Citrus Sinensis ID: 039118

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MASKGSKSKAIRLPINLMFFILLASIPSSAAEQTACSGNFMELEECVDVFRALSRQRTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESEIPPDFQCINVPSHGSM
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHcHHcHHHHHHHHHHHHHHHHHcEEEcccccEEHHHHHHHcccccccccEEccccccccc
Coil and Loop (DISEMBL)
maskgskskairLPINLMFFILLAsipssaaeqtacsgnfmeLEECVDVFRALsrqrtpsknfcCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWnyceseippdfqcinvpshgsm
Flexible Loop (DISEMBL)
maskgskskaiRLPINLMFFILLASIPSSAAEQTACSGNFMELEECVDVFRALSRQRTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESEIPPDFQCINVPSHGSM
Low Complexity Region (SEG)
MASKGSKSKAIRLPINLMFFILLASIPSSAAEQTACSGNFMELEECVDVFRALSRQRTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESEIPPDFQCINVPSHGSM
Disordered region (IsUnstruct)
**********IRLPINLMFFILLASIPSSAAEQTACSGNFMELEECVDVFRALSRQRTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESEIPPDFQCIN*******
Disordered Region (DISOPRED)
******K**AIRLPINLMFFILLA**************NFMELEECVDVFRALSRQRTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESEIPPDFQCINV*S****
Disordered Region (DISEMBL)
********KAIRLPINLMFFILLASIPSSAAEQTACSGNFMELEECVDVFRALSRQRTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESEIPPDFQCINVPSHGSM
Disordered Region (DISPRO)
*****SKSKAIRLPINLMFFILLASIPSSAAEQTACSGNFMELEECVDVFRALSRQRTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESEIPPDFQCINV******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASKGSKSKAIRLPINLMFFILLASIPSSAAEQTACSGNFMELEECVDVFRALSRQRTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESEIPPDFQCINVPSHGSM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
Q8RW93	128	Putative lipid-binding pr	no	no	0.710	0.710	0.351	3e-05
P14009	137	14 kDa proline-rich prote	N/A	no	0.906	0.846	0.287	5e-05

>sp|Q8RW93|LBP65_ARATH Putative lipid-binding protein At4g00165 OS=Arabidopsis thaliana GN=At4g00165 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 27  PSSAAEQTACSGNFMELEECVDVFRALSRQ-RTPSKNFCCSLIGNMVQLEAMGTCLCTAL 85
           P +    T C  + ++   C      +S    TP    CCSLI  +   EA   CLCTAL
Sbjct: 37  PPAKQATTKCPRDTLKFGVCGSWLGLVSEVIGTPPSQECCSLIKGLADFEA-AVCLCTAL 95

Query: 86  EDIVLDVIKREIPSASLCLLWNYCESEIPPDFQC 119
           +  +L V   +IP A L LL N C   +P  F C
Sbjct: 96  KTSILGVAPVKIPVA-LTLLLNSCGKNVPQGFVC 128

Arabidopsis thaliana (taxid: 3702)

>sp|P14009|14KD_DAUCA 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 23/139 (16%)

Query: 1   MASKGSKSKAIRLPINLMFFILLASIPS------------------SAAEQTACSGNFME 42
           M SK S S A+   +N++FF L++S                            C  + ++
Sbjct: 1   MGSKNSASVALFFTLNILFFALVSSTEKCPDPYKPKPKPTPKPTPTPYPSAGKCPRDALK 60

Query: 43  LEECVDVFRALSRQ--RTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSA 100
           L  C DV   +      +P    CCSL+  +V LEA   CLCTA++  +L      +P A
Sbjct: 61  LGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEA-AVCLCTAIKANILGK-NLNLPIA 118

Query: 101 SLCLLWNYCESEIPPDFQC 119
            L L+ N C  ++P  F+C
Sbjct: 119 -LSLVLNNCGKQVPNGFEC 136

May be connected with the initiation of embryogenesis or with the metabolic changes produced by the removal of auxins.

Daucus carota (taxid: 4039)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
255585177	137	14 kDa proline-rich protein DC2.15 precu	0.906	0.846	0.345	2e-09
224137832	132	predicted protein [Populus trichocarpa]	0.906	0.878	0.365	3e-08
13661062	114	LEDI-2 protein [Lithospermum erythrorhiz	0.851	0.956	0.406	3e-08
225427023	132	PREDICTED: 14 kDa proline-rich protein D	0.656	0.636	0.415	1e-07
297741175	113	unnamed protein product [Vitis vinifera]	0.679	0.769	0.402	2e-07
89112750	113	dark inducible protein 2 [Arnebia euchro	0.843	0.955	0.406	2e-07
18413820	129	bifunctional inhibitor/lipid-transfer pr	0.906	0.899	0.351	4e-07
225427031	132	PREDICTED: 14 kDa proline-rich protein D	0.906	0.878	0.343	5e-07
255585179	136	14 kDa proline-rich protein DC2.15 precu	0.710	0.669	0.397	7e-07
388497944	132	unknown [Lotus japonicus]	0.875	0.848	0.355	2e-06

>gi|255585177|ref|XP_002533292.1| 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis] gi|223526876|gb|EEF29086.1| 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 69/139 (49%), Gaps = 23/139 (16%)

Query: 1   MASKGSKSKAIRLPINLMFFILLASI------------------PSSAAEQTACSGNFME 42
           MAS+   S A  L INL+FF L++S                   P  +++   C  + ++
Sbjct: 1   MASRTLASTAFLLSINLLFFTLVSSTYCPPSAPKGHAPHPIKPSPVPSSKPAKCPRDTLK 60

Query: 43  LEECVDVFRAL--SRQRTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSA 100
           L  CVD+ + L      TP K  CCSLI ++V LEA   CLCT ++  +L  I   +P  
Sbjct: 61  LGVCVDLLKDLLSVTVGTPPKTPCCSLIADLVDLEA-AVCLCTTIKASLLG-INLSVP-V 117

Query: 101 SLCLLWNYCESEIPPDFQC 119
            L LL NYC  ++P  F+C
Sbjct: 118 DLSLLLNYCGKKVPEGFKC 136

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137832|ref|XP_002326451.1| predicted protein [Populus trichocarpa] gi|222833773|gb|EEE72250.1| predicted protein [Populus trichocarpa]

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 67/134 (50%), Gaps = 18/134 (13%)

Query: 1   MASKGSKSKAIRLPINLMFFILLASIPSSAAEQTA-------------CSGNFMELEECV 47
           MASK + S A+ L +NL+FF L+ +  SS                   C  + ++L  C 
Sbjct: 1   MASKSTTSLALFLAVNLLFFSLVTAKRSSCPPPPKPKPTPTPSPSGGKCPKDALKLGVCA 60

Query: 48  DVFRALSRQR--TPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLL 105
           D+  +L      TP    CCSLI  ++ LEA   CLCTA++  +L  I   IP  SL LL
Sbjct: 61  DLLGSLLNVTVGTPPVEPCCSLIQGLLDLEA-AVCLCTAIKANILG-INLNIP-VSLSLL 117

Query: 106 WNYCESEIPPDFQC 119
            N C  ++P DFQC
Sbjct: 118 LNVCGKKVPKDFQC 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13661062|dbj|BAB41107.1| LEDI-2 protein [Lithospermum erythrorhizon]

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 70/123 (56%), Gaps = 14/123 (11%)

Query: 1   MASKGSKSKAIRLPINLMFFILLASIPSSAAEQTACSGNFMELEECVDVFRA--LSRQRT 58
           MAS+   S AI L +NL+FF L+     +A   T C  + ++L  C +V     L+  R 
Sbjct: 1   MASR--NSIAILLALNLIFFNLV-----TAQNITTCPVDTLQLGVCANVLGLIDLNLGRV 53

Query: 59  PSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYC--ESEIPPD 116
           P++  CCSL+GN+V LE +G CLCTAL+  +L++I   IP  SL LL N C     IP  
Sbjct: 54  PTQP-CCSLLGNLVALE-VGACLCTALDLNLLNLIHLTIP-ISLSLLVNTCNINGTIPSG 110

Query: 117 FQC 119
           + C
Sbjct: 111 WSC 113

Source: Lithospermum erythrorhizon

Species: Lithospermum erythrorhizon

Genus: Lithospermum

Family: Boraginaceae

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427023|ref|XP_002271461.1| PREDICTED: 14 kDa proline-rich protein DC2.15 isoform 1 [Vitis vinifera]

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 5/89 (5%)

Query: 33  QTACSGNFMELEECVDVFRALSRQ--RTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVL 90
           +  C  + ++L  C D+   L      TP K+ CCSLIG +  LEA   CLCTA++  VL
Sbjct: 46  KAVCPKDTLKLGVCADLLNDLLHAVVGTPPKSPCCSLIGGLADLEA-AVCLCTAIKANVL 104

Query: 91  DVIKREIPSASLCLLWNYCESEIPPDFQC 119
             IK  +P  SL LL NYC  ++P  +QC
Sbjct: 105 G-IKLNVP-VSLSLLLNYCGKKVPTGYQC 131

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741175|emb|CBI31906.3| unnamed protein product [Vitis vinifera]

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 30  AAEQTACSGNFMELEECVDVFRALSRQ--RTPSKNFCCSLIGNMVQLEAMGTCLCTALED 87
           ++    C  + ++L  C D+   L      TP K+ CCSLIG +  LEA   CLCTA++ 
Sbjct: 24  SSTSAVCPKDTLKLGVCADLLNDLLHAVVGTPPKSPCCSLIGGLADLEA-AVCLCTAIKA 82

Query: 88  IVLDVIKREIPSASLCLLWNYCESEIPPDFQC 119
            VL  IK  +P  SL LL NYC  ++P  +QC
Sbjct: 83  NVLG-IKLNVP-VSLSLLLNYCGKKVPTGYQC 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89112750|gb|ABD61003.1| dark inducible protein 2 [Arnebia euchroma]

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 70/123 (56%), Gaps = 15/123 (12%)

Query: 1   MASKGSKSKAIRLPINLMFFILLASIPSSAAEQTACSGNFMELEECVDVFRA--LSRQRT 58
           MAS+   + AI L +NL+FF L+     +A   T C  + ++L  C +V     L+  R 
Sbjct: 1   MASR--NAIAILLALNLIFFNLV-----TAQNVTTCPIDTLQLGVCANVLGLIDLNLGRV 53

Query: 59  PSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYC--ESEIPPD 116
           P++  CCSL+GN+V LE +G CLCTAL D +L++I   IP  SL LL N C     IP  
Sbjct: 54  PTQP-CCSLLGNLVALE-VGACLCTAL-DHLLNLIHLNIP-ISLSLLVNTCNINGTIPSG 109

Query: 117 FQC 119
           + C
Sbjct: 110 WTC 112

Source: Arnebia euchroma

Species: Arnebia euchroma

Genus: Arnebia

Family: Boraginaceae

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18413820|ref|NP_567391.1| bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein [Arabidopsis thaliana] gi|18413823|ref|NP_567392.1| bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein [Arabidopsis thaliana] gi|4725950|emb|CAB41721.1| pEARLI 1-like protein [Arabidopsis thaliana] gi|4725951|emb|CAB41722.1| pEARLI 1-like protein [Arabidopsis thaliana] gi|7267953|emb|CAB78294.1| pEARLI 1-like protein [Arabidopsis thaliana] gi|7267954|emb|CAB78295.1| pEARLI 1-like protein [Arabidopsis thaliana] gi|27765002|gb|AAO23622.1| At4g12520 [Arabidopsis thaliana] gi|110743045|dbj|BAE99415.1| pEARLI 1-like protein [Arabidopsis thaliana] gi|332657741|gb|AEE83141.1| bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein [Arabidopsis thaliana] gi|332657742|gb|AEE83142.1| bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein [Arabidopsis thaliana]

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 64/131 (48%), Gaps = 15/131 (11%)

Query: 1   MASKGSKSKAIRLPINLMFFILLASIPSSAAEQT----------ACSGNFMELEECVDVF 50
           MASK S S  I L  N++FF L  +     +             +C  + ++L  C +V 
Sbjct: 1   MASKISASLVIFLTFNILFFTLTTACGGGCSSTPKPKPKPKSTGSCPKDTLKLGVCANVL 60

Query: 51  RALSRQR--TPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNY 108
           + L + +  TP    CCSL+  +V LEA   CLCTAL+  VL  I   +P  SL LL N 
Sbjct: 61  KDLLKIQLGTPPVKPCCSLLNGLVDLEA-AACLCTALKAKVLG-INLNVP-VSLSLLLNV 117

Query: 109 CESEIPPDFQC 119
           C  ++P  F C
Sbjct: 118 CGKKVPSGFVC 128

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427031|ref|XP_002271593.1| PREDICTED: 14 kDa proline-rich protein DC2.15 [Vitis vinifera] gi|147854118|emb|CAN80709.1| hypothetical protein VITISV_033376 [Vitis vinifera] gi|297741172|emb|CBI31903.3| unnamed protein product [Vitis vinifera]

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 18/134 (13%)

Query: 1   MASKGSKSKAIRLPINLMFFILLAS-------------IPSSAAEQTACSGNFMELEECV 47
           M SKGS S A+ L INL+FF L+++                S     +C  + ++L  C 
Sbjct: 1   MDSKGSSSAALFLSINLLFFALVSANKPCSPPKPTPTPSTPSTPSNGSCPRDALKLGVCA 60

Query: 48  DVFRAL--SRQRTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLL 105
            +      +   TP    CCSL+  ++ LE +  CLCTA++  +L  I  +IP  SL LL
Sbjct: 61  KLLNGTVGAVVGTPPVTPCCSLLEGLLDLE-VAACLCTAIKANILG-IHLDIP-VSLSLL 117

Query: 106 WNYCESEIPPDFQC 119
            N C  ++P DFQC
Sbjct: 118 VNICGKKLPKDFQC 131

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585179|ref|XP_002533293.1| 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis] gi|223526877|gb|EEF29087.1| 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 7/98 (7%)

Query: 24  ASIPSSAAEQTACSGNFMELEECVDVFRALSRQR--TPSKNFCCSLIGNMVQLEAMGTCL 81
           +S PSS  + T C  + ++L  CVD+ + L       P K+ CCSLIG++V LEA   CL
Sbjct: 43  SSYPSS--KPTKCPKDTLKLGVCVDLLKDLLSVTIGKPPKSPCCSLIGDLVDLEA-AVCL 99

Query: 82  CTALEDIVLDVIKREIPSASLCLLWNYCESEIPPDFQC 119
           CT ++  +L  I   +P   L LL NYC  ++P  F+C
Sbjct: 100 CTTIKASLLG-INLNVP-VDLSLLLNYCGKKVPEGFKC 135

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497944|gb|AFK37038.1| unknown [Lotus japonicus]

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 68/138 (49%), Gaps = 26/138 (18%)

Query: 1   MASKGSKSKAIRLPINLMFFILLAS---------------IPSS---AAEQTACSGNFME 42
           MASK     AI L +NL+FF  + S                PS+   + +Q +C  + ++
Sbjct: 1   MASKA----AILLALNLVFFFAVVSSTNVPCSPPTKGHKNTPSTKPPSTKQPSCPRDTIK 56

Query: 43  LEECVDVFRALSRQ-RTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSAS 101
           L  C DV   ++ Q   P K  CCSL+  +V LEA   CLCTAL+  VL  I   +P  +
Sbjct: 57  LGVCADVLGLINVQLGKPPKTPCCSLLEGLVDLEA-AVCLCTALKANVLG-INLNLP-IN 113

Query: 102 LCLLWNYCESEIPPDFQC 119
           L L+ NYC   +P  F C
Sbjct: 114 LSLILNYCGKGVPKGFVC 131

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
TAIR|locus:2135635	177	AT4G12500 [Arabidopsis thalian	0.703	0.508	0.378	2.1e-13
TAIR|locus:2135625	182	AT4G12490 [Arabidopsis thalian	0.703	0.494	0.368	2.6e-13
TAIR|locus:2135610	168	EARLI1 "EARLY ARABIDOPSIS ALUM	0.703	0.535	0.368	4.2e-13
TAIR|locus:2135595	161	AZI1 "azelaic acid induced 1"	0.687	0.546	0.368	8.6e-13
TAIR|locus:2203886	149	AT1G62510 [Arabidopsis thalian	0.703	0.604	0.368	1.4e-12
TAIR|locus:2135545	129	AT4G12510 [Arabidopsis thalian	0.906	0.899	0.366	1e-11
TAIR|locus:2135555	129	AT4G12520 [Arabidopsis thalian	0.906	0.899	0.366	1e-11
TAIR|locus:2127560	133	AT4G22460 [Arabidopsis thalian	0.695	0.669	0.382	1.6e-10
TAIR|locus:2135600	111	AIR1 "Auxin-Induced in Root cu	0.789	0.909	0.357	2.5e-10
TAIR|locus:2050901	134	AT2G45180 [Arabidopsis thalian	0.906	0.865	0.330	3.2e-10

TAIR|locus:2135635 AT4G12500 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
 Identities = 36/95 (37%), Positives = 46/95 (48%)

Query:    27 PSSAAEQTACSGNFMELEECVDVFRALSRQRT--PSKNFCCSLIGNMVQLEAMGTCLCTA 84
             P +      C  + + L  C +V   L   +   PS   CCSLI  +V L+A   CLCTA
Sbjct:    85 PRTPGSSGNCPIDALRLGVCANVLSGLLNVQLGQPSAQPCCSLIQGLVDLDA-AICLCTA 143

Query:    85 LEDIVLDVIKREIPSASLCLLWNYCESEIPPDFQC 119
             L   VL  I   +P  SL +L N C   +P DFQC
Sbjct:   144 LRANVLG-INLNVP-ISLSVLLNVCNRRLPSDFQC 176

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2135625 AT4G12490 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
 Identities = 35/95 (36%), Positives = 46/95 (48%)

Query:    27 PSSAAEQTACSGNFMELEECVDVFRALSRQRT--PSKNFCCSLIGNMVQLEAMGTCLCTA 84
             P +      C  + + L  C +V   L   +   PS   CCSLI  +V L+A   CLCTA
Sbjct:    90 PRTPGSSGNCPIDALRLGVCANVLSGLLNVQLGQPSPQPCCSLIQGLVDLDA-AVCLCTA 148

Query:    85 LEDIVLDVIKREIPSASLCLLWNYCESEIPPDFQC 119
             L   VL  I   +P  SL +L N C   +P +FQC
Sbjct:   149 LRANVLG-INLNVP-ISLSVLLNVCNRRLPSNFQC 181

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0050832 "defense response to fungus" evidence=IMP

TAIR|locus:2135610 EARLI1 "EARLY ARABIDOPSIS ALUMINUM INDUCED 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
 Identities = 35/95 (36%), Positives = 47/95 (49%)

Query:    27 PSSAAEQTACSGNFMELEECVDVFRALSRQRT--PSKNFCCSLIGNMVQLEAMGTCLCTA 84
             P +      C  + + L  C +V  +L   +   PS   CCSLI  +V L+A   CLCTA
Sbjct:    76 PRTPGSSGNCPIDALRLGVCANVLSSLLNIQLGQPSAQPCCSLIQGLVDLDA-AICLCTA 134

Query:    85 LEDIVLDVIKREIPSASLCLLWNYCESEIPPDFQC 119
             L   VL  I   +P  SL +L N C  ++P  FQC
Sbjct:   135 LRANVLG-INLNVP-ISLSVLLNVCNRKVPSGFQC 167

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0009409 "response to cold" evidence=RCA;IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2135595 AZI1 "azelaic acid induced 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
 Identities = 35/95 (36%), Positives = 50/95 (52%)

Query:    27 PSSAAEQTACSGNFMELEECVDVFRALSRQRT--PSKNFCCSLIGNMVQLEAMGTCLCTA 84
             P S+    +C  + ++L  C +V  +L   +   PS   CCSLI  +V ++A   CLCTA
Sbjct:    71 PGSSGN--SCPIDALKLGVCANVLSSLLNIQLGQPSSQQCCSLIQGLVDVDA-AICLCTA 127

Query:    85 LEDIVLDVIKREIPSASLCLLWNYCESEIPPDFQC 119
             L   VL  I   +P  SL +L N C  ++P  FQC
Sbjct:   128 LRANVLG-INLNVP-ISLSVLLNVCNRKLPSGFQC 160

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0009627 "systemic acquired resistance" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2203886 AT1G62510 [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
 Identities = 35/95 (36%), Positives = 46/95 (48%)

Query:    27 PSSAAEQTACSGNFMELEECVDVFRALSRQRT--PSKNFCCSLIGNMVQLEAMGTCLCTA 84
             PS +     C  + ++L  C +V   L       P    CC+LI  +  LEA   CLCTA
Sbjct:    58 PSPSPAIAKCPRDALKLGVCANVLNGLLNVTLGKPPVEPCCTLIQGLADLEA-AACLCTA 116

Query:    85 LEDIVLDVIKREIPSASLCLLWNYCESEIPPDFQC 119
             L+  +L  I   IP  SL LL N C  ++P  FQC
Sbjct:   117 LKANILG-INLNIP-LSLSLLLNVCSKKVPRGFQC 149

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2135545 AT4G12510 [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 48/131 (36%), Positives = 66/131 (50%)

Query:     1 MASKGSKSKAIRLPINLMFFILLASI---------PSSAAEQT-ACSGNFMELEECVDVF 50
             MASK S S  I L  N++FF L  +          P    + T +C  + ++L  C +V 
Sbjct:     1 MASKISASLVIFLTFNILFFTLTTACGGGCSSTPKPKPKPKSTGSCPKDTLKLGVCANVL 60

Query:    51 RALSRQR--TPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNY 108
             + L + +  TP    CCSL+  +V LEA   CLCTAL+  VL  I   +P  SL LL N 
Sbjct:    61 KDLLKIQLGTPPVKPCCSLLNGLVDLEA-AACLCTALKAKVLG-INLNVP-VSLSLLLNV 117

Query:   109 CESEIPPDFQC 119
             C  ++P  F C
Sbjct:   118 CGKKVPSGFVC 128

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2135555 AT4G12520 [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 48/131 (36%), Positives = 66/131 (50%)

Query:     1 MASKGSKSKAIRLPINLMFFILLASI---------PSSAAEQT-ACSGNFMELEECVDVF 50
             MASK S S  I L  N++FF L  +          P    + T +C  + ++L  C +V 
Sbjct:     1 MASKISASLVIFLTFNILFFTLTTACGGGCSSTPKPKPKPKSTGSCPKDTLKLGVCANVL 60

Query:    51 RALSRQR--TPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNY 108
             + L + +  TP    CCSL+  +V LEA   CLCTAL+  VL  I   +P  SL LL N 
Sbjct:    61 KDLLKIQLGTPPVKPCCSLLNGLVDLEA-AACLCTALKAKVLG-INLNVP-VSLSLLLNV 117

Query:   109 CESEIPPDFQC 119
             C  ++P  F C
Sbjct:   118 CGKKVPSGFVC 128

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2127560 AT4G22460 [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
 Identities = 36/94 (38%), Positives = 46/94 (48%)

Query:    27 PSSAAEQTACSGNFMELEECVDVFRALS--RQRTPSKNFCCSLIGNMVQLEAMGTCLCTA 84
             PS       C  + +++  CV+    L+     TP    CCSLI  +V LEA   CLCTA
Sbjct:    41 PSPTPTTGTCPKDALKVGVCVNALNLLNGLTPGTPPVTPCCSLIEGLVDLEA-AICLCTA 99

Query:    85 LEDIVLDVIKREIPSASLCLLWNYCESEIPPDFQ 118
             L+  VL  I   +P  +L LL N C  E   DFQ
Sbjct:   100 LKASVLG-INLTLP-INLSLLLNICNREASRDFQ 131

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2135600 AIR1 "Auxin-Induced in Root cultures 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 40/112 (35%), Positives = 57/112 (50%)

Query:    10 AIRLPINLMFFILLASIPSSAAEQTACSGNFMELEECVDVFRA--LSRQRTPSKNFCCSL 67
             A+ + +NL+FF       +SA   T C  N +E+  CV V     L+    P K  CCSL
Sbjct:     8 ALFVSLNLLFFTY-----TSATTGT-CPKNSIEIGTCVTVLNLVDLTLGNPPVKP-CCSL 60

Query:    68 IGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESEIPPDFQC 119
             I  +  LEA   CLCTA++  +L ++   +P  +L +L N C    P  FQC
Sbjct:    61 IQGLADLEA-AVCLCTAVKASILGIVNINLP-INLSVLLNVCSRNAPKSFQC 110

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0010102 "lateral root morphogenesis" evidence=IEP

GO:0009653 "anatomical structure morphogenesis" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0048869 "cellular developmental process" evidence=RCA

TAIR|locus:2050901 AT2G45180 [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 45/136 (33%), Positives = 65/136 (47%)

Query:     1 MASKGSKSKAIRLPINLMFFILLASI---------------PSSA-AEQTACSGNFMELE 44
             MASK     A+ + +NL+FF  + S                P  A A +  C  + ++L 
Sbjct:     1 MASKALAVTALLITLNLLFFTFVTSTKCPPTTPKPPKTPKSPKKAPAVKPTCPTDTLKLG 60

Query:    45 ECVDVFRALSRQ-RTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLC 103
              C D+   ++    +P K  CC+L+  +  LEA   CLCTAL+  VL  I   +P   L 
Sbjct:    61 VCADLLGLVNVVVGSPPKTPCCTLLQGLANLEA-AVCLCTALKANVLG-INLNVP-IDLT 117

Query:   104 LLWNYCESEIPPDFQC 119
             LL NYC  ++P  FQC
Sbjct:   118 LLLNYCGKKVPHGFQC 133

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0029004201 hypothetical protein (132 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	128
cd01958	85	cd01958, HPS_like, HPS_like: Hydrophobic Protein f	3e-08

>gnl|CDD|238924 cd01958, HPS_like, HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

 Score = 47.3 bits (113), Expect = 3e-08
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 36  CSGNFMELEECVDVFRALSRQR-TPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIK 94
           C  + ++L  C +V         TP+   CC LIG +  L+A   CLCTA++  +L +  
Sbjct: 4   CPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDA-AVCLCTAIKANILGISI 62

Query: 95  REIPSASLCLLWNYCESEIPPDFQC 119
             IP  +L LL N C   +PP F C
Sbjct: 63  -NIP-VALSLLLNSCGRNVPPGFTC 85

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset of cortical cells. Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	100.0
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	100.0
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	96.97
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	96.96
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	96.88
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	95.94
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	93.77
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	93.04
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	89.26
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	82.21

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=100.00  E-value=5e-37  Score=216.24  Aligned_cols=84  Identities=36%  Similarity=0.771  Sum_probs=82.3

Q ss_pred             CCCcccccchhhhhHHhhhhc-cCCCCCCcccccccccccccchhhhhhHhhhccccceeeeccchhhHHHHHHHcCCCC
Q 039118           35 ACSGNFMELEECVDVFRALSR-QRTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESEI  113 (128)
Q Consensus        35 ~CP~d~lkL~vCa~vL~l~~~-lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLG~I~~~ip~i~l~llln~CGk~~  113 (128)
                      +||+|++||++|+||||++++ +|.|+.++|||+|+||+|+|| |+|||||+|+|++|+|++++| +++++++|.|||++
T Consensus         1 ~CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~A-A~CLC~aika~vlg~i~~~ip-v~l~~lln~CGk~~   78 (85)
T PF14547_consen    1 TCPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDA-AVCLCTAIKANVLGLINVNIP-VALNLLLNACGKTV   78 (85)
T ss_pred             CCCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchH-HHHHHHHHhhhcccccccccc-cHHHHHHHHhCCcC
Confidence            699999999999999999999 999999999999999999999 999999999999998899999 99999999999999


Q ss_pred             CCCceec
Q 039118          114 PPDFQCI  120 (128)
Q Consensus       114 P~gf~C~  120 (128)
                      |+||+|+
T Consensus        79 p~gf~C~   85 (85)
T PF14547_consen   79 PSGFTCP   85 (85)
T ss_pred             cCCCcCC
Confidence            9999996

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=100.00  E-value=1.9e-37  Score=218.75  Aligned_cols=83  Identities=37%  Similarity=0.803  Sum_probs=81.3

Q ss_pred             CCCCcccccchhhhhHHhhhhc-cCCCCCCcccccccccccccchhhhhhHhhhccccceeeeccchhhHHHHHHHcCCC
Q 039118           34 TACSGNFMELEECVDVFRALSR-QRTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESE  112 (128)
Q Consensus        34 ~~CP~d~lkL~vCa~vL~l~~~-lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLG~I~~~ip~i~l~llln~CGk~  112 (128)
                      ++||+|++|||+|+||||++++ +|+++.++|||+|+||+|+|| |+|||||+|+|+|| |++|+| +++++++|+|||+
T Consensus         2 ~~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldA-A~CLCtaikan~lg-i~~~~p-v~l~llln~CGk~   78 (85)
T cd01958           2 PTCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDA-AVCLCTAIKANILG-ISINIP-VALSLLLNSCGRN   78 (85)
T ss_pred             CCCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhhe-eeeeeeeeeccccC-cccccC-hhHHHHHHHHcCc
Confidence            6899999999999999999988 999999999999999999999 99999999999999 999999 9999999999999


Q ss_pred             CCCCcee
Q 039118          113 IPPDFQC  119 (128)
Q Consensus       113 ~P~gf~C  119 (128)
                      +|+||+|
T Consensus        79 ~P~gf~C   85 (85)
T cd01958          79 VPPGFTC   85 (85)
T ss_pred             CCCCCcC
Confidence            9999998

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=96.97  E-value=0.00014  Score=49.36  Aligned_cols=57  Identities=25%  Similarity=0.506  Sum_probs=34.5

Q ss_pred             CCCCCCcccccccccccccchhhhhhHhhhccc-cceeeeccchhhHHHHHHHcCCCCCCCcee
Q 039118           57 RTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIV-LDVIKREIPSASLCLLWNYCESEIPPDFQC  119 (128)
Q Consensus        57 g~p~~~~CCsli~gL~dldA~avCLCtAikanv-LG~I~~~ip~i~l~llln~CGk~~P~gf~C  119 (128)
                      +.+|..+||.-++.+.+.|  ..|||..++... .+ +++|..  +...|...||...|+ ++|
T Consensus        39 ~~~Ps~~CC~~l~~~~~~~--~~ClC~~~~~~~~~~-~~in~~--~a~~Lp~~Cg~~~~~-~~C   96 (96)
T PF14368_consen   39 GPAPSAACCSALKSVVQAD--PPCLCQLLNSPGAPG-FGINVT--RALALPAACGVPVPP-SKC   96 (96)
T ss_dssp             -----HHHHHHHCC----H--CCHHHCCCC-CCHCH-HCCTCH--HHHHHHHHCTSS-S-----
T ss_pred             CCCCCHHHHHHHHHhccCC--CCCHHHhcCcccccc-CCcCHH--HHHHHHHHcCCCCCC-CCC
Confidence            5567889999999998754  599999999987 45 456765  566788999999998 887

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=96.96  E-value=0.00059  Score=43.50  Aligned_cols=76  Identities=25%  Similarity=0.495  Sum_probs=50.7

Q ss_pred             CCcccccchhhhhHHhhhhccCCCCCCcccccccccccccchhhhhhHhhhccccceeee---ccchhhHHHHHHHcCCC
Q 039118           36 CSGNFMELEECVDVFRALSRQRTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKR---EIPSASLCLLWNYCESE  112 (128)
Q Consensus        36 CP~d~lkL~vCa~vL~l~~~lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLG~I~~---~ip~i~l~llln~CGk~  112 (128)
                      |.....++..|.+.+.... -..++.++||..++++.   . ..|+|.+++....+ +..   ... .....|-+.||..
T Consensus         1 C~~~~~~~~~c~~~~~~~~-~~~~p~~~CC~~l~~~~---~-~~C~C~~~~~~~~~-~~~~~~~~~-~~a~~lp~~C~~~   73 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGS-PGAPPSQQCCSQLRGLN---S-AQCRCLALRAAVLG-ILEIPGVNA-QNAASLPSACGVP   73 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCC-CCCCCchHHHHHHHHhc---c-cCCcchhhhccccc-ccchhhhhH-HHHHhhHHhcCCC
Confidence            3444455666777652110 12356788999999998   4 68999999998776 322   123 4667788999999


Q ss_pred             CCCCcee
Q 039118          113 IPPDFQC  119 (128)
Q Consensus       113 ~P~gf~C  119 (128)
                      .|. +.|
T Consensus        74 ~~~-~~C   79 (79)
T smart00499       74 PPY-TDC   79 (79)
T ss_pred             CCC-CCC
Confidence            875 444

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=96.88  E-value=0.00061  Score=45.66  Aligned_cols=66  Identities=26%  Similarity=0.555  Sum_probs=48.2

Q ss_pred             ccccchhhhhHHhhhhccC-C---CCCCcccccccccccccchhhhhhHhhhccccceeeeccchhhHHHHHHHcCCCCC
Q 039118           39 NFMELEECVDVFRALSRQR-T---PSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESEIP  114 (128)
Q Consensus        39 d~lkL~vCa~vL~l~~~lg-~---p~~~~CCsli~gL~dldA~avCLCtAikanvLG~I~~~ip~i~l~llln~CGk~~P  114 (128)
                      |..+|..|...+     .| .   +|.+.||+-|+.+   |.  .|+|..++...+. + +|..  ....|-..||..+|
T Consensus         4 ~~~~L~~C~~yl-----~~~~~~~~Ps~~CC~~vk~~---~~--~C~C~~~~~~~~~-~-i~~~--~a~~Lp~~Cgv~~p   69 (73)
T cd04660           4 DLDLLAECQPYV-----TGPNPPPPPSRECCAALRRA---DL--PCLCRYKTSLVLQ-I-IDPD--KAVYLPAKCGLPLP   69 (73)
T ss_pred             CHHHHHHHHHHH-----cCCCCCCCCCHHHHHHHHcC---Cc--CCEeeccCCCccc-c-cCHH--HHHHHHHHcCCCCC
Confidence            334677788775     22 2   3667899999974   44  3999999887665 2 4554  56778999999999


Q ss_pred             CCcee
Q 039118          115 PDFQC  119 (128)
Q Consensus       115 ~gf~C  119 (128)
                      + ++|
T Consensus        70 ~-~~C   73 (73)
T cd04660          70 P-SSC   73 (73)
T ss_pred             C-CCC
Confidence            9 887

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=95.94  E-value=0.0027  Score=42.66  Aligned_cols=62  Identities=19%  Similarity=0.446  Sum_probs=46.1

Q ss_pred             ccchhhhhHHhhhhccCCCCCCcccccccccccccchhhhhhHhhhccccceeeeccchhhHHHHHHHcCCCCCC
Q 039118           41 MELEECVDVFRALSRQRTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESEIPP  115 (128)
Q Consensus        41 lkL~vCa~vL~l~~~lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLG~I~~~ip~i~l~llln~CGk~~P~  115 (128)
                      .+|..|.....    .|.+|..+||.-|..     + .-|||.-+|...++ .-+|.+ - -..|.+.||..+|.
T Consensus         4 ~~L~~C~~ai~----~~~~Ps~~CC~~Lk~-----~-~~CLC~y~~~p~l~-~~i~~~-~-A~~l~~~Cgv~~P~   65 (66)
T cd01959           4 TQLSPCLPAIL----GGSPPSAACCAKLKE-----Q-QSCLCQYAKNPSLK-QYVNSP-N-ARKVLAACGVPYPN   65 (66)
T ss_pred             hhcccCHHHHh----CCCCCCHHHHHHHhc-----C-CCCeeeeecCccHH-hhcCcH-H-HHHHHHHcCCCCCC
Confidence            46778887641    367889999999986     4 56999999887676 335555 3 45588899999863

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=93.77  E-value=0.0081  Score=40.56  Aligned_cols=66  Identities=23%  Similarity=0.487  Sum_probs=46.7

Q ss_pred             ccchhhhhHHhhhhccC--CCCCCcccccccccccccchhhhhhHhhhcccccee----------eeccchhhHHHHHHH
Q 039118           41 MELEECVDVFRALSRQR--TPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVI----------KREIPSASLCLLWNY  108 (128)
Q Consensus        41 lkL~vCa~vL~l~~~lg--~p~~~~CCsli~gL~dldA~avCLCtAikanvLG~I----------~~~ip~i~l~llln~  108 (128)
                      ..+..|...+     .|  .++.+.||.-|+++    - ..|.|.++|..+.+++          .++.  -....|-+.
T Consensus        13 ~~l~~c~~~~-----~~~~~~~~~~CC~~L~~l----~-~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~--~~a~~LP~~   80 (90)
T PF00234_consen   13 VRLSPCLPYL-----QGGCQQPSQQCCQQLRQL----D-PQCRCEAIRQMVRQVIQQQQQGGQEMQIMA--QRAQNLPSM   80 (90)
T ss_dssp             SHHHGGHHHH-----TTSSSHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHSHHCTSTCSHHHHHHH--HHHHHHHHH
T ss_pred             ccccccHHHH-----hcccccchHHHhHHHHHH----h-HHhhCHHHHHHHHhhhhhhhhhHHHHHHHH--HHHHHHHHH
Confidence            5566777765     22  23567899999999    3 7999999999887621          2333  356678899


Q ss_pred             cCCCCCCCcee
Q 039118          109 CESEIPPDFQC  119 (128)
Q Consensus       109 CGk~~P~gf~C  119 (128)
                      ||..+|. |.|
T Consensus        81 C~v~~~~-~~C   90 (90)
T PF00234_consen   81 CNVSPPY-TDC   90 (90)
T ss_dssp             TTSSSSS-S-G
T ss_pred             CCCCCCC-CCC
Confidence            9999887 555

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=93.04  E-value=0.051  Score=34.55  Aligned_cols=50  Identities=24%  Similarity=0.381  Sum_probs=33.4

Q ss_pred             CCCCCcccccccccccccchhhhhhHhhhccccceeeeccchhhHHHHHHHcC
Q 039118           58 TPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCE  110 (128)
Q Consensus        58 ~p~~~~CCsli~gL~dldA~avCLCtAikanvLG~I~~~ip~i~l~llln~CG  110 (128)
                      ..|.++||+-++.+.+.|.  .|||..+|..... ....+..-....|-+.||
T Consensus        13 ~~Ps~~CC~~l~~~~~~~~--~ClC~~~~~~~~~-~~~~~~~~~a~~LP~~Cg   62 (63)
T cd00010          13 TAPPSDCCSGLKSVVKSDP--KCLCAALNGPGAS-LLGLKNATRALALPAACG   62 (63)
T ss_pred             CCCChHHHHHHHHHHhcCh--hhHHHHHcCcccc-ccCcccHHHHHhchHhcC
Confidence            3577889999999988766  7999999986543 111111134555666676

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=89.26  E-value=0.26  Score=35.34  Aligned_cols=25  Identities=28%  Similarity=0.146  Sum_probs=14.1

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHhc
Q 039118            1 MASKGSKSKAIRLPINLMFFILLAS   25 (128)
Q Consensus         1 MAsk~~~s~Al~L~lnllff~~~sa   25 (128)
                      ||||+--.+++||++-||+++-+++
T Consensus         1 MaSK~~llL~l~LA~lLlisSevaa   25 (95)
T PF07172_consen    1 MASKAFLLLGLLLAALLLISSEVAA   25 (95)
T ss_pred             CchhHHHHHHHHHHHHHHHHhhhhh
Confidence            9988632244555555555555554

Some of them may be involved in resistance to environmental stress [].

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=82.21  E-value=0.64  Score=31.71  Aligned_cols=67  Identities=19%  Similarity=0.317  Sum_probs=42.0

Q ss_pred             ccchhhhhHHhhhhccCCCCCCcccccccccccc----cchhhhhhHhhhccccceee-eccchhhHHHHHHHcCCCCC
Q 039118           41 MELEECVDVFRALSRQRTPSKNFCCSLIGNMVQL----EAMGTCLCTALEDIVLDVIK-REIPSASLCLLWNYCESEIP  114 (128)
Q Consensus        41 lkL~vCa~vL~l~~~lg~p~~~~CCsli~gL~dl----dA~avCLCtAikanvLG~I~-~~ip~i~l~llln~CGk~~P  114 (128)
                      .+|.-|.+.+.-   -+..|..+||.-++.+.+.    +- ..|+|.-+|....+ +. +|..  .+..|=..||-..|
T Consensus         8 ~~l~~C~~y~~g---~~~~Ps~~CC~~v~~l~~~~~t~~~-~~~~C~C~~~~~~~-~~~i~~~--~a~~LP~~C~v~~~   79 (89)
T cd01960           8 SLLAPCLGYLTG---GGPAPSPACCSGVKSLNGLAKTTAD-RQAACNCLKSAAAG-ISGLNPG--RAAGLPGKCGVSIP   79 (89)
T ss_pred             hhHHhHHHHHhC---CCCCCChHHhhhhHHHhhccCCCCc-hhhhhhcccccccc-cCCCCHH--HHHhChHhcccCCC
Confidence            356677777621   1235678899999998654    12 24677767776655 33 3443  44556678998765

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	128
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1 Length = 80

 Score = 46.4 bits (110), Expect = 4e-08
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 10/78 (12%)

Query: 42  ELEECVDVFRALSRQRTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSAS 101
           +L  C+++          + + CC+LIG +  +EA   CLC  L  + +  +     + +
Sbjct: 10  DLSICLNILGGS----LGTVDDCCALIGGLGDIEA-IVCLCIQLRALGILNL-----NRN 59

Query: 102 LCLLWNYCESEIPPDFQC 119
           L L+ N C    P +  C
Sbjct: 60  LQLILNSCGRSYPSNATC 77

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 6e-05
 Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 32/109 (29%)

Query: 43  LEECVDV-FRALSRQRTPSKNFCCSLIGNM-------------VQLEAMGTCLCTALEDI 88
           L + +D   + L R+   +     S+I                V  + + T + ++L   
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN-- 364

Query: 89  VLD-----------VIKRE---IPSASLCLLWNYCESEIPPDF--QCIN 121
           VL+            +      IP+  L L+W             +   
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	99.96
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	95.62
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	95.37
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	94.22
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	93.07
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	92.03
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	91.87
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	89.24
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	88.06

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=99.96  E-value=1.4e-30  Score=181.15  Aligned_cols=75  Identities=29%  Similarity=0.682  Sum_probs=66.8

Q ss_pred             CCCCCcccccchhhhhHHhhhhccCCCCCCcccccccccccccchhhhhhHhhhccccceeeeccchhhHHHHHHHcCCC
Q 039118           33 QTACSGNFMELEECVDVFRALSRQRTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESE  112 (128)
Q Consensus        33 ~~~CP~d~lkL~vCa~vL~l~~~lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLG~I~~~ip~i~l~llln~CGk~  112 (128)
                      +++||    |||+|+||||.  .+|  +.++|||+|+||+|+|| |+|||||+|+  || | +|+| +++++|+|+|||+
T Consensus         5 ~~~CP----kLgvCanvL~g--~~~--~~~~CC~Ll~GL~dleA-AvCLCtaik~--Lg-i-lnlp-v~L~llln~Cgk~   70 (80)
T 1hyp_A            5 RPSCP----DLSICLNILGG--SLG--TVDDCCALIGGLGDIEA-IVCLCIQLRA--LG-I-LNLN-RNLQLILNSCGRS   70 (80)
T ss_dssp             -CCSC----CCGGGGGGGGT--CCT--THHHHHHHHHTSCHHHH-HHHHHHHHHH--HT-C-SCHH-HHHHHHHHHTTCS
T ss_pred             CCCCC----chhHHHHHhCc--CCC--CCCccchhhhCcchhhh-hhhhhhhccc--cc-e-eecC-hhHHHHHHHhCCc
Confidence            46899    89999999962  123  67899999999999999 9999999994  89 7 8999 9999999999999


Q ss_pred             CCCCceecC
Q 039118          113 IPPDFQCIN  121 (128)
Q Consensus       113 ~P~gf~C~~  121 (128)
                      +|+||+|+.
T Consensus        71 ~P~gF~C~~   79 (80)
T 1hyp_A           71 YPSNATCPR   79 (80)
T ss_dssp             SCCCCCCSC
T ss_pred             CcCCCCCCC
Confidence            999999974

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=95.62  E-value=0.0038  Score=40.55  Aligned_cols=61  Identities=16%  Similarity=0.339  Sum_probs=44.5

Q ss_pred             ccchhhhhHHhhhhccCCCCCCcccccccccccccchhhhhhHhhhccccceeeeccchhhHHHHHHHcCCCCC
Q 039118           41 MELEECVDVFRALSRQRTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESEIP  114 (128)
Q Consensus        41 lkL~vCa~vL~l~~~lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLG~I~~~ip~i~l~llln~CGk~~P  114 (128)
                      .+|..|...+.    -|.+|..+||+-+++     . ..|+|..+|...++ ..+|.+ . -..|...||..+|
T Consensus         5 ~~L~pC~~~v~----~~~~Ps~~CC~~lk~-----~-~~ClC~~~k~~~~~-~~in~~-~-A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            5 SQLAVCASAIL----SGAKPSGECCGNLRA-----Q-QGCFCQYAKDPTYG-QYIRSP-H-ARDTLTSCGLAVP   65 (67)
T ss_dssp             STTHHHHHHHT----TCCCCCHHHHHHHHH-----H-SSHHHHGGGCSTTH-HHHTCH-H-HHHHHHHHTSCCS
T ss_pred             hhcccCHHHHc----CCCCCCHHHHHhhCC-----C-CCCCCccccCcccc-cccCHH-H-HHHHHHHcCCCCC
Confidence            36778887751    245677889999985     4 67999999876665 445665 3 3457889999987

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=95.37  E-value=0.0067  Score=40.02  Aligned_cols=67  Identities=21%  Similarity=0.362  Sum_probs=47.3

Q ss_pred             CCCCcccccchhhhhHHhhhhccC---CCCCCcccccccccccccchhhhhhHhhh---ccccceeeeccchhhHHHHHH
Q 039118           34 TACSGNFMELEECVDVFRALSRQR---TPSKNFCCSLIGNMVQLEAMGTCLCTALE---DIVLDVIKREIPSASLCLLWN  107 (128)
Q Consensus        34 ~~CP~d~lkL~vCa~vL~l~~~lg---~p~~~~CCsli~gL~dldA~avCLCtAik---anvLG~I~~~ip~i~l~llln  107 (128)
                      ..|-.+..+|..|...+     .|   .+|...||+-+++ +  |  ..|||..++   +.-+|   +|.+ . ...|-.
T Consensus         3 ~~C~~~~~~L~pC~~yv-----~~~~~~~Ps~~CC~~lk~-~--~--~~ClC~~~~~~~~~~~g---in~~-~-A~~LP~   67 (77)
T 2rkn_A            3 DLCGMSQDELNECKPAV-----SKENPTSPSQPCCTALQH-A--D--FACLCGYKNSPWLGSFG---VDPE-L-ASALPK   67 (77)
T ss_dssp             CBTTBCHHHHHHHGGGG-----BSSSCCCCCHHHHHHHTT-C--C--HHHHHTTTTCHHHHHHT---BCHH-H-HHHHHH
T ss_pred             chHHhHHHhHhhCHHHH-----cCCCCCCCCHHHHHHHHh-c--C--cCCcCcccCCcchhhcC---cCHH-H-HHHHHH
Confidence            46777778888898886     33   4567789999998 2  2  379999888   33345   3444 3 344778


Q ss_pred             HcCCCCCC
Q 039118          108 YCESEIPP  115 (128)
Q Consensus       108 ~CGk~~P~  115 (128)
                      .||..+|.
T Consensus        68 ~Cgv~~p~   75 (77)
T 2rkn_A           68 QCGLANAP   75 (77)
T ss_dssp             HTTCSCCC
T ss_pred             HcCCCCCC
Confidence            99998874

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=94.22  E-value=0.0034  Score=41.03  Aligned_cols=61  Identities=18%  Similarity=0.353  Sum_probs=43.3

Q ss_pred             ccchhhhhHHhhhhccCCCCCCcccccccccccccchhhhhhHhhhccccceeeeccchhhHHHHHHHcCCCCC
Q 039118           41 MELEECVDVFRALSRQRTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESEIP  114 (128)
Q Consensus        41 lkL~vCa~vL~l~~~lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLG~I~~~ip~i~l~llln~CGk~~P  114 (128)
                      .+|..|...+.    -|.+|..+||+-+++     . ..|+|..+|...++ ..+|.+ .+. .|...||..+|
T Consensus         6 ~~L~pC~~~v~----~~~~Ps~~CC~~lk~-----~-~~ClC~~~k~~~~~-~~in~~-~A~-~Lp~~Cgv~~P   66 (69)
T 1l6h_A            6 GQLTVCTGAIA----GGARPTAACCSSLRA-----Q-QGCFCQFAKDPRYG-RYVNSP-NAR-KAVSSCGIALP   66 (69)
T ss_dssp             TTHHHHHHHHT----TCCSTTHHHHHHHHH-----H-HHHHHHHTTCSSHH-HHTTTT-TGG-GCCCCCSSCSC
T ss_pred             hhcccCHHHHc----CCCCCCHHHHHhhCC-----C-CCCCCccccCcccc-cccCHH-HHH-HHHHHcCCCCC
Confidence            36788888761    245677889999985     4 68999999876665 345555 333 36778999887

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=93.07  E-value=0.015  Score=39.65  Aligned_cols=73  Identities=22%  Similarity=0.360  Sum_probs=46.8

Q ss_pred             cccchhhhhHHhhhhccCCCCCCcccccccccc-------cccchhhhhhHhhhccccceeeeccchhhHHHHHHHcCCC
Q 039118           40 FMELEECVDVFRALSRQRTPSKNFCCSLIGNMV-------QLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESE  112 (128)
Q Consensus        40 ~lkL~vCa~vL~l~~~lg~p~~~~CCsli~gL~-------dldA~avCLCtAikanvLG~I~~~ip~i~l~llln~CGk~  112 (128)
                      ..+|.-|.+.+.-    |.+|..+||+-+++|.       |-++  .|+|...++.-++  .+|.+ . ...|-..||-.
T Consensus         8 ~~~L~pCl~y~~~----~~~p~~~CC~~lk~l~~~a~t~~d~~~--~ClC~~~~~~~~~--~in~~-~-A~~LP~~Cgv~   77 (92)
T 2alg_A            8 SSSLAPCIPYVRG----GGAVPPACCNGIRNVNNLARTTPDRQA--ACNCLKQLSASVP--GVNPN-N-AAALPGKCGVS   77 (92)
T ss_dssp             HHHHGGGHHHHHH----CSCCCHHHHHHHHHHHHHCCSHHHHHH--HHHHHHHHHHHST--TCCHH-H-HHHHHHHTTCC
T ss_pred             HHhccCcHHHHcC----CCCCCHHHHHHHHHHHhhhcccCCCCc--CCccccCcccccC--ccChH-H-HHHHHHHcCCC
Confidence            3466677776521    3345668999999987       3333  7999876665552  13444 3 34578899998


Q ss_pred             CC----CCceecCC
Q 039118          113 IP----PDFQCINV  122 (128)
Q Consensus       113 ~P----~gf~C~~~  122 (128)
                      +|    +.+.|..+
T Consensus        78 ~p~~is~~~dC~~v   91 (92)
T 2alg_A           78 IPYKISASTNCATV   91 (92)
T ss_dssp             CSSCSSTTSCGGGC
T ss_pred             CCCCCCCCCCCccC
Confidence            77    35566543

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=92.03  E-value=0.064  Score=36.43  Aligned_cols=80  Identities=16%  Similarity=0.353  Sum_probs=48.6

Q ss_pred             CCCcccccchhhhhHHhhhhccCCCCCCcccccccccccc-----cchhhhhhHhhhccccceeeeccchhhHHHHHHHc
Q 039118           35 ACSGNFMELEECVDVFRALSRQRTPSKNFCCSLIGNMVQL-----EAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYC  109 (128)
Q Consensus        35 ~CP~d~lkL~vCa~vL~l~~~lg~p~~~~CCsli~gL~dl-----dA~avCLCtAikanvLG~I~~~ip~i~l~llln~C  109 (128)
                      +|.....+|.-|.+.+.    -|.+|..+||+-+++|.+.     |--+.|+|..-.+.-++  .+|.. . ...|-..|
T Consensus         2 ~C~~v~~~L~pCl~yv~----~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~--~in~~-~-A~~LP~~C   73 (91)
T 1siy_A            2 TCGQVQGNLAQCIGFLQ----KGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR--GINPN-N-AEALPGKC   73 (91)
T ss_dssp             CTTTTHHHHHHHHHHHT----SCSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCS--SCCHH-H-HHHHHHHH
T ss_pred             CHHHHHHhccCcHHHHh----CCCCCcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccC--CcCHH-H-HHHHHHHc
Confidence            35555567888888761    1234677899999998643     21137999732222231  23444 3 34578899


Q ss_pred             CCCCC----CCceecCC
Q 039118          110 ESEIP----PDFQCINV  122 (128)
Q Consensus       110 Gk~~P----~gf~C~~~  122 (128)
                      |..+|    +.+.|..+
T Consensus        74 gv~~p~~is~~~dC~~v   90 (91)
T 1siy_A           74 GVNIPYKISTSTNCNSI   90 (91)
T ss_dssp             TCCCSSCSCTTSCSSTT
T ss_pred             CCCCCCCCCCCCCCccC
Confidence            99876    45666554

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=91.87  E-value=0.035  Score=38.30  Aligned_cols=76  Identities=17%  Similarity=0.349  Sum_probs=48.5

Q ss_pred             ccchhhhhHHhhhhcc-CCCCCCcccccccccccccc---hhhhhhHhhhccccceeeeccchhhHHHHHHHcCCCCC--
Q 039118           41 MELEECVDVFRALSRQ-RTPSKNFCCSLIGNMVQLEA---MGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESEIP--  114 (128)
Q Consensus        41 lkL~vCa~vL~l~~~l-g~p~~~~CCsli~gL~dldA---~avCLCtAikanvLG~I~~~ip~i~l~llln~CGk~~P--  114 (128)
                      ..|.-|.+.+     . |..|..+||+-+++|.+.--   -..|+|..+|...-++..+|..  ....|=..||-++|  
T Consensus         9 ~~L~pCl~Yv-----~g~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~--~a~~LP~~CgV~~p~~   81 (93)
T 2ljo_A            9 SDLSPCLTYL-----TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTN--NAAALPGKCGVNIPYK   81 (93)
T ss_dssp             HHHHHHHHHH-----TTSSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHH--HHHHHHHHHTCCCSSC
T ss_pred             HHHHhHHHHH-----cCCCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHH--HHHhhhHhcCCCCCCC
Confidence            3455566655     3 33466789999988865321   0258888888654331234443  33447789999998  


Q ss_pred             --CCceecCCC
Q 039118          115 --PDFQCINVP  123 (128)
Q Consensus       115 --~gf~C~~~~  123 (128)
                        +.+.|..++
T Consensus        82 Is~~~dC~~v~   92 (93)
T 2ljo_A           82 ISTTTNCNTVK   92 (93)
T ss_dssp             CSTTCCGGGCC
T ss_pred             CCCCCCCCCCC
Confidence              788898765

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=89.24  E-value=0.034  Score=37.80  Aligned_cols=67  Identities=12%  Similarity=0.218  Sum_probs=39.5

Q ss_pred             cccchhhhhHHhhhhccCCCCCCcccccccccccc-----cchhhhhhHhhhccccceeeeccchhhHHHHHHHcCCCCC
Q 039118           40 FMELEECVDVFRALSRQRTPSKNFCCSLIGNMVQL-----EAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESEIP  114 (128)
Q Consensus        40 ~lkL~vCa~vL~l~~~lg~p~~~~CCsli~gL~dl-----dA~avCLCtAikanvLG~I~~~ip~i~l~llln~CGk~~P  114 (128)
                      ..+|.-|.+.+.    -|.+|..+||.-+++|.+.     |--+.|+|..-.+.-++  .+|.. . ...|-..||-.+|
T Consensus         7 ~~~L~pCl~y~~----~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~--~in~~-~-A~~LP~~C~v~~p   78 (90)
T 1bwo_A            7 DSLVRPCLSYVQ----GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH--NLNED-N-ARSIPPKCGVNLP   78 (90)
T ss_dssp             HHHHGGGHHHHT----TCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCT--TCCHH-H-HHTHHHHHTCCCS
T ss_pred             HHhhcccHHHHc----CCCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccC--CcCHH-H-HHHHHHHcCCCCC
Confidence            345666776651    1234677899999998742     10147999533333331  23444 2 3447789999876

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=88.06  E-value=0.076  Score=36.20  Aligned_cols=79  Identities=18%  Similarity=0.361  Sum_probs=46.9

Q ss_pred             CCcccccchhhhhHHhhhhccCCCCCCcccccccccccc-----cchhhhhhHhhhcccc-ceeeeccchhhHHHHHHHc
Q 039118           36 CSGNFMELEECVDVFRALSRQRTPSKNFCCSLIGNMVQL-----EAMGTCLCTALEDIVL-DVIKREIPSASLCLLWNYC  109 (128)
Q Consensus        36 CP~d~lkL~vCa~vL~l~~~lg~p~~~~CCsli~gL~dl-----dA~avCLCtAikanvL-G~I~~~ip~i~l~llln~C  109 (128)
                      |.....+|.-|.+.+.-   -+.+|..+||+-+++|.+.     |--+.|+|....+.-+ |   +|.. .. ..|=..|
T Consensus         4 C~~v~~~L~pCl~y~~~---~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~---in~~-~A-~~LP~~C   75 (93)
T 1afh_A            4 CGQVASAIAPCISYARG---QGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSG---LNAG-NA-ASIPSKC   75 (93)
T ss_dssp             SHHHHHHHGGGHHHHTT---SCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTT---CCHH-HH-HHHHHHH
T ss_pred             hHHHHHhccCcHHHHcC---CCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccC---cCHH-HH-HHHHHHc
Confidence            44444567777777611   1233566899999999531     1013799975555444 4   3443 33 3477889


Q ss_pred             CCCCC----CCceecCC
Q 039118          110 ESEIP----PDFQCINV  122 (128)
Q Consensus       110 Gk~~P----~gf~C~~~  122 (128)
                      |-.+|    +.+.|..+
T Consensus        76 ~v~~p~~is~~~dC~~v   92 (93)
T 1afh_A           76 GVSIPYTISTSTDCSRV   92 (93)
T ss_dssp             HCCCSSCCSTTCCSSSC
T ss_pred             CCCCCCCCCCCCCCccC
Confidence            99876    45666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	128
d1hypa_	75	a.52.1.1 (A:) Soybean hydrophobic protein {Soybean	6e-09

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]} Length = 75

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

 Score = 47.0 bits (112), Expect = 6e-09
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 10/77 (12%)

Query: 43  LEECVDVFRALSRQRTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASL 102
           L  C+++          + + CC+LIG +  +EA   CLC  L  + +  + R +     
Sbjct: 6   LSICLNILGGS----LGTVDDCCALIGGLGDIEA-IVCLCIQLRALGILNLNRNLQ---- 56

Query: 103 CLLWNYCESEIPPDFQC 119
            L+ N C    P +  C
Sbjct: 57  -LILNSCGRSYPSNATC 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	99.96
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	93.12
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	93.09
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	92.51
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	84.57

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=99.96  E-value=5.7e-31  Score=179.52  Aligned_cols=74  Identities=28%  Similarity=0.669  Sum_probs=66.4

Q ss_pred             CCCCcccccchhhhhHHhhhhccCCCCCCcccccccccccccchhhhhhHhhhccccceeeeccchhhHHHHHHHcCCCC
Q 039118           34 TACSGNFMELEECVDVFRALSRQRTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESEI  113 (128)
Q Consensus        34 ~~CP~d~lkL~vCa~vL~l~~~lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLG~I~~~ip~i~l~llln~CGk~~  113 (128)
                      ++||    |||+|+||||+.    .++.++||++|+||+|+|| |+||||||||+  | + +|+| |++++|+|+|||++
T Consensus         1 PtCP----Klg~C~nvLg~~----~~~~~~CC~Ll~GL~dleA-AvCLCtaika~--~-l-lnvp-v~l~llln~Cgk~~   66 (75)
T d1hypa_           1 PSCP----DLSICLNILGGS----LGTVDDCCALIGGLGDIEA-IVCLCIQLRAL--G-I-LNLN-RNLQLILNSCGRSY   66 (75)
T ss_dssp             CCSC----CCGGGGGGGGTC----CTTHHHHHHHHHTSCHHHH-HHHHHHHHHHH--T-C-SCHH-HHHHHHHHHTTCSS
T ss_pred             CCCC----chhhHHHHhcCc----cCCCCCcchHHhhHHHHHH-HHHHHHHHHHh--h-h-cccc-chHHHHHHHcCCcC
Confidence            4899    899999999843    2467899999999999999 99999999995  4 3 7899 99999999999999


Q ss_pred             CCCceecC
Q 039118          114 PPDFQCIN  121 (128)
Q Consensus       114 P~gf~C~~  121 (128)
                      |+||+||.
T Consensus        67 P~gF~CP~   74 (75)
T d1hypa_          67 PSNATCPR   74 (75)
T ss_dssp             CCCCCCSC
T ss_pred             cCCCcCCC
Confidence            99999985

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=93.12  E-value=0.0048  Score=40.70  Aligned_cols=75  Identities=15%  Similarity=0.452  Sum_probs=49.8

Q ss_pred             ccchhhhhHHhhhhccCCCCCCccccccccccccc----chhhhhhHhhhccccceeeeccchhhHHHHHHHcCCCCC--
Q 039118           41 MELEECVDVFRALSRQRTPSKNFCCSLIGNMVQLE----AMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESEIP--  114 (128)
Q Consensus        41 lkL~vCa~vL~l~~~lg~p~~~~CCsli~gL~dld----A~avCLCtAikanvLG~I~~~ip~i~l~llln~CGk~~P--  114 (128)
                      .+|.-|.+.+.    -|..|.++||.-+++|.+.-    - ..|+|..+|...-+...+|..  +...|=..||-++|  
T Consensus         8 ~~l~pCl~Yl~----g~~~P~~~CC~gv~~L~~~a~t~~d-~~~lC~cl~~~~~~~~~in~~--ra~~LP~~C~v~~p~p   80 (91)
T d1mida_           8 SKMKPCLTYVQ----GGPGPSGECCNGVRDLHNQAQSSGD-RQTVCNCLKGIARGIHNLNLN--NAASIPSKCNVNVPYT   80 (91)
T ss_dssp             HHHGGGHHHHT----TCSCCCHHHHHHHHHHHHHCCSHHH-HHHHHHHHHHHHHTCTTCCHH--HHHHHHHHTTCCCCSC
T ss_pred             HHHHhhHHHHc----CCCCCCcchhhhHHHHHHHhcCCCc-HHHHHHhhhhhcccCCCcCHH--HHHhchHhcCCCCCCC
Confidence            35556666651    13356788999999997642    2 368998888754331224444  45567789999998  


Q ss_pred             --CCceecCC
Q 039118          115 --PDFQCINV  122 (128)
Q Consensus       115 --~gf~C~~~  122 (128)
                        +.+.|..+
T Consensus        81 is~~~dC~~i   90 (91)
T d1mida_          81 ISPDIDCSRI   90 (91)
T ss_dssp             CCTTCCGGGC
T ss_pred             CCCCCCCCCC
Confidence              78888765

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.09  E-value=0.0046  Score=40.85  Aligned_cols=81  Identities=19%  Similarity=0.356  Sum_probs=51.5

Q ss_pred             CCcccccchhhhhHHhhhhccCCCCCCcccccccccccc----cchhhhhhHhhhccccceeeeccchhhHHHHHHHcCC
Q 039118           36 CSGNFMELEECVDVFRALSRQRTPSKNFCCSLIGNMVQL----EAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCES  111 (128)
Q Consensus        36 CP~d~lkL~vCa~vL~l~~~lg~p~~~~CCsli~gL~dl----dA~avCLCtAikanvLG~I~~~ip~i~l~llln~CGk  111 (128)
                      |..-..+|.-|.+.+.  + -+..|.++||.-+++|.+.    +- ..|+|..+|...-+...+|..  .+..|=..||-
T Consensus         4 C~~v~~~l~pCl~Ylt--g-~~~~Ps~~CC~gv~~l~~~a~t~~d-r~~lC~cl~~~~~~~~~in~~--ra~~LP~~C~v   77 (93)
T d1fk5a_           4 CGQVASAIAPCISYAR--G-QGSGPSAGCCSGVRSLNNAARTTAD-RRAACNCLKNAAAGVSGLNAG--NAASIPSKCGV   77 (93)
T ss_dssp             HHHHHHHHGGGHHHHT--T-CSSSCCHHHHHHHHHHHHHCCSHHH-HHHHHHHHHHHHHTCTTCCHH--HHHHHHHHTTC
T ss_pred             HHHHHHHhhhhHHHHh--C-CCCCCCCchhHHHHHHHHHccCCcc-HHHHHHhhhhcccccCCcCHH--HHHhhhHhcCC
Confidence            4333446677777761  0 1233677899999999864    22 368888888765331123443  45567789999


Q ss_pred             CCC----CCceecCC
Q 039118          112 EIP----PDFQCINV  122 (128)
Q Consensus       112 ~~P----~gf~C~~~  122 (128)
                      ++|    +.+.|..+
T Consensus        78 ~l~~pis~~~dCs~i   92 (93)
T d1fk5a_          78 SIPYTISTSTDCSRV   92 (93)
T ss_dssp             CCSSCCSTTCCGGGC
T ss_pred             CCCCCCCCCCCCCcC
Confidence            887    67888665

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=92.51  E-value=0.034  Score=35.48  Aligned_cols=64  Identities=17%  Similarity=0.336  Sum_probs=49.4

Q ss_pred             ccccchhhhhHHhhhhccCCCCCCcccccccccccccchhhhhhHhhhccccceeeeccchhhHHHHHHHcCCCCCC
Q 039118           39 NFMELEECVDVFRALSRQRTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESEIPP  115 (128)
Q Consensus        39 d~lkL~vCa~vL~l~~~lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLG~I~~~ip~i~l~llln~CGk~~P~  115 (128)
                      |..+|..|+..+    .-|.+|+..||+-+..     = .-|||.-+|...+.   -.|.+.+-+-+++.||..+|.
T Consensus         3 ~p~~L~~C~~Ai----~~g~~PS~~CC~kLke-----Q-~~ClC~Y~kdP~~~---~yv~spnarkv~~aCgvp~P~   66 (67)
T d1tuka1           3 QASQLAVCASAI----LSGAKPSGECCGNLRA-----Q-QGCFCQYAKDPTYG---QYIRSPHARDTLTSCGLAVPH   66 (67)
T ss_dssp             CGGGGGGGHHHH----HHCCCCCHHHHHHHHH-----H-GGGHHHHTTCTTTH---HHHTSHHHHHHHHHTTCCCCC
T ss_pred             ChhhccccHHHH----hcCCCCcHHHHHHHHh-----c-CCccceecCCccHH---HHcCCHHHHHHHHhcCCCCCC
Confidence            456789998875    1477899999998753     3 56999999998876   244445778899999999874

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=84.57  E-value=0.037  Score=35.52  Aligned_cols=64  Identities=20%  Similarity=0.373  Sum_probs=48.3

Q ss_pred             ccccchhhhhHHhhhhccCCCCCCcccccccccccccchhhhhhHhhhccccceeeeccchhhHHHHHHHcCCCCCC
Q 039118           39 NFMELEECVDVFRALSRQRTPSKNFCCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESEIPP  115 (128)
Q Consensus        39 d~lkL~vCa~vL~l~~~lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLG~I~~~ip~i~l~llln~CGk~~P~  115 (128)
                      |..+|..|+..+    .-|.+|+..||+-+..     = .-|||.=+|...++   -.|.+.+-+-+++.||..+|.
T Consensus         4 ~p~~L~~C~~ai----~~g~~PS~~CC~kLke-----Q-~~ClC~Y~k~P~~~---~yv~spnarkv~~aCgvp~P~   67 (69)
T d1l6ha_           4 NAGQLTVCTGAI----AGGARPTAACCSSLRA-----Q-QGCFCQFAKDPRYG---RYVNSPNARKAVSSCGIALPT   67 (69)
T ss_dssp             TTTTHHHHHHHH----TTCCSTTHHHHHHHHH-----H-HHHHHHHTTCSSHH---HHTTTTTGGGCCCCCSSCSCC
T ss_pred             ChhhccccHHHH----hCCCCCcHHHHHHHHh-----c-CCccceeccCccHH---HHcCCHHHHHHHHhcCCCCCC
Confidence            345788998864    1467888999998764     3 57999999998876   244445678889999998874