Citrus Sinensis ID: 039123

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
MEKYFKRKPVMPPFLEKDENEIGEQASGETFTKNEFSNWKKPKRLQERIGGPNSAHNKAMGLTFCGHNEYDNSSNQGNYILTLRFLADHNEDIKRVTLKNAPRNNLLIALSIQKDLVRVCSIEITNVIIRDVGDALFSILIDESRDASTKEQMVVALRYADKNGYVFERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPLCKR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHccccHHHHHHHHHcccHHHHHHHHcccccccccccccccccHHHHHHHHHHHccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccEEEEEEEEcccccEEEccccEEcccccccHHHHHHHHHHHHHHccccccccccEEEcccccccccHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHHHccccHHHHHHHHHHHHcccccHHHHHHcccccHHHHHHHHHHHccHHHHHHHHccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccEEEEEEEEcccccEEEEEEEEEEcccccHHHHHHHHHHHHHHccccHHHcccccccccccccccHHHHHHHHHHHcccEEEEHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mekyfkrkpvmppflekdeneigeqasgetftknefsnwkkpkrlqeriggpnsahnkamgltfcghneydnssnqgnYILTLRFLADHNedikrvtlknaprnnLLIALSIQKDLVRVCSIEITNVIIRDVGDALFSILIDESRDASTKEQMVVALRYADKNGYVFERFIGFKHVTCTTTISLKEALDQLFSKYGLSisrlhrqgydgasnmqgeFNGLRTLIMNKNECAYYIHCFVHQLQLAIVAMAKKHDQINSFFNVIANVInvdgplckr
Flexible Loop (DISEMBL)
mekyfkrkpvmppflekdeneigeqasgetftknefsnwkkpkrlQERIGGPNSAHNKAMGLTFCGHNEYDNSSNQGNYILTLRFLADHNEDIKRvtlknaprnnLLIALSIQKDLVRVCSIEITNVIIRDVGDALFSILIdesrdastkEQMVVALRYADKNGYVFERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPLCKR
Low Complexity Region (SEG)
MEKYFKRKPVMPPFLEKDENEIGEQASGETFTKNEFSNWKKPKRLQERIGGPNSAHNKAMGLTFCGHNEYDNSSNQGNYILTLRFLADHNEDIKRVTLKNAPRNNLLIALSIQKDLVRVCSIEITNVIIRDVGDALFSILIDESRDASTKEQMVVALRYADKNGYVFERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPLCKR
Disordered region (IsUnstruct)
***********************************************************MGLTFCGHNEYDNSSNQGNYILTLRFLADHNEDIKRVTLKNAPRNNLLIALSIQKDLVRVCSIEITNVIIRDVGDALFSILIDESRDASTKEQMVVALRYADKNGYVFERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPL***
Disordered Region (DISOPRED)
***YFKRKPVMPPFLE**************FTKNEFSNWKKPKRLQERIGGPNSAHNKAMGLTFCGHNEYDNSSNQGNYILTLRFLADHNEDIKRVTLKNAPRNNLLIALSIQKDLVRVCSIEITNVIIRDVGDALFSILIDESRDASTKEQMVVALRYADKNGYVFERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPLCK*
Disordered Region (DISEMBL)
MEKYFKRKPVMPPFLEKDENEIGEQASGETFTKNEFSNWKKPKRLQERIGGPNSAHNKAMGLTFCGHNEYDNSSNQGNYILTLRFLADHNEDIKRVTLKNAPRNNLLIALSIQKDLVRVCSIEITNVIIRDVGDALFSILIDESRDASTKEQMVVALRYADKNGYVFERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPLCKR
Disordered Region (DISPRO)
MEKYFKRKPVMPPFLEKDENEIGEQASGETFTKNEFSNWKKPKRLQERIGGPNSAHNKAMGLTFCGHNEYDNSSNQGNYILTLRFLADHNEDIKRVTLKNAPRNNLLIALSIQKDLVRVCSIEITNVIIRDVGDALFSILIDESRDASTKEQMVVALRYADKNGYVFERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGP****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKYFKRKPVMPPFLEKDENEIGEQASGETFTKNEFSNWKKPKRLQERIGGPNSAHNKAMGLTFCGHNEYDNSSNQGNYILTLRFLADHNEDIKRVTLKNAPRNNLLIALSIQKDLVRVCSIEITNVIIRDVGDALFSILIDESRDASTKEQMVVALRYADKNGYVFERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPLCKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	275	2.2.26 [Sep-21-2011]
Q5SVZ6	1142	Zinc finger MYM-type prot	yes	no	0.727	0.175	0.264	4e-18
O43422	761	52 kDa repressor of the i	no	no	0.530	0.191	0.238	1e-06
Q9CUX1	758	52 kDa repressor of the i	no	no	0.530	0.192	0.231	1e-05
Q6R2W3	1325	SCAN domain-containing pr	no	no	0.465	0.096	0.295	2e-05

>sp|Q5SVZ6|ZMYM1_HUMAN Zinc finger MYM-type protein 1 OS=Homo sapiens GN=ZMYM1 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 106/208 (50%), Gaps = 8/208 (3%)

Query: 66  GHNEYDNSSNQGNYILTLRFLA-DHNEDIKRVTLKNAPRNNLLIALSIQKDLVRVCSIEI 124
           G+++  +S N+GN++  L   A D  E+  R+        N   +  IQ D++ +   E+
Sbjct: 573 GNDQSVSSVNKGNFLELLEMRAKDKGEETFRLMNSQVDFYN---STQIQSDIIEIIKTEM 629

Query: 125 TNVIIRDVGDA-LFSILIDESRDASTKEQMVVALRYADKNG---YVFERFIGFKHVTCTT 180
              I+ ++ D+  FSI+ DE+ +++ KEQ+ + +RY  K+     + ERF+GF      T
Sbjct: 630 LQDIVNEINDSSAFSIICDETINSAMKEQLSICVRYPQKSSKAILIKERFLGFVDTEEMT 689

Query: 181 TISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCFVHQ 240
              L   +     + G+ + ++H Q YD  +N++ +FN +      +   A YIHC+ H 
Sbjct: 690 GTHLHRTIKTYLQQIGVDMDKIHGQAYDSTTNLKIKFNKIAAEFKKEEPRALYIHCYAHF 749

Query: 241 LQLAIVAMAKKHDQINSFFNVIANVINV 268
           L L+I+   K+  ++ S    ++++ N 
Sbjct: 750 LDLSIIRFCKEVKELRSALKTLSSLFNT 777

Homo sapiens (taxid: 9606)

>sp|O43422|P52K_HUMAN 52 kDa repressor of the inhibitor of the protein kinase OS=Homo sapiens GN=PRKRIR PE=1 SV=2

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 1/147 (0%)

Query: 91  EDIKRVTLKNAPRNNLLIALSIQKDLVRVCSIEITNVIIRDVGDA-LFSILIDESRDAST 149
           E++ R   +    N L  + + Q+ ++ +C   I    +R+V D+  FSI+ D+  D + 
Sbjct: 213 EEVLRKRFETTAVNTLFCSKTQQRQMLEICESCIREETLREVRDSHFFSIITDDVVDIAG 272

Query: 150 KEQMVVALRYADKNGYVFERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDG 209
           +E + V +R+ D++  + E FIGF        I   +    +  K+GL++     Q Y  
Sbjct: 273 EEHLPVLVRFVDESHNLREEFIGFLPYEADAEILAVKFHTMITEKWGLNMEYCRGQAYIV 332

Query: 210 ASNMQGEFNGLRTLIMNKNECAYYIHC 236
           +S    +   + + ++ K   A Y  C
Sbjct: 333 SSGFSSKMKVVASRLLEKYPQAIYTLC 359

Upstream regulator of interferon-induced serine/threonine protein kinase R (PKR). May block the PKR-inhibitory function of P58IPK, resulting in restoration of kinase activity and suppression of cell growth.

Homo sapiens (taxid: 9606)

>sp|Q9CUX1|P52K_MOUSE 52 kDa repressor of the inhibitor of the protein kinase OS=Mus musculus GN=Prkrir PE=2 SV=2

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 1/147 (0%)

Query: 91  EDIKRVTLKNAPRNNLLIALSIQKDLVRVCSIEITNVIIRDVGDA-LFSILIDESRDAST 149
           E++ R   +    N L  + + Q+ ++ +C   I    +R+V D+  FSI+ D+  D + 
Sbjct: 209 EEVLRKRFEATAVNTLFCSKTQQRHMLEICESCIREETLREVRDSHFFSIITDDVVDIAG 268

Query: 150 KEQMVVALRYADKNGYVFERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDG 209
           +E + V +R+ D    + E F+GF        I   +    +  K+GL++     Q Y  
Sbjct: 269 EEHLPVLVRFVDDAHNLREEFVGFLPYEADAEILAVKFHTTITEKWGLNMEYCRGQAYIV 328

Query: 210 ASNMQGEFNGLRTLIMNKNECAYYIHC 236
           +S    +   + + ++ K   A Y  C
Sbjct: 329 SSGFSSKMKVVASRLLEKYPQAVYTLC 355

Upstream regulator of interferon-induced serine/threonine protein kinase R (PKR).

Mus musculus (taxid: 10090)

>sp|Q6R2W3|SCND3_HUMAN SCAN domain-containing protein 3 OS=Homo sapiens GN=SCAND3 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 4/132 (3%)

Query: 137  FSILIDESRDASTKEQMVVALRYADKNGYVFERFIGFKHVTCTTTISLKEAL-DQLFSKY 195
            FS+ +DE RD +    ++V +R+   +    E F      T TT+  L EA+ + + +K 
Sbjct: 899  FSLQLDECRDIANMIILLVYVRFEHDDDIKEEFFFSASLPTNTTSSELYEAVKNYIVNKC 958

Query: 196  GLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCFVHQLQLAIVAMAKKHDQI 255
            GL          DGA++M G+ + + T I          HCF+H+  L   AM K   ++
Sbjct: 959  GLEFKFCVGVCSDGAASMTGKHSEVVTQIKELAPECKTTHCFIHRESL---AMKKISAEL 1015

Query: 256  NSFFNVIANVIN 267
            NS  N I  ++N
Sbjct: 1016 NSVLNDIVKIVN 1027

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
224126313	788	predicted protein [Populus trichocarpa]	0.898	0.313	0.5	4e-74
357490617	892	Zinc finger MYM-type protein [Medicago t	0.927	0.285	0.468	2e-69
357439181	665	hypothetical protein MTR_1g040620 [Medic	0.923	0.381	0.463	3e-65
15221982	769	TTF-type zinc finger protein with HAT di	0.930	0.332	0.427	5e-64
8954063	811	Contains similarity to a transposable el	0.930	0.315	0.427	6e-64
15230069	505	General transcription factor 2-related z	0.807	0.439	0.522	4e-63
238479193	592	TTF-type zinc finger protein with HAT di	0.912	0.423	0.415	1e-58
238479195	564	TTF-type zinc finger protein with HAT di	0.912	0.445	0.415	1e-58
19225003	811	putative transposase [Oryza sativa Japon	0.890	0.302	0.406	2e-56
15233987	664	uncharacterized protein [Arabidopsis tha	0.858	0.355	0.436	4e-55

>gi|224126313|ref|XP_002319808.1| predicted protein [Populus trichocarpa] gi|222858184|gb|EEE95731.1| predicted protein [Populus trichocarpa]

 Score =  283 bits (725), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 146/292 (50%), Positives = 183/292 (62%), Gaps = 45/292 (15%)

Query: 29  ETFTKNEFSNWKKPKRLQERIGGPNSAHNKA----------------------------- 59
           ++F    FSNWKK +R    IG  NS HN A                             
Sbjct: 129 DSFVGEGFSNWKKKERFDLHIGKSNSCHNVARIKCENLMNEKQSIMTLLSEQTVKSQSDY 188

Query: 60  ----------------MGLTFCGHNEYDNSSNQGNYILTLRFLADHNEDIKRVTLKNAPR 103
                            GL F GH+E + SSNQGNY+  L FL+ +NE IKRVT   APR
Sbjct: 189 RTRLNASIECARFLLHQGLPFRGHDECECSSNQGNYLELLHFLSRNNEAIKRVTFSEAPR 248

Query: 104 NNLLIALSIQKDLVRVCSIEITNVIIRDVGDALFSILIDESRDASTKEQMVVALRYADKN 163
           +N L +  IQKD+ +  + EITNVII+D+GD+LFSILIDESRD S KEQM V LRY D N
Sbjct: 249 HNKLTSPDIQKDITQAAAEEITNVIIKDLGDSLFSILIDESRDISIKEQMAVVLRYVDNN 308

Query: 164 GYVFERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTL 223
           G++ ERF+G +HV  TT  SLK A++ LFSK+GLSISRL  QGYDGASNM+GEFNGL+ L
Sbjct: 309 GHIIERFLGIQHVRDTTASSLKAAIEALFSKHGLSISRLRGQGYDGASNMRGEFNGLKAL 368

Query: 224 IMNKNECAYYIHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPLCKR 275
           I+N N  AYY+HCF H+LQL +VA+ KKH+++   FN I+++IN+ G  CKR
Sbjct: 369 ILNSNPSAYYVHCFAHRLQLTLVAVTKKHNEVGDVFNFISSIINIVGASCKR 420

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357490617|ref|XP_003615596.1| Zinc finger MYM-type protein [Medicago truncatula] gi|355516931|gb|AES98554.1| Zinc finger MYM-type protein [Medicago truncatula]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 141/301 (46%), Positives = 186/301 (61%), Gaps = 46/301 (15%)

Query: 21  EIGEQASGETFTKNEFSNWKKPKRLQERIG-GPNSAHNKAM------------------- 60
           + G+QA G+TF    F++W K   L   +G GPNSAHN A                    
Sbjct: 223 DFGKQAGGDTFITEGFTSWNKKTTLSSHVGAGPNSAHNIAWKKCGDLMKQDQHIEGLMSK 282

Query: 61  --------------------------GLTFCGHNEYDNSSNQGNYILTLRFLADHNEDIK 94
                                     GL+F GH+E   SSNQGN++  LR+ A   + +K
Sbjct: 283 HSQTTRNLYRRRLTASLDCIRLLLKQGLSFRGHDEKIESSNQGNFLELLRWFAKRKKKVK 342

Query: 95  RVTLKNAPRNNLLIALSIQKDLVRVCSIEITNVIIRDVGDALFSILIDESRDASTKEQMV 154
           RV L+NAP N+ +   SIQK+ V   S+E T  II D+GD LF+IL+DESRD S KEQMV
Sbjct: 343 RVVLENAPENDKMTCPSIQKEFVSAISLETTKAIIEDLGDELFAILVDESRDVSDKEQMV 402

Query: 155 VALRYADKNGYVFERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQ 214
           V LRY +K G + ERF+G  HVT TT +SLK A+D+LF K+ L+ SR+  QGYDGASNMQ
Sbjct: 403 VVLRYVNKYGCIVERFLGIVHVTTTTAMSLKIAIDELFCKHSLTTSRIRGQGYDGASNMQ 462

Query: 215 GEFNGLRTLIMNKNECAYYIHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPLCK 274
           G+F+GL+TLI+ +N CA+Y+HCF HQLQLA++A+A+ H Q+NS F+VI+ + NV G  CK
Sbjct: 463 GQFSGLKTLILRENPCAFYVHCFAHQLQLALIAIARDHLQVNSLFSVISTLTNVVGGSCK 522

Query: 275 R 275
           R
Sbjct: 523 R 523

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439181|ref|XP_003589867.1| hypothetical protein MTR_1g040620 [Medicago truncatula] gi|355478915|gb|AES60118.1| hypothetical protein MTR_1g040620 [Medicago truncatula]

 Score =  254 bits (649), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 139/300 (46%), Positives = 179/300 (59%), Gaps = 46/300 (15%)

Query: 21  EIGEQASGETFTKNEFSNWKKPKRLQERIGGPNSAHNKA--------------------- 59
           EIGE    + F    FSNWKK  RL   +GGPNSAHN+A                     
Sbjct: 126 EIGENKGWDAFFTERFSNWKKKDRLNVHVGGPNSAHNQAWRKCNALMNQKQHIEVVVNKQ 185

Query: 60  ------------------------MGLTFCGHNEYDNSSNQGNYILTLRFLADHNEDIKR 95
                                   +GL F G +E ++S N+GN++  L+FLA ++++   
Sbjct: 186 SDLVKREYRIHLTGTIECIRLLLKLGLAFRGDDESEDSKNKGNFLYILQFLAKNDKEFGE 245

Query: 96  VTLKNAPRNNLLIALSIQKDLVRVCSIEITNVIIRDVGDALFSILIDESRDASTKEQMVV 155
           V LK    N  L+A SIQKD+V+  S   T  II D+ D LFSILIDESRD S KEQM V
Sbjct: 246 V-LKRCRGNLKLVAPSIQKDIVKAASFGTTKAIIVDLKDYLFSILIDESRDISNKEQMAV 304

Query: 156 ALRYADKNGYVFERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQG 215
            LRY DK G+V +RF+G  HV  TT+ISLK  L+ +F+ Y LS SR+  QGYDGASNM+G
Sbjct: 305 VLRYVDKKGHVIKRFLGVVHVENTTSISLKVELESMFANYNLSWSRVRGQGYDGASNMRG 364

Query: 216 EFNGLRTLIMNKNECAYYIHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPLCKR 275
           EFNGL++LI+ +N+ A+Y+HCF HQLQLA+VA+A+K D I  FF  + NV N+ G  CKR
Sbjct: 365 EFNGLKSLILKENKFAFYVHCFAHQLQLALVAVARKLDDIAWFFMAVNNVSNMVGGSCKR 424

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221982|ref|NP_173360.1| TTF-type zinc finger protein with HAT dimerization domain [Arabidopsis thaliana] gi|332191703|gb|AEE29824.1| TTF-type zinc finger protein with HAT dimerization domain [Arabidopsis thaliana]

 Score =  250 bits (638), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 129/302 (42%), Positives = 180/302 (59%), Gaps = 46/302 (15%)

Query: 20  NEIGEQASGETFTKNEFSNWKKPKRLQERIG-GPNSAHNKA------------------- 59
           ++ G Q   ++F    F +W K  RL + +G   NS HN A                   
Sbjct: 101 DQTGNQGGSDSFLSTGFCSWNKADRLDQHVGLDVNSFHNNAKRKCEDLMRQGQSIKHALH 160

Query: 60  --------------------------MGLTFCGHNEYDNSSNQGNYILTLRFLADHNEDI 93
                                      GL F GH+E + S+N+GN++  L++ A  NE +
Sbjct: 161 KQTDVVKNDYRIWLNASIDVSRHLLHQGLPFRGHDESEESTNKGNFVELLKYTAGQNEVV 220

Query: 94  KRVTLKNAPRNNLLIALSIQKDLVRVCSIEITNVIIRDVGDALFSILIDESRDASTKEQM 153
           K+V LKNAP+NN + +  IQKD+V   S E+T  II ++ + +F +L+DES DAS KEQM
Sbjct: 221 KKVVLKNAPKNNQMTSPPIQKDIVHCFSKEVTRSIIEEMDNDVFGLLVDESADASDKEQM 280

Query: 154 VVALRYADKNGYVFERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNM 213
            V  R+ DK G V ERFIG  HV  T+++SLK A+D LF+KYGLS+ +L  QGYDGASNM
Sbjct: 281 AVVFRFVDKYGVVKERFIGVIHVQETSSLSLKSAIDSLFAKYGLSLKKLRGQGYDGASNM 340

Query: 214 QGEFNGLRTLIMNKNECAYYIHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPLC 273
           +GEFNGLR+LI+ ++  AYY+HCF HQLQL ++A+AKKH ++  FF +I+ ++NV G  C
Sbjct: 341 KGEFNGLRSLILKESSSAYYVHCFAHQLQLVVMAVAKKHVEVGEFFYMISVLLNVVGASC 400

Query: 274 KR 275
           KR
Sbjct: 401 KR 402

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8954063|gb|AAF82236.1|AC069143_12 Contains similarity to a transposable element Tip100 protein for transposase from Ipomoea purpurea gb|4063769 and is a member of the transmembrane 4 family PF|00335 [Arabidopsis thaliana]

 Score =  250 bits (638), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 129/302 (42%), Positives = 180/302 (59%), Gaps = 46/302 (15%)

Query: 20  NEIGEQASGETFTKNEFSNWKKPKRLQERIG-GPNSAHNKA------------------- 59
           ++ G Q   ++F    F +W K  RL + +G   NS HN A                   
Sbjct: 143 DQTGNQGGSDSFLSTGFCSWNKADRLDQHVGLDVNSFHNNAKRKCEDLMRQGQSIKHALH 202

Query: 60  --------------------------MGLTFCGHNEYDNSSNQGNYILTLRFLADHNEDI 93
                                      GL F GH+E + S+N+GN++  L++ A  NE +
Sbjct: 203 KQTDVVKNDYRIWLNASIDVSRHLLHQGLPFRGHDESEESTNKGNFVELLKYTAGQNEVV 262

Query: 94  KRVTLKNAPRNNLLIALSIQKDLVRVCSIEITNVIIRDVGDALFSILIDESRDASTKEQM 153
           K+V LKNAP+NN + +  IQKD+V   S E+T  II ++ + +F +L+DES DAS KEQM
Sbjct: 263 KKVVLKNAPKNNQMTSPPIQKDIVHCFSKEVTRSIIEEMDNDVFGLLVDESADASDKEQM 322

Query: 154 VVALRYADKNGYVFERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNM 213
            V  R+ DK G V ERFIG  HV  T+++SLK A+D LF+KYGLS+ +L  QGYDGASNM
Sbjct: 323 AVVFRFVDKYGVVKERFIGVIHVQETSSLSLKSAIDSLFAKYGLSLKKLRGQGYDGASNM 382

Query: 214 QGEFNGLRTLIMNKNECAYYIHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPLC 273
           +GEFNGLR+LI+ ++  AYY+HCF HQLQL ++A+AKKH ++  FF +I+ ++NV G  C
Sbjct: 383 KGEFNGLRSLILKESSSAYYVHCFAHQLQLVVMAVAKKHVEVGEFFYMISVLLNVVGASC 442

Query: 274 KR 275
           KR
Sbjct: 443 KR 444

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230069|ref|NP_189620.1| General transcription factor 2-related zinc finger protein [Arabidopsis thaliana] gi|332644085|gb|AEE77606.1| General transcription factor 2-related zinc finger protein [Arabidopsis thaliana]

 Score =  247 bits (631), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 116/222 (52%), Positives = 162/222 (72%)

Query: 54  SAHNKAMGLTFCGHNEYDNSSNQGNYILTLRFLADHNEDIKRVTLKNAPRNNLLIALSIQ 113
           S H    GL F GH+E + S+N+GN++  L+++A  NE +K+V LKNAP+NN + +  IQ
Sbjct: 49  SRHLLHQGLPFRGHDESEESTNKGNFLELLKYIAGQNEVVKKVVLKNAPKNNQMTSPPIQ 108

Query: 114 KDLVRVCSIEITNVIIRDVGDALFSILIDESRDASTKEQMVVALRYADKNGYVFERFIGF 173
           KD+V   S E+T  II ++ + +F +L+DES DAS KEQM V  R+ DK G V ERFIG 
Sbjct: 109 KDIVHCFSEEVTRSIIEEMDNDVFGLLVDESADASDKEQMAVVFRFVDKYGVVKERFIGV 168

Query: 174 KHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYY 233
            HV  T+++SLK A+D LF+KYGLS+ +L  +GYDGASNM+G+FNGLR+LI+ +N  AYY
Sbjct: 169 IHVQETSSLSLKSAIDSLFAKYGLSLKKLRGKGYDGASNMKGKFNGLRSLILKENSSAYY 228

Query: 234 IHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPLCKR 275
           +HCF HQLQL ++A+AKKH ++  FF +I+ ++NV G  CKR
Sbjct: 229 VHCFAHQLQLVVMAVAKKHVEVGEFFYMISVLLNVVGAFCKR 270

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479193|ref|NP_001154499.1| TTF-type zinc finger protein with HAT dimerisation domain [Arabidopsis thaliana] gi|330250919|gb|AEC06013.1| TTF-type zinc finger protein with HAT dimerisation domain [Arabidopsis thaliana]

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 123/296 (41%), Positives = 172/296 (58%), Gaps = 45/296 (15%)

Query: 25  QASGETFTKNEFSNWKKPKRLQERIGGPNSAHNKAM------------------------ 60
           ++  +TF    F  WK P+ L+E +G  NS HN A+                        
Sbjct: 40  KSGSDTFATKGFDTWKNPQSLREHVGLVNSFHNNALKRADCLMRQGQSIVHAFYKQDDIV 99

Query: 61  ---------------------GLTFCGHNEYDNSSNQGNYILTLRFLADHNEDIKRVTLK 99
                                GLTF GH+E  +S+N+GN++  +++ A  NE + +V L+
Sbjct: 100 KGEYRIRLNASIDCCRYLVRQGLTFRGHDESVDSANRGNFLELVKYTAGQNEVVSKVVLE 159

Query: 100 NAPRNNLLIALSIQKDLVRVCSIEITNVIIRDVGDALFSILIDESRDASTKEQMVVALRY 159
           NAP+NN ++   IQ+D+V     E+   II++V   +F +++DES D   KEQMVV  R+
Sbjct: 160 NAPKNNQMVCPKIQRDIVHCFVEEVIRSIIQEVDHDVFCLMVDESADIFDKEQMVVVFRF 219

Query: 160 ADKNGYVFERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNG 219
            DK+  V ERFIG  HV  T +  LK A+D LF+K+GLSI ++  Q YDGASNM+GEFNG
Sbjct: 220 VDKHATVKERFIGLIHVKETFSAFLKCAIDSLFAKHGLSIKQIRGQDYDGASNMKGEFNG 279

Query: 220 LRTLIMNKNECAYYIHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPLCKR 275
           LR LI+ +N  AYYIHCF HQLQL +VA+AKKH +I  FF++I+ +INV    CKR
Sbjct: 280 LRYLILRENSSAYYIHCFAHQLQLVVVAVAKKHFEIGDFFDMISVLINVVEASCKR 335

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479195|ref|NP_001154500.1| TTF-type zinc finger protein with HAT dimerisation domain [Arabidopsis thaliana] gi|330250920|gb|AEC06014.1| TTF-type zinc finger protein with HAT dimerisation domain [Arabidopsis thaliana]

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 123/296 (41%), Positives = 172/296 (58%), Gaps = 45/296 (15%)

Query: 25  QASGETFTKNEFSNWKKPKRLQERIGGPNSAHNKAM------------------------ 60
           ++  +TF    F  WK P+ L+E +G  NS HN A+                        
Sbjct: 40  KSGSDTFATKGFDTWKNPQSLREHVGLVNSFHNNALKRADCLMRQGQSIVHAFYKQDDIV 99

Query: 61  ---------------------GLTFCGHNEYDNSSNQGNYILTLRFLADHNEDIKRVTLK 99
                                GLTF GH+E  +S+N+GN++  +++ A  NE + +V L+
Sbjct: 100 KGEYRIRLNASIDCCRYLVRQGLTFRGHDESVDSANRGNFLELVKYTAGQNEVVSKVVLE 159

Query: 100 NAPRNNLLIALSIQKDLVRVCSIEITNVIIRDVGDALFSILIDESRDASTKEQMVVALRY 159
           NAP+NN ++   IQ+D+V     E+   II++V   +F +++DES D   KEQMVV  R+
Sbjct: 160 NAPKNNQMVCPKIQRDIVHCFVEEVIRSIIQEVDHDVFCLMVDESADIFDKEQMVVVFRF 219

Query: 160 ADKNGYVFERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNG 219
            DK+  V ERFIG  HV  T +  LK A+D LF+K+GLSI ++  Q YDGASNM+GEFNG
Sbjct: 220 VDKHATVKERFIGLIHVKETFSAFLKCAIDSLFAKHGLSIKQIRGQDYDGASNMKGEFNG 279

Query: 220 LRTLIMNKNECAYYIHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPLCKR 275
           LR LI+ +N  AYYIHCF HQLQL +VA+AKKH +I  FF++I+ +INV    CKR
Sbjct: 280 LRYLILRENSSAYYIHCFAHQLQLVVVAVAKKHFEIGDFFDMISVLINVVEASCKR 335

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19225003|gb|AAL86479.1|AC077693_18 putative transposase [Oryza sativa Japonica Group]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 118/290 (40%), Positives = 170/290 (58%), Gaps = 45/290 (15%)

Query: 31  FTKNEFSNWKKPKRLQERIGGPNSAHNKAM------------------------------ 60
           F  + + NW K   L + +GG  SAHNKA                               
Sbjct: 152 FVTDGWRNWNKADALDKHVGGITSAHNKAQEKYNLFVSGGPSIDNVIVKVSNESEIHYKA 211

Query: 61  ---------------GLTFCGHNEYDNSSNQGNYILTLRFLADHNEDIKRVTLKNAPRNN 105
                          GL F GH+E + SSN+GN+I  L++LA++N+++ R+ LKNAP N 
Sbjct: 212 RLTYSLRCLRYLLNQGLAFRGHDESEESSNRGNFIELLKWLAENNKEVDRLVLKNAPGNC 271

Query: 106 LLIALSIQKDLVRVCSIEITNVIIRDVGDALFSILIDESRDASTKEQMVVALRYADKNGY 165
           +L   SIQ++++  C+ E T  II ++GD  ++IL DE  D S KEQ+ + +RY DK G 
Sbjct: 272 ILTCSSIQREIIHCCADETTKRIIEELGDDHYAILADECSDLSHKEQLALCVRYIDKLGR 331

Query: 166 VFERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIM 225
           V ERF+G  HV  TT+ +LK+A+  L S + LS S++  QGYDGASNM+G+ NGL+TLIM
Sbjct: 332 VCERFLGVVHVASTTSAALKKAILTLLSDHHLSPSQIRGQGYDGASNMKGKINGLKTLIM 391

Query: 226 NKNECAYYIHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPLCKR 275
            ++  AYYIHCF HQLQL +V++AK +D    FF  +++++N+ G  CKR
Sbjct: 392 KESPSAYYIHCFAHQLQLVLVSVAKGNDDCVWFFTQVSHLLNIVGTSCKR 441

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233987|ref|NP_192704.1| uncharacterized protein [Arabidopsis thaliana] gi|4538896|emb|CAB39633.1| putative protein [Arabidopsis thaliana] gi|7267661|emb|CAB78089.1| putative protein [Arabidopsis thaliana] gi|332657378|gb|AEE82778.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 116/266 (43%), Positives = 165/266 (62%), Gaps = 30/266 (11%)

Query: 20  NEIGEQASGETFTKNEFSNWKKPKRLQERIG-GPNSAHNKA---------MGLTFCGHNE 69
           ++ G Q   ++F    F +W K  RL + +G   NS HN A          GL+F GH+E
Sbjct: 101 DQAGNQGGSDSFLSTGFCSWNKADRLDQHVGLDVNSFHNNAKRKCEDLMRQGLSFRGHDE 160

Query: 70  YDNSSNQGNYILTLRFLADHNEDIKRVTLKNAPRNNLLIALSIQKDLVRVCSIEITNVII 129
            + S+N+GN++  L++ A  NE +K+V LKNAP+NN + +  IQKD+V   S E+T  II
Sbjct: 161 SEESTNKGNFLELLKYTAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIVHCFSEEVTRSII 220

Query: 130 RDVGDALFSILIDESRDASTKEQMVVALRYADKNGYVFERFIGFKHVTCTTTISLKEALD 189
            ++ + +F +L+DES DAS KEQM V  R+ DK G V ERFIG  HV  T+++SLK A+D
Sbjct: 221 EEMDNDVFGLLVDESADASNKEQMTVVFRFVDKYGVVKERFIGVIHVKETSSLSLKSAID 280

Query: 190 QLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCFVHQLQLAIVAMA 249
            LF+KYGLS+ +L  QGYDGASNM+GEFNGLR+LI+ +                    +A
Sbjct: 281 SLFAKYGLSLKKLRGQGYDGASNMKGEFNGLRSLILKE--------------------IA 320

Query: 250 KKHDQINSFFNVIANVINVDGPLCKR 275
           KKH ++  FF++I+ ++NV G  C R
Sbjct: 321 KKHVEVGEFFDMISVLLNVVGASCTR 346

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
TAIR|locus:2202165	769	AT1G19260 [Arabidopsis thalian	0.807	0.288	0.527	2.3e-66
TAIR|locus:4515102803	592	AT2G06541 [Arabidopsis thalian	0.781	0.363	0.506	3.3e-61
TAIR|locus:2829839	505	AT3G29763 "AT3G29763" [Arabido	0.807	0.439	0.522	1.5e-60
TAIR|locus:2118430	664	AT4G09660 [Arabidopsis thalian	0.756	0.313	0.477	4.2e-55
TAIR|locus:2093847	522	AT3G29450 "AT3G29450" [Arabido	0.338	0.178	0.655	5.3e-53
TAIR|locus:2829849	536	AT3G29765 [Arabidopsis thalian	0.596	0.305	0.554	3e-46
TAIR|locus:2033523	496	AT1G41920 "AT1G41920" [Arabido	0.767	0.425	0.442	1.5e-44
UNIPROTKB|E2R5I7	1073	ZMYM1 "Uncharacterized protein	0.723	0.185	0.285	2.1e-23
UNIPROTKB|Q5SW02	1067	ZMYM1 "Zinc finger MYM-type pr	0.723	0.186	0.270	5.6e-21
UNIPROTKB|Q5SVZ6	1142	ZMYM1 "Zinc finger MYM-type pr	0.723	0.174	0.270	6.8e-21

TAIR|locus:2202165 AT1G19260 [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
 Identities = 117/222 (52%), Positives = 161/222 (72%)

Query:    54 SAHNKAMGLTFCGHNEYDNSSNQGNYILTLRFLADHNEDIKRVTLKNAPRNNLLIALSIQ 113
             S H    GL F GH+E + S+N+GN++  L++ A  NE +K+V LKNAP+NN + +  IQ
Sbjct:   181 SRHLLHQGLPFRGHDESEESTNKGNFVELLKYTAGQNEVVKKVVLKNAPKNNQMTSPPIQ 240

Query:   114 KDLVRVCSIEITNVIIRDVGDALFSILIDESRDASTKEQMVVALRYADKNGYVFERFIGF 173
             KD+V   S E+T  II ++ + +F +L+DES DAS KEQM V  R+ DK G V ERFIG 
Sbjct:   241 KDIVHCFSKEVTRSIIEEMDNDVFGLLVDESADASDKEQMAVVFRFVDKYGVVKERFIGV 300

Query:   174 KHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYY 233
              HV  T+++SLK A+D LF+KYGLS+ +L  QGYDGASNM+GEFNGLR+LI+ ++  AYY
Sbjct:   301 IHVQETSSLSLKSAIDSLFAKYGLSLKKLRGQGYDGASNMKGEFNGLRSLILKESSSAYY 360

Query:   234 IHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPLCKR 275
             +HCF HQLQL ++A+AKKH ++  FF +I+ ++NV G  CKR
Sbjct:   361 VHCFAHQLQLVVMAVAKKHVEVGEFFYMISVLLNVVGASCKR 402

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:4515102803 AT2G06541 [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
 Identities = 109/215 (50%), Positives = 151/215 (70%)

Query:    61 GLTFCGHNEYDNSSNQGNYILTLRFLADHNEDIKRVTLKNAPRNNLLIALSIQKDLVRVC 120
             GLTF GH+E  +S+N+GN++  +++ A  NE + +V L+NAP+NN ++   IQ+D+V   
Sbjct:   121 GLTFRGHDESVDSANRGNFLELVKYTAGQNEVVSKVVLENAPKNNQMVCPKIQRDIVHCF 180

Query:   121 SIEITNVIIRDVGDALFSILIDESRDASTKEQMVVALRYADKNGYVFERFIGFKHVTCTT 180
               E+   II++V   +F +++DES D   KEQMVV  R+ DK+  V ERFIG  HV  T 
Sbjct:   181 VEEVIRSIIQEVDHDVFCLMVDESADIFDKEQMVVVFRFVDKHATVKERFIGLIHVKETF 240

Query:   181 TISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCFVHQ 240
             +  LK A+D LF+K+GLSI ++  Q YDGASNM+GEFNGLR LI+ +N  AYYIHCF HQ
Sbjct:   241 SAFLKCAIDSLFAKHGLSIKQIRGQDYDGASNMKGEFNGLRYLILRENSSAYYIHCFAHQ 300

Query:   241 LQLAIVAMAKKHDQINSFFNVIANVINVDGPLCKR 275
             LQL +VA+AKKH +I  FF++I+ +INV    CKR
Sbjct:   301 LQLVVVAVAKKHFEIGDFFDMISVLINVVEASCKR 335

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2829839 AT3G29763 "AT3G29763" [Arabidopsis thaliana (taxid:3702)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 116/222 (52%), Positives = 162/222 (72%)

Query:    54 SAHNKAMGLTFCGHNEYDNSSNQGNYILTLRFLADHNEDIKRVTLKNAPRNNLLIALSIQ 113
             S H    GL F GH+E + S+N+GN++  L+++A  NE +K+V LKNAP+NN + +  IQ
Sbjct:    49 SRHLLHQGLPFRGHDESEESTNKGNFLELLKYIAGQNEVVKKVVLKNAPKNNQMTSPPIQ 108

Query:   114 KDLVRVCSIEITNVIIRDVGDALFSILIDESRDASTKEQMVVALRYADKNGYVFERFIGF 173
             KD+V   S E+T  II ++ + +F +L+DES DAS KEQM V  R+ DK G V ERFIG 
Sbjct:   109 KDIVHCFSEEVTRSIIEEMDNDVFGLLVDESADASDKEQMAVVFRFVDKYGVVKERFIGV 168

Query:   174 KHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYY 233
              HV  T+++SLK A+D LF+KYGLS+ +L  +GYDGASNM+G+FNGLR+LI+ +N  AYY
Sbjct:   169 IHVQETSSLSLKSAIDSLFAKYGLSLKKLRGKGYDGASNMKGKFNGLRSLILKENSSAYY 228

Query:   234 IHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPLCKR 275
             +HCF HQLQL ++A+AKKH ++  FF +I+ ++NV G  CKR
Sbjct:   229 VHCFAHQLQLVVMAVAKKHVEVGEFFYMISVLLNVVGAFCKR 270

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118430 AT4G09660 [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
 Identities = 104/218 (47%), Positives = 145/218 (66%)

Query:    20 NEIGEQASGETFTKNEFSNWKKPKRLQERIG-GPNSAHNKA---------MGLTFCGHNE 69
             ++ G Q   ++F    F +W K  RL + +G   NS HN A          GL+F GH+E
Sbjct:   101 DQAGNQGGSDSFLSTGFCSWNKADRLDQHVGLDVNSFHNNAKRKCEDLMRQGLSFRGHDE 160

Query:    70 YDNSSNQGNYILTLRFLADHNEDIKRVTLKNAPRNNLLIALSIQKDLVRVCSIEITNVII 129
              + S+N+GN++  L++ A  NE +K+V LKNAP+NN + +  IQKD+V   S E+T  II
Sbjct:   161 SEESTNKGNFLELLKYTAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIVHCFSEEVTRSII 220

Query:   130 RDVGDALFSILIDESRDASTKEQMVVALRYADKNGYVFERFIGFKHVTCTTTISLKEALD 189
              ++ + +F +L+DES DAS KEQM V  R+ DK G V ERFIG  HV  T+++SLK A+D
Sbjct:   221 EEMDNDVFGLLVDESADASNKEQMTVVFRFVDKYGVVKERFIGVIHVKETSSLSLKSAID 280

Query:   190 QLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNK 227
              LF+KYGLS+ +L  QGYDGASNM+GEFNGLR+LI+ +
Sbjct:   281 SLFAKYGLSLKKLRGQGYDGASNMKGEFNGLRSLILKE 318

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2093847 AT3G29450 "AT3G29450" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 5.3e-53, Sum P(2) = 5.3e-53
 Identities = 61/93 (65%), Positives = 75/93 (80%)

Query:   183 SLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCFVHQLQ 242
             SLK A+D LF+K GLSI +L  QGYDGASNM+GEFNGLR+LI+ +N  AYYIHCF HQLQ
Sbjct:   194 SLKCAIDSLFAKLGLSIKQLRGQGYDGASNMKGEFNGLRSLILRENSSAYYIHCFAHQLQ 253

Query:   243 LAIVAMAKKHDQINSFFNVIANVINVDGPLCKR 275
             L +VA+AKKH +I  FF++I+ +INV G  CKR
Sbjct:   254 LVVVAVAKKHFEIGDFFDMISVLINVVGASCKR 286

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2829849 AT3G29765 [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 91/164 (55%), Positives = 123/164 (75%)

Query:   112 IQKDLVRVCSIEITNVIIRDVGDALFSILIDESRDASTKEQMVVALRYADKNGYVFERFI 171
             IQKD+V   S E+T  II ++ + +F +L+DES DAS KEQM V  R+ DK G V ERFI
Sbjct:     6 IQKDIVHCFSEEVTRSIIEEMDNDVFGLLVDESADASDKEQMAVVFRFVDKYGVVKERFI 65

Query:   172 GFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECA 231
             G  HV  T+++SLK A+D LF+KYGLS+ +L  +GYDGASNM+G+FNGLR+LI+ +N  A
Sbjct:    66 GVIHVQETSSLSLKSAIDSLFAKYGLSLKKLRGKGYDGASNMKGKFNGLRSLILKENSSA 125

Query:   232 YYIHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPLCKR 275
             YY+HCF HQLQL ++A+AKKH ++  FF +I+ ++NV G  CKR
Sbjct:   126 YYVHCFAHQLQLVVMAVAKKHVEVGEFFYMISVLLNVVGASCKR 169

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2033523 AT1G41920 "AT1G41920" [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 96/217 (44%), Positives = 146/217 (67%)

Query:    62 LTFCGHNEYDNSSNQGNYILTLRFLADHNEDIKRVTLKNAPRNNLLIALSIQKDLVRVCS 121
             L F GH+E D S+N+GN++  +++    NE I +V L+NAP+NN ++   + + L+    
Sbjct:    12 LPFRGHDESDESANRGNFLELVKYTVGQNEVISKVVLENAPKNNQMVFDEMSEPLIPETR 71

Query:   122 IEI-TNVIIRD-VGDALFSILIDES--RDASTKEQMVVALRYADKNGYVFERFIGFKHVT 177
               + ++ ++ D + D  + ++  ++   + S KEQM V  R+ DK+G V ERFIG  HV 
Sbjct:    72 DPVPSSFLLLDLILD--YPVVWQQTVQSNVSDKEQMAVVFRFVDKHGTVKERFIGLIHVK 129

Query:   178 CTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCF 237
              T++ SLK A+D LF+K GLS+ +L  QGYDGA+NM+GEFN LR+LI+ +N  AYYIHCF
Sbjct:   130 ETSSASLKCAIDSLFAKRGLSMKQLRGQGYDGANNMKGEFNWLRSLILRENSSAYYIHCF 189

Query:   238 VHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPLCK 274
              HQLQL +VA+AKK  ++  FF++I+ ++NV G  CK
Sbjct:   190 AHQLQLVVVAVAKKQFEVGDFFDMISALLNVVGASCK 226

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E2R5I7 ZMYM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 264 (98.0 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
 Identities = 59/207 (28%), Positives = 112/207 (54%)

Query:    66 GHNEYDNSSNQGNYILTLRFLA-DHNEDIKRVTLKNAPRNNLLIALSIQKDLVRVCSIEI 124
             G+++  +S N+GN++  L   A D  E+I R  L N+ + +   +  IQ D++ +   E+
Sbjct:   505 GNDQSISSMNKGNFLELLEIRAKDKGEEIFR--LMNS-QVDFYNSTQIQNDIIEIIKTEM 561

Query:   125 TNVIIRDVG-DALFSILIDESRDASTKEQMVVALRYADKNG---YVFERFIGFKHVTCTT 180
                I+ ++   + FSI+ DE+ D++TKEQ+ + +RY  K      + ERF+GF  V   +
Sbjct:   562 LQDIVDEINVSSAFSIICDETTDSATKEQLAIYVRYPQKMSKAILIKERFLGFIDVKEMS 621

Query:   181 TISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCFVHQ 240
                L   +     + G+ ++++  Q YD  +N++G+FN +      +   A YIHC+ H 
Sbjct:   622 GTKLHRTIKTYLQQIGVDLNKICGQAYDSTANLRGKFNKIAAEFKKEEPRALYIHCYAHF 681

Query:   241 LQLAIVAMAKKHDQINSFFNVIANVIN 267
             L LA++   K+  ++ S  N ++++ N
Sbjct:   682 LDLAVIRFCKEVKELRSTLNTLSSLFN 708

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q5SW02 ZMYM1 "Zinc finger MYM-type protein 1" [Homo sapiens (taxid:9606)]

 Score = 247 (92.0 bits), Expect = 5.6e-21, Sum P(2) = 5.6e-21
 Identities = 56/207 (27%), Positives = 109/207 (52%)

Query:    66 GHNEYDNSSNQGNYILTLRFLA-DHNEDIKRVTLKNAPRNNLLIALSIQKDLVRVCSIEI 124
             G+++  +S N+GN++  L   A D  E+  R  L N+ + +   +  IQ D++ +   E+
Sbjct:   498 GNDQSVSSVNKGNFLELLEMRAKDKGEETFR--LMNS-QVDFYNSTQIQSDIIEIIKTEM 554

Query:   125 TNVIIRDVGDA-LFSILIDESRDASTKEQMVVALRYADKNG---YVFERFIGFKHVTCTT 180
                I+ ++ D+  FSI+ DE+ +++ KEQ+ + +RY  K+     + ERF+GF      T
Sbjct:   555 LQDIVNEINDSSAFSIICDETINSAMKEQLSICVRYPQKSSKAILIKERFLGFVDTEEMT 614

Query:   181 TISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCFVHQ 240
                L   +     + G+ + ++H Q YD  +N++ +FN +      +   A YIHC+ H 
Sbjct:   615 GTHLHRTIKTYLQQIGVDMDKIHGQAYDSTTNLKIKFNKIAAEFKKEEPRALYIHCYAHF 674

Query:   241 LQLAIVAMAKKHDQINSFFNVIANVIN 267
             L L+I+   K+  ++ S    ++++ N
Sbjct:   675 LDLSIIRFCKEVKELRSALKTLSSLFN 701

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|Q5SVZ6 ZMYM1 "Zinc finger MYM-type protein 1" [Homo sapiens (taxid:9606)]

 Score = 247 (92.0 bits), Expect = 6.8e-21, Sum P(2) = 6.8e-21
 Identities = 56/207 (27%), Positives = 109/207 (52%)

Query:    66 GHNEYDNSSNQGNYILTLRFLA-DHNEDIKRVTLKNAPRNNLLIALSIQKDLVRVCSIEI 124
             G+++  +S N+GN++  L   A D  E+  R  L N+ + +   +  IQ D++ +   E+
Sbjct:   573 GNDQSVSSVNKGNFLELLEMRAKDKGEETFR--LMNS-QVDFYNSTQIQSDIIEIIKTEM 629

Query:   125 TNVIIRDVGDA-LFSILIDESRDASTKEQMVVALRYADKNG---YVFERFIGFKHVTCTT 180
                I+ ++ D+  FSI+ DE+ +++ KEQ+ + +RY  K+     + ERF+GF      T
Sbjct:   630 LQDIVNEINDSSAFSIICDETINSAMKEQLSICVRYPQKSSKAILIKERFLGFVDTEEMT 689

Query:   181 TISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCFVHQ 240
                L   +     + G+ + ++H Q YD  +N++ +FN +      +   A YIHC+ H 
Sbjct:   690 GTHLHRTIKTYLQQIGVDMDKIHGQAYDSTTNLKIKFNKIAAEFKKEEPRALYIHCYAHF 749

Query:   241 LQLAIVAMAKKHDQINSFFNVIANVIN 267
             L L+I+   K+  ++ S    ++++ N
Sbjct:   750 LDLSIIRFCKEVKELRSALKTLSSLFN 776

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00130851 hypothetical protein (788 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	275
pfam14291	179	pfam14291, DUF4371, Domain of unknown function (DU	2e-39

>gnl|CDD|222655 pfam14291, DUF4371, Domain of unknown function (DUF4371)

 Score =  135 bits (341), Expect = 2e-39
 Identities = 74/202 (36%), Positives = 103/202 (50%), Gaps = 34/202 (16%)

Query: 29  ETFTKNEFSNWKKPKRLQERIGGPNSAHNKAMGLTFCGHNEYDNSSNQGNYILTLRFLAD 88
           + F    F NW K +R  + +G  NSAHN A         + D+  NQ   I        
Sbjct: 1   DAFVFEGFRNWHKKERFDKHVGKVNSAHNNAQ-------EKCDDLMNQKQSI-------- 45

Query: 89  HNEDIKRVTLKNAPRNNLLIALSIQ--KDLVRVC--------SIEITNVIIRDVGDALFS 138
            +E +   + +   +    +  SI   + L+R          S E  N      G+  F 
Sbjct: 46  -SEALASQSEQEKAQYKARLNYSIDCARFLLRQGLAFRGHDESEESLNK-----GN--FL 97

Query: 139 ILID-ESRDASTKEQMVVALRYADKNGYVFERFIGFKHVTCTTTISLKEALDQLFSKYGL 197
            L++  + D S KEQM V LRY DK G V ERF+G  HV  TT+++LK A+D L +K+GL
Sbjct: 98  ELLEWLAEDVSQKEQMAVVLRYVDKKGQVKERFLGVVHVEETTSLTLKSAIDSLLAKHGL 157

Query: 198 SISRLHRQGYDGASNMQGEFNG 219
           S+S++  QGYDGASNM+GEFNG
Sbjct: 158 SLSKVRGQGYDGASNMKGEFNG 179

Length = 179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	275
PF14291	235	DUF4371: Domain of unknown function (DUF4371)	100.0
PF04937	153	DUF659: Protein of unknown function (DUF 659); Int	99.64
smart00597	90	ZnF_TTF zinc finger in transposases and transcript	99.11
KOG1121	641	consensus Tam3-transposase (Ac family) [Replicatio	99.04

>PF14291 DUF4371: Domain of unknown function (DUF4371)

Probab=100.00  E-value=2.8e-53  Score=367.99  Aligned_cols=190  Identities=39%  Similarity=0.675  Sum_probs=182.1

Q ss_pred             CcccccccccccCchhhhcccCCCChhhhhhc---------------------------------------------Ccc
Q 039123           29 ETFTKNEFSNWKKPKRLQERIGGPNSAHNKAM---------------------------------------------GLT   63 (275)
Q Consensus        29 ~~~~~~gf~~wk~~~~l~~H~~~~s~~H~~~~---------------------------------------------~l~   63 (275)
                      ++|+++||+|||+.++|++|+++.|..|+.|+                                             |||
T Consensus         1 ~aF~~~Gf~nWk~~~~~~~He~~~s~~H~~a~~~~~~~~~~~~~I~~~l~~~~~~~~~~nR~~L~~ii~~i~fL~~QgLa   80 (235)
T PF14291_consen    1 DAFVSNGFSNWKAAERFKKHEKSVSSSHKNAMEAWKEFKQQKQSIDSQLQKQRKEEIEENRQYLKRIIDVILFLARQGLA   80 (235)
T ss_pred             CCcccCChhhccccchHHhhCCCCCHHHHHHHHHHHHHhccccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            57999999999877889999854489999987                                             999


Q ss_pred             cccCCCCCCCCCcccHHHHHHHHhhccHHHHHHHHhcCCCcceecchhhHHHHHHHHhHHHHHHHHHHHcccceEEEEcc
Q 039123           64 FCGHNEYDNSSNQGNYILTLRFLADHNEDIKRVTLKNAPRNNLLIALSIQKDLVRVCSIEITNVIIRDVGDALFSILIDE  143 (275)
Q Consensus        64 ~rGh~e~~~~~n~gnf~~l~~l~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~~i~~~~~~i~~~i~~~i~~~~fsi~~De  143 (275)
                      ||||+|+.++.|+|||++|+++++++||.+++++...++.+..|+|+++|+++ +.+++.+++.|.+++++++|||++||
T Consensus        81 ~RGh~e~~~s~n~GNFl~ll~l~~~~d~~l~~~~~~~~~~~~~~~s~~iq~~i-~~~a~~v~~~I~~~v~~~~FSii~De  159 (235)
T PF14291_consen   81 FRGHDESEDSLNNGNFLELLELLAKYDPELKKHLSKNAPKNAKYSSKTIQNEI-EILADHVRQSIVEEVKSKYFSIIVDE  159 (235)
T ss_pred             cccCCccccccccccHHHHHHHHHhhcccchhhhhcccccceeccHHHHHHHH-HHHHHHHHHHHHhhccccceeeeeec
Confidence            99999999999999999999999999999999877888899999999999999 99999999999999998999999999


Q ss_pred             CCCCCCcceeeEEEEeeccCCceeeeeeceecccccccchHHHHHHHHHHhcCCCccceeeeeecCcccccccchh
Q 039123          144 SRDASTKEQMVVALRYADKNGYVFERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNG  219 (275)
Q Consensus       144 ttd~s~~~ql~i~vryvd~~~~i~e~fL~~~~~~~~tae~l~~~i~~~l~~~~l~~~~~~~~~~Dgas~m~g~~~g  219 (275)
                      |||+++++||+|+||||+.++.++|+||+|++++++||++|+++|.++|+++||++++|+||+|||||+|+|+++|
T Consensus       160 ttDis~~eQl~i~vRyv~~~~~i~E~Fl~f~~~~~~ta~~l~~~i~~~L~~~~l~~~~~~gq~yDgas~M~G~~~G  235 (235)
T PF14291_consen  160 TTDISNKEQLSICVRYVDKDGKIKERFLGFVELEDTTAESLFNAIKDVLEKLGLDLSNCRGQCYDGASNMSGKHNG  235 (235)
T ss_pred             cccccccchhhheeeeeccCcceeeeeeeeeccCCccHHHHHHHHHHHHHHcCCCHHHcCcccccChHhheeccCC
Confidence            9999999999999999998899999999999999999999999999999999999999999999999999999987

>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function

Probab=99.64  E-value=2.7e-15  Score=121.34  Aligned_cols=142  Identities=18%  Similarity=0.214  Sum_probs=112.5

Q ss_pred             hHHHHHHHHhHHHHHHHHH---HHcccceEEEEccCCCCCCcceeeEEEEeeccCCceeeeeeceecccc--cccchHHH
Q 039123          112 IQKDLVRVCSIEITNVIIR---DVGDALFSILIDESRDASTKEQMVVALRYADKNGYVFERFIGFKHVTC--TTTISLKE  186 (275)
Q Consensus       112 ~~~~~i~~~~~~i~~~i~~---~i~~~~fsi~~Dettd~s~~~ql~i~vryvd~~~~i~e~fL~~~~~~~--~tae~l~~  186 (275)
                      +...+++....++++.+.+   .-+..-+||++|+|+|..+...+.+.|..-.     ...||..+..++  +||+.|++
T Consensus         6 Lr~~lL~~~~~~v~~~~~~~k~~w~~~Gcsi~~DgWtd~~~~~lInf~v~~~~-----g~~Flksvd~s~~~~~a~~l~~   80 (153)
T PF04937_consen    6 LRGPLLDKEYKEVKEQVKEHKKSWKRTGCSIMSDGWTDRKGRSLINFMVYCPE-----GTVFLKSVDASSIIKTAEYLFE   80 (153)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHhcCEEEEEecCcCCCCCeEEEEEEEccc-----ccEEEEEEecccccccHHHHHH
Confidence            3344555555555544433   2223459999999999999999988885542     245788888876  79999999


Q ss_pred             HHHHHHHhcCCCccceeeeeecCcccccccchhHHHHHHhhCCceEEEcchhhHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 039123          187 ALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCFVHQLQLAIVAMAKKHDQINSFFNVIANV  265 (275)
Q Consensus       187 ~i~~~l~~~~l~~~~~~~~~~Dgas~m~g~~~gv~~~l~~~~p~~~~v~C~aH~LnL~~~~~~~~~~~~~~~~~~~~~i  265 (275)
                      .+.+++++.|  .++++.+.+|++++|.+.    ..+|.+++|.+++.+|.||.+||.++|.+ +++.+.++++..+.|
T Consensus        81 ll~~vIeeVG--~~nVvqVVTDn~~~~~~a----~~~L~~k~p~ifw~~CaaH~inLmledi~-k~~~i~~vi~~ak~i  152 (153)
T PF04937_consen   81 LLDEVIEEVG--EENVVQVVTDNASNMKKA----GKLLMEKYPHIFWTPCAAHCINLMLEDIG-KLPWIKEVIEKAKAI  152 (153)
T ss_pred             HHHHHHHHhh--hhhhhHHhccCchhHHHH----HHHHHhcCCCEEEechHHHHHHHHHHHHh-cChHHHHHHHhcccC
Confidence            9999999987  479999999999999654    45688889999999999999999999998 489999988877654

>smart00597 ZnF_TTF zinc finger in transposases and transcription factors

Probab=99.11  E-value=2.8e-11  Score=88.83  Aligned_cols=53  Identities=13%  Similarity=0.259  Sum_probs=42.8

Q ss_pred             cccCCCcceeccccccCCCccCccCCCCcccccccccccCchhhhcccCCCChhhhhhc
Q 039123            2 EKYFKRKPVMPPFLEKDENEIGEQASGETFTKNEFSNWKKPKRLQERIGGPNSAHNKAM   60 (275)
Q Consensus         2 ~~~~~~~fC~~C~~f~~~~~~~~~~~~~~~~~~gf~~wk~~~~l~~H~~~~s~~H~~~~   60 (275)
                      .+..|++||++|++|++.    +..+.++|+++||+|||+...|++|+  .|..|++|.
T Consensus        20 S~~~D~~fC~~C~lF~~~----~~~~~~~f~~~Gf~nwk~~~~l~~H~--~s~~H~~a~   72 (90)
T smart00597       20 SVEKDKAFCKACYLFRPG----RDGDSDLFVTEGFCSWNVERILKQHE--VSKRHRNAF   72 (90)
T ss_pred             ecccCcEEEEEEEeeccC----CCCCcCcccccCcCcchhhhhHHhhc--CCHHHHhHH
Confidence            356899999999999732    22356789999999999944599998  899998754

>KOG1121 consensus Tam3-transposase (Ac family) [Replication, recombination and repair]

Probab=99.04  E-value=5.9e-09  Score=102.95  Aligned_cols=179  Identities=15%  Similarity=0.200  Sum_probs=131.6

Q ss_pred             cHHHHHHHHhcCCCcceecchhhHHHHHHHHhHHHHHHHHHHHcc--cceEEEEccCCCC-CCcceeeEEEEeeccCCce
Q 039123           90 NEDIKRVTLKNAPRNNLLIALSIQKDLVRVCSIEITNVIIRDVGD--ALFSILIDESRDA-STKEQMVVALRYADKNGYV  166 (275)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~S~~~~~~~i~~~~~~i~~~i~~~i~~--~~fsi~~Dettd~-s~~~ql~i~vryvd~~~~i  166 (275)
                      .+.++.......| .....+.......+..++...+..+.+.+..  ..+++++|.|+|. ....++++..||+|.+|++
T Consensus       119 ~~~~~~~~~~~~P-~~~~~~~~t~~~~~~~~~~~~k~~~~~~~~~~~~~v~lT~d~w~~~~~~~~y~~~t~h~id~~~~l  197 (641)
T KOG1121|consen  119 EPGFRELLKHLNP-NYKLPSRSTLEADVLKIYEAEKPKLKEILEKIIGRVSLTTDLWSDSGTDEGYMVLTAHYIDRDWEL  197 (641)
T ss_pred             chhHHHHHHhcCC-CcccCChhHHHHHHHHHHHHHHHHHHHHHHccCCceEEEEeeecCCCCCcceEEEEEEEeccchHh
Confidence            5677774444444 4445554444444444444445555555555  7999999999987 6789999999999999999


Q ss_pred             eeeeeceecccccccchHHHHHHHHHHhcCCCccceeeeeecCcccccccchhHHHHHHhhCC-----ceEEEcchhhHH
Q 039123          167 FERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNE-----CAYYIHCFVHQL  241 (275)
Q Consensus       167 ~e~fL~~~~~~~~tae~l~~~i~~~l~~~~l~~~~~~~~~~Dgas~m~g~~~gv~~~l~~~~p-----~~~~v~C~aH~L  241 (275)
                      +..+|++...+.++++.|+..+..++.+|+|. .++...+.|++.  ..........+....+     ...+++|.+|.+
T Consensus       198 ~~~il~~~~~~~~~~~~i~~~~~~~~~~~~i~-~kv~~~~~~n~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~C~~~~~  274 (641)
T KOG1121|consen  198 HNKILSFCIPPPHLGKALASVLNECLLEWGIE-KKVFSITVDNVN--VSNIETLRDHLKSSNALLLLGKFFHVRCFAHIL  274 (641)
T ss_pred             hhheeeeecCCcchHHHHHHHHHHHHHhhChh-heEEEEeecccc--hhHHHHhhHHHhhcccceecceeeeeehhhhhh
Confidence            99999999555599999999999999999998 888999999911  1111222222322222     346899999999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhhhcCCCCC
Q 039123          242 QLAIVAMAKKHDQINSFFNVIANVINVDGPLCK  274 (275)
Q Consensus       242 nL~~~~~~~~~~~~~~~~~~~~~i~~~f~~S~k  274 (275)
                      ++.++++.+  ..+...+..+++.+.++..|..
T Consensus       275 ~~~v~~~l~--~~~~~~l~~ir~~v~~vk~s~~  305 (641)
T KOG1121|consen  275 NLIVQEGLK--EEFSSLLEKLRESVKYVKSSES  305 (641)
T ss_pred             hHHHHHHHH--HHHhHHHHHHHHHHHHHhcChH
Confidence            999999986  5678888899999999988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	275
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 7e-06
 Identities = 42/299 (14%), Positives = 90/299 (30%), Gaps = 70/299 (23%)

Query: 2   EKYFKRKPVMPPFLEK-----DENEIGEQASGETFTKNEFSN-WKKPKRLQE--RIGG-- 51
           E  ++ K ++  F +      D  ++ +       +K E  +       +    R+    
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDCKDV-QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71

Query: 52  ---PNSAHNKAMG---------LTFCGHNEY-DNSSNQGNYILTLRFLADHNEDIKRVTL 98
                    K +          L      E    S     YI     L  +N D +    
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL--YN-DNQVFAK 128

Query: 99  KNAPRNNLLIALSIQKDLVRVCSIEITNVIIRDVGDALF--SILIDES-RDASTKEQMVV 155
            N  R    + L  ++ L+ +   +  NV+I   G      + +  +       + +M  
Sbjct: 129 YNVSRLQPYLKL--RQALLELRPAK--NVLI--DGVLGSGKTWVALDVCLSYKVQCKM-- 180

Query: 156 ALRYADKNGYVFERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQG 215
                  +  +F  ++  K+  C +  ++ E L +L  +   + +       +    +  
Sbjct: 181 -------DFKIF--WLNLKN--CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 216 EFNGLRTLIMNKNECAYYIHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPLCK 274
               LR L+ +K     Y +C      L ++        + +     A   N     CK
Sbjct: 230 IQAELRRLLKSKP----YENC------LLVL------LNVQN-----AKAWNAFNLSCK 267

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	275
2bw3_A	534	Transposase; DNA recombination, transposition; 2.0	99.92

>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B

Probab=99.92  E-value=4.4e-25  Score=211.04  Aligned_cols=192  Identities=16%  Similarity=0.166  Sum_probs=159.5

Q ss_pred             CcccccCCCCCCCCCcccHHHHHHHHhhccHHHHHHHHhcCCCcceecchhhHHHHHHHHhHHHHHHHHHHHcc----cc
Q 039123           61 GLTFCGHNEYDNSSNQGNYILTLRFLADHNEDIKRVTLKNAPRNNLLIALSIQKDLVRVCSIEITNVIIRDVGD----AL  136 (275)
Q Consensus        61 ~l~~rGh~e~~~~~n~gnf~~l~~l~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~~i~~~~~~i~~~i~~~i~~----~~  136 (275)
                      |+||+.       .++++|+++++.+...+|.+.+.+.    .+...+|.......|..++..++++++++++.    ..
T Consensus        31 ~~Pf~~-------ve~~~F~~~l~~l~~~~p~~~~~~~----~~~~~ps~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~   99 (534)
T 2bw3_A           31 CRPFSA-------VSGSGFIDMIKFFIKVKAEYGEHVN----VEELLPSPITLSRKVTSDAKEKKALIGREIKSAVEKDG   99 (534)
T ss_dssp             TCCGGG-------GGCHHHHHHHHHHHHHHHHHCSCBC----HHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCcchh-------hCCHHHHHHHHHHHhhhhhhccccc----hhhcCCCcccHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence            888875       3567999999999877777632110    01123344433334555789999999999987    58


Q ss_pred             eEEEEccCCCC-CCcceeeEEEEeeccCCceeeeeeceeccc--ccccchHHHHHHHHHHhcCCCccceeeeeecCcccc
Q 039123          137 FSILIDESRDA-STKEQMVVALRYADKNGYVFERFIGFKHVT--CTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNM  213 (275)
Q Consensus       137 fsi~~Dettd~-s~~~ql~i~vryvd~~~~i~e~fL~~~~~~--~~tae~l~~~i~~~l~~~~l~~~~~~~~~~Dgas~m  213 (275)
                      |||++|+|||. .+.++|+|++||+ +++.+++++|++.+++  .+||++|++.|.++|++|||+..+++++.+|||++|
T Consensus       100 ~sl~~D~wt~~~~~~~~l~i~v~~i-~~~~~~~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l~~~~~v~~vtDnasn~  178 (534)
T 2bw3_A          100 ASATIDLWTDNYIKRNFLGVTLHYH-ENNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRGANV  178 (534)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEEE-ETTEEEEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEEECCCHHH
T ss_pred             eEEEEecccCCCCCcceeEEEEEEe-eCCceEEEEEeEeecCCCCCCHHHHHHHHHHHHHHcCCCcccceeEECCCHHHH
Confidence            99999999998 5899999999999 5889999999999998  499999999999999999998666778888999999


Q ss_pred             cccchhHHHHHHhhCCceEEEcchhhHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCCCCCC
Q 039123          214 QGEFNGLRTLIMNKNECAYYIHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPLCKR  275 (275)
Q Consensus       214 ~g~~~gv~~~l~~~~p~~~~v~C~aH~LnL~~~~~~~~~~~~~~~~~~~~~i~~~f~~S~kr  275 (275)
                      .+...+           ..++||++|.|||+++++++.++.+.+++++++++++||++|++|
T Consensus       179 ~~~~~~-----------~~~i~C~~H~lnLi~~~~l~~~~~~~~~l~~~~~iv~~i~~s~~~  229 (534)
T 2bw3_A          179 VKSLAN-----------NIRINCSSHLLSNVLENSFEETPELNMPILACKNIVKYFKKANLQ  229 (534)
T ss_dssp             HHHTTT-----------SEEEECHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHhc-----------CcccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccHhh
Confidence            876654           368999999999999999998899999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	275
d2bw3a2	447	c.55.3.12 (A:163-609) Transposase Hermes, catalyti	2e-11

>d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]} Length = 447

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Hermes transposase-like
domain: Transposase Hermes, catalytic domain
species: House fly (Musca domestica) [TaxId: 7370]

 Score = 61.6 bits (148), Expect = 2e-11
 Identities = 21/142 (14%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 137 FSILIDE-SRDASTKEQMVVALRYADKNGYVFERFIGFKHVTC--TTTISLKEALDQLFS 193
            S  ID  + +   +  + V L Y + N  + +  +G K +    +T  ++ + L  +FS
Sbjct: 13  ASATIDLWTDNYIKRNFLGVTLHYHE-NNELRDLILGLKSLDFERSTAENIYKKLKAIFS 71

Query: 194 KYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCFVHQLQLAIVAMAKKHD 253
           ++ +      +   D  +N+                    I+C  H L   +    ++  
Sbjct: 72  QFNVEDLSSIKFVTDRGANVVKSLANN-----------IRINCSSHLLSNVLENSFEETP 120

Query: 254 QINSFFNVIANVINVDGPLCKR 275
           ++N       N++        +
Sbjct: 121 ELNMPILACKNIVKYFKKANLQ 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	275
d2bw3a2	447	Transposase Hermes, catalytic domain {House fly (M	99.9

>d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Hermes transposase-like
domain: Transposase Hermes, catalytic domain
species: House fly (Musca domestica) [TaxId: 7370]

Probab=99.90  E-value=1.5e-24  Score=197.73  Aligned_cols=138  Identities=17%  Similarity=0.159  Sum_probs=124.4

Q ss_pred             HHHHHHHcccceEEEEccCCC-CCCcceeeEEEEeeccCCceeeeeeceeccc--ccccchHHHHHHHHHHhcCCCccce
Q 039123          126 NVIIRDVGDALFSILIDESRD-ASTKEQMVVALRYADKNGYVFERFIGFKHVT--CTTTISLKEALDQLFSKYGLSISRL  202 (275)
Q Consensus       126 ~~i~~~i~~~~fsi~~Dettd-~s~~~ql~i~vryvd~~~~i~e~fL~~~~~~--~~tae~l~~~i~~~l~~~~l~~~~~  202 (275)
                      ++|++.+....+||++|+||+ .++.+||+|++||++ ++.+++++|+|.+++  ++||++|++.|.++|++|||+++++
T Consensus         2 ~~~k~~~~~~~~s~~~D~Wts~~~~~~~l~v~~~yi~-~~~~~~~~L~~~~~~~~~~tg~~i~~~l~~~l~~~~i~~~~~   80 (447)
T d2bw3a2           2 REIKSAVEKDGASATIDLWTDNYIKRNFLGVTLHYHE-NNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSS   80 (447)
T ss_dssp             HHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEEEE-TTEEEEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTT
T ss_pred             hhHHHHHHcCCEEEEEEeecCCCCCeEEEEEEEEEEE-CCceeEEEEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCcceE
Confidence            346666677789999999987 557899999999998 588999999999885  3899999999999999999999999


Q ss_pred             eeeeecCcccccccchhHHHHHHhhCCceEEEcchhhHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCCCCCC
Q 039123          203 HRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCFVHQLQLAIVAMAKKHDQINSFFNVIANVINVDGPLCKR  275 (275)
Q Consensus       203 ~~~~~Dgas~m~g~~~gv~~~l~~~~p~~~~v~C~aH~LnL~~~~~~~~~~~~~~~~~~~~~i~~~f~~S~kr  275 (275)
                      ++++||||++|.|.           .+...++||++|.|||++.++++.++.+.++++.++++++||+.|++|
T Consensus        81 ~~~~~D~a~n~~~~-----------~~~~~~i~C~aH~Lnl~v~d~~~~~~~~~~~~~~~~~i~~~~~~s~~~  142 (447)
T d2bw3a2          81 IKFVTDRGANVVKS-----------LANNIRINCSSHLLSNVLENSFEETPELNMPILACKNIVKYFKKANLQ  142 (447)
T ss_dssp             CEEEECCCHHHHHH-----------TTTSEEEECHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCG
T ss_pred             EEEEcCCcHhhHHH-----------hhccccccchhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHhHHHH
Confidence            99999999999754           455789999999999999999999999999999999999999999875