Citrus Sinensis ID: 039068

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
Protein Sequence
MATTCQIFVPPTSNLSRKNLCAAGESFCGSFNIHVEEGNAADILHVLEPPPLPIKPCTKSKYPSRFLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYSFVTKLLQLKTN
Secondary Structure (PSIPRED)
cccEEEEEEcccccccccccccccccEEcEEEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccEEEEcccccEEEccHHHHHHccHHHHHHHccccccccccEEEEccccHHHHHHHHHHHHccccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccccccHHHHHHcccccccEEEEEEEEccccHHcccccccccccccccccccccHHHHcccccHHHHHHHHHHHHccccccEEEEEccccEccHHHHHHHHHcHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHcHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mattcqifvpptsnlsrknlcaagesfcgsfnihveegnaadilhvleppplpikpctkskypsrflhcsfvpketKDVWDKLfkegngadvyavtedkscipvhssilsiaspvlgnilqqskvnndfiyikipgvphEAVYAFVRFLYSSWYSFVTKLLQLKTN
Flexible Loop (DISEMBL)
mattcqifvpptsnlsrKNLCAAGESFCGSFNIHVEEGNAADILHVLEPPPLPIKPCTKSKYPSRFLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYSFVTKLLQLKTN
Low Complexity Region (SEG)
MATTCQIFVPPTSNLSRKNLCAAGESFCGSFNIHVEEGNAADILHVLEPPPLPIKPCTKSKYPSRFLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYSFVTKLLQLKTN
Disordered region (IsUnstruct)
****CQIFVPPTSNLSRKNLCAAGESFCGSFNIHVEEGNAADILHVLEPPPLPIKPCTKSKYPSRFLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYSFVTKLLQ****
Disordered Region (DISOPRED)
**TTCQIFVPPTSNLSRKNLCAAGESFCGSFNIHVEEGNA*****VLEPPPLPI*********************TKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVN*DFIYIKIPGVPHEAVYAFVRFLYSSWYSFVTKLLQLKT*
Disordered Region (DISEMBL)
MATTCQIFVPPTSNLSRKNLCAAGESFCGSFNIHVEEGNAADILHVLEPPPLPIKPCTKSKYPSRFLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYSFVTKLLQLKTN
Disordered Region (DISPRO)
*ATTCQIFVPPTSNLSRKNLCAAGESFCGSFNIHVEEGNAADILHVLEPPPLPIKPCT**KYPSRFLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYSFVTKLLQLKTN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATTCQIFVPPTSNLSRKNLCAAGESFCGSFNIHVEEGNAADILHVLEPPPLPIKPCTKSKYPSRFLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYSFVTKLLQLKTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	166	2.2.26 [Sep-21-2011]
Q9SYL0	364	BTB/POZ and TAZ domain-co	yes	no	0.686	0.313	0.492	9e-25
Q9FJX5	372	BTB/POZ and TAZ domain-co	no	no	0.783	0.349	0.404	3e-18
Q6EJ98	368	BTB/POZ and TAZ domain-co	no	no	0.512	0.230	0.458	1e-16
Q94BN0	364	BTB/POZ and TAZ domain-co	no	no	0.487	0.222	0.417	3e-07
Q9FMK7	365	BTB/POZ and TAZ domain-co	no	no	0.367	0.167	0.468	8e-07

>sp|Q9SYL0|BT3_ARATH BTB/POZ and TAZ domain-containing protein 3 OS=Arabidopsis thaliana GN=BT3 PE=1 SV=2

 Score =  112 bits (281), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 62/126 (49%), Positives = 79/126 (62%), Gaps = 12/126 (9%)

Query: 48  EPPPLPI----KPCTKSKYPSRFLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIP 103
           +PPPLP     +  + ++ PS  +    VPKE  + WDKLFKEG+GAD Y  T++KS  P
Sbjct: 10  KPPPLPCITYQRFQSSTRKPSSLMR--LVPKEALETWDKLFKEGSGADTYVETDNKSHFP 67

Query: 104 VHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYS------FV 157
            HSS+L+ ASPV+  +L QS+  N   Y+KI GVP EAVY F+RFLYSS Y       FV
Sbjct: 68  AHSSVLAAASPVIATLLNQSRDKNGNTYLKIHGVPCEAVYMFIRFLYSSCYEEEEMKKFV 127

Query: 158 TKLLQL 163
             LL L
Sbjct: 128 LHLLVL 133

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Essential for female and male gametophyte development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJX5|BT4_ARATH BTB/POZ and TAZ domain-containing protein 4 OS=Arabidopsis thaliana GN=BT4 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 80/141 (56%), Gaps = 11/141 (7%)

Query: 29  GSFNIHVEEGNAADILHVLEPPPLPIKPCTKSKYPSRFLHCSFVPKETKDVWDKLFKEGN 88
           G  ++H +   +AD   V  PPPLP    +KS    + L  S V   T+D+WD+LF +G 
Sbjct: 4   GCVDLH-QSFKSADSSSVPIPPPLP----SKSDGLKKKLGHSSVSTATRDMWDRLFNDGY 58

Query: 89  GADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRF 148
            ADV   T++ S I  H++IL  AS V+  +L+Q+K +  +  I I GVPH+AV  F+RF
Sbjct: 59  KADVVIYTDNGSIIYAHANILGTASTVIKGMLKQAKRHGKWHTISIRGVPHDAVRVFIRF 118

Query: 149 LYSSWY------SFVTKLLQL 163
           LYSS Y       F+  LL L
Sbjct: 119 LYSSCYEKEEMNEFIMHLLLL 139

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6EJ98|BT5_ARATH BTB/POZ and TAZ domain-containing protein 5 OS=Arabidopsis thaliana GN=BT5 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 55/85 (64%)

Query: 70  SFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDF 129
           SFV K T+D WD++F E +GADV   T+D   I  HS+++ +AS V+  +++Q K  +  
Sbjct: 35  SFVSKATRDSWDRMFDEAHGADVLIHTDDNGLIYAHSNVIGMASDVIRGMMKQHKRKSHR 94

Query: 130 IYIKIPGVPHEAVYAFVRFLYSSWY 154
             I I GVPH A+  F+RFLYSS Y
Sbjct: 95  KSISILGVPHHALRVFIRFLYSSCY 119

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94BN0|BT2_ARATH BTB/POZ and TAZ domain-containing protein 2 OS=Arabidopsis thaliana GN=BT2 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 10/91 (10%)

Query: 72  VPKETKD-----VWDKL-FKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNI----LQ 121
           VP  T+D     + DKL +     +DV  VT D   IP HS +L+ ASPVL NI    ++
Sbjct: 10  VPATTEDDGFSLITDKLSYNLTPTSDVEIVTSDNRRIPAHSGVLASASPVLMNIMKKPMR 69

Query: 122 QSKVNNDFIYIKIPGVPHEAVYAFVRFLYSS 152
           + +       IKI GVP +AV  F++FLYSS
Sbjct: 70  RYRGCGSKRVIKILGVPCDAVSVFIKFLYSS 100

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Play a key role as a component of the TAC1-mediated telomerase activation pathway certainly by targeting a telomerase repressor to degradation. Seems to occupy an integral position in a complex signaling network that perceives, integrates, and responds to multiple, and sometimes competing, signals. Enhances responses to auxin in postgermination and vegetative development. Also negatively regulates ABA- and sugar-mediated inhibition of the germination. Essential for female and male gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMK7|BT1_ARATH BTB/POZ and TAZ domain-containing protein 1 OS=Arabidopsis thaliana GN=BT1 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 91  DVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKV---NNDFIYIKIPGVPHEAVYAFVR 147
           DV  +T  +  IP HS IL+  SPVL NI+++ +     +    IKI GVP +AV  FVR
Sbjct: 26  DVEIITSGRRSIPAHSGILASVSPVLTNIIEKPRKIHGGSSKKVIKILGVPCDAVSVFVR 85

Query: 148 FLYS 151
           FLYS
Sbjct: 86  FLYS 89

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Also targeted for degradation by the 26S proteasome pathway. May be involved in gametophyte development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
296084325	407	unnamed protein product [Vitis vinifera]	0.861	0.351	0.552	7e-40
359478213	410	PREDICTED: BTB/POZ and TAZ domain-contai	0.861	0.348	0.552	7e-40
255587823	414	protein binding protein, putative [Ricin	0.909	0.364	0.514	1e-33
224141105	363	hypothetical protein POPTRDRAFT_825456 [	0.692	0.316	0.547	9e-28
224092888	355	hypothetical protein POPTRDRAFT_216196 [	0.698	0.326	0.524	2e-24
4836923	322	Hypothetical protein [Arabidopsis thalia	0.686	0.354	0.492	4e-23
42561724	364	BTB and TAZ domain protein 3 [Arabidopsi	0.686	0.313	0.492	4e-23
297843356	404	hypothetical protein ARALYDRAFT_887760 [	0.867	0.356	0.398	1e-22
326530364	404	predicted protein [Hordeum vulgare subsp	0.650	0.267	0.445	3e-17
326505552	404	predicted protein [Hordeum vulgare subsp	0.650	0.267	0.445	3e-17

>gi|296084325|emb|CBI24713.3| unnamed protein product [Vitis vinifera]

 Score =  168 bits (425), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 90/163 (55%), Positives = 105/163 (64%), Gaps = 20/163 (12%)

Query: 21  CAAGESFCGSFNIHVEEGNAADILHVLE--------------PPPLPIKPCTKSKYPSRF 66
           C+ GESF GSFNI +EE + A+ L VLE              PPPLP K  TK+ YP R 
Sbjct: 12  CSTGESFSGSFNIAIEETSPANFLPVLEVSNSSVCNNSNIPKPPPLPGKTYTKTSYPKRL 71

Query: 67  LHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVN 126
            +CS VP+ETKD WDKLFK+G GAD++ +TED   IP HS +L +ASPVLGN LQ SKV 
Sbjct: 72  ANCSSVPRETKDTWDKLFKDGYGADIHIITEDGPIIPAHSCVLGVASPVLGNFLQLSKVK 131

Query: 127 NDFIYIKIPGVPHEAVYAFVRFLYSSWYS------FVTKLLQL 163
               YIKIPGVP EA YAF+RFLYSS +       FV  LL L
Sbjct: 132 KGIRYIKIPGVPCEAAYAFIRFLYSSSFEEEEMKKFVLHLLVL 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478213|ref|XP_002278433.2| PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Vitis vinifera]

 Score =  168 bits (425), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 90/163 (55%), Positives = 105/163 (64%), Gaps = 20/163 (12%)

Query: 21  CAAGESFCGSFNIHVEEGNAADILHVLE--------------PPPLPIKPCTKSKYPSRF 66
           C+ GESF GSFNI +EE + A+ L VLE              PPPLP K  TK+ YP R 
Sbjct: 12  CSTGESFSGSFNIAIEETSPANFLPVLEVSNSSVCNNSNIPKPPPLPGKTYTKTSYPKRL 71

Query: 67  LHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVN 126
            +CS VP+ETKD WDKLFK+G GAD++ +TED   IP HS +L +ASPVLGN LQ SKV 
Sbjct: 72  ANCSSVPRETKDTWDKLFKDGYGADIHIITEDGPIIPAHSCVLGVASPVLGNFLQLSKVK 131

Query: 127 NDFIYIKIPGVPHEAVYAFVRFLYSSWYS------FVTKLLQL 163
               YIKIPGVP EA YAF+RFLYSS +       FV  LL L
Sbjct: 132 KGIRYIKIPGVPCEAAYAFIRFLYSSSFEEEEMKKFVLHLLVL 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587823|ref|XP_002534409.1| protein binding protein, putative [Ricinus communis] gi|223525356|gb|EEF27978.1| protein binding protein, putative [Ricinus communis]

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/173 (51%), Positives = 109/173 (63%), Gaps = 22/173 (12%)

Query: 12  TSNLSRKNLCAAGESFCGSFNIHVEEGNAADILHVLE--------------PPPLPIKP- 56
           +++L    L AAGES  G FNIH+ E N+A+IL V +              PPP+P K  
Sbjct: 3   SADLDSSWLSAAGESVGGCFNIHMVEVNSAEILCVQDSPTASVSYSNTIPKPPPVPDKTF 62

Query: 57  CTKSKYPSRFLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVL 116
           C  +   S   +CS VPKE +D WD+LFKEG GADVY +T+ KS IP H ++LSIASPVL
Sbjct: 63  CRANNSKSISQYCS-VPKEIRDTWDRLFKEGYGADVYIITDSKSYIPAHFNVLSIASPVL 121

Query: 117 GNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYS------FVTKLLQL 163
            N+LQQSKV N   +IKI GVP EAVYAF+RFLYSS +       FV  LL L
Sbjct: 122 WNLLQQSKVKNGVRFIKILGVPSEAVYAFIRFLYSSCFEEEEMKKFVLHLLVL 174

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141105|ref|XP_002323915.1| hypothetical protein POPTRDRAFT_825456 [Populus trichocarpa] gi|222866917|gb|EEF04048.1| hypothetical protein POPTRDRAFT_825456 [Populus trichocarpa]

 Score =  128 bits (321), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 63/115 (54%), Positives = 78/115 (67%)

Query: 41  ADILHVLEPPPLPIKPCTKSKYPSRFLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKS 100
           +D  ++ +PPP P K    +    R L    VP+E KD WD+LFKE  G DVY +T+ KS
Sbjct: 2   SDTCNIPKPPPYPNKTSKAANNCKRILETCSVPREIKDTWDRLFKEAYGVDVYIITDSKS 61

Query: 101 CIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYS 155
            IP H ++LSI+SPVLGNILQ+SKV +   YIKI GVP EAVY F+RFLYSS Y 
Sbjct: 62  YIPAHCNVLSISSPVLGNILQRSKVKDGIRYIKILGVPCEAVYMFIRFLYSSCYE 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092888|ref|XP_002309738.1| hypothetical protein POPTRDRAFT_216196 [Populus trichocarpa] gi|222852641|gb|EEE90188.1| hypothetical protein POPTRDRAFT_216196 [Populus trichocarpa]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/122 (52%), Positives = 75/122 (61%), Gaps = 6/122 (4%)

Query: 48  EPPPLPIKPCTKSKYPSRFLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSS 107
           +PPP P      + +  R      VPKETKD WD+LFKE  G+DVY +TE  S IP H +
Sbjct: 6   KPPPYPNTTSKTTSHCKRISASCSVPKETKDTWDRLFKEAYGSDVYIITESNSYIPAHCN 65

Query: 108 ILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYS------FVTKLL 161
           +LS ASPVLG ILQ+SKV N   YI I GV  EAV+ F+RFLYSS Y       FV  LL
Sbjct: 66  VLSTASPVLGTILQRSKVKNGIRYISILGVLCEAVHVFIRFLYSSCYEEDEMKKFVLHLL 125

Query: 162 QL 163
            L
Sbjct: 126 VL 127

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4836923|gb|AAD30625.1|AC007153_17 Hypothetical protein [Arabidopsis thaliana] gi|36955907|gb|AAQ87006.1| BTB and TAZ domain protein 3 [Arabidopsis thaliana]

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/126 (49%), Positives = 79/126 (62%), Gaps = 12/126 (9%)

Query: 48  EPPPLPI----KPCTKSKYPSRFLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIP 103
           +PPPLP     +  + ++ PS  +    VPKE  + WDKLFKEG+GAD Y  T++KS  P
Sbjct: 10  KPPPLPCITYQRFQSSTRKPSSLMR--LVPKEALETWDKLFKEGSGADTYVETDNKSHFP 67

Query: 104 VHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYS------FV 157
            HSS+L+ ASPV+  +L QS+  N   Y+KI GVP EAVY F+RFLYSS Y       FV
Sbjct: 68  AHSSVLAAASPVIATLLNQSRDKNGNTYLKIHGVPCEAVYMFIRFLYSSCYEEEEMKKFV 127

Query: 158 TKLLQL 163
             LL L
Sbjct: 128 LHLLVL 133

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42561724|ref|NP_172060.2| BTB and TAZ domain protein 3 [Arabidopsis thaliana] gi|327507746|sp|Q9SYL0.2|BT3_ARATH RecName: Full=BTB/POZ and TAZ domain-containing protein 3; AltName: Full=BTB and TAZ domain protein 3 gi|332189756|gb|AEE27877.1| BTB and TAZ domain protein 3 [Arabidopsis thaliana]

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/126 (49%), Positives = 79/126 (62%), Gaps = 12/126 (9%)

Query: 48  EPPPLPI----KPCTKSKYPSRFLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIP 103
           +PPPLP     +  + ++ PS  +    VPKE  + WDKLFKEG+GAD Y  T++KS  P
Sbjct: 10  KPPPLPCITYQRFQSSTRKPSSLMR--LVPKEALETWDKLFKEGSGADTYVETDNKSHFP 67

Query: 104 VHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYS------FV 157
            HSS+L+ ASPV+  +L QS+  N   Y+KI GVP EAVY F+RFLYSS Y       FV
Sbjct: 68  AHSSVLAAASPVIATLLNQSRDKNGNTYLKIHGVPCEAVYMFIRFLYSSCYEEEEMKKFV 127

Query: 158 TKLLQL 163
             LL L
Sbjct: 128 LHLLVL 133

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843356|ref|XP_002889559.1| hypothetical protein ARALYDRAFT_887760 [Arabidopsis lyrata subsp. lyrata] gi|297335401|gb|EFH65818.1| hypothetical protein ARALYDRAFT_887760 [Arabidopsis lyrata subsp. lyrata]

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 93/173 (53%), Gaps = 29/173 (16%)

Query: 20  LCAAGESFCGSFNIHVEEGNAA------DILHVLEP---------------PPLPIKPCT 58
           + ++ ++F    +I VEE   +      D+L +L+P               PPLP     
Sbjct: 1   MASSDDTFSQVIDIGVEEEEESFYARDDDVLTLLQPTSPPTISSAKNIPKPPPLPCITYQ 60

Query: 59  KSKYPSRFLHC--SFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVL 116
           + +  +R        VPKE  + WDKLFKEG GAD Y  T++KS  P HSS+L+ ASPV+
Sbjct: 61  RFQASTRKTSSLSRLVPKEAVETWDKLFKEGFGADTYVETDNKSHFPAHSSVLAAASPVM 120

Query: 117 GNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYS------FVTKLLQL 163
             +L QS+  N   Y+KIPGVP EAV+ F+RFLYSS Y       FV  LL L
Sbjct: 121 AKLLNQSRDKNGKTYLKIPGVPCEAVHMFIRFLYSSCYEEEEMKKFVLHLLVL 173

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326530364|dbj|BAJ97608.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 68/110 (61%), Gaps = 2/110 (1%)

Query: 48  EPPPLPIKPCTKSKYP--SRFLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVH 105
           +PPPLP     K +    ++   C  VP+E +D W++LF EG  ADV+  T+D S I  H
Sbjct: 36  DPPPLPETSYGKQRASRNAKEHRCVHVPEEVQDCWNRLFLEGYQADVHVSTDDGSEILSH 95

Query: 106 SSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYS 155
           S IL I SPVL ++L++++V + F  I I GVP EA   F+RFLYSS + 
Sbjct: 96  SCILGIRSPVLRSMLEEARVEHGFRNILISGVPSEAARVFIRFLYSSRFE 145

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326505552|dbj|BAJ95447.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326514354|dbj|BAJ96164.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 68/110 (61%), Gaps = 2/110 (1%)

Query: 48  EPPPLPIKPCTKSKYP--SRFLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVH 105
           +PPPLP     K +    ++   C  VP+E +D W++LF EG  ADV+  T+D S I  H
Sbjct: 36  DPPPLPETSYGKQRASRNAKEHRCVHVPEEVQDCWNRLFLEGYQADVHVSTDDGSEILSH 95

Query: 106 SSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYS 155
           S IL I SPVL ++L++++V + F  I I GVP EA   F+RFLYSS + 
Sbjct: 96  SCILGIRSPVLRSMLEEARVEHGFRNILISGVPSEAARVFIRFLYSSRFE 145

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
TAIR|locus:2031993	364	BT3 "BTB and TAZ domain protei	0.650	0.296	0.5	1.6e-24
TAIR|locus:2120056	368	BT5 "BTB and TAZ domain protei	0.656	0.296	0.436	2.8e-17
TAIR|locus:2101135	364	BT2 "BTB and TAZ domain protei	0.487	0.222	0.417	1.1e-07
TAIR|locus:2161962	365	BT1 "BTB and TAZ domain protei	0.367	0.167	0.484	1.9e-07

TAIR|locus:2031993 BT3 "BTB and TAZ domain protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 57/114 (50%), Positives = 76/114 (66%)

Query:    45 HVLEPPPLPI----KPCTKSKYPSRFLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKS 100
             ++ +PPPLP     +  + ++ PS  +    VPKE  + WDKLFKEG+GAD Y  T++KS
Sbjct:     7 NIPKPPPLPCITYQRFQSSTRKPSSLMR--LVPKEALETWDKLFKEGSGADTYVETDNKS 64

Query:   101 CIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWY 154
               P HSS+L+ ASPV+  +L QS+  N   Y+KI GVP EAVY F+RFLYSS Y
Sbjct:    65 HFPAHSSVLAAASPVIATLLNQSRDKNGNTYLKIHGVPCEAVYMFIRFLYSSCY 118

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0009553 "embryo sac development" evidence=IGI

GO:0009555 "pollen development" evidence=IGI

GO:0009954 "proximal/distal pattern formation" evidence=RCA

GO:0010227 "floral organ abscission" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2120056 BT5 "BTB and TAZ domain protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 2.8e-17, P = 2.8e-17
 Identities = 48/110 (43%), Positives = 65/110 (59%)

Query:    45 HVLEPPPLPIKPCTKSKYPSRFLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPV 104
             +VL PPP P  P  KS         SFV K T+D WD++F E +GADV   T+D   I  
Sbjct:    11 NVLAPPPPP-PPMKKSTDLFMQRSNSFVSKATRDSWDRMFDEAHGADVLIHTDDNGLIYA 69

Query:   105 HSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWY 154
             HS+++ +AS V+  +++Q K  +    I I GVPH A+  F+RFLYSS Y
Sbjct:    70 HSNVIGMASDVIRGMMKQHKRKSHRKSISILGVPHHALRVFIRFLYSSCY 119

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0005737 "cytoplasm" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009954 "proximal/distal pattern formation" evidence=RCA

GO:0010227 "floral organ abscission" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2101135 BT2 "BTB and TAZ domain protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 38/91 (41%), Positives = 50/91 (54%)

Query:    72 VPKETKD-----VWDKL-FKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKV 125
             VP  T+D     + DKL +     +DV  VT D   IP HS +L+ ASPVL NI+++   
Sbjct:    10 VPATTEDDGFSLITDKLSYNLTPTSDVEIVTSDNRRIPAHSGVLASASPVLMNIMKKPMR 69

Query:   126 N----NDFIYIKIPGVPHEAVYAFVRFLYSS 152
                       IKI GVP +AV  F++FLYSS
Sbjct:    70 RYRGCGSKRVIKILGVPCDAVSVFIKFLYSS 100

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0051973 "positive regulation of telomerase activity" evidence=IGI;IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009553 "embryo sac development" evidence=IGI

GO:0009555 "pollen development" evidence=IGI

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0009743 "response to carbohydrate stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0010167 "response to nitrate" evidence=IEP

GO:0010182 "sugar mediated signaling pathway" evidence=IMP

TAIR|locus:2161962 BT1 "BTB and TAZ domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 31/64 (48%), Positives = 40/64 (62%)

Query:    91 DVYAVTEDKSCIPVHSSILSIASPVLGNILQQS-KVNNDFI--YIKIPGVPHEAVYAFVR 147
             DV  +T  +  IP HS IL+  SPVL NI+++  K++       IKI GVP +AV  FVR
Sbjct:    26 DVEIITSGRRSIPAHSGILASVSPVLTNIIEKPRKIHGGSSKKVIKILGVPCDAVSVFVR 85

Query:   148 FLYS 151
             FLYS
Sbjct:    86 FLYS 89


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      166       166   0.00097  107 3  11 22  0.38    32
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  166 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.96u 0.13s 16.09t   Elapsed:  00:00:00
  Total cpu time:  15.96u 0.13s 16.09t   Elapsed:  00:00:00
  Start:  Fri May 10 07:28:29 2013   End:  Fri May 10 07:28:29 2013

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0009553 "embryo sac development" evidence=IGI

GO:0009555 "pollen development" evidence=IGI

GO:0009733 "response to auxin stimulus" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034707001 SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (407 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	166
pfam00651	101	pfam00651, BTB, BTB/POZ domain	4e-06

>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 81  DKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHE 140
           ++L + G   DV  V  DK     H ++L+  SP    +       N  + I +  V  E
Sbjct: 2   NELRENGELCDVTLVVGDKE-FHAHKAVLAACSPYFKALF----TGNKEVEITLEDVSPE 56

Query: 141 AVYAFVRFLYSS 152
              A + F+Y+ 
Sbjct: 57  DFEALLEFIYTG 68

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	166
PHA02713	557	hypothetical protein; Provisional	99.9
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.88
PHA02790	480	Kelch-like protein; Provisional	99.84
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	99.8
PHA03098	534	kelch-like protein; Provisional	99.75
KOG4350	620	consensus Uncharacterized conserved protein, conta	99.69
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	99.67
KOG2075	521	consensus Topoisomerase TOP1-interacting protein B	99.42
KOG4591	280	consensus Uncharacterized conserved protein, conta	98.89
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.72
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.65
KOG2838	401	consensus Uncharacterized conserved protein, conta	98.17
KOG4682	488	consensus Uncharacterized conserved protein, conta	98.1
KOG2838	401	consensus Uncharacterized conserved protein, conta	97.85
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	97.64
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	97.1
KOG3473	112	consensus RNA polymerase II transcription elongati	96.71
KOG1778	319	consensus CREB binding protein/P300 and related TA	96.57
KOG0511	516	consensus Ankyrin repeat protein [General function	96.51
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	96.08
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	95.37
KOG0511	516	consensus Ankyrin repeat protein [General function	93.14
KOG1724	162	consensus SCF ubiquitin ligase, Skp1 component [Po	89.15
KOG2716	230	consensus Polymerase delta-interacting protein PDI	89.14
KOG2714	465	consensus SETA binding protein SB1 and related pro	87.02

>PHA02713 hypothetical protein; Provisional

Probab=99.90  E-value=4.2e-24  Score=196.40  Aligned_cols=96  Identities=19%  Similarity=0.236  Sum_probs=87.6

Q ss_pred             CCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCc-cceEEeCCCCHHHHHHHHHh
Q 039068           70 SFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNND-FIYIKIPGVPHEAVYAFVRF  148 (166)
Q Consensus        70 ~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~-~~~I~I~gV~~~~l~~lL~F  148 (166)
                      ..|+..+++.|++||+++.+|||+|++++|++|+|||+||||+||||++||+++|+|.. +++|.|+|+++++|+.+|+|
T Consensus         6 ~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y   85 (557)
T PHA02713          6 IKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQY   85 (557)
T ss_pred             hhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHH
Confidence            45788999999999999999999999965789999999999999999999999999764 78899999999999999999


Q ss_pred             HcCCchh--HHHHhhcccC
Q 039068          149 LYSSWYS--FVTKLLQLKT  165 (166)
Q Consensus       149 lYTg~i~--~a~~LL~lah  165 (166)
                      +|||+++  +++.||.+|+
T Consensus        86 ~Yt~~i~~~nv~~ll~aA~  104 (557)
T PHA02713         86 LYNRHISSMNVIDVLKCAD  104 (557)
T ss_pred             hcCCCCCHHHHHHHHHHHH
Confidence            9999987  7777777764

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.88  E-value=6.1e-23  Score=190.00  Aligned_cols=100  Identities=19%  Similarity=0.217  Sum_probs=91.6

Q ss_pred             cCCCCCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHH
Q 039068           65 RFLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYA  144 (166)
Q Consensus        65 ~~~~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~  144 (166)
                      .......|+..+++.|+.||+++.+|||+|.++ +++|+|||+||||+|||||+||+++++|..+++|.|.||++++|+.
T Consensus        12 ~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~-~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~   90 (571)
T KOG4441|consen   12 SEFTDPSHSKFLLQGLNELREEGLLCDVTLLVG-DREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLEL   90 (571)
T ss_pred             cccccHHHHHHHHHHHHHHHHhCCCceEEEEEC-CeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHH
Confidence            344567799999999999999999999999995 5999999999999999999999999999999999999999999999


Q ss_pred             HHHhHcCCchh----HHHHhhcccC
Q 039068          145 FVRFLYSSWYS----FVTKLLQLKT  165 (166)
Q Consensus       145 lL~FlYTg~i~----~a~~LL~lah  165 (166)
                      +|+|+|||+++    +|+.||.+|+
T Consensus        91 ll~y~Yt~~i~i~~~nVq~ll~aA~  115 (571)
T KOG4441|consen   91 LLDYAYTGKLEISEDNVQELLEAAS  115 (571)
T ss_pred             HHHHhhcceEEechHhHHHHHHHHH
Confidence            99999999997    7777776653

>PHA02790 Kelch-like protein; Provisional

Probab=99.84  E-value=1.5e-21  Score=176.00  Aligned_cols=86  Identities=19%  Similarity=0.102  Sum_probs=74.0

Q ss_pred             HHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEe--CCCCHHHHHHHHHhHcCCch
Q 039068           77 KDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKI--PGVPHEAVYAFVRFLYSSWY  154 (166)
Q Consensus        77 l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I--~gV~~~~l~~lL~FlYTg~i  154 (166)
                      .+..-.||.+|.+|||++.+  |++|+|||+||||+|||||+||+++|+|+++ .|.+  .||++++|+.||+|+|||++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~--~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l   86 (480)
T PHA02790         10 CKNILALSMTKKFKTIIEAI--GGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKV   86 (480)
T ss_pred             hhhHHHHHhhhhhceEEEEc--CcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeE
Confidence            34556789999999999886  5789999999999999999999999998854 4655  49999999999999999999


Q ss_pred             h----HHHHhhcccC
Q 039068          155 S----FVTKLLQLKT  165 (166)
Q Consensus       155 ~----~a~~LL~lah  165 (166)
                      .    +|+.||++|.
T Consensus        87 ~it~~nV~~ll~aA~  101 (480)
T PHA02790         87 YIDSHNVVNLLRASI  101 (480)
T ss_pred             EEecccHHHHHHHHH
Confidence            7    7777776653

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=99.80  E-value=6.3e-20  Score=131.77  Aligned_cols=86  Identities=29%  Similarity=0.410  Sum_probs=73.2

Q ss_pred             HHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCC-CCCCccceEEeCCCCHHHHHHHHHhHcCCchh---
Q 039068           80 WDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQS-KVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYS---  155 (166)
Q Consensus        80 l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~-~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~i~---  155 (166)
                      |+++++++.++|++|.++||..|+|||.||+++||||+.||+.. +++....+|.+.++++++++.+|+|+|+|++.   
T Consensus         1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~   80 (111)
T PF00651_consen    1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINS   80 (111)
T ss_dssp             HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred             ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCH
Confidence            68899999999999999658999999999999999999999998 56666668999999999999999999999764   


Q ss_pred             --HHHHhhcccC
Q 039068          156 --FVTKLLQLKT  165 (166)
Q Consensus       156 --~a~~LL~lah  165 (166)
                        ++..+|.+|+
T Consensus        81 ~~~~~~ll~lA~   92 (111)
T PF00651_consen   81 DENVEELLELAD   92 (111)
T ss_dssp             TTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence              6777776654

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>PHA03098 kelch-like protein; Provisional

Probab=99.75  E-value=1.1e-18  Score=157.10  Aligned_cols=76  Identities=16%  Similarity=0.190  Sum_probs=69.2

Q ss_pred             hCCCccEEEEc-CCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCchh----HHHHh
Q 039068           86 EGNGADVYAVT-EDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYS----FVTKL  160 (166)
Q Consensus        86 e~~l~DV~I~v-~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~i~----~a~~L  160 (166)
                      ++.+|||+|.+ .+|++|+|||+||||+||||++||+++++   +.+|.|++ ++++|+.||+|+|||+++    ++.+|
T Consensus         6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~l   81 (534)
T PHA03098          6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDI   81 (534)
T ss_pred             cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHH
Confidence            88999999987 35799999999999999999999999987   56799999 999999999999999986    88888


Q ss_pred             hcccC
Q 039068          161 LQLKT  165 (166)
Q Consensus       161 L~lah  165 (166)
                      |.+|+
T Consensus        82 l~~A~   86 (534)
T PHA03098         82 LSIAN   86 (534)
T ss_pred             HHHHH
Confidence            88775

>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.69  E-value=1.3e-17  Score=150.68  Aligned_cols=93  Identities=24%  Similarity=0.359  Sum_probs=85.1

Q ss_pred             hHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCC
Q 039068           73 PKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSS  152 (166)
Q Consensus        73 ~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg  152 (166)
                      +...-+.+++|+-...++||++++++ ++|||||+||||||.|||||+-++|.|+.++.|.+++-..++|+++|+|+|||
T Consensus        28 ~~~fS~~~~~l~~~e~y~DVtfvve~-~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg  106 (620)
T KOG4350|consen   28 SNNFSQSFDELFTSEDYSDVTFVVED-TRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTG  106 (620)
T ss_pred             ccchhHHHHHHhhcCcccceEEEEec-cccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhc
Confidence            33446789999999999999999965 78999999999999999999999999999999999999999999999999999


Q ss_pred             chh-------HHHHhhcccCC
Q 039068          153 WYS-------FVTKLLQLKTN  166 (166)
Q Consensus       153 ~i~-------~a~~LL~lah~  166 (166)
                      ++.       -.++.|.||||
T Consensus       107 ~~~l~~~~ed~lld~LslAh~  127 (620)
T KOG4350|consen  107 KIDLAGVEEDILLDYLSLAHR  127 (620)
T ss_pred             ceecccchHHHHHHHHHHHHh
Confidence            987       57788888886

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=99.67  E-value=1.6e-16  Score=107.19  Aligned_cols=74  Identities=24%  Similarity=0.321  Sum_probs=65.8

Q ss_pred             cEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCchh----HHHHhhcccC
Q 039068           91 DVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYS----FVTKLLQLKT  165 (166)
Q Consensus        91 DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~i~----~a~~LL~lah  165 (166)
                      ||+|.+ +|+.|++||.+|+++|+||++||.+.+.+.....|.+.++++++++.+|+|+|++++.    ++..++.+|+
T Consensus         1 dv~i~v-~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~   78 (90)
T smart00225        1 DVTLVV-GGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELAD   78 (90)
T ss_pred             CeEEEE-CCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHH
Confidence            789988 5789999999999999999999999887767788999999999999999999999986    6677776654

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]

Probab=99.42  E-value=6.5e-13  Score=121.49  Aligned_cols=101  Identities=24%  Similarity=0.295  Sum_probs=89.3

Q ss_pred             CcCCCCCCchHHHHHHHHHHHhhCCCccEEEEcCC----CeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCH
Q 039068           64 SRFLHCSFVPKETKDVWDKLFKEGNGADVYAVTED----KSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPH  139 (166)
Q Consensus        64 ~~~~~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~----G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~  139 (166)
                      +.+.+|+---..+.+....|+++..++||.+++++    -+.|||||-|||..|.+|.+||.+++.+....+|.+++|++
T Consensus        89 ~~~~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvep  168 (521)
T KOG2075|consen   89 RGIPNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEP  168 (521)
T ss_pred             ccCcccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcCh
Confidence            35777888888899999999999999999999863    36799999999999999999999999988678999999999


Q ss_pred             HHHHHHHHhHcCCchh----HHHHhhccc
Q 039068          140 EAVYAFVRFLYSSWYS----FVTKLLQLK  164 (166)
Q Consensus       140 ~~l~~lL~FlYTg~i~----~a~~LL~la  164 (166)
                      +++..+|+|+|++.+.    +++.+|.+|
T Consensus       169 aaFl~~L~flYsdev~~~~dtvi~tl~~A  197 (521)
T KOG2075|consen  169 AAFLAFLRFLYSDEVKLAADTVITTLYAA  197 (521)
T ss_pred             hHhHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence            9999999999999886    666666554

>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=98.89  E-value=1.7e-09  Score=91.20  Aligned_cols=83  Identities=13%  Similarity=0.138  Sum_probs=67.6

Q ss_pred             CCchHHHHHHHHHHHhhCCCccEEEEcCC--CeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHH
Q 039068           70 SFVPKETKDVWDKLFKEGNGADVYAVTED--KSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVR  147 (166)
Q Consensus        70 ~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~--G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~  147 (166)
                      .+.+..++..-..|....+++|+++.++|  .+.|||||.||||||++.+  |.++..| ......+.+++++++...|+
T Consensus        47 dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de-kse~~~~dDad~Ea~~t~iR  123 (280)
T KOG4591|consen   47 DSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE-KSEELDLDDADFEAFHTAIR  123 (280)
T ss_pred             hhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc-chhhhcccccCHHHHHHhhe
Confidence            34577788888999999999999999863  3679999999999999876  3333322 23456778999999999999


Q ss_pred             hHcCCchh
Q 039068          148 FLYSSWYS  155 (166)
Q Consensus       148 FlYTg~i~  155 (166)
                      |+||++++
T Consensus       124 WIYTDEid  131 (280)
T KOG4591|consen  124 WIYTDEID  131 (280)
T ss_pred             eeeccccc
Confidence            99999987

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.72  E-value=2.4e-09  Score=103.71  Aligned_cols=67  Identities=16%  Similarity=0.208  Sum_probs=55.4

Q ss_pred             CCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCC--HHHHHHHHHhHc-CCchh
Q 039068           87 GNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVP--HEAVYAFVRFLY-SSWYS  155 (166)
Q Consensus        87 ~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~--~~~l~~lL~FlY-Tg~i~  155 (166)
                      ...-|++|...||++++|||++|+||+.||..||..-|.|+..  |.+.+++  .+.|+.+|+|+| +.+.+
T Consensus       708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p~~~e~m~ivLdylYs~d~~~  777 (1267)
T KOG0783|consen  708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSS--ITVNLSPLTVEHMSIVLDYLYSDDKVE  777 (1267)
T ss_pred             ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhcc--ceeecCcchHHHHHHHHHHHHccchHH
Confidence            3455777777789999999999999999999999998877654  6666666  999999999999 45554

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.65  E-value=2.3e-08  Score=97.10  Aligned_cols=77  Identities=23%  Similarity=0.280  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhhCC----CccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCcc------------ceEEeCCCCH
Q 039068           76 TKDVWDKLFKEGN----GADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDF------------IYIKIPGVPH  139 (166)
Q Consensus        76 ~l~~l~~Lr~e~~----l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~------------~~I~I~gV~~  139 (166)
                      .-..+.+|..+..    .-||++.| |++-|+|||.||+++|++||.+|....+.+..            .+|.+.++++
T Consensus       541 fe~sf~kLl~e~~~~ds~hDVtf~v-g~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p  619 (1267)
T KOG0783|consen  541 FEGSFPKLLSEENYKDSFHDVTFYV-GTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPP  619 (1267)
T ss_pred             chhhhHHHhhccccccccceEEEEe-cCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCH
Confidence            3445777776655    56899999 57899999999999999999999775543221            2456889999


Q ss_pred             HHHHHHHHhHcCCc
Q 039068          140 EAVYAFVRFLYSSW  153 (166)
Q Consensus       140 ~~l~~lL~FlYTg~  153 (166)
                      .+|+.||+|+||+.
T Consensus       620 ~mfe~lL~~iYtdt  633 (1267)
T KOG0783|consen  620 LMFEILLHYIYTDT  633 (1267)
T ss_pred             HHHHHHHHHHhccc
Confidence            99999999999994

>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=98.17  E-value=2.2e-06  Score=75.36  Aligned_cols=79  Identities=16%  Similarity=0.298  Sum_probs=59.8

Q ss_pred             HHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCc--cceEEeCCCCHHHHHHHHHhHcCCc
Q 039068           76 TKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNND--FIYIKIPGVPHEAVYAFVRFLYSSW  153 (166)
Q Consensus        76 ~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~--~~~I~I~gV~~~~l~~lL~FlYTg~  153 (166)
                      .+..+..+....+..||-|... -..|||||++||+|+|+|+-+...+..-..  .-.|+.-|++-+++++||+|+|||+
T Consensus       117 f~kD~ad~ye~k~c~dldiiFk-eTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgE  195 (401)
T KOG2838|consen  117 FLKDFADGYERKVCGDLDIIFK-ETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGE  195 (401)
T ss_pred             HHHHHhhhhheeeeccceeeee-eccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcc
Confidence            4444555555556778877764 357999999999999999999877543211  2246778999999999999999998


Q ss_pred             hh
Q 039068          154 YS  155 (166)
Q Consensus       154 i~  155 (166)
                      .-
T Consensus       196 fg  197 (401)
T KOG2838|consen  196 FG  197 (401)
T ss_pred             cc
Confidence            63

>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=98.10  E-value=3.4e-06  Score=76.87  Aligned_cols=83  Identities=22%  Similarity=0.262  Sum_probs=71.3

Q ss_pred             HHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEE--e--CCCCHHHHHHHHHhHcCCch
Q 039068           79 VWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIK--I--PGVPHEAVYAFVRFLYSSWY  154 (166)
Q Consensus        79 ~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~--I--~gV~~~~l~~lL~FlYTg~i  154 (166)
                      -++.|+++|.-+||.|.+ =|.+-..||.-| ..|+||++||.+.++|+....|.  |  +.|+.+++...+.=+|.+++
T Consensus        59 iyq~lf~q~enSDv~l~a-lg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEv  136 (488)
T KOG4682|consen   59 IYQNLFLQGENSDVILEA-LGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEV  136 (488)
T ss_pred             HHHHHHhcCCCcceehhh-ccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhe
Confidence            478899999999999987 478999999999 68999999999999998776554  3  46999999999999999998


Q ss_pred             h----------HHHHhhcc
Q 039068          155 S----------FVTKLLQL  163 (166)
Q Consensus       155 ~----------~a~~LL~l  163 (166)
                      +          -++++||+
T Consensus       137 eI~l~dv~gvlAaA~~lql  155 (488)
T KOG4682|consen  137 EIKLSDVVGVLAAACLLQL  155 (488)
T ss_pred             eccHHHHHHHHHHHHHHHH
Confidence            7          45666665

>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=97.85  E-value=1.7e-05  Score=69.84  Aligned_cols=78  Identities=19%  Similarity=0.232  Sum_probs=53.4

Q ss_pred             HHHHHHHhhCCCcc-EEEEcCCCe--------------eehhhHHHHhhcCHHHHHhhcCCCCC---------CccceEE
Q 039068           78 DVWDKLFKEGNGAD-VYAVTEDKS--------------CIPVHSSILSIASPVLGNILQQSKVN---------NDFIYIK  133 (166)
Q Consensus        78 ~~l~~Lr~e~~l~D-V~I~v~~G~--------------~i~AHr~VLAA~SpYFraMF~~~~~E---------~~~~~I~  133 (166)
                      ..+..|++.-..-| |.+.+.||+              +|.||++|.||||++||.++....++         +++++|.
T Consensus       224 ~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIi  303 (401)
T KOG2838|consen  224 EDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRII  303 (401)
T ss_pred             HHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceee
Confidence            34556666555444 455555554              59999999999999999999764332         1234555


Q ss_pred             eCC--CCHHHHHHHHHhHcCCchh
Q 039068          134 IPG--VPHEAVYAFVRFLYSSWYS  155 (166)
Q Consensus       134 I~g--V~~~~l~~lL~FlYTg~i~  155 (166)
                      +.+  ++..---.|+.|+||++++
T Consensus       304 fdE~I~PkafA~i~lhclYTD~lD  327 (401)
T KOG2838|consen  304 FDELIFPKAFAPIFLHCLYTDRLD  327 (401)
T ss_pred             chhhhcchhhhhhhhhhheecccc
Confidence            543  4444556789999999987

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=97.64  E-value=0.0002  Score=48.42  Aligned_cols=56  Identities=18%  Similarity=0.227  Sum_probs=46.7

Q ss_pred             EEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHc
Q 039068           92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLY  150 (166)
Q Consensus        92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlY  150 (166)
                      |+|+..||+.|.+-+.++ -.|..++.|+.....+..  .|.+++|++++|+.+|+|++
T Consensus         3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~   58 (62)
T PF03931_consen    3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCE   58 (62)
T ss_dssp             EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHH
T ss_pred             EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHH
Confidence            678888999999998886 599999999976433222  79999999999999999986

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>smart00512 Skp1 Found in Skp1 protein family

Probab=97.10  E-value=0.0011  Score=48.66  Aligned_cols=60  Identities=12%  Similarity=0.222  Sum_probs=49.7

Q ss_pred             cEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCC-ccceEEeCCCCHHHHHHHHHhHcC
Q 039068           91 DVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNN-DFIYIKIPGVPHEAVYAFVRFLYS  151 (166)
Q Consensus        91 DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~-~~~~I~I~gV~~~~l~~lL~FlYT  151 (166)
                      -|+|...||.+|.+.+.+. ..|..++.|+.....+. ....|.+++|++.+|+.+++|++-
T Consensus         3 ~v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~   63 (104)
T smart00512        3 YIKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEH   63 (104)
T ss_pred             eEEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHH
Confidence            3788888999999999977 69999999997643322 225799999999999999999974

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]

Probab=96.71  E-value=0.0041  Score=47.25  Aligned_cols=73  Identities=15%  Similarity=0.225  Sum_probs=59.0

Q ss_pred             EEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCC--CCccceEEeCCCCHHHHHHHHHhH-----cCCch-h--------
Q 039068           92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQSKV--NNDFIYIKIPGVPHEAVYAFVRFL-----YSSWY-S--------  155 (166)
Q Consensus        92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~--E~~~~~I~I~gV~~~~l~~lL~Fl-----YTg~i-~--------  155 (166)
                      |+|+.+||.+|-.-|- +|.-|+-.|+||.+...  |.+..+|.+.++++.+++.+.+|+     ||+.- +        
T Consensus        19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp   97 (112)
T KOG3473|consen   19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP   97 (112)
T ss_pred             eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCH
Confidence            5777778888877554 57889999999997644  566778999999999999999997     77651 1        


Q ss_pred             -HHHHhhcccC
Q 039068          156 -FVTKLLQLKT  165 (166)
Q Consensus       156 -~a~~LL~lah  165 (166)
                       ++++||.+|.
T Consensus        98 emaleLL~aAn  108 (112)
T KOG3473|consen   98 EMALELLMAAN  108 (112)
T ss_pred             HHHHHHHHHhh
Confidence             8999998764

>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]

Probab=96.57  E-value=0.00067  Score=60.08  Aligned_cols=74  Identities=46%  Similarity=0.582  Sum_probs=61.6

Q ss_pred             cEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCchh------HHHHhhccc
Q 039068           91 DVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYS------FVTKLLQLK  164 (166)
Q Consensus        91 DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~i~------~a~~LL~la  164 (166)
                      |+.+..+++..|++|+.+|+..||.|..+.......+..+.+.+.+++..++..+++|+|.+ ++      +..|||.+.
T Consensus        27 ~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~  105 (319)
T KOG1778|consen   27 DVEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALS  105 (319)
T ss_pred             chhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhh
Confidence            55555556678999999999999999988776644456678999999999999999999999 65      788888875


Q ss_pred             C
Q 039068          165 T  165 (166)
Q Consensus       165 h  165 (166)
                      |
T Consensus       106 ~  106 (319)
T KOG1778|consen  106 H  106 (319)
T ss_pred             h
Confidence            4

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.51  E-value=0.0017  Score=59.42  Aligned_cols=55  Identities=13%  Similarity=0.138  Sum_probs=44.6

Q ss_pred             eeehhhHHHHhhcCHHHHHhhcCCCCCCc-cc---eEEeCCCCHHHHHHHHHhHcCCchh
Q 039068          100 SCIPVHSSILSIASPVLGNILQQSKVNND-FI---YIKIPGVPHEAVYAFVRFLYSSWYS  155 (166)
Q Consensus       100 ~~i~AHr~VLAA~SpYFraMF~~~~~E~~-~~---~I~I~gV~~~~l~~lL~FlYTg~i~  155 (166)
                      .+.|||++++. |..||+.||.+...|+. ..   ...++.....+++.+++|+|+.+-+
T Consensus       301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~td  359 (516)
T KOG0511|consen  301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTD  359 (516)
T ss_pred             ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhccccc
Confidence            46999999995 55699999999987732 22   3456777889999999999999876

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.08  E-value=0.00078  Score=56.75  Aligned_cols=65  Identities=12%  Similarity=0.071  Sum_probs=52.4

Q ss_pred             CccEEEEcC-CCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCc
Q 039068           89 GADVYAVTE-DKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSW  153 (166)
Q Consensus        89 l~DV~I~v~-~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~  153 (166)
                      +-|+.+..+ +|..|.+|+.+++|+|++|++|+..+..+.....+.+.+++++.++++..|.|+..
T Consensus        98 ~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s  163 (297)
T KOG1987|consen   98 MLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPS  163 (297)
T ss_pred             ccChHHhhcccCcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEecc
Confidence            355543322 24569999999999999999999988766666667999999999999999999953

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=95.37  E-value=0.017  Score=41.00  Aligned_cols=62  Identities=13%  Similarity=0.088  Sum_probs=47.9

Q ss_pred             EEEEcCCCeeehhhHHHHh-hcCHHHHHhhcCC---CCCCccceEEeCCCCHHHHHHHHHhHcC-Cchh
Q 039068           92 VYAVTEDKSCIPVHSSILS-IASPVLGNILQQS---KVNNDFIYIKIPGVPHEAVYAFVRFLYS-SWYS  155 (166)
Q Consensus        92 V~I~v~~G~~i~AHr~VLA-A~SpYFraMF~~~---~~E~~~~~I~I~gV~~~~l~~lL~FlYT-g~i~  155 (166)
                      |+|.| ||+.|.+=+..|. ....+|..||...   ........+-| |-+++.++.||+|+-+ +.+.
T Consensus         1 V~lNV-GG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~   67 (94)
T PF02214_consen    1 VRLNV-GGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLP   67 (94)
T ss_dssp             EEEEE-TTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB-
T ss_pred             CEEEE-CCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccC
Confidence            68899 6899999999998 6677999999864   22234455655 7899999999999999 5654

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.14  E-value=0.03  Score=51.57  Aligned_cols=62  Identities=16%  Similarity=0.028  Sum_probs=47.3

Q ss_pred             CccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCC
Q 039068           89 GADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSS  152 (166)
Q Consensus        89 l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg  152 (166)
                      ..|+++....|+.|-|||..|+|||.||..-+-..+  ...+.|.=..|=++++..|+.|+|-.
T Consensus       149 ~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~v~~~~f~~flk~lyl~  210 (516)
T KOG0511|consen  149 CHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHRVILSAFSPFLKQLYLN  210 (516)
T ss_pred             ccchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhhhhHhhhhHHHHHHHHh
Confidence            357777777899999999999999999875443322  13345666778899999999999976

>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]

Probab=89.15  E-value=1  Score=36.50  Aligned_cols=61  Identities=10%  Similarity=0.127  Sum_probs=48.0

Q ss_pred             EEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCc
Q 039068           92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSW  153 (166)
Q Consensus        92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~  153 (166)
                      +.|...||+.|.+-+.++ -.|..+++++...........|.|+.|.+.+|..+|+|+|--+
T Consensus         7 ikL~SsDG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk   67 (162)
T KOG1724|consen    7 IKLESSDGEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHK   67 (162)
T ss_pred             EEEEccCCceeehhHHHH-HHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcc
Confidence            456667899999987765 7888999998765332222679999999999999999998743

>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]

Probab=89.14  E-value=0.87  Score=38.90  Aligned_cols=62  Identities=13%  Similarity=0.054  Sum_probs=50.9

Q ss_pred             EEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCC-CCcc-ceEEeCCCCHHHHHHHHHhHcCCchh
Q 039068           92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQSKV-NNDF-IYIKIPGVPHEAVYAFVRFLYSSWYS  155 (166)
Q Consensus        92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~-E~~~-~~I~I~gV~~~~l~~lL~FlYTg~i~  155 (166)
                      |.|.| ||..|...+.=|---.-||++||..++. +... ..|-| |-+|.=+..||+|+=.|.+.
T Consensus         7 vkLnv-GG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~   70 (230)
T KOG2716|consen    7 VKLNV-GGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVD   70 (230)
T ss_pred             EEEec-CCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhccccc
Confidence            45788 6899999999999999999999998863 3333 34554 88999999999999988765

>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]

Probab=87.02  E-value=1.3  Score=41.17  Aligned_cols=63  Identities=8%  Similarity=-0.016  Sum_probs=49.3

Q ss_pred             EEEEcCCCeeehhhHHHHhhcC--HHHHHhhcCCCCC-CccceEEeCCCCHHHHHHHHHhHcCCchh
Q 039068           92 VYAVTEDKSCIPVHSSILSIAS--PVLGNILQQSKVN-NDFIYIKIPGVPHEAVYAFVRFLYSSWYS  155 (166)
Q Consensus        92 V~I~v~~G~~i~AHr~VLAA~S--pYFraMF~~~~~E-~~~~~I~I~gV~~~~l~~lL~FlYTg~i~  155 (166)
                      |.|.| +|+.|..-+.-|+-.-  .+|.++|+..+.. +.....-.-|-+|+.|..||+||=||++.
T Consensus        13 V~lNV-GGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~   78 (465)
T KOG2714|consen   13 VKLNV-GGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLD   78 (465)
T ss_pred             EEEec-CceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCC
Confidence            46888 6899999999887655  6999999876542 22333344589999999999999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	166
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	4e-04
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	5e-04

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 12/77 (15%)

Query: 83  LFKEGNGADVY---AVTEDKSCIPVHSSILSIASPV----LGNILQQSKVNNDFIYIKIP 135
           +F     ADV+           +P H  +L++ S V        L + K       I IP
Sbjct: 2   MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSE-----IHIP 56

Query: 136 GVPHEAVYAFVRFLYSS 152
            V   A    ++++YS 
Sbjct: 57  DVEPAAFLILLKYMYSD 73

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 82  KLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEA 141
            L++     D       +     H +IL+  SPV   + +     +    ++I  V  E 
Sbjct: 167 GLWENSRFTDCCLCVAGQ-EFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEV 225

Query: 142 VYAFVRFLYSS 152
               + F+Y+ 
Sbjct: 226 FKEMMCFIYTG 236

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	166
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	99.93
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	99.93
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	99.92
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	99.92
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	99.92
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	99.91
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	99.91
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	99.91
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.91
2vpk_A	116	Myoneurin; transcription regulation, transcription	99.91
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	99.9
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	99.9
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	99.9
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	99.9
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	99.89
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	99.89
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	99.89
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	99.88
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	99.87
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.87
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	99.45
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	99.33
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	98.74
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	98.64
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	98.57
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	98.47
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	97.92
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	97.75
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	96.98
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	89.65
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	88.48

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=99.93  E-value=1.8e-26  Score=169.06  Aligned_cols=96  Identities=19%  Similarity=0.206  Sum_probs=85.0

Q ss_pred             CCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHh
Q 039068           69 CSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRF  148 (166)
Q Consensus        69 ~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~F  148 (166)
                      ++.|+..+++.|++||+++.+|||+|.+ +|++|+|||+|||++||||++||.+++.|+....|.|+++++++++.+|+|
T Consensus         5 ~~~h~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~   83 (120)
T 2if5_A            5 FPDHSSDILSGLNEQRTQGLLCDVVILV-EGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDF   83 (120)
T ss_dssp             CTTHHHHHHHHHHHHHHTTCSCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhcCCCCCeEEEE-CCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHH
Confidence            4678999999999999999999999999 578999999999999999999999999988889999999999999999999


Q ss_pred             HcCCchh----HHHHhhcccC
Q 039068          149 LYSSWYS----FVTKLLQLKT  165 (166)
Q Consensus       149 lYTg~i~----~a~~LL~lah  165 (166)
                      +|||++.    ++..||.+|+
T Consensus        84 ~Yt~~~~~~~~~~~~ll~~A~  104 (120)
T 2if5_A           84 AYTATLTVSTANVGDILSAAR  104 (120)
T ss_dssp             HHHSCCCCCGGGHHHHHHHHH
T ss_pred             HcCCCCccCHHHHHHHHHHHH
Confidence            9999986    7888887764

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=99.93  E-value=4.5e-26  Score=168.24  Aligned_cols=95  Identities=13%  Similarity=0.149  Sum_probs=86.0

Q ss_pred             CCCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCC-CCHHHHHHHH
Q 039068           68 HCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPG-VPHEAVYAFV  146 (166)
Q Consensus        68 ~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~g-V~~~~l~~lL  146 (166)
                      ....|+..+++.|++||+++.+|||+|.+ +|+.|+|||+|||++|+||++||.+.+.|  ...|.+++ +++++++.+|
T Consensus        11 ~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~~~~~~f~~~l   87 (125)
T 3ohu_A           11 ESTVHCTNILLGLNDQRKKDILCDVTLIV-ERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPEEVTARGFGPLL   87 (125)
T ss_dssp             ECSSHHHHHHHHHHHHHHHTCSCCEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCTTCCHHHHHHHH
T ss_pred             ecHHHHHHHHHHHHHHHhcCCccceEEEE-CCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCCCCCHHHHHHHH
Confidence            45678999999999999999999999999 57999999999999999999999998865  56799998 9999999999


Q ss_pred             HhHcCCchh----HHHHhhcccC
Q 039068          147 RFLYSSWYS----FVTKLLQLKT  165 (166)
Q Consensus       147 ~FlYTg~i~----~a~~LL~lah  165 (166)
                      +|+|||++.    ++..||.+|+
T Consensus        88 ~~iYtg~~~~~~~~v~~ll~~A~  110 (125)
T 3ohu_A           88 QFAYTAKLLLSRENIREVIRCAE  110 (125)
T ss_dssp             HHHTTSEEEECTTTHHHHHHHHH
T ss_pred             HhHcCCceEECHHHHHHHHHHHH
Confidence            999999986    7777777664

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=99.92  E-value=8.2e-26  Score=167.25  Aligned_cols=98  Identities=14%  Similarity=0.217  Sum_probs=89.8

Q ss_pred             CCCCCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEe-CCCCHHHHHH
Q 039068           66 FLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKI-PGVPHEAVYA  144 (166)
Q Consensus        66 ~~~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I-~gV~~~~l~~  144 (166)
                      ......|+..+++.|++||+++.+|||+|.+ +|++|+|||+|||++||||++||.+++.| ....|.| +++++++++.
T Consensus         6 ~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~~~~f~~   83 (127)
T 1r29_A            6 QIQFTRHASDVLLNLNRLRSRDILTDVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEINPEGFNI   83 (127)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHTTCSCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSCHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHhcCCCCCEEEEE-CCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCCHHHHHH
Confidence            3456789999999999999999999999999 57899999999999999999999999988 7788999 9999999999


Q ss_pred             HHHhHcCCchh----HHHHhhcccC
Q 039068          145 FVRFLYSSWYS----FVTKLLQLKT  165 (166)
Q Consensus       145 lL~FlYTg~i~----~a~~LL~lah  165 (166)
                      +|+|+|||++.    ++..||.+|+
T Consensus        84 ll~~~Ytg~~~~~~~~~~~ll~~A~  108 (127)
T 1r29_A           84 LLDFMYTSRLNLREGNIMAVMATAM  108 (127)
T ss_dssp             HHHHHHHSCCCCCTTTHHHHHHHHH
T ss_pred             HHHHHcCCCcCcCHHHHHHHHHHHH
Confidence            99999999986    7888887764

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=99.92  E-value=2e-25  Score=170.38  Aligned_cols=99  Identities=17%  Similarity=0.209  Sum_probs=85.8

Q ss_pred             CCCCCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCC--CccceEEeCCCCHHHHH
Q 039068           66 FLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVN--NDFIYIKIPGVPHEAVY  143 (166)
Q Consensus        66 ~~~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E--~~~~~I~I~gV~~~~l~  143 (166)
                      ......++..+++.|++||+++.+|||+|.+ +|+.|+|||+||||+||||++||.+++.+  +....|.|+++++++++
T Consensus        24 ~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~  102 (144)
T 2ppi_A           24 AVSDPQHAARLLRALSSFREESRFCDAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMR  102 (144)
T ss_dssp             CCCCTTHHHHHHHHHHHTTC--CCCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHH
T ss_pred             eecCcchHHHHHHHHHHHHhcCCCcceEEEE-CCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHH
Confidence            3457789999999999999999999999999 57899999999999999999999988765  56778999999999999


Q ss_pred             HHHHhHcCCchh----HHHHhhcccC
Q 039068          144 AFVRFLYSSWYS----FVTKLLQLKT  165 (166)
Q Consensus       144 ~lL~FlYTg~i~----~a~~LL~lah  165 (166)
                      .+|+|+|||++.    ++..||.+|+
T Consensus       103 ~lL~fiYtg~~~i~~~~v~~ll~~A~  128 (144)
T 2ppi_A          103 EILDYIFSGQIRLNEDTIQDVVQAAD  128 (144)
T ss_dssp             HHHHHHTTSCCCCCTTTHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence            999999999986    7888888764

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=99.92  E-value=8.7e-26  Score=166.36  Aligned_cols=92  Identities=13%  Similarity=0.084  Sum_probs=83.7

Q ss_pred             CCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHh
Q 039068           69 CSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRF  148 (166)
Q Consensus        69 ~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~F  148 (166)
                      +..|+..+++.|++||+++.+|||+|.+ +|++|+|||+|||++||||++||.+++    ...|.|+|+++++++.+|+|
T Consensus         4 ~~~h~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~~~~~~~f~~ll~~   78 (119)
T 3b84_A            4 FVQHSVRVLQELNKQREKGQYCDATLDV-GGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLPAGFAEIFGLLLDF   78 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEECGGGHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhcCCCcceEEEE-CCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeCCCCHHHHHHHHHH
Confidence            3468889999999999999999999999 578999999999999999999999865    46799999999999999999


Q ss_pred             HcCCchh----HHHHhhcccC
Q 039068          149 LYSSWYS----FVTKLLQLKT  165 (166)
Q Consensus       149 lYTg~i~----~a~~LL~lah  165 (166)
                      +|||+++    ++..||.+|+
T Consensus        79 iYtg~~~~~~~~v~~ll~~A~   99 (119)
T 3b84_A           79 FYTGHLALTSGNRDQVLLAAR   99 (119)
T ss_dssp             HHHSCCCCCTTTHHHHHHHHH
T ss_pred             HcCCCCccCHHHHHHHHHHHH
Confidence            9999986    7888888764

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=99.91  E-value=9.2e-25  Score=164.56  Aligned_cols=96  Identities=14%  Similarity=0.143  Sum_probs=86.3

Q ss_pred             CCCCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeC-CCCHHHHHHH
Q 039068           67 LHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIP-GVPHEAVYAF  145 (166)
Q Consensus        67 ~~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~-gV~~~~l~~l  145 (166)
                      ..+..|+..+++.|++||+++.+|||+|.+ +|++|+|||+||||+||||++||.+.+.|  ...|.++ ++++++++.+
T Consensus        14 ~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~v~~~~~~~l   90 (138)
T 2z8h_A           14 YESSVHSTNVLLSLNDQRKKDVLCDVTVLV-EGQRFRAHRSVLAACSSYFHSRIVGQTDA--ELTVTLPEEVTVKGFEPL   90 (138)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHTCSCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTCCCT--TEEEECCTTSCHHHHHHH
T ss_pred             ecCCchHHHHHHHHHHHHhhCCCcCeEEEE-CCEEEechHHHHHHcCHHHHHHHhcCCCC--CceEEeCCCCCHHHHHHH
Confidence            456789999999999999999999999999 57899999999999999999999998865  3578995 9999999999


Q ss_pred             HHhHcCCchh----HHHHhhcccC
Q 039068          146 VRFLYSSWYS----FVTKLLQLKT  165 (166)
Q Consensus       146 L~FlYTg~i~----~a~~LL~lah  165 (166)
                      |+|+|||++.    ++..||.+|+
T Consensus        91 L~~~Ytg~~~i~~~~v~~ll~~A~  114 (138)
T 2z8h_A           91 IQFAYTAKLILSKDNVDEVCRCVE  114 (138)
T ss_dssp             HHHHHHSCCCCCTTTHHHHHHHHH
T ss_pred             HHHhcCCCcccCHHHHHHHHHHHH
Confidence            9999999986    7888887764

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=99.91  E-value=3.6e-25  Score=164.07  Aligned_cols=95  Identities=14%  Similarity=0.130  Sum_probs=83.6

Q ss_pred             CCCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEe-CCCCHHHHHHHH
Q 039068           68 HCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKI-PGVPHEAVYAFV  146 (166)
Q Consensus        68 ~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I-~gV~~~~l~~lL  146 (166)
                      .+..|+..+++.|++||+++.+|||+|.+ +|++|+|||+||||+||||++||.+++.|.  ..|.+ .++++++++.+|
T Consensus         8 ~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~~v~~~~f~~lL   84 (124)
T 2ihc_A            8 ESSVHSTNVLLSLNDQRKKDVLCDVTIFV-EGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPEEVTVKGFEPLI   84 (124)
T ss_dssp             ECSSHHHHHHHHHHHHHHHTCSCCEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCTTSCHHHHHHHH
T ss_pred             cCcchHHHHHHHHHHHHhcCCCcCEEEEE-CCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecCCcCHHHHHHHH
Confidence            45678999999999999999999999999 578999999999999999999999988653  57899 599999999999


Q ss_pred             HhHcCCchh----HHHHhhcccC
Q 039068          147 RFLYSSWYS----FVTKLLQLKT  165 (166)
Q Consensus       147 ~FlYTg~i~----~a~~LL~lah  165 (166)
                      +|+|||++.    ++..||.+|+
T Consensus        85 ~~iYtg~~~i~~~~v~~ll~~A~  107 (124)
T 2ihc_A           85 QFAYTAKLILSKENVDEVCKCVE  107 (124)
T ss_dssp             HHHHHSEEEEETTTHHHHHHHHH
T ss_pred             HHhcCCCcccCHHHHHHHHHHHH
Confidence            999999986    7888887764

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=99.91  E-value=6.2e-25  Score=161.91  Aligned_cols=92  Identities=12%  Similarity=0.134  Sum_probs=83.6

Q ss_pred             CCCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHH
Q 039068           68 HCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVR  147 (166)
Q Consensus        68 ~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~  147 (166)
                      ..+.|+..+++.|++||+++.+|||+|.+ +|++|+|||+|||++||||++||.++     ...|.|+++++++++.+|+
T Consensus         7 ~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~   80 (121)
T 1buo_A            7 QNPSHPTGLLCKANQMRLAGTLCDVVIMV-DSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDFLSPKTFQQILE   80 (121)
T ss_dssp             CCTTHHHHHHHHHHHHHHHTTTCCEEEEE-SSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHH
T ss_pred             cCcchHHHHHHHHHHHHhcCCCCCEEEEE-CCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeCCCCHHHHHHHHH
Confidence            45678999999999999999999999999 57899999999999999999999863     4579999999999999999


Q ss_pred             hHcCCchh----HHHHhhcccC
Q 039068          148 FLYSSWYS----FVTKLLQLKT  165 (166)
Q Consensus       148 FlYTg~i~----~a~~LL~lah  165 (166)
                      |+|||++.    ++..+|.+|+
T Consensus        81 ~~Ytg~~~~~~~~~~~ll~~A~  102 (121)
T 1buo_A           81 YAYTATLQAKAEDLDDLLYAAE  102 (121)
T ss_dssp             HHHHSCCCCCGGGHHHHHHHHH
T ss_pred             hhcCCCcCCCHHHHHHHHHHHH
Confidence            99999986    7888887764

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.91  E-value=2.8e-25  Score=167.40  Aligned_cols=93  Identities=15%  Similarity=0.086  Sum_probs=80.5

Q ss_pred             CCCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHH
Q 039068           68 HCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVR  147 (166)
Q Consensus        68 ~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~  147 (166)
                      .+..|+..+++.|++||+++.+|||+|.+ +|++|+|||+|||++|+||++||..++    ...|.|+++++++|+.+|+
T Consensus         4 ~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~~~~~~f~~lL~   78 (135)
T 2yy9_A            4 GSSGHSVRVLQELNKQREKGQYCDATLDV-GGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPAGFAEIFGLLLD   78 (135)
T ss_dssp             ---CHHHHHHHHHHHHHHTTTTCCEEEEE-TTEEEEECHHHHHHHCHHHHHTCC--------CCEEECGGGHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhcCCCcceEEEE-CCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCCCCHHHHHHHHH
Confidence            45678999999999999999999999999 579999999999999999999999866    4579999999999999999


Q ss_pred             hHcCCchh----HHHHhhcccC
Q 039068          148 FLYSSWYS----FVTKLLQLKT  165 (166)
Q Consensus       148 FlYTg~i~----~a~~LL~lah  165 (166)
                      |+|||++.    ++..||.+|+
T Consensus        79 fiYtg~~~i~~~~v~~ll~~A~  100 (135)
T 2yy9_A           79 FFYTGHLALTSGNRDQVLLAAK  100 (135)
T ss_dssp             HHHHSCCCCCTTTHHHHHHHHH
T ss_pred             HHhCCCCCCCHHHHHHHHHHHH
Confidence            99999986    7888887764

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=99.91  E-value=7.3e-25  Score=159.89  Aligned_cols=90  Identities=16%  Similarity=0.165  Sum_probs=81.6

Q ss_pred             CchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeC--CCCHHHHHHHHHh
Q 039068           71 FVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIP--GVPHEAVYAFVRF  148 (166)
Q Consensus        71 ~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~--gV~~~~l~~lL~F  148 (166)
                      .|+..+++.|++||+++.+|||+|.+ +|++|+|||+|||++||||++||.++    ....|.|.  ++++++++.+|+|
T Consensus         4 ~h~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~   78 (116)
T 2vpk_A            4 HHCEHLLERLNKQREAGFLCDCTIVI-GEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEF   78 (116)
T ss_dssp             HHHHHHHHHHHHHHHHTCSCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCCCCcEEEEE-CCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHH
Confidence            47889999999999999999999999 57899999999999999999999886    35578888  9999999999999


Q ss_pred             HcCCchh----HHHHhhcccC
Q 039068          149 LYSSWYS----FVTKLLQLKT  165 (166)
Q Consensus       149 lYTg~i~----~a~~LL~lah  165 (166)
                      +|||++.    ++..+|.+|+
T Consensus        79 ~Yt~~~~~~~~~v~~ll~~A~   99 (116)
T 2vpk_A           79 IYTGTLNLDSWNVKEIHQAAD   99 (116)
T ss_dssp             HHHSCCCCCTTTHHHHHHHHH
T ss_pred             HcCCCcccCHHHHHHHHHHHH
Confidence            9999986    7888887764

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=99.90  E-value=2.7e-24  Score=158.51  Aligned_cols=91  Identities=14%  Similarity=0.164  Sum_probs=83.0

Q ss_pred             CCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHh
Q 039068           69 CSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRF  148 (166)
Q Consensus        69 ~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~F  148 (166)
                      ...++..+++.++++|+++.+|||+|.+ +|+.|+|||+|||++|+||++||.++     ...|.++++++++++.+|+|
T Consensus        11 ~~~~~~~l~~~l~~~~~~~~~~Dv~l~v-~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~~~~~~~f~~~l~~   84 (116)
T 3fkc_A           11 DIQYSGSLLNSLNEQRGHGLFCDVTVIV-EDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNY   84 (116)
T ss_dssp             CTTHHHHHHHHHHHHHHHTTTCCEEEEE-TTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCCceeEEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHh
Confidence            5678999999999999999999999999 57999999999999999999999875     46799999999999999999


Q ss_pred             HcCCch-h----HHHHhhcccC
Q 039068          149 LYSSWY-S----FVTKLLQLKT  165 (166)
Q Consensus       149 lYTg~i-~----~a~~LL~lah  165 (166)
                      +|||++ .    ++..||.+|+
T Consensus        85 ~Ytg~~~~~~~~~~~~ll~~A~  106 (116)
T 3fkc_A           85 IYSSKIVRVRSDLLDELIKSGQ  106 (116)
T ss_dssp             HTTSCCCSCCHHHHHHHHHHHH
T ss_pred             hcCCCcCCCCHHHHHHHHHHHH
Confidence            999998 4    7888887764

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=99.90  E-value=1.8e-24  Score=160.94  Aligned_cols=93  Identities=15%  Similarity=0.210  Sum_probs=84.0

Q ss_pred             CCCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeC-CCCHHHHHHHH
Q 039068           68 HCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIP-GVPHEAVYAFV  146 (166)
Q Consensus        68 ~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~-gV~~~~l~~lL  146 (166)
                      .+..++..+++.|++||+++.+|||+|.+ +|+.|+|||+|||++|+||++||.+.    ....|.|+ ++++++++.+|
T Consensus        12 ~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~~~~~~~f~~ll   86 (129)
T 3ga1_A           12 EIPNFGNSILECLNEQRLQGLYCDVSVVV-KGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPAAVQPQSFQQIL   86 (129)
T ss_dssp             ECTTHHHHHHHHHHHHHHTTCSCCEEEEE-TTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCTTCCHHHHHHHH
T ss_pred             ecCcHHHHHHHHHHHHHhcCCCcceEEEE-CCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECCCCCHHHHHHHH
Confidence            46678999999999999999999999999 57999999999999999999999886    55689996 99999999999


Q ss_pred             HhHcCCchh----HHHHhhcccC
Q 039068          147 RFLYSSWYS----FVTKLLQLKT  165 (166)
Q Consensus       147 ~FlYTg~i~----~a~~LL~lah  165 (166)
                      +|+|||+++    ++..||.+|+
T Consensus        87 ~~iYtg~~~i~~~~~~~ll~~A~  109 (129)
T 3ga1_A           87 SFCYTGRLSMNVGDQDLLMYTAG  109 (129)
T ss_dssp             HHHHHSEEECCTTTHHHHHHHHH
T ss_pred             HHHhCCccccCHHHHHHHHHHHH
Confidence            999999986    7777777664

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=99.90  E-value=3e-24  Score=160.14  Aligned_cols=90  Identities=18%  Similarity=0.257  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCch
Q 039068           75 ETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWY  154 (166)
Q Consensus        75 ~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~i  154 (166)
                      .+.+.+++||+++.+|||+|.+ +|+.|+|||.||+++|+||++||.+++.|+....|.|+++++++++.+|+|+|||++
T Consensus        11 ~l~~~l~~l~~~~~~~Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~   89 (145)
T 4eoz_A           11 RLADELGGLWENSRFTDCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA   89 (145)
T ss_dssp             CHHHHHHHHHHHTCSCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHhCCCCcceEEEE-CCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCcc
Confidence            3788999999999999999999 578999999999999999999999998888888999999999999999999999998


Q ss_pred             h----HHHHhhcccC
Q 039068          155 S----FVTKLLQLKT  165 (166)
Q Consensus       155 ~----~a~~LL~lah  165 (166)
                      +    ++..+|.+|+
T Consensus        90 ~~~~~~~~~ll~~A~  104 (145)
T 4eoz_A           90 PNLDKMADDLLAAAD  104 (145)
T ss_dssp             TTGGGTHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHH
Confidence            6    7777777764

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=99.90  E-value=1.2e-24  Score=156.21  Aligned_cols=82  Identities=23%  Similarity=0.308  Sum_probs=70.2

Q ss_pred             HHhhCCCccEEEEcCCC---eeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCchh----
Q 039068           83 LFKEGNGADVYAVTEDK---SCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYS----  155 (166)
Q Consensus        83 Lr~e~~l~DV~I~v~~G---~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~i~----  155 (166)
                      ||+++.+|||+|.+++|   +.|+|||+|||++||||++||.++++|+. ..|.|+++++++++.+|+|+|||++.    
T Consensus         2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~   80 (109)
T 2vkp_A            2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEAD   80 (109)
T ss_dssp             CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTT
T ss_pred             cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHH
Confidence            68899999999999754   89999999999999999999999998877 89999999999999999999999986    


Q ss_pred             HHHHhhcccC
Q 039068          156 FVTKLLQLKT  165 (166)
Q Consensus       156 ~a~~LL~lah  165 (166)
                      ++..+|.+|+
T Consensus        81 ~~~~ll~~A~   90 (109)
T 2vkp_A           81 TVLATLYAAK   90 (109)
T ss_dssp             THHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7888887775

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=99.89  E-value=1.4e-24  Score=159.81  Aligned_cols=90  Identities=14%  Similarity=0.144  Sum_probs=81.0

Q ss_pred             CCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhH
Q 039068           70 SFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFL  149 (166)
Q Consensus        70 ~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~Fl  149 (166)
                      ..|+..+++.|++||+++.+|||+|.+ +|+.|+|||+|||++||||++||.+.     ...|.++++++++++.+|+|+
T Consensus         8 ~~h~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~   81 (119)
T 2q81_A            8 PQHSQHVLEQLNQQRQLGLLCDCTFVV-DGVHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHLDISNAAGLGQVLEFM   81 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHC-----CSGGGGGGCCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCCCcceEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHHH
Confidence            467889999999999999999999999 57899999999999999999999873     346788999999999999999


Q ss_pred             cCCchh----HHHHhhcccC
Q 039068          150 YSSWYS----FVTKLLQLKT  165 (166)
Q Consensus       150 YTg~i~----~a~~LL~lah  165 (166)
                      |||++.    ++..||.+|+
T Consensus        82 Ytg~~~i~~~~~~~ll~~A~  101 (119)
T 2q81_A           82 YTAKLSLSPENVDDVLAVAT  101 (119)
T ss_dssp             HHSCCCCCTTTHHHHHHHHH
T ss_pred             cCCCCccCHHHHHHHHHHHH
Confidence            999986    7888887764

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=99.89  E-value=4.6e-24  Score=176.34  Aligned_cols=98  Identities=17%  Similarity=0.196  Sum_probs=82.0

Q ss_pred             CCCCchHHHHHHHHHHHhhCCCccEEEEcC--CCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeC------CCCH
Q 039068           68 HCSFVPKETKDVWDKLFKEGNGADVYAVTE--DKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIP------GVPH  139 (166)
Q Consensus        68 ~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~--~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~------gV~~  139 (166)
                      ....|+..+++.|++||++|.+|||+|+++  +|++|+|||+|||++||||++||+++++|+....|.|+      ++++
T Consensus        11 ~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~   90 (279)
T 3i3n_A           11 ECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEP   90 (279)
T ss_dssp             ECTTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCH
T ss_pred             CCHhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCH
Confidence            457899999999999999999999999995  38899999999999999999999999999989999998      9999


Q ss_pred             HHHHHHHHhHcCCchh----HHHHhhcccC
Q 039068          140 EAVYAFVRFLYSSWYS----FVTKLLQLKT  165 (166)
Q Consensus       140 ~~l~~lL~FlYTg~i~----~a~~LL~lah  165 (166)
                      ++++.+|+|+|||++.    ++..||.+|+
T Consensus        91 ~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~  120 (279)
T 3i3n_A           91 DTVEAVIEYMYTGRIRVSTGSVHEVLELAD  120 (279)
T ss_dssp             HHHHHHHHHHHHSEEEEETTTHHHHHHHHH
T ss_pred             HHHHHHHHhhCcCCcccCHHHHHHHHHHHH
Confidence            9999999999999987    7777777764

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=99.89  E-value=1.6e-23  Score=160.23  Aligned_cols=90  Identities=18%  Similarity=0.257  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCch
Q 039068           75 ETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWY  154 (166)
Q Consensus        75 ~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~i  154 (166)
                      .+.+.|++||+++.+|||+|.+ +|+.|+|||.||+++|+||++||.++++|+....|.|+++++++++.+|+|+|||++
T Consensus        20 ~l~~~l~~l~~~~~~~Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~   98 (172)
T 3htm_A           20 RLADELGGLWENSRFTDCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA   98 (172)
T ss_dssp             CHHHHHHHHHHHTCSCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHhCCCCcceEEEE-CCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCC
Confidence            4788999999999999999999 578999999999999999999999999988889999999999999999999999998


Q ss_pred             h----HHHHhhcccC
Q 039068          155 S----FVTKLLQLKT  165 (166)
Q Consensus       155 ~----~a~~LL~lah  165 (166)
                      .    ++..+|.+|+
T Consensus        99 ~~~~~~~~~ll~~A~  113 (172)
T 3htm_A           99 PNLDKMADDLLAAAD  113 (172)
T ss_dssp             TTGGGTHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHH
Confidence            6    7777777764

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=99.88  E-value=1.2e-23  Score=171.54  Aligned_cols=97  Identities=18%  Similarity=0.220  Sum_probs=79.1

Q ss_pred             CCCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCC--CCccceEEeCCCCHHHHHHH
Q 039068           68 HCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKV--NNDFIYIKIPGVPHEAVYAF  145 (166)
Q Consensus        68 ~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~--E~~~~~I~I~gV~~~~l~~l  145 (166)
                      ....|+..+++.|++||+++.+|||+|.+ +|++|+|||+|||++||||++||++++.  |+....|.|+|+++++|+.+
T Consensus        10 ~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~l   88 (256)
T 3hve_A           10 SDPQHAARLLRALSSFREESRFCDAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREI   88 (256)
T ss_dssp             CCTTTHHHHHHHHHTCCC--CCCCEEEEE-TTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhcCCCcceEEEE-CCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHH
Confidence            35678999999999999999999999999 5799999999999999999999999876  56778999999999999999


Q ss_pred             HHhHcCCchh----HHHHhhcccC
Q 039068          146 VRFLYSSWYS----FVTKLLQLKT  165 (166)
Q Consensus       146 L~FlYTg~i~----~a~~LL~lah  165 (166)
                      |+|+|||+++    ++..+|.+|+
T Consensus        89 l~~~Yt~~~~i~~~~v~~ll~~A~  112 (256)
T 3hve_A           89 LDYIFSGQIRLNEDTIQDVVQAAD  112 (256)
T ss_dssp             HHHHHHSCCCCC-CCHHHHHHHHH
T ss_pred             HhhccCCCCcccHhHHHHHHHHHH
Confidence            9999999986    7777777664

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=99.87  E-value=4.4e-23  Score=153.58  Aligned_cols=82  Identities=15%  Similarity=0.113  Sum_probs=71.1

Q ss_pred             chHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcC
Q 039068           72 VPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYS  151 (166)
Q Consensus        72 ~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYT  151 (166)
                      ++..+++.|+  |.++.+|||+|.+ +|++|+|||+||||+|+||++         ....|.|+||++++|+.+|+|+||
T Consensus        15 ~~~~~l~~l~--r~~~~~~Dv~l~v-~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~~v~~~~f~~ll~fiYt   82 (119)
T 3m5b_A           15 GSDRLVQLAA--RLRPALCDTLITV-GSQEFPAHSLVLAGVSQQLGR---------RGQWALGEGISPSTFAQLLNFVYG   82 (119)
T ss_dssp             TTCHHHHHHH--HHTTTTCCEEEEE-TTEEEEECHHHHHTTCGGGCC---------CEEEECCSSCCHHHHHHHHHHHTT
T ss_pred             chHHHHHHHH--HhcCCCcceEEEE-CCEEEeeEHHHHHHcCHHHhc---------CCCEEEeCCCCHHHHHHHHHHHcC
Confidence            3456777776  6789999999999 579999999999999999985         345799999999999999999999


Q ss_pred             Cchh----HHHHhhcccC
Q 039068          152 SWYS----FVTKLLQLKT  165 (166)
Q Consensus       152 g~i~----~a~~LL~lah  165 (166)
                      |++.    ++..||.+|+
T Consensus        83 g~~~i~~~~v~~ll~aA~  100 (119)
T 3m5b_A           83 ESVELQPGELRPLQEAAR  100 (119)
T ss_dssp             CCEEECGGGHHHHHHHHH
T ss_pred             CCcCcCHHHHHHHHHHHH
Confidence            9987    7888887764

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.87  E-value=4.4e-22  Score=166.25  Aligned_cols=90  Identities=18%  Similarity=0.257  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCch
Q 039068           75 ETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWY  154 (166)
Q Consensus        75 ~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~i  154 (166)
                      .+.+.|++|++++.+|||+|.+ +|+.|+|||+||||+||||++||.+.++|+....|.|+++++++++.+|+|+|||++
T Consensus       160 ~l~~~l~~l~~~~~~~Dv~l~v-~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~  238 (312)
T 3hqi_A          160 RLADELGGLWENSRFTDCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA  238 (312)
T ss_dssp             CHHHHHHHHHHTTCSCCEEEEE-TTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred             hHHHHHHHHHhCCCCCceEEEE-CCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCC
Confidence            3788999999999999999999 578999999999999999999999999998889999999999999999999999988


Q ss_pred             h----HHHHhhcccC
Q 039068          155 S----FVTKLLQLKT  165 (166)
Q Consensus       155 ~----~a~~LL~lah  165 (166)
                      .    ++.+||.+|+
T Consensus       239 ~~~~~~~~~ll~~A~  253 (312)
T 3hqi_A          239 PNLDKMADDLLAAAD  253 (312)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHH
Confidence            6    7888888875

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=99.45  E-value=8.4e-14  Score=100.49  Aligned_cols=73  Identities=12%  Similarity=0.171  Sum_probs=57.7

Q ss_pred             EEEEcCCCeeehhhHHHHhhcCHHHHHhhcC--CCCCCccceEEeCCCCHHHHHHHHHhHc-----C---Cchh------
Q 039068           92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQ--SKVNNDFIYIKIPGVPHEAVYAFVRFLY-----S---SWYS------  155 (166)
Q Consensus        92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~--~~~E~~~~~I~I~gV~~~~l~~lL~FlY-----T---g~i~------  155 (166)
                      |+|+..||++|.+||.| |++|+||++||+.  .+.|+....|.|++|++.+|+.+|+|+|     +   +.++      
T Consensus         4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~   82 (97)
T 4ajy_C            4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP   82 (97)
T ss_dssp             EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred             EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence            67888899999999999 9999999999987  5667777899999999999999999999     5   4442      


Q ss_pred             -HHHHhhcccC
Q 039068          156 -FVTKLLQLKT  165 (166)
Q Consensus       156 -~a~~LL~lah  165 (166)
                       ++.+||.+|+
T Consensus        83 ~~l~eLl~AAn   93 (97)
T 4ajy_C           83 EIALELLMAAN   93 (97)
T ss_dssp             GGHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence             6777776653

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=98.74  E-value=4.9e-09  Score=80.19  Aligned_cols=57  Identities=12%  Similarity=0.158  Sum_probs=51.3

Q ss_pred             EEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCc
Q 039068           92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSW  153 (166)
Q Consensus        92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~  153 (166)
                      |+|...||++|.+||.| |.+|+||++||+...    ...|.|++|++.+|+.+|+|+|..+
T Consensus         4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl~~V~~~iL~kVieyc~~h~   60 (141)
T 1fs1_B            4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPLPNVNAAILKKVIQWCTHHK   60 (141)
T ss_dssp             EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEECTTCCHHHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC----CCceecCCcCHHHHHHHHHHHHHhc
Confidence            78888899999999999 899999999998632    3479999999999999999999876

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=98.64  E-value=6.2e-08  Score=70.31  Aligned_cols=61  Identities=16%  Similarity=0.160  Sum_probs=53.7

Q ss_pred             cEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCc
Q 039068           91 DVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSW  153 (166)
Q Consensus        91 DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~  153 (166)
                      -|+|...||++|.++|.+ |..|.++++||..++ +.....|.|++|++.+|+.+|+|+|..+
T Consensus         5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp~V~~~iL~kVieyc~~h~   65 (99)
T 1hv2_A            5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELKQFDSHILEKAVEYLNYNL   65 (99)
T ss_dssp             EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecCCcCHHHHHHHHHHHHHhc
Confidence            378888899999999997 899999999998855 5555689999999999999999999754

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=98.57  E-value=7.7e-08  Score=69.37  Aligned_cols=61  Identities=11%  Similarity=0.178  Sum_probs=50.0

Q ss_pred             EEEEcCCCeeehhhHHHHhhcCHHHHHhhcCC-C-CCCccceEEeCCCCHHHHHHHHHhHcCCc
Q 039068           92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQS-K-VNNDFIYIKIPGVPHEAVYAFVRFLYSSW  153 (166)
Q Consensus        92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~-~-~E~~~~~I~I~gV~~~~l~~lL~FlYTg~  153 (166)
                      |+|...||++|.++|.+ |..|.++++||... . .|.....|.+++|++.+|+.+|+|+|..+
T Consensus         3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~   65 (96)
T 2fnj_C            3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKV   65 (96)
T ss_dssp             EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHcc
Confidence            67888899999999997 89999999999863 3 45555789999999999999999998754

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=98.47  E-value=2.1e-08  Score=78.08  Aligned_cols=58  Identities=9%  Similarity=0.189  Sum_probs=28.9

Q ss_pred             EEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCc
Q 039068           92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSW  153 (166)
Q Consensus        92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~  153 (166)
                      |+|+..||+.|.+||.| |.+|+||++||....   ....|.|++|++.+|+.+|+|+|..+
T Consensus         6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~~V~~~iL~kVieyc~~h~   63 (160)
T 2p1m_A            6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLPNVTSKILAKVIEYCKRHV   63 (160)
T ss_dssp             --CCC---------CHH-HHTCTTTC---------------CCTTSCHHHHHHHHHC-----
T ss_pred             EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCCcCcHHHHHHHHHHHHHcc
Confidence            77887789999999999 899999999998753   23479999999999999999999986

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=97.92  E-value=1.3e-05  Score=59.36  Aligned_cols=62  Identities=11%  Similarity=0.135  Sum_probs=49.6

Q ss_pred             cEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCC--CCCCccceEEeCCCCHHHHHHHHHhHcCCc
Q 039068           91 DVYAVTEDKSCIPVHSSILSIASPVLGNILQQS--KVNNDFIYIKIPGVPHEAVYAFVRFLYSSW  153 (166)
Q Consensus        91 DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~--~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~  153 (166)
                      -|+|+..||.+|.++|.+ |..|..++.|+...  ..|.....|.|++|++.+|+.+|+|+|-.+
T Consensus        18 ~v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~   81 (112)
T 1vcb_B           18 YVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKV   81 (112)
T ss_dssp             EEEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhh
Confidence            478888899999999995 78999999999853  234444689999999999999999998643

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=97.75  E-value=3.8e-05  Score=60.37  Aligned_cols=63  Identities=19%  Similarity=0.254  Sum_probs=50.3

Q ss_pred             ccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCC----CccceEEeCCCCHHHHHHHHHhHcCCc
Q 039068           90 ADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVN----NDFIYIKIPGVPHEAVYAFVRFLYSSW  153 (166)
Q Consensus        90 ~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E----~~~~~I~I~gV~~~~l~~lL~FlYTg~  153 (166)
                      .-|+|+..||..|.+++.| |..|.+++.|+.....+    .....|.|++|++.+|+.+|+|+|-.+
T Consensus         7 ~~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~   73 (169)
T 3v7d_A            7 SNVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHR   73 (169)
T ss_dssp             CEEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTT
T ss_pred             CeEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcc
Confidence            3578988899999999998 78999999999864321    233679999999999999999998643

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=96.98  E-value=0.0011  Score=48.04  Aligned_cols=62  Identities=10%  Similarity=-0.035  Sum_probs=48.8

Q ss_pred             EEEEcCCCeeehhhHHHHhhcC-HHHHHhhcCCCC----CCccceEEeCCCCHHHHHHHHHhHcCCchh
Q 039068           92 VYAVTEDKSCIPVHSSILSIAS-PVLGNILQQSKV----NNDFIYIKIPGVPHEAVYAFVRFLYSSWYS  155 (166)
Q Consensus        92 V~I~v~~G~~i~AHr~VLAA~S-pYFraMF~~~~~----E~~~~~I~I~gV~~~~l~~lL~FlYTg~i~  155 (166)
                      |+|.| ||..|...+..|.... .+|.+||.....    ......+-| |-+++.++.||+|+.+|++.
T Consensus         8 v~LNV-GG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~   74 (107)
T 3drz_A            8 VRLNV-GGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLV   74 (107)
T ss_dssp             EEEEE-TTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCC
T ss_pred             EEEEE-CCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeC
Confidence            46888 6899999999998775 478999976421    123345655 89999999999999999874

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2

Probab=89.65  E-value=0.095  Score=38.61  Aligned_cols=62  Identities=6%  Similarity=-0.089  Sum_probs=45.8

Q ss_pred             EEEEcCCCeeehhhHHHHhhcCH-HHHHhhcCCCC-CCccceEEeCCCCHHHHHHHHHhHcCCchh
Q 039068           92 VYAVTEDKSCIPVHSSILSIASP-VLGNILQQSKV-NNDFIYIKIPGVPHEAVYAFVRFLYSSWYS  155 (166)
Q Consensus        92 V~I~v~~G~~i~AHr~VLAA~Sp-YFraMF~~~~~-E~~~~~I~I~gV~~~~l~~lL~FlYTg~i~  155 (166)
                      |+|.| ||..|..-+..|..... .|..||..... ......+-| |-++..++.||+|+-+|++.
T Consensus         7 V~LNV-GG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~   70 (115)
T 3kvt_A            7 VIINV-GGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLH   70 (115)
T ss_dssp             EEEEE-TTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBC
T ss_pred             EEEEE-CCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCC
Confidence            67889 68999999999986632 45667754221 123345555 78999999999999999874

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A

Probab=88.48  E-value=0.19  Score=40.87  Aligned_cols=67  Identities=9%  Similarity=-0.033  Sum_probs=49.5

Q ss_pred             CCCccE-EEEcCCCeeehhhHHHHhhcC-HHHHHhhcCCCC----CCccceEEeCCCCHHHHHHHHHhHcCCchh
Q 039068           87 GNGADV-YAVTEDKSCIPVHSSILSIAS-PVLGNILQQSKV----NNDFIYIKIPGVPHEAVYAFVRFLYSSWYS  155 (166)
Q Consensus        87 ~~l~DV-~I~v~~G~~i~AHr~VLAA~S-pYFraMF~~~~~----E~~~~~I~I~gV~~~~l~~lL~FlYTg~i~  155 (166)
                      |...++ +|.| ||..|..-+..|.... .+|..||.....    ......+-| |-++..|+.||+|+-+|++.
T Consensus         8 g~~~~~V~LNV-GG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~   80 (202)
T 3drx_A            8 GSVSKWVRLNV-GGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLV   80 (202)
T ss_dssp             SCCCCEEEEEE-TTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEEE-CCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccC
Confidence            344454 6788 6899999999998654 378999876421    112344555 78999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	166
d1r29a_	122	d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB	9e-05

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 9e-05
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 81  DKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHE 140
           ++L       DV  V   +     H ++L   S +  +I       N  +    P +  E
Sbjct: 17  NRLRSRDILTDVVIVVSREQ-FRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPE 75

Query: 141 AVYAFVRFLY 150
                + F+Y
Sbjct: 76  GFNILLDFMY 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	166
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	99.92
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	99.91
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	97.81
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	97.79
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	97.28
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	97.21
d3kvta_	103	akv3.1 voltage-gated potassium channel {California	95.08
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	94.47
d1t1da_	100	Shaker potassium channel {California sea hare (Apl	91.7

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.1e-26  Score=167.19  Aligned_cols=97  Identities=14%  Similarity=0.157  Sum_probs=88.2

Q ss_pred             CCCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHH
Q 039068           68 HCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVR  147 (166)
Q Consensus        68 ~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~  147 (166)
                      .+..|+..+++.|++||+++.+|||+|.+ +|++|+|||+|||++||||++||.+++.|+....+.+.++++++++.+|+
T Consensus         4 ~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v-~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~   82 (122)
T d1r29a_           4 QFTRHASDVLLNLNRLRSRDILTDVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLD   82 (122)
T ss_dssp             CCTTHHHHHHHHHHHHHHTTCSCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhcCCCeEEEEEE-CCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHHh
Confidence            45679999999999999999999999999 57899999999999999999999999988877778889999999999999


Q ss_pred             hHcCCchh----HHHHhhcccC
Q 039068          148 FLYSSWYS----FVTKLLQLKT  165 (166)
Q Consensus       148 FlYTg~i~----~a~~LL~lah  165 (166)
                      |+|||++.    ++..+|.+|+
T Consensus        83 ~~Ytg~~~i~~~~v~~ll~~A~  104 (122)
T d1r29a_          83 FMYTSRLNLREGNIMAVMATAM  104 (122)
T ss_dssp             HHHHSCCCCCTTTHHHHHHHHH
T ss_pred             hhcCCeecCchhhHHHHHHHHH
Confidence            99999986    7777777664

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.4e-25  Score=164.36  Aligned_cols=92  Identities=12%  Similarity=0.144  Sum_probs=82.4

Q ss_pred             CCCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHH
Q 039068           68 HCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVR  147 (166)
Q Consensus        68 ~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~  147 (166)
                      ....|+..+++.|++||++|.+|||+|.| +|++|+|||+|||++||||++||.+++     +.|.++++++++++.+|+
T Consensus         7 ~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v-~~~~~~aHk~vLaa~S~~F~~lf~~~~-----~~i~~~~v~~~~f~~ll~   80 (121)
T d1buoa_           7 QNPSHPTGLLCKANQMRLAGTLCDVVIMV-DSQEFHAHRTVLACTSKMFEILFHRNS-----QHYTLDFLSPKTFQQILE   80 (121)
T ss_dssp             CCTTHHHHHHHHHHHHHHHTTTCCEEEEE-SSCEEEECHHHHHHHCHHHHHHTTSCC-----SEEEECSSCHHHHHHHHH
T ss_pred             cCCchHHHHHHHHHHHHhcCCcEeEEEEE-CCEEEEEEHHHhcccChhhhhhccCcc-----ceeecCCCCHHHHHHHHH
Confidence            35679999999999999999999999999 468899999999999999999997643     469999999999999999


Q ss_pred             hHcCCchh----HHHHhhcccC
Q 039068          148 FLYSSWYS----FVTKLLQLKT  165 (166)
Q Consensus       148 FlYTg~i~----~a~~LL~lah  165 (166)
                      |+|||++.    ++..+|.+|+
T Consensus        81 ~~Ytg~i~l~~~~v~~ll~~A~  102 (121)
T d1buoa_          81 YAYTATLQAKAEDLDDLLYAAE  102 (121)
T ss_dssp             HHHHSCCCCCGGGHHHHHHHHH
T ss_pred             heEccccCCcHHHHHHHHHHHH
Confidence            99999986    7777777664

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=1.3e-05  Score=56.00  Aligned_cols=58  Identities=12%  Similarity=0.198  Sum_probs=44.9

Q ss_pred             EEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCC--CCCccceEEeCCCCHHHHHHHHHhHc
Q 039068           92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQSK--VNNDFIYIKIPGVPHEAVYAFVRFLY  150 (166)
Q Consensus        92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~--~E~~~~~I~I~gV~~~~l~~lL~FlY  150 (166)
                      |+|+..||.+|.+.+.+ |..|..+|.||....  .+.....|.|++|++++|+.+|+|++
T Consensus         3 i~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~~~e~~~~~IpL~nV~s~iL~kViey~~   62 (96)
T d2c9wc1           3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT   62 (96)
T ss_dssp             EEEECTTCCEEEEEHHH-HTTSHHHHHC------------CEEECTTCCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCEEEeeHHH-HHHhHHHHHHHhccCccccCCCCeeECCCCCHHHHHHHHHHHH
Confidence            67888899999999999 899999999997543  34456789999999999999999995

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.79  E-value=2.6e-05  Score=54.50  Aligned_cols=57  Identities=18%  Similarity=0.196  Sum_probs=50.0

Q ss_pred             EEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHc
Q 039068           92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLY  150 (166)
Q Consensus        92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlY  150 (166)
                      |+|+..||..|.+.+.+ |..|..++.|+.....+. ...|.+++|++.+|+.+|+|++
T Consensus         6 v~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~e~-~~~Ipl~~V~s~iL~kViey~~   62 (99)
T d1hv2a_           6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRES-KGRIELKQFDSHILEKAVEYLN   62 (99)
T ss_dssp             EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTC-TTEEEETTSCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCEEEeeHHH-HHHhHHHHHHHHccCCCC-cCccccCCCChHHHHHHHHHHH
Confidence            67888899999999999 779999999998765543 4579999999999999999996

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00017  Score=46.56  Aligned_cols=54  Identities=11%  Similarity=0.183  Sum_probs=46.9

Q ss_pred             EEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHc
Q 039068           92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLY  150 (166)
Q Consensus        92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlY  150 (166)
                      |+|...||.+|.+-+. .|..|...+.|+....    ...|.+++|++.+|+.+++|++
T Consensus         3 I~L~SsDg~~f~v~~~-~a~~S~tI~~ml~~~~----~~~Ipl~~V~s~iL~kVieyc~   56 (61)
T d1fs1b2           3 IKLQSSDGEIFEVDVE-IAKQSVTIKTMLEDLG----MDPVPLPNVNAAILKKVIQWCT   56 (61)
T ss_dssp             EEEECTTSCEEEEEGG-GGGTCHHHHHHHHHTC----CSSEECTTCCHHHHHHHHHHHH
T ss_pred             EEEEecCCCEEEecHH-HHHHhHHHHHHHhcCC----CCCcccCCcCHHHHHHHHHHHH
Confidence            6788889999999888 5689999999997632    3469999999999999999987

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=0.00027  Score=46.76  Aligned_cols=60  Identities=20%  Similarity=0.270  Sum_probs=45.7

Q ss_pred             cEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCC----CccceEEeCCCCHHHHHHHHHhHcC
Q 039068           91 DVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVN----NDFIYIKIPGVPHEAVYAFVRFLYS  151 (166)
Q Consensus        91 DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E----~~~~~I~I~gV~~~~l~~lL~FlYT  151 (166)
                      -|+|+..||.+|.+-+.+ |..|...+.|+.....+    .....|.+++|++.+|+.+|+|++-
T Consensus         2 ~I~L~SsDg~~F~v~~~~-a~~S~tIk~ml~~~~~~~~~~~~~~~Ipl~~V~s~iL~kVieyc~~   65 (72)
T d1nexa2           2 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEH   65 (72)
T ss_dssp             EEEEECTTSCEEEEEHHH-HTTSHHHHHTC-------------CEEECTTCCHHHHHHHHHHHHH
T ss_pred             eeEEEeCCCCEEEecHHH-HHHHHHHHHHHHhcCccccccCCCCcccCCCcCHHHHHHHHHHHHH
Confidence            378998899999998884 68999999999754322    2334799999999999999999863

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=95.08  E-value=0.0027  Score=44.26  Aligned_cols=62  Identities=6%  Similarity=-0.089  Sum_probs=46.6

Q ss_pred             EEEEcCCCeeehhhHHHHhhcCH-HHHHhhcCCCC-CCccceEEeCCCCHHHHHHHHHhHcCCchh
Q 039068           92 VYAVTEDKSCIPVHSSILSIASP-VLGNILQQSKV-NNDFIYIKIPGVPHEAVYAFVRFLYSSWYS  155 (166)
Q Consensus        92 V~I~v~~G~~i~AHr~VLAA~Sp-YFraMF~~~~~-E~~~~~I~I~gV~~~~l~~lL~FlYTg~i~  155 (166)
                      |+|.| ||..|...+..|..... +|..|+..... ......+-| |-+++.++.||+|+-+|++.
T Consensus         4 I~LNV-GG~~F~t~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylR~g~l~   67 (103)
T d3kvta_           4 VIINV-GGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLH   67 (103)
T ss_dssp             EEEEE-TTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBC
T ss_pred             EEEEE-CCEEEEEeHHHHhhCccchhHHHHcCCCccCCCCCcEEe-cCCHHHHHHHHHHHccCCcc
Confidence            67889 68999999999987544 55556654432 223345555 89999999999999999875

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.47  E-value=0.0045  Score=43.29  Aligned_cols=62  Identities=6%  Similarity=-0.023  Sum_probs=45.0

Q ss_pred             EEEEcCCCeeehhhHHHHhhcCHH-HHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCchh
Q 039068           92 VYAVTEDKSCIPVHSSILSIASPV-LGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYS  155 (166)
Q Consensus        92 V~I~v~~G~~i~AHr~VLAA~SpY-FraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~i~  155 (166)
                      |+|.| ||..|...+..|...... |..|+...........+-| |-++..|+.||+|+-+|++.
T Consensus         2 I~LNV-GG~~f~t~~~TL~~~p~s~l~~~~~~~~~~~~~~~~Fi-DRdp~~F~~IL~ylR~G~l~   64 (105)
T d1nn7a_           2 IVLNV-SGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLH   64 (105)
T ss_dssp             EEEEE-TTEEEEECHHHHHTSCSSSTTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBC
T ss_pred             EEEEE-CCEEEEEeHHHHhcCCCCCccccccccCcCCCCCcEEE-eCCHHHHHHHHHHHhcCccc
Confidence            68899 689999999999865443 3444433332233445544 68999999999999999874

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=91.70  E-value=0.02  Score=39.61  Aligned_cols=60  Identities=13%  Similarity=0.007  Sum_probs=46.0

Q ss_pred             EEEEcCCCeeehhhHHHHhhc-CHHHHHhhcCCCC-CCccceEEeCCCCHHHHHHHHHhHcCCc
Q 039068           92 VYAVTEDKSCIPVHSSILSIA-SPVLGNILQQSKV-NNDFIYIKIPGVPHEAVYAFVRFLYSSW  153 (166)
Q Consensus        92 V~I~v~~G~~i~AHr~VLAA~-SpYFraMF~~~~~-E~~~~~I~I~gV~~~~l~~lL~FlYTg~  153 (166)
                      |+|.| ||+.|.+-+..|..- +.+|.+|+..... ......+-| +-+++.++.||+|+-|+.
T Consensus         3 I~LNV-GG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~IL~flR~~~   64 (100)
T d1t1da_           3 VVINV-SGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGG   64 (100)
T ss_dssp             EEEEE-TTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTS
T ss_pred             EEEEE-CCEEEEEeHHHHhhCCCchhHHHHhCCCcCCCCCCeEEE-ecCHHHHHHHHHHHhcCC
Confidence            67899 689999999999874 5577777764432 233446666 779999999999998853