGG----GRRY 139
           EPQ ++ P VFGRG     GRR+
Sbjct: 121 EPQPLVPPQVFGRGQAGAPGRRF 143

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586433|gb|ADR71227.1| 40S ribosomal protein S17A [Hevea brasiliensis]

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 125/143 (87%), Positives = 131/143 (91%), Gaps = 4/143 (2%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
           IQKG VRGISLKLQEEERERRMDFVP+ESAIK DEIKVDKET+DMLAALGMSDI GLVE 
Sbjct: 61  IQKGSVRGISLKLQEEERERRMDFVPEESAIKIDEIKVDKETIDMLAALGMSDIPGLVEF 120

Query: 121 EPQSMITPPVFGRGG----GRRY 139
           EPQ ++ P VFGRG     GRR+
Sbjct: 121 EPQPLVPPQVFGRGQAGAPGRRF 143

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113415|ref|XP_002316489.1| predicted protein [Populus trichocarpa] gi|222865529|gb|EEF02660.1| predicted protein [Populus trichocarpa]

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 123/136 (90%), Positives = 128/136 (94%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVP+ESAIK  EIKVDKET+DMLAALGMSD+ GLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEESAIKIHEIKVDKETIDMLAALGMSDVPGLVEV 120

Query: 121 EPQSMITPPVFGRGGG 136
           EPQ M+    FGRGGG
Sbjct: 121 EPQPMLPTQGFGRGGG 136

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534524|ref|XP_003535803.1| PREDICTED: 40S ribosomal protein S17-4-like [Glycine max]

 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 120/139 (86%), Positives = 131/139 (94%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAI+TD+I+VDKETLDMLAALGMS++ G+V+V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIRTDQIEVDKETLDMLAALGMSEVPGVVQV 120

Query: 121 EPQSMITPPVFGRGGGRRY 139
           +P ++  P  FGRG GRRY
Sbjct: 121 DPVAVQAPLGFGRGAGRRY 139

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228335|ref|NP_187672.1| 40S ribosomal protein S17-3 [Arabidopsis thaliana] gi|20139843|sp|Q9SQZ1.3|RS173_ARATH RecName: Full=40S ribosomal protein S17-3 gi|12322775|gb|AAG51372.1|AC011560_4 putative 40S ribosomal protein S17; 27898-27476 [Arabidopsis thaliana] gi|8567795|gb|AAF76367.1| 40S ribosomal protein S17, putative [Arabidopsis thaliana] gi|17380850|gb|AAL36237.1| putative 40S ribosomal protein S17 [Arabidopsis thaliana] gi|20259073|gb|AAM14252.1| putative 40S ribosomal protein S17 [Arabidopsis thaliana] gi|21593823|gb|AAM65790.1| 40S ribosomal protein S17-3 [Arabidopsis thaliana] gi|332641413|gb|AEE74934.1| 40S ribosomal protein S17-3 [Arabidopsis thaliana]

 Score =  245 bits (625), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 119/137 (86%), Positives = 128/137 (93%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D++KVDKETL+MLA+LGMSDI+G+ +V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 EPQSMITPPVFGRGGGR 137
           E Q  + P VFGR  GR
Sbjct: 121 ETQQAMAPAVFGRPAGR 137

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806461|ref|XP_002871114.1| 40S ribosomal protein S17 [Arabidopsis lyrata subsp. lyrata] gi|297316951|gb|EFH47373.1| 40S ribosomal protein S17 [Arabidopsis lyrata subsp. lyrata]

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 122/139 (87%), Positives = 128/139 (92%), Gaps = 1/139 (0%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAI+TDEIKVDKETL+MLA+LGMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIRTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 EPQSMITPPVFGRGGGRRY 139
           EPQ+M   P FGR   RRY
Sbjct: 121 EPQTMAPIPAFGR-APRRY 138

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395997|ref|NP_565320.1| 40S ribosomal protein S17-2 [Arabidopsis thaliana] gi|79321790|ref|NP_001031325.1| 40S ribosomal protein S17-2 [Arabidopsis thaliana] gi|20139841|sp|Q9SJ36.3|RS172_ARATH RecName: Full=40S ribosomal protein S17-2 gi|13878099|gb|AAK44127.1|AF370312_1 putative 40S ribosomal protein S17 [Arabidopsis thaliana] gi|17104767|gb|AAL34272.1| putative 40S ribosomal protein S17 [Arabidopsis thaliana] gi|20198002|gb|AAD29060.2| 40S ribosomal protein S17 [Arabidopsis thaliana] gi|25083446|gb|AAN72079.1| 40S ribosomal protein S17 [Arabidopsis thaliana] gi|30102846|gb|AAP21341.1| At2g05220 [Arabidopsis thaliana] gi|330250813|gb|AEC05907.1| 40S ribosomal protein S17-2 [Arabidopsis thaliana] gi|330250814|gb|AEC05908.1| 40S ribosomal protein S17-2 [Arabidopsis thaliana]

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 122/140 (87%), Positives = 127/140 (90%), Gaps = 1/140 (0%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD SG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 EPQSMITP-PVFGRGGGRRY 139
           EPQ  + P   FG    RRY
Sbjct: 121 EPQQAMAPIAAFGGRAPRRY 140

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829612|ref|XP_002882688.1| 40S ribosomal protein S17 [Arabidopsis lyrata subsp. lyrata] gi|297328528|gb|EFH58947.1| 40S ribosomal protein S17 [Arabidopsis lyrata subsp. lyrata]

 Score =  242 bits (617), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 120/139 (86%), Positives = 128/139 (92%), Gaps = 1/139 (0%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKTD++KVDKETL+MLA+LGMSD  G+ +V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDDVKVDKETLEMLASLGMSDTRGISQV 120

Query: 121 EPQSMITPPVFGRGGGRRY 139
           E Q  + P VFGR   RRY
Sbjct: 121 ETQQAMAPAVFGR-PARRY 138

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228141|ref|NP_178520.1| 40S ribosomal protein S17-1 [Arabidopsis thaliana] gi|19884102|sp|P49205.3|RS171_ARATH RecName: Full=40S ribosomal protein S17-1 gi|16930429|gb|AAL31900.1|AF419568_1 At2g04390/T1O3.20 [Arabidopsis thaliana] gi|4587611|gb|AAD25839.1| 40S ribosomal protein S17 [Arabidopsis thaliana] gi|19310511|gb|AAL84989.1| At2g04390/T1O3.20 [Arabidopsis thaliana] gi|21595522|gb|AAM66109.1| 40S ribosomal protein S17 [Arabidopsis thaliana] gi|330250735|gb|AEC05829.1| 40S ribosomal protein S17-1 [Arabidopsis thaliana]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 122/141 (86%), Positives = 128/141 (90%), Gaps = 2/141 (1%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 EPQSMITP-PVFGRG-GGRRY 139
           +PQ  + P P FG G   RRY
Sbjct: 121 DPQQAMAPIPAFGGGRAPRRY 141

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
TAIR|locus:2075735	140	AT3G10610 "AT3G10610" [Arabido	0.985	0.978	0.868	1.2e-58
TAIR|locus:2051229	140	AT2G05220 "AT2G05220" [Arabido	1.0	0.992	0.871	2.5e-58
TAIR|locus:2058324	141	AT2G04390 "AT2G04390" [Arabido	1.0	0.985	0.865	4e-58
TAIR|locus:2175428	141	AT5G04800 "AT5G04800" [Arabido	0.978	0.964	0.875	1.1e-57
UNIPROTKB|Q7XEQ3	141	Os10g0411800 "Os10g0411800 pro	0.971	0.957	0.737	3.1e-51
UNIPROTKB|Q8H7V0	144	OSJNBb0043C10.11 "40S ribosoma	0.949	0.916	0.765	5.1e-51
UNIPROTKB|A8JGK1	139	RPS17 "Ribosomal protein S17"	0.992	0.992	0.666	1e-45
GENEDB_PFALCIPARUM|PFL2055w	137	PFL2055w "40S ribosomal protei	0.834	0.846	0.675	7.8e-39
UNIPROTKB|Q8I502	137	PFL2055w "40S ribosomal protei	0.834	0.846	0.675	7.8e-39
POMBASE|SPCC24B10.09	132	rps1702 "40S ribosomal protein	0.848	0.893	0.677	3.4e-38

TAIR|locus:2075735 AT3G10610 "AT3G10610" [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 119/137 (86%), Positives = 128/137 (93%)

Query:     1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
             MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct:     1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
             IQKGPVRGISLKLQEEERERRMDFVPDESAIK D++KVDKETL+MLA+LGMSDI+G+ +V
Sbjct:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query:   121 EPQSMITPPVFGRGGGR 137
             E Q  + P VFGR  GR
Sbjct:   121 ETQQAMAPAVFGRPAGR 137

GO:0000028 "ribosomal small subunit assembly" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

TAIR|locus:2051229 AT2G05220 "AT2G05220" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 122/140 (87%), Positives = 127/140 (90%)

Query:     1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
             MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct:     1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
             IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD SG+  V
Sbjct:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query:   121 EPQSMITP-PVFGRGGGRRY 139
             EPQ  + P   FG    RRY
Sbjct:   121 EPQQAMAPIAAFGGRAPRRY 140

GO:0000028 "ribosomal small subunit assembly" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2058324 AT2G04390 "AT2G04390" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 122/141 (86%), Positives = 128/141 (90%)

Query:     1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
             MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct:     1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
             IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD  G+  V
Sbjct:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query:   121 EPQSMITP-PVFGRGGG-RRY 139
             +PQ  + P P FG G   RRY
Sbjct:   121 DPQQAMAPIPAFGGGRAPRRY 141

GO:0000028 "ribosomal small subunit assembly" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2175428 AT5G04800 "AT5G04800" [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 120/137 (87%), Positives = 126/137 (91%)

Query:     1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
             MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct:     1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
             IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD  G+  V
Sbjct:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query:   121 EPQSMITPPVFGRGGGR 137
             EPQ  + P +   GGGR
Sbjct:   121 EPQQAMAP-IAAFGGGR 136

GO:0000028 "ribosomal small subunit assembly" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

UNIPROTKB|Q7XEQ3 Os10g0411800 "Os10g0411800 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 104/141 (73%), Positives = 126/141 (89%)

Query:     1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
             MGRVRTKTVKK+SRQVIE+YYSRMTLDFHTNKK+LEEV+I+PSKRLRNK+AGF+THLM+R
Sbjct:     1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRR 60

Query:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
             IQ+GPVRGISLKLQEEERERRMDFVP++SA++ +EI+VDKET++MLAALGM+D+ G   V
Sbjct:    61 IQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPG---V 117

Query:   121 EPQSMITPPVFGR---GGGRR 138
             E Q  ++ P + R   GG RR
Sbjct:   118 ERQQEVSAPTYSRPPYGGPRR 138

GO:0000028 "ribosomal small subunit assembly" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

UNIPROTKB|Q8H7V0 OSJNBb0043C10.11 "40S ribosomal protein S17, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 101/132 (76%), Positives = 118/132 (89%)

Query:     1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
             MGRVRTKTVKK+SRQVIE+YYSRMTLDFHTNKK+LEEV+I+PSKRLRNK+AGFSTHLM+R
Sbjct:     1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRR 60

Query:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
             IQ+GPVRGISLKLQEEERERRMDFVPD SA++ D+I+VDKETLDML +LGM+D+ G+V  
Sbjct:    61 IQRGPVRGISLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGVVRQ 120

Query:   121 EPQSMITPPVFG 132
                S   P  +G
Sbjct:   121 PDASTSAPQQYG 132

GO:0000028 "ribosomal small subunit assembly" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

UNIPROTKB|A8JGK1 RPS17 "Ribosomal protein S17" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 92/138 (66%), Positives = 116/138 (84%)

Query:     1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
             MGRVRTKTVKK+SR +IE+YY R+T+DF TNK+++EEVA+I +KRLRNKIAGF+THLMKR
Sbjct:     1 MGRVRTKTVKKASRVIIEKYYGRLTMDFDTNKRVVEEVALIATKRLRNKIAGFTTHLMKR 60

Query:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
             IQ+GPVRGISLKLQEEERERRMDFVP+ESAI T  I+VDK+T+DML ++ M  +SG+   
Sbjct:    61 IQRGPVRGISLKLQEEERERRMDFVPEESAINTLSIEVDKDTMDMLKSINMGTLSGVQLA 120

Query:   121 EPQSMITPPVFGRGGGRR 138
             +PQ+   P    RGG ++
Sbjct:   121 QPQTNFKPYGGNRGGNKQ 138

GO:0000028 "ribosomal small subunit assembly" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GENEDB_PFALCIPARUM|PFL2055w PFL2055w "40S ribosomal protein S17, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 79/117 (67%), Positives = 102/117 (87%)

Query:     1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
             MGRVRTKT+K+++RQ++E+YY+++TLDF  NKKI EEVAIIPSKR++NK+AGF THLMKR
Sbjct:     1 MGRVRTKTIKRAARQIVEKYYAKLTLDFQINKKITEEVAIIPSKRMKNKVAGFVTHLMKR 60

Query:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGL 117
             IQKGPVRGISLKLQEEERERR+DFVP++S I    I V+ +TL M+ +LG++ IS +
Sbjct:    61 IQKGPVRGISLKLQEEERERRLDFVPEKSQIDVSVIYVEPDTLRMIKSLGIN-ISNM 116

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

UNIPROTKB|Q8I502 PFL2055w "40S ribosomal protein S17, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 79/117 (67%), Positives = 102/117 (87%)

Query:     1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
             MGRVRTKT+K+++RQ++E+YY+++TLDF  NKKI EEVAIIPSKR++NK+AGF THLMKR
Sbjct:     1 MGRVRTKTIKRAARQIVEKYYAKLTLDFQINKKITEEVAIIPSKRMKNKVAGFVTHLMKR 60

Query:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGL 117
             IQKGPVRGISLKLQEEERERR+DFVP++S I    I V+ +TL M+ +LG++ IS +
Sbjct:    61 IQKGPVRGISLKLQEEERERRLDFVPEKSQIDVSVIYVEPDTLRMIKSLGIN-ISNM 116

GO:0005739 "mitochondrion" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

POMBASE|SPCC24B10.09 rps1702 "40S ribosomal protein S17 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 80/118 (67%), Positives = 99/118 (83%)

Query:     1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
             MGRVRTKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKR
Sbjct:     1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60

Query:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLV 118
             IQ+GPVRGIS KLQEEERER+  +VP+ S ++ D+I VD++T DML ALG   I  +V
Sbjct:    61 IQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSIPTVV 118

GO:0002182 "cytoplasmic translational elongation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO

GO:0042254 "ribosome biogenesis" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O01692	RS17_CAEEL	No assigned EC number	0.6347	0.8057	0.8615	yes	no
P49205	RS171_ARATH	No assigned EC number	0.8652	1.0	0.9858	no	no
Q90YQ6	RS17_ICTPU	No assigned EC number	0.6311	0.8776	0.9104	N/A	no
Q967G1	RS17_THEAN	No assigned EC number	0.6696	0.8057	0.8549	yes	no
P08636	RS17_CHICK	No assigned EC number	0.6311	0.8776	0.9037	yes	no
P0CW22	RS17L_HUMAN	No assigned EC number	0.6311	0.8776	0.9037	yes	no
Q962R2	RS17_SPOFR	No assigned EC number	0.5869	0.9496	0.9924	N/A	no
A5PK63	RS17_BOVIN	No assigned EC number	0.6311	0.8776	0.9037	yes	no
Q9SQZ1	RS173_ARATH	No assigned EC number	0.8686	0.9856	0.9785	yes	no
P17704	RS17_DROME	No assigned EC number	0.6129	0.8920	0.9465	yes	no
Q9P7J6	RS17B_SCHPO	No assigned EC number	0.6779	0.8489	0.8939	yes	no
P42520	RS17_DICDI	No assigned EC number	0.6388	0.7769	0.8	yes	no
P04644	RS17_RAT	No assigned EC number	0.6311	0.8776	0.9037	yes	no
Q6QAP7	RS17_PIG	No assigned EC number	0.6311	0.8776	0.9037	yes	no
P08708	RS17_HUMAN	No assigned EC number	0.6311	0.8776	0.9037	yes	no
Q9U9L1	RS17_ANOGA	No assigned EC number	0.6578	0.8201	0.8702	yes	no
P63276	RS17_MOUSE	No assigned EC number	0.6311	0.8776	0.9037	yes	no
P63274	RS17_CRIGR	No assigned EC number	0.6311	0.8776	0.9037	yes	no
Q9SJ36	RS172_ARATH	No assigned EC number	0.8714	1.0	0.9928	no	no
Q4MYY1	RS17_THEPA	No assigned EC number	0.6696	0.8057	0.8615	yes	no
P49215	RS17_SOLLC	No assigned EC number	0.8646	0.9424	0.9097	N/A	no
P63273	RS17_CANFA	No assigned EC number	0.6311	0.8776	0.9037	yes	no
P14127	RS17B_YEAST	No assigned EC number	0.5748	0.8848	0.9044	yes	no
Q7ZUB2	RS17_COTJA	No assigned EC number	0.6311	0.8776	0.9037	N/A	no
P27770	RS17_NEUCR	No assigned EC number	0.5833	0.9784	0.9315	N/A	no
Q9LZ17	RS174_ARATH	No assigned EC number	0.8759	0.9784	0.9645	no	no
P02407	RS17A_YEAST	No assigned EC number	0.5748	0.8848	0.9044	yes	no
P63275	RS17_FELCA	No assigned EC number	0.6311	0.8776	0.9037	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.X.3379.1	SubName- Full=Putative uncharacterized protein; (136 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00041113	hypothetical protein (144 aa)			•	•	•	•	•		0.722
	estExt_fgenesh4_kg.C_LG_XVII0009	SubName- Full=Putative uncharacterized protein; (144 aa)			•	•	•	•	•		0.718
	grail3.0189002602	SubName- Full=Putative uncharacterized protein; (220 aa)			•	•		•	•		0.630
	estExt_fgenesh4_pm.C_LG_XIX0276	SubName- Full=Putative uncharacterized protein; (220 aa)			•	•		•	•		0.630
	estExt_fgenesh4_pm.C_LG_I0760	hypothetical protein (122 aa)			•	•		•	•		0.628
	fgenesh4_kg.C_LG_V000020	SubName- Full=Putative uncharacterized protein; (106 aa)			•	•			•		0.619
	estExt_fgenesh4_pg.C_LG_X2153	SubName- Full=Putative uncharacterized protein; (105 aa)			•	•			•		0.611
	gw1.XVI.1998.1	SubName- Full=Putative uncharacterized protein; (204 aa)				•	•	•	•		0.611
	estExt_fgenesh4_pg.C_LG_VII0715	SubName- Full=Putative uncharacterized protein; (106 aa)			•	•			•		0.608
	eugene3.00061162	SubName- Full=Putative uncharacterized protein; (208 aa)				•	•	•	•		0.605

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	139
PTZ00154	134	PTZ00154, PTZ00154, 40S ribosomal protein S17; Pro	1e-69
pfam00833	122	pfam00833, Ribosomal_S17e, Ribosomal S17	7e-68
COG1383	74	COG1383, RPS17A, Ribosomal protein S17E [Translati	1e-27
PRK01151	58	PRK01151, rps17E, 30S ribosomal protein S17e; Vali	1e-17

>gnl|CDD|240295 PTZ00154, PTZ00154, 40S ribosomal protein S17; Provisional

 Score =  205 bits (524), Expect = 1e-69
 Identities = 86/122 (70%), Positives = 105/122 (86%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVK+++RQ++E+YYS++TLDFHTNKKI+EEVAIIPSKRLRNKIAGF THLMKR
Sbjct: 1   MGRVRTKTVKRAARQIVEKYYSKLTLDFHTNKKIVEEVAIIPSKRLRNKIAGFVTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
           IQKGPVRGISLKLQEEERERRMD+VP++S +  D I VD++T DML +LG+     +   
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDYVPEKSEVDIDNITVDQDTKDMLKSLGLGVPRPVKVP 120

Query: 121 EP 122
           + 
Sbjct: 121 DV 122

Length = 134

>gnl|CDD|216141 pfam00833, Ribosomal_S17e, Ribosomal S17

 Score =  200 bits (511), Expect = 7e-68
 Identities = 80/123 (65%), Positives = 102/123 (82%), Gaps = 1/123 (0%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVK+++R +IE+YYS++TLDF TNK+I +EVAIIPSKRLRNKIAG+ THLMKR
Sbjct: 1   MGRVRTKTVKRAARVIIEKYYSKLTLDFQTNKRICDEVAIIPSKRLRNKIAGYVTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
           IQ+GPVRGISLKLQEEERERR ++VP+ S +    I+VD +T +ML +LG  +I   V+V
Sbjct: 61  IQRGPVRGISLKLQEEERERRDNYVPEVSELDVPLIEVDPDTKEMLKSLGFGEIPN-VKV 119

Query: 121 EPQ 123
             +
Sbjct: 120 VQE 122

Length = 122

>gnl|CDD|224301 COG1383, RPS17A, Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]

 Score = 97.0 bits (242), Expect = 1e-27
 Identities = 41/74 (55%), Positives = 59/74 (79%)

Query: 1  MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
          MGR+R K VK+++R++IE+Y  + T DF TNK+++EE+A I SK+LRN+IAG+ T L+KR
Sbjct: 1  MGRIRPKFVKRTARELIEKYPDKFTDDFETNKRLVEELANIQSKKLRNRIAGYITRLVKR 60

Query: 61 IQKGPVRGISLKLQ 74
          I++GP R I  KLQ
Sbjct: 61 IKEGPKREIEEKLQ 74

Length = 74

>gnl|CDD|179234 PRK01151, rps17E, 30S ribosomal protein S17e; Validated

 Score = 71.1 bits (175), Expect = 1e-17
 Identities = 25/58 (43%), Positives = 42/58 (72%)

Query: 2  GRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMK 59
          G +R K +K+++ +++E+Y    T DF TNKK++EE+  I SK++RN+IAG+ T  +K
Sbjct: 1  GNIRPKYIKRTAEELLEKYPDLFTTDFETNKKLVEELTNIESKKVRNRIAGYITRKVK 58

Length = 58

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
KOG0187	134	consensus 40S ribosomal protein S17 [Translation,	100.0
PF00833	121	Ribosomal_S17e: Ribosomal S17; InterPro: IPR001210	100.0
PTZ00154	134	40S ribosomal protein S17; Provisional	100.0
COG1383	74	RPS17A Ribosomal protein S17E [Translation, riboso	100.0
PRK01151	58	rps17E 30S ribosomal protein S17e; Validated	99.98

>KOG0187 consensus 40S ribosomal protein S17 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.9e-76  Score=449.47  Aligned_cols=128  Identities=66%  Similarity=1.009  Sum_probs=126.3

Q ss_pred             CCcccchhHHHHHHHHHHHhhcccCcchhHHHHHHHHhhccCcccccccccchhhhhhhhhhcCccccceeccchHHHhh
Q 039014            1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERER   80 (139)
Q Consensus         1 MGrVRtk~VKr~a~~iiEkY~~~~t~DF~~NK~vv~eva~I~SKklRNkIAGYVThLmKriqrgpvrGisiklqEEerer   80 (139)
                      ||+|||||||+|||+|+||||.++++||||||++|+|+|+||||+|||+||||+||||||||+|||||||||||||||||
T Consensus         1 MGrVrtktvKkaar~iiEkYy~rl~~dF~tNk~vceEvAII~SKkLrNkIAGyvtHLmkrIqkGpvRGISiKLQEEEREr   80 (134)
T KOG0187|consen    1 MGRVRTKTVKKAARVIIEKYYTRLTLDFHTNKRVCEEVAIIPSKKLRNKIAGYVTHLMKRIQKGPVRGISIKLQEEERER   80 (134)
T ss_pred             CCcchhHHHHHHHHHHHHHHhccccccccccchhehheeeecchhhhhHHHHHHHHHHHHHHcCCccceeEeecHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCccccccCcceechHHHHHHHHcCCCCCCCceeecCCCCCCC
Q 039014           81 RMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMITP  128 (139)
Q Consensus        81 rdnyvpe~S~ld~~~ieVD~~T~eMlk~l~~~~~~~~~v~~p~~~~~~  128 (139)
                      |||||||+|+||+|+|+||+||+||||+|||++++|+++++|++++..
T Consensus        81 rdnyVPevSaLd~d~ieVD~dT~eMlk~lg~~~~~~~~~~~~~~~~~~  128 (134)
T KOG0187|consen   81 RDNYVPEVSALDQDIIEVDPDTKEMLKLLGFGSLSGVQVTEPQVEMNF  128 (134)
T ss_pred             hcccCcchhhcchhheeeChhHHHHHHHcCCCCcCceeeeccchhhcc
Confidence            999999999999999999999999999999999999999999988764

>PF00833 Ribosomal_S17e: Ribosomal S17; InterPro: IPR001210 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=8.1e-70  Score=411.24  Aligned_cols=121  Identities=63%  Similarity=1.001  Sum_probs=111.7

Q ss_pred             CCcccchhHHHHHHHHHHHhhcccCcchhHHHHHHHHhhccCcccccccccchhhhhhhhhhcCccccceeccchHHHhh
Q 039014            1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERER   80 (139)
Q Consensus         1 MGrVRtk~VKr~a~~iiEkY~~~~t~DF~~NK~vv~eva~I~SKklRNkIAGYVThLmKriqrgpvrGisiklqEEerer   80 (139)
                      ||+|||++||++|++|+|+||++||+|||+||++|+|+|+||||+|||+|||||||||||||+|||||||||||||||||
T Consensus         1 MG~Vrtk~IKr~a~~lieky~~~~t~DF~~NK~v~~eva~i~SKklRNkIAGYvThlmKriq~g~vrgis~klqEeErer   80 (121)
T PF00833_consen    1 MGRVRTKTIKRAARELIEKYYDRFTNDFETNKKVVEEVAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERER   80 (121)
T ss_dssp             ------HHHHHHHHHHHTTCTTTSSSSHHHHHHHHHHCSSSSSTTHHHHHHHHHHHHHHHHTSSSSTTCSSCCCCHHHHC
T ss_pred             CCCCcchHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHccccchhhHHHHHHHHHHHHHHHHhccccccchhhhHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCccccccCcceechHHHHHHHHcCCCCCCCceeec
Q 039014           81 RMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVE  121 (139)
Q Consensus        81 rdnyvpe~S~ld~~~ieVD~~T~eMlk~l~~~~~~~~~v~~  121 (139)
                      ||||||++|++|++.|+|||||+||||+|||+++||++|+|
T Consensus        81 r~n~vpe~s~~d~~~i~VD~~T~emlk~l~~~~~~~~~~~~  121 (121)
T PF00833_consen   81 RDNYVPEVSALDQEIIEVDPDTKEMLKSLGFGSLPNLQVTQ  121 (121)
T ss_dssp             CTSSSSSSSEEESCS-ECTHHHHHHHHHTTTTSSS-EEEE-
T ss_pred             hcccCCccccccCCcceeChhHHHHHHHcCCCCCCcceecC
Confidence            99999999999999999999999999999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped in this family of ribosomal proteins, S17e. They include, vertebrate, Drosophila and Neurospora crassa (crp-3) S17's as well as yeast S17a (RP51A) and S17b (RP51B) and archaebacterial S17e [, , ].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1RQ6_A 2XZM_V 2XZN_V 3IZ6_Q 3IZB_Q 3O30_K 3O2Z_K 3U5G_R 3U5C_R.

>PTZ00154 40S ribosomal protein S17; Provisional

Probab=100.00  E-value=6.7e-69  Score=411.76  Aligned_cols=127  Identities=68%  Similarity=1.032  Sum_probs=123.6

Q ss_pred             CCcccchhHHHHHHHHHHHhhcccCcchhHHHHHHHHhhccCcccccccccchhhhhhhhhhcCccccceeccchHHHhh
Q 039014            1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERER   80 (139)
Q Consensus         1 MGrVRtk~VKr~a~~iiEkY~~~~t~DF~~NK~vv~eva~I~SKklRNkIAGYVThLmKriqrgpvrGisiklqEEerer   80 (139)
                      ||+|||++||++|++|+|+||++||+|||+||++|+|+|+|+||+|||+||||||||||+||+|||||||||||||||||
T Consensus         1 MG~VRtk~VKr~a~~LiEkY~~~ft~DFe~NKkvv~eva~I~SKrlRNrIAGYIThlmkri~~gpvrgis~klqeeerer   80 (134)
T PTZ00154          1 MGRVRTKTVKRAARQIVEKYYSKLTLDFHTNKKIVEEVAIIPSKRLRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERER   80 (134)
T ss_pred             CCCcchHHHHHHHHHHHHHhHHHhcccHHHHHHHHHHHhcccchhhhhHHHHHHHHHHhhhccCCccccceehhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCccccccCcceechHHHHHHHHcCCCCCC-CceeecCCCCCCC
Q 039014           81 RMDFVPDESAIKTDEIKVDKETLDMLAALGMSDIS-GLVEVEPQSMITP  128 (139)
Q Consensus        81 rdnyvpe~S~ld~~~ieVD~~T~eMlk~l~~~~~~-~~~v~~p~~~~~~  128 (139)
                      |||||||+|+||++.|+||+||+|||++|||+ +| ++++++|+.....
T Consensus        81 r~~yvPe~s~~~~~~i~vd~~t~~ml~~~~~~-~~~~~~~~~~~~~~~~  128 (134)
T PTZ00154         81 RMDYVPEKSEVDIDNITVDQDTKDMLKSLGLG-VPRPVKVPDVARKKQK  128 (134)
T ss_pred             hhccCCcchhcccceeEECHHHHHHHHHcCCC-CCCCceeccccccccc
Confidence            99999999999999999999999999999997 88 8999999876554

>COG1383 RPS17A Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.3e-36  Score=211.98  Aligned_cols=74  Identities=55%  Similarity=0.877  Sum_probs=73.0

Q ss_pred             CCcccchhHHHHHHHHHHHhhcccCcchhHHHHHHHHhhccCcccccccccchhhhhhhhhhcCccccceeccc
Q 039014            1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQ   74 (139)
Q Consensus         1 MGrVRtk~VKr~a~~iiEkY~~~~t~DF~~NK~vv~eva~I~SKklRNkIAGYVThLmKriqrgpvrGisiklq   74 (139)
                      ||+|||++|||+|++|+|+|++.||.||++||++|+|+|.|+||+|||+|||||||||++++.|++++|++|+|
T Consensus         1 MG~IR~~~vKR~a~el~ekY~~~ft~dFe~NK~~V~e~~~i~SK~lRN~IAGYiT~~~~~~~~~~~~e~~~k~~   74 (74)
T COG1383           1 MGRIRPKFVKRTARELIEKYPDKFTDDFETNKRLVEELANIQSKKLRNRIAGYITRLVKRIKEGPKREIEEKLQ   74 (74)
T ss_pred             CCCcchHHHHHHHHHHHHHhHHHhcccHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999876

>PRK01151 rps17E 30S ribosomal protein S17e; Validated

Probab=99.98  E-value=1.2e-33  Score=191.06  Aligned_cols=58  Identities=43%  Similarity=0.744  Sum_probs=57.2

Q ss_pred             CcccchhHHHHHHHHHHHhhcccCcchhHHHHHHHHhhccCcccccccccchhhhhhh
Q 039014            2 GRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMK   59 (139)
Q Consensus         2 GrVRtk~VKr~a~~iiEkY~~~~t~DF~~NK~vv~eva~I~SKklRNkIAGYVThLmK   59 (139)
                      |+|||++||++|++|+|+||++||+|||+||++|+|+|+|+||+|||+|||||||||+
T Consensus         1 G~Ir~k~IKr~a~~lieky~~~ft~DFe~NK~~v~e~a~i~SK~lRNrIAGYiT~~~~   58 (58)
T PRK01151          1 GNIRPKYIKRTAEELLEKYPDLFTTDFETNKKLVEELTNIESKKVRNRIAGYITRKVK   58 (58)
T ss_pred             CCcchHHHHHHHHHHHHHhHHHhcccHHHHHHHHHHHhcCccHhHHHHHhhhhhhccC
Confidence            8999999999999999999999999999999999999999999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
3iz6_Q	141	Localization Of The Small Subunit Ribosomal Protein		2e-56
2xzm_V	130	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-44
3izb_Q	136	Localization Of The Small Subunit Ribosomal Protein		2e-37
3zey_L	142	High-resolution Cryo-electron Microscopy Structure		2e-34
1rq6_A	62	Solution Structure Of Ribosomal Protein S17e From M		3e-09
3j20_S	67	Promiscuous Behavior Of Proteins In Archaeal Riboso		5e-08

>pdb|3IZ6|Q Chain Q, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 141

Iteration: 1
 Score =  213 bits (543), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/141 (73%), Positives = 126/141 (89%), Gaps = 6/141 (4%)
Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKK+SRQVIE+YYSRMTLDFHTNKK+LEEV+I+PSKRLRNK+AGF+THLM+R
Sbjct: 1   MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRR 60
Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
           IQ+GPVRGISLKLQEEERERRMDFVP++SA++ +EI+VDKET++MLAALGM+D+ G   V
Sbjct: 61  IQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPG---V 117
Query: 121 EPQSMITPPVFGR---GGGRR 138
           E Q  ++ P + R   GG RR
Sbjct: 118 ERQQEVSAPTYSRPPYGGPRR 138

>pdb|2XZM|V Chain V, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 130

Iteration: 1
 Score =  173 bits (438), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 81/118 (68%), Positives = 101/118 (85%)
Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVK++++ +IE YYS++T DFH NKKIL EVA +PSKRLRNKIAGF+THLMKR
Sbjct: 1   MGRVRTKTVKRAAKSLIEHYYSKLTNDFHFNKKILSEVAQVPSKRLRNKIAGFATHLMKR 60
Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLV 118
           IQKGPVRGISLK+QEEERERR+D+VP++S I  +++ +D ET +ML  LG  +I GLV
Sbjct: 61  IQKGPVRGISLKVQEEERERRLDYVPEKSIIDIEKVTIDNETKEMLKKLGYQNIPGLV 118

>pdb|3IZB|Q Chain Q, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 136

Iteration: 1
 Score =  150 bits (380), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/127 (57%), Positives = 97/127 (76%), Gaps = 4/127 (3%)
Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVK++S+ +IERYY ++TLDF TNK++ +E+A I SKRLRNKIAG++THLMKR
Sbjct: 1   MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKR 60
Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDE----IKVDKETLDMLAALGMSDISG 116
           IQKGPVRGIS KLQEEERER+  +VP+ SA+        + VD +T D++ +LG+     
Sbjct: 61  IQKGPVRGISFKLQEEERERKDQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGLKLPLS 120
Query: 117 LVEVEPQ 123
           ++ V  Q
Sbjct: 121 VINVSAQ 127

>pdb|3ZEY|L Chain L, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 142

Iteration: 1
 Score =  140 bits (353), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/109 (59%), Positives = 92/109 (84%), Gaps = 3/109 (2%)
Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MG++RTKTVK++S+Q++E+Y+S++  DF+ NK+I+ +V I  SK+L+NKIAG++TH+MKR
Sbjct: 1   MGKIRTKTVKRASKQIVEKYFSKLNKDFYQNKRIVMDVTIARSKKLKNKIAGYATHIMKR 60
Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIK---TDEIKVDKETLDML 106
           + +GPVRGISLKLQEEERERRMD+VP+ S +     D I+VDK+TL ML
Sbjct: 61  LARGPVRGISLKLQEEERERRMDYVPEVSHVDQAIQDGIRVDKQTLAML 109

>pdb|1RQ6|A Chain A, Solution Structure Of Ribosomal Protein S17e From Methanobacterium Thermoautotrophicum, Northeast Structural Genomics Consortium Target Tt802 ONTARIO CENTER FOR Structural Proteomics Target Mth0803 Length = 62

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 42/58 (72%)
Query: 1  MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLM 58
          MG +RT  VK+ ++++IE +  + T DF TNKK++EE + + +K LRNKIAG+ T ++
Sbjct: 1  MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITRII 58

>pdb|3J20|S Chain S, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 67

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 45/66 (68%)
Query: 1  MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
          MG++R   +K+ +R+++ +Y +  T DF  NKK ++E+  + SK++RN+IAG+ T L++ 
Sbjct: 1  MGKIRQGFIKRVARELVNKYPNEFTTDFEHNKKKVQELTNVTSKKIRNRIAGYVTKLVRM 60
Query: 61 IQKGPV 66
            +G +
Sbjct: 61 KMEGKI 66

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
3iz6_Q	141	40S ribosomal protein S17 (S17E); eukaryotic ribos	1e-54
2xzm_V	130	RPS17E; ribosome, translation; 3.93A {Tetrahymena	1e-52
3u5c_R	136	RP51A, 40S ribosomal protein S17-A; translation, r	4e-46
1rq6_A	62	30S ribosomal protein S17E; alpha protein, structu	5e-30

>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 141

 Score =  167 bits (423), Expect = 1e-54
 Identities = 101/138 (73%), Positives = 122/138 (88%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKK+SRQVIE+YYSRMTLDFHTNKK+LEEV+I+PSKRLRNK+AGF+THLM+R
Sbjct: 1   MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
           IQ+GPVRGISLKLQEEERERRMDFVP++SA++ +EI+VDKET++MLAALGM+D+ G+   
Sbjct: 61  IQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQ 120

Query: 121 EPQSMITPPVFGRGGGRR 138
           +  S  T      GG RR
Sbjct: 121 QEVSAPTYSRPPYGGPRR 138

>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V Length = 130

 Score =  161 bits (409), Expect = 1e-52
 Identities = 81/125 (64%), Positives = 102/125 (81%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVK++++ +IE YYS++T DFH NKKIL EVA +PSKRLRNKIAGF+THLMKR
Sbjct: 1   MGRVRTKTVKRAAKSLIEHYYSKLTNDFHFNKKILSEVAQVPSKRLRNKIAGFATHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120
           IQKGPVRGISLK+QEEERERR+D+VP++S I  +++ +D ET +ML  LG  +I GLV  
Sbjct: 61  IQKGPVRGISLKVQEEERERRLDYVPEKSIIDIEKVTIDNETKEMLKKLGYQNIPGLVSA 120

Query: 121 EPQSM 125
              + 
Sbjct: 121 SAPAN 125

>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R Length = 136

 Score =  145 bits (366), Expect = 4e-46
 Identities = 73/128 (57%), Positives = 97/128 (75%), Gaps = 4/128 (3%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVK++S+ +IERYY ++TLDF TNK++ +E+A I SKRLRNKIAG++THLMKR
Sbjct: 1   MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDE----IKVDKETLDMLAALGMSDISG 116
           IQKGPVRGIS KLQEEERER+  +VP+ SA+        + VD +T D++ +LG+     
Sbjct: 61  IQKGPVRGISFKLQEEERERKDQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGLKLPLS 120

Query: 117 LVEVEPQS 124
           ++ V  Q 
Sbjct: 121 VINVSAQR 128

>1rq6_A 30S ribosomal protein S17E; alpha protein, structural genomics, protein structure initiative, PSI, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.15.1 Length = 62

 Score =  101 bits (255), Expect = 5e-30
 Identities = 26/62 (41%), Positives = 44/62 (70%)

Query: 1  MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
          MG +RT  VK+ ++++IE +  + T DF TNKK++EE + + +K LRNKIAG+ T ++ +
Sbjct: 1  MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITRIISQ 60

Query: 61 IQ 62
           +
Sbjct: 61 QK 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
3iz6_Q	141	40S ribosomal protein S17 (S17E); eukaryotic ribos	100.0
2xzm_V	130	RPS17E; ribosome, translation; 3.93A {Tetrahymena	100.0
3u5c_R	136	RP51A, 40S ribosomal protein S17-A; translation, r	100.0
3j20_S	67	30S ribosomal protein S17E; archaea, archaeal, KIN	100.0
1rq6_A	62	30S ribosomal protein S17E; alpha protein, structu	100.0

>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.3e-76  Score=456.49  Aligned_cols=125  Identities=77%  Similarity=1.172  Sum_probs=123.8

Q ss_pred             CCcccchhHHHHHHHHHHHhhcccCcchhHHHHHHHHhhccCcccccccccchhhhhhhhhhcCccccceeccchHHHhh
Q 039014            1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERER   80 (139)
Q Consensus         1 MGrVRtk~VKr~a~~iiEkY~~~~t~DF~~NK~vv~eva~I~SKklRNkIAGYVThLmKriqrgpvrGisiklqEEerer   80 (139)
                      ||+||||+||++|++|||+||++||+|||+||++|+|+|+||||+|||+||||||||||+||+|||||||||||||||||
T Consensus         1 MG~Vrtk~VKr~Ar~IiEkY~~~ft~DFetNK~vveeia~I~SKklRNkIAGYVThlmKriq~GpvrgisiklqEeERer   80 (141)
T 3iz6_Q            1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVRGISLKLQEEERER   80 (141)
T ss_dssp             CCCCCCSHHHHHHHHHHTTTCCCCSCCHHHHHHHHHHSSSCCCTTTHHHHHHHHHHHHHHHCSCCCCCSSCCSSCCCCCS
T ss_pred             CCCcccHHHHHHHHHHHHHhhhhhcCcHHhhhHHHHHhccccchhhhhhhhheeeehhhccccCCccccceehhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCccccccCcceechHHHHHHHHcCCCCCCCceeecCCCC
Q 039014           81 RMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSM  125 (139)
Q Consensus        81 rdnyvpe~S~ld~~~ieVD~~T~eMlk~l~~~~~~~~~v~~p~~~  125 (139)
                      |||||||+|+||+|+|+|||||+||||+||||+|||++|+||+++
T Consensus        81 rdnyvpe~S~ld~~~ieVD~dT~eMlk~l~~~~~~~~~~~~~~~~  125 (141)
T 3iz6_Q           81 RMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQEVSA  125 (141)
T ss_dssp             CSSSSCCCSEEEECCCCSSHHHHHHHHHTTTTCCSCEEEECCCSS
T ss_pred             HhccCCccccccccceeECHHHHHHHHHcCCCCCCCceecCCccc
Confidence            999999999999999999999999999999999999999999864

>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V

Probab=100.00  E-value=9.1e-75  Score=441.49  Aligned_cols=125  Identities=65%  Similarity=1.016  Sum_probs=120.8

Q ss_pred             CCcccchhHHHHHHHHHHHhhcccCcchhHHHHHHHHhhccCcccccccccchhhhhhhhhhcCccccceeccchHHHhh
Q 039014            1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERER   80 (139)
Q Consensus         1 MGrVRtk~VKr~a~~iiEkY~~~~t~DF~~NK~vv~eva~I~SKklRNkIAGYVThLmKriqrgpvrGisiklqEEerer   80 (139)
                      ||+|||++||++|++|||+||++||+|||+||++|+|+|+||||+|||+||||||||||++|+|||||||||||||||||
T Consensus         1 MG~Vrtk~VKr~a~~liEkY~~~ft~DFe~NK~vv~eia~I~SKklRNkIAGYVThlmkriq~gpvrgis~klqEeerer   80 (130)
T 2xzm_V            1 MGRVRTKTVKRAAKSLIEHYYSKLTNDFHFNKKILSEVAQVPSKRLRNKIAGFATHLMKRIQKGPVRGISLKVQEEERER   80 (130)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHSBCCSHHHHHHHHHHHHHHHHHTTTSCCTTCCCTTTTHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHhhhcCCHHHhhHHHHHHccCCChhheecccchhhhHhhhcccCcccccccchhHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCccccccCcceechHHHHHHHHcCCCCCCCceeecCCCC
Q 039014           81 RMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSM  125 (139)
Q Consensus        81 rdnyvpe~S~ld~~~ieVD~~T~eMlk~l~~~~~~~~~v~~p~~~  125 (139)
                      |||||||+|+||+++|+|||||+||||+||||++||++|+||+++
T Consensus        81 rd~yvPe~S~ld~~~i~vD~~t~emlk~l~~~~~~~~~~~~~~~~  125 (130)
T 2xzm_V           81 RLDYVPEKSIIDIEKVTIDNETKEMLKKLGYQNIPGLVSASAPAN  125 (130)
T ss_dssp             TTSCCCSSCSSCSSSCCBCHHHHHHHHHHTCSSSSCCBCCCC---
T ss_pred             hhccCCcccccccceeEECHHHHHHHHHcCCCCCCCceecCCCCc
Confidence            999999999999999999999999999999999999999999864

>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R

Probab=100.00  E-value=8.1e-73  Score=433.23  Aligned_cols=125  Identities=58%  Similarity=0.880  Sum_probs=114.6

Q ss_pred             CCcccchhHHHHHHHHHHHhhcccCcchhHHHHHHHHhhccCcccccccccchhhhhhhhhhcCccccceeccchHHHhh
Q 039014            1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERER   80 (139)
Q Consensus         1 MGrVRtk~VKr~a~~iiEkY~~~~t~DF~~NK~vv~eva~I~SKklRNkIAGYVThLmKriqrgpvrGisiklqEEerer   80 (139)
                      ||+||||+||++|++|||+||++||+|||+||++|+|+|+||||+|||+|||||||||||||+|||||||||||||||||
T Consensus         1 MG~Vrtk~VKr~Ar~IiEkY~~~ft~DFetNK~vveeia~I~SKklRNkIAGYVThLmKriq~GpvrgisiklqEeERer   80 (136)
T 3u5c_R            1 MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERER   80 (136)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCSSCCSCHHHHHHHHHHHEECSCHHHHHHHHHHHHHHHHHHTTSCBTTBCCSHHHHHHHT
T ss_pred             CCCccchHHHHHHHHHHHHhhhhhcCcHHhhhHHHHHhhcccchhheeehhhhhhhhhcccccCCcccceeehhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCccccccC----cceechHHHHHHHHcCCCCCCCceeecCCCCC
Q 039014           81 RMDFVPDESAIKTD----EIKVDKETLDMLAALGMSDISGLVEVEPQSMI  126 (139)
Q Consensus        81 rdnyvpe~S~ld~~----~ieVD~~T~eMlk~l~~~~~~~~~v~~p~~~~  126 (139)
                      |||||||+|+||++    +|+|||||+||||+|||+ |||++|+.|....
T Consensus        81 rdnyvpe~S~ld~~~~~~~ieVD~~T~~mlk~l~~~-~~~~~~~~~~~~~  129 (136)
T 3u5c_R           81 KDQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGLK-LPLSVINVSAQRD  129 (136)
T ss_dssp             TCCCCSSCC-----CCSSSCCBCHHHHHHHHHHCCC-CCCCBCCCCC---
T ss_pred             hhccCCcchhhcccccCCceEEChHHHHHHHHcCCC-CCcceeccccccc
Confidence            99999999999998    899999999999999998 9999998876443

>3j20_S 30S ribosomal protein S17E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=6.1e-40  Score=226.03  Aligned_cols=66  Identities=35%  Similarity=0.691  Sum_probs=65.3

Q ss_pred             CCcccchhHHHHHHHHHHHhhcccCcchhHHHHHHHHhhccCcccccccccchhhhhhhhhhcCcc
Q 039014            1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPV   66 (139)
Q Consensus         1 MGrVRtk~VKr~a~~iiEkY~~~~t~DF~~NK~vv~eva~I~SKklRNkIAGYVThLmKriqrgpv   66 (139)
                      ||+|||++||++|++|+|+||++||+|||+||++|+|+|+||||+|||+||||||||||++|+||.
T Consensus         1 MG~vr~k~VKr~a~~liekY~~~~t~DF~~NK~vv~eia~i~SKklRNkIAGYvT~l~k~~~~g~~   66 (67)
T 3j20_S            1 MGKIRQGFIKRVARELVNKYPNEFTTDFEHNKKKVQELTNVTSKKIRNRIAGYVTKLVRMKMEGKI   66 (67)
T ss_dssp             CCCCCCHHHHHHHHHHHHHSGGGCCSCHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCcchHHHHHHHHHHHHHhhhhhcccHHHhhHHHHHHhcccchhhhHHHHHHHHHHHHHHhccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999995

>1rq6_A 30S ribosomal protein S17E; alpha protein, structural genomics, protein structure initiative, PSI, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.15.1

Probab=100.00  E-value=3.9e-37  Score=209.39  Aligned_cols=62  Identities=42%  Similarity=0.682  Sum_probs=60.7

Q ss_pred             CCcccchhHHHHHHHHHHHhhcccCcchhHHHHHHHHhhccCcccccccccchhhhhhhhhh
Q 039014            1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQ   62 (139)
Q Consensus         1 MGrVRtk~VKr~a~~iiEkY~~~~t~DF~~NK~vv~eva~I~SKklRNkIAGYVThLmKriq   62 (139)
                      ||+|||++||++|++|+|+||++||+|||+||++|+|+|+||||+|||+||||||||||+++
T Consensus         1 MG~vr~k~iK~~a~~liekY~~~~t~DF~~NK~~v~e~a~i~SK~lRNkIAGYvT~l~k~~~   62 (62)
T 1rq6_A            1 MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITRIISQQK   62 (62)
T ss_dssp             CCCCCCHHHHHHHHHHHTTSCCCCCCCHHHHHHHHHTTCCCSSTTHHHHHHHHHHHHHHHHC
T ss_pred             CCCcchHHHHHHHHHHHHHhHhHhcCCHHHhhHHHHHHcccccHhHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d1rq6a_	62	a.4.15.1 (A:) ribosomal protein S17e {Methanobacte	2e-31

>d1rq6a_ a.4.15.1 (A:) ribosomal protein S17e {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 62

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Rps17e-like
family: Rps17e-like
domain: ribosomal protein S17e
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score =  104 bits (262), Expect = 2e-31
 Identities = 26/62 (41%), Positives = 44/62 (70%)

Query: 1  MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
          MG +RT  VK+ ++++IE +  + T DF TNKK++EE + + +K LRNKIAG+ T ++ +
Sbjct: 1  MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITRIISQ 60

Query: 61 IQ 62
           +
Sbjct: 61 QK 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1rq6a_	62	ribosomal protein S17e {Methanobacterium thermoaut	100.0

>d1rq6a_ a.4.15.1 (A:) ribosomal protein S17e {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Rps17e-like
family: Rps17e-like
domain: ribosomal protein S17e
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=7.5e-37  Score=206.32  Aligned_cols=62  Identities=42%  Similarity=0.682  Sum_probs=60.9

Q ss_pred             CCcccchhHHHHHHHHHHHhhcccCcchhHHHHHHHHhhccCcccccccccchhhhhhhhhh
Q 039014            1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQ   62 (139)
Q Consensus         1 MGrVRtk~VKr~a~~iiEkY~~~~t~DF~~NK~vv~eva~I~SKklRNkIAGYVThLmKriq   62 (139)
                      ||+|||++||++|++|+|+||++||+|||+||++|+|+|+||||+|||+||||||||||+++
T Consensus         1 MG~Ir~k~iKr~a~~lieky~~~ft~DF~~NK~~v~e~a~i~SKklRN~IAGYvTrl~k~~k   62 (62)
T d1rq6a_           1 MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITRIISQQK   62 (62)
T ss_dssp             CCCCCCHHHHHHHHHHHTTSCCCCCCCHHHHHHHHHTTCCCSSTTHHHHHHHHHHHHHHHHC
T ss_pred             CCCcchhHHHHHHHHHHHHchhHhccCHHHHHHHHHHHhcCCchhHhHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999874