Citrus Sinensis ID: 039124
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 259 | 2.2.26 [Sep-21-2011] | |||||||
| P92976 | 329 | Strictosidine synthase 3 | no | no | 0.594 | 0.468 | 0.388 | 7e-26 | |
| P94111 | 335 | Strictosidine synthase 1 | no | no | 0.629 | 0.486 | 0.380 | 2e-25 | |
| P68175 | 344 | Strictosidine synthase OS | N/A | no | 0.633 | 0.476 | 0.358 | 4e-25 | |
| P68174 | 342 | Strictosidine synthase (F | N/A | no | 0.633 | 0.479 | 0.358 | 4e-25 | |
| P18417 | 352 | Strictosidine synthase OS | N/A | no | 0.633 | 0.465 | 0.32 | 2e-21 | |
| B5X3B2 | 416 | Adipocyte plasma membrane | N/A | no | 0.629 | 0.391 | 0.347 | 1e-20 | |
| Q803F5 | 415 | Adipocyte plasma membrane | yes | no | 0.617 | 0.385 | 0.351 | 9e-20 | |
| Q7TP48 | 376 | Adipocyte plasma membrane | yes | no | 0.652 | 0.449 | 0.340 | 3e-17 | |
| Q9HDC9 | 416 | Adipocyte plasma membrane | yes | no | 0.652 | 0.406 | 0.345 | 3e-17 | |
| Q3T0E5 | 412 | Adipocyte plasma membrane | yes | no | 0.652 | 0.410 | 0.345 | 3e-17 |
| >sp|P92976|STS3_ARATH Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 93/162 (57%), Gaps = 8/162 (4%)
Query: 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQW 140
GPE+ FD G+G YTG+ G+I++++ + G+ FA +T++ LC + +T ++
Sbjct: 40 GPEAFAFDSTGKGFYTGVTGGKILKYLPKK-GYVDFAQITNSSKSSLCDGALGTTNVEK- 97
Query: 141 KHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDV 200
CGRP G+ FN TGDLY+ADA GL V+ +GGLA +A GGKP LF + LDV
Sbjct: 98 -----CGRPAGIAFNTKTGDLYVADAALGLHVIPRRGGLAKKIADSVGGKPFLFLDGLDV 152
Query: 201 H-KNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTK 241
G ++FT S + D + +STG+ +YDP K
Sbjct: 153 DPTTGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKK 194
|
Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 4EC: .EC: 3EC: .EC: 3EC: .EC: 2 |
| >sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 97/171 (56%), Gaps = 8/171 (4%)
Query: 72 KLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARG 131
KL + GPE+ FD G+G YTG++ G+I++++ E G+ FA +T + + C
Sbjct: 29 KLPVPETRSGPEAFAFDSTGKGFYTGVSGGKILKYLPET-GYVDFAQITESSNSSWCDGT 87
Query: 132 VDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKP 191
+ + A + CGRP G+ FN+ TGDLY+ADA GL V+ GGLAT + GKP
Sbjct: 88 IGTALAGR------CGRPAGIAFNEKTGDLYVADAPLGLHVISPAGGLATKITDSVDGKP 141
Query: 192 ILFANDLDVH-KNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTK 241
F + LDV G ++FT S R++ + L ++TG+L +YDP TK
Sbjct: 142 FKFLDGLDVDPTTGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTK 192
|
Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 3 EC: . EC: 3 EC: . EC: 2 |
| >sp|P68175|STSY_RAUSE Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 91/173 (52%), Gaps = 9/173 (5%)
Query: 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQ 139
+ P S FD +G YT + DGR++++ G N G+ FA + W++ C D+
Sbjct: 41 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDA----- 95
Query: 140 WKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPI--LFAND 197
+ CGR + +N LYI D YY L VVGS+GG AT LAT G P L+A
Sbjct: 96 -EKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVT 154
Query: 198 LDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWL 250
+D + G ++FTD S Y+ I+ + TGRL++YDP TK + ++ L
Sbjct: 155 VD-QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKEL 206
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Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis. Rauvolfia serpentina (taxid: 4060) EC: 4 EC: . EC: 3 EC: . EC: 3 EC: . EC: 2 |
| >sp|P68174|STSY_RAUMA Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 91/173 (52%), Gaps = 9/173 (5%)
Query: 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQ 139
+ P S FD +G YT + DGR++++ G N G+ FA + W++ C D+
Sbjct: 39 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDA----- 93
Query: 140 WKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPI--LFAND 197
+ CGR + +N LYI D YY L VVGS+GG AT LAT G P L+A
Sbjct: 94 -EKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVT 152
Query: 198 LDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWL 250
+D + G ++FTD S Y+ I+ + TGRL++YDP TK + ++ L
Sbjct: 153 VD-QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKEL 204
|
Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis. Rauvolfia mannii (taxid: 4062) EC: 4 EC: . EC: 3 EC: . EC: 3 EC: . EC: 2 |
| >sp|P18417|STSY_CATRO Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 11/175 (6%)
Query: 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQ 139
+ P + FD +G YT + DGR++++ G N G+ FA + W++ C D
Sbjct: 45 YAPNAFTFDSTDKGFYTSVQDGRVIKYEGPNSGFTDFAYASPFWNKAFCENSTDP----- 99
Query: 140 WKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPI--LFAND 197
+ CGR + ++ +YI D +Y L VVG +GG AT LAT G P L+A
Sbjct: 100 -EKRPLCGRTYDISYDYKNSQMYIVDGHYHLCVVGKEGGYATQLATSVQGVPFKWLYAVT 158
Query: 198 LDVHKNGSIFFTDTSKRYNRVDHFF--ILLEGESTGRLLRYDPPTKSNSYCVRWL 250
+D + G ++FTD S ++ I+ + TGRL++YDP TK + ++ L
Sbjct: 159 VD-QRTGIVYFTDVSSIHDDSPEGVEEIMNTSDRTGRLMKYDPSTKETTLLLKEL 212
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Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis. Catharanthus roseus (taxid: 4058) EC: 4 EC: . EC: 3 EC: . EC: 3 EC: . EC: 2 |
| >sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 96/184 (52%), Gaps = 21/184 (11%)
Query: 75 FVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDS 134
F D++ GPES+ G YTG ADG+IV+ G+++ + AR
Sbjct: 94 FEDQLVGPESIA--NFGDLIYTGTADGKIVKIEGKSI--------------TVIARLGKP 137
Query: 135 TTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLAT---QAGGKP 191
+ E CGRPLG+R + G L++ADAY GL V G T L + GG+
Sbjct: 138 PCDGSREQEPSCGRPLGIRVGPN-GTLFVADAYLGLFKVNPVTGEVTNLVSAGQMVGGRR 196
Query: 192 ILFANDLDVHKNG-SIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWL 250
+ F NDLDV ++G ++FTD+S R+ R D+ +++E + GR+L YD TK + + L
Sbjct: 197 LSFVNDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENL 256
Query: 251 GFSK 254
F+
Sbjct: 257 RFAN 260
|
Salmo salar (taxid: 8030) |
| >sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1 | Back alignment and function description |
|---|
Score = 97.4 bits (241), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 94/182 (51%), Gaps = 22/182 (12%)
Query: 75 FVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDS 134
F + + GPESL +G YTG ADG+IV+ G N+ V + + C
Sbjct: 94 FEERLVGPESLA--NIGDVFYTGTADGKIVKIEGRNIH------VLATIGKPPCG----- 140
Query: 135 TTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLAT---QAGGKP 191
+HE CGRPLG+R + G L++ADAY GL V G L + + G+
Sbjct: 141 ----SREHEHTCGRPLGIRVGPN-GTLFVADAYLGLFEVNPVTGEVKSLVSTEKRIAGRR 195
Query: 192 ILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWL 250
+ F NDLDV ++G ++FTD+S R+ R D +++E + GR+L YD TK + + L
Sbjct: 196 LGFVNDLDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENL 255
Query: 251 GF 252
F
Sbjct: 256 RF 257
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Danio rerio (taxid: 7955) |
| >sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2 | Back alignment and function description |
|---|
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 94/191 (49%), Gaps = 22/191 (11%)
Query: 66 SRLVTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSE 125
++L + F +++ GPES+ +G +TG ADGR+V+ EN ET A S
Sbjct: 46 TKLRQAERLFENQLNGPESIV--NIGDVLFTGTADGRVVKL--ENGEIETIARFGSG--- 98
Query: 126 KLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKG---GLATP 182
K E CGRPLG+R + G L++ DAY GL V + L
Sbjct: 99 ----------PCKTRDDEPTCGRPLGIRVGPN-GTLFVVDAYKGLFEVNPQKRSVKLLLS 147
Query: 183 LATQAGGKPILFANDLDVHKNG-SIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTK 241
T GK + F NDL + ++G I+FTD+S ++ R D+ +++EG GRLL YD TK
Sbjct: 148 SETPIEGKKMSFVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTK 207
Query: 242 SNSYCVRWLGF 252
+ L F
Sbjct: 208 EVKVLLDQLQF 218
|
Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation. Rattus norvegicus (taxid: 10116) |
| >sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 95/191 (49%), Gaps = 22/191 (11%)
Query: 66 SRLVTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSE 125
++L + F +++ GPES+ +G +TG ADGR+V+ EN ET A S
Sbjct: 86 TKLRQAERLFENQLVGPESIAH--IGDVMFTGTADGRVVKL--ENGEIETIARFGSG--- 138
Query: 126 KLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVG---SKGGLATP 182
K E CGRPLG+R + G L++ADAY GL V + L
Sbjct: 139 ----------PCKTRDDEPVCGRPLGIRAGPN-GTLFVADAYKGLFEVNPWKREVKLLLS 187
Query: 183 LATQAGGKPILFANDLDVHKNG-SIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTK 241
T GK + F NDL V ++G I+FTD+S ++ R D+ +++EG GRLL YD T+
Sbjct: 188 SETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTR 247
Query: 242 SNSYCVRWLGF 252
+ L F
Sbjct: 248 EVKVLLDQLRF 258
|
Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation. Homo sapiens (taxid: 9606) |
| >sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 94/191 (49%), Gaps = 22/191 (11%)
Query: 66 SRLVTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSE 125
++L + F +++ GPES+ +G +TG ADGR+V+ EN ET A S
Sbjct: 85 TKLQQAERLFENQLVGPESIA--NIGDVMFTGTADGRVVKL--ENGEVETIARFGSG--- 137
Query: 126 KLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVG---SKGGLATP 182
K E CGRPLG+R + G L++ DAY GL V + L
Sbjct: 138 ----------PCKTRDDEPACGRPLGIRAGPN-GTLFVVDAYKGLFEVNPWKREVKLLLS 186
Query: 183 LATQAGGKPILFANDLDVHKNG-SIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTK 241
T G+ + F NDL V ++G I+FTD+S ++ R D+ +L+EG GRLL YD TK
Sbjct: 187 SETPIEGRKMSFLNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTK 246
Query: 242 SNSYCVRWLGF 252
+ L F
Sbjct: 247 EVKVLLDHLRF 257
|
Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation. Bos taurus (taxid: 9913) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 259 | ||||||
| 224095660 | 406 | predicted protein [Populus trichocarpa] | 0.972 | 0.620 | 0.781 | 1e-109 | |
| 359478139 | 406 | PREDICTED: adipocyte plasma membrane-ass | 0.972 | 0.620 | 0.773 | 1e-109 | |
| 224132774 | 406 | predicted protein [Populus trichocarpa] | 0.972 | 0.620 | 0.781 | 1e-109 | |
| 357454493 | 407 | Adipocyte plasma membrane-associated pro | 0.972 | 0.619 | 0.743 | 1e-108 | |
| 297817252 | 413 | hypothetical protein ARALYDRAFT_907457 [ | 0.972 | 0.610 | 0.729 | 1e-107 | |
| 61104883 | 414 | strictosidine synthase family protein [B | 0.972 | 0.608 | 0.726 | 1e-106 | |
| 28393615 | 414 | putative strictosidine synthase [Arabido | 0.972 | 0.608 | 0.717 | 1e-106 | |
| 15231703 | 403 | strictosidine synthase family protein [A | 0.972 | 0.625 | 0.717 | 1e-106 | |
| 449459884 | 421 | PREDICTED: adipocyte plasma membrane-ass | 0.972 | 0.598 | 0.757 | 1e-105 | |
| 356547317 | 401 | PREDICTED: adipocyte plasma membrane-ass | 0.949 | 0.613 | 0.757 | 1e-104 |
| >gi|224095660|ref|XP_002310427.1| predicted protein [Populus trichocarpa] gi|222853330|gb|EEE90877.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/252 (78%), Positives = 224/252 (88%)
Query: 1 MEKKNPLVDETLLQHPFLFVLALVLGFLIMDPLQMGPLGGHEFRPVKHDIAPYRQVMQSW 60
MEKK D TLLQHP L VLAL +GF+IMDP +MGPLG H+F+PVKHD+APY+QVM++W
Sbjct: 1 MEKKGSQRDATLLQHPLLLVLALAIGFVIMDPFKMGPLGHHDFKPVKHDLAPYKQVMENW 60
Query: 61 PRDNLSRLVTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVT 120
PRDN SRL +G LEF +EVFGPESLEFD LGRGPY GLADGR+VRWMGE+VGWETFA+V+
Sbjct: 61 PRDNKSRLGSGNLEFANEVFGPESLEFDSLGRGPYAGLADGRVVRWMGEDVGWETFALVS 120
Query: 121 SNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLA 180
+NWSEKLCARGVDSTT+KQWKHEK CGRPLGLRF+K++G+LYIADAYYGLLVVG +GGLA
Sbjct: 121 TNWSEKLCARGVDSTTSKQWKHEKLCGRPLGLRFHKESGNLYIADAYYGLLVVGPEGGLA 180
Query: 181 TPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPT 240
TPLAT G+PILFANDLD+HKNGSIFFTDTSKRY+RVDHFFILLEGESTGRLLRYDPPT
Sbjct: 181 TPLATHVRGEPILFANDLDIHKNGSIFFTDTSKRYDRVDHFFILLEGESTGRLLRYDPPT 240
Query: 241 KSNSYCVRWLGF 252
K+ + L F
Sbjct: 241 KTTHIVLDGLAF 252
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359478139|ref|XP_003632076.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/252 (77%), Positives = 223/252 (88%)
Query: 1 MEKKNPLVDETLLQHPFLFVLALVLGFLIMDPLQMGPLGGHEFRPVKHDIAPYRQVMQSW 60
MEK++PL DE LLQHP L ++ L+LGF++MDP MGP+GGHEF PVKHDIAPY++VM+ W
Sbjct: 1 MEKRSPLKDEALLQHPCLLLVVLLLGFVVMDPFHMGPIGGHEFMPVKHDIAPYKRVMEDW 60
Query: 61 PRDNLSRLVTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVT 120
PRDN SRL GKLEFVDEVFGPESLEFD GRGPYTGLADGRIVRWMG++VGWETFA+VT
Sbjct: 61 PRDNRSRLGQGKLEFVDEVFGPESLEFDIFGRGPYTGLADGRIVRWMGDSVGWETFALVT 120
Query: 121 SNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLA 180
NWSEKLCA+G+DSTT+KQWK E+ CGRPLGLRF+K+TGDLYIADAYYGLLVVG +GGLA
Sbjct: 121 PNWSEKLCAKGIDSTTSKQWKVEQRCGRPLGLRFHKETGDLYIADAYYGLLVVGPEGGLA 180
Query: 181 TPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPT 240
TPL T GKPILFANDLD+HKNGSIFFTDTSKRYNR++HFFILLEGE+TGRLLRYDPPT
Sbjct: 181 TPLVTHVQGKPILFANDLDIHKNGSIFFTDTSKRYNRMNHFFILLEGEATGRLLRYDPPT 240
Query: 241 KSNSYCVRWLGF 252
++ + L F
Sbjct: 241 RTTHLVLDGLAF 252
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132774|ref|XP_002327877.1| predicted protein [Populus trichocarpa] gi|222837286|gb|EEE75665.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/252 (78%), Positives = 222/252 (88%)
Query: 1 MEKKNPLVDETLLQHPFLFVLALVLGFLIMDPLQMGPLGGHEFRPVKHDIAPYRQVMQSW 60
MEKK D TLLQHP L VLAL + F+IMDP +MGPLG H+F+P KHD+APY+QVM++W
Sbjct: 1 MEKKGSQRDGTLLQHPLLLVLALAISFVIMDPFRMGPLGDHDFKPFKHDLAPYKQVMENW 60
Query: 61 PRDNLSRLVTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVT 120
PRDN SRL +G LEFVDEVFGPESLEFD LGRGPY GLADGR+VRWMG++VGWETFA+VT
Sbjct: 61 PRDNRSRLGSGNLEFVDEVFGPESLEFDSLGRGPYAGLADGRVVRWMGQDVGWETFALVT 120
Query: 121 SNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLA 180
+NWSEKLCARGVDSTT+KQWKHEK CGRPLGLR +K++G+LYIADAYYGLLVVG +GGLA
Sbjct: 121 TNWSEKLCARGVDSTTSKQWKHEKLCGRPLGLRLHKESGNLYIADAYYGLLVVGPEGGLA 180
Query: 181 TPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPT 240
TPLAT GG PILFANDLD+HKNGSIFFTDTSKRY+RVDHFFILLEGESTGRLLRYDPPT
Sbjct: 181 TPLATHLGGDPILFANDLDIHKNGSIFFTDTSKRYDRVDHFFILLEGESTGRLLRYDPPT 240
Query: 241 KSNSYCVRWLGF 252
K+ + L F
Sbjct: 241 KTTHVVLDGLAF 252
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357454493|ref|XP_003597527.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355486575|gb|AES67778.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/253 (74%), Positives = 214/253 (84%), Gaps = 1/253 (0%)
Query: 1 MEKKNPLVDETLLQHPFLFVLALVLGFLIMDPLQMGPLGGHEFRPVKHDIAPYRQVMQSW 60
MEKKN L DET LQ + + L L F++MDP +GPLG HEFRPVKH++APY+QVM++W
Sbjct: 1 MEKKNFLKDETFLQQHKVLAIFLFLSFVLMDPFHLGPLGEHEFRPVKHNVAPYKQVMKNW 60
Query: 61 PRDNLSRL-VTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIV 119
P+DN+SRL + GKLEF +EVFGPESLEFD +GRGPYTGLADGR+VRWMGE +GWETFA+V
Sbjct: 61 PKDNMSRLGLHGKLEFENEVFGPESLEFDNMGRGPYTGLADGRVVRWMGEQLGWETFAVV 120
Query: 120 TSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGL 179
TSNW+EK C RG DSTT KQWKHEK CGRPLGLRF+K++GDLYIADAYYGLL+VG GGL
Sbjct: 121 TSNWTEKTCMRGNDSTTPKQWKHEKTCGRPLGLRFDKESGDLYIADAYYGLLMVGPNGGL 180
Query: 180 ATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPP 239
ATPLAT GKPILFANDLD+HKNGSIFFTDTS RYNRV HFFILLEGE TGRLLRYDPP
Sbjct: 181 ATPLATHVEGKPILFANDLDIHKNGSIFFTDTSTRYNRVAHFFILLEGEGTGRLLRYDPP 240
Query: 240 TKSNSYCVRWLGF 252
TK+ + L F
Sbjct: 241 TKTTHVVLDGLVF 253
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297817252|ref|XP_002876509.1| hypothetical protein ARALYDRAFT_907457 [Arabidopsis lyrata subsp. lyrata] gi|297322347|gb|EFH52768.1| hypothetical protein ARALYDRAFT_907457 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/255 (72%), Positives = 214/255 (83%), Gaps = 3/255 (1%)
Query: 1 MEKKNPL--VDETLLQHPFLFVLALVLGFLIMDPLQMGPLGGHEFRPVKHDIAPYRQVMQ 58
MEKK D + HP L ++AL + F+ +DP M P+GG EF+PVKH++APY+QVM+
Sbjct: 1 MEKKGQYGTYDSLVTHHPILCIIALSVIFIAIDPFHMSPIGGREFKPVKHEVAPYKQVME 60
Query: 59 SWPRDNLSRLVT-GKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFA 117
SWPRDNLSRL GKLEFVD+VFGPESLEFD LGRGPYTGLADGR+VRWMGE +GWETF+
Sbjct: 61 SWPRDNLSRLGNHGKLEFVDQVFGPESLEFDSLGRGPYTGLADGRVVRWMGEAIGWETFS 120
Query: 118 IVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKG 177
+VTS WSEK C RGVDSTT KQWKHEK CGRPLGLRF+K+TG+LYIADAYYGLLVVG +G
Sbjct: 121 VVTSKWSEKACVRGVDSTTNKQWKHEKLCGRPLGLRFHKETGNLYIADAYYGLLVVGPEG 180
Query: 178 GLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYD 237
G+ATPLAT GKPILFANDLD+H+NGSIFFTDTSKRY+R +HFFILLEGESTGRLLRYD
Sbjct: 181 GIATPLATHVEGKPILFANDLDIHRNGSIFFTDTSKRYDRANHFFILLEGESTGRLLRYD 240
Query: 238 PPTKSNSYCVRWLGF 252
PPTK+ + L F
Sbjct: 241 PPTKTTHIVLEGLAF 255
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|61104883|gb|AAX38236.1| strictosidine synthase family protein [Brassica napus] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/256 (72%), Positives = 214/256 (83%), Gaps = 4/256 (1%)
Query: 1 MEKK---NPLVDETLLQHPFLFVLALVLGFLIMDPLQMGPLGGHEFRPVKHDIAPYRQVM 57
MEKK + D L HP L ++AL + F+ +DP M P+GG EF+P+KH++APY+QVM
Sbjct: 1 MEKKGQQHSTHDSFLTHHPVLCIIALSVVFIAIDPFHMSPIGGREFKPMKHEVAPYKQVM 60
Query: 58 QSWPRDNLSRL-VTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETF 116
++WPRDNLS+L GKLEFVD VFGPESLEFDGLGRGPYTGLADGR+VRWMGE VGWETF
Sbjct: 61 ENWPRDNLSQLGQHGKLEFVDRVFGPESLEFDGLGRGPYTGLADGRVVRWMGEAVGWETF 120
Query: 117 AIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSK 176
++VTS WSE+ CARGVDSTT KQWKHEK CGRPLGLRF K+TG+LYIADAYYGLLVVG +
Sbjct: 121 SVVTSKWSEEACARGVDSTTNKQWKHEKLCGRPLGLRFVKETGNLYIADAYYGLLVVGPE 180
Query: 177 GGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRY 236
GG+ATPLAT GKPILFANDLD+H+NGSIFFTDTSKRY+R +HFFILLEGESTGRLLRY
Sbjct: 181 GGVATPLATHVEGKPILFANDLDIHRNGSIFFTDTSKRYDRANHFFILLEGESTGRLLRY 240
Query: 237 DPPTKSNSYCVRWLGF 252
DPPTK+ L F
Sbjct: 241 DPPTKTTHIVQEGLAF 256
|
Source: Brassica napus Species: Brassica napus Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|28393615|gb|AAO42227.1| putative strictosidine synthase [Arabidopsis thaliana] gi|28973541|gb|AAO64095.1| putative strictosidine synthase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/255 (71%), Positives = 214/255 (83%), Gaps = 3/255 (1%)
Query: 1 MEKK--NPLVDETLLQHPFLFVLALVLGFLIMDPLQMGPLGGHEFRPVKHDIAPYRQVMQ 58
MEKK + + + HP L ++AL + F+ +DP M P+GG EF+PVKH++APY++VM
Sbjct: 1 MEKKGQHGTYESMMTHHPILCIIALSVLFIAIDPFHMSPIGGREFKPVKHEVAPYKEVMG 60
Query: 59 SWPRDNLSRLVT-GKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFA 117
SWPRDNLSRL GKLEFVD+VFGPESLEFD LGRGPYTGLADGR+VRWMGE +GWETF+
Sbjct: 61 SWPRDNLSRLGNHGKLEFVDQVFGPESLEFDSLGRGPYTGLADGRVVRWMGEAIGWETFS 120
Query: 118 IVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKG 177
+VTS WSE+ C RGVDSTT KQWKHEK CGRPLGLRF+K+TG+LYIADAYYGLLVVG +G
Sbjct: 121 VVTSKWSEEACVRGVDSTTNKQWKHEKLCGRPLGLRFHKETGNLYIADAYYGLLVVGPEG 180
Query: 178 GLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYD 237
G+ATPLAT GKPILFANDLD+H+NGSIFFTDTSKRY+R +HFFILLEGESTGRLLRYD
Sbjct: 181 GIATPLATHVEGKPILFANDLDIHRNGSIFFTDTSKRYDRANHFFILLEGESTGRLLRYD 240
Query: 238 PPTKSNSYCVRWLGF 252
PPTK+ + L F
Sbjct: 241 PPTKTTHIVLEGLAF 255
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231703|ref|NP_191512.1| strictosidine synthase family protein [Arabidopsis thaliana] gi|42572733|ref|NP_974462.1| strictosidine synthase family protein [Arabidopsis thaliana] gi|6996289|emb|CAB75450.1| putative protein [Arabidopsis thaliana] gi|332646415|gb|AEE79936.1| strictosidine synthase family protein [Arabidopsis thaliana] gi|332646416|gb|AEE79937.1| strictosidine synthase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/255 (71%), Positives = 214/255 (83%), Gaps = 3/255 (1%)
Query: 1 MEKK--NPLVDETLLQHPFLFVLALVLGFLIMDPLQMGPLGGHEFRPVKHDIAPYRQVMQ 58
MEKK + + + HP L ++AL + F+ +DP M P+GG EF+PVKH++APY++VM
Sbjct: 1 MEKKGQHGTYESMMTHHPILCIIALSVLFIAIDPFHMSPIGGREFKPVKHEVAPYKEVMG 60
Query: 59 SWPRDNLSRLVT-GKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFA 117
SWPRDNLSRL GKLEFVD+VFGPESLEFD LGRGPYTGLADGR+VRWMGE +GWETF+
Sbjct: 61 SWPRDNLSRLGNHGKLEFVDQVFGPESLEFDSLGRGPYTGLADGRVVRWMGEAIGWETFS 120
Query: 118 IVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKG 177
+VTS WSE+ C RGVDSTT KQWKHEK CGRPLGLRF+K+TG+LYIADAYYGLLVVG +G
Sbjct: 121 VVTSKWSEEACVRGVDSTTNKQWKHEKLCGRPLGLRFHKETGNLYIADAYYGLLVVGPEG 180
Query: 178 GLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYD 237
G+ATPLAT GKPILFANDLD+H+NGSIFFTDTSKRY+R +HFFILLEGESTGRLLRYD
Sbjct: 181 GIATPLATHVEGKPILFANDLDIHRNGSIFFTDTSKRYDRANHFFILLEGESTGRLLRYD 240
Query: 238 PPTKSNSYCVRWLGF 252
PPTK+ + L F
Sbjct: 241 PPTKTTHIVLEGLAF 255
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459884|ref|XP_004147676.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Cucumis sativus] gi|449498879|ref|XP_004160659.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/252 (75%), Positives = 215/252 (85%)
Query: 1 MEKKNPLVDETLLQHPFLFVLALVLGFLIMDPLQMGPLGGHEFRPVKHDIAPYRQVMQSW 60
M+KK + DE+LLQHP LF+L L LGF++MDP +M P+GG++FRPVKHDIAPY QVM W
Sbjct: 1 MQKKGIVKDESLLQHPVLFLLVLGLGFVVMDPFEMSPVGGYDFRPVKHDIAPYSQVMGHW 60
Query: 61 PRDNLSRLVTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVT 120
P+DN SRL G LEF DEVFGPESLEFD LGRGPYTGLADGRIVRWMGE +GWETFAIVT
Sbjct: 61 PKDNESRLGLGNLEFEDEVFGPESLEFDALGRGPYTGLADGRIVRWMGEEIGWETFAIVT 120
Query: 121 SNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLA 180
NWSEK+CA+GVDSTTAKQWK+EK CGRPLGLRF K +G+LYIADAYYGLLVVG +GG A
Sbjct: 121 PNWSEKVCAKGVDSTTAKQWKNEKKCGRPLGLRFEKQSGNLYIADAYYGLLVVGPQGGTA 180
Query: 181 TPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPT 240
TPLAT G PILFANDLD+H NGSIFFTDTSKRYNRV+HFFILLEGE++GRLLRYDP T
Sbjct: 181 TPLATHVEGTPILFANDLDIHNNGSIFFTDTSKRYNRVEHFFILLEGEASGRLLRYDPST 240
Query: 241 KSNSYCVRWLGF 252
K+ + L F
Sbjct: 241 KTTHVVLNGLAF 252
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547317|ref|XP_003542061.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/247 (75%), Positives = 210/247 (85%), Gaps = 1/247 (0%)
Query: 7 LVDETLLQHPFLFVLALVLGFLIMDPLQMGPLGGHEFRPVKHDIAPYRQVMQSWPRDNLS 66
+ DET LQHPF+ + LVLG ++MDP +GP+ HEFRPVKH IAPY QVM++WPRDN+S
Sbjct: 1 MKDETFLQHPFVLAVVLVLGLVMMDPFHLGPVSEHEFRPVKHSIAPYHQVMKNWPRDNMS 60
Query: 67 RL-VTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSE 125
RL + GK EF ++VFGPESLEFD +GRGPYTGLADGR+VRWMGE +GWETFA+VTSNW+E
Sbjct: 61 RLALHGKSEFKNQVFGPESLEFDHMGRGPYTGLADGRVVRWMGEQLGWETFAVVTSNWTE 120
Query: 126 KLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLAT 185
KLC RG DSTTAKQWKHEK CGRPLGLRF+K GDLYIADAYYGLLVVG GGLAT LAT
Sbjct: 121 KLCFRGNDSTTAKQWKHEKTCGRPLGLRFDKVNGDLYIADAYYGLLVVGPNGGLATSLAT 180
Query: 186 QAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSY 245
GKPILFANDLD+HKNGSIFFTDTSKRYNRV HFFILLEGE+TGRLLRYDPPTK+
Sbjct: 181 HVEGKPILFANDLDIHKNGSIFFTDTSKRYNRVAHFFILLEGEATGRLLRYDPPTKTTHV 240
Query: 246 CVRWLGF 252
+ L F
Sbjct: 241 VLDGLAF 247
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 259 | ||||||
| TAIR|locus:2097488 | 403 | LAP3 "LESS ADHERENT POLLEN 3" | 0.972 | 0.625 | 0.701 | 1.7e-98 | |
| TAIR|locus:504956439 | 395 | AT5G22020 [Arabidopsis thalian | 0.779 | 0.511 | 0.478 | 7.9e-46 | |
| TAIR|locus:2201841 | 390 | SSL3 "strictosidine synthase-l | 0.833 | 0.553 | 0.433 | 2.2e-43 | |
| TAIR|locus:2080575 | 374 | AT3G57030 [Arabidopsis thalian | 0.637 | 0.441 | 0.505 | 2e-40 | |
| TAIR|locus:2080565 | 370 | AT3G57020 [Arabidopsis thalian | 0.586 | 0.410 | 0.451 | 6.7e-33 | |
| TAIR|locus:2040312 | 376 | SSL2 "strictosidine synthase-l | 0.579 | 0.398 | 0.462 | 8.5e-33 | |
| TAIR|locus:2080660 | 376 | AT3G57010 [Arabidopsis thalian | 0.586 | 0.404 | 0.445 | 1.6e-31 | |
| TAIR|locus:2040297 | 394 | SSL1 "strictosidine synthase-l | 0.552 | 0.362 | 0.438 | 2.7e-29 | |
| TAIR|locus:2031511 | 329 | SS3 "strictosidine synthase 3" | 0.594 | 0.468 | 0.401 | 9.4e-27 | |
| TAIR|locus:2031486 | 335 | SS2 "strictosidine synthase 2" | 0.629 | 0.486 | 0.380 | 1.9e-26 |
| TAIR|locus:2097488 LAP3 "LESS ADHERENT POLLEN 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
Identities = 179/255 (70%), Positives = 205/255 (80%)
Query: 1 MEKKNP--LVDETLLQHPXXXXXXXXXXXXIMDPLQMGPLGGHEFRPVKHDIAPYRQVMQ 58
MEKK + + HP +DP M P+GG EF+PVKH++APY++VM
Sbjct: 1 MEKKGQHGTYESMMTHHPILCIIALSVLFIAIDPFHMSPIGGREFKPVKHEVAPYKEVMG 60
Query: 59 SWPRDNLSRLVT-GKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFA 117
SWPRDNLSRL GKLEFVD+VFGPESLEFD LGRGPYTGLADGR+VRWMGE +GWETF+
Sbjct: 61 SWPRDNLSRLGNHGKLEFVDQVFGPESLEFDSLGRGPYTGLADGRVVRWMGEAIGWETFS 120
Query: 118 IVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKG 177
+VTS WSE+ C RGVDSTT KQWKHEK CGRPLGLRF+K+TG+LYIADAYYGLLVVG +G
Sbjct: 121 VVTSKWSEEACVRGVDSTTNKQWKHEKLCGRPLGLRFHKETGNLYIADAYYGLLVVGPEG 180
Query: 178 GLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYD 237
G+ATPLAT GKPILFANDLD+H+NGSIFFTDTSKRY+R +HFFILLEGESTGRLLRYD
Sbjct: 181 GIATPLATHVEGKPILFANDLDIHRNGSIFFTDTSKRYDRANHFFILLEGESTGRLLRYD 240
Query: 238 PPTKSNSYCVRWLGF 252
PPTK+ + L F
Sbjct: 241 PPTKTTHIVLEGLAF 255
|
|
| TAIR|locus:504956439 AT5G22020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 99/207 (47%), Positives = 133/207 (64%)
Query: 46 VKHDIAPYRQVMQSWPRDNLSRLVTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVR 105
V H++ R W RD+ + L K+ F +++ GPES+ FD LGRGPYTG+ADGR++
Sbjct: 40 VSHEVISPRPDEVPWERDSQNSLQKSKILFFNQIQGPESVAFDSLGRGPYTGVADGRVLF 99
Query: 106 WMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIAD 165
W GE W FA +SN SE +C + ++E CGRPLGLRF+K TGDLYIAD
Sbjct: 100 WDGEK--WIDFAYTSSNRSE-IC--DPKPSALSYLRNEHICGRPLGLRFDKRTGDLYIAD 154
Query: 166 AYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILL 225
AY GLL VG +GGLATPL T+A G P+ F NDLD+ +G+++FTD+S Y R + ++
Sbjct: 155 AYMGLLKVGPEGGLATPLVTEAEGVPLGFTNDLDIADDGTVYFTDSSISYQRRNFLQLVF 214
Query: 226 EGESTGRLLRYDPPTKSNSYCVRWLGF 252
G++TGR+L+YDP K V L F
Sbjct: 215 SGDNTGRVLKYDPVAKKAVVLVSNLQF 241
|
|
| TAIR|locus:2201841 SSL3 "strictosidine synthase-like 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 97/224 (43%), Positives = 135/224 (60%)
Query: 30 MDPLQMGPLGGH-EFRPVKHDIAPYRQVMQSWPRDNLSRLVTGKLEFVDEVFGPESLEFD 88
+DP + +F+ K D+ P + + R NL L ++ F++EV GPES+ FD
Sbjct: 19 IDPFSHSSISKFPDFKTYKIDMPPLSSLPKERDRQNL--LQNSEIRFLNEVQGPESIAFD 76
Query: 89 GLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGR 148
GRGPYTG+ADGRI+ W G W FA ++N SE LC + K E CGR
Sbjct: 77 PQGRGPYTGVADGRILFWNGTR--WTDFAYTSNNRSE-LC--DPKPSLLDYLKDEDICGR 131
Query: 149 PLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFF 208
PLGLRF+K GDLYIADAY G++ VG +GGLAT + +A G P+ F NDLD+ G+++F
Sbjct: 132 PLGLRFDKKNGDLYIADAYLGIMKVGPEGGLATSVTNEADGVPLRFTNDLDIDDEGNVYF 191
Query: 209 TDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWLGF 252
TD+S + R +++ GE +GR+L+Y+P TK + VR L F
Sbjct: 192 TDSSSFFQRRKFMLLIVSGEDSGRVLKYNPKTKETTTLVRNLQF 235
|
|
| TAIR|locus:2080575 AT3G57030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 88/174 (50%), Positives = 114/174 (65%)
Query: 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQW 140
GPES+ FD G GPY G++DGRI++W GE +GW FA +SN E CAR A +
Sbjct: 56 GPESIAFDPAGEGPYVGVSDGRILKWRGEPLGWSDFAHTSSNRQE--CARPF----APEL 109
Query: 141 KHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDV 200
+H CGRPLGLRF+K TGDLYIADAY+GLLVVG GGLA PL T+A G+P F NDLD+
Sbjct: 110 EHV--CGRPLGLRFDKKTGDLYIADAYFGLLVVGPAGGLAKPLVTEAEGQPFRFTNDLDI 167
Query: 201 HKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWLGFS 253
+ I+FTDTS R+ R +L + TGR ++YD +K + ++ L F+
Sbjct: 168 DEQEDVIYFTDTSARFQRRQFLAAVLNVDKTGRFIKYDRSSKKATVLLQGLAFA 221
|
|
| TAIR|locus:2080565 AT3G57020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 74/164 (45%), Positives = 102/164 (62%)
Query: 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAK 138
V GPES+EFD G GPY + DGRI++W G+++GW FA + + RG S T
Sbjct: 51 VAGPESIEFDPKGEGPYAAVVDGRILKWRGDDLGWVDFAYTSPH-------RGNCSKT-- 101
Query: 139 QWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDL 198
+ CGRPLGL F K TGDLYI D Y GL+ VG +GGLA + +A G+ ++FAN
Sbjct: 102 --EVVPTCGRPLGLTFEKKTGDLYICDGYLGLMKVGPEGGLAELIVDEAEGRKVMFANQG 159
Query: 199 DVHKNGSIF-FTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTK 241
D+ + +F F D+S +Y+ D FF+ + GE +GR++RYD TK
Sbjct: 160 DIDEEEDVFYFNDSSDKYHFRDVFFVAVSGERSGRVIRYDKKTK 203
|
|
| TAIR|locus:2040312 SSL2 "strictosidine synthase-like 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 73/158 (46%), Positives = 98/158 (62%)
Query: 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQW 140
GPES FD G GPYTGL+DGRIV+W+ W FA+ TS G + Q
Sbjct: 51 GPESFVFDFFGDGPYTGLSDGRIVKWLANESRWIDFAVTTS------AREGCEGPHEHQ- 103
Query: 141 KHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDV 200
+ E CGRPLGL F+K TGDLYIADAY GLL VG GG+AT + + + + F N LD+
Sbjct: 104 RTEHVCGRPLGLAFDKSTGDLYIADAYMGLLKVGPTGGVATQVLPRELNEALRFTNSLDI 163
Query: 201 H-KNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYD 237
+ + G ++FTD+S Y R ++ ++ G+ TGRL++YD
Sbjct: 164 NPRTGVVYFTDSSSVYQRRNYIGAMMSGDKTGRLMKYD 201
|
|
| TAIR|locus:2080660 AT3G57010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 73/164 (44%), Positives = 98/164 (59%)
Query: 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAK 138
V GPESLEFD G GPY G+ DGRI++W GE +GW FA TS + + V +
Sbjct: 52 VDGPESLEFDPQGEGPYVGVTDGRILKWRGEELGWVDFAY-TSPHRDNCSSHEVVPS--- 107
Query: 139 QWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDL 198
CGRPLGL F + TGDLYI D Y+G++ VG +GGLA + +A G+ ++FAN
Sbjct: 108 -------CGRPLGLSFERKTGDLYICDGYFGVMKVGPEGGLAELVVDEAEGRKVMFANQG 160
Query: 199 DVHKNGSIF-FTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTK 241
D+ + IF F D+S Y+ D F++ L G GR++RYD K
Sbjct: 161 DIDEEEDIFYFNDSSDTYHFRDVFYVSLSGTKVGRVIRYDMKKK 204
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| TAIR|locus:2040297 SSL1 "strictosidine synthase-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 68/155 (43%), Positives = 92/155 (59%)
Query: 88 DGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCG 147
D G GPY G+ DGRI++W GE++GW FA S+ K C+ K E CG
Sbjct: 85 DPRGEGPYVGVTDGRILKWSGEDLGWIEFAY--SSPHRKNCS---------SHKVEPACG 133
Query: 148 RPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDV-HKNGSI 206
RPLGL F K +GDLY D Y G++ VG KGGLA + + G+ ++FAN +D+ + +I
Sbjct: 134 RPLGLSFEKKSGDLYFCDGYLGVMKVGPKGGLAEKVVDEVEGQKVMFANQMDIDEEEDAI 193
Query: 207 FFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTK 241
+F D+S Y+ D F+ L GE TGR +RYD TK
Sbjct: 194 YFNDSSDTYHFGDVFYAFLCGEKTGRAIRYDKKTK 228
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| TAIR|locus:2031511 SS3 "strictosidine synthase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 65/162 (40%), Positives = 93/162 (57%)
Query: 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQW 140
GPE+ FD G+G YTG+ G+I++++ + G+ FA +T++ LC + +T
Sbjct: 40 GPEAFAFDSTGKGFYTGVTGGKILKYLPKK-GYVDFAQITNSSKSSLCDGALGTTNV--- 95
Query: 141 KHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDV 200
EK CGRP G+ FN TGDLY+ADA GL V+ +GGLA +A GGKP LF + LDV
Sbjct: 96 --EK-CGRPAGIAFNTKTGDLYVADAALGLHVIPRRGGLAKKIADSVGGKPFLFLDGLDV 152
Query: 201 HKN-GSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTK 241
G ++FT S + D + +STG+ +YDP K
Sbjct: 153 DPTTGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKK 194
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| TAIR|locus:2031486 SS2 "strictosidine synthase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 65/171 (38%), Positives = 97/171 (56%)
Query: 72 KLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARG 131
KL + GPE+ FD G+G YTG++ G+I++++ E G+ FA +T + + C
Sbjct: 29 KLPVPETRSGPEAFAFDSTGKGFYTGVSGGKILKYLPET-GYVDFAQITESSNSSWCDGT 87
Query: 132 VDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKP 191
+ + A + CGRP G+ FN+ TGDLY+ADA GL V+ GGLAT + GKP
Sbjct: 88 IGTALAGR------CGRPAGIAFNEKTGDLYVADAPLGLHVISPAGGLATKITDSVDGKP 141
Query: 192 ILFANDLDVHKN-GSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTK 241
F + LDV G ++FT S R++ + L ++TG+L +YDP TK
Sbjct: 142 FKFLDGLDVDPTTGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTK 192
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pg.C_LG_VII000152 | hypothetical protein (406 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.00280038 | hypothetical protein (145 aa) | • | 0.504 | |||||||
 | eugene3.85300001 | hypothetical protein (161 aa) | • | 0.470 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 259 | |||
| pfam03088 | 89 | pfam03088, Str_synth, Strictosidine synthase | 4e-11 | |
| COG3386 | 307 | COG3386, COG3386, Gluconolactonase [Carbohydrate t | 0.001 |
| >gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 4e-11
Identities = 25/48 (52%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 196 NDLDVHKN-GSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKS 242
N LDV G ++FTD+S RY+R F +LEG+ TGRL++YDP TK
Sbjct: 1 NALDVDPETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKV 48
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Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89 |
| >gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.001
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 176 KGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLR 235
GG T LA G P+ ND V +G I+F D Y + E TG L R
Sbjct: 94 TGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMG--YFDLGKS----EERPTGSLYR 147
Query: 236 YDP 238
DP
Sbjct: 148 VDP 150
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Length = 307 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 259 | |||
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 100.0 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 99.84 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.83 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.76 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 99.49 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.33 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.25 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.14 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 99.09 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 98.77 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.69 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 98.49 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 98.46 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.44 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 98.37 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.36 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 98.34 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.26 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.26 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 98.25 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.18 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 98.18 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 98.12 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 98.08 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.03 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.93 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 97.89 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.75 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.73 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 97.72 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.72 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 97.51 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 97.39 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 97.35 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 97.34 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 97.27 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.09 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 96.99 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.95 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 96.94 | |
| COG3211 | 616 | PhoX Predicted phosphatase [General function predi | 96.84 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 96.8 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.68 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 96.62 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 96.61 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 96.53 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 96.53 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 96.49 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.44 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 96.39 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 96.32 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 96.31 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.26 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 96.26 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 96.22 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 96.22 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 96.18 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 96.05 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 96.02 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 95.95 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 95.85 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 95.85 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 95.82 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 95.8 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 95.8 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 95.79 | |
| PTZ00421 | 493 | coronin; Provisional | 95.78 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 95.73 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 95.71 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 95.68 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.66 | |
| PF14339 | 236 | DUF4394: Domain of unknown function (DUF4394) | 95.62 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 95.53 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 95.52 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 95.51 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 95.51 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 95.5 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.47 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 95.32 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 95.32 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 95.25 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 95.21 | |
| PF14517 | 229 | Tachylectin: Tachylectin; PDB: 1TL2_A. | 95.07 | |
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 95.0 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 94.97 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 94.93 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 94.92 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 94.87 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 94.79 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 94.71 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 94.66 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 94.54 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 94.44 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 94.37 | |
| COG3211 | 616 | PhoX Predicted phosphatase [General function predi | 94.22 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 94.19 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 94.0 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 93.74 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 93.64 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 93.63 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 93.56 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 93.53 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 93.51 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 93.41 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 93.19 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 92.99 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 92.97 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 92.96 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 92.7 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 92.48 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 92.33 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 92.18 | |
| PTZ00420 | 568 | coronin; Provisional | 91.15 | |
| PF06739 | 38 | SBBP: Beta-propeller repeat; InterPro: IPR010620 T | 91.12 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 90.87 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 90.75 | |
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 90.69 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 90.52 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 90.01 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 89.46 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 89.3 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 89.29 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 89.08 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 88.86 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 88.85 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 88.63 | |
| PTZ00421 | 493 | coronin; Provisional | 88.5 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 88.41 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 88.41 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 87.82 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 87.62 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 87.06 | |
| TIGR03803 | 34 | Gloeo_Verruco Gloeo_Verruco repeat. This model des | 86.83 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 86.83 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 86.81 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 86.73 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 86.48 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 85.82 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 85.48 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 85.4 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 85.24 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 84.58 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 84.29 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 84.24 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 84.14 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 83.91 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 83.51 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 83.33 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 83.01 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 82.43 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 82.15 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 81.87 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 81.25 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 80.79 | |
| PF07494 | 24 | Reg_prop: Two component regulator propeller; Inter | 80.62 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 80.2 |
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=327.22 Aligned_cols=221 Identities=43% Similarity=0.756 Sum_probs=177.4
Q ss_pred eeehHHHHHHHHHHHHhcCCCCCCCCCCcccceecccCCCccccccCCCCCCCcccCCCeEEccCCCCCceeEEEcCCCC
Q 039124 13 LQHPFLFVLALVLGFLIMDPLQMGPLGGHEFRPVKHDIAPYRQVMQSWPRDNLSRLVTGKLEFVDEVFGPESLEFDGLGR 92 (259)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~n~~L~~~e~l~~~~l~gPE~ia~D~~G~ 92 (259)
.++.++++.+.+++++.++++..+.+...+..+.. . +..+.++.+..+.+.|||++++|+.|.
T Consensus 4 ~~~~~~~i~~~~~~~~~l~~l~~~~~~~~~~~~~~--~---------------~~~~~~~l~~~~~~~g~E~~~fd~~~~ 66 (376)
T KOG1520|consen 4 SRFLFLFIFLFLAVIILLYLLSGSSIAGSPDDRLF--S---------------KLPLLGKLIPNNHLTGPESLLFDPQGG 66 (376)
T ss_pred chhhhHHHHHHHHHHHhhhccCcccccCCchhccc--C---------------CCCcccccccccccCChhhheecccCC
Confidence 34566778888888888888777765533221110 0 112233444555567777777777776
Q ss_pred EEEEEcCCCeEEEEeCCCccEEEEEEe--ecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEEeCCCce
Q 039124 93 GPYTGLADGRIVRWMGENVGWETFAIV--TSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGL 170 (259)
Q Consensus 93 ~~yt~~~~G~I~ri~~~~~~~~~fa~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~VaD~~~Gl 170 (259)
..|++..+|+|++|.+...+|..|+.+ +.+++. .|+ + ..+..++.||||+||||+.++|+|||||||+||
T Consensus 67 gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~-~~~-~------~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL 138 (376)
T KOG1520|consen 67 GPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQ-CCD-P------GSFETEPLCGRPLGIRFDKKGGDLYVADAYLGL 138 (376)
T ss_pred CceEEEECCceEEEeccCceEEEEEeccccccccc-cCC-C------cceecccccCCcceEEeccCCCeEEEEecceee
Confidence 677777777777777765557777776 555543 333 1 236778999999999999986799999999999
Q ss_pred EEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEEecCCC
Q 039124 171 LVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWL 250 (259)
Q Consensus 171 ~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L 250 (259)
++|++++++.+.++++++|+|++|.||++|+++|.|||||||++|+++|++.+++|++++|||+||||.|++++||+++|
T Consensus 139 ~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L 218 (376)
T KOG1520|consen 139 LKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGL 218 (376)
T ss_pred EEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEE
Q 039124 251 GFSKWSTI 258 (259)
Q Consensus 251 ~~pNGval 258 (259)
+||||+++
T Consensus 219 ~F~NGlaL 226 (376)
T KOG1520|consen 219 YFPNGLAL 226 (376)
T ss_pred cccccccC
Confidence 99999986
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.8e-22 Score=147.30 Aligned_cols=63 Identities=49% Similarity=0.831 Sum_probs=52.2
Q ss_pred ccEEEcCC-CcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 196 NDLDVHKN-GSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 196 Ndl~vd~d-G~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
|||+|+++ |.|||||+|++|++++|+++++|++++|||++|||+||++++|+++|+|||||++
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVal 64 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVAL 64 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEE
Confidence 89999999 9999999999999999999999999999999999999999999999999999997
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=158.66 Aligned_cols=138 Identities=29% Similarity=0.422 Sum_probs=110.4
Q ss_pred ceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 82 PESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 82 PE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
||+++||+ +|++||+++.+++|+|+++++.....+ . ...|.|++++..+|.
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~------------------------~----~~~~~G~~~~~~~g~ 53 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI------------------------D----LPGPNGMAFDRPDGR 53 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE------------------------E----SSSEEEEEEECTTSE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE------------------------e----cCCCceEEEEccCCE
Confidence 89999997 899999999999999999987632111 1 122999999932599
Q ss_pred EEEEeCCCceEEEECCCCeEEEeeecCCCC-CccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCC
Q 039124 161 LYIADAYYGLLVVGSKGGLATPLATQAGGK-PILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPP 239 (259)
Q Consensus 161 L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~-pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~ 239 (259)
||||+. .++..+|+++++.+.++....+. ++.+|||+++|++|+|||||+...... ....|+|||++++
T Consensus 54 l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~ 123 (246)
T PF08450_consen 54 LYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS---------GIDPGSVYRIDPD 123 (246)
T ss_dssp EEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT---------CGGSEEEEEEETT
T ss_pred EEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccc---------cccccceEEECCC
Confidence 999986 56777799999988888765454 899999999999999999999753211 1111999999999
Q ss_pred CCcEEEecCCCCCcceeEE
Q 039124 240 TKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 240 tg~~~vl~~~L~~pNGval 258 (259)
++++++.+++.+||||+|
T Consensus 124 -~~~~~~~~~~~~pNGi~~ 141 (246)
T PF08450_consen 124 -GKVTVVADGLGFPNGIAF 141 (246)
T ss_dssp -SEEEEEEEEESSEEEEEE
T ss_pred -CeEEEEecCcccccceEE
Confidence 999999999999999997
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-17 Score=150.63 Aligned_cols=146 Identities=23% Similarity=0.199 Sum_probs=109.5
Q ss_pred CCCCCceeEEEcCCC-CEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 77 DEVFGPESLEFDGLG-RGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 77 ~~l~gPE~ia~D~~G-~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
-+..-.|+++|+++. .++|+++.+++|+|+++..+....|. ...+.+.|+.++
T Consensus 22 ~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~--------------------------~p~~~~~~~~~d 75 (307)
T COG3386 22 KGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP--------------------------SPGGFSSGALID 75 (307)
T ss_pred cccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE--------------------------CCCCcccceeec
Confidence 345567778888854 58999999999999999754333331 223447889999
Q ss_pred CCCCcEEEEeCCCceEEEECCCCeE-EEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 156 KDTGDLYIADAYYGLLVVGSKGGLA-TPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 156 ~~~G~L~VaD~~~Gl~~v~~~gg~~-~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
. .|.|++|+.. ++.++++.+.. +.++...++.+.+++||+.++++|++||||+++ +. ...-+.++.|+||
T Consensus 76 ~-~g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~ly 146 (307)
T COG3386 76 A-GGRLIACEHG--VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLY 146 (307)
T ss_pred C-CCeEEEEccc--cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEE
Confidence 8 4899888754 55555454444 778877889999999999999999999999984 11 2233568899999
Q ss_pred EEeCCCCcEEEecCC-CCCcceeEE
Q 039124 235 RYDPPTKSNSYCVRW-LGFSKWSTI 258 (259)
Q Consensus 235 rydp~tg~~~vl~~~-L~~pNGval 258 (259)
||||. +.++.++.+ +.+||||||
T Consensus 147 r~~p~-g~~~~l~~~~~~~~NGla~ 170 (307)
T COG3386 147 RVDPD-GGVVRLLDDDLTIPNGLAF 170 (307)
T ss_pred EEcCC-CCEEEeecCcEEecCceEE
Confidence 99997 555555555 999999997
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-12 Score=122.08 Aligned_cols=160 Identities=18% Similarity=0.138 Sum_probs=108.2
Q ss_pred eEEcc-CCCCCceeEEEcCCCCEEEEEc-----------CCC-eEEEEeCC---CccEEEEEEeecCccccccccCcccc
Q 039124 72 KLEFV-DEVFGPESLEFDGLGRGPYTGL-----------ADG-RIVRWMGE---NVGWETFAIVTSNWSEKLCARGVDST 135 (259)
Q Consensus 72 e~l~~-~~l~gPE~ia~D~~G~~~yt~~-----------~~G-~I~ri~~~---~~~~~~fa~~~~~~~~~~~~g~~~~~ 135 (259)
+++.. ..+..|.+++||++|++|++.. ..+ +|++++.. +. ....
T Consensus 5 ~l~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~-~d~~------------------- 64 (367)
T TIGR02604 5 TLFAAEPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGK-YDKS------------------- 64 (367)
T ss_pred EEEECCCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCC-ccee-------------------
Confidence 34443 3689999999999999655553 234 89888652 22 1000
Q ss_pred ccccccccCcCCCcceEEEeCCCCcEEEEeCCCceEEE-ECCC-----CeEEEeeecCCCC---CccccccEEEcCCCcE
Q 039124 136 TAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVV-GSKG-----GLATPLATQAGGK---PILFANDLDVHKNGSI 206 (259)
Q Consensus 136 ~~~~~~~~~~~grPlGl~~d~~~G~L~VaD~~~Gl~~v-~~~g-----g~~~~l~~~~~g~---pl~~~Ndl~vd~dG~I 206 (259)
..+......|.||++.+ +| |||++.. .|+++ +.++ ++.+.+++..... +...+|++++++||.|
T Consensus 65 ----~vfa~~l~~p~Gi~~~~-~G-lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~L 137 (367)
T TIGR02604 65 ----NVFAEELSMVTGLAVAV-GG-VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWL 137 (367)
T ss_pred ----EEeecCCCCccceeEec-CC-EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCE
Confidence 01123356799999998 47 9999754 58878 4332 2456677655443 4677999999999999
Q ss_pred EEecCCCCC--CcccceeeeeccCCCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 207 FFTDTSKRY--NRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 207 yfTDss~~~--~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
||++.+... ..........+....|+++||||++++.++++.++..|||+++
T Consensus 138 Yv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~ 191 (367)
T TIGR02604 138 YFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSV 191 (367)
T ss_pred EEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceE
Confidence 999986421 1111111112234568999999999999999999999999987
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.2e-11 Score=104.33 Aligned_cols=134 Identities=20% Similarity=0.268 Sum_probs=90.1
Q ss_pred CCCCceeEEEcCCCCEEEEEcCC--------CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 78 EVFGPESLEFDGLGRGPYTGLAD--------GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~~~--------G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
...+|.++++|++|++|+++... |+|+|+++++. .... ......|
T Consensus 84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~--------------------------~~~~~~p 136 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGK-VTVV--------------------------ADGLGFP 136 (246)
T ss_dssp CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSE-EEEE--------------------------EEEESSE
T ss_pred ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCe-EEEE--------------------------ecCcccc
Confidence 58899999999999977777643 78999999843 2211 1124679
Q ss_pred ceEEEeCCCCcEEEEeCCCc-eEEEECC--CCeE---EEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceee
Q 039124 150 LGLRFNKDTGDLYIADAYYG-LLVVGSK--GGLA---TPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFI 223 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~G-l~~v~~~--gg~~---~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~ 223 (259)
+||+|++++..|||+|+..+ |++++.+ ++++ +.+.. ..+. ..+|+++++|++|+||+++..
T Consensus 137 NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~-~g~pDG~~vD~~G~l~va~~~----------- 203 (246)
T PF08450_consen 137 NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID-FPGG-PGYPDGLAVDSDGNLWVADWG----------- 203 (246)
T ss_dssp EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE--SSS-SCEEEEEEEBTTS-EEEEEET-----------
T ss_pred cceEECCcchheeecccccceeEEEeccccccceeeeeeEEE-cCCC-CcCCCcceEcCCCCEEEEEcC-----------
Confidence 99999996336899999876 8888764 4422 23332 2222 247999999999999999854
Q ss_pred eeccCCCceEEEEeCCCCcEE-EecCCCCCcceeEE
Q 039124 224 LLEGESTGRLLRYDPPTKSNS-YCVRWLGFSKWSTI 258 (259)
Q Consensus 224 ~~e~~~~GrL~rydp~tg~~~-vl~~~L~~pNGval 258 (259)
.|++++|||+ |+.. .+.-....|..+||
T Consensus 204 ------~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 204 ------GGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp ------TTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ------CCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 4699999998 6643 34333445555554
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-10 Score=118.17 Aligned_cols=153 Identities=16% Similarity=0.096 Sum_probs=105.0
Q ss_pred cCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEe-ecCccccccccCccccccccccccCcCCCcceEE
Q 039124 76 VDEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIV-TSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLR 153 (259)
Q Consensus 76 ~~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~ 153 (259)
...+..|.++++|+ +|++|+++..+++|++++.++. ...+... .... .-+|. ..+..+.+|.||+
T Consensus 564 ~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G---~~dG~---------~~~a~f~~P~GIa 630 (1057)
T PLN02919 564 TSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEG---LRDGS---------FEDATFNRPQGLA 630 (1057)
T ss_pred cccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcC---CCCCc---------hhccccCCCcEEE
Confidence 34689999999998 5777788889999999999876 3322211 1000 00111 1134578899999
Q ss_pred EeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeec------CCC------CCccccccEEEcC-CCcEEEecCCCCCCccc
Q 039124 154 FNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQ------AGG------KPILFANDLDVHK-NGSIFFTDTSKRYNRVD 219 (259)
Q Consensus 154 ~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~------~~g------~pl~~~Ndl~vd~-dG~IyfTDss~~~~~~~ 219 (259)
++++++.|||||.+++ |.++|..++.+++++.. .+| ..++.|.++++++ +|++|++|+..
T Consensus 631 vd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~------ 704 (1057)
T PLN02919 631 YNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ------ 704 (1057)
T ss_pred EeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC------
Confidence 9985445899999876 77889998888777542 111 2378899999999 78899999864
Q ss_pred ceeeeeccCCCceEEEEeCCCCcEEEec---------------CCCCCcceeEE
Q 039124 220 HFFILLEGESTGRLLRYDPPTKSNSYCV---------------RWLGFSKWSTI 258 (259)
Q Consensus 220 ~~~~~~e~~~~GrL~rydp~tg~~~vl~---------------~~L~~pNGval 258 (259)
+++++||+.++.+.++. ..+..|+||++
T Consensus 705 -----------~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIav 747 (1057)
T PLN02919 705 -----------HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISL 747 (1057)
T ss_pred -----------CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEE
Confidence 35666776665554432 13567888875
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-09 Score=111.68 Aligned_cols=152 Identities=17% Similarity=0.144 Sum_probs=102.7
Q ss_pred CCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 79 VFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 79 l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
+..|.++++|+ +|.+|+++..+++|++++..+.....|+..... . ...+. .........|.||+++++
T Consensus 682 ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~--~-~~~g~--------~~~~~~~~~P~GIavspd 750 (1057)
T PLN02919 682 LNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE--R-NLNGS--------SGTSTSFAQPSGISLSPD 750 (1057)
T ss_pred cCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc--c-cCCCC--------ccccccccCccEEEEeCC
Confidence 56899999999 667666777889999999876544444321100 0 00000 011234567999999996
Q ss_pred CCcEEEEeCCCc-eEEEECCCCeEEEeeec-------------CCC----CCccccccEEEcCCCcEEEecCCCCCCccc
Q 039124 158 TGDLYIADAYYG-LLVVGSKGGLATPLATQ-------------AGG----KPILFANDLDVHKNGSIFFTDTSKRYNRVD 219 (259)
Q Consensus 158 ~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~-------------~~g----~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~ 219 (259)
++.|||||...+ |.++|.+++..+.++.. .+| ..+..|.+++++++|+||++|+.+
T Consensus 751 G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N------ 824 (1057)
T PLN02919 751 LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN------ 824 (1057)
T ss_pred CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC------
Confidence 334999999865 88899887655444321 011 236689999999999999999753
Q ss_pred ceeeeeccCCCceEEEEeCCCCcEEEecC--------------CCCCcceeEE
Q 039124 220 HFFILLEGESTGRLLRYDPPTKSNSYCVR--------------WLGFSKWSTI 258 (259)
Q Consensus 220 ~~~~~~e~~~~GrL~rydp~tg~~~vl~~--------------~L~~pNGval 258 (259)
+++.+||++++++..++. .+..|+||++
T Consensus 825 -----------~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIav 866 (1057)
T PLN02919 825 -----------HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLAL 866 (1057)
T ss_pred -----------CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEE
Confidence 488889988887765542 3457888875
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=94.92 Aligned_cols=119 Identities=17% Similarity=0.075 Sum_probs=92.7
Q ss_pred CeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 71 GKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
....-...-.+|..++.++||.++|++...|.|-++++..+..+++. -..+.+|.
T Consensus 53 ~~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~yp-------------------------Lg~Ga~Ph 107 (353)
T COG4257 53 SAEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYP-------------------------LGSGASPH 107 (353)
T ss_pred cceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEe-------------------------cCCCCCCc
Confidence 34444556789999999999999999999999999999876443321 13367899
Q ss_pred eEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCC
Q 039124 151 GLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYN 216 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~ 216 (259)
|+.++++ |..||+|...+|.++|+++.+++.+--..+- +-.-.|-..+|++|++|||..+..|.
T Consensus 108 giv~gpd-g~~Witd~~~aI~R~dpkt~evt~f~lp~~~-a~~nlet~vfD~~G~lWFt~q~G~yG 171 (353)
T COG4257 108 GIVVGPD-GSAWITDTGLAIGRLDPKTLEVTRFPLPLEH-ADANLETAVFDPWGNLWFTGQIGAYG 171 (353)
T ss_pred eEEECCC-CCeeEecCcceeEEecCcccceEEeeccccc-CCCcccceeeCCCccEEEeeccccce
Confidence 9999994 9999999999999999998887766422111 12246889999999999999876554
|
|
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-07 Score=87.28 Aligned_cols=209 Identities=18% Similarity=0.165 Sum_probs=127.3
Q ss_pred ehHHHHHHHHHHHHhcCCCCCCCCCCc-ccceecccCCCccccccCCCCCCCcccCCCeEEccCCCCCceeEEEcCCCCE
Q 039124 15 HPFLFVLALVLGFLIMDPLQMGPLGGH-EFRPVKHDIAPYRQVMQSWPRDNLSRLVTGKLEFVDEVFGPESLEFDGLGRG 93 (259)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~n~~L~~~e~l~~~~l~gPE~ia~D~~G~~ 93 (259)
...+..+++.++++.+++..+.+.... .+++.... +.+.+|+.++.+|.+..+....||++.+..+..+
T Consensus 9 ~~i~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il 78 (376)
T KOG1520|consen 9 LFIFLFLAVIILLYLLSGSSIAGSPDDRLFSKLPLL----------GKLIPNNHLTGPESLLFDPQGGGPYTGVVDGRIL 78 (376)
T ss_pred HHHHHHHHHHHhhhccCcccccCCchhcccCCCCcc----------cccccccccCChhhheecccCCCceEEEECCceE
Confidence 345556666666666666666555434 35555432 4567889888888888887776666666434446
Q ss_pred EEEEcCCCeEEEEeCCCccEE-EEEEeecCccccccccCcc-------------------------ccccccccccCcCC
Q 039124 94 PYTGLADGRIVRWMGENVGWE-TFAIVTSNWSEKLCARGVD-------------------------STTAKQWKHEKWCG 147 (259)
Q Consensus 94 ~yt~~~~G~I~ri~~~~~~~~-~fa~~~~~~~~~~~~g~~~-------------------------~~~~~~~~~~~~~g 147 (259)
+|++..+|+|.+.+....... .-.-+.....++.|.-|.. .-.+... ..+..|
T Consensus 79 ~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l-~~~~~G 157 (376)
T KOG1520|consen 79 KYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELL-ADEAEG 157 (376)
T ss_pred EEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecceeeEEECCCCCcceec-cccccC
Confidence 899999999998876211000 0000000001223431000 0000001 123455
Q ss_pred Cc----ceEEEeCCCCcEEEEeCCC-----------------c-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc
Q 039124 148 RP----LGLRFNKDTGDLYIADAYY-----------------G-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS 205 (259)
Q Consensus 148 rP----lGl~~d~~~G~L~VaD~~~-----------------G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~ 205 (259)
+| +++.+++ +|.+|..|+.. | ++++|+.++..++|.+ .+.|||++++.+|+.
T Consensus 158 ~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld-----~L~F~NGlaLS~d~s 231 (376)
T KOG1520|consen 158 KPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLD-----GLYFPNGLALSPDGS 231 (376)
T ss_pred eeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhh-----cccccccccCCCCCC
Confidence 55 4888998 69999998642 2 7788888877666654 378999999999998
Q ss_pred -EEEecCCCCCCcccceeeeeccCCCceEEEEeC---CCCcEEEecCCCC-CcceeE
Q 039124 206 -IFFTDTSKRYNRVDHFFILLEGESTGRLLRYDP---PTKSNSYCVRWLG-FSKWST 257 (259)
Q Consensus 206 -IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp---~tg~~~vl~~~L~-~pNGva 257 (259)
+.|++++ ..|+.||-. +-|+.++.++||. ||.-|.
T Consensus 232 fvl~~Et~-----------------~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR 271 (376)
T KOG1520|consen 232 FVLVAETT-----------------TARIKRYWIKGPKAGTSEVFAEGLPGYPDNIR 271 (376)
T ss_pred EEEEEeec-----------------cceeeeeEecCCccCchhhHhhcCCCCCccee
Confidence 6677664 347777764 3455688888874 776654
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.5e-07 Score=81.40 Aligned_cols=123 Identities=20% Similarity=0.218 Sum_probs=81.1
Q ss_pred CCCCceeEEEcCCCCEEEEEcC-----------CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcC
Q 039124 78 EVFGPESLEFDGLGRGPYTGLA-----------DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWC 146 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~~-----------~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 146 (259)
+...|.+..+|++|++|+++.. .|.|+|+++.+. .+.. ++ .-.
T Consensus 109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-~~~l----------~~---------------~~~ 162 (307)
T COG3386 109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-VVRL----------LD---------------DDL 162 (307)
T ss_pred CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-EEEe----------ec---------------CcE
Confidence 4688999999999995555544 367999998655 2221 11 113
Q ss_pred CCcceEEEeCCCCcEEEEeCCCc-eEEEECC--CCe---EE--EeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcc
Q 039124 147 GRPLGLRFNKDTGDLYIADAYYG-LLVVGSK--GGL---AT--PLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRV 218 (259)
Q Consensus 147 grPlGl~~d~~~G~L~VaD~~~G-l~~v~~~--gg~---~~--~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~ 218 (259)
..|+||+|++++..||++|...+ |++++.+ ++. .. ...+..+ ..|+++++|.+|+||..-.
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~----G~PDG~~vDadG~lw~~a~------- 231 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEP----GLPDGMAVDADGNLWVAAV------- 231 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCC----CCCCceEEeCCCCEEEecc-------
Confidence 46999999996349999999865 7888643 221 11 1112222 3799999999999997321
Q ss_pred cceeeeeccCCCceEEEEeCCCCcEEEe
Q 039124 219 DHFFILLEGESTGRLLRYDPPTKSNSYC 246 (259)
Q Consensus 219 ~~~~~~~e~~~~GrL~rydp~tg~~~vl 246 (259)
...++|.+|+|+.+...++
T Consensus 232 ---------~~g~~v~~~~pdG~l~~~i 250 (307)
T COG3386 232 ---------WGGGRVVRFNPDGKLLGEI 250 (307)
T ss_pred ---------cCCceEEEECCCCcEEEEE
Confidence 1124899999984344443
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4e-06 Score=74.73 Aligned_cols=133 Identities=13% Similarity=0.086 Sum_probs=95.7
Q ss_pred cCCCeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCC
Q 039124 68 LVTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCG 147 (259)
Q Consensus 68 L~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g 147 (259)
--++++.-+|.-..|.+|+++++|..++|+... .|.|++++....++|..+. ++..+
T Consensus 92 tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~----------------------~~a~~ 148 (353)
T COG4257 92 TGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPL----------------------EHADA 148 (353)
T ss_pred CCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeeccc----------------------ccCCC
Confidence 345788888888999999999999988888776 8999999877677775431 12223
Q ss_pred CcceEEEeCCCCcEEEEeCCCce-EEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeec
Q 039124 148 RPLGLRFNKDTGDLYIADAYYGL-LVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLE 226 (259)
Q Consensus 148 rPlGl~~d~~~G~L~VaD~~~Gl-~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e 226 (259)
.-.-..||+. |+||.... .|. =++||.++.++++-.. .| ..|+++++.+||.+|++.-...
T Consensus 149 nlet~vfD~~-G~lWFt~q-~G~yGrLdPa~~~i~vfpaP-qG---~gpyGi~atpdGsvwyaslagn------------ 210 (353)
T COG4257 149 NLETAVFDPW-GNLWFTGQ-IGAYGRLDPARNVISVFPAP-QG---GGPYGICATPDGSVWYASLAGN------------ 210 (353)
T ss_pred cccceeeCCC-ccEEEeec-cccceecCcccCceeeeccC-CC---CCCcceEECCCCcEEEEecccc------------
Confidence 3346789995 99998753 332 2889998877766433 33 3699999999999999964322
Q ss_pred cCCCceEEEEeCCCCcEEEe
Q 039124 227 GESTGRLLRYDPPTKSNSYC 246 (259)
Q Consensus 227 ~~~~GrL~rydp~tg~~~vl 246 (259)
.|-|+||.++..+++
T Consensus 211 -----aiaridp~~~~aev~ 225 (353)
T COG4257 211 -----AIARIDPFAGHAEVV 225 (353)
T ss_pred -----ceEEcccccCCccee
Confidence 466667766644444
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.7e-06 Score=78.43 Aligned_cols=156 Identities=19% Similarity=0.138 Sum_probs=92.2
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC-
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD- 157 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~- 157 (259)
|..|-+++|.++|+ +|+....|+|++++.++.....++.. . + +. ...-+..+|++++++
T Consensus 1 L~~P~~~a~~pdG~-l~v~e~~G~i~~~~~~g~~~~~v~~~-~---~-v~--------------~~~~~gllgia~~p~f 60 (331)
T PF07995_consen 1 LNNPRSMAFLPDGR-LLVAERSGRIWVVDKDGSLKTPVADL-P---E-VF--------------ADGERGLLGIAFHPDF 60 (331)
T ss_dssp ESSEEEEEEETTSC-EEEEETTTEEEEEETTTEECEEEEE--T---T-TB--------------TSTTBSEEEEEE-TTC
T ss_pred CCCceEEEEeCCCc-EEEEeCCceEEEEeCCCcCcceeccc-c---c-cc--------------ccccCCcccceecccc
Confidence 46799999999998 55566699999999666521222111 0 1 11 112335799999982
Q ss_pred --CCcEEEEeCCC---------ceEEEECCCC-----eEEEeeecCCC--CCccccccEEEcCCCcEEEecCCCCCCccc
Q 039124 158 --TGDLYIADAYY---------GLLVVGSKGG-----LATPLATQAGG--KPILFANDLDVHKNGSIFFTDTSKRYNRVD 219 (259)
Q Consensus 158 --~G~L~VaD~~~---------Gl~~v~~~gg-----~~~~l~~~~~g--~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~ 219 (259)
++.|||+-... .|.++..+.+ ..+.++..... ...+....|++++||.||++-.+..- .+
T Consensus 61 ~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~ 138 (331)
T PF07995_consen 61 ASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DD 138 (331)
T ss_dssp CCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GG
T ss_pred CCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--cc
Confidence 48999975532 3555543322 13334433222 34567788999999999998665432 11
Q ss_pred ceeeeeccCCCceEEEEeCCCC-------------cEEEecCCCCCcceeEE
Q 039124 220 HFFILLEGESTGRLLRYDPPTK-------------SNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 220 ~~~~~~e~~~~GrL~rydp~tg-------------~~~vl~~~L~~pNGval 258 (259)
..+. .....|.++|+|++.. ..++.+.||.-|-|++|
T Consensus 139 ~~~~--~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~ 188 (331)
T PF07995_consen 139 NAQD--PNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAF 188 (331)
T ss_dssp GGCS--TTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEE
T ss_pred cccc--cccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEE
Confidence 1111 1356799999998733 35788888888888876
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.7e-05 Score=76.06 Aligned_cols=168 Identities=15% Similarity=0.045 Sum_probs=101.2
Q ss_pred CeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 71 GKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
.|.+.. .|..|-+++|.++|+++++.-..|+|++++.++....... ..+ + + .....-+.++
T Consensus 22 ~~~va~-GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~-~l~---~-v-------------~~~~ge~GLl 82 (454)
T TIGR03606 22 KKVLLS-GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVF-TLP---E-I-------------VNDAQHNGLL 82 (454)
T ss_pred EEEEEC-CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeee-cCC---c-e-------------eccCCCCcee
Confidence 455555 4999999999999996555555799999987654211111 000 0 0 0111245689
Q ss_pred eEEEeCC------CCcEEEEeC----------CCceEEEECC--CC---eEEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 151 GLRFNKD------TGDLYIADA----------YYGLLVVGSK--GG---LATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 151 Gl~~d~~------~G~L~VaD~----------~~Gl~~v~~~--gg---~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
||+++++ ++.|||+-+ ...|.++..+ +. ..+.+.........++-..|++++||.||||
T Consensus 83 glal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs 162 (454)
T TIGR03606 83 GLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYT 162 (454)
T ss_pred eEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEE
Confidence 9999853 357999732 2346665432 21 1234444443334567778999999999997
Q ss_pred cCCCCCC------cccceee-----e----eccCCCceEEEEeCCCCc------------EEEecCCCCCcceeEE
Q 039124 210 DTSKRYN------RVDHFFI-----L----LEGESTGRLLRYDPPTKS------------NSYCVRWLGFSKWSTI 258 (259)
Q Consensus 210 Dss~~~~------~~~~~~~-----~----~e~~~~GrL~rydp~tg~------------~~vl~~~L~~pNGval 258 (259)
--..... ...-.+. . -.....|.++|+|++ |+ -++.+-|+.-|-|++|
T Consensus 163 ~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~D-GsiP~dNPf~~g~~~eIyA~G~RNp~Gla~ 237 (454)
T TIGR03606 163 IGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLD-GSIPKDNPSINGVVSHIFTYGHRNPQGLAF 237 (454)
T ss_pred ECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCC-CCCCCCCCccCCCcceEEEEeccccceeEE
Confidence 6554210 0000000 0 012467999999998 54 3677778888888876
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.1e-06 Score=63.51 Aligned_cols=68 Identities=28% Similarity=0.432 Sum_probs=51.1
Q ss_pred ceEEEeCCCCcEEEEeCC-----------------Cc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEec
Q 039124 150 LGLRFNKDTGDLYIADAY-----------------YG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTD 210 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~-----------------~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTD 210 (259)
+++.+++++|.+|++|+. .| |++.||.+++.+++.+. +.||||+++++|+. +.|++
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-----L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-----LYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE-----ESSEEEEEE-TTSSEEEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC-----CCccCeEEEcCCCCEEEEEe
Confidence 367888855999999974 13 99999999998888764 77999999999998 88998
Q ss_pred CCCCCCcccceeeeeccCCCceEEEEeCC
Q 039124 211 TSKRYNRVDHFFILLEGESTGRLLRYDPP 239 (259)
Q Consensus 211 ss~~~~~~~~~~~~~e~~~~GrL~rydp~ 239 (259)
+.. .|++||-.+
T Consensus 76 t~~-----------------~Ri~rywl~ 87 (89)
T PF03088_consen 76 TGR-----------------YRILRYWLK 87 (89)
T ss_dssp GGG-----------------TEEEEEESS
T ss_pred ccC-----------------ceEEEEEEe
Confidence 763 389998764
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.4e-05 Score=72.25 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=97.9
Q ss_pred cCCCeEEccCCCCCceeEEEcCCCCEEEEEc-CCCeEEEEeCC--CccEEEEEEeecCccccccccCccccccccccccC
Q 039124 68 LVTGKLEFVDEVFGPESLEFDGLGRGPYTGL-ADGRIVRWMGE--NVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEK 144 (259)
Q Consensus 68 L~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~-~~G~I~ri~~~--~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~ 144 (259)
|+....+-...-.||..++|+++|+.+|+.. .++.|..++.+ ...++....... .. ....
T Consensus 180 l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~------~~-----------~~~~ 242 (345)
T PF10282_consen 180 LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST------LP-----------EGFT 242 (345)
T ss_dssp EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES------CE-----------TTSC
T ss_pred EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeee------cc-----------cccc
Confidence 4333334445568999999999998888764 46777766544 332333221110 00 0001
Q ss_pred cCCCcceEEEeCCCCcEEEEeCCCc---eEEEECCCCeEEEeeec-CCCCCccccccEEEcCCCc-EEEecCCCCCCccc
Q 039124 145 WCGRPLGLRFNKDTGDLYIADAYYG---LLVVGSKGGLATPLATQ-AGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVD 219 (259)
Q Consensus 145 ~~grPlGl~~d~~~G~L~VaD~~~G---l~~v~~~gg~~~~l~~~-~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~ 219 (259)
....|.+|+++++...|||++.... ++.+|.++|.++.+... ..| .+|.+++++++|+ +|+++..+.
T Consensus 243 ~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G---~~Pr~~~~s~~g~~l~Va~~~s~----- 314 (345)
T PF10282_consen 243 GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGG---KFPRHFAFSPDGRYLYVANQDSN----- 314 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESS---SSEEEEEE-TTSSEEEEEETTTT-----
T ss_pred ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCC---CCccEEEEeCCCCEEEEEecCCC-----
Confidence 1126889999996346899987765 67777777776655322 223 4799999999998 888876542
Q ss_pred ceeeeeccCCCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 220 HFFILLEGESTGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 220 ~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
.=.++++|++||+.+.+...+..++-+|+
T Consensus 315 ----------~v~vf~~d~~tG~l~~~~~~~~~~~p~ci 343 (345)
T PF10282_consen 315 ----------TVSVFDIDPDTGKLTPVGSSVPIPSPVCI 343 (345)
T ss_dssp ----------EEEEEEEETTTTEEEEEEEEEESSSEEEE
T ss_pred ----------eEEEEEEeCCCCcEEEecccccCCCCEEE
Confidence 12577889999998888766666666665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.8e-06 Score=75.93 Aligned_cols=111 Identities=21% Similarity=0.244 Sum_probs=75.9
Q ss_pred EccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEe-CCCc-----cEEEEEEeecCccccccccCcccccccccccc--Cc
Q 039124 74 EFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWM-GENV-----GWETFAIVTSNWSEKLCARGVDSTTAKQWKHE--KW 145 (259)
Q Consensus 74 l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~-~~~~-----~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~--~~ 145 (259)
++...+..|+++++.++| +|++. ..+|+++. .++. ..+.+. + + +... ..
T Consensus 66 vfa~~l~~p~Gi~~~~~G--lyV~~-~~~i~~~~d~~gdg~ad~~~~~l~-----------~-~--------~~~~~~~~ 122 (367)
T TIGR02604 66 VFAEELSMVTGLAVAVGG--VYVAT-PPDILFLRDKDGDDKADGEREVLL-----------S-G--------FGGQINNH 122 (367)
T ss_pred EeecCCCCccceeEecCC--EEEeC-CCeEEEEeCCCCCCCCCCccEEEE-----------E-c--------cCCCCCcc
Confidence 444558899999998777 55544 44799883 3221 111111 0 0 1100 01
Q ss_pred CCCcceEEEeCCCCcEEEEeCC--------------------CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc
Q 039124 146 CGRPLGLRFNKDTGDLYIADAY--------------------YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS 205 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~~--------------------~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~ 205 (259)
...+++++++++ |.|||++.. .+++++++++++.+.++. .++.|++++++++|+
T Consensus 123 ~~~~~~l~~gpD-G~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~-----G~rnp~Gl~~d~~G~ 196 (367)
T TIGR02604 123 HHSLNSLAWGPD-GWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH-----GFQNPYGHSVDSWGD 196 (367)
T ss_pred cccccCceECCC-CCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec-----CcCCCccceECCCCC
Confidence 244889999994 999998762 249999999988776653 367899999999999
Q ss_pred EEEecCCC
Q 039124 206 IFFTDTSK 213 (259)
Q Consensus 206 IyfTDss~ 213 (259)
+|+||...
T Consensus 197 l~~tdn~~ 204 (367)
T TIGR02604 197 VFFCDNDD 204 (367)
T ss_pred EEEEccCC
Confidence 99999853
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00011 Score=67.34 Aligned_cols=160 Identities=13% Similarity=0.166 Sum_probs=106.7
Q ss_pred CcccCCCeEEccCCCCCceeEEEcCCCCEEEEEcC-CCeEEEE--eCCCccEEEEEEeecCccccccccCcccccccccc
Q 039124 65 LSRLVTGKLEFVDEVFGPESLEFDGLGRGPYTGLA-DGRIVRW--MGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWK 141 (259)
Q Consensus 65 n~~L~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~-~G~I~ri--~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~ 141 (259)
..+|+.++....-.-.||.-|+|.++|+..|+-.. +++|..+ ++..+.++...... + .|. ..
T Consensus 176 dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~-------t------lP~-dF- 240 (346)
T COG2706 176 DGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID-------T------LPE-DF- 240 (346)
T ss_pred cCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec-------c------Ccc-cc-
Confidence 44677766666666799999999999999898654 6776655 44333333322110 1 010 01
Q ss_pred ccCcCCCcceEEEeCCCCcEEEEeCCCc---eEEEECCCCeEEEeeec-CCCCCccccccEEEcCCCc-EEEecCCCCCC
Q 039124 142 HEKWCGRPLGLRFNKDTGDLYIADAYYG---LLVVGSKGGLATPLATQ-AGGKPILFANDLDVHKNGS-IFFTDTSKRYN 216 (259)
Q Consensus 142 ~~~~~grPlGl~~d~~~G~L~VaD~~~G---l~~v~~~gg~~~~l~~~-~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~ 216 (259)
.....--.|++.++..-||++|.+.. +++|++.+|+++.+... .+| .+|.|..+++.|+ ++++.-.
T Consensus 241 --~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg---~~PR~F~i~~~g~~Liaa~q~---- 311 (346)
T COG2706 241 --TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEG---QFPRDFNINPSGRFLIAANQK---- 311 (346)
T ss_pred --CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCC---cCCccceeCCCCCEEEEEccC----
Confidence 11112246788885335688886653 79999999976655432 333 4899999999998 5555432
Q ss_pred cccceeeeeccCCCceEEEEeCCCCcEEEecCCCCCcceeEEC
Q 039124 217 RVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWLGFSKWSTII 259 (259)
Q Consensus 217 ~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L~~pNGval~ 259 (259)
..+=.+|+.|++||+.+.+.....-|..+|+.
T Consensus 312 -----------sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~ 343 (346)
T COG2706 312 -----------SDNITVFERDKETGRLTLLGRYAVVPEPVCVK 343 (346)
T ss_pred -----------CCcEEEEEEcCCCceEEecccccCCCCcEEEE
Confidence 22337999999999999999999999999873
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00012 Score=66.69 Aligned_cols=144 Identities=13% Similarity=0.121 Sum_probs=86.4
Q ss_pred CCceeEEEcCCCCEEEEEcC-CCeEEEEeCC--CccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 80 FGPESLEFDGLGRGPYTGLA-DGRIVRWMGE--NVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~-~G~I~ri~~~--~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
.+|++++++++|+.+|+... +++|..|+.+ +...+...... +- + ........|.++++++
T Consensus 175 ~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~-------~~-p---------~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 175 AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD-------MM-P---------ADFSDTRWAADIHITP 237 (330)
T ss_pred CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe-------cC-C---------CcCCCCccceeEEECC
Confidence 68999999999998988876 7888776654 22222211000 00 0 0001122466899999
Q ss_pred CCCcEEEEeCCCc---eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCce
Q 039124 157 DTGDLYIADAYYG---LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGR 232 (259)
Q Consensus 157 ~~G~L~VaD~~~G---l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~Gr 232 (259)
++..|||++...+ ++.++.+++..+.+.....+ ..|.++.+++||+ +|++...+. +=.
T Consensus 238 dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~---------------~v~ 299 (330)
T PRK11028 238 DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSH---------------HIS 299 (330)
T ss_pred CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEEccCC---------------cEE
Confidence 6345899876554 45566666544333322222 4789999999997 888764321 125
Q ss_pred EEEEeCCCCcEEEecC--CCCCcceeEE
Q 039124 233 LLRYDPPTKSNSYCVR--WLGFSKWSTI 258 (259)
Q Consensus 233 L~rydp~tg~~~vl~~--~L~~pNGval 258 (259)
+|++|..+|..+.+.. --..|++|++
T Consensus 300 v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 300 VYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred EEEEcCCCCcEEEccccccCCCceEEEE
Confidence 7777777776655432 2346887775
|
|
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.8e-06 Score=80.79 Aligned_cols=145 Identities=16% Similarity=0.104 Sum_probs=105.1
Q ss_pred ccCCC--eEEccCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCcccccccccccc
Q 039124 67 RLVTG--KLEFVDEVFGPESLEFDGLG-RGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHE 143 (259)
Q Consensus 67 ~L~~~--e~l~~~~l~gPE~ia~D~~G-~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~ 143 (259)
.|..+ +.++--+|..||+||+|.-+ ++|||+....+|-.-..+|.. ... + . +
T Consensus 1053 sL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~-rkv----------L-------------f-~ 1107 (1289)
T KOG1214|consen 1053 SLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSE-RKV----------L-------------F-Y 1107 (1289)
T ss_pred cccCCCCceeecccCCCccceeeeeccceeeeeccccchhheeecCCce-eeE----------E-------------E-e
Confidence 45554 46666789999999999844 688999888887766666541 111 1 1 1
Q ss_pred CcCCCcceEEEeCCCCcEEEEeCCCc---eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCccc
Q 039124 144 KWCGRPLGLRFNKDTGDLYIADAYYG---LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVD 219 (259)
Q Consensus 144 ~~~grPlGl~~d~~~G~L~VaD~~~G---l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~ 219 (259)
...-.|.+|.+|.-.|+||-.|+..- |-+++.+|...++|+.+ -+..||+|.+|+.-+ +-|.|..++
T Consensus 1108 tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~----DigLPNGLtfdpfs~~LCWvDAGt~----- 1178 (1289)
T KOG1214|consen 1108 TDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINT----DIGLPNGLTFDPFSKLLCWVDAGTK----- 1178 (1289)
T ss_pred ecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeec----ccCCCCCceeCcccceeeEEecCCc-----
Confidence 22345889999987799999998763 77888888777777754 356899999999876 777887754
Q ss_pred ceeeeeccCCCceEEEEeCCCCcEEEecCCCCCcceeE
Q 039124 220 HFFILLEGESTGRLLRYDPPTKSNSYCVRWLGFSKWST 257 (259)
Q Consensus 220 ~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L~~pNGva 257 (259)
||-+..|+.-.-+++..+|.+|-+|.
T Consensus 1179 ------------rleC~~p~g~gRR~i~~~LqYPF~it 1204 (1289)
T KOG1214|consen 1179 ------------RLECTLPDGTGRRVIQNNLQYPFSIT 1204 (1289)
T ss_pred ------------ceeEecCCCCcchhhhhcccCceeee
Confidence 67777776334567778888887764
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00013 Score=68.59 Aligned_cols=122 Identities=16% Similarity=0.229 Sum_probs=83.9
Q ss_pred CceeEEEcCCCCEEEEEcC---CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 81 GPESLEFDGLGRGPYTGLA---DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~---~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
.|.+++++++|.-+|+... ++.|..++......... ......|.|++++++
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~--------------------------~~vG~~P~~~a~~p~ 170 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT--------------------------IPVGNTPTGVAVDPD 170 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE--------------------------EecCCCcceEEECCC
Confidence 9999999999876777665 68899999876632210 122336899999995
Q ss_pred CCc-EEEEeCCCc-eEEEECCCCeEEEeeecC-CCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceE
Q 039124 158 TGD-LYIADAYYG-LLVVGSKGGLATPLATQA-GGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRL 233 (259)
Q Consensus 158 ~G~-L~VaD~~~G-l~~v~~~gg~~~~l~~~~-~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL 233 (259)
|+ +||+|...+ |..+|.++..+.. .... .-.....|.+++++++|. +|+++..+. .+++
T Consensus 171 -g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~---------------~~~v 233 (381)
T COG3391 171 -GNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG---------------SNNV 233 (381)
T ss_pred -CCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCC---------------CceE
Confidence 66 999996555 7778877654332 2111 012456899999999998 999987642 3456
Q ss_pred EEEeCCCCcEEE
Q 039124 234 LRYDPPTKSNSY 245 (259)
Q Consensus 234 ~rydp~tg~~~v 245 (259)
.++|..++.+..
T Consensus 234 ~~id~~~~~v~~ 245 (381)
T COG3391 234 LKIDTATGNVTA 245 (381)
T ss_pred EEEeCCCceEEE
Confidence 666665554443
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.4e-05 Score=81.12 Aligned_cols=123 Identities=20% Similarity=0.228 Sum_probs=80.9
Q ss_pred CCCceeEEEcC-CCCEEEEEcCCCeEEEEeCC-C----ccEEEEEEeecC---ccccccccCccccccccccccCcCCCc
Q 039124 79 VFGPESLEFDG-LGRGPYTGLADGRIVRWMGE-N----VGWETFAIVTSN---WSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 79 l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~-~----~~~~~fa~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
...---+|+|| +|.++.++....+|||+..- + ..|+..|.++.. .-+ .|..|. .+.+.+...|
T Consensus 406 ~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~de-sCGDGa-------lA~dA~L~~P 477 (1899)
T KOG4659|consen 406 TSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADE-SCGDGA-------LAQDAQLIFP 477 (1899)
T ss_pred ccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCcccccc-ccCcch-------hcccceeccC
Confidence 34445689999 88866666778899998531 1 135655544321 001 233111 1224455579
Q ss_pred ceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeec---------------CCCCCccccccEEEcC-CCcEEEecCC
Q 039124 150 LGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQ---------------AGGKPILFANDLDVHK-NGSIFFTDTS 212 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~---------------~~g~pl~~~Ndl~vd~-dG~IyfTDss 212 (259)
.||+||+ +|.||.||+.+ |.+||.+| .++++... +....+..|.+|+|+| |+.+|+-|..
T Consensus 478 kGIa~dk-~g~lYfaD~t~-IR~iD~~g-iIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n 553 (1899)
T KOG4659|consen 478 KGIAFDK-MGNLYFADGTR-IRVIDTTG-IISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN 553 (1899)
T ss_pred CceeEcc-CCcEEEecccE-EEEeccCc-eEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc
Confidence 9999999 59999999865 88898664 56666532 1224577999999999 6779999875
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.3e-05 Score=67.63 Aligned_cols=82 Identities=16% Similarity=0.247 Sum_probs=58.8
Q ss_pred cCCCcceEEEeCCCCcEEEEeCCCc-e--EEEECCCCeEE---EeeecCC--CCCccccccEEEcCCCcEEEecCCCCCC
Q 039124 145 WCGRPLGLRFNKDTGDLYIADAYYG-L--LVVGSKGGLAT---PLATQAG--GKPILFANDLDVHKNGSIFFTDTSKRYN 216 (259)
Q Consensus 145 ~~grPlGl~~d~~~G~L~VaD~~~G-l--~~v~~~gg~~~---~l~~~~~--g~pl~~~Ndl~vd~dG~IyfTDss~~~~ 216 (259)
..+-|+||++|.+...+|+.|+-.- + +..|-.||.+. .+.+--. ...-..|++++||.+|++|++..+
T Consensus 156 ~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n---- 231 (310)
T KOG4499|consen 156 CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN---- 231 (310)
T ss_pred hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----
Confidence 3567899999987678899998653 5 55567777632 2222111 111247999999999999999865
Q ss_pred cccceeeeeccCCCceEEEEeCCCCcE
Q 039124 217 RVDHFFILLEGESTGRLLRYDPPTKSN 243 (259)
Q Consensus 217 ~~~~~~~~~e~~~~GrL~rydp~tg~~ 243 (259)
.|+++++||.||+.
T Consensus 232 -------------g~~V~~~dp~tGK~ 245 (310)
T KOG4499|consen 232 -------------GGTVQKVDPTTGKI 245 (310)
T ss_pred -------------CcEEEEECCCCCcE
Confidence 47999999999864
|
|
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.9e-05 Score=76.68 Aligned_cols=135 Identities=16% Similarity=0.140 Sum_probs=92.8
Q ss_pred CCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 80 FGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 80 ~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
.-|-+|+||= +..++||++....|-|-..+|...+++ .....+.|-||++|-..
T Consensus 1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti-------------------------~n~~L~SPEGiAVDh~~ 1079 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETI-------------------------VNSGLISPEGIAVDHIR 1079 (1289)
T ss_pred ceeeeeecccccceEEEeecCCCccccccccCCCCcee-------------------------ecccCCCccceeeeecc
Confidence 4466788885 566889999999998887776532221 12446789999999755
Q ss_pred CcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcC-CCcEEEecCCCCCCcccceeeeeccCCCceEEEE
Q 039124 159 GDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHK-NGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRY 236 (259)
Q Consensus 159 G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ry 236 (259)
-++|-+|+-.. |-.-..+|.+.++|+.+ .+.-|..|++|+ .|++|+||.... +-.+-+.
T Consensus 1080 Rn~ywtDS~lD~IevA~LdG~~rkvLf~t----dLVNPR~iv~D~~rgnLYwtDWnRe---------------nPkIets 1140 (1289)
T KOG1214|consen 1080 RNMYWTDSVLDKIEVALLDGSERKVLFYT----DLVNPRAIVVDPIRGNLYWTDWNRE---------------NPKIETS 1140 (1289)
T ss_pred ceeeeeccccchhheeecCCceeeEEEee----cccCcceEEeecccCceeecccccc---------------CCcceee
Confidence 68999998764 32224566667777653 356789999999 578999996532 1244455
Q ss_pred eCCCCcEEEec-CCCCCcceeEE
Q 039124 237 DPPTKSNSYCV-RWLGFSKWSTI 258 (259)
Q Consensus 237 dp~tg~~~vl~-~~L~~pNGval 258 (259)
+.+.+..++|+ +++..|||+.|
T Consensus 1141 ~mDG~NrRilin~DigLPNGLtf 1163 (1289)
T KOG1214|consen 1141 SMDGENRRILINTDIGLPNGLTF 1163 (1289)
T ss_pred ccCCccceEEeecccCCCCCcee
Confidence 55533445544 78999999876
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00091 Score=61.77 Aligned_cols=113 Identities=16% Similarity=0.202 Sum_probs=70.8
Q ss_pred CCCceeEEEcCCCCEEEE-EcCCCeEEEEeCCCcc--EEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 79 VFGPESLEFDGLGRGPYT-GLADGRIVRWMGENVG--WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt-~~~~G~I~ri~~~~~~--~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
-..|.++.++++|+.+|+ +....+|+.++.+... +..... .. .+.+..|..++|+
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~---------------------~~-~~~G~GPRh~~f~ 200 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS---------------------IK-VPPGSGPRHLAFS 200 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE---------------------EE-CSTTSSEEEEEE-
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec---------------------cc-cccCCCCcEEEEc
Confidence 578889999999987776 6677888887765432 221000 11 2345569999999
Q ss_pred CCCCcEEEEeCCCc---eEEEECCCCeEEEeee--cC-CC-CCccccccEEEcCCCc-EEEecCCC
Q 039124 156 KDTGDLYIADAYYG---LLVVGSKGGLATPLAT--QA-GG-KPILFANDLDVHKNGS-IFFTDTSK 213 (259)
Q Consensus 156 ~~~G~L~VaD~~~G---l~~v~~~gg~~~~l~~--~~-~g-~pl~~~Ndl~vd~dG~-IyfTDss~ 213 (259)
++...+||++...+ ++.++.+++..+.+.. .. .+ ..-+.+.+|++++||+ +|+++...
T Consensus 201 pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~ 266 (345)
T PF10282_consen 201 PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS 266 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT
T ss_pred CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC
Confidence 96447899887665 4555655665544432 11 11 1224799999999998 89998764
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.1e-05 Score=65.98 Aligned_cols=143 Identities=15% Similarity=0.054 Sum_probs=82.7
Q ss_pred eeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccC-ccccccccccccCcCCCcceEEEeCCCCc
Q 039124 83 ESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARG-VDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 83 E~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
|++.||. .+.++|+++..|+|.|++-.+...-. +. .+++ ..+ ...++.|+|-+.++.
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~r-a~---------ie~p~~ag------~ilpv~~~~q~~~v~----- 76 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYR-AK---------IEGPPSAG------FILPVEGGPQEFAVG----- 76 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhheEE-EE---------EecCccee------EEEEecCCCceEEEe-----
Confidence 6677776 67899999999999999876542111 10 0000 000 011233333222222
Q ss_pred EEEEeCCCceEEEECCCCeEEEeee---cCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEe
Q 039124 161 LYIADAYYGLLVVGSKGGLATPLAT---QAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYD 237 (259)
Q Consensus 161 L~VaD~~~Gl~~v~~~gg~~~~l~~---~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ryd 237 (259)
|-...++...|-....+.++.+ -..+..-++.||-.+||+|+.|..-++. +. +.+| .-.|.||+.-
T Consensus 77 ---~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad-~~------~~le-~~~g~Ly~~~ 145 (310)
T KOG4499|consen 77 ---CGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMAD-FG------DDLE-PIGGELYSWL 145 (310)
T ss_pred ---ecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeecc-cc------cccc-ccccEEEEec
Confidence 1122234444422222222222 1233446789999999999998877753 21 2343 3346677766
Q ss_pred CCCCcEEEecCCCCCcceeEE
Q 039124 238 PPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 238 p~tg~~~vl~~~L~~pNGval 258 (259)
+. ++++++-+.+..+||++|
T Consensus 146 ~~-h~v~~i~~~v~IsNgl~W 165 (310)
T KOG4499|consen 146 AG-HQVELIWNCVGISNGLAW 165 (310)
T ss_pred cC-CCceeeehhccCCccccc
Confidence 65 899999999999999987
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.002 Score=56.10 Aligned_cols=136 Identities=13% Similarity=0.071 Sum_probs=86.3
Q ss_pred CCceeEEEcCCCCEEEEEc-CCCeEEEEeCCCccE-EEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 80 FGPESLEFDGLGRGPYTGL-ADGRIVRWMGENVGW-ETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~-~~G~I~ri~~~~~~~-~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
..|.+++|+++|..+|++. .+|+|..|+...... ..+... .. .....+-.|.+++++++
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~-------~~------------~~~~~~~~~~~i~~s~d 217 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE-------IP------------GVHPEAVQPVGIKLTKD 217 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec-------cc------------ccccccCCccceEECCC
Confidence 4688899999998776654 589999998865421 111100 00 00012335789999985
Q ss_pred CCc-EEEEeCCC-ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 158 TGD-LYIADAYY-GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 158 ~G~-L~VaD~~~-Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
|+ +|++.... .+..+|.++++...... .+ ..+.+++++++|. ||.+.. ..|.|.
T Consensus 218 -g~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~---~~~~~~~~~~~g~~l~~~~~-----------------~~~~i~ 274 (300)
T TIGR03866 218 -GKTAFVALGPANRVAVVDAKTYEVLDYLL--VG---QRVWQLAFTPDEKYLLTTNG-----------------VSNDVS 274 (300)
T ss_pred -CCEEEEEcCCCCeEEEEECCCCcEEEEEE--eC---CCcceEEECCCCCEEEEEcC-----------------CCCeEE
Confidence 65 47765443 48888988775433221 12 2578999999997 555542 135799
Q ss_pred EEeCCCCcE-EEecCCCCCcceeEE
Q 039124 235 RYDPPTKSN-SYCVRWLGFSKWSTI 258 (259)
Q Consensus 235 rydp~tg~~-~vl~~~L~~pNGval 258 (259)
.+|..+++. +.+.- -.-||||++
T Consensus 275 v~d~~~~~~~~~~~~-~~~~~~~~~ 298 (300)
T TIGR03866 275 VIDVAALKVIKSIKV-GRLPWGVVV 298 (300)
T ss_pred EEECCCCcEEEEEEc-ccccceeEe
Confidence 999998875 34433 377899886
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00045 Score=61.36 Aligned_cols=113 Identities=18% Similarity=0.245 Sum_probs=60.1
Q ss_pred CCCceeEEEcCCCCEEEEEcCC--CeEEEEeC--CCccEEEEEEeecCccccccccCcccccccccc-ccCcCCCcceEE
Q 039124 79 VFGPESLEFDGLGRGPYTGLAD--GRIVRWMG--ENVGWETFAIVTSNWSEKLCARGVDSTTAKQWK-HEKWCGRPLGLR 153 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~--G~I~ri~~--~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~grPlGl~ 153 (259)
=.|-|+++||+.++.+|+.-.. .+|+.++. ....... ..... +. .......|-|+.
T Consensus 117 N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~--~~~~~-----------------~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 117 NKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFV--SDDQD-----------------LDDDKLFVRDLSGLS 177 (248)
T ss_dssp SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EE--EE-HH-----------------HH-HT--SS---EEE
T ss_pred CcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceee--ccccc-----------------cccccceeccccceE
Confidence 3678999999987778876543 45777765 2211111 00000 11 112234588999
Q ss_pred EeCCCCcEEEEeCC-CceEEEECCCCeEEEee--ecCCC--CCccccccEEEcCCCcEEEec
Q 039124 154 FNKDTGDLYIADAY-YGLLVVGSKGGLATPLA--TQAGG--KPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 154 ~d~~~G~L~VaD~~-~Gl~~v~~~gg~~~~l~--~~~~g--~pl~~~Ndl~vd~dG~IyfTD 210 (259)
+++.+|+|||-... .-|+.+|.+|..+..+. ....| +.+..|-||++|++|+||++.
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 99999999986544 45899998876444332 11122 346789999999999999975
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0016 Score=58.18 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=85.0
Q ss_pred CCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-EEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 77 DEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVG-WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 77 ~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~-~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
..-...|+++.- +++++--...+|..+.++.+.-. ..+| . ..+..-||+.|
T Consensus 87 ~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~------------------------~---y~~EGWGLt~d 138 (264)
T PF05096_consen 87 PPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTF------------------------P---YPGEGWGLTSD 138 (264)
T ss_dssp TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEE------------------------E----SSS--EEEEC
T ss_pred CccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEE------------------------e---cCCcceEEEcC
Confidence 344677888874 34555567788888888886531 1111 1 12344689877
Q ss_pred CCCCcEEEEeCCCceEEEECCCCe-EEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 156 KDTGDLYIADAYYGLLVVGSKGGL-ATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 156 ~~~G~L~VaD~~~Gl~~v~~~gg~-~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
. ..||++|....|+.+||++-+ .+.+.-..+|.|+...|.|..- +|.||..--.+. +++
T Consensus 139 g--~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td-----------------~I~ 198 (264)
T PF05096_consen 139 G--KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTD-----------------RIV 198 (264)
T ss_dssp S--SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSS-----------------EEE
T ss_pred C--CEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCC-----------------eEE
Confidence 4 589999999999999998643 3333334588899999999998 899998775432 899
Q ss_pred EEeCCCCcEEEecC----------------CCCCcceeEE
Q 039124 235 RYDPPTKSNSYCVR----------------WLGFSKWSTI 258 (259)
Q Consensus 235 rydp~tg~~~vl~~----------------~L~~pNGval 258 (259)
++||.||+++-.++ +-..-||||.
T Consensus 199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAy 238 (264)
T PF05096_consen 199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAY 238 (264)
T ss_dssp EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEE
T ss_pred EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeE
Confidence 99999999886542 1357899986
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0012 Score=60.14 Aligned_cols=109 Identities=9% Similarity=-0.005 Sum_probs=65.5
Q ss_pred CCceeEEEcCCCCEEEEEcC-CCeEEEEeCCCcc-EEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 80 FGPESLEFDGLGRGPYTGLA-DGRIVRWMGENVG-WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~-~G~I~ri~~~~~~-~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
..|..++++++|+.+|++.. ++.|..|+.+... .... . ........|.+++++++
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~----------~-------------~~~~~~~~~~~~~~~p~ 136 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP----------I-------------QIIEGLEGCHSANIDPD 136 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc----------e-------------eeccCCCcccEeEeCCC
Confidence 37899999999998898754 6777777554211 0000 0 00011235899999996
Q ss_pred CCcEEEEeCCCc-eEEEECCC-CeEEEee-ecCCCCCccccccEEEcCCCc-EEEecC
Q 039124 158 TGDLYIADAYYG-LLVVGSKG-GLATPLA-TQAGGKPILFANDLDVHKNGS-IFFTDT 211 (259)
Q Consensus 158 ~G~L~VaD~~~G-l~~v~~~g-g~~~~l~-~~~~g~pl~~~Ndl~vd~dG~-IyfTDs 211 (259)
+..+||++...+ |..++.++ +...... ....-.+-..|+++++++||+ +|+++.
T Consensus 137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec
Confidence 446788988766 55556543 3222110 000001124689999999998 778765
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.002 Score=60.53 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=72.2
Q ss_pred CCCceeEEEcCCCCEEEEEcC-CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 79 VFGPESLEFDGLGRGPYTGLA-DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~-~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
...|-++++++.|...|+... ++.|..++........ .......|.+++++++
T Consensus 73 ~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~--------------------------~~~vG~~P~~~~~~~~ 126 (381)
T COG3391 73 GVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG--------------------------SIPVGLGPVGLAVDPD 126 (381)
T ss_pred CccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee--------------------------EeeeccCCceEEECCC
Confidence 478999999998886676554 4788888854432111 1122237999999997
Q ss_pred CCcEEEEeCC--Cc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCC
Q 039124 158 TGDLYIADAY--YG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTS 212 (259)
Q Consensus 158 ~G~L~VaD~~--~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss 212 (259)
++.+||+|+. .+ +..+|.+++..... ..-|. .|-+++++++|. +|++|+.
T Consensus 127 ~~~vYV~n~~~~~~~vsvid~~t~~~~~~--~~vG~---~P~~~a~~p~g~~vyv~~~~ 180 (381)
T COG3391 127 GKYVYVANAGNGNNTVSVIDAATNKVTAT--IPVGN---TPTGVAVDPDGNKVYVTNSD 180 (381)
T ss_pred CCEEEEEecccCCceEEEEeCCCCeEEEE--EecCC---CcceEEECCCCCeEEEEecC
Confidence 6699999995 34 78889888753322 22222 458999999998 9999944
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0012 Score=69.07 Aligned_cols=125 Identities=17% Similarity=0.255 Sum_probs=83.7
Q ss_pred CCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCcccc-ccccCccccccccccccCcCCCcceEEEeC
Q 039124 78 EVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEK-LCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
+|..|.+|++|..|.+||++-. +|.+++.++. .++...+.....++ .|++..+ +. +-..-.|..|++++
T Consensus 473 ~L~~PkGIa~dk~g~lYfaD~t--~IR~iD~~gi-Istlig~~~~~~~p~~C~~~~k------l~-~~~leWPT~LaV~P 542 (1899)
T KOG4659|consen 473 QLIFPKGIAFDKMGNLYFADGT--RIRVIDTTGI-ISTLIGTTPDQHPPRTCAQITK------LV-DLQLEWPTSLAVDP 542 (1899)
T ss_pred eeccCCceeEccCCcEEEeccc--EEEEeccCce-EEEeccCCCCccCccccccccc------hh-heeeecccceeecC
Confidence 4789999999999997777532 5777777665 44433222211111 4874322 11 23456799999999
Q ss_pred CCCcEEEEeCCCceEEEECCCCeEEEeeec----------------CCCCCccccccEEEcCCCcEEEecCCCC
Q 039124 157 DTGDLYIADAYYGLLVVGSKGGLATPLATQ----------------AGGKPILFANDLDVHKNGSIFFTDTSKR 214 (259)
Q Consensus 157 ~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~----------------~~g~pl~~~Ndl~vd~dG~IyfTDss~~ 214 (259)
-++.|||.|... ++++++... ++.++.. +....+..+.+++|..+|.+|++++..+
T Consensus 543 mdnsl~Vld~nv-vlrit~~~r-V~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~r 614 (1899)
T KOG4659|consen 543 MDNSLLVLDTNV-VLRITVVHR-VRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGR 614 (1899)
T ss_pred CCCeEEEeecce-EEEEccCcc-EEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccch
Confidence 889999998643 889988764 4544321 1223466789999999999999998653
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.014 Score=50.83 Aligned_cols=89 Identities=18% Similarity=0.272 Sum_probs=56.0
Q ss_pred CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc-EEEEeCCCc
Q 039124 91 GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD-LYIADAYYG 169 (259)
Q Consensus 91 G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~-L~VaD~~~G 169 (259)
+++++++..+|.|..|+.++..... . + ....+|.+++++++ |. +|++....+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~-----------~------------~---~~~~~~~~l~~~~d-g~~l~~~~~~~~ 53 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTR-----------T------------F---PVGQRPRGITLSKD-GKLLYVCASDSD 53 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEE-----------E------------E---ECCCCCCceEECCC-CCEEEEEECCCC
Confidence 3567788889999999986542111 0 0 12345788999985 65 677765554
Q ss_pred -eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecC
Q 039124 170 -LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDT 211 (259)
Q Consensus 170 -l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDs 211 (259)
+..+|.++++....... + ..+..++++++|+ +|++..
T Consensus 54 ~v~~~d~~~~~~~~~~~~--~---~~~~~~~~~~~g~~l~~~~~ 92 (300)
T TIGR03866 54 TIQVIDLATGEVIGTLPS--G---PDPELFALHPNGKILYIANE 92 (300)
T ss_pred eEEEEECCCCcEEEeccC--C---CCccEEEECCCCCEEEEEcC
Confidence 77789887754322211 1 1246788999987 666653
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00027 Score=52.70 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=43.8
Q ss_pred ccEEEcCCCcEEEecCCCCCCcccce--eeeeccCCCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 196 NDLDVHKNGSIFFTDTSKRYNRVDHF--FILLEGESTGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 196 Ndl~vd~dG~IyfTDss~~~~~~~~~--~~~~e~~~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
|||+.-....+|+|.... | .+.|+ .+.+-.-+-|.++.||+ ++++++++++.+||||++
T Consensus 1 NDIvavG~~sFy~TNDhy-f-~~~~l~~lE~~l~~~~~~Vvyyd~--~~~~~va~g~~~aNGI~~ 61 (86)
T PF01731_consen 1 NDIVAVGPDSFYVTNDHY-F-TDPFLRLLETYLGLPWGNVVYYDG--KEVKVVASGFSFANGIAI 61 (86)
T ss_pred CCEEEECcCcEEEECchh-h-CcHHHHHHHHHhcCCCceEEEEeC--CEeEEeeccCCCCceEEE
Confidence 677777777899998753 2 22232 22333467889999998 579999999999999985
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00036 Score=40.84 Aligned_cols=22 Identities=18% Similarity=0.561 Sum_probs=19.5
Q ss_pred ccccccEEEcCCCcEEEecCCC
Q 039124 192 ILFANDLDVHKNGSIFFTDTSK 213 (259)
Q Consensus 192 l~~~Ndl~vd~dG~IyfTDss~ 213 (259)
|..|.+++++++|+||++|+..
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCC
T ss_pred CcCCcEEEEeCCCCEEEEECCC
Confidence 4689999999999999999764
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.003 Score=57.23 Aligned_cols=86 Identities=21% Similarity=0.192 Sum_probs=57.8
Q ss_pred ceEEEeCCCCcEEEEeCCC-------------ceEEEECCCCeEEEee--ecCCCCCccccccEEEcCC------CcEEE
Q 039124 150 LGLRFNKDTGDLYIADAYY-------------GLLVVGSKGGLATPLA--TQAGGKPILFANDLDVHKN------GSIFF 208 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~-------------Gl~~v~~~gg~~~~l~--~~~~g~pl~~~Ndl~vd~d------G~Iyf 208 (259)
.++.+|+ .|+|||.|.+. -|+.+|.+++++-.-. ...--.+-.+.||++||.. +.+|+
T Consensus 4 ~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 4 QRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred cEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 5889998 59999999763 2899999988632211 1111124569999999982 56999
Q ss_pred ecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEEecCCCCCc
Q 039124 209 TDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWLGFS 253 (259)
Q Consensus 209 TDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L~~p 253 (259)
||++.. .|+.||..+++...++++...+
T Consensus 83 tD~~~~-----------------glIV~dl~~~~s~Rv~~~~~~~ 110 (287)
T PF03022_consen 83 TDSGGP-----------------GLIVYDLATGKSWRVLHNSFSP 110 (287)
T ss_dssp EETTTC-----------------EEEEEETTTTEEEEEETCGCTT
T ss_pred eCCCcC-----------------cEEEEEccCCcEEEEecCCcce
Confidence 998742 5777777777776666654443
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.019 Score=53.65 Aligned_cols=67 Identities=10% Similarity=-0.020 Sum_probs=46.2
Q ss_pred CcCCCcceEEEeCCCCcEEEEeCC---------Cc-eEEEECCCCeEEEeeecCCCC----CccccccEEEcCCCc-EEE
Q 039124 144 KWCGRPLGLRFNKDTGDLYIADAY---------YG-LLVVGSKGGLATPLATQAGGK----PILFANDLDVHKNGS-IFF 208 (259)
Q Consensus 144 ~~~grPlGl~~d~~~G~L~VaD~~---------~G-l~~v~~~gg~~~~l~~~~~g~----pl~~~Ndl~vd~dG~-Iyf 208 (259)
..+.+|.|+ +.++...||||..+ .+ |-.+|.++.+...=+ ..... -...++.+++++||+ +|+
T Consensus 44 ~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i-~~p~~p~~~~~~~~~~~~ls~dgk~l~V 121 (352)
T TIGR02658 44 DGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADI-ELPEGPRFLVGTYPWMTSLTPDNKTLLF 121 (352)
T ss_pred EccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEE-ccCCCchhhccCccceEEECCCCCEEEE
Confidence 356789997 88876689999983 33 677798886422111 11111 256789999999997 998
Q ss_pred ecCC
Q 039124 209 TDTS 212 (259)
Q Consensus 209 TDss 212 (259)
++.+
T Consensus 122 ~n~~ 125 (352)
T TIGR02658 122 YQFS 125 (352)
T ss_pred ecCC
Confidence 8754
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.057 Score=51.15 Aligned_cols=176 Identities=13% Similarity=-0.011 Sum_probs=100.6
Q ss_pred CeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccE---EE-EEEeecCccccccccCccccccccccccCcC
Q 039124 71 GKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGW---ET-FAIVTSNWSEKLCARGVDSTTAKQWKHEKWC 146 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~---~~-fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 146 (259)
++.+..| ++.|-++++.++|.++.+....|++..+..++... .. ....... .++... .+....+....
T Consensus 59 ~~~~a~g-Le~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~------~~Gll~-~al~~~fa~~~ 130 (399)
T COG2133 59 VEVVAQG-LEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRG------QGGLLD-IALSPDFAQGR 130 (399)
T ss_pred ccccccc-ccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEecc------CCCccc-eEecccccccc
Confidence 4555566 99999999999996666666668887776443210 00 0000000 001000 01112223344
Q ss_pred CCcceEEEeCCCCcEEEEeCCCceEEEECCCCe---EEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcc-----
Q 039124 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGL---ATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRV----- 218 (259)
Q Consensus 147 grPlGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~---~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~----- 218 (259)
-.|+|+++.. +.+|++.. ..+.+++....+ ...+...+.+...++.-.|+++|||.+|+|--+......
T Consensus 131 ~~~~~~a~~~--~~~~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~ 207 (399)
T COG2133 131 LVYFGISEPG--GGLYVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNV 207 (399)
T ss_pred eeeeEEEeec--CCceEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCcc
Confidence 4578888864 57787754 245666611011 234455566555789999999999999999776521110
Q ss_pred cceeeeeccCCCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 219 DHFFILLEGESTGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 219 ~~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
...-.+++-+.. .++..|+.+...++..-|+.-|+|++|
T Consensus 208 ~~~Gk~~r~~~a-~~~~~d~p~~~~~i~s~G~RN~qGl~w 246 (399)
T COG2133 208 SLAGKVLRIDRA-GIIPADNPFPNSEIWSYGHRNPQGLAW 246 (399)
T ss_pred ccccceeeeccC-cccccCCCCCCcceEEeccCCccceee
Confidence 001111222222 255566667778899999999999986
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.013 Score=54.06 Aligned_cols=129 Identities=20% Similarity=0.244 Sum_probs=66.3
Q ss_pred CCeEEccCCCCCceeEEEcCC-CCEEEEEcCC---CeEEEEeCCCccEEEEEEeecCccccccccCcc------------
Q 039124 70 TGKLEFVDEVFGPESLEFDGL-GRGPYTGLAD---GRIVRWMGENVGWETFAIVTSNWSEKLCARGVD------------ 133 (259)
Q Consensus 70 ~~e~l~~~~l~gPE~ia~D~~-G~~~yt~~~~---G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~------------ 133 (259)
+.|++..| +.-|-+++||+. |++|.++... -+|.++...+. +- | +.|.++..
T Consensus 172 ~~~i~A~G-lRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~n----YG-----W--P~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 172 DSEIYAYG-LRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGN----YG-----W--PYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B-----------T--TTBSSSCSTTSS-ECTGSS-
T ss_pred eEEEEEeC-CCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCc----CC-----C--CCCcCCCCCCCCccccccCC
Confidence 44766665 999999999998 7744444321 35777765432 11 1 01221000
Q ss_pred -ccccccccccCcCCCcceEEEeCC------CCcEEEEeCCCc-eEEEECCCC-eEEEeeecCCCCCccccccEEEcCCC
Q 039124 134 -STTAKQWKHEKWCGRPLGLRFNKD------TGDLYIADAYYG-LLVVGSKGG-LATPLATQAGGKPILFANDLDVHKNG 204 (259)
Q Consensus 134 -~~~~~~~~~~~~~grPlGl~~d~~------~G~L~VaD~~~G-l~~v~~~gg-~~~~l~~~~~g~pl~~~Ndl~vd~dG 204 (259)
.+....+.+ .....|.|+.|-+. .|.++|+|...+ |+++..+.+ .+... ..+-+..-.++-|+++++||
T Consensus 240 ~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~r~~~v~~~pDG 317 (331)
T PF07995_consen 240 PGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEE-EEFLGGFGGRPRDVAQGPDG 317 (331)
T ss_dssp TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEE-EEECTTSSS-EEEEEEETTS
T ss_pred CCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccce-EEccccCCCCceEEEEcCCC
Confidence 000000111 22246899988742 267999998654 877776533 21111 11112222378999999999
Q ss_pred cEEEecCC
Q 039124 205 SIFFTDTS 212 (259)
Q Consensus 205 ~IyfTDss 212 (259)
.||++|..
T Consensus 318 ~Lyv~~d~ 325 (331)
T PF07995_consen 318 ALYVSDDS 325 (331)
T ss_dssp EEEEEE-T
T ss_pred eEEEEECC
Confidence 99999863
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.013 Score=57.60 Aligned_cols=88 Identities=20% Similarity=0.279 Sum_probs=51.9
Q ss_pred CeEEccCCCCCceeEEEcCCCCEEEEEc-C-------------------CCeEEEEeCCCc-------cEEEEEEeecCc
Q 039124 71 GKLEFVDEVFGPESLEFDGLGRGPYTGL-A-------------------DGRIVRWMGENV-------GWETFAIVTSNW 123 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~~G~~~yt~~-~-------------------~G~I~ri~~~~~-------~~~~fa~~~~~~ 123 (259)
|..+.--.+..||++.+++....+|+.+ . .|.|+|+.+++. .|..|.......
T Consensus 341 A~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~ 420 (524)
T PF05787_consen 341 ADAVGATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPT 420 (524)
T ss_pred cccCccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcc
Confidence 3444445799999999999543455543 2 258999998765 455554432110
Q ss_pred cccccccCccccccccccccCcCCCcceEEEeCCCCcEEEE-eCC
Q 039124 124 SEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIA-DAY 167 (259)
Q Consensus 124 ~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~Va-D~~ 167 (259)
.. .... ...........|-+|+|++ .|+|||+ |..
T Consensus 421 ~~--~~~~------~~~~~~~~f~sPDNL~~d~-~G~LwI~eD~~ 456 (524)
T PF05787_consen 421 DA--SGNG------SNKCDDNGFASPDNLAFDP-DGNLWIQEDGG 456 (524)
T ss_pred cc--cccc------cCcccCCCcCCCCceEECC-CCCEEEEeCCC
Confidence 00 0000 0011234566799999999 4999997 443
|
|
| >COG3211 PhoX Predicted phosphatase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0084 Score=58.46 Aligned_cols=128 Identities=22% Similarity=0.322 Sum_probs=76.4
Q ss_pred CCeEEccCCCCCceeEEEcC-CCCEEEEEcCC----------------CeEEEEeCCCc-------cEEEEEEeecCccc
Q 039124 70 TGKLEFVDEVFGPESLEFDG-LGRGPYTGLAD----------------GRIVRWMGENV-------GWETFAIVTSNWSE 125 (259)
Q Consensus 70 ~~e~l~~~~l~gPE~ia~D~-~G~~~yt~~~~----------------G~I~ri~~~~~-------~~~~fa~~~~~~~~ 125 (259)
.|..+.--.+..||+|++.+ .|.+|++-+.+ |.|+||.+.+. .|..|...+...
T Consensus 407 AA~~lGAT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~-- 484 (616)
T COG3211 407 AADKLGATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPS-- 484 (616)
T ss_pred HHHHhCCccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcc--
Confidence 35666666789999999998 45544443333 46999988765 577765432211
Q ss_pred cccccCccccccccccccCcCCCcceEEEeCCCCcEEEE-eCCC--------ceEEE---ECCCCeEEEeeecCCCCCcc
Q 039124 126 KLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIA-DAYY--------GLLVV---GSKGGLATPLATQAGGKPIL 193 (259)
Q Consensus 126 ~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~Va-D~~~--------Gl~~v---~~~gg~~~~l~~~~~g~pl~ 193 (259)
..+++. + ..+. ...++.|-+|+||+. |+|||+ |... |+..+ +++++++......--| -
T Consensus 485 -~~~~~~-~---~~~~-~~~f~~PDnl~fD~~-GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g---~ 554 (616)
T COG3211 485 -VLEGGA-S---ANIN-ANWFNSPDNLAFDPW-GRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIG---C 554 (616)
T ss_pred -cccccc-c---cCcc-cccccCCCceEECCC-CCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCc---c
Confidence 111111 0 0011 245677999999995 999996 4332 45444 4555655554432111 1
Q ss_pred ccccEEEcCCCc-EEEe
Q 039124 194 FANDLDVHKNGS-IFFT 209 (259)
Q Consensus 194 ~~Ndl~vd~dG~-IyfT 209 (259)
-.-+.++.|||+ +|+.
T Consensus 555 E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 555 EFTGPCFSPDGKTLFVN 571 (616)
T ss_pred eeecceeCCCCceEEEE
Confidence 345788999987 6665
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.11 Score=48.51 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=72.3
Q ss_pred CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccC-cCCCcce---EEEeCCCCcEEEEe
Q 039124 90 LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEK-WCGRPLG---LRFNKDTGDLYIAD 165 (259)
Q Consensus 90 ~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~grPlG---l~~d~~~G~L~VaD 165 (259)
+|+.+|++.. |.|..++..+..... .. .++. .- ..+. ..=||-| ++++++++++||+.
T Consensus 205 dg~~~~vs~e-G~V~~id~~~~~~~~-~~---~~~~-~~------------~~~~~~~wrP~g~q~ia~~~dg~~lyV~~ 266 (352)
T TIGR02658 205 SGRLVWPTYT-GKIFQIDLSSGDAKF-LP---AIEA-FT------------EAEKADGWRPGGWQQVAYHRARDRIYLLA 266 (352)
T ss_pred CCcEEEEecC-CeEEEEecCCCccee-cc---eeee-cc------------ccccccccCCCcceeEEEcCCCCEEEEEe
Confidence 7898999988 999999854432111 00 0000 00 0000 0124555 99998778999953
Q ss_pred ----------CCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc--EEEecCCCCCCcccceeeeeccCCCceE
Q 039124 166 ----------AYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS--IFFTDTSKRYNRVDHFFILLEGESTGRL 233 (259)
Q Consensus 166 ----------~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~--IyfTDss~~~~~~~~~~~~~e~~~~GrL 233 (259)
....+..+|.+++++..-+. -| ..+.++++++||+ +|.|+.. ++.|
T Consensus 267 ~~~~~~thk~~~~~V~ViD~~t~kvi~~i~--vG---~~~~~iavS~Dgkp~lyvtn~~-----------------s~~V 324 (352)
T TIGR02658 267 DQRAKWTHKTASRFLFVVDAKTGKRLRKIE--LG---HEIDSINVSQDAKPLLYALSTG-----------------DKTL 324 (352)
T ss_pred cCCccccccCCCCEEEEEECCCCeEEEEEe--CC---CceeeEEECCCCCeEEEEeCCC-----------------CCcE
Confidence 22459999999875332221 12 3689999999998 6666643 3468
Q ss_pred EEEeCCCCcEEEec
Q 039124 234 LRYDPPTKSNSYCV 247 (259)
Q Consensus 234 ~rydp~tg~~~vl~ 247 (259)
..+|..+++...-+
T Consensus 325 sViD~~t~k~i~~i 338 (352)
T TIGR02658 325 YIFDAETGKELSSV 338 (352)
T ss_pred EEEECcCCeEEeee
Confidence 88888777544333
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.021 Score=51.72 Aligned_cols=115 Identities=19% Similarity=0.210 Sum_probs=67.5
Q ss_pred CCCceeEEEcCCCCEEEEEcCC--CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 79 VFGPESLEFDGLGRGPYTGLAD--GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~--G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
-.|=|++|||+++..+|+.-.. =+|+.++........- .. -+ .+-.+.+. .-.--|+.|++
T Consensus 180 N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~-~~--------~~----~~~~~~~f----~~DvSgl~~~~ 242 (316)
T COG3204 180 NKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH-AS--------LD----PTADRDLF----VLDVSGLEFNA 242 (316)
T ss_pred CcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc-cc--------cC----cccccceE----eeccccceecC
Confidence 4578999999977667776433 3466665433211110 00 00 00001111 11123899998
Q ss_pred CCCcEEEE-eCCCceEEEECCCCeEEEee--ecCCC--CCccccccEEEcCCCcEEEec
Q 039124 157 DTGDLYIA-DAYYGLLVVGSKGGLATPLA--TQAGG--KPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 157 ~~G~L~Va-D~~~Gl~~v~~~gg~~~~l~--~~~~g--~pl~~~Ndl~vd~dG~IyfTD 210 (259)
.++.|+|- |-..-|+++|.+|+.++.+. ....| ..+..+.|+++|++|+||++-
T Consensus 243 ~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 243 ITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred CCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 78899985 44445899999887544432 12222 235678999999999999864
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.12 Score=49.57 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=68.3
Q ss_pred eeEEEcCCCCEE-EEEcCCCe--EEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 83 ESLEFDGLGRGP-YTGLADGR--IVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 83 E~ia~D~~G~~~-yt~~~~G~--I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
.+++|.++|+.+ |+...+|. |+.++.++....... ...+.....++.++ |
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt--------------------------~~~~~~~~p~wSpD-G 317 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRIT--------------------------RHRAIDTEPSWHPD-G 317 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc--------------------------cCCCCccceEECCC-C
Confidence 367899998844 56666664 888887665322210 00112234577775 6
Q ss_pred c-EEEE-eCC--CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 160 D-LYIA-DAY--YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 160 ~-L~Va-D~~--~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
+ |+++ +.. ..|+.++.++++.+.+.. ++. .....++++||+ |||+.... +..+|+
T Consensus 318 ~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~--~g~---~~~~~~~SpDG~~l~~~~~~~---------------g~~~I~ 377 (448)
T PRK04792 318 KSLIFTSERGGKPQIYRVNLASGKVSRLTF--EGE---QNLGGSITPDGRSMIMVNRTN---------------GKFNIA 377 (448)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEEEec--CCC---CCcCeeECCCCCEEEEEEecC---------------CceEEE
Confidence 5 4333 221 249999998887666642 221 123468899997 77765321 223677
Q ss_pred EEeCCCCcEEEec
Q 039124 235 RYDPPTKSNSYCV 247 (259)
Q Consensus 235 rydp~tg~~~vl~ 247 (259)
++|+++++.+.+.
T Consensus 378 ~~dl~~g~~~~lt 390 (448)
T PRK04792 378 RQDLETGAMQVLT 390 (448)
T ss_pred EEECCCCCeEEcc
Confidence 7777777666554
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.22 Score=47.56 Aligned_cols=121 Identities=16% Similarity=0.082 Sum_probs=71.7
Q ss_pred eeEEEcCCCC-EEEEEcCCC--eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 83 ESLEFDGLGR-GPYTGLADG--RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 83 E~ia~D~~G~-~~yt~~~~G--~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
.+++|.++|+ ++|++..+| +|+.++.++..-.... + . ...+.....++.++ |
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~---------l-------------t--~~~~~~~~p~wSPD-G 338 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL---------L-------------T--KKYRNSSCPAWSPD-G 338 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE---------e-------------c--cCCCCccceeECCC-C
Confidence 4678999997 566766555 5777665321100000 0 0 00112234577885 6
Q ss_pred cEE-EEeCC---CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 160 DLY-IADAY---YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 160 ~L~-VaD~~---~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
+.+ ++... ..|+.+|.++++.+.+... ++ ...+....+||+ |+|+-.. .....||
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~----~~~~p~wSpDG~~L~f~~~~---------------~g~~~L~ 398 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PE----NKESPSWAIDSLHLVYSAGN---------------SNESELY 398 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CC----CccceEECCCCCEEEEEECC---------------CCCceEE
Confidence 543 33222 2488899999987766532 11 245678899997 7776432 2235799
Q ss_pred EEeCCCCcEEEecC
Q 039124 235 RYDPPTKSNSYCVR 248 (259)
Q Consensus 235 rydp~tg~~~vl~~ 248 (259)
.+|.++++.+.+..
T Consensus 399 ~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 399 LISLITKKTRKIVI 412 (428)
T ss_pred EEECCCCCEEEeec
Confidence 99998888877764
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.19 Score=48.25 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=68.8
Q ss_pred eEEEcCCCC-EEEEEcCCC--eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 84 SLEFDGLGR-GPYTGLADG--RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 84 ~ia~D~~G~-~~yt~~~~G--~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
+++|.++|+ ++|+...++ +|+.++..+.....+ . ...+.-...++.++ |+
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-----------t---------------~~~g~~~~~~wSPD-G~ 274 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-----------T---------------SFPGINGAPRFSPD-GK 274 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-----------c---------------CCCCCcCCeeECCC-CC
Confidence 578999987 456665544 588888765422111 0 00111224678885 65
Q ss_pred -EEEEeCCC---ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEEE
Q 039124 161 -LYIADAYY---GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLLR 235 (259)
Q Consensus 161 -L~VaD~~~---Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~r 235 (259)
|+++.... .|+.++.++++.+.+... . ......+.++||+ |+|+-.. ...-.||+
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~-~----~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~ 334 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALTRITRH-R----AIDTEPSWHPDGKSLIFTSER---------------GGKPQIYR 334 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeEECccC-C----CCccceEECCCCCEEEEEECC---------------CCCceEEE
Confidence 65542222 399999998877766532 1 1234567889997 6665321 11236888
Q ss_pred EeCCCCcEEEe
Q 039124 236 YDPPTKSNSYC 246 (259)
Q Consensus 236 ydp~tg~~~vl 246 (259)
+|.++++.+.+
T Consensus 335 ~dl~~g~~~~L 345 (448)
T PRK04792 335 VNLASGKVSRL 345 (448)
T ss_pred EECCCCCEEEE
Confidence 88877776655
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.035 Score=50.84 Aligned_cols=102 Identities=18% Similarity=0.120 Sum_probs=66.5
Q ss_pred CCCeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCC
Q 039124 69 VTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGR 148 (259)
Q Consensus 69 ~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gr 148 (259)
..-|.+..| +..|||+.| .+|++++.+...|+|.+++++.+..+.. | ...|+
T Consensus 193 ~s~evl~~G-LsmPhSPRW-hdgrLwvldsgtGev~~vD~~~G~~e~V-----------a---------------~vpG~ 244 (335)
T TIGR03032 193 PSGEVVASG-LSMPHSPRW-YQGKLWLLNSGRGELGYVDPQAGKFQPV-----------A---------------FLPGF 244 (335)
T ss_pred CCCCEEEcC-ccCCcCCcE-eCCeEEEEECCCCEEEEEcCCCCcEEEE-----------E---------------ECCCC
Confidence 445667666 999999999 5899999999999999999974433331 1 23578
Q ss_pred cceEEEeCCCCcEEEE-eC--------------------CCceEEEECCCCeEEEeeecCCCCCccccccEEEcCC
Q 039124 149 PLGLRFNKDTGDLYIA-DA--------------------YYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKN 203 (259)
Q Consensus 149 PlGl~~d~~~G~L~Va-D~--------------------~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~d 203 (259)
|.||.|. |++.|+ -+ .-||..||..+|.+..... ++|. ..-.-|++|-|+
T Consensus 245 ~rGL~f~---G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~-feg~-v~EifdV~vLPg 315 (335)
T TIGR03032 245 TRGLAFA---GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLR-FEGV-IEEIYDVAVLPG 315 (335)
T ss_pred Cccccee---CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEE-eCCc-eeEEEEEEEecC
Confidence 9999997 455443 21 1268888888886443332 3331 233445555443
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.034 Score=48.22 Aligned_cols=93 Identities=17% Similarity=0.162 Sum_probs=64.4
Q ss_pred CCcceEEEeCCCCcEEEEeCCCceEEEECCCCe-EEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeee
Q 039124 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGL-ATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILL 225 (259)
Q Consensus 147 grPlGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~-~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~ 225 (259)
|.--||+.|. .+|+..|...-|..-||++=. ...+....+|.|+...|.|.-- ||.+|..-.-+
T Consensus 131 GeGWgLt~d~--~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t------------ 195 (262)
T COG3823 131 GEGWGLTSDD--KNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQT------------ 195 (262)
T ss_pred CcceeeecCC--cceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeee------------
Confidence 4446888875 479888887778888987521 2223234689999999999876 78877654321
Q ss_pred ccCCCceEEEEeCCCCcEEEec-------------CCCCCcceeEEC
Q 039124 226 EGESTGRLLRYDPPTKSNSYCV-------------RWLGFSKWSTII 259 (259)
Q Consensus 226 e~~~~GrL~rydp~tg~~~vl~-------------~~L~~pNGval~ 259 (259)
-|+.|+||++|++...+ ++.-..||||.+
T Consensus 196 -----~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~ 237 (262)
T COG3823 196 -----TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHD 237 (262)
T ss_pred -----cceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeec
Confidence 27888999888876553 244578898864
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.029 Score=52.79 Aligned_cols=97 Identities=12% Similarity=0.015 Sum_probs=52.8
Q ss_pred eEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCC--CC---cccceeeee
Q 039124 151 GLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKR--YN---RVDHFFILL 225 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~--~~---~~~~~~~~~ 225 (259)
|..+.+++..+|-......|++||.++.+.+.+....++ .+---...++.|++.++..-..+ +. ..+++.+.+
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~--~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~ 162 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDD--WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFY 162 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TT--EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHH
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcc--cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHH
Confidence 555566555664344456799999999876666543332 11112233466888665533221 21 123566788
Q ss_pred ccCCCceEEEEeCCCCcEEEecCC
Q 039124 226 EGESTGRLLRYDPPTKSNSYCVRW 249 (259)
Q Consensus 226 e~~~~GrL~rydp~tg~~~vl~~~ 249 (259)
+.++..||+++|.+||+.+++.+.
T Consensus 163 ~a~p~~~i~~idl~tG~~~~v~~~ 186 (386)
T PF14583_consen 163 EARPHCRIFTIDLKTGERKVVFED 186 (386)
T ss_dssp HC---EEEEEEETTT--EEEEEEE
T ss_pred hhCCCceEEEEECCCCceeEEEec
Confidence 899999999999999999998754
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0068 Score=35.34 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=24.6
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEE
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRW 106 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri 106 (259)
+..|.++++|++|+++.++..+++|+++
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4689999999999988899999999874
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.051 Score=53.36 Aligned_cols=104 Identities=16% Similarity=0.272 Sum_probs=64.1
Q ss_pred CcCCCcceEEEeCCCCcEEEEeCCC--------------------ceEEEECCCC-------eEEEeeecC---------
Q 039124 144 KWCGRPLGLRFNKDTGDLYIADAYY--------------------GLLVVGSKGG-------LATPLATQA--------- 187 (259)
Q Consensus 144 ~~~grPlGl~~d~~~G~L~VaD~~~--------------------Gl~~v~~~gg-------~~~~l~~~~--------- 187 (259)
..+.||-|+.+++.+|.+|++-... +|++++++++ ..+.++..-
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 4577999999999889999974221 3899988766 334433211
Q ss_pred ----CCCCccccccEEEcCCCcEEE-ecCCCCCCc------ccceeeeeccCCCceEEEEeCCCCcEEEecC
Q 039124 188 ----GGKPILFANDLDVHKNGSIFF-TDTSKRYNR------VDHFFILLEGESTGRLLRYDPPTKSNSYCVR 248 (259)
Q Consensus 188 ----~g~pl~~~Ndl~vd~dG~Iyf-TDss~~~~~------~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~ 248 (259)
+...+..|+.|+++++|+||+ +|.+..-.. ....+.+......- ++.+++.+++++.++.
T Consensus 427 ~~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~-~~~~~~~~g~~~rf~~ 497 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNN-VWAYDPDTGELKRFLV 497 (524)
T ss_pred cCcccCCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccce-eeeccccccceeeecc
Confidence 234688999999999999887 555543110 00111111111111 5566777777777653
|
|
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.15 Score=48.38 Aligned_cols=156 Identities=17% Similarity=0.254 Sum_probs=85.2
Q ss_pred CCCCCcccCCCeEEccCCCCCceeEEEcCC-CCEEEEEcCCC-------eEEEEeCCCc-cEEEEEEeecCcc-----cc
Q 039124 61 PRDNLSRLVTGKLEFVDEVFGPESLEFDGL-GRGPYTGLADG-------RIVRWMGENV-GWETFAIVTSNWS-----EK 126 (259)
Q Consensus 61 ~~~~n~~L~~~e~l~~~~l~gPE~ia~D~~-G~~~yt~~~~G-------~I~ri~~~~~-~~~~fa~~~~~~~-----~~ 126 (259)
....|+.-.+.|+...| +..|-+++|++. |. +||..+.- .+-.+...+. +|=- .....+-. +.
T Consensus 221 ~~~~d~p~~~~~i~s~G-~RN~qGl~w~P~tg~-Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~-~~~G~~~~g~~~~~~ 297 (399)
T COG2133 221 IIPADNPFPNSEIWSYG-HRNPQGLAWHPVTGA-LWTTEHGPDALRGPDELNSIRPGKNYGWPY-AYFGQNYDGRAIPDG 297 (399)
T ss_pred ccccCCCCCCcceEEec-cCCccceeecCCCCc-EEEEecCCCcccCcccccccccCCccCCce-eccCcccCccccCCC
Confidence 34455556667777666 889999999997 66 66654433 1223322211 1111 11000000 00
Q ss_pred ccccCccccccccccccCcCCCcceEEEeCCC------CcEEEEeCCC-ceEEEECCCCeEEEeeecCCCCCccccccEE
Q 039124 127 LCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT------GDLYIADAYY-GLLVVGSKGGLATPLATQAGGKPILFANDLD 199 (259)
Q Consensus 127 ~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~------G~L~VaD~~~-Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~ 199 (259)
.+.... ..|.-+|. .| -.|+||+|-..+ |.|+|+-... .+++++++++....+...+.+.-..++-||+
T Consensus 298 ~~~~~~-~~p~~~~~-~h--~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~ 373 (399)
T COG2133 298 TVVAGA-IQPVYTWA-PH--IAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVA 373 (399)
T ss_pred cccccc-cCCceeec-cc--cccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceE
Confidence 000000 00111221 12 347999998522 5888876544 4788888877212222212211116899999
Q ss_pred EcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCC
Q 039124 200 VHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPP 239 (259)
Q Consensus 200 vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~ 239 (259)
+++||-||++|.. .+|+|||+...
T Consensus 374 v~~DGallv~~D~----------------~~g~i~Rv~~~ 397 (399)
T COG2133 374 VAPDGALLVLTDQ----------------GDGRILRVSYA 397 (399)
T ss_pred ECCCCeEEEeecC----------------CCCeEEEecCC
Confidence 9999999999863 36899999875
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.47 Score=43.85 Aligned_cols=68 Identities=19% Similarity=0.326 Sum_probs=41.6
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEE
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYI 163 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~V 163 (259)
+++++ ++.+|++..+|.|+.++...+. ..+... . . ....+ +..++ ++.+||
T Consensus 60 ~p~v~--~~~v~v~~~~g~v~a~d~~tG~-~~W~~~-------~-------------~-~~~~~---~p~v~--~~~v~v 110 (377)
T TIGR03300 60 QPAVA--GGKVYAADADGTVVALDAETGK-RLWRVD-------L-------------D-ERLSG---GVGAD--GGLVFV 110 (377)
T ss_pred ceEEE--CCEEEEECCCCeEEEEEccCCc-Eeeeec-------C-------------C-CCccc---ceEEc--CCEEEE
Confidence 45554 4568999999999999975442 111110 0 0 01122 23444 378998
Q ss_pred EeCCCceEEEECCCCeE
Q 039124 164 ADAYYGLLVVGSKGGLA 180 (259)
Q Consensus 164 aD~~~Gl~~v~~~gg~~ 180 (259)
.+....++.+|.++|+.
T Consensus 111 ~~~~g~l~ald~~tG~~ 127 (377)
T TIGR03300 111 GTEKGEVIALDAEDGKE 127 (377)
T ss_pred EcCCCEEEEEECCCCcE
Confidence 87666699999987753
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.28 Score=46.83 Aligned_cols=117 Identities=14% Similarity=0.070 Sum_probs=69.6
Q ss_pred eEEEcCCCC--EEEEEcC--CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 84 SLEFDGLGR--GPYTGLA--DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 84 ~ia~D~~G~--~~yt~~~--~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
++.|.++|+ ++|++.. +..|+.++..++..+.++ ...|.....++.++ |
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt--------------------------~~~g~~~~~~~SPD-G 244 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA--------------------------SSQGMLVVSDVSKD-G 244 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe--------------------------cCCCcEEeeEECCC-C
Confidence 678999986 4556665 356899888665322211 01122223457775 5
Q ss_pred -cEEEEeCC---CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 160 -DLYIADAY---YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 160 -~L~VaD~~---~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
.|++.... ..|+.++.+++..+.+... .+. --.....|||+ |||+.... ..-+||
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~-~~~----d~~p~~SPDG~~I~F~Sdr~---------------g~~~Iy 304 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNY-PGI----DVNGNFVEDDKRIVFVSDRL---------------GYPNIF 304 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccC-CCc----cCccEECCCCCEEEEEECCC---------------CCceEE
Confidence 45443322 2499999988877777542 221 11336889996 88875431 223788
Q ss_pred EEeCCCCcEEEec
Q 039124 235 RYDPPTKSNSYCV 247 (259)
Q Consensus 235 rydp~tg~~~vl~ 247 (259)
++|.++|+.+.+.
T Consensus 305 ~~dl~~g~~~rlt 317 (419)
T PRK04043 305 MKKLNSGSVEQVV 317 (419)
T ss_pred EEECCCCCeEeCc
Confidence 8888888775554
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.38 Score=45.85 Aligned_cols=118 Identities=13% Similarity=0.097 Sum_probs=69.1
Q ss_pred eEEEcCCCCEE-EEEcCCC--eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 84 SLEFDGLGRGP-YTGLADG--RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 84 ~ia~D~~G~~~-yt~~~~G--~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
+++|.++|+.+ |+...+| .|+.++.++.....+ . ..........+.++ |+
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-----------t---------------~~~~~~~~~~wSPD-G~ 299 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-----------T---------------DGRSNNTEPTWFPD-SQ 299 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-----------c---------------CCCCCcCceEECCC-CC
Confidence 57899999744 4545454 588888766532221 0 00112345688885 66
Q ss_pred EE--EEeCC--CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEEE
Q 039124 161 LY--IADAY--YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLLR 235 (259)
Q Consensus 161 L~--VaD~~--~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~r 235 (259)
.+ ++|.. ..|+.++.+++..+.+... + .......+.+||+ |+|+.... ....++.
T Consensus 300 ~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~--~---~~~~~~~~SpDG~~Ia~~~~~~---------------g~~~I~~ 359 (429)
T PRK03629 300 NLAYTSDQAGRPQVYKVNINGGAPQRITWE--G---SQNQDADVSSDGKFMVMVSSNG---------------GQQHIAK 359 (429)
T ss_pred EEEEEeCCCCCceEEEEECCCCCeEEeecC--C---CCccCEEECCCCCEEEEEEccC---------------CCceEEE
Confidence 33 34432 2589999998876666421 2 1234678899997 65654321 1235777
Q ss_pred EeCCCCcEEEecC
Q 039124 236 YDPPTKSNSYCVR 248 (259)
Q Consensus 236 ydp~tg~~~vl~~ 248 (259)
+|.++++.+.|.+
T Consensus 360 ~dl~~g~~~~Lt~ 372 (429)
T PRK03629 360 QDLATGGVQVLTD 372 (429)
T ss_pred EECCCCCeEEeCC
Confidence 7777777666543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.38 Score=45.72 Aligned_cols=119 Identities=16% Similarity=0.192 Sum_probs=68.3
Q ss_pred ceeEEEcCCCC-EEEEEcC--CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 82 PESLEFDGLGR-GPYTGLA--DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 82 PE~ia~D~~G~-~~yt~~~--~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
-.+++|.++|+ ++|++.. +..|+.++..++....+. ...+.-...++.++
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~--------------------------~~~g~~~~~~~SPD- 256 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG--------------------------NFPGMTFAPRFSPD- 256 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee--------------------------cCCCcccCcEECCC-
Confidence 34678999887 5566643 357999988665322110 01122246678885
Q ss_pred Cc-EEEE-eC--CCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceE
Q 039124 159 GD-LYIA-DA--YYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRL 233 (259)
Q Consensus 159 G~-L~Va-D~--~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL 233 (259)
|+ |+++ +. ...|+.+|.+++..+.+... .+ .......++||+ |+|+-... ...+|
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~-~~----~~~~~~~spDG~~i~f~s~~~---------------g~~~I 316 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDS-PA----IDTSPSYSPDGSQIVFESDRS---------------GSPQL 316 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEEccCC-CC----ccCceeEcCCCCEEEEEECCC---------------CCCeE
Confidence 65 4433 22 23499999998877666532 11 234578889987 66653211 12356
Q ss_pred EEEeCCCCcEEEec
Q 039124 234 LRYDPPTKSNSYCV 247 (259)
Q Consensus 234 ~rydp~tg~~~vl~ 247 (259)
|.+|..+++.+.+.
T Consensus 317 y~~d~~g~~~~~lt 330 (435)
T PRK05137 317 YVMNADGSNPRRIS 330 (435)
T ss_pred EEEECCCCCeEEee
Confidence 66666655555543
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.032 Score=51.08 Aligned_cols=88 Identities=26% Similarity=0.336 Sum_probs=59.3
Q ss_pred CCCcceEEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCC-CCCcc--cc-
Q 039124 146 CGRPLGLRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSK-RYNRV--DH- 220 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~-~~~~~--~~- 220 (259)
...|.+-++.. |+||++|++.| +.++|+++|..+.++ .++| ++.+|++. |++.|.-+|. +-+.. ..
T Consensus 202 LsmPhSPRWhd--grLwvldsgtGev~~vD~~~G~~e~Va-~vpG----~~rGL~f~--G~llvVgmSk~R~~~~f~glp 272 (335)
T TIGR03032 202 LSMPHSPRWYQ--GKLWLLNSGRGELGYVDPQAGKFQPVA-FLPG----FTRGLAFA--GDFAFVGLSKLRESRVFGGLP 272 (335)
T ss_pred ccCCcCCcEeC--CeEEEEECCCCEEEEEcCCCCcEEEEE-ECCC----CCccccee--CCEEEEEeccccCCCCcCCCc
Confidence 45688888983 89999999988 899999988777775 4665 78999999 8766554443 21100 00
Q ss_pred eeeeeccCCCceEEEEeCCCCcE
Q 039124 221 FFILLEGESTGRLLRYDPPTKSN 243 (259)
Q Consensus 221 ~~~~~e~~~~GrL~rydp~tg~~ 243 (259)
+.+-++....| |+.+|..||++
T Consensus 273 l~~~l~~~~CG-v~vidl~tG~v 294 (335)
T TIGR03032 273 IEERLDALGCG-VAVIDLNSGDV 294 (335)
T ss_pred hhhhhhhhccc-EEEEECCCCCE
Confidence 11112223344 88899998875
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.57 Score=44.51 Aligned_cols=117 Identities=22% Similarity=0.202 Sum_probs=66.3
Q ss_pred eEEEcCCCCEE-EEEcCCC--eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 84 SLEFDGLGRGP-YTGLADG--RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 84 ~ia~D~~G~~~-yt~~~~G--~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
+++|.++|+.+ |+...+| .|+.++.++.....+ + ...+.....+|.++ |+
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l--t------------------------~~~~~~~~~~~spD-G~ 304 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL--T------------------------NHFGIDTEPTWAPD-GK 304 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEEC--c------------------------cCCCCccceEECCC-CC
Confidence 57898988744 5544444 588888766532211 0 00112234678885 65
Q ss_pred -EEE-EeCCC--ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEEE
Q 039124 161 -LYI-ADAYY--GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLLR 235 (259)
Q Consensus 161 -L~V-aD~~~--Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~r 235 (259)
|++ +|... .|+.++.++++.+.+.. .+ ......++.+||+ |+++.... ...+|+.
T Consensus 305 ~l~f~sd~~g~~~iy~~dl~~g~~~~lt~--~g---~~~~~~~~SpDG~~Ia~~~~~~---------------~~~~I~v 364 (433)
T PRK04922 305 SIYFTSDRGGRPQIYRVAASGGSAERLTF--QG---NYNARASVSPDGKKIAMVHGSG---------------GQYRIAV 364 (433)
T ss_pred EEEEEECCCCCceEEEEECCCCCeEEeec--CC---CCccCEEECCCCCEEEEEECCC---------------CceeEEE
Confidence 433 33222 38999988877666642 22 1234688999997 77764321 1125666
Q ss_pred EeCCCCcEEEec
Q 039124 236 YDPPTKSNSYCV 247 (259)
Q Consensus 236 ydp~tg~~~vl~ 247 (259)
+|..+++.+.+.
T Consensus 365 ~d~~~g~~~~Lt 376 (433)
T PRK04922 365 MDLSTGSVRTLT 376 (433)
T ss_pred EECCCCCeEECC
Confidence 666666555443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.59 Score=44.12 Aligned_cols=117 Identities=13% Similarity=0.146 Sum_probs=67.6
Q ss_pred eeEEEcCCCCE-EEEEcCC--CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 83 ESLEFDGLGRG-PYTGLAD--GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 83 E~ia~D~~G~~-~yt~~~~--G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
.+++|.++|+. +|++..+ ..|+.++.+++....+ . ...+.....++.++ |
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-----------~---------------~~~g~~~~~~~SpD-G 254 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-----------T---------------NFEGLNGAPAWSPD-G 254 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-----------c---------------CCCCCcCCeEECCC-C
Confidence 57789999874 4776554 3588888765522211 0 01122235788885 6
Q ss_pred c-EEEE-eCC--CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 160 D-LYIA-DAY--YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 160 ~-L~Va-D~~--~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
+ |+++ +.. ..|+.+|.+++..+.+... .+ .......++||+ |||+-.. .+..+||
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~----~~~~~~~spDg~~i~f~s~~---------------~g~~~iy 314 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLSRVTNH-PA----IDTEPFWGKDGRTLYFTSDR---------------GGKPQIY 314 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEEcccC-CC----CcCCeEECCCCCEEEEEECC---------------CCCceEE
Confidence 5 4433 222 2489999998877666532 11 223467788887 7776321 1223577
Q ss_pred EEeCCCCcEEEe
Q 039124 235 RYDPPTKSNSYC 246 (259)
Q Consensus 235 rydp~tg~~~vl 246 (259)
++|..+++.+.+
T Consensus 315 ~~d~~~g~~~~l 326 (430)
T PRK00178 315 KVNVNGGRAERV 326 (430)
T ss_pred EEECCCCCEEEe
Confidence 777766666544
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.6 Score=42.48 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=75.4
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCC---CccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGE---NVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~---~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
+.++-..|+|++|-++-++.....|.-++.. .+.+.+|... ....-+-..|.|.
T Consensus 140 ~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~-----------------------~~~~~ew~~l~FS 196 (311)
T KOG1446|consen 140 LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT-----------------------DNDEAEWTDLEFS 196 (311)
T ss_pred cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC-----------------------CCCccceeeeEEc
Confidence 6778889999999855555666567666642 2223333221 0112234688999
Q ss_pred CCCCcEE-EEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 156 KDTGDLY-IADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 156 ~~~G~L~-VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
++ |..+ ++....-++.+|.=.|.+..=.+... ...+.|-+-.+.|||...++-+. .|+|+
T Consensus 197 ~d-GK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~-~~~~~~~~a~ftPds~Fvl~gs~-----------------dg~i~ 257 (311)
T KOG1446|consen 197 PD-GKSILLSTNASFIYLLDAFDGTVKSTFSGYP-NAGNLPLSATFTPDSKFVLSGSD-----------------DGTIH 257 (311)
T ss_pred CC-CCEEEEEeCCCcEEEEEccCCcEeeeEeecc-CCCCcceeEEECCCCcEEEEecC-----------------CCcEE
Confidence 85 6554 45444447778766664322222221 23445668888999998777543 46777
Q ss_pred EEeCCCCcEEEecCC
Q 039124 235 RYDPPTKSNSYCVRW 249 (259)
Q Consensus 235 rydp~tg~~~vl~~~ 249 (259)
-|+.+||+..-..++
T Consensus 258 vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 258 VWNLETGKKVAVLRG 272 (311)
T ss_pred EEEcCCCcEeeEecC
Confidence 777776654443333
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.58 Score=44.45 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=55.2
Q ss_pred eEEEcCCCC-EEEEEcCC--CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 84 SLEFDGLGR-GPYTGLAD--GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 84 ~ia~D~~G~-~~yt~~~~--G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
+++|.++|+ ++|++..+ ..|++++..++....+ +. ..+.-...+|.++ |+
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-----------~~---------------~~g~~~~~~~SpD-G~ 260 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-----------AS---------------FRGINGAPSFSPD-GR 260 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-----------cc---------------CCCCccCceECCC-CC
Confidence 568989887 45565443 4688888765522211 10 0111235688885 65
Q ss_pred -EEEE-eCC--CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEe
Q 039124 161 -LYIA-DAY--YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFT 209 (259)
Q Consensus 161 -L~Va-D~~--~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfT 209 (259)
|+++ +.. ..|+.++.++++.+.+... .+ .....++++||+ |+|+
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~-~~----~~~~~~~spDG~~l~f~ 309 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNH-FG----IDTEPTWAPDGKSIYFT 309 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccC-CC----CccceEECCCCCEEEEE
Confidence 5443 322 2399999998877666432 11 234578899997 6665
|
|
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.026 Score=35.08 Aligned_cols=39 Identities=18% Similarity=0.070 Sum_probs=31.8
Q ss_pred EEccCCCCCceeEEEcCC-CCEEEEEcCCCeEEEEeCCCc
Q 039124 73 LEFVDEVFGPESLEFDGL-GRGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 73 ~l~~~~l~gPE~ia~D~~-G~~~yt~~~~G~I~ri~~~~~ 111 (259)
.+....+..|.++++|+. +.+||++...+.|.+.+-++.
T Consensus 2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 355667999999999994 568889999999999887654
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.92 Score=43.21 Aligned_cols=117 Identities=12% Similarity=0.083 Sum_probs=66.1
Q ss_pred eeEEEcCCCC-EEEEEcCC--CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 83 ESLEFDGLGR-GPYTGLAD--GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 83 E~ia~D~~G~-~~yt~~~~--G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
.+++|.++|+ +.|+...+ ..|+.++.+++..... . ...+.-...++.++ |
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-----------~---------------~~~~~~~~~~~SPD-G 254 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-----------A---------------SFPRHNGAPAFSPD-G 254 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-----------c---------------CCCCCcCCeEECCC-C
Confidence 4789999986 44665433 3577777655421110 0 00111224688985 6
Q ss_pred c-EEEEeCCC---ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 160 D-LYIADAYY---GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 160 ~-L~VaD~~~---Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
+ |+++.... .|+.+|.+++..+.+.... . ........|||+ |+|+-... ..-+||
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~-~----~~~~~~wSPDG~~I~f~s~~~---------------g~~~Iy 314 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-S----NNTEPTWFPDSQNLAYTSDQA---------------GRPQVY 314 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEccCCC-C----CcCceEECCCCCEEEEEeCCC---------------CCceEE
Confidence 5 54442222 4899999988777665321 1 245678899998 65543211 112577
Q ss_pred EEeCCCCcEEEe
Q 039124 235 RYDPPTKSNSYC 246 (259)
Q Consensus 235 rydp~tg~~~vl 246 (259)
++|.++++.+.+
T Consensus 315 ~~d~~~g~~~~l 326 (429)
T PRK03629 315 KVNINGGAPQRI 326 (429)
T ss_pred EEECCCCCeEEe
Confidence 777766665554
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.48 Score=45.56 Aligned_cols=107 Identities=14% Similarity=0.181 Sum_probs=69.8
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.+...+--+++|-++|..+.++..|+.|..|+.......... ..........++|.
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~------------------------l~gH~~~v~~~~f~ 255 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKT------------------------LKGHSTYVTSVAFS 255 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEE------------------------ecCCCCceEEEEec
Confidence 444566668999999998888999999988887322111100 01112234789999
Q ss_pred CCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 156 KDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 156 ~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
++ |+++++-.+.+ +...|..+++......... ...+.+++.+||+++.+-+
T Consensus 256 p~-g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs----~~is~~~f~~d~~~l~s~s 307 (456)
T KOG0266|consen 256 PD-GNLLVSGSDDGTVRIWDVRTGECVRKLKGHS----DGISGLAFSPDGNLLVSAS 307 (456)
T ss_pred CC-CCEEEEecCCCcEEEEeccCCeEEEeeeccC----CceEEEEECCCCCEEEEcC
Confidence 96 78888766666 4445877765332222222 2578999999999888764
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.66 Score=43.78 Aligned_cols=118 Identities=15% Similarity=0.125 Sum_probs=67.0
Q ss_pred eEEEcCCCCEE-EEEcCCC--eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 84 SLEFDGLGRGP-YTGLADG--RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 84 ~ia~D~~G~~~-yt~~~~G--~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
+++|.++|+.+ |+...+| .|+.++.++.....+ + ...+......|.++ |+
T Consensus 247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l--t------------------------~~~~~~~~~~~spD-g~ 299 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV--T------------------------NHPAIDTEPFWGKD-GR 299 (430)
T ss_pred CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEc--c------------------------cCCCCcCCeEECCC-CC
Confidence 57899998755 4554454 688888776532221 0 00111234567775 54
Q ss_pred -EEEE-eCC--CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEEE
Q 039124 161 -LYIA-DAY--YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLLR 235 (259)
Q Consensus 161 -L~Va-D~~--~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~r 235 (259)
|+++ +.. ..|+.++.++++.+.+... + .......+++||+ |+|+.... ..-+|+.
T Consensus 300 ~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~--~---~~~~~~~~Spdg~~i~~~~~~~---------------~~~~l~~ 359 (430)
T PRK00178 300 TLYFTSDRGGKPQIYKVNVNGGRAERVTFV--G---NYNARPRLSADGKTLVMVHRQD---------------GNFHVAA 359 (430)
T ss_pred EEEEEECCCCCceEEEEECCCCCEEEeecC--C---CCccceEECCCCCEEEEEEccC---------------CceEEEE
Confidence 5443 322 2499999888876666422 2 1223467788887 77765321 1124777
Q ss_pred EeCCCCcEEEecC
Q 039124 236 YDPPTKSNSYCVR 248 (259)
Q Consensus 236 ydp~tg~~~vl~~ 248 (259)
+|.++++.+.+.+
T Consensus 360 ~dl~tg~~~~lt~ 372 (430)
T PRK00178 360 QDLQRGSVRILTD 372 (430)
T ss_pred EECCCCCEEEccC
Confidence 7777766665543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.79 Score=42.67 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=64.2
Q ss_pred eEEEcCCCCEE-EEEcCC--CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC-
Q 039124 84 SLEFDGLGRGP-YTGLAD--GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG- 159 (259)
Q Consensus 84 ~ia~D~~G~~~-yt~~~~--G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G- 159 (259)
+++|.++|+.+ |+...+ ..|+.++..++...... ...+.....++.++ |
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~--------------------------~~~~~~~~~~~spD-g~ 246 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA--------------------------SFPGMNGAPAFSPD-GS 246 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee--------------------------cCCCCccceEECCC-CC
Confidence 45788888755 444333 46888887654222110 01122345788885 6
Q ss_pred cEEEEeCC---CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEEE
Q 039124 160 DLYIADAY---YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLLR 235 (259)
Q Consensus 160 ~L~VaD~~---~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~r 235 (259)
.|+++... ..|+.++.+++..+.+... .+ ......+.+||+ |+|+.... ...+||.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~----~~~~~~~s~dg~~l~~~s~~~---------------g~~~iy~ 306 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNG-PG----IDTEPSWSPDGKSIAFTSDRG---------------GSPQIYM 306 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCC-CC----CCCCEEECCCCCEEEEEECCC---------------CCceEEE
Confidence 46554332 2499999988876666432 11 122456778886 65543211 1225777
Q ss_pred EeCCCCcEEEec
Q 039124 236 YDPPTKSNSYCV 247 (259)
Q Consensus 236 ydp~tg~~~vl~ 247 (259)
+|..+++.+.+.
T Consensus 307 ~d~~~~~~~~l~ 318 (417)
T TIGR02800 307 MDADGGEVRRLT 318 (417)
T ss_pred EECCCCCEEEee
Confidence 776666655443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.97 Score=44.14 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=67.7
Q ss_pred EccCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceE
Q 039124 74 EFVDEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGL 152 (259)
Q Consensus 74 l~~~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl 152 (259)
++.|.-..=.+++|++ +++.++++..||.|..|+........ ...+++. ........-..+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~------~~~~~l~------------~L~gH~~~V~~l 131 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ------NISDPIV------------HLQGHTKKVGIV 131 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc------ccCcceE------------EecCCCCcEEEE
Confidence 3444434446899998 78889999999999999865431100 0000000 011112334678
Q ss_pred EEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 153 RFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 153 ~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
+|++..++++++-+..+ |...|.++++..... .+. -...+++++.++|.+.+|-+.
T Consensus 132 ~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l---~~h-~~~V~sla~spdG~lLatgs~ 188 (493)
T PTZ00421 132 SFHPSAMNVLASAGADMVVNVWDVERGKAVEVI---KCH-SDQITSLEWNLDGSLLCTTSK 188 (493)
T ss_pred EeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE---cCC-CCceEEEEEECCCCEEEEecC
Confidence 99985345666545555 555588776432222 221 124788999999987776543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.73 Score=42.89 Aligned_cols=118 Identities=14% Similarity=0.114 Sum_probs=66.3
Q ss_pred eeEEEcCCCCEE-EEEcCCC--eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 83 ESLEFDGLGRGP-YTGLADG--RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 83 E~ia~D~~G~~~-yt~~~~G--~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
.+++|.++|+.+ |+...+| .|+.++.++.....+ . ...+.....++.++ |
T Consensus 237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l-----------~---------------~~~~~~~~~~~s~d-g 289 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL-----------T---------------NGPGIDTEPSWSPD-G 289 (417)
T ss_pred cceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC-----------C---------------CCCCCCCCEEECCC-C
Confidence 357888888744 4544444 588888765422211 0 00011123466774 6
Q ss_pred c-EEEE-eCC--CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 160 D-LYIA-DAY--YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 160 ~-L~Va-D~~--~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
+ |+++ +.. ..|+.++.++++.+.+... + ......++++||+ |+++... .+..+|+
T Consensus 290 ~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~--~---~~~~~~~~spdg~~i~~~~~~---------------~~~~~i~ 349 (417)
T TIGR02800 290 KSIAFTSDRGGSPQIYMMDADGGEVRRLTFR--G---GYNASPSWSPDGDLIAFVHRE---------------GGGFNIA 349 (417)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEEeecC--C---CCccCeEECCCCCEEEEEEcc---------------CCceEEE
Confidence 5 4333 322 2489999888876655422 1 2345678889987 6666542 1234677
Q ss_pred EEeCCCCcEEEec
Q 039124 235 RYDPPTKSNSYCV 247 (259)
Q Consensus 235 rydp~tg~~~vl~ 247 (259)
.+|..+++.+.+.
T Consensus 350 ~~d~~~~~~~~l~ 362 (417)
T TIGR02800 350 VMDLDGGGERVLT 362 (417)
T ss_pred EEeCCCCCeEEcc
Confidence 7777766666554
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.047 Score=49.45 Aligned_cols=62 Identities=16% Similarity=0.340 Sum_probs=46.3
Q ss_pred CcceEEEeCCCCcEEEEeCCC-ceEEEECCC----CeEEEeeecCCCCCccccccEEEcC--CCcEEEecCC
Q 039124 148 RPLGLRFNKDTGDLYIADAYY-GLLVVGSKG----GLATPLATQAGGKPILFANDLDVHK--NGSIFFTDTS 212 (259)
Q Consensus 148 rPlGl~~d~~~G~L~VaD~~~-Gl~~v~~~g----g~~~~l~~~~~g~pl~~~Ndl~vd~--dG~IyfTDss 212 (259)
..-|+++|+ +|+||.++... .|.+.++++ ...+.++. +.+.+.+|+++.+++ +|.+|+....
T Consensus 187 ~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~--d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 187 QSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ--DPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE---CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred CCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEE--cCceeeccceeeeccccCceEEEEECc
Confidence 346999999 59999999876 599999987 33566663 334589999999999 9999998754
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.57 Score=44.52 Aligned_cols=120 Identities=14% Similarity=0.148 Sum_probs=67.3
Q ss_pred eeEEEcCCCCEE-EEEcCCC--eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 83 ESLEFDGLGRGP-YTGLADG--RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 83 E~ia~D~~G~~~-yt~~~~G--~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
.++.|.++|+.+ |++..+| +|+.++.++.....+. . ..+.-...++.++ |
T Consensus 293 ~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt------------------------~--~~~~~~~~~~Spd-G 345 (435)
T PRK05137 293 TSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS------------------------F--GGGRYSTPVWSPR-G 345 (435)
T ss_pred CceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee------------------------c--CCCcccCeEECCC-C
Confidence 357888888744 5554443 5888877654222210 0 0111234567775 5
Q ss_pred cEE-EEeCC---CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 160 DLY-IADAY---YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 160 ~L~-VaD~~---~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
+.+ ++... ..|+.++.+++..+.+... . ...+..+++||+ |||+-.... .....+||
T Consensus 346 ~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~---~---~~~~p~~spDG~~i~~~~~~~~------------~~~~~~L~ 407 (435)
T PRK05137 346 DLIAFTKQGGGQFSIGVMKPDGSGERILTSG---F---LVEGPTWAPNGRVIMFFRQTPG------------SGGAPKLY 407 (435)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEeccCC---C---CCCCCeECCCCCEEEEEEccCC------------CCCcceEE
Confidence 543 33322 2488889887765544322 1 246788999997 666543211 00124799
Q ss_pred EEeCCCCcEEEec
Q 039124 235 RYDPPTKSNSYCV 247 (259)
Q Consensus 235 rydp~tg~~~vl~ 247 (259)
.+|.++++.+.+.
T Consensus 408 ~~dl~g~~~~~l~ 420 (435)
T PRK05137 408 TVDLTGRNEREVP 420 (435)
T ss_pred EEECCCCceEEcc
Confidence 9999876666553
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.83 Score=38.75 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=68.8
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcE
Q 039124 82 PESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDL 161 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L 161 (259)
+-.++++ ++.+|++..+|.|+.+++..+. ..+...... +... .. ........+-.+-. +|.+
T Consensus 115 ~~~~~~~--~~~~~~~~~~g~l~~~d~~tG~-~~w~~~~~~--------~~~~-----~~-~~~~~~~~~~~~~~-~~~v 176 (238)
T PF13360_consen 115 SSSPAVD--GDRLYVGTSSGKLVALDPKTGK-LLWKYPVGE--------PRGS-----SP-ISSFSDINGSPVIS-DGRV 176 (238)
T ss_dssp -SEEEEE--TTEEEEEETCSEEEEEETTTTE-EEEEEESST--------T-SS--------EEEETTEEEEEECC-TTEE
T ss_pred ccCceEe--cCEEEEEeccCcEEEEecCCCc-EEEEeecCC--------CCCC-----cc-eeeecccccceEEE-CCEE
Confidence 3445554 6678888889999999987652 222221100 0000 00 00111122322223 3689
Q ss_pred EEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCC
Q 039124 162 YIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTK 241 (259)
Q Consensus 162 ~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg 241 (259)
|++.....++.+|.++|+.. +..... ....+....++.+|+++. .|+|+.+|++||
T Consensus 177 ~~~~~~g~~~~~d~~tg~~~-w~~~~~-----~~~~~~~~~~~~l~~~~~------------------~~~l~~~d~~tG 232 (238)
T PF13360_consen 177 YVSSGDGRVVAVDLATGEKL-WSKPIS-----GIYSLPSVDGGTLYVTSS------------------DGRLYALDLKTG 232 (238)
T ss_dssp EEECCTSSEEEEETTTTEEE-EEECSS------ECECEECCCTEEEEEET------------------TTEEEEEETTTT
T ss_pred EEEcCCCeEEEEECCCCCEE-EEecCC-----CccCCceeeCCEEEEEeC------------------CCEEEEEECCCC
Confidence 98877666888899999633 432222 233434456777888872 368999999999
Q ss_pred cEE
Q 039124 242 SNS 244 (259)
Q Consensus 242 ~~~ 244 (259)
++.
T Consensus 233 ~~~ 235 (238)
T PF13360_consen 233 KVV 235 (238)
T ss_dssp EEE
T ss_pred CEE
Confidence 764
|
... |
| >PF14339 DUF4394: Domain of unknown function (DUF4394) | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.14 Score=45.11 Aligned_cols=91 Identities=21% Similarity=0.264 Sum_probs=59.5
Q ss_pred CCcceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCc-cccccEEEcCC-CcEEEecCCCCCCcccceeee
Q 039124 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPI-LFANDLDVHKN-GSIFFTDTSKRYNRVDHFFIL 224 (259)
Q Consensus 147 grPlGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl-~~~Ndl~vd~d-G~IyfTDss~~~~~~~~~~~~ 224 (259)
.+-.||.|.+.+|.||-.....+|+.+|+.+|..+.+....-...+ ...-++++.|- .+|.+-
T Consensus 27 e~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvv--------------- 91 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVV--------------- 91 (236)
T ss_pred CeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEE---------------
Confidence 3457999999899999876667799999999987766311111111 11234455442 223322
Q ss_pred eccCCCceEEEEeCCCCcEEEecCCCCCcce
Q 039124 225 LEGESTGRLLRYDPPTKSNSYCVRWLGFSKW 255 (259)
Q Consensus 225 ~e~~~~GrL~rydp~tg~~~vl~~~L~~pNG 255 (259)
..+|.=+|++|+||.+...-..|.++-|
T Consensus 92 ---s~~GqNlR~npdtGav~~~Dg~L~y~~g 119 (236)
T PF14339_consen 92 ---SNTGQNLRLNPDTGAVTIVDGNLAYAAG 119 (236)
T ss_pred ---ccCCcEEEECCCCCCceeccCccccCCC
Confidence 2368899999999986666667887654
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.27 Score=46.01 Aligned_cols=87 Identities=18% Similarity=0.274 Sum_probs=50.4
Q ss_pred CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEEeCCCce
Q 039124 91 GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGL 170 (259)
Q Consensus 91 G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~VaD~~~Gl 170 (259)
++.+|+...+|.++.++...+. .. |... .+.+..+.++ +|.+|+++....+
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~-~~------------------------W~~~--~~~~~~~~~~--~~~vy~~~~~g~l 306 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQ-IV------------------------WKRE--YGSVNDFAVD--GGRIYLVDQNDRV 306 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCC-EE------------------------Eeec--CCCccCcEEE--CCEEEEEcCCCeE
Confidence 3457777788899999876542 11 1111 1222334454 4799999887779
Q ss_pred EEEECCCCeEEEeeec-CCCCCccccccEEEcCCCcEEEecC
Q 039124 171 LVVGSKGGLATPLATQ-AGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 171 ~~v~~~gg~~~~l~~~-~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
+.+|.++|+ ..+... ..+.. ....++ -+|.||+.+.
T Consensus 307 ~ald~~tG~-~~W~~~~~~~~~---~~sp~v-~~g~l~v~~~ 343 (394)
T PRK11138 307 YALDTRGGV-ELWSQSDLLHRL---LTAPVL-YNGYLVVGDS 343 (394)
T ss_pred EEEECCCCc-EEEcccccCCCc---ccCCEE-ECCEEEEEeC
Confidence 999999885 333222 12211 122233 3677888764
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.85 Score=42.23 Aligned_cols=152 Identities=19% Similarity=0.157 Sum_probs=83.2
Q ss_pred CCC-cccCCCeEEccCCCCCceeEEEcCCCCEEEEEcCC-CeEEE--EeCCCccEEEEEEeecCccccccccCccccccc
Q 039124 63 DNL-SRLVTGKLEFVDEVFGPESLEFDGLGRGPYTGLAD-GRIVR--WMGENVGWETFAIVTSNWSEKLCARGVDSTTAK 138 (259)
Q Consensus 63 ~~n-~~L~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~-G~I~r--i~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~ 138 (259)
++| .+|+..-..... -..|-.+++|++|+.+|++... |.|.. +..+|..+......... ++.
T Consensus 72 D~~~G~Lt~ln~~~~~-g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~-------g~~------ 137 (346)
T COG2706 72 DPDDGRLTFLNRQTLP-GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHT-------GSG------ 137 (346)
T ss_pred cCCCCeEEEeeccccC-CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecC-------CCC------
Confidence 444 355554433332 3677899999999989988765 44433 33444322211111000 000
Q ss_pred cccccCcCCCcceEEEeCCCC-cEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCC
Q 039124 139 QWKHEKWCGRPLGLRFNKDTG-DLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRY 215 (259)
Q Consensus 139 ~~~~~~~~grPlGl~~d~~~G-~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~ 215 (259)
...++.-..++-..++++ | -|+++|-..- ++.++.+-|..+... +..=+|-..|.-|++.|+|. .|+..
T Consensus 138 -p~~rQ~~~h~H~a~~tP~-~~~l~v~DLG~Dri~~y~~~dg~L~~~~-~~~v~~G~GPRHi~FHpn~k~aY~v~----- 209 (346)
T COG2706 138 -PHERQESPHVHSANFTPD-GRYLVVPDLGTDRIFLYDLDDGKLTPAD-PAEVKPGAGPRHIVFHPNGKYAYLVN----- 209 (346)
T ss_pred -CCccccCCccceeeeCCC-CCEEEEeecCCceEEEEEcccCcccccc-ccccCCCCCcceEEEcCCCcEEEEEe-----
Confidence 011222334677788995 6 5667886543 555554444444332 22224556799999999998 55532
Q ss_pred CcccceeeeeccCCCceEEEEeCCCCcEEEe
Q 039124 216 NRVDHFFILLEGESTGRLLRYDPPTKSNSYC 246 (259)
Q Consensus 216 ~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl 246 (259)
|-+.+=-+|.||+.+|+.+.|
T Consensus 210 ----------EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 210 ----------ELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred ----------ccCCEEEEEEEcCCCceEEEe
Confidence 223333577888877776655
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.55 Score=41.75 Aligned_cols=125 Identities=16% Similarity=0.078 Sum_probs=59.6
Q ss_pred eEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-EEEEEEeecCccccccccCccccccccccccC-cCCCc
Q 039124 72 KLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVG-WETFAIVTSNWSEKLCARGVDSTTAKQWKHEK-WCGRP 149 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~-~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~grP 149 (259)
+++...+..-||+|++-.+|..+.++-.+++++.++.+... ....+.. ++. . ..... ..-.-
T Consensus 57 r~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~-----~~~-~----------l~~~~~~N~G~ 120 (248)
T PF06977_consen 57 RRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADV-----QKI-S----------LGFPNKGNKGF 120 (248)
T ss_dssp EEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEE-----EEE-E-------------S---SS--
T ss_pred EEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhc-----eEE-e----------cccccCCCcce
Confidence 33444557789999997667655556568888887663220 0000000 000 0 00000 01112
Q ss_pred ceEEEeCCCCcEEEEeCC--CceEEEEC--CCCeEEEeee-c--CCCCCccccccEEEcCC-CcEEEecCC
Q 039124 150 LGLRFNKDTGDLYIADAY--YGLLVVGS--KGGLATPLAT-Q--AGGKPILFANDLDVHKN-GSIFFTDTS 212 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~--~Gl~~v~~--~gg~~~~l~~-~--~~g~pl~~~Ndl~vd~d-G~IyfTDss 212 (259)
-||++|+.+++|||+--. .+|+.++. .......... . .....+.-+.++.+++. |++|+-...
T Consensus 121 EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~e 191 (248)
T PF06977_consen 121 EGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDE 191 (248)
T ss_dssp EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECC
Confidence 499999987899987433 35888875 2222222211 1 12334556789999985 678876443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=95.51 E-value=1.2 Score=37.00 Aligned_cols=99 Identities=13% Similarity=0.118 Sum_probs=61.8
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEE
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLY 162 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~ 162 (259)
.++.|.++++.++++..+|.|..|+........ ......+....+.+.++ +.++
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~-------------------------~~~~~~~~i~~~~~~~~-~~~~ 108 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVR-------------------------TLTGHTSYVSSVAFSPD-GRIL 108 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccceE-------------------------EEeccCCcEEEEEEcCC-CCEE
Confidence 488898888889999999999999876531110 00111234678889884 7887
Q ss_pred EEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 163 IADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 163 VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
++....| +..++..+++........ -.....+++++++.++++-+
T Consensus 109 ~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~ 154 (289)
T cd00200 109 SSSSRDKTIKVWDVETGKCLTTLRGH----TDWVNSVAFSPDGTFVASSS 154 (289)
T ss_pred EEecCCCeEEEEECCCcEEEEEeccC----CCcEEEEEEcCcCCEEEEEc
Confidence 7766344 677787755322222211 12467788888777555543
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.58 Score=42.97 Aligned_cols=89 Identities=21% Similarity=0.241 Sum_probs=53.2
Q ss_pred cceEEEeCCCCcEEEEeCCC------c-eEEEECCCCeEEEeeec--C-------CC-CCccccccEEEcCCCc-EEEec
Q 039124 149 PLGLRFNKDTGDLYIADAYY------G-LLVVGSKGGLATPLATQ--A-------GG-KPILFANDLDVHKNGS-IFFTD 210 (259)
Q Consensus 149 PlGl~~d~~~G~L~VaD~~~------G-l~~v~~~gg~~~~l~~~--~-------~g-~pl~~~Ndl~vd~dG~-IyfTD 210 (259)
+-||++.+ +|.+||++-+. . |++++.+|...+.+... . .+ .+=.-+-+|++.+||+ +|+.-
T Consensus 87 ~Egi~~~~-~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPP-DGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEec-CCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 34999976 59999998776 4 99999886544444211 1 11 1233567999999999 77654
Q ss_pred CCCCCCcccceeeeeccCCCceEEEEeCCC
Q 039124 211 TSKRYNRVDHFFILLEGESTGRLLRYDPPT 240 (259)
Q Consensus 211 ss~~~~~~~~~~~~~e~~~~GrL~rydp~t 240 (259)
-+...+... ..-......-|+++||+.+
T Consensus 166 E~~l~~d~~--~~~~~~~~~~ri~~~d~~~ 193 (326)
T PF13449_consen 166 ESPLKQDGP--RANPDNGSPLRILRYDPKT 193 (326)
T ss_pred CccccCCCc--ccccccCceEEEEEecCCC
Confidence 443221100 0000112235889999875
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.6 Score=39.64 Aligned_cols=107 Identities=15% Similarity=0.191 Sum_probs=59.4
Q ss_pred CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEEeCCCce
Q 039124 91 GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGL 170 (259)
Q Consensus 91 G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~VaD~~~Gl 170 (259)
++.+|+...++.|+.++...+. ..+... +. ...... ...+ ++.+||+.....|
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~-~~W~~~--------~~-------------~~~~~~---~~~~--~~~v~v~~~~~~l 88 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGK-VLWRFD--------LP-------------GPISGA---PVVD--GGRVYVGTSDGSL 88 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSE-EEEEEE--------CS-------------SCGGSG---EEEE--TTEEEEEETTSEE
T ss_pred CCEEEEEcCCCEEEEEECCCCC-EEEEee--------cc-------------ccccce---eeec--ccccccccceeee
Confidence 4458888899999999985542 222111 11 000111 2333 4789988766679
Q ss_pred EEEECCCCeEEEeeec--CCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcE
Q 039124 171 LVVGSKGGLATPLATQ--AGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSN 243 (259)
Q Consensus 171 ~~v~~~gg~~~~l~~~--~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~ 243 (259)
+.+|..+|+...-... .+..++...-..+++ ++.+|+..+ .|.|+.+|++||+.
T Consensus 89 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------------~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 89 YALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTS------------------SGKLVALDPKTGKL 144 (238)
T ss_dssp EEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEET------------------CSEEEEEETTTTEE
T ss_pred EecccCCcceeeeeccccccccccccccCceEe-cCEEEEEec------------------cCcEEEEecCCCcE
Confidence 9999777764322111 122223334445555 445777664 34677777777755
|
... |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=95.32 E-value=1.4 Score=36.59 Aligned_cols=101 Identities=16% Similarity=0.092 Sum_probs=62.0
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
....++.|.+++.+++++..+|.|..|+........ . .....+....++++++ +
T Consensus 94 ~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~------------------------~~~~~~~i~~~~~~~~-~ 147 (289)
T cd00200 94 SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT-T------------------------LRGHTDWVNSVAFSPD-G 147 (289)
T ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE-E------------------------eccCCCcEEEEEEcCc-C
Confidence 467789999888877777779999999876431110 0 0111234578899984 7
Q ss_pred cEEEEeC-CCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEec
Q 039124 160 DLYIADA-YYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTD 210 (259)
Q Consensus 160 ~L~VaD~-~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTD 210 (259)
.++++.. ...+..+|..+++........ -...+.+++.++|+ ++++.
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~ 196 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKCVATLTGH----TGEVNSVAFSPDGEKLLSSS 196 (289)
T ss_pred CEEEEEcCCCcEEEEEccccccceeEecC----ccccceEEECCCcCEEEEec
Confidence 7776655 334677787655322222211 12467888888884 55544
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.7 Score=41.22 Aligned_cols=94 Identities=22% Similarity=0.321 Sum_probs=61.8
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc-ceEEEeCCCCcE
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP-LGLRFNKDTGDL 161 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP-lGl~~d~~~G~L 161 (259)
-++.|..+|+..||+..||.+..|+.... .|.- .+.+ ..| +.+..+++-++|
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~---------------~~qR----------~~~~--~spVn~vvlhpnQteL 139 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSL---------------SCQR----------NYQH--NSPVNTVVLHPNQTEL 139 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCc---------------ccch----------hccC--CCCcceEEecCCcceE
Confidence 56788889999999999999988886432 1320 0111 123 467778765899
Q ss_pred EEEeCCCceEEEECCCCeEE-EeeecCCCCCccccccEEEcCCCcEE
Q 039124 162 YIADAYYGLLVVGSKGGLAT-PLATQAGGKPILFANDLDVHKNGSIF 207 (259)
Q Consensus 162 ~VaD~~~Gl~~v~~~gg~~~-~l~~~~~g~pl~~~Ndl~vd~dG~Iy 207 (259)
+++|....|...|....... .++.+ ++ .+.-.++|++||...
T Consensus 140 is~dqsg~irvWDl~~~~c~~~liPe-~~---~~i~sl~v~~dgsml 182 (311)
T KOG0315|consen 140 ISGDQSGNIRVWDLGENSCTHELIPE-DD---TSIQSLTVMPDGSML 182 (311)
T ss_pred EeecCCCcEEEEEccCCccccccCCC-CC---cceeeEEEcCCCcEE
Confidence 99998777888887655322 23322 22 456777888777643
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.25 E-value=1.3 Score=42.64 Aligned_cols=114 Identities=17% Similarity=0.184 Sum_probs=74.4
Q ss_pred eEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcce
Q 039124 72 KLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLG 151 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlG 151 (259)
.+.+.|.-..--+++|.++|+++.++..|+.|.-|+........ . + ...-+.-.+
T Consensus 239 ~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~-~----------------------l--~~hs~~is~ 293 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR-K----------------------L--KGHSDGISG 293 (456)
T ss_pred EEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE-e----------------------e--eccCCceEE
Confidence 34455666666899999999999999999999999987641110 0 1 111223468
Q ss_pred EEEeCCCCcEEEEeCCCceEEE-ECCCCeEEEeeecCCCCCcc-ccccEEEcCCCcEEEecCC
Q 039124 152 LRFNKDTGDLYIADAYYGLLVV-GSKGGLATPLATQAGGKPIL-FANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 152 l~~d~~~G~L~VaD~~~Gl~~v-~~~gg~~~~l~~~~~g~pl~-~~Ndl~vd~dG~IyfTDss 212 (259)
++|.+ +|+++++-.+.|.++| |..++... +.....+..-. -.+-+.++++|...++-.-
T Consensus 294 ~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~ 354 (456)
T KOG0266|consen 294 LAFSP-DGNLLVSASYDGTIRVWDLETGSKL-CLKLLSGAENSAPVTSVQFSPNGKYLLSASL 354 (456)
T ss_pred EEECC-CCCEEEEcCCCccEEEEECCCCcee-eeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence 99999 4888887777785554 98888633 11222221111 4578888899986665443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.31 Score=45.58 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=42.0
Q ss_pred EEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc-ceEEEeCCCCcEEE
Q 039124 85 LEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP-LGLRFNKDTGDLYI 163 (259)
Q Consensus 85 ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP-lGl~~d~~~G~L~V 163 (259)
++++ ++.+|+...+|.|+.++.+.+. ..+...... + . + .+. .....+. -++.++ ++.+||
T Consensus 65 Pvv~--~~~vy~~~~~g~l~ald~~tG~-~~W~~~~~~--~-~---~-------~~~-~~~~~~~~~~~~v~--~~~v~v 125 (394)
T PRK11138 65 PAVA--YNKVYAADRAGLVKALDADTGK-EIWSVDLSE--K-D---G-------WFS-KNKSALLSGGVTVA--GGKVYI 125 (394)
T ss_pred cEEE--CCEEEEECCCCeEEEEECCCCc-EeeEEcCCC--c-c---c-------ccc-cccccccccccEEE--CCEEEE
Confidence 4553 4458999899999999976542 222211000 0 0 0 000 0000011 135555 378999
Q ss_pred EeCCCceEEEECCCCe
Q 039124 164 ADAYYGLLVVGSKGGL 179 (259)
Q Consensus 164 aD~~~Gl~~v~~~gg~ 179 (259)
.+....|+.+|.++|+
T Consensus 126 ~~~~g~l~ald~~tG~ 141 (394)
T PRK11138 126 GSEKGQVYALNAEDGE 141 (394)
T ss_pred EcCCCEEEEEECCCCC
Confidence 8766669999998886
|
|
| >PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.064 Score=47.05 Aligned_cols=141 Identities=17% Similarity=0.100 Sum_probs=68.3
Q ss_pred CCcccCCCeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCcccccccccccc
Q 039124 64 NLSRLVTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHE 143 (259)
Q Consensus 64 ~n~~L~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~ 143 (259)
-|+.+..++.|..+.-..=..|.+|+.|. +|+-..+|+++|..+....-..++.. ..+++. .
T Consensus 65 ~~~~~~~~~~Ig~g~W~~F~~i~~d~~G~-LYaV~~~G~lyR~~~~~~~~~~W~~~---~~~~iG--------------~ 126 (229)
T PF14517_consen 65 GNTWDSGSKQIGDGGWNSFKFIFFDPTGV-LYAVTPDGKLYRHPRPTNGSDNWIGG---SGKKIG--------------G 126 (229)
T ss_dssp T--HHHH-EEEE-S-GGG-SEEEE-TTS--EEEEETT-EEEEES---STT--HHH----HSEEEE---------------
T ss_pred cccccccCcccccCcccceeEEEecCCcc-EEEeccccceeeccCCCccCcchhhc---cceecc--------------c
Confidence 45556788999998333334999999987 88888899999987643311111100 000010 1
Q ss_pred CcCCCcceEEEeCCCCcEEEEeCCCceEEE-ECCCCeEEEeee---cCCCCCccccccEEEcCCCcEEEecCCCCCCccc
Q 039124 144 KWCGRPLGLRFNKDTGDLYIADAYYGLLVV-GSKGGLATPLAT---QAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVD 219 (259)
Q Consensus 144 ~~~grPlGl~~d~~~G~L~VaD~~~Gl~~v-~~~gg~~~~l~~---~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~ 219 (259)
..+....-+-+++ +|.||+.+....+++- .|+++. ..+.+ .+.+.....+--|...++|+||..++
T Consensus 127 ~GW~~f~~vfa~~-~GvLY~i~~dg~~~~~~~p~~~~-~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~~-------- 196 (229)
T PF14517_consen 127 TGWNDFDAVFAGP-NGVLYAITPDGRLYRRYRPDGGS-DRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVKS-------- 196 (229)
T ss_dssp SSGGGEEEEEE-T-TS-EEEEETTE-EEEE---SSTT---HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-E--------
T ss_pred CCCccceEEEeCC-CccEEEEcCCCceEEeCCCCCCC-CccccccceeccCCcccceEEeeCCCCcEEEEec--------
Confidence 1223345677888 5999988865446666 455432 11211 11122223466788889999998854
Q ss_pred ceeeeeccCCCceEEEEeCCCCc
Q 039124 220 HFFILLEGESTGRLLRYDPPTKS 242 (259)
Q Consensus 220 ~~~~~~e~~~~GrL~rydp~tg~ 242 (259)
.|+|||+.+.+..
T Consensus 197 ----------~G~lyr~~~p~~~ 209 (229)
T PF14517_consen 197 ----------NGKLYRGRPPQNG 209 (229)
T ss_dssp ----------TTEEEEES---ST
T ss_pred ----------CCEEeccCCcccC
Confidence 4789999887643
|
|
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.087 Score=33.60 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=28.5
Q ss_pred CcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEE-EecCCCCCcceeEE
Q 039124 204 GSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNS-YCVRWLGFSKWSTI 258 (259)
Q Consensus 204 G~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~-vl~~~L~~pNGval 258 (259)
|+||+||.+.+ ..+.+-+.+....+ ++-++|..|+|||+
T Consensus 1 ~~iYWtD~~~~----------------~~I~~a~~dGs~~~~vi~~~l~~P~giaV 40 (42)
T PF00058_consen 1 GKIYWTDWSQD----------------PSIERANLDGSNRRTVISDDLQHPEGIAV 40 (42)
T ss_dssp TEEEEEETTTT----------------EEEEEEETTSTSEEEEEESSTSSEEEEEE
T ss_pred CEEEEEECCCC----------------cEEEEEECCCCCeEEEEECCCCCcCEEEE
Confidence 57999998742 26777777644444 45578999999986
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=2 Score=40.86 Aligned_cols=94 Identities=18% Similarity=0.226 Sum_probs=54.7
Q ss_pred eEEEcCCCCEE-EEEcCC--CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 84 SLEFDGLGRGP-YTGLAD--GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 84 ~ia~D~~G~~~-yt~~~~--G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
+++|.++|+.+ |++..+ ..|+.++..++....+. ...+.-...++.++ |+
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~--------------------------~~~g~~~~~~~SPD-G~ 252 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA--------------------------NFKGSNSAPAWSPD-GR 252 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee--------------------------cCCCCccceEECCC-CC
Confidence 56898998744 555443 35888887655221110 01122346788885 64
Q ss_pred -EEEE-e--CCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEe
Q 039124 161 -LYIA-D--AYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFT 209 (259)
Q Consensus 161 -L~Va-D--~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfT 209 (259)
|+++ + ....|+.++.+++..+.+... .+ .......++||+ |+|+
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~----~~~~~~wSpDG~~l~f~ 301 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQS-SG----IDTEPFFSPDGRSIYFT 301 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCC-CC----CCcCeEEcCCCCEEEEE
Confidence 5443 2 223489999888776665432 11 234567899997 6665
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=94.93 E-value=1.1 Score=42.02 Aligned_cols=108 Identities=13% Similarity=0.084 Sum_probs=58.0
Q ss_pred CCceeEEEcCCCCEEEEEc-CCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 80 FGPESLEFDGLGRGPYTGL-ADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~-~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
..|+++++.++|+.+|++. ..+.+..++..... ...... .+. ........|+.+|...+.
T Consensus 78 ~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle--~v~~I~------~~~----------~~~~~~~~Rv~aIv~s~~- 138 (369)
T PF02239_consen 78 GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE--PVKTIP------TGG----------MPVDGPESRVAAIVASPG- 138 (369)
T ss_dssp SEEEEEEE--TTTEEEEEEEETTEEEEEETTT----EEEEEE--------E----------E-TTTS---EEEEEE-SS-
T ss_pred CCcceEEEcCCCCEEEEEecCCCceeEecccccc--ceeecc------ccc----------ccccccCCCceeEEecCC-
Confidence 6899999999999889876 57889999987642 211100 000 000113456778876663
Q ss_pred CcEEE-EeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 159 GDLYI-ADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 159 G~L~V-aD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
...|| +--..+ ++.||..... ......++ .-.+|.|..++++|+-|+.
T Consensus 139 ~~~fVv~lkd~~~I~vVdy~d~~-~~~~~~i~--~g~~~~D~~~dpdgry~~v 188 (369)
T PF02239_consen 139 RPEFVVNLKDTGEIWVVDYSDPK-NLKVTTIK--VGRFPHDGGFDPDGRYFLV 188 (369)
T ss_dssp SSEEEEEETTTTEEEEEETTTSS-CEEEEEEE----TTEEEEEE-TTSSEEEE
T ss_pred CCEEEEEEccCCeEEEEEecccc-ccceeeec--ccccccccccCcccceeee
Confidence 55454 434334 8888855432 11112111 1248999999999996554
|
... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.61 Score=43.10 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=37.9
Q ss_pred CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEEeCCCce
Q 039124 91 GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGL 170 (259)
Q Consensus 91 G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~VaD~~~Gl 170 (259)
++.+|+...+|.++.++...+. .. |..+ .+......++ ++.+|+++....+
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~-~~------------------------W~~~--~~~~~~p~~~--~~~vyv~~~~G~l 291 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGR-VL------------------------WKRD--ASSYQGPAVD--DNRLYVTDADGVV 291 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCc-EE------------------------Eeec--cCCccCceEe--CCEEEEECCCCeE
Confidence 3457887788888888875541 11 1111 1122334444 4789998876669
Q ss_pred EEEECCCCe
Q 039124 171 LVVGSKGGL 179 (259)
Q Consensus 171 ~~v~~~gg~ 179 (259)
+.+|.++|+
T Consensus 292 ~~~d~~tG~ 300 (377)
T TIGR03300 292 VALDRRSGS 300 (377)
T ss_pred EEEECCCCc
Confidence 999998885
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=94.87 E-value=1 Score=41.37 Aligned_cols=137 Identities=17% Similarity=0.122 Sum_probs=77.7
Q ss_pred CceeEEEcCCCCEEEEEcCC------CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 81 GPESLEFDGLGRGPYTGLAD------GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~------G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
-+|+|++.++|.+|+++=.+ .+|++++.++.....+..+...... -. + ..........-||++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~--~~-~--------~~~~~~N~G~E~la~ 154 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPD--AN-G--------TSGRRNNRGFEGLAV 154 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccc--cC-c--------cccccCCCCeEEEEE
Confidence 89999997788866666667 7999999886632333222110000 00 0 001112223448999
Q ss_pred eCCCCc-EEEEe-------CC---------CceEEEECCC-Ce-EEEeeecCCC----CCccccccEEEcCCCcEEEecC
Q 039124 155 NKDTGD-LYIAD-------AY---------YGLLVVGSKG-GL-ATPLATQAGG----KPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 155 d~~~G~-L~VaD-------~~---------~Gl~~v~~~g-g~-~~~l~~~~~g----~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
.++ |. ||++- .. ..|+++++.+ +. ...++=..+. ..-..+-|++..+||++++=+-
T Consensus 155 ~~d-G~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER 233 (326)
T PF13449_consen 155 SPD-GRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER 233 (326)
T ss_pred CCC-CCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence 995 77 88762 11 1266777764 21 2223222221 1345678899999999998775
Q ss_pred CCCCCcccceeeeeccCCCceEEEEeCC
Q 039124 212 SKRYNRVDHFFILLEGESTGRLLRYDPP 239 (259)
Q Consensus 212 s~~~~~~~~~~~~~e~~~~GrL~rydp~ 239 (259)
..... .....|||++|..
T Consensus 234 ~~~~~----------~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 234 DFSPG----------TGNYKRIYRVDLS 251 (326)
T ss_pred cCCCC----------ccceEEEEEEEcc
Confidence 52211 2345678888864
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=94.79 E-value=1.1 Score=41.99 Aligned_cols=71 Identities=24% Similarity=0.257 Sum_probs=47.1
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc-
Q 039124 82 PESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD- 160 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~- 160 (259)
+-++++.++|+.+|+...+|.|-.|+....... .....|..|.|+++.++ |+
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v--------------------------~~i~~G~~~~~i~~s~D-G~~ 91 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVV--------------------------ATIKVGGNPRGIAVSPD-GKY 91 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEE--------------------------EEEE-SSEEEEEEE--T-TTE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEE--------------------------EEEecCCCcceEEEcCC-CCE
Confidence 556788899999999999999999998766311 11244677999999995 65
Q ss_pred EEEEeCCCc-eEEEECCCCe
Q 039124 161 LYIADAYYG-LLVVGSKGGL 179 (259)
Q Consensus 161 L~VaD~~~G-l~~v~~~gg~ 179 (259)
+||++...+ +..+|.++.+
T Consensus 92 ~~v~n~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 92 VYVANYEPGTVSVIDAETLE 111 (369)
T ss_dssp EEEEEEETTEEEEEETTT--
T ss_pred EEEEecCCCceeEecccccc
Confidence 566665444 7777987754
|
... |
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.71 E-value=1.4 Score=44.75 Aligned_cols=101 Identities=19% Similarity=0.319 Sum_probs=71.6
Q ss_pred CCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc-cEEEEEEeecCccccccccCccccccccccccCcCCCc---ceEE
Q 039124 78 EVFGPESLEFDGLGRGPYTGLADGRIVRWMGENV-GWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP---LGLR 153 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~-~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP---lGl~ 153 (259)
.-.+--++.|...|+.++++..||+|.-|+.... .+++|.. ..| ..++
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~----------------------------P~p~Qfscva 442 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS----------------------------PEPIQFSCVA 442 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC----------------------------CCceeeeEEE
Confidence 3455566778788999999999999999987653 2444421 122 3689
Q ss_pred EeCCCCcEEEEeCCC--ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 154 FNKDTGDLYIADAYY--GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 154 ~d~~~G~L~VaD~~~--Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
+|+ .|+|.+|-+.. -|+.++.+||+.--+.+.-+|. ..+|.++++|.+..|-|
T Consensus 443 vD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgP----Vs~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 443 VDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGP----VSGLSFSPDGSLLASGS 497 (893)
T ss_pred EcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCc----ceeeEEccccCeEEecc
Confidence 999 59987765443 4888899999755555555552 56889999999887765
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=1.9 Score=40.98 Aligned_cols=95 Identities=22% Similarity=0.328 Sum_probs=54.0
Q ss_pred eeEEEcCCCC-EEEEEcCC--CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 83 ESLEFDGLGR-GPYTGLAD--GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 83 E~ia~D~~G~-~~yt~~~~--G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
.+++|.++|+ ++|++..+ ..|+.++..+.....+. ...+.-...+|.++ |
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~--------------------------~~~g~~~~~~wSPD-G 259 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA--------------------------SFRGHNGAPAFSPD-G 259 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe--------------------------cCCCccCceeECCC-C
Confidence 5679999997 44555443 46888887654211110 00111124688885 7
Q ss_pred c-EEEEeCCC---ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEe
Q 039124 160 D-LYIADAYY---GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFT 209 (259)
Q Consensus 160 ~-L~VaD~~~---Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfT 209 (259)
+ |+++-... .|+.+|.+++..+.+... .+ .....+.++||+ |+|+
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~----~~~~~~wSpDG~~i~f~ 309 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPSQLTSG-AG----NNTEPSWSPDGQSILFT 309 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeEeeccC-CC----CcCCEEECCCCCEEEEE
Confidence 5 44432222 388889888876666432 11 234677777876 5554
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.75 Score=42.12 Aligned_cols=100 Identities=19% Similarity=0.159 Sum_probs=60.0
Q ss_pred EEcCCCCEEEEE-----cCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC-
Q 039124 86 EFDGLGRGPYTG-----LADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG- 159 (259)
Q Consensus 86 a~D~~G~~~yt~-----~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G- 159 (259)
+|.++|+++||. ...|.|-.++.... +... .+ | ...+=.|+-|.+.++ |
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~-~~ri-----------~E----------~--~s~GIGPHel~l~pD-G~ 111 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARG-YRRI-----------GE----------F--PSHGIGPHELLLMPD-GE 111 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCC-cEEE-----------eE----------e--cCCCcChhhEEEcCC-CC
Confidence 567899999996 34677888888733 2221 10 1 122334999999995 7
Q ss_pred cEEEEeCC------CceEEEECCCCeEEEe-eecC-----------CCCCccccccEEEcCCCcEEEec
Q 039124 160 DLYIADAY------YGLLVVGSKGGLATPL-ATQA-----------GGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 160 ~L~VaD~~------~Gl~~v~~~gg~~~~l-~~~~-----------~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
.|.||+.. .|..|+|.++.+.... .+.. +.........|+++.+|.|+|.-
T Consensus 112 tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~ 180 (305)
T PF07433_consen 112 TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAM 180 (305)
T ss_pred EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEE
Confidence 88888643 2444444443331111 1111 11233467889999999999974
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=2.3 Score=40.32 Aligned_cols=117 Identities=17% Similarity=0.224 Sum_probs=62.5
Q ss_pred eEEEcCCCCEE-EEEcCCC--eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 84 SLEFDGLGRGP-YTGLADG--RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 84 ~ia~D~~G~~~-yt~~~~G--~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
+++|.++|+.+ |+...+| +|+.++.++.....+ . ...+.-....+.++ |+
T Consensus 244 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l------------------------t--~~~~~~~~~~wSpD-G~ 296 (427)
T PRK02889 244 APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRL------------------------T--QSSGIDTEPFFSPD-GR 296 (427)
T ss_pred ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEEC------------------------C--CCCCCCcCeEEcCC-CC
Confidence 57888888655 4555554 377777654421110 0 00111234568885 75
Q ss_pred -EEE-EeCC--CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEEE
Q 039124 161 -LYI-ADAY--YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLLR 235 (259)
Q Consensus 161 -L~V-aD~~--~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~r 235 (259)
|++ +|.. ..|+.++.+++..+.+.. .+. .....++++||+ |+++.... ..-+|+.
T Consensus 297 ~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~--~g~---~~~~~~~SpDG~~Ia~~s~~~---------------g~~~I~v 356 (427)
T PRK02889 297 SIYFTSDRGGAPQIYRMPASGGAAQRVTF--TGS---YNTSPRISPDGKLLAYISRVG---------------GAFKLYV 356 (427)
T ss_pred EEEEEecCCCCcEEEEEECCCCceEEEec--CCC---CcCceEECCCCCEEEEEEccC---------------CcEEEEE
Confidence 433 3322 238889988776665542 221 223568899997 55554321 0124666
Q ss_pred EeCCCCcEEEec
Q 039124 236 YDPPTKSNSYCV 247 (259)
Q Consensus 236 ydp~tg~~~vl~ 247 (259)
+|..+++.+.+.
T Consensus 357 ~d~~~g~~~~lt 368 (427)
T PRK02889 357 QDLATGQVTALT 368 (427)
T ss_pred EECCCCCeEEcc
Confidence 666666655554
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=4.4 Score=38.66 Aligned_cols=123 Identities=11% Similarity=0.069 Sum_probs=69.7
Q ss_pred eEEEcCCCC-EEEEEcCC--CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC-
Q 039124 84 SLEFDGLGR-GPYTGLAD--GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG- 159 (259)
Q Consensus 84 ~ia~D~~G~-~~yt~~~~--G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G- 159 (259)
...|.++|+ ++|+...+ ..|+.++.++...+.+ .. ..... ....|.++ |
T Consensus 237 ~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~L-----------T~------------~~~~d---~~p~~SPD-G~ 289 (419)
T PRK04043 237 VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQI-----------TN------------YPGID---VNGNFVED-DK 289 (419)
T ss_pred eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEc-----------cc------------CCCcc---CccEECCC-CC
Confidence 367888886 44555433 5688888765533221 10 00011 12357885 5
Q ss_pred cEEEEeCCC---ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEEE
Q 039124 160 DLYIADAYY---GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLLR 235 (259)
Q Consensus 160 ~L~VaD~~~---Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~r 235 (259)
.|++..... .|++++.++|+.+.+... |. .| ..++|||+ |.|+-..... + . .....+|+.
T Consensus 290 ~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~----~~-~~~SPDG~~Ia~~~~~~~~---~-----~-~~~~~~I~v 353 (419)
T PRK04043 290 RIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK----NN-SSVSTYKNYIVYSSRETNN---E-----F-GKNTFNLYL 353 (419)
T ss_pred EEEEEECCCCCceEEEEECCCCCeEeCccC--CC----cC-ceECCCCCEEEEEEcCCCc---c-----c-CCCCcEEEE
Confidence 465543222 499999999987666532 32 12 38899998 5555432210 0 0 012357899
Q ss_pred EeCCCCcEEEecCC
Q 039124 236 YDPPTKSNSYCVRW 249 (259)
Q Consensus 236 ydp~tg~~~vl~~~ 249 (259)
+|.++++.+.|-++
T Consensus 354 ~d~~~g~~~~LT~~ 367 (419)
T PRK04043 354 ISTNSDYIRRLTAN 367 (419)
T ss_pred EECCCCCeEECCCC
Confidence 99888888777543
|
|
| >COG3211 PhoX Predicted phosphatase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.4 Score=47.11 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=49.5
Q ss_pred CcCCCcceEEEeCCCCcEEEEeCC-----------------CceEEEECCCC-------eEEEeeecCCC----------
Q 039124 144 KWCGRPLGLRFNKDTGDLYIADAY-----------------YGLLVVGSKGG-------LATPLATQAGG---------- 189 (259)
Q Consensus 144 ~~~grPlGl~~d~~~G~L~VaD~~-----------------~Gl~~v~~~gg-------~~~~l~~~~~g---------- 189 (259)
....||-++++.+.+|++|++... .+|+++-+.++ ..+.++..-+.
T Consensus 414 T~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~ 493 (616)
T COG3211 414 TPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASAN 493 (616)
T ss_pred ccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccC
Confidence 456799999999988899997532 24899987765 34444322111
Q ss_pred ---CCccccccEEEcCCCcEEE-ecCCC
Q 039124 190 ---KPILFANDLDVHKNGSIFF-TDTSK 213 (259)
Q Consensus 190 ---~pl~~~Ndl~vd~dG~Iyf-TDss~ 213 (259)
.-|..|++|++|+.|++|+ ||.+.
T Consensus 494 ~~~~~f~~PDnl~fD~~GrLWi~TDg~~ 521 (616)
T COG3211 494 INANWFNSPDNLAFDPWGRLWIQTDGSG 521 (616)
T ss_pred cccccccCCCceEECCCCCEEEEecCCC
Confidence 1256699999999999997 66654
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=94.19 E-value=1.2 Score=43.91 Aligned_cols=123 Identities=13% Similarity=0.120 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCC-CcceEEEeCCCCcEEEEeCCCc
Q 039124 91 GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCG-RPLGLRFNKDTGDLYIADAYYG 169 (259)
Q Consensus 91 G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g-rPlGl~~d~~~G~L~VaD~~~G 169 (259)
++.+|+...+|.|+.++...+. ..+...... +. .......|. -..|+++.. +.+|+++....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk-~lW~~~~~~--------~~------~~~~~~~~~~~~rg~av~~--~~v~v~t~dg~ 131 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGK-ELWKYDPKL--------PD------DVIPVMCCDVVNRGVALYD--GKVFFGTLDAR 131 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCc-eeeEecCCC--------Cc------ccccccccccccccceEEC--CEEEEEcCCCE
Confidence 4458888888999999987552 222211000 00 000000111 113566663 78999888778
Q ss_pred eEEEECCCCeEEEeeecCCCCC--ccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEE
Q 039124 170 LLVVGSKGGLATPLATQAGGKP--ILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNS 244 (259)
Q Consensus 170 l~~v~~~gg~~~~l~~~~~g~p--l~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~ 244 (259)
|+.+|.++|+. ..-....+.. ......-.+. +|.||+..++..+ ...|.|+.||..||+..
T Consensus 132 l~ALDa~TGk~-~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~------------~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 132 LVALDAKTGKV-VWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEF------------GVRGYVTAYDAKTGKLV 194 (527)
T ss_pred EEEEECCCCCE-EeecccccccccccccCCcEEE-CCEEEEeeccccc------------CCCcEEEEEECCCCcee
Confidence 99999998863 3322221111 1111222222 6788888665432 24678888888888654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.00 E-value=1.4 Score=44.75 Aligned_cols=107 Identities=18% Similarity=0.284 Sum_probs=74.7
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc-cEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENV-GWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~-~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
...=.++++.++|.++.|+..||+|..|+...+ -+.+| .||+.+ -.|+.|..
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF-------------------------teHts~-Vt~v~f~~- 402 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF-------------------------TEHTSG-VTAVQFTA- 402 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe-------------------------ccCCCc-eEEEEEEe-
Confidence 556668999999999999999999999987654 12222 234443 36899998
Q ss_pred CCcEEEEeCCCc-eEEEECCCCe-EEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCC
Q 039124 158 TGDLYIADAYYG-LLVVGSKGGL-ATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYN 216 (259)
Q Consensus 158 ~G~L~VaD~~~G-l~~v~~~gg~-~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~ 216 (259)
.|+.+++-+-.| +...|..... .+++... .| ...+-+++|+.|.|.+.-+-..|.
T Consensus 403 ~g~~llssSLDGtVRAwDlkRYrNfRTft~P---~p-~QfscvavD~sGelV~AG~~d~F~ 459 (893)
T KOG0291|consen 403 RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP---EP-IQFSCVAVDPSGELVCAGAQDSFE 459 (893)
T ss_pred cCCEEEEeecCCeEEeeeecccceeeeecCC---Cc-eeeeEEEEcCCCCEEEeeccceEE
Confidence 599988877667 5555765432 3444432 23 356899999999998876655443
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=93.74 E-value=2.6 Score=38.40 Aligned_cols=131 Identities=14% Similarity=0.102 Sum_probs=75.5
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCcccccccccc-ccCcCCCcceEEEe--
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWK-HEKWCGRPLGLRFN-- 155 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~grPlGl~~d-- 155 (259)
...-.+|..+.+|+++.+.-....|++|++..+. ..+....+..+. .. .......-+..++.
T Consensus 143 ~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~-I~W~lgG~~~~d--------------f~~~~~~f~~QHdar~~~~ 207 (299)
T PF14269_consen 143 YFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGK-IIWRLGGKRNSD--------------FTLPATNFSWQHDARFLNE 207 (299)
T ss_pred ccEeeeeeecCCccEEEEecccCEEEEEECCCCc-EEEEeCCCCCCc--------------ccccCCcEeeccCCEEecc
Confidence 3445577888899977777778889999976652 233332210000 00 01112334555555
Q ss_pred --CCCCcEEEEeCC----------Cc-eEEEECCCCeEEEeeecC-CCCC--ccccccEEEcCCCcEEEecCCCCCCccc
Q 039124 156 --KDTGDLYIADAY----------YG-LLVVGSKGGLATPLATQA-GGKP--ILFANDLDVHKNGSIFFTDTSKRYNRVD 219 (259)
Q Consensus 156 --~~~G~L~VaD~~----------~G-l~~v~~~gg~~~~l~~~~-~g~p--l~~~Ndl~vd~dG~IyfTDss~~~~~~~ 219 (259)
. ++.|.+-|-. .+ ++.+|+++..++.+-.-. ...+ -...-.+-.-++|++.++...
T Consensus 208 ~~~-~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~------- 279 (299)
T PF14269_consen 208 SND-DGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGN------- 279 (299)
T ss_pred CCC-CCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCC-------
Confidence 4 4677776652 23 789999987665443322 1111 223335555677998888765
Q ss_pred ceeeeeccCCCceEEEEeCCCCcE
Q 039124 220 HFFILLEGESTGRLLRYDPPTKSN 243 (259)
Q Consensus 220 ~~~~~~e~~~~GrL~rydp~tg~~ 243 (259)
.||+..|+++ |++
T Consensus 280 ----------~g~~~E~~~~-G~v 292 (299)
T PF14269_consen 280 ----------NGRISEFTPD-GEV 292 (299)
T ss_pred ----------CceEEEECCC-CCE
Confidence 3678888876 544
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=93.64 E-value=1.1 Score=41.44 Aligned_cols=111 Identities=19% Similarity=0.242 Sum_probs=65.4
Q ss_pred EcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEEeC
Q 039124 87 FDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADA 166 (259)
Q Consensus 87 ~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~VaD~ 166 (259)
.+.+|. +|+...+|+|+.+++++.. ..+ +. .+.+ ....+..|... . +|++|+.+.
T Consensus 65 ~~~dg~-v~~~~~~G~i~A~d~~~g~-~~W-------~~-~~~~-----------~~~~~~~~~~~---~-~G~i~~g~~ 119 (370)
T COG1520 65 ADGDGT-VYVGTRDGNIFALNPDTGL-VKW-------SY-PLLG-----------AVAQLSGPILG---S-DGKIYVGSW 119 (370)
T ss_pred EeeCCe-EEEecCCCcEEEEeCCCCc-EEe-------cc-cCcC-----------cceeccCceEE---e-CCeEEEecc
Confidence 445676 8898999999999998763 111 11 1110 01223334433 2 489999877
Q ss_pred CCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcE
Q 039124 167 YYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSN 243 (259)
Q Consensus 167 ~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~ 243 (259)
...++.+|.++|+ ..+..+..+. ... -+-.+-.+|.+|+... .|.++.+|++||+.
T Consensus 120 ~g~~y~ld~~~G~-~~W~~~~~~~-~~~-~~~~v~~~~~v~~~s~------------------~g~~~al~~~tG~~ 175 (370)
T COG1520 120 DGKLYALDASTGT-LVWSRNVGGS-PYY-ASPPVVGDGTVYVGTD------------------DGHLYALNADTGTL 175 (370)
T ss_pred cceEEEEECCCCc-EEEEEecCCC-eEE-ecCcEEcCcEEEEecC------------------CCeEEEEEccCCcE
Confidence 6559999997675 3344344441 222 2335556788888731 24677777776655
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=93.63 E-value=5.1 Score=37.89 Aligned_cols=68 Identities=21% Similarity=0.423 Sum_probs=42.7
Q ss_pred CCCcceEEEeCCCCcEEEEeCCCceEEEECC--CCeEEEeeecCCCCCcc-ccccEEE--cCCC--cEEEecCCC
Q 039124 146 CGRPLGLRFNKDTGDLYIADAYYGLLVVGSK--GGLATPLATQAGGKPIL-FANDLDV--HKNG--SIFFTDTSK 213 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~~~Gl~~v~~~--gg~~~~l~~~~~g~pl~-~~Ndl~v--d~dG--~IyfTDss~ 213 (259)
.+.|-|+++|...|.|||++-..||++++.+ ++....++....|..+. =.-+|++ ..+| -|.+|+-..
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~ 281 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGD 281 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGG
T ss_pred CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCC
Confidence 4467899999888999999999999999754 54444555445554332 3456776 3344 466666543
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.83 Score=41.84 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=50.0
Q ss_pred CCCcceEEEeCCCCcEEEEeCC-Cc--eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccce
Q 039124 146 CGRPLGLRFNKDTGDLYIADAY-YG--LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHF 221 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~~-~G--l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~ 221 (259)
..|.+|++.++. ....|+=+. -| ++.+|..+|+........+|. .|---.++++||+ +|.|+.-.
T Consensus 4 P~RgH~~a~~p~-~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEnd~-------- 72 (305)
T PF07433_consen 4 PARGHGVAAHPT-RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTENDY-------- 72 (305)
T ss_pred CccccceeeCCC-CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEecccc--------
Confidence 467788988884 444444333 35 778899998765555444443 3445678899998 77776532
Q ss_pred eeeeccCCCceEEEEeCC
Q 039124 222 FILLEGESTGRLLRYDPP 239 (259)
Q Consensus 222 ~~~~e~~~~GrL~rydp~ 239 (259)
....|+|-.||..
T Consensus 73 -----~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 73 -----ETGRGVIGVYDAA 85 (305)
T ss_pred -----CCCcEEEEEEECc
Confidence 2455667777765
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=93.53 E-value=1.7 Score=42.14 Aligned_cols=125 Identities=9% Similarity=0.044 Sum_probs=66.7
Q ss_pred CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEEeCCCce
Q 039124 91 GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGL 170 (259)
Q Consensus 91 G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~VaD~~~Gl 170 (259)
++.+|+...+|+|+.++...+. ..+... ... +.. ........+ |+.+.. .+.+|+.+....|
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~-~~W~~~-------~~~-~~~------~~~~~~~~~--g~~~~~-~~~V~v~~~~g~v 122 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGK-VLWRYD-------PKL-PAD------RGCCDVVNR--GVAYWD-PRKVFFGTFDGRL 122 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCCh-hhceeC-------CCC-Ccc------ccccccccC--CcEEcc-CCeEEEecCCCeE
Confidence 3448888889999999986542 111111 110 000 000011222 344443 2789998876679
Q ss_pred EEEECCCCeEEEeeecCCCC---CccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEE
Q 039124 171 LVVGSKGGLATPLATQAGGK---PILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNS 244 (259)
Q Consensus 171 ~~v~~~gg~~~~l~~~~~g~---pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~ 244 (259)
+.+|.++|+. .+-....+. ....-....++ +|.+|+..+...+- .....|.|+.+|.+||+..
T Consensus 123 ~AlD~~TG~~-~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~---------~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 123 VALDAETGKQ-VWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFF---------ACGVRGALRAYDVETGKLL 188 (488)
T ss_pred EEEECCCCCE-eeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccc---------cCCCCcEEEEEECCCCcee
Confidence 9999998863 333332221 01112333444 37788875543211 1234578899998888754
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=3.6 Score=39.01 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=33.8
Q ss_pred eEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEec
Q 039124 151 GLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTD 210 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTD 210 (259)
..++.++ |+.+++-...+++++|..++..+.+..... ...+.++|||+ |+++.
T Consensus 337 ~~~~SpD-G~~ia~~~~~~i~~~Dl~~g~~~~lt~~~~------~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 337 SAQISAD-GKTLVMINGDNVVKQDLTSGSTEVLSSTFL------DESPSISPNGIMIIYSS 390 (429)
T ss_pred CccCCCC-CCEEEEEcCCCEEEEECCCCCeEEecCCCC------CCCceECCCCCEEEEEE
Confidence 3567774 665544444679999998887665543221 24577899997 55554
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=93.41 E-value=1.9 Score=41.75 Aligned_cols=76 Identities=13% Similarity=0.024 Sum_probs=38.3
Q ss_pred EEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCC
Q 039124 161 LYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPT 240 (259)
Q Consensus 161 L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~t 240 (259)
+|+......++.+|.++|+ ..+..+.. -.+++.++ +.+|+.-........+--....-....|+|+.+|..|
T Consensus 304 V~~g~~~G~l~ald~~tG~-~~W~~~~~------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t 375 (488)
T cd00216 304 IVHAPKNGFFYVLDRTTGK-LISARPEV------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT 375 (488)
T ss_pred EEEECCCceEEEEECCCCc-EeeEeEee------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence 4555433348899999886 33332221 12344444 7788854321111000000011134578999999888
Q ss_pred CcEE
Q 039124 241 KSNS 244 (259)
Q Consensus 241 g~~~ 244 (259)
|++.
T Consensus 376 G~~~ 379 (488)
T cd00216 376 GKVV 379 (488)
T ss_pred CcEe
Confidence 8653
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.19 E-value=2 Score=40.96 Aligned_cols=130 Identities=18% Similarity=0.102 Sum_probs=78.1
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcE
Q 039124 82 PESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDL 161 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L 161 (259)
=.+.+|.+||.++-++..||.|..|+..... .. + .+...-|--..|.|.. ||-.
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-~~-a-----------------------~Fpght~~vk~i~FsE-NGY~ 403 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-NV-A-----------------------KFPGHTGPVKAISFSE-NGYW 403 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCcc-cc-c-----------------------cCCCCCCceeEEEecc-CceE
Confidence 3477888999988889999988888876541 00 0 0111122235889987 6877
Q ss_pred EEEeCCCc-eEEEECCCCe-EEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCC
Q 039124 162 YIADAYYG-LLVVGSKGGL-ATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPP 239 (259)
Q Consensus 162 ~VaD~~~G-l~~v~~~gg~-~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~ 239 (259)
++..+..+ +.-.|...-+ ...+. .+ ..+-.|.+.+|..|.....-.+. =++|.++.+
T Consensus 404 Lat~add~~V~lwDLRKl~n~kt~~--l~--~~~~v~s~~fD~SGt~L~~~g~~-----------------l~Vy~~~k~ 462 (506)
T KOG0289|consen 404 LATAADDGSVKLWDLRKLKNFKTIQ--LD--EKKEVNSLSFDQSGTYLGIAGSD-----------------LQVYICKKK 462 (506)
T ss_pred EEEEecCCeEEEEEehhhcccceee--cc--ccccceeEEEcCCCCeEEeecce-----------------eEEEEEecc
Confidence 77666666 7667764211 22222 11 12358999999999744332221 168888877
Q ss_pred CCcEEEe---cCCCCCcceeEE
Q 039124 240 TKSNSYC---VRWLGFSKWSTI 258 (259)
Q Consensus 240 tg~~~vl---~~~L~~pNGval 258 (259)
|++.+.+ .+-...++|+.|
T Consensus 463 ~k~W~~~~~~~~~sg~st~v~F 484 (506)
T KOG0289|consen 463 TKSWTEIKELADHSGLSTGVRF 484 (506)
T ss_pred cccceeeehhhhcccccceeee
Confidence 7665443 344446666654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.92 Score=44.11 Aligned_cols=128 Identities=19% Similarity=0.207 Sum_probs=77.5
Q ss_pred CCCcccCCCeEEcc---C-CCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccc
Q 039124 63 DNLSRLVTGKLEFV---D-EVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAK 138 (259)
Q Consensus 63 ~~n~~L~~~e~l~~---~-~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~ 138 (259)
+.|+...+-+++-. + .=.-|-+.+|+++|.++-+++.||.|.-|+..+. .. + ...|
T Consensus 297 dv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~--~v------~--p~~~---------- 356 (641)
T KOG0772|consen 297 DVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSR--TV------R--PVMK---------- 356 (641)
T ss_pred ecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCc--cc------c--cceE----------
Confidence 56776666554432 2 2245678899999998889999999999986432 11 0 0012
Q ss_pred cccccCcCCC-cceEEEeCCCCcEEEEeCCCceEEE-ECCCCeEEEeeecCCCCCcccc-ccEEEcCCCcEEEecCCCC
Q 039124 139 QWKHEKWCGR-PLGLRFNKDTGDLYIADAYYGLLVV-GSKGGLATPLATQAGGKPILFA-NDLDVHKNGSIFFTDTSKR 214 (259)
Q Consensus 139 ~~~~~~~~gr-PlGl~~d~~~G~L~VaD~~~Gl~~v-~~~gg~~~~l~~~~~g~pl~~~-Ndl~vd~dG~IyfTDss~~ 214 (259)
+..+|..|. -..|.|..+ |+.+.+=...+-++| |...- .+.|.. ..|.+-.|+ -|.++.|+..|.+|-+|..
T Consensus 357 -vk~AH~~g~~Itsi~FS~d-g~~LlSRg~D~tLKvWDLrq~-kkpL~~-~tgL~t~~~~tdc~FSPd~kli~TGtS~~ 431 (641)
T KOG0772|consen 357 -VKDAHLPGQDITSISFSYD-GNYLLSRGFDDTLKVWDLRQF-KKPLNV-RTGLPTPFPGTDCCFSPDDKLILTGTSAP 431 (641)
T ss_pred -eeeccCCCCceeEEEeccc-cchhhhccCCCceeeeecccc-ccchhh-hcCCCccCCCCccccCCCceEEEeccccc
Confidence 223444443 357899995 887766444443333 55432 233321 233333333 4889999999999988754
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.97 E-value=4.2 Score=36.79 Aligned_cols=112 Identities=21% Similarity=0.159 Sum_probs=73.8
Q ss_pred CCeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 70 TGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 70 ~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
+..+.|.|.-..=-+++++++.+.+.++..|..|.-|+--+...-+ ... .+ .-+--
T Consensus 96 ~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t--~~~------~~----------------~~~WV 151 (315)
T KOG0279|consen 96 ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYT--IHE------DS----------------HREWV 151 (315)
T ss_pred cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEE--Eec------CC----------------CcCcE
Confidence 3456778877777899999999999999999999999876652111 110 00 01223
Q ss_pred ceEEEeCCCCcEEEEeCC-CceEEE-ECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 150 LGLRFNKDTGDLYIADAY-YGLLVV-GSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~-~Gl~~v-~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
..++|.|...+.||+.+. .+.+|| |.++-+ +....-|. -...|-+++.|||.+-.+
T Consensus 152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~---l~~~~~gh-~~~v~t~~vSpDGslcas 209 (315)
T KOG0279|consen 152 SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ---LRTTFIGH-SGYVNTVTVSPDGSLCAS 209 (315)
T ss_pred EEEEEcCCCCCcEEEEccCCceEEEEccCCcc---hhhccccc-cccEEEEEECCCCCEEec
Confidence 578999854466665443 355555 777643 22333332 357999999999998776
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=92.96 E-value=2.6 Score=37.82 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=58.1
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCccEE-EEEEeecCccccccccCccccccccccccCcCCCc----ceEEEeCCC
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENVGWE-TFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP----LGLRFNKDT 158 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~-~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP----lGl~~d~~~ 158 (259)
+++. +|..+|.+..+.+|+.++|+.-... .+. ++ ..|+| +=|.+- +
T Consensus 134 GLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~---------V~----------------~~g~pv~~LNELE~i--~ 184 (264)
T PF05096_consen 134 GLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQ---------VT----------------DNGRPVSNLNELEYI--N 184 (264)
T ss_dssp EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE----------E----------------ETTEE---EEEEEEE--T
T ss_pred EEEc--CCCEEEEECCccceEEECCcccceEEEEE---------EE----------------ECCEECCCcEeEEEE--c
Confidence 4554 4556888888889999998753211 111 11 12333 346665 4
Q ss_pred CcEEEEeCCC--ceEEEECCCCeEEEeeec------C--CCC---CccccccEEEcCCC-cEEEecC
Q 039124 159 GDLYIADAYY--GLLVVGSKGGLATPLATQ------A--GGK---PILFANDLDVHKNG-SIFFTDT 211 (259)
Q Consensus 159 G~L~VaD~~~--Gl~~v~~~gg~~~~l~~~------~--~g~---pl~~~Ndl~vd~dG-~IyfTDs 211 (259)
|.+| |+-.. .|++|||++|++.-+.+- . ... .....||||-|+++ ++|+|--
T Consensus 185 G~Iy-ANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 185 GKIY-ANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TEEE-EEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CEEE-EEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 8888 55443 599999999987766541 1 111 14579999999865 5999864
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.70 E-value=2.2 Score=38.42 Aligned_cols=121 Identities=15% Similarity=0.144 Sum_probs=63.6
Q ss_pred eEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc--EEEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 72 KLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVG--WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~--~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
|.+..+++++--.++ |+.+..++.+|.++.+....+. |. |. .|+. .....+
T Consensus 48 e~ilg~RiE~sa~vv----gdfVV~GCy~g~lYfl~~~tGs~~w~-f~---------~~~~---------vk~~a~---- 100 (354)
T KOG4649|consen 48 EAILGVRIECSAIVV----GDFVVLGCYSGGLYFLCVKTGSQIWN-FV---------ILET---------VKVRAQ---- 100 (354)
T ss_pred ehhhCceeeeeeEEE----CCEEEEEEccCcEEEEEecchhheee-ee---------ehhh---------hccceE----
Confidence 444555555444442 5667778888888877655431 21 11 1210 111111
Q ss_pred ceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcC-CCcEEEecCCCCCCcccceeeeeccC
Q 039124 150 LGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHK-NGSIFFTDTSKRYNRVDHFFILLEGE 228 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTDss~~~~~~~~~~~~~e~~ 228 (259)
.|.++|-+|+......++.+|+.+. .-++-....|.-+ -.-++++ +|.+|++-.+
T Consensus 101 ----~d~~~glIycgshd~~~yalD~~~~-~cVykskcgG~~f---~sP~i~~g~~sly~a~t~---------------- 156 (354)
T KOG4649|consen 101 ----CDFDGGLIYCGSHDGNFYALDPKTY-GCVYKSKCGGGTF---VSPVIAPGDGSLYAAITA---------------- 156 (354)
T ss_pred ----EcCCCceEEEecCCCcEEEeccccc-ceEEecccCCcee---ccceecCCCceEEEEecc----------------
Confidence 2333344444333334666666653 2334344444332 2335677 8899998654
Q ss_pred CCceEEEEeCCCCcEEE
Q 039124 229 STGRLLRYDPPTKSNSY 245 (259)
Q Consensus 229 ~~GrL~rydp~tg~~~v 245 (259)
|+|++.++++...++
T Consensus 157 --G~vlavt~~~~~~~~ 171 (354)
T KOG4649|consen 157 --GAVLAVTKNPYSSTE 171 (354)
T ss_pred --ceEEEEccCCCCcce
Confidence 688888887765443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.48 E-value=4.6 Score=36.86 Aligned_cols=157 Identities=17% Similarity=0.178 Sum_probs=83.1
Q ss_pred eEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc-cEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 72 KLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENV-GWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~-~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
.++-+..+.-||+|++-..|....++-.+.+++.+.-+.. ....+..... ++.. . ...-||. -
T Consensus 121 rtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i----~L~~----------~-~k~N~Gf-E 184 (316)
T COG3204 121 RTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKI----PLGT----------T-NKKNKGF-E 184 (316)
T ss_pred EEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEE----eccc----------c-CCCCcCc-e
Confidence 3444556889999999777776667777888887654433 1222111000 0100 0 0012332 4
Q ss_pred eEEEeCCCCcEEEEeCCC--ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCC-CCcccceeeeecc
Q 039124 151 GLRFNKDTGDLYIADAYY--GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKR-YNRVDHFFILLEG 227 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~--Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~-~~~~~~~~~~~e~ 227 (259)
|++.|++++.||||=-.+ +|++++..- ..+.. .-..+...+-.+|+.|-|+- |+...--+.+++
T Consensus 185 GlA~d~~~~~l~~aKEr~P~~I~~~~~~~---~~l~~---------~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS- 251 (316)
T COG3204 185 GLAWDPVDHRLFVAKERNPIGIFEVTQSP---SSLSV---------HASLDPTADRDLFVLDVSGLEFNAITNSLLVLS- 251 (316)
T ss_pred eeecCCCCceEEEEEccCCcEEEEEecCC---ccccc---------ccccCcccccceEeeccccceecCCCCcEEEEe-
Confidence 999999888999985543 688886221 11111 11111123334666666653 333222233443
Q ss_pred CCCceEEEEeCCCCcEEEec----------CCCCCcceeEE
Q 039124 228 ESTGRLLRYDPPTKSNSYCV----------RWLGFSKWSTI 258 (259)
Q Consensus 228 ~~~GrL~rydp~tg~~~vl~----------~~L~~pNGval 258 (259)
.-+++|+.+|.+ |++.-++ +++..|-||++
T Consensus 252 ~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiam 291 (316)
T COG3204 252 DESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAM 291 (316)
T ss_pred cCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEE
Confidence 345688888876 5543222 34556667664
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.33 E-value=3 Score=43.09 Aligned_cols=115 Identities=17% Similarity=0.107 Sum_probs=68.9
Q ss_pred eEEccCCCCCce-eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 72 KLEFVDEVFGPE-SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 72 e~l~~~~l~gPE-~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
++.+.+ ..+|- ++.+|++|+++-+...||.|..|+.+..... +..+... .| ++....|+.
T Consensus 131 ~~~lrg-h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~-~tl~~v~----k~-------------n~~~~s~i~ 191 (933)
T KOG1274|consen 131 EKVLRG-HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS-KTLTGVD----KD-------------NEFILSRIC 191 (933)
T ss_pred heeecc-cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhh-hhcccCC----cc-------------cccccccee
Confidence 444444 44553 6789999999999999999999998765211 1111110 11 111223333
Q ss_pred -eEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEE
Q 039124 151 -GLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIF 207 (259)
Q Consensus 151 -Gl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~Iy 207 (259)
=+++.+++|.|.+.-....+..++.++.+.. ..-..+...- -.+++..+|+|.-.
T Consensus 192 ~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~-f~Lr~~~~ss-~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 192 TRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ-FKLRDKLSSS-KFSDLQWSPNGKYI 247 (933)
T ss_pred eeeeecCCCCeEEeeccCCeEEEEccCCceeh-eeeccccccc-ceEEEEEcCCCcEE
Confidence 2589998788888766666888888876422 1111111111 27899999998633
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=92.18 E-value=2 Score=41.77 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=43.9
Q ss_pred cCcCCCcc-eEEEeCCCCcEEEEeCCCc---eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCC
Q 039124 143 EKWCGRPL-GLRFNKDTGDLYIADAYYG---LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSK 213 (259)
Q Consensus 143 ~~~~grPl-Gl~~d~~~G~L~VaD~~~G---l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~ 213 (259)
+++++.|+ -++|.++ |..+..-+..+ |++|+.++.... .+....| .+.-.|+.++|++...|.|..
T Consensus 443 ~~~d~~~ls~v~ysp~-G~~lAvgs~d~~iyiy~Vs~~g~~y~-r~~k~~g---s~ithLDwS~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 443 IHTDNEQLSVVRYSPD-GAFLAVGSHDNHIYIYRVSANGRKYS-RVGKCSG---SPITHLDWSSDSQFLVSNSGD 512 (626)
T ss_pred EEecCCceEEEEEcCC-CCEEEEecCCCeEEEEEECCCCcEEE-EeeeecC---ceeEEeeecCCCceEEeccCc
Confidence 46677787 5688884 77765444433 788887765443 3344555 356778888998888887753
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=91.15 E-value=16 Score=36.42 Aligned_cols=114 Identities=9% Similarity=0.015 Sum_probs=65.4
Q ss_pred ccCCCCCceeEEEcCC-CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEE
Q 039124 75 FVDEVFGPESLEFDGL-GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLR 153 (259)
Q Consensus 75 ~~~~l~gPE~ia~D~~-G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~ 153 (259)
+.+.-..-.+++|.+. ++++.++..||.|..|+........ . ...+++| ......+.-..++
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~-~----~i~~p~~------------~L~gH~~~V~sVa 132 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV-K----EIKDPQC------------ILKGHKKKISIID 132 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc-c----ccccceE------------EeecCCCcEEEEE
Confidence 3444456678999985 7889999999999999865321000 0 0000011 0111123446889
Q ss_pred EeCCCCc-EEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 154 FNKDTGD-LYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 154 ~d~~~G~-L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
|+++ +. ++++-+..| |...|..+++...-.. .. .....++++++|.+.++-+
T Consensus 133 f~P~-g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~----~~V~SlswspdG~lLat~s 186 (568)
T PTZ00420 133 WNPM-NYYIMCSSGFDSFVNIWDIENEKRAFQIN-MP----KKLSSLKWNIKGNLLSGTC 186 (568)
T ss_pred ECCC-CCeEEEEEeCCCeEEEEECCCCcEEEEEe-cC----CcEEEEEECCCCCEEEEEe
Confidence 9985 65 444433444 5566887765321111 11 2367899999999877644
|
|
| >PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.17 Score=31.61 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=17.4
Q ss_pred cccccEEEcCCCcEEEecCC
Q 039124 193 LFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 193 ~~~Ndl~vd~dG~IyfTDss 212 (259)
..+++|++|++|+||++=.+
T Consensus 13 ~~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eeEEEEEECCCCCEEEEEee
Confidence 47999999999999998654
|
SBBP stands for Seven Bladed Beta Propeller. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.87 E-value=3.9 Score=36.95 Aligned_cols=70 Identities=21% Similarity=0.202 Sum_probs=46.6
Q ss_pred EEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEE
Q 039124 85 LEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIA 164 (259)
Q Consensus 85 ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~Va 164 (259)
...|.++.++|++.+||..+.+|+.... ..+. ..|.|+ --.+-++++.++.||+|
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~-cVyk--------skcgG~----------------~f~sP~i~~g~~sly~a 153 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYG-CVYK--------SKCGGG----------------TFVSPVIAPGDGSLYAA 153 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccc-eEEe--------cccCCc----------------eeccceecCCCceEEEE
Confidence 3567889999999999999999987552 1110 013321 11234556645899998
Q ss_pred eCCCceEEEECCCCe
Q 039124 165 DAYYGLLVVGSKGGL 179 (259)
Q Consensus 165 D~~~Gl~~v~~~gg~ 179 (259)
-....+++++++.+.
T Consensus 154 ~t~G~vlavt~~~~~ 168 (354)
T KOG4649|consen 154 ITAGAVLAVTKNPYS 168 (354)
T ss_pred eccceEEEEccCCCC
Confidence 766668999887663
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.75 E-value=4.6 Score=38.47 Aligned_cols=141 Identities=11% Similarity=0.161 Sum_probs=88.0
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
-..+-|.+|-++|..+.||..|+.|..|+.+|.... .|+.... .+-..+++..|+
T Consensus 312 ~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~------------------------~W~gvr~-~~v~dlait~Dg 366 (519)
T KOG0293|consen 312 GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG------------------------NWEGVRD-PKVHDLAITYDG 366 (519)
T ss_pred CCCcceeEEccCCceeEecCCCCcEEEecCCcchhh------------------------ccccccc-ceeEEEEEcCCC
Confidence 367889999999999999999999999999886210 1322211 223577777753
Q ss_pred CcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCC----CCccc--------------c
Q 039124 159 GDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKR----YNRVD--------------H 220 (259)
Q Consensus 159 G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~----~~~~~--------------~ 220 (259)
..++..+....+..++.++..-+-+.++.. | ...+.+..||.+..++-... |+..+ |
T Consensus 367 k~vl~v~~d~~i~l~~~e~~~dr~lise~~--~---its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~f 441 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREARVDRGLISEEQ--P---ITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHF 441 (519)
T ss_pred cEEEEEecccceeeechhhhhhhccccccC--c---eeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccce
Confidence 356666666667777665542222443322 2 45677778887666554431 22111 1
Q ss_pred e----------eeeeccCCCceEEEEeCCCCcEEEecCC
Q 039124 221 F----------FILLEGESTGRLLRYDPPTKSNSYCVRW 249 (259)
Q Consensus 221 ~----------~~~~e~~~~GrL~rydp~tg~~~vl~~~ 249 (259)
+ --++++.-.+.+|-.+..+|+.-.++.|
T Consensus 442 iIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 442 IIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred EEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence 0 1245667788999999888876666554
|
|
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=90.69 E-value=1.2 Score=28.19 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=31.5
Q ss_pred CcEEEEeCCCc--eEEEECCCCeEEEeeecCCCCCccccccEEEcC
Q 039124 159 GDLYIADAYYG--LLVVGSKGGLATPLATQAGGKPILFANDLDVHK 202 (259)
Q Consensus 159 G~L~VaD~~~G--l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~ 202 (259)
++||-+|.... |.+.+.+|...++++.+ .+..|++|+||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~----~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISD----DLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEES----STSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEEC----CCCCcCEEEECC
Confidence 47899998876 67778888877777754 377899999984
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=90.52 E-value=0.8 Score=34.06 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=19.8
Q ss_pred CccccccEEEcCCCc-EEEecCCC
Q 039124 191 PILFANDLDVHKNGS-IFFTDTSK 213 (259)
Q Consensus 191 pl~~~Ndl~vd~dG~-IyfTDss~ 213 (259)
.+.+||||+++++++ ||++++..
T Consensus 52 g~~~aNGI~~s~~~k~lyVa~~~~ 75 (86)
T PF01731_consen 52 GFSFANGIAISPDKKYLYVASSLA 75 (86)
T ss_pred cCCCCceEEEcCCCCEEEEEeccC
Confidence 367999999999987 99999864
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.97 Score=27.65 Aligned_cols=34 Identities=29% Similarity=0.326 Sum_probs=26.3
Q ss_pred cCCCcceEEEeCCCCcEEEEeCCCc-eEEEECCCC
Q 039124 145 WCGRPLGLRFNKDTGDLYIADAYYG-LLVVGSKGG 178 (259)
Q Consensus 145 ~~grPlGl~~d~~~G~L~VaD~~~G-l~~v~~~gg 178 (259)
....|.|+++|..++.||-+|...+ |.+.+.+|.
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 3456999999997788999999876 566666553
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=89.46 E-value=1.8 Score=42.61 Aligned_cols=67 Identities=18% Similarity=0.342 Sum_probs=40.9
Q ss_pred CCcEEEEeCCCceEEEECCCCeEEEeeecCCCC-Ccc-------ccccEEEcCCCcEEEecCCCCCCcccceeeeeccCC
Q 039124 158 TGDLYIADAYYGLLVVGSKGGLATPLATQAGGK-PIL-------FANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGES 229 (259)
Q Consensus 158 ~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~-pl~-------~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~ 229 (259)
+|.+|+++....|+.+|.++|+ ..+....... ... ...++++. +|+||+++.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk-~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~------------------ 128 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGK-ELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGTL------------------ 128 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCc-eeeEecCCCCcccccccccccccccceEE-CCEEEEEcC------------------
Confidence 4799999887779999999885 3333222110 000 11334444 467887653
Q ss_pred CceEEEEeCCCCcEE
Q 039124 230 TGRLLRYDPPTKSNS 244 (259)
Q Consensus 230 ~GrL~rydp~tg~~~ 244 (259)
.|+|+.+|.+||+..
T Consensus 129 dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 129 DARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEEECCCCCEE
Confidence 357888888877653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=89.30 E-value=1.6 Score=40.41 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=45.2
Q ss_pred EeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceE
Q 039124 154 FNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRL 233 (259)
Q Consensus 154 ~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL 233 (259)
.+. +|.+|+......|+.+|++++.+ .+.....+ .....+.-.+..+|+|||++.. |.+
T Consensus 65 ~~~-dg~v~~~~~~G~i~A~d~~~g~~-~W~~~~~~-~~~~~~~~~~~~~G~i~~g~~~------------------g~~ 123 (370)
T COG1520 65 ADG-DGTVYVGTRDGNIFALNPDTGLV-KWSYPLLG-AVAQLSGPILGSDGKIYVGSWD------------------GKL 123 (370)
T ss_pred Eee-CCeEEEecCCCcEEEEeCCCCcE-EecccCcC-cceeccCceEEeCCeEEEeccc------------------ceE
Confidence 455 58999884444599999999863 34332222 2345666677779999999864 257
Q ss_pred EEEeCCCCcE
Q 039124 234 LRYDPPTKSN 243 (259)
Q Consensus 234 ~rydp~tg~~ 243 (259)
|++|..+|+.
T Consensus 124 y~ld~~~G~~ 133 (370)
T COG1520 124 YALDASTGTL 133 (370)
T ss_pred EEEECCCCcE
Confidence 7777655543
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=89.29 E-value=2.9 Score=42.20 Aligned_cols=114 Identities=16% Similarity=0.182 Sum_probs=78.7
Q ss_pred CCCeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-EEEEEEeecCccccccccCccccccccccccCcCC
Q 039124 69 VTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVG-WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCG 147 (259)
Q Consensus 69 ~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~-~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g 147 (259)
.+.++++.|.+.-=.|+.|.|+.+.+.||..|..|..|+...+. .+.| .+ | -+
T Consensus 525 ~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF--~G-----------------------H-~~ 578 (707)
T KOG0263|consen 525 NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF--TG-----------------------H-KG 578 (707)
T ss_pred CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe--cC-----------------------C-CC
Confidence 45678899988888899999999988999999999888875542 2222 10 1 12
Q ss_pred CcceEEEeCCCCcEEEEeCCCceE-EEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCC
Q 039124 148 RPLGLRFNKDTGDLYIADAYYGLL-VVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSK 213 (259)
Q Consensus 148 rPlGl~~d~~~G~L~VaD~~~Gl~-~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~ 213 (259)
.-..|+|.+ .|.-++.-+..|++ ..|..+|. .+. ..-|. -...+.|.+..||+|.++++..
T Consensus 579 ~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~~--~v~-~l~~H-t~ti~SlsFS~dg~vLasgg~D 640 (707)
T KOG0263|consen 579 PVTALAFSP-CGRYLASGDEDGLIKIWDLANGS--LVK-QLKGH-TGTIYSLSFSRDGNVLASGGAD 640 (707)
T ss_pred ceEEEEEcC-CCceEeecccCCcEEEEEcCCCc--chh-hhhcc-cCceeEEEEecCCCEEEecCCC
Confidence 235789998 48776655555644 44877763 222 22222 3467889999999999998764
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=89.08 E-value=5.3 Score=36.39 Aligned_cols=90 Identities=16% Similarity=0.177 Sum_probs=58.1
Q ss_pred cceEEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecC-------CCCCccccccEEEc----CCCcEEEecCCC-CC
Q 039124 149 PLGLRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQA-------GGKPILFANDLDVH----KNGSIFFTDTSK-RY 215 (259)
Q Consensus 149 PlGl~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~-------~g~pl~~~Ndl~vd----~dG~IyfTDss~-~~ 215 (259)
.+.+..++ +|+++|+-.... |++|++++|++....... ++..+.+-.|..+- ++|+|-+=|-.. ..
T Consensus 146 iNsV~~~~-~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~ 224 (299)
T PF14269_consen 146 INSVDKDD-DGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDF 224 (299)
T ss_pred eeeeeecC-CccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCC
Confidence 35777777 489888755544 999998888654333221 12247777888887 777766555421 11
Q ss_pred CcccceeeeeccCCCceEEEEeCCCCcEEEec
Q 039124 216 NRVDHFFILLEGESTGRLLRYDPPTKSNSYCV 247 (259)
Q Consensus 216 ~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~ 247 (259)
.-.....|+++.+|+.+++++++-
T Consensus 225 --------~~~~~s~~~v~~ld~~~~~~~~~~ 248 (299)
T PF14269_consen 225 --------NGTEPSRGLVLELDPETMTVTLVR 248 (299)
T ss_pred --------CCCcCCCceEEEEECCCCEEEEEE
Confidence 123467899999999976665543
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=88.86 E-value=1.9 Score=26.39 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=20.7
Q ss_pred CceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 230 TGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 230 ~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
.+.|..+|+.+++...-+.--..|.++++
T Consensus 13 ~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 13 SNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 45788899988776544444578888876
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=88.85 E-value=6.4 Score=38.12 Aligned_cols=66 Identities=17% Similarity=0.204 Sum_probs=44.4
Q ss_pred cCCCcceEEEeCCCCcEEEEeCC-CceEEEECCCCeEEEeeec---CCCCCccccccEEEcCC-------CcEEEecC
Q 039124 145 WCGRPLGLRFNKDTGDLYIADAY-YGLLVVGSKGGLATPLATQ---AGGKPILFANDLDVHKN-------GSIFFTDT 211 (259)
Q Consensus 145 ~~grPlGl~~d~~~G~L~VaD~~-~Gl~~v~~~gg~~~~l~~~---~~g~pl~~~Ndl~vd~d-------G~IyfTDs 211 (259)
....|-+|+|.++ |++||+... ..|++|++.++..+.+... .......-+-||+++|+ +.||++-+
T Consensus 28 GL~~Pw~maflPD-G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt 104 (454)
T TIGR03606 28 GLNKPWALLWGPD-NQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYT 104 (454)
T ss_pred CCCCceEEEEcCC-CeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEe
Confidence 4567999999994 999999874 4588898876654433211 11112345789999876 35888754
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=88.63 E-value=7.9 Score=38.92 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=41.9
Q ss_pred cccCcCCCcceEEEeCCCCc-EEEEeCCCc-eEEEECCCCeE---------EEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 141 KHEKWCGRPLGLRFNKDTGD-LYIADAYYG-LLVVGSKGGLA---------TPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 141 ~~~~~~grPlGl~~d~~~G~-L~VaD~~~G-l~~v~~~gg~~---------~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
...+..-+|.|++++++ |. +||+..... +-.+|.+..+. ..++.+++= -..|-..++|.+|+.|.|
T Consensus 315 ~yIPVGKsPHGV~vSPD-GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~ayts 391 (635)
T PRK02888 315 RYVPVPKNPHGVNTSPD-GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTT 391 (635)
T ss_pred EEEECCCCccceEECCC-CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEe
Confidence 33467889999999996 65 566654333 66667654321 223333211 235778899999999977
Q ss_pred c
Q 039124 210 D 210 (259)
Q Consensus 210 D 210 (259)
-
T Consensus 392 l 392 (635)
T PRK02888 392 L 392 (635)
T ss_pred E
Confidence 3
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=88.50 E-value=26 Score=34.26 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=50.4
Q ss_pred cCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 76 VDEVFGPESLEFDGLG-RGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G-~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
.+.-..-.+++|.+.+ +++.++..|+.|..|+........ . + ......-..++|
T Consensus 122 ~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~-~----------l--------------~~h~~~V~sla~ 176 (493)
T PTZ00421 122 QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE-V----------I--------------KCHSDQITSLEW 176 (493)
T ss_pred cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE-E----------E--------------cCCCCceEEEEE
Confidence 3333445688999864 678899999999999986542110 0 0 111123468999
Q ss_pred eCCCCcEEEEeCCCc-eEEEECCCCe
Q 039124 155 NKDTGDLYIADAYYG-LLVVGSKGGL 179 (259)
Q Consensus 155 d~~~G~L~VaD~~~G-l~~v~~~gg~ 179 (259)
.++ |+++++-...| |..+|+.++.
T Consensus 177 spd-G~lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 177 NLD-GSLLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred ECC-CCEEEEecCCCEEEEEECCCCc
Confidence 984 88877655555 5566887764
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.41 E-value=4.3 Score=38.59 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=72.2
Q ss_pred EEccCCCCCceeEEEcCC--CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 73 LEFVDEVFGPESLEFDGL--GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 73 ~l~~~~l~gPE~ia~D~~--G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
..+.|....--++.|.|. +.-+-|+..||.+.-|+.++.. . +- ..++...|--
T Consensus 211 ~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~--~-----------l~------------~l~gH~~RVs 265 (459)
T KOG0272|consen 211 QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET--P-----------LQ------------DLEGHLARVS 265 (459)
T ss_pred EEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc--c-----------hh------------hhhcchhhhe
Confidence 345565566667788774 4457888899998888776641 0 11 2234456667
Q ss_pred eEEEeCCCCcEEEEeCCCceEEE-ECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 151 GLRFNKDTGDLYIADAYYGLLVV-GSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~Gl~~v-~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
-++|++ +|..+..-.+..=+++ |..++ .+.+.- +|. -+-.-++++.+||.+..|-.-
T Consensus 266 ~VafHP-sG~~L~TasfD~tWRlWD~~tk-~ElL~Q--EGH-s~~v~~iaf~~DGSL~~tGGl 323 (459)
T KOG0272|consen 266 RVAFHP-SGKFLGTASFDSTWRLWDLETK-SELLLQ--EGH-SKGVFSIAFQPDGSLAATGGL 323 (459)
T ss_pred eeeecC-CCceeeecccccchhhcccccc-hhhHhh--ccc-ccccceeEecCCCceeeccCc
Confidence 899999 5998887666654444 66665 244432 332 235789999999999998653
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=88.41 E-value=19 Score=33.54 Aligned_cols=134 Identities=18% Similarity=0.195 Sum_probs=69.8
Q ss_pred EEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEE
Q 039124 85 LEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIA 164 (259)
Q Consensus 85 ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~Va 164 (259)
.+++..++.+|.-..+|.|+.++..+.. ..|... |+- .-+.. ....|. .+| ---+++++..++|||.
T Consensus 189 ~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~~---~~~-~t~~e----~~~~Wr---PGG-~Q~~A~~~~~~rlyvL 255 (342)
T PF06433_consen 189 PAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGKP---WSL-LTDAE----KADGWR---PGG-WQLIAYHAASGRLYVL 255 (342)
T ss_dssp -EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEEE---EES-S-HHH----HHTTEE---E-S-SS-EEEETTTTEEEEE
T ss_pred cceECCCCeEEEEecCCEEEEEeccCCc-ccccCc---ccc-cCccc----cccCcC---Ccc-eeeeeeccccCeEEEE
Confidence 3444444446656788999998876653 222211 110 00000 001131 111 1236788767899995
Q ss_pred eC-C---------CceEEEECCCCeEEEeee-cCCCCCccccccEEEcCCCc--EEEecCCCCCCcccceeeeeccCCCc
Q 039124 165 DA-Y---------YGLLVVGSKGGLATPLAT-QAGGKPILFANDLDVHKNGS--IFFTDTSKRYNRVDHFFILLEGESTG 231 (259)
Q Consensus 165 D~-~---------~Gl~~v~~~gg~~~~l~~-~~~g~pl~~~Ndl~vd~dG~--IyfTDss~~~~~~~~~~~~~e~~~~G 231 (259)
-. . .-|+.+|.++++. +.. +.+. -.+.|.|..|.. +|..+. ..|
T Consensus 256 Mh~g~~gsHKdpgteVWv~D~~t~kr--v~Ri~l~~----~~~Si~Vsqd~~P~L~~~~~-----------------~~~ 312 (342)
T PF06433_consen 256 MHQGGEGSHKDPGTEVWVYDLKTHKR--VARIPLEH----PIDSIAVSQDDKPLLYALSA-----------------GDG 312 (342)
T ss_dssp EEE--TT-TTS-EEEEEEEETTTTEE--EEEEEEEE----EESEEEEESSSS-EEEEEET-----------------TTT
T ss_pred ecCCCCCCccCCceEEEEEECCCCeE--EEEEeCCC----ccceEEEccCCCcEEEEEcC-----------------CCC
Confidence 31 1 1199999998852 221 1111 256888888765 554443 246
Q ss_pred eEEEEeCCCCcEEEecCCCCCcc
Q 039124 232 RLLRYDPPTKSNSYCVRWLGFSK 254 (259)
Q Consensus 232 rL~rydp~tg~~~vl~~~L~~pN 254 (259)
.|+.||+.||+..--+++|.-.+
T Consensus 313 ~l~v~D~~tGk~~~~~~~lG~~~ 335 (342)
T PF06433_consen 313 TLDVYDAATGKLVRSIEQLGETP 335 (342)
T ss_dssp EEEEEETTT--EEEEE---SSS-
T ss_pred eEEEEeCcCCcEEeehhccCCCc
Confidence 79999999998777777776544
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.82 E-value=9.8 Score=34.84 Aligned_cols=102 Identities=22% Similarity=0.286 Sum_probs=64.4
Q ss_pred CCCcee----EEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 79 VFGPES----LEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 79 l~gPE~----ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
+.|-|+ +.|+|+|..+-++-.|..|+-|+..+. -+.| |......|.-.++.+
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-ceN~-----------------------~~lkgHsgAVM~l~~ 98 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD-CENF-----------------------WVLKGHSGAVMELHG 98 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc-ccce-----------------------eeeccccceeEeeee
Confidence 444444 568899998888899999999986554 1222 122222344568899
Q ss_pred eCCCCcEEE-EeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 155 NKDTGDLYI-ADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 155 d~~~G~L~V-aD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
.++ ++.++ |-..+.++..|.++|+... ...+ --.+.|.++..+-|-.-+.
T Consensus 99 ~~d-~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~-h~~~vNs~~p~rrg~~lv~ 149 (338)
T KOG0265|consen 99 MRD-GSHILSCGTDKTVRGWDAETGKRIR---KHKG-HTSFVNSLDPSRRGPQLVC 149 (338)
T ss_pred ccC-CCEEEEecCCceEEEEecccceeee---hhcc-ccceeeecCccccCCeEEE
Confidence 985 65555 6666779999999886321 1111 1347787776666654443
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.62 E-value=18 Score=34.75 Aligned_cols=120 Identities=16% Similarity=0.104 Sum_probs=73.3
Q ss_pred CCCeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCC-
Q 039124 69 VTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCG- 147 (259)
Q Consensus 69 ~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g- 147 (259)
...+.++.+.-..++|+++-.+.. +.+|..+|.|.-|+.-... -.|....++. +- ..-...+
T Consensus 317 eesqlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KKk-plf~~~~AHg---v~------------~~~~~~~~ 379 (479)
T KOG0299|consen 317 EESQLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKKK-PLFTSRLAHG---VI------------PELDPVNG 379 (479)
T ss_pred ccceeeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeecccC-ceeEeecccc---cc------------CCcccccc
Confidence 446778888767899999976666 8999999999999875442 1232222211 00 0001111
Q ss_pred --CcceEEEeCCCCcEEEEeCCCc---eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEe
Q 039124 148 --RPLGLRFNKDTGDLYIADAYYG---LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFT 209 (259)
Q Consensus 148 --rPlGl~~d~~~G~L~VaD~~~G---l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfT 209 (259)
.-.+|+.-+ .-+|++.-+..| |+++...-..++.+. ++. -..|.|.|++..+|. |+++
T Consensus 380 ~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~r~i~~l~-~ls--~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 380 NFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGLRAINLLY-SLS--LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccceeeeEecc-cCceEEecCCCCceEEEEecCCccccceee-ecc--cccEEEEEEEccCCCEEEEe
Confidence 224788777 468877766666 666654333334333 221 134899999999999 5554
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=87.06 E-value=7.1 Score=38.88 Aligned_cols=117 Identities=16% Similarity=0.191 Sum_probs=69.5
Q ss_pred CCCEEEEEcCC------CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEE
Q 039124 90 LGRGPYTGLAD------GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYI 163 (259)
Q Consensus 90 ~G~~~yt~~~~------G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~V 163 (259)
+|.+|.+|-.+ ..++++++....|+..+-. .....-.|++.- +|.||+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M------------------------~~~R~~~~v~~l--~g~iYa 385 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM------------------------NTKRSDFGVAVL--DGKLYA 385 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCc------------------------cCccccceeEEE--CCEEEE
Confidence 45555555545 3577888877767653211 111122577766 489999
Q ss_pred EeCCCc------eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEe
Q 039124 164 ADAYYG------LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYD 237 (259)
Q Consensus 164 aD~~~G------l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ryd 237 (259)
.-...| +-++||.+.+-+.++.-. ...-.--++.-+|.||+.-....- .+..-.+.+||
T Consensus 386 vGG~dg~~~l~svE~YDp~~~~W~~va~m~----~~r~~~gv~~~~g~iYi~GG~~~~-----------~~~l~sve~YD 450 (571)
T KOG4441|consen 386 VGGFDGEKSLNSVECYDPVTNKWTPVAPML----TRRSGHGVAVLGGKLYIIGGGDGS-----------SNCLNSVECYD 450 (571)
T ss_pred EeccccccccccEEEecCCCCcccccCCCC----cceeeeEEEEECCEEEEEcCcCCC-----------ccccceEEEEc
Confidence 755443 778899987655444221 122233334458899997653220 11345799999
Q ss_pred CCCCcEEEec
Q 039124 238 PPTKSNSYCV 247 (259)
Q Consensus 238 p~tg~~~vl~ 247 (259)
|.|++.+.+.
T Consensus 451 P~t~~W~~~~ 460 (571)
T KOG4441|consen 451 PETNTWTLIA 460 (571)
T ss_pred CCCCceeecC
Confidence 9999887765
|
|
| >TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat | Back alignment and domain information |
|---|
Probab=86.83 E-value=1.9 Score=26.34 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=23.1
Q ss_pred CCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEEe
Q 039124 203 NGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYC 246 (259)
Q Consensus 203 dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl 246 (259)
||++|.|-+..- ....|.|+|++++ +..++|
T Consensus 1 dg~lYGTT~~GG------------~~~~GTvf~~~~~-g~~t~L 31 (34)
T TIGR03803 1 GGTLYGTTSGGG------------ASGFGTLYRLSTA-GGTTVL 31 (34)
T ss_pred CCcEEEEcccCC------------CCCceeEEEEcCC-CCeEEE
Confidence 688999987432 4567999999998 555665
|
This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location. |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.83 E-value=13 Score=34.35 Aligned_cols=34 Identities=26% Similarity=0.089 Sum_probs=27.5
Q ss_pred CCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 039124 78 EVFGPESLEFDGLGRGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~ 111 (259)
...-=-|++|.++|+.+.|+..|..|..|+.-.+
T Consensus 64 H~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 64 HVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred cccceeEEEecCCCCEeeeecCCceeEEEeccCC
Confidence 3444458999999999999999999999986443
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=86.81 E-value=29 Score=33.02 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=45.7
Q ss_pred eEEEeCCCCc-EE-EEeCC--CceEEEECC--CCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceee
Q 039124 151 GLRFNKDTGD-LY-IADAY--YGLLVVGSK--GGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFI 223 (259)
Q Consensus 151 Gl~~d~~~G~-L~-VaD~~--~Gl~~v~~~--gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~ 223 (259)
..++.++ |+ |+ ++|.. ..|+.++.+ ++..+.+... .+ ........|||+ |+|+...
T Consensus 285 ~p~wSPD-G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~-~~----~~~~p~wSPDG~~Laf~~~~----------- 347 (428)
T PRK01029 285 NPSFSPD-GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK-YR----NSSCPAWSPDGKKIAFCSVI----------- 347 (428)
T ss_pred CeEECCC-CCEEEEEECCCCCceEEEEECcccccceEEeccC-CC----CccceeECCCCCEEEEEEcC-----------
Confidence 4588885 76 43 34432 237877654 3434444321 11 234678899997 6665432
Q ss_pred eeccCCCceEEEEeCCCCcEEEecCC
Q 039124 224 LLEGESTGRLLRYDPPTKSNSYCVRW 249 (259)
Q Consensus 224 ~~e~~~~GrL~rydp~tg~~~vl~~~ 249 (259)
....+|+.||+++++.+.+..+
T Consensus 348 ----~g~~~I~v~dl~~g~~~~Lt~~ 369 (428)
T PRK01029 348 ----KGVRQICVYDLATGRDYQLTTS 369 (428)
T ss_pred ----CCCcEEEEEECCCCCeEEccCC
Confidence 1124788889888888777644
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=86.73 E-value=41 Score=34.59 Aligned_cols=109 Identities=10% Similarity=0.034 Sum_probs=58.4
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcE
Q 039124 82 PESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDL 161 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L 161 (259)
=.+++|+++|+.+.|+..||.|..|+..... .. ......+. ....+ .....++++.+..+..
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~-~~----~~~~~~~~------------~~~~~-~~~v~~l~~~~~~~~~ 547 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESII-KD----GRDIHYPV------------VELAS-RSKLSGICWNSYIKSQ 547 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCccc-cc----ccccccce------------EEecc-cCceeeEEeccCCCCE
Confidence 3468999999988899999999999864310 00 00000000 00011 1223577777633555
Q ss_pred EEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcC-CCcEEEecCC
Q 039124 162 YIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHK-NGSIFFTDTS 212 (259)
Q Consensus 162 ~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTDss 212 (259)
+++-.+.| |...|..+++.... ..+. -...+++++++ +|.+++|-+.
T Consensus 548 las~~~Dg~v~lWd~~~~~~~~~---~~~H-~~~V~~l~~~p~~~~~L~Sgs~ 596 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQLVTE---MKEH-EKRVWSIDYSSADPTLLASGSD 596 (793)
T ss_pred EEEEeCCCeEEEEECCCCeEEEE---ecCC-CCCEEEEEEcCCCCCEEEEEcC
Confidence 55544555 44458776642221 2221 12467888875 6776666443
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=86.48 E-value=30 Score=33.55 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=53.1
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
..=.+++|..+|.++.|+..+|.+.-|+.++....++. .|. |--..|+..++ |
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~-------------------------~Hk-gPI~slKWnk~-G 288 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLG-------------------------QHK-GPIFSLKWNKK-G 288 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhh-------------------------ccC-CceEEEEEcCC-C
Confidence 34458999999999999999999999998876332221 111 11247888884 7
Q ss_pred cEEEE-eCCCceEEEECCCCeEEEeee
Q 039124 160 DLYIA-DAYYGLLVVGSKGGLATPLAT 185 (259)
Q Consensus 160 ~L~Va-D~~~Gl~~v~~~gg~~~~l~~ 185 (259)
+-+++ +...-+...|..+|+..+...
T Consensus 289 ~yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 289 TYILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred CEEEeccCCccEEEEeccCceEEEeee
Confidence 65554 333346677877777666554
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=85.82 E-value=31 Score=32.39 Aligned_cols=103 Identities=24% Similarity=0.288 Sum_probs=61.0
Q ss_pred CCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEE-EEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 78 EVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWET-FAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~-fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
....=|.+.|.|.+.++.++..||.||.|..+.+.... |. +.+ . .| .|| +|.+
T Consensus 147 e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~--Gh~--~-~c----------------t~G-----~f~p 200 (399)
T KOG0296|consen 147 EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS--GHN--S-PC----------------TCG-----EFIP 200 (399)
T ss_pred ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec--CCC--C-Cc----------------ccc-----cccC
Confidence 46677888999999999999999999999876532221 21 111 0 12 233 3456
Q ss_pred CCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 157 DTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 157 ~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
+ |..+++-...| |.+.++++|+...-.+..++. +.-.+.+..+|...++-
T Consensus 201 d-GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~---~~~~~~~~~~~~~~~~g 251 (399)
T KOG0296|consen 201 D-GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGL---ELPCISLNLAGSTLTKG 251 (399)
T ss_pred C-CceEEEEecCceEEEEecCCCceeEEecccccC---cCCccccccccceeEec
Confidence 4 65555444455 667799999644444444443 23344455555544443
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=85.48 E-value=6.1 Score=37.42 Aligned_cols=57 Identities=16% Similarity=0.094 Sum_probs=31.4
Q ss_pred CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-E-EEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEE
Q 039124 168 YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-I-FFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSY 245 (259)
Q Consensus 168 ~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-I-yfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~v 245 (259)
..++.+|.+++++++|.... | -+.. +..+.++.+ + ||-+. -+|+++|.+|++.++
T Consensus 60 ~nly~lDL~t~~i~QLTdg~-g--~~~~-g~~~s~~~~~~~Yv~~~-------------------~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 60 RNLYLLDLATGEITQLTDGP-G--DNTF-GGFLSPDDRALYYVKNG-------------------RSLRRVDLDTLEERV 116 (386)
T ss_dssp -EEEEEETTT-EEEE---SS----B-TT-T-EE-TTSSEEEEEETT-------------------TEEEEEETTT--EEE
T ss_pred cceEEEEcccCEEEECccCC-C--CCcc-ceEEecCCCeEEEEECC-------------------CeEEEEECCcCcEEE
Confidence 35999999999999997642 2 1122 556666655 4 44432 168889988888876
Q ss_pred ec
Q 039124 246 CV 247 (259)
Q Consensus 246 l~ 247 (259)
+.
T Consensus 117 vy 118 (386)
T PF14583_consen 117 VY 118 (386)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=85.40 E-value=22 Score=36.78 Aligned_cols=77 Identities=12% Similarity=0.120 Sum_probs=41.6
Q ss_pred CcEEEEeCCCceEEEECCCCeEEEeeecCCCC----------C---ccccccEEEcCCCcEEEecCCCCCCcccceeeee
Q 039124 159 GDLYIADAYYGLLVVGSKGGLATPLATQAGGK----------P---ILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILL 225 (259)
Q Consensus 159 G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~----------p---l~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~ 225 (259)
+++|+......|+.+|.++|+...-. ..+|. + .....--.|. +|.||+..+..+.. -
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~f-g~~G~vdl~~~~g~~~~g~~~~ts~P~V~-~g~VIvG~~v~d~~--------~ 330 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDF-GNNGTVDLTAGMGTTPPGYYYPTSPPLVA-GTTVVIGGRVADNY--------S 330 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEe-cCCCceeeecccCcCCCcccccccCCEEE-CCEEEEEecccccc--------c
Confidence 47887766666888888888533111 11110 0 0011112222 56777765543211 1
Q ss_pred ccCCCceEEEEeCCCCcEEE
Q 039124 226 EGESTGRLLRYDPPTKSNSY 245 (259)
Q Consensus 226 e~~~~GrL~rydp~tg~~~v 245 (259)
+..+.|.|.-||.+||+..-
T Consensus 331 ~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 331 TDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred ccCCCcEEEEEECCCCcEee
Confidence 12467899999999887653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=85.24 E-value=4.6 Score=38.87 Aligned_cols=92 Identities=14% Similarity=0.155 Sum_probs=36.9
Q ss_pred CCCcceEEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeec--------------CCCCCc-cccccEEEcCCCc-EEE
Q 039124 146 CGRPLGLRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQ--------------AGGKPI-LFANDLDVHKNGS-IFF 208 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~--------------~~g~pl-~~~Ndl~vd~dG~-Iyf 208 (259)
.+-+..|-+.-|+--|||+....| +.++|...-..-.++.+ +.|+++ ..|+=+-++.||+ +||
T Consensus 311 P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv 390 (461)
T PF05694_consen 311 PPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV 390 (461)
T ss_dssp ------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEE
T ss_pred CCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence 344567767776678999998888 67777432111122211 122222 2578899999996 999
Q ss_pred ecCCCC-CCcccceeeeeccCCCceEEEEeCCC
Q 039124 209 TDTSKR-YNRVDHFFILLEGESTGRLLRYDPPT 240 (259)
Q Consensus 209 TDss~~-~~~~~~~~~~~e~~~~GrL~rydp~t 240 (259)
|.|-.. |+ ++|.-+.. +..+-++++|-++
T Consensus 391 TnSLys~WD-~qfYP~~~--~~g~~m~~iDvd~ 420 (461)
T PF05694_consen 391 TNSLYSAWD-KQFYPDGV--KNGSWMLKIDVDT 420 (461)
T ss_dssp E----HHHH-HHHSTT--------EEEEEEE-T
T ss_pred Eeecccccc-cccCCCcc--ccccEEEEEEecC
Confidence 998632 22 22322222 1234566666443
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.58 E-value=2.7 Score=41.60 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=63.2
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEE
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYI 163 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~V 163 (259)
.+++|.+|+ +|+++.+| +.++++...+.... .+. + + --+-+-+..|. .|+|||
T Consensus 169 aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql--~s~---------~----------~---dk~I~al~~d~-qg~LWV 221 (671)
T COG3292 169 ALVFDANGR-LWVGTPDG-LSYFDAGRGKALQL--ASP---------P----------L---DKAINALIADV-QGRLWV 221 (671)
T ss_pred eeeeeccCc-EEEecCCc-ceEEccccceEEEc--CCC---------c----------c---hhhHHHHHHHh-cCcEEE
Confidence 467888887 89998887 78888765432211 000 0 0 01123455677 499998
Q ss_pred EeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 164 ADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 164 aD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
. .+.|++..+++|-... ......|....+-+.-|.+|.+||....
T Consensus 222 G-TdqGv~~~e~~G~~~s---n~~~~lp~~~I~ll~qD~qG~lWiGTen 266 (671)
T COG3292 222 G-TDQGVYLQEAEGWRAS---NWGPMLPSGNILLLVQDAQGELWIGTEN 266 (671)
T ss_pred E-eccceEEEchhhcccc---ccCCCCcchheeeeecccCCCEEEeecc
Confidence 7 5789999998874322 2233345556777788889999997764
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.29 E-value=25 Score=33.69 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=42.3
Q ss_pred EEEeCCCCc-EEEEeCCC---ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeec
Q 039124 152 LRFNKDTGD-LYIADAYY---GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLE 226 (259)
Q Consensus 152 l~~d~~~G~-L~VaD~~~---Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e 226 (259)
-+|.++ |. |.++-... .|+.+|..++..+.|. ..+|.. . .=...|||+ |+|+-...
T Consensus 243 P~fspD-G~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt-~~~gi~--~--~Ps~spdG~~ivf~Sdr~------------- 303 (425)
T COG0823 243 PAFSPD-GSKLAFSSSRDGSPDIYLMDLDGKNLPRLT-NGFGIN--T--SPSWSPDGSKIVFTSDRG------------- 303 (425)
T ss_pred ccCCCC-CCEEEEEECCCCCccEEEEcCCCCcceecc-cCCccc--c--CccCCCCCCEEEEEeCCC-------------
Confidence 356664 43 33333322 3888998888755543 222211 1 334568897 66663221
Q ss_pred cCCCceEEEEeCCCCcEEEecC
Q 039124 227 GESTGRLLRYDPPTKSNSYCVR 248 (259)
Q Consensus 227 ~~~~GrL~rydp~tg~~~vl~~ 248 (259)
+.+ ++|+||+++++++.+-.
T Consensus 304 G~p--~I~~~~~~g~~~~riT~ 323 (425)
T COG0823 304 GRP--QIYLYDLEGSQVTRLTF 323 (425)
T ss_pred CCc--ceEEECCCCCceeEeec
Confidence 222 78888888776655543
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.24 E-value=13 Score=37.01 Aligned_cols=61 Identities=25% Similarity=0.320 Sum_probs=39.3
Q ss_pred ceEEEeCCCCcEEEEeCCCceEEEE-CCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCC
Q 039124 150 LGLRFNKDTGDLYIADAYYGLLVVG-SKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKR 214 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~Gl~~v~-~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~ 214 (259)
+-+.-|++ |++||. ..+|+.+.. ++.+....+. --+.+....|.+..|.+|.+|+++....
T Consensus 250 ~ll~qD~q-G~lWiG-TenGl~r~~l~rq~Lq~~~~--~~~l~~S~vnsL~~D~dGsLWv~t~~gi 311 (671)
T COG3292 250 LLLVQDAQ-GELWIG-TENGLWRTRLPRQGLQIPLS--KMHLGVSTVNSLWLDTDGSLWVGTYGGI 311 (671)
T ss_pred eeeecccC-CCEEEe-ecccceeEecCCCCcccccc--ccCCccccccceeeccCCCEeeeccCce
Confidence 44556664 888886 346776554 3334222222 2234566789999999999999988743
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.14 E-value=3.3 Score=36.23 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=37.2
Q ss_pred CcEEEEeCC--CceEEEECCCCeEEEeee--------cCCCCCccccccEEEcCCC-cEEEecC
Q 039124 159 GDLYIADAY--YGLLVVGSKGGLATPLAT--------QAGGKPILFANDLDVHKNG-SIFFTDT 211 (259)
Q Consensus 159 G~L~VaD~~--~Gl~~v~~~gg~~~~l~~--------~~~g~pl~~~Ndl~vd~dG-~IyfTDs 211 (259)
|.|| |+-. ..|.+++|++|++..+.+ ..++...+-+|++|.++++ ++|+|--
T Consensus 186 G~ly-ANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 186 GELY-ANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred cEEE-EeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 6676 3322 259999999998766553 1344456789999999987 7999864
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=83.91 E-value=21 Score=35.08 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=53.6
Q ss_pred CeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 71 GKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
......|....=.++++.++|..+|++..||.|..|+...+. |+ + ..-+.....-.
T Consensus 312 ~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~---------------~~-~--------~~g~~h~nqI~ 367 (603)
T KOG0318|consen 312 VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGT---------------SD-R--------LAGKGHTNQIK 367 (603)
T ss_pred hhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcc---------------cc-c--------cccccccceEE
Confidence 344455666666788888999999999999999999876541 11 0 00011122335
Q ss_pred eEEEeCCCCcEEEEeCCCceEEEECC
Q 039124 151 GLRFNKDTGDLYIADAYYGLLVVGSK 176 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~Gl~~v~~~ 176 (259)
|++... .+.++.+-...-|.+++..
T Consensus 368 ~~~~~~-~~~~~t~g~Dd~l~~~~~~ 392 (603)
T KOG0318|consen 368 GMAASE-SGELFTIGWDDTLRVISLK 392 (603)
T ss_pred EEeecC-CCcEEEEecCCeEEEEecc
Confidence 787777 4889888777767777653
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=83.51 E-value=31 Score=33.77 Aligned_cols=105 Identities=11% Similarity=0.095 Sum_probs=63.8
Q ss_pred EEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceE
Q 039124 73 LEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGL 152 (259)
Q Consensus 73 ~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl 152 (259)
+..++.+..=|++.++++|..+.++...++||.++.+.+.... .| ...-|--.++
T Consensus 395 kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~------------id-------------kS~~~lItdf 449 (668)
T COG4946 395 KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRL------------ID-------------KSEYGLITDF 449 (668)
T ss_pred EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeE------------ec-------------ccccceeEEE
Confidence 3445567788899999999988888889999999887663221 11 0112334577
Q ss_pred EEeCCCCcEEEEeC----C--CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEe
Q 039124 153 RFNKDTGDLYIADA----Y--YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFT 209 (259)
Q Consensus 153 ~~d~~~G~L~VaD~----~--~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfT 209 (259)
.+++ +++.+ |=+ | ..|...|.+|+++-.+.++. + .--.-++|+||+ +||-
T Consensus 450 ~~~~-nsr~i-AYafP~gy~tq~Iklydm~~~Kiy~vTT~t-a----~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 450 DWHP-NSRWI-AYAFPEGYYTQSIKLYDMDGGKIYDVTTPT-A----YDFSPAFDPDGRYLYFL 506 (668)
T ss_pred EEcC-CceeE-EEecCcceeeeeEEEEecCCCeEEEecCCc-c----cccCcccCCCCcEEEEE
Confidence 7777 36643 422 2 13666688887654444331 1 111235788887 7775
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=83.33 E-value=5 Score=23.86 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=28.0
Q ss_pred EccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 039124 74 EFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWM 107 (259)
Q Consensus 74 l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~ 107 (259)
.+.+.-..-.+++|.++++.+.++..|+.|..|+
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3455566778999999999999999999998775
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.01 E-value=12 Score=35.69 Aligned_cols=111 Identities=15% Similarity=0.178 Sum_probs=73.1
Q ss_pred CeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 71 GKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
..+++.|.+..=-+++|+|+|..+-|+..|+.+..|+..... ....++ .| -.--.
T Consensus 337 ~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~-~ly~ip-----------------------AH-~nlVS 391 (459)
T KOG0272|consen 337 CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS-ELYTIP-----------------------AH-SNLVS 391 (459)
T ss_pred EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccc-cceecc-----------------------cc-cchhh
Confidence 456667777777899999999999999999988888876542 111111 01 11123
Q ss_pred eEEEeCCCCcEEEEeCCCceEEE-ECCCCe-EEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 151 GLRFNKDTGDLYIADAYYGLLVV-GSKGGL-ATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~Gl~~v-~~~gg~-~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
.++|.++.|..++.-+|.+..++ ...+.. ...|+. -++ ..-.+++.+||..+.|-+
T Consensus 392 ~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG-He~----kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 392 QVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG-HEG----KVISLDISPDSQAIATSS 449 (459)
T ss_pred heEecccCCeEEEEcccCcceeeecCCCcccchhhcC-Ccc----ceEEEEeccCCceEEEec
Confidence 78888766888888777776666 444443 222322 233 355899999999888765
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=82.43 E-value=51 Score=32.49 Aligned_cols=106 Identities=11% Similarity=0.048 Sum_probs=69.1
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
-..|+++|+.+++...-++-.||+|..+...+.....++ .| +..-+.+.-+++.++
T Consensus 443 ~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~---------~~--------------~~h~a~iT~vaySpd- 498 (603)
T KOG0318|consen 443 GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEA---------KL--------------LEHRAAITDVAYSPD- 498 (603)
T ss_pred ccccceEEEcCCCCEEEEecccceEEEEEecCCccccee---------ee--------------ecccCCceEEEECCC-
Confidence 367899999999998889999999888777664222211 11 223455678999995
Q ss_pred CcEEE-EeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 159 GDLYI-ADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 159 G~L~V-aD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
|..++ +|+..-++..|.++.+.. .... +---...|.++=.|+....-|-+
T Consensus 499 ~~yla~~Da~rkvv~yd~~s~~~~--~~~w-~FHtakI~~~aWsP~n~~vATGS 549 (603)
T KOG0318|consen 499 GAYLAAGDASRKVVLYDVASREVK--TNRW-AFHTAKINCVAWSPNNKLVATGS 549 (603)
T ss_pred CcEEEEeccCCcEEEEEcccCcee--ccee-eeeeeeEEEEEeCCCceEEEecc
Confidence 76654 688777888888776531 1110 00112567788788776666644
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.15 E-value=12 Score=34.32 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=39.4
Q ss_pred CcceEEEeCCCCcEEE-EeC------CCceEEEECCCCeEEEe-eecCCC-----------CCccccccEEEcCCCcEEE
Q 039124 148 RPLGLRFNKDTGDLYI-ADA------YYGLLVVGSKGGLATPL-ATQAGG-----------KPILFANDLDVHKNGSIFF 208 (259)
Q Consensus 148 rPlGl~~d~~~G~L~V-aD~------~~Gl~~v~~~gg~~~~l-~~~~~g-----------~pl~~~Ndl~vd~dG~Iyf 208 (259)
.|+-+.+..| |+++| |+. .+|..+++.++.+-+.. .+...| .......-+++++||+|||
T Consensus 163 GpHev~lm~D-GrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwf 241 (366)
T COG3490 163 GPHEVTLMAD-GRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWF 241 (366)
T ss_pred CcceeEEecC-CcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEE
Confidence 4888888885 87765 443 34555666655543322 221222 1244667899999999999
Q ss_pred ecC
Q 039124 209 TDT 211 (259)
Q Consensus 209 TDs 211 (259)
.--
T Consensus 242 gcQ 244 (366)
T COG3490 242 GCQ 244 (366)
T ss_pred EEE
Confidence 854
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=81.87 E-value=28 Score=35.11 Aligned_cols=92 Identities=10% Similarity=0.003 Sum_probs=55.5
Q ss_pred CCCeEEccCCCCCceeEEEcCCCCEEEEEcC-CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCC
Q 039124 69 VTGKLEFVDEVFGPESLEFDGLGRGPYTGLA-DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCG 147 (259)
Q Consensus 69 ~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~-~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g 147 (259)
.-...+..+ ..|++++++++|+.+|+... +..|-.|+..... ..|+.....+. |- ......+-
T Consensus 312 ~v~~yIPVG--KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k-~~~~~~~~~~~---~v----------vaevevGl 375 (635)
T PRK02888 312 ALTRYVPVP--KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD-DLFDGKIKPRD---AV----------VAEPELGL 375 (635)
T ss_pred ceEEEEECC--CCccceEECCCCCEEEEeCCCCCcEEEEEChhhh-hhhhccCCccc---eE----------EEeeccCC
Confidence 344556665 79999999999998887654 6677777765431 11111000000 00 11224466
Q ss_pred CcceEEEeCCCCcEEEEeC-CCceEEEECCC
Q 039124 148 RPLGLRFNKDTGDLYIADA-YYGLLVVGSKG 177 (259)
Q Consensus 148 rPlGl~~d~~~G~L~VaD~-~~Gl~~v~~~g 177 (259)
+|+-.+||.+ |+.|++=. ...+.+.+.+.
T Consensus 376 GPLHTaFDg~-G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 376 GPLHTAFDGR-GNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CcceEEECCC-CCEEEeEeecceeEEEehHH
Confidence 7999999995 99997521 23477777543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=81.25 E-value=47 Score=32.55 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=37.9
Q ss_pred cCcCCCcceEEEeCCCCc-EEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc
Q 039124 143 EKWCGRPLGLRFNKDTGD-LYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS 205 (259)
Q Consensus 143 ~~~~grPlGl~~d~~~G~-L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~ 205 (259)
+...|+--.+++++ +|. +.||+-..-|+.+|.++|.++.+-.+..| ..-|.+..++++
T Consensus 398 e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~----lItdf~~~~nsr 456 (668)
T COG4946 398 EKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG----LITDFDWHPNSR 456 (668)
T ss_pred eCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccc----eeEEEEEcCCce
Confidence 34456666778888 476 55566656699999999976655333333 355666666666
|
|
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=80.79 E-value=3.3 Score=23.99 Aligned_cols=15 Identities=27% Similarity=0.244 Sum_probs=12.2
Q ss_pred CceEEEEeCCCCcEE
Q 039124 230 TGRLLRYDPPTKSNS 244 (259)
Q Consensus 230 ~GrL~rydp~tg~~~ 244 (259)
.|+|+.+|.++|+..
T Consensus 15 ~g~l~a~d~~~G~~~ 29 (33)
T smart00564 15 DGTLYALDAKTGEIL 29 (33)
T ss_pred CCEEEEEEcccCcEE
Confidence 478999999888764
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats | Back alignment and domain information |
|---|
Probab=80.62 E-value=2.2 Score=23.69 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=15.5
Q ss_pred CccccccEEEcCCCcEEEec
Q 039124 191 PILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 191 pl~~~Ndl~vd~dG~IyfTD 210 (259)
+-+...++..|++|+||++.
T Consensus 3 ~~n~I~~i~~D~~G~lWigT 22 (24)
T PF07494_consen 3 PNNNIYSIYEDSDGNLWIGT 22 (24)
T ss_dssp SSSCEEEEEE-TTSCEEEEE
T ss_pred CCCeEEEEEEcCCcCEEEEe
Confidence 34567899999999999974
|
These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=80.20 E-value=9.7 Score=39.34 Aligned_cols=84 Identities=13% Similarity=0.109 Sum_probs=45.9
Q ss_pred CCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCc------ccceeeeeccCCCc
Q 039124 158 TGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNR------VDHFFILLEGESTG 231 (259)
Q Consensus 158 ~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~------~~~~~~~~e~~~~G 231 (259)
+|.||+|+....|+.+|.++|+ +.+.-......-.... .....|..|+.+++..-.. ...-..++-....|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk-~lW~~d~~~~~~~~~~--~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGK-EKWKFDPKLKTEAGRQ--HQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCc-EEEEEcCCCCcccccc--cccccceEEecCCcccccccccccccccCCEEEEecCCC
Confidence 4799999988889999999986 4443322211000000 1223566666543221000 00001223345578
Q ss_pred eEEEEeCCCCcEE
Q 039124 232 RLLRYDPPTKSNS 244 (259)
Q Consensus 232 rL~rydp~tg~~~ 244 (259)
||+.+|.+||+..
T Consensus 271 ~LiALDA~TGk~~ 283 (764)
T TIGR03074 271 RLIALDADTGKLC 283 (764)
T ss_pred eEEEEECCCCCEE
Confidence 9999999998765
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 259 | ||||
| 2v91_A | 302 | Structure Of Strictosidine Synthase In Complex With | 5e-26 | ||
| 2fp8_A | 322 | Structure Of Strictosidine Synthase, The Biosynthet | 5e-26 | ||
| 2fpb_A | 322 | Structure Of Strictosidine Synthase, The Biosynthet | 6e-24 |
| >pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302 | Back alignment and structure |
|
| >pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322 | Back alignment and structure |
|
| >pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 2e-51
Identities = 61/179 (34%), Positives = 89/179 (49%), Gaps = 7/179 (3%)
Query: 65 LSRLVTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWS 124
LS + ++ + P S FD +G YT + DGR++++ G N G+ FA + W+
Sbjct: 4 LSSPILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWN 63
Query: 125 EKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLA 184
+ C D+ CGR + +N LYI D YY L VVGS+GG AT LA
Sbjct: 64 KAFCENSTDAEK------RPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLA 117
Query: 185 TQAGGKPILFANDLDV-HKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKS 242
T G P + + V + G ++FTD S Y+ I+ + TGRL++YDP TK
Sbjct: 118 TSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 5e-15
Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 23/147 (15%)
Query: 92 RGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLG 151
G G I+R + G +T + G P G
Sbjct: 37 EVEVNGKPAGEILRIDLKT-GKKTVICKPE--------------------VNGYGGIPAG 75
Query: 152 LRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211
+ ++D L++AD GLLVV + G + G+ + ND G+++ T
Sbjct: 76 CQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAP 135
Query: 212 SKRYNRVDHFFILLEGESTGRLLRYDP 238
+ + E G + +
Sbjct: 136 A--GEVAPADYTRSMQEKFGSIYCFTT 160
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 6e-07
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 2/93 (2%)
Query: 147 GRPLGLRFNKDTGDLYIAD-AYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS 205
G NK G L L GG +A GK + ND+ + +GS
Sbjct: 69 HHQNGHCLNKQ-GHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS 127
Query: 206 IFFTDTSKRYNRVDHFFILLEGESTGRLLRYDP 238
++F+D + ++ + + + R P
Sbjct: 128 LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 4e-06
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 1/92 (1%)
Query: 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSI 206
G + L + + G A L + GK + NDL V ++G+I
Sbjct: 86 AFTNGNAVDAQ-QRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAI 144
Query: 207 FFTDTSKRYNRVDHFFILLEGESTGRLLRYDP 238
+FTD + + + R P
Sbjct: 145 WFTDPPFGLRKPSQGCPADPELAHHSVYRLPP 176
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 14/97 (14%), Positives = 26/97 (26%), Gaps = 19/97 (19%)
Query: 147 GRPLGLRFNKDTGDLYIAD-----AYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVH 201
P ++ +KD G L++ + G+ G + +D+
Sbjct: 87 ANPAAIKIHKD-GRLFVCYLGDFKSTGGIFAATENGDNLQDIIE--DLSTAYCIDDMVFD 143
Query: 202 KNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDP 238
G +FTD G + P
Sbjct: 144 SKGGFYFTDFRGY-----------STNPLGGVYYVSP 169
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306 | Back alignment and structure |
|---|
Score = 39.6 bits (92), Expect = 6e-04
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 14/99 (14%)
Query: 147 GRPLGLRFNKDTGDLYIADAYYG---LLVVGSKGGLATPLATQAGGKPILFANDLDVHKN 203
G+ GL F + GDL ++ + G L T F N + +
Sbjct: 72 GKVSGLAFTSN-GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAI---FLNGITPLSD 127
Query: 204 GSIFFTDTSK-RYNRVDHFFILLEGESTGRLLRYDPPTK 241
D+ + +D + +G + P
Sbjct: 128 TQYLTADSYRGAIWLIDV------VQPSGSIWLEHPMLA 160
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 259 | |||
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.91 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 99.79 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.76 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.73 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.72 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.61 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.58 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.57 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.56 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.56 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.55 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.54 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.54 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.53 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.53 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.52 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.52 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.52 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.51 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.5 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.5 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.49 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.48 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.47 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.46 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.45 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.44 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.43 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.42 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.4 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.39 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.39 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.36 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.36 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.34 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.34 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.33 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.33 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.32 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.31 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.31 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.3 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.3 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.29 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.27 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.27 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.26 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.25 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.22 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.22 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.21 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.21 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.21 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.19 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.12 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.12 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.06 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.06 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.04 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.02 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.98 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.92 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.91 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.86 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.86 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.85 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.83 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.81 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 98.78 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.74 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.69 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 98.66 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.66 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 98.63 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 98.55 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 98.51 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.44 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 98.43 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 98.37 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 98.37 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.36 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 98.34 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.3 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 98.27 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.26 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.26 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 98.22 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 98.18 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 98.17 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 98.13 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 98.13 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.11 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.11 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.1 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.07 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 98.03 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.0 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 97.96 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.92 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 97.92 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.9 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.9 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.89 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.86 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 97.83 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.77 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 97.76 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.74 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.7 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.69 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 97.67 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.63 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.61 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.59 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.58 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.51 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 97.48 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 97.48 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.46 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.45 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.42 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 97.38 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.37 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 97.36 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 97.34 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.29 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.28 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 97.26 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.25 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.24 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 97.19 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 97.15 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 97.15 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 97.13 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 97.13 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.05 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 97.02 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 97.02 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 96.98 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 96.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 96.94 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.91 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 96.88 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 96.86 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 96.82 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 96.8 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 96.74 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 96.74 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 96.72 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 96.7 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 96.65 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 96.62 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 96.62 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.62 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 96.57 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 96.56 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 96.56 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 96.54 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 96.49 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 96.44 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 96.43 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 96.41 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 96.37 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 96.35 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 96.35 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 96.33 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 96.29 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.26 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 96.26 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 96.23 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 96.22 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 96.21 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 96.19 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 96.18 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 96.18 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 96.16 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 96.14 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 96.13 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 96.12 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 96.12 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 96.11 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 96.09 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 96.07 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 96.05 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 96.03 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 96.03 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 95.99 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 95.98 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 95.89 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 95.89 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 95.8 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.69 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 95.68 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 95.66 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 95.65 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 95.64 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 95.63 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 95.59 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 95.55 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 95.55 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 95.5 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 95.47 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 95.45 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 95.44 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 95.44 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 95.41 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 95.41 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 95.41 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 95.37 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 95.35 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 95.34 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 95.29 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 95.28 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.14 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 95.12 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 95.11 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 95.05 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 95.01 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 94.99 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 94.97 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 94.82 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 94.72 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 94.72 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 94.63 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 94.62 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 94.62 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 94.62 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 94.61 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 94.58 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 94.58 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 94.53 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 94.53 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 94.5 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 94.47 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 94.41 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 94.38 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 94.32 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.28 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 94.27 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 94.25 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 94.21 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 94.17 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 94.17 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 94.16 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 94.14 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 94.1 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 93.94 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 93.92 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 93.84 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 93.82 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 93.68 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 93.53 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 93.5 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 93.49 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 93.49 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 93.42 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 93.37 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 93.36 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 93.24 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 93.23 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 93.21 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 93.19 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 93.13 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 93.03 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 93.0 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 92.95 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 92.79 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 92.74 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 92.72 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 92.62 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 92.27 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 92.21 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 92.18 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 92.11 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 92.07 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 91.72 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 91.67 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 91.31 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 91.31 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 90.95 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 90.86 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 90.64 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 90.6 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 90.6 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 90.56 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 90.36 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 90.15 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 89.94 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 89.93 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 89.42 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 87.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 87.28 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 87.21 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 86.72 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 86.66 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 86.42 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 86.36 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 85.52 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 85.46 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 85.15 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 85.05 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 84.52 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 84.26 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 83.61 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 83.09 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 82.84 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 82.76 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 82.68 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 81.89 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 80.72 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 80.22 |
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-24 Score=191.08 Aligned_cols=178 Identities=34% Similarity=0.657 Sum_probs=140.7
Q ss_pred ccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 75 FVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 75 ~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
..+++.+||++++|++|+++|++..+++|+++++++..++.|+..........|++... ......+++|.||++
T Consensus 14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~p~gi~~ 87 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTD------AEKRPLCGRTYDISY 87 (322)
T ss_dssp EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCC------GGGHHHHCCEEEEEE
T ss_pred cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccc------hhccccCCCCceEEE
Confidence 45678999999999999989999999999999988755666654321111112321100 011234678999999
Q ss_pred eCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcC-CCcEEEecCCCCCCcccceeeeeccCCCceE
Q 039124 155 NKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHK-NGSIFFTDTSKRYNRVDHFFILLEGESTGRL 233 (259)
Q Consensus 155 d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL 233 (259)
++++|+|||||...||++++++++..+.++....+.++.+|||+++++ +|+|||||+...|..+++...+.+..+.|+|
T Consensus 88 ~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v 167 (322)
T 2fp8_A 88 NLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRL 167 (322)
T ss_dssp ETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred cCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceE
Confidence 963489999999989999999988777777666777888999999999 9999999998777776666666777888999
Q ss_pred EEEeCCCCcEEEecCCCCCcceeEE
Q 039124 234 LRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 234 ~rydp~tg~~~vl~~~L~~pNGval 258 (259)
++||+++++++++.+++.+||||++
T Consensus 168 ~~~d~~~~~~~~~~~~~~~p~gia~ 192 (322)
T 2fp8_A 168 IKYDPSTKETTLLLKELHVPGGAEV 192 (322)
T ss_dssp EEEETTTTEEEEEEEEESCCCEEEE
T ss_pred EEEeCCCCEEEEeccCCccCcceEE
Confidence 9999999999999999999999986
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=159.79 Aligned_cols=167 Identities=14% Similarity=0.067 Sum_probs=120.3
Q ss_pred ccCCCeEEccCCCCCceeEEEcCCCCEEEEEc-------------CCCeEEEEeCCCc--cEEEEEEeecCccccccccC
Q 039124 67 RLVTGKLEFVDEVFGPESLEFDGLGRGPYTGL-------------ADGRIVRWMGENV--GWETFAIVTSNWSEKLCARG 131 (259)
Q Consensus 67 ~L~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~-------------~~G~I~ri~~~~~--~~~~fa~~~~~~~~~~~~g~ 131 (259)
.+.+.+++ .+-..|||+++++++|. +|+++ .+|+|+++++++. ....+..+..
T Consensus 38 ~~~~C~~i-~~~~~G~EDi~~~~~G~-~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~---------- 105 (355)
T 3sre_A 38 ELPNCNLV-KGIDNGSEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN---------- 105 (355)
T ss_dssp CCSCEEEC-TTCCSCCCEEEECTTSE-EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECS----------
T ss_pred CCCCCEEe-CCCCCCcceeEEcCCCe-EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCC----------
Confidence 34566666 44457999999999876 77776 7999999998732 2222221100
Q ss_pred ccccccccccccCcCCCcceEEEeCC-CC--cEEEEeCCCc-----eEEEECCCCeEEEeeecCCCCCccccccEEEcCC
Q 039124 132 VDSTTAKQWKHEKWCGRPLGLRFNKD-TG--DLYIADAYYG-----LLVVGSKGGLATPLATQAGGKPILFANDLDVHKN 203 (259)
Q Consensus 132 ~~~~~~~~~~~~~~~grPlGl~~d~~-~G--~L~VaD~~~G-----l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~d 203 (259)
.......+|+||.+..+ +| .|||+|...+ |++++++++. ..++..++|.++++|||++++++
T Consensus 106 ---------~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~-~~~~~~~~g~~~~~pND~~v~~~ 175 (355)
T 3sre_A 106 ---------TLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS-LLHLKTIRHKLLPSVNDIVAVGP 175 (355)
T ss_dssp ---------SCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTE-EEEEEEECCTTCSSEEEEEEEET
T ss_pred ---------CCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCE-EEEEeccccCCCCCCceEEEeCC
Confidence 01123569999998652 24 6999998753 9999998774 56777788999999999999999
Q ss_pred CcEEEecCCCCCCcccc-eeeeeccCCCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 204 GSIFFTDTSKRYNRVDH-FFILLEGESTGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 204 G~IyfTDss~~~~~~~~-~~~~~e~~~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
|++|+|++.. |....+ +.+.+++.+.|+|||||| ++++++++++.+||||||
T Consensus 176 G~fyvt~~~~-ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~ 228 (355)
T 3sre_A 176 EHFYATNDHY-FIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINI 228 (355)
T ss_dssp TEEEEEESCS-CSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEE
T ss_pred CCEEecCCcE-eCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceE
Confidence 9999998753 211000 112234578999999999 478999999999999997
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-17 Score=146.85 Aligned_cols=157 Identities=15% Similarity=0.099 Sum_probs=119.7
Q ss_pred CCeEEccCCCCCceeEEEcCCCC-EEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCC
Q 039124 70 TGKLEFVDEVFGPESLEFDGLGR-GPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGR 148 (259)
Q Consensus 70 ~~e~l~~~~l~gPE~ia~D~~G~-~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gr 148 (259)
+.|.+..+ ...+|+++|+++|+ ++|++..+++|+++++++. ...+. ...+.
T Consensus 36 ~~~~l~~~-~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~-~~~~~--------------------------~~~~~ 87 (305)
T 3dr2_A 36 RLLTLYDQ-ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT-VDVLL--------------------------DATAF 87 (305)
T ss_dssp CCEEEECC-CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC-EEEEE--------------------------ESCSC
T ss_pred ceEEEecC-CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC-EEEEe--------------------------CCCCc
Confidence 45666665 78899999999988 8899999999999998654 33321 12356
Q ss_pred cceEEEeCCCCcEEEEeCC-CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccc-eeeeec
Q 039124 149 PLGLRFNKDTGDLYIADAY-YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDH-FFILLE 226 (259)
Q Consensus 149 PlGl~~d~~~G~L~VaD~~-~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~-~~~~~e 226 (259)
|.|++++++ |+||||+.. .+|.+++++ |..+.++....+.+++.||+++++++|+|||||+..... .++ -.....
T Consensus 88 ~~gl~~d~d-G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~-~~~~~~~~~~ 164 (305)
T 3dr2_A 88 TNGNAVDAQ-QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLR-KPSQGCPADP 164 (305)
T ss_dssp EEEEEECTT-SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGS-CGGGSCCCCC
T ss_pred cceeeECCC-CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcc-cccccccccc
Confidence 899999994 999999876 579999988 557777766677788899999999999999999752100 000 000011
Q ss_pred cCCCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 227 GESTGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 227 ~~~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
..+.+.|++||+++|+++.+. ++..|||+++
T Consensus 165 ~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~ 195 (305)
T 3dr2_A 165 ELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAF 195 (305)
T ss_dssp SSSCEEEEEECSSSCCCEEEE-EESSEEEEEE
T ss_pred ccCCCeEEEEcCCCCcEEEEe-cCCCCcceEE
Confidence 235689999999889988888 9999999987
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.73 E-value=7e-17 Score=141.27 Aligned_cols=156 Identities=15% Similarity=0.078 Sum_probs=119.1
Q ss_pred eEEccCCCCCceeEEEcCCCC-EEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 72 KLEFVDEVFGPESLEFDGLGR-GPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~G~-~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
+.+.. ....||+++||++|+ ++|++..+++|+++++++. ...+. ...+.|.
T Consensus 21 ~~l~~-~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~--------------------------~~~~~~~ 72 (296)
T 3e5z_A 21 RRLAD-GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEM--------------------------HPSHHQN 72 (296)
T ss_dssp EEEEC-CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEE--------------------------SSCSSEE
T ss_pred EEEec-CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEE--------------------------CCCCCcc
Confidence 44443 578999999999998 8999999999999999876 44321 1235689
Q ss_pred eEEEeCCCCcEEEEeCC-CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCC-CcccceeeeeccC
Q 039124 151 GLRFNKDTGDLYIADAY-YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRY-NRVDHFFILLEGE 228 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~-~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~-~~~~~~~~~~e~~ 228 (259)
++++++ +|+|||++.. .+|+++++++|+.+.+.....+.++..+|+++++++|++|+||+.... ...+.. ......
T Consensus 73 ~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~-~~~~~~ 150 (296)
T 3e5z_A 73 GHCLNK-QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGY-GGEMEL 150 (296)
T ss_dssp EEEECT-TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSS-CCCCCS
T ss_pred eeeECC-CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccc-cccccC
Confidence 999999 4999999976 579999997777777765556667789999999999999999974210 000000 011123
Q ss_pred CCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 229 STGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 229 ~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
..++|+++|++ ++.+.+..++..|||+++
T Consensus 151 ~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~ 179 (296)
T 3e5z_A 151 PGRWVFRLAPD-GTLSAPIRDRVKPNGLAF 179 (296)
T ss_dssp SSCEEEEECTT-SCEEEEECCCSSEEEEEE
T ss_pred CCcEEEEECCC-CCEEEeecCCCCCccEEE
Confidence 46799999998 889999999999999986
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-16 Score=140.04 Aligned_cols=152 Identities=13% Similarity=0.036 Sum_probs=120.2
Q ss_pred CeEEccCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 71 GKLEFVDEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
++.+......-+|+++|++ ++.++|+++.+++|+++++++.....+ ...+.|
T Consensus 4 ~~~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~---------------------------~~~~~~ 56 (297)
T 3g4e_A 4 IECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV---------------------------TMDAPV 56 (297)
T ss_dssp EEEEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE---------------------------ECSSCE
T ss_pred EEEEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE---------------------------eCCCce
Confidence 4566666788999999998 577899999999999999987532211 113568
Q ss_pred ceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCC
Q 039124 150 LGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGES 229 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~ 229 (259)
.+++++++ |+|||+. ..+|+++++++++.+.+.....+.+.+.+||+++|++|++||+++..... .......
T Consensus 57 ~~i~~~~d-G~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~------~~~~~~~ 128 (297)
T 3g4e_A 57 SSVALRQS-GGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETA------PAVLERH 128 (297)
T ss_dssp EEEEEBTT-SSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSB------TTBCCTT
T ss_pred EEEEECCC-CCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccc------cccccCC
Confidence 89999994 9999987 57899999999988877766566678899999999999999998653211 0012356
Q ss_pred CceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 230 TGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 230 ~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
.|+||++|++ ++.+.+..++..|||+++
T Consensus 129 ~~~l~~~d~~-g~~~~~~~~~~~pngi~~ 156 (297)
T 3g4e_A 129 QGALYSLFPD-HHVKKYFDQVDISNGLDW 156 (297)
T ss_dssp CEEEEEECTT-SCEEEEEEEESBEEEEEE
T ss_pred CcEEEEEECC-CCEEEEeeccccccceEE
Confidence 7899999997 788888899999999987
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-14 Score=124.89 Aligned_cols=158 Identities=20% Similarity=0.256 Sum_probs=115.1
Q ss_pred cCCCCCceeEEEcCCCCEEEE-------EcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCC
Q 039124 76 VDEVFGPESLEFDGLGRGPYT-------GLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGR 148 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt-------~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gr 148 (259)
.+.+..||+++||++|++|++ +..+++|+++++.+..+..+... ......+.
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---------------------~~~~~~~~ 72 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---------------------EVNGYGGI 72 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC---------------------EETTEECC
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec---------------------ccCCCCCC
Confidence 556899999999999997777 67889999999765544433110 00112467
Q ss_pred cceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEe-eecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeecc
Q 039124 149 PLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPL-ATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEG 227 (259)
Q Consensus 149 PlGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l-~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~ 227 (259)
|.++++++++|+|||++...+|++++++ ++.+.+ .....+.+...+++++++++|++|++++.......++. ....
T Consensus 73 ~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~--~~~~ 149 (314)
T 1pjx_A 73 PAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT--RSMQ 149 (314)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCC--BTTS
T ss_pred CceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccc--cccc
Confidence 9999999833899999988899999999 666666 54444556678999999999999999975421111111 1123
Q ss_pred CCCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 228 ESTGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 228 ~~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
.+.++|+++|++ ++.+.+...+..|||+++
T Consensus 150 ~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~ 179 (314)
T 1pjx_A 150 EKFGSIYCFTTD-GQMIQVDTAFQFPNGIAV 179 (314)
T ss_dssp SSCEEEEEECTT-SCEEEEEEEESSEEEEEE
T ss_pred CCCCeEEEECCC-CCEEEeccCCCCcceEEE
Confidence 456899999998 888888788888898876
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.3e-14 Score=127.25 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=105.9
Q ss_pred CCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 77 DEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 77 ~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
..+..|++++||+ ++.+||++..+++|+|++.++...+.+. ......|.||++|
T Consensus 70 ~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-------------------------~~~~~~p~glavd 124 (349)
T 3v64_C 70 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-------------------------STGLESPGGLAVD 124 (349)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-------------------------CSSCSCCCEEEEE
T ss_pred cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE-------------------------eCCCCCccEEEEe
Confidence 4578899999996 7788899999999999999876322210 1224579999999
Q ss_pred CCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcC-CCcEEEecCCCCCCcccceeeeeccCCCceE
Q 039124 156 KDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHK-NGSIFFTDTSKRYNRVDHFFILLEGESTGRL 233 (259)
Q Consensus 156 ~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL 233 (259)
..+|+||++|...+ |.+++.+|...+.+.. ..+..|+++++|+ +|.|||||... .++|
T Consensus 125 ~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~----~~l~~P~~iavdp~~g~ly~td~~~----------------~~~I 184 (349)
T 3v64_C 125 WVHDKLYWTDSGTSRIEVANLDGAHRKVLLW----QSLEKPRAIALHPMEGTIYWTDWGN----------------TPRI 184 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEEC----TTCSCEEEEEEETTTTEEEEEECSS----------------SCEE
T ss_pred cCCCeEEEEcCCCCeEEEEcCCCCceEEEEe----CCCCCcceEEEecCcCeEEEeccCC----------------CCEE
Confidence 75689999998765 8888999876555553 2367899999997 67899999742 3689
Q ss_pred EEEeCCCCcEEEec-CCCCCcceeEE
Q 039124 234 LRYDPPTKSNSYCV-RWLGFSKWSTI 258 (259)
Q Consensus 234 ~rydp~tg~~~vl~-~~L~~pNGval 258 (259)
+|++++....++++ +++..||||++
T Consensus 185 ~r~~~dG~~~~~~~~~~~~~PnGla~ 210 (349)
T 3v64_C 185 EASSMDGSGRRIIADTHLFWPNGLTI 210 (349)
T ss_dssp EEEETTSCSCEESCCSSCSCEEEEEE
T ss_pred EEEeCCCCCcEEEEECCCCCcceEEE
Confidence 99999855555554 58999999986
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.6e-14 Score=128.12 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=105.9
Q ss_pred CCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 77 DEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 77 ~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
..+..|++++||+ ++.+||++..+++|+|++.++...+.+. ......|.||++|
T Consensus 113 ~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-------------------------~~~~~~p~glavd 167 (386)
T 3v65_B 113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-------------------------STGLESPGGLAVD 167 (386)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-------------------------CSSCSCCCCEEEE
T ss_pred cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-------------------------eCCCCCccEEEEE
Confidence 3578999999996 6788899999999999999876332210 1224579999999
Q ss_pred CCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcC-CCcEEEecCCCCCCcccceeeeeccCCCceE
Q 039124 156 KDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHK-NGSIFFTDTSKRYNRVDHFFILLEGESTGRL 233 (259)
Q Consensus 156 ~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL 233 (259)
..+|+||++|...+ |.++++++...+.++. ..+..|++|++|+ +|.|||||... .++|
T Consensus 168 ~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~----~~l~~P~giavdp~~g~ly~td~~~----------------~~~I 227 (386)
T 3v65_B 168 WVHDKLYWTDSGTSRIEVANLDGAHRKVLLW----QSLEKPRAIALHPMEGTIYWTDWGN----------------TPRI 227 (386)
T ss_dssp TTTTEEEEEETTTTEEEECBTTSCSCEEEEC----SSCSCEEEEEEETTTTEEEEEECSS----------------SCEE
T ss_pred eCCCeEEEEcCCCCeEEEEeCCCCceEEeec----CCCCCCcEEEEEcCCCeEEEeccCC----------------CCEE
Confidence 75689999999765 7888988876565553 2367899999997 67799999642 3689
Q ss_pred EEEeCCCCcEEEec-CCCCCcceeEE
Q 039124 234 LRYDPPTKSNSYCV-RWLGFSKWSTI 258 (259)
Q Consensus 234 ~rydp~tg~~~vl~-~~L~~pNGval 258 (259)
+|++++....++++ .++..||||++
T Consensus 228 ~r~~~dG~~~~~~~~~~~~~PnGlav 253 (386)
T 3v65_B 228 EASSMDGSGRRIIADTHLFWPNGLTI 253 (386)
T ss_dssp EEEETTSCSCEEEECSSCSCEEEEEE
T ss_pred EEEeCCCCCcEEEEECCCCCeeeEEE
Confidence 99999855555554 68999999997
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.3e-14 Score=128.77 Aligned_cols=160 Identities=15% Similarity=0.061 Sum_probs=111.4
Q ss_pred CeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 71 GKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
+|.+.. ++..|++++|+++|+ +|+...+|+|++++.++. +.++... ......+.|+
T Consensus 21 ~~~va~-~l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~G~--~~~~~~~--------------------v~~~g~~g~~ 76 (354)
T 3a9g_A 21 ISEVAS-DLEVPWSIAPLGGGR-YLVTERPGRLVLISPSGK--KLVASFD--------------------VANVGEAGLL 76 (354)
T ss_dssp EEEEEC-SCSCEEEEEEEETTE-EEEEETTTEEEEECSSCE--EEEEECC--------------------CCCSTTCSEE
T ss_pred EEEEeC-CCCCCeEEEEcCCCe-EEEEeCCCEEEEEeCCCc--eEeeccc--------------------eeecCCCcee
Confidence 355555 489999999999999 555556699999986553 3322100 0012246799
Q ss_pred eEEEeCC---CCcEEEEeCC--------CceEEEECCCC-----eEEEeeecCCCCCccccccEEEcCCCcEEEecCCCC
Q 039124 151 GLRFNKD---TGDLYIADAY--------YGLLVVGSKGG-----LATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKR 214 (259)
Q Consensus 151 Gl~~d~~---~G~L~VaD~~--------~Gl~~v~~~gg-----~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~ 214 (259)
||+++++ +|.|||++.. ..|++++.+++ ..+.+.+.......+++++|++++||.||||+....
T Consensus 77 gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~ 156 (354)
T 3a9g_A 77 GLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAA 156 (354)
T ss_dssp EEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTT
T ss_pred eEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCC
Confidence 9999985 5899999875 56889987765 234454444444567899999999999999976532
Q ss_pred CCcccceeeeeccCCCceEEEEeCCCC--------cEEEecCCCCCcceeEE
Q 039124 215 YNRVDHFFILLEGESTGRLLRYDPPTK--------SNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 215 ~~~~~~~~~~~e~~~~GrL~rydp~tg--------~~~vl~~~L~~pNGval 258 (259)
. ....++ .....|+++|+|++.. ..++++.++..|+|+++
T Consensus 157 ~--~~~~~d--~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~ 204 (354)
T 3a9g_A 157 D--PRLAQD--LSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDW 204 (354)
T ss_dssp C--GGGGTC--TTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEE
T ss_pred C--CccccC--CCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEE
Confidence 1 111111 1345799999999843 35888999999999987
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-13 Score=124.96 Aligned_cols=141 Identities=14% Similarity=0.129 Sum_probs=109.1
Q ss_pred eEEccCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 72 KLEFVDEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
+.+....+..|+++|+|. .|++||++..+++|.+++.++.....+ ......+|.
T Consensus 71 ~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l-------------------------~~~~~~~P~ 125 (318)
T 3sov_A 71 QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL-------------------------FWQELDQPR 125 (318)
T ss_dssp CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-------------------------ECSSCSSEE
T ss_pred EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEE-------------------------EeCCCCCcc
Confidence 345555688999999996 778888999999999999987622211 013356899
Q ss_pred eEEEeCCCCcEEEEeCC--CceEEEECCCCeEEEeeecCCCCCccccccEEEcC-CCcEEEecCCCCCCcccceeeeecc
Q 039124 151 GLRFNKDTGDLYIADAY--YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHK-NGSIFFTDTSKRYNRVDHFFILLEG 227 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~--~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTDss~~~~~~~~~~~~~e~ 227 (259)
||++|+.+|.||++|.. ..|++++.+|...+.++.. .+..||+|++|+ +|+|||+|+..
T Consensus 126 giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~----~l~~Pnglavd~~~~~lY~aD~~~-------------- 187 (318)
T 3sov_A 126 AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS----EIYWPNGLTLDYEEQKLYWADAKL-------------- 187 (318)
T ss_dssp EEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS----SCSCEEEEEEETTTTEEEEEETTT--------------
T ss_pred EEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC----CCCCccEEEEeccCCEEEEEECCC--------------
Confidence 99999756899999964 4599999998766666532 377899999997 67899999753
Q ss_pred CCCceEEEEeCCCCcEEEecC-CCCCcceeEE
Q 039124 228 ESTGRLLRYDPPTKSNSYCVR-WLGFSKWSTI 258 (259)
Q Consensus 228 ~~~GrL~rydp~tg~~~vl~~-~L~~pNGval 258 (259)
++|+++|.+.+..+++++ .+..|+|+++
T Consensus 188 ---~~I~~~d~dG~~~~~~~~~~~~~P~glav 216 (318)
T 3sov_A 188 ---NFIHKSNLDGTNRQAVVKGSLPHPFALTL 216 (318)
T ss_dssp ---TEEEEEETTSCSCEEEECSCCSCEEEEEE
T ss_pred ---CEEEEEcCCCCceEEEecCCCCCceEEEE
Confidence 589999998656666665 7899999985
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=135.15 Aligned_cols=140 Identities=20% Similarity=0.132 Sum_probs=111.9
Q ss_pred EccCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceE
Q 039124 74 EFVDEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGL 152 (259)
Q Consensus 74 l~~~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl 152 (259)
+...++..|.++++|+ ++.+||++..+++|+|++.++...+.+ . ....+.|.||
T Consensus 31 ~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v-----------~--------------~~g~~~P~Gl 85 (628)
T 4a0p_A 31 IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHV-----------V--------------EFGLDYPEGM 85 (628)
T ss_dssp CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-----------E--------------CSSCSCCCEE
T ss_pred EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEE-----------E--------------eCCCCCcceE
Confidence 3445688999999998 678888999999999999887533221 1 1224679999
Q ss_pred EEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcC-CCcEEEecCCCCCCcccceeeeeccCCC
Q 039124 153 RFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHK-NGSIFFTDTSKRYNRVDHFFILLEGEST 230 (259)
Q Consensus 153 ~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTDss~~~~~~~~~~~~~e~~~~ 230 (259)
++|..+++||++|...+ |.+++++|+..+.++. ..+..|++|++|| +|.|||||... .
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~----~~l~~P~~iavdp~~G~lY~tD~g~----------------~ 145 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW----KDLDSPRALALDPAEGFMYWTEWGG----------------K 145 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC----SSCCCEEEEEEETTTTEEEEEECSS----------------S
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe----CCCCCcccEEEccCCCeEEEeCCCC----------------C
Confidence 99976789999999876 7888999876666653 2467899999997 78999999642 4
Q ss_pred ceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 231 GRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 231 GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
++++|.+++..+.+++++++..||||++
T Consensus 146 ~~I~r~~~dG~~~~~l~~~~~~P~Glal 173 (628)
T 4a0p_A 146 PKIDRAAMDGSERTTLVPNVGRANGLTI 173 (628)
T ss_dssp CEEEEEETTSCSCEEEECSCSSEEEEEE
T ss_pred CEEEEEeCCCCceEEEECCCCCcceEEE
Confidence 6999999997778888899999999986
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-13 Score=121.08 Aligned_cols=141 Identities=15% Similarity=0.146 Sum_probs=107.1
Q ss_pred eEEccCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 72 KLEFVDEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
+.+....+..|+++|+|. .+++||++..+++|.+++.++.....+. .....+|.
T Consensus 69 ~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-------------------------~~~~~~P~ 123 (316)
T 1ijq_A 69 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-------------------------RENGSKPR 123 (316)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE-------------------------ECTTCCEE
T ss_pred EEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEE-------------------------ECCCCCcc
Confidence 445555688999999996 6778888899999999998876322211 12356899
Q ss_pred eEEEeCCCCcEEEEeCCC--ceEEEECCCCeEEEeeecCCCCCccccccEEEcC-CCcEEEecCCCCCCcccceeeeecc
Q 039124 151 GLRFNKDTGDLYIADAYY--GLLVVGSKGGLATPLATQAGGKPILFANDLDVHK-NGSIFFTDTSKRYNRVDHFFILLEG 227 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~--Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTDss~~~~~~~~~~~~~e~ 227 (259)
|+++|+.+|.||++|... .|++++++|...+.++.. .+..||+|++|+ +++|||+|+..
T Consensus 124 ~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~----~~~~P~gla~d~~~~~lY~~D~~~-------------- 185 (316)
T 1ijq_A 124 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE----NIQWPNGITLDLLSGRLYWVDSKL-------------- 185 (316)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS----SCSCEEEEEEETTTTEEEEEETTT--------------
T ss_pred eEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEEC----CCCCceEEEEeccCCEEEEEECCC--------------
Confidence 999997668999999864 499999998766656532 477999999996 56799999753
Q ss_pred CCCceEEEEeCCCCcEEEecC---CCCCcceeEE
Q 039124 228 ESTGRLLRYDPPTKSNSYCVR---WLGFSKWSTI 258 (259)
Q Consensus 228 ~~~GrL~rydp~tg~~~vl~~---~L~~pNGval 258 (259)
++|.++|.+.+..+++++ .+..|.||++
T Consensus 186 ---~~I~~~d~dg~~~~~~~~~~~~~~~P~giav 216 (316)
T 1ijq_A 186 ---HSISSIDVNGGNRKTILEDEKRLAHPFSLAV 216 (316)
T ss_dssp ---TEEEEEETTSCSCEEEEECTTTTSSEEEEEE
T ss_pred ---CeEEEEecCCCceEEEeecCCccCCcEEEEE
Confidence 489999988655666653 4788989875
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-13 Score=117.02 Aligned_cols=136 Identities=15% Similarity=0.122 Sum_probs=101.8
Q ss_pred CCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 79 VFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 79 l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
...|+++++|+ ++.+||++..+++|++++.++.....+ . ......|.||+++++
T Consensus 35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~-----------~--------------~~~~~~p~~ia~d~~ 89 (267)
T 1npe_A 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI-----------I--------------RQDLGSPEGIALDHL 89 (267)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE-----------E--------------CTTCCCEEEEEEETT
T ss_pred CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEE-----------E--------------ECCCCCccEEEEEec
Confidence 46899999998 567788888899999999887522111 0 112457999999985
Q ss_pred CCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcC-CCcEEEecCCCCCCcccceeeeeccCCCceEEE
Q 039124 158 TGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHK-NGSIFFTDTSKRYNRVDHFFILLEGESTGRLLR 235 (259)
Q Consensus 158 ~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~r 235 (259)
+++|||+|...+ |.+++.++...+.+... .+..|+++++|+ +|+||++|... .+++|++
T Consensus 90 ~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~----~~~~P~~i~vd~~~g~lyv~~~~~---------------~~~~I~~ 150 (267)
T 1npe_A 90 GRTIFWTDSQLDRIEVAKMDGTQRRVLFDT----GLVNPRGIVTDPVRGNLYWTDWNR---------------DNPKIET 150 (267)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECS----SCSSEEEEEEETTTTEEEEEECCS---------------SSCEEEE
T ss_pred CCeEEEEECCCCEEEEEEcCCCCEEEEEEC----CCCCccEEEEeeCCCEEEEEECCC---------------CCcEEEE
Confidence 589999998765 88889987655555431 356899999999 57899999641 2468999
Q ss_pred EeCCCCcEEEec-CCCCCcceeEE
Q 039124 236 YDPPTKSNSYCV-RWLGFSKWSTI 258 (259)
Q Consensus 236 ydp~tg~~~vl~-~~L~~pNGval 258 (259)
++++....+++. .++..|||+++
T Consensus 151 ~~~dg~~~~~~~~~~~~~P~gia~ 174 (267)
T 1npe_A 151 SHMDGTNRRILAQDNLGLPNGLTF 174 (267)
T ss_dssp EETTSCCCEEEECTTCSCEEEEEE
T ss_pred EecCCCCcEEEEECCCCCCcEEEE
Confidence 998754445554 67889999986
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-13 Score=122.18 Aligned_cols=147 Identities=14% Similarity=0.090 Sum_probs=114.1
Q ss_pred CCeEEccCCCCCceeEEEcCC-CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCC
Q 039124 70 TGKLEFVDEVFGPESLEFDGL-GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGR 148 (259)
Q Consensus 70 ~~e~l~~~~l~gPE~ia~D~~-G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gr 148 (259)
++|.+......-+|+++|+++ +.++|++..+++|+++++++.....+ . ....
T Consensus 39 ~~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~------------------------~---~~~~ 91 (326)
T 2ghs_A 39 AGRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVH------------------------A---LPFM 91 (326)
T ss_dssp CCEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE------------------------E---CSSC
T ss_pred ceEEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE------------------------E---CCCc
Confidence 578888877888999999995 67889999999999999877532211 1 1235
Q ss_pred cceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccC
Q 039124 149 PLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGE 228 (259)
Q Consensus 149 PlGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~ 228 (259)
|.+++++++ |++||+. ..||+++++++++.+.+.....+.+...+|++++|++|++|++++... +..
T Consensus 92 v~~i~~~~d-g~l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-----------~~~ 158 (326)
T 2ghs_A 92 GSALAKISD-SKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK-----------AET 158 (326)
T ss_dssp EEEEEEEET-TEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT-----------CCT
T ss_pred ceEEEEeCC-CeEEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCc-----------CCC
Confidence 789999994 9999987 568999999988877665433345567899999999999999986421 124
Q ss_pred CCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 229 STGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 229 ~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
..++||+|| +++.+.+..++..+||+++
T Consensus 159 ~~~~l~~~~--~g~~~~~~~~~~~~~~i~~ 186 (326)
T 2ghs_A 159 GAGSIYHVA--KGKVTKLFADISIPNSICF 186 (326)
T ss_dssp TCEEEEEEE--TTEEEEEEEEESSEEEEEE
T ss_pred CceEEEEEe--CCcEEEeeCCCcccCCeEE
Confidence 568999999 4888888788888999876
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-13 Score=124.41 Aligned_cols=159 Identities=13% Similarity=0.044 Sum_probs=109.8
Q ss_pred eEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcce
Q 039124 72 KLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLG 151 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlG 151 (259)
|.+.. .+..|++++++++|+ +|++...|+|++++ ++. ...++... ......+.|+|
T Consensus 24 ~~va~-~l~~P~~ia~~pdG~-l~V~e~~g~I~~i~-~g~-~~~~~~~~--------------------v~~~g~~~p~g 79 (352)
T 2ism_A 24 EEVVG-GLEVPWALAFLPDGG-MLIAERPGRIRLFR-EGR-LSTYAELS--------------------VYHRGESGLLG 79 (352)
T ss_dssp EEEEC-CCSCEEEEEECTTSC-EEEEETTTEEEEEE-TTE-EEEEEECC--------------------CCCSTTCSEEE
T ss_pred EEEEC-CCCCceEEEEcCCCe-EEEEeCCCeEEEEE-CCC-ccEeecce--------------------EeecCCCCcee
Confidence 44544 488999999999999 55555669999998 443 33322100 01123467999
Q ss_pred EEEeCC---CCcEEEEeCC------CceEEEECCCCe---EEEeeecCC--CCCccccccEEEcCCCcEEEecCCCCCCc
Q 039124 152 LRFNKD---TGDLYIADAY------YGLLVVGSKGGL---ATPLATQAG--GKPILFANDLDVHKNGSIFFTDTSKRYNR 217 (259)
Q Consensus 152 l~~d~~---~G~L~VaD~~------~Gl~~v~~~gg~---~~~l~~~~~--g~pl~~~Ndl~vd~dG~IyfTDss~~~~~ 217 (259)
|+++++ ++.|||++.. ..|++++.+++. .+.+.+... ....+.+++|++++||.||+|+......
T Consensus 80 ia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~- 158 (352)
T 2ism_A 80 LALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYER- 158 (352)
T ss_dssp EEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCG-
T ss_pred EEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCC-
Confidence 999985 5899999875 458899877542 344544343 3356789999999999999998653211
Q ss_pred ccceeeeeccCCCceEEEEeCCC-------------CcEEEecCCCCCcceeEE
Q 039124 218 VDHFFILLEGESTGRLLRYDPPT-------------KSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 218 ~~~~~~~~e~~~~GrL~rydp~t-------------g~~~vl~~~L~~pNGval 258 (259)
...++ .....|+++|+|++. ...++++.++..|+|+++
T Consensus 159 -~~~~d--~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~ 209 (352)
T 2ism_A 159 -ELAQD--LASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAW 209 (352)
T ss_dssp -GGGGC--TTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEE
T ss_pred -ccccC--CCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEE
Confidence 11111 134569999999984 256788889999999986
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.52 E-value=6e-13 Score=121.18 Aligned_cols=140 Identities=16% Similarity=0.140 Sum_probs=108.2
Q ss_pred eEEccCCCCCceeEEEcC-CCCEEEEEcCC-CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 72 KLEFVDEVFGPESLEFDG-LGRGPYTGLAD-GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~-~G~~~yt~~~~-G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
+.+....+..|.++++|+ +|.+||++..+ ++|+|++.++...+.+ .......|
T Consensus 151 ~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-------------------------~~~~~~~P 205 (349)
T 3v64_C 151 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII-------------------------ADTHLFWP 205 (349)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES-------------------------CCSSCSCE
T ss_pred EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE-------------------------EECCCCCc
Confidence 445556789999999998 67788888887 9999999887632210 01235679
Q ss_pred ceEEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccC
Q 039124 150 LGLRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGE 228 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~ 228 (259)
.||++|++++.||++|+..+ |.+++.+|+..+.++.. .+..|++++++ +|.||+||..
T Consensus 206 nGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~----~~~~P~giav~-~~~ly~td~~---------------- 264 (349)
T 3v64_C 206 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ----GLPHPFAITVF-EDSLYWTDWH---------------- 264 (349)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----SCSSEEEEEEE-TTEEEEEETT----------------
T ss_pred ceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeC----CCCCceEEEEE-CCEEEEecCC----------------
Confidence 99999975689999999876 88999998765655532 26789999994 6799999975
Q ss_pred CCceEEEEeCCCC-cEEEecCCCCCcceeEE
Q 039124 229 STGRLLRYDPPTK-SNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 229 ~~GrL~rydp~tg-~~~vl~~~L~~pNGval 258 (259)
+++|.++|+.+| ..+++..++..|.||++
T Consensus 265 -~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 265 -TKSINSANKFTGKNQEIIRNKLHFPMDIHT 294 (349)
T ss_dssp -TTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred -CCeEEEEEccCCCccEEeccCCCCCceEEE
Confidence 358999996555 46677789999999986
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=9.7e-13 Score=117.89 Aligned_cols=142 Identities=18% Similarity=0.181 Sum_probs=108.6
Q ss_pred eEEccCCCCCceeEEEcC-CCCEEEEEcCC-CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 72 KLEFVDEVFGPESLEFDG-LGRGPYTGLAD-GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~-~G~~~yt~~~~-G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
+.+....+..|.++++|+ .|.+||++... ++|++++.++.....+. ......|
T Consensus 112 ~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~-------------------------~~~~~~P 166 (316)
T 1ijq_A 112 KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-------------------------TENIQWP 166 (316)
T ss_dssp EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE-------------------------CSSCSCE
T ss_pred EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE-------------------------ECCCCCc
Confidence 345555688999999997 66777787765 89999999876322210 1235679
Q ss_pred ceEEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccC
Q 039124 150 LGLRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGE 228 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~ 228 (259)
.||++|++++.||++|+..+ |.+++.+|+..+.++.. +..+..|.+++++ +|++|+||..
T Consensus 167 ~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~--~~~~~~P~giav~-~~~ly~~d~~---------------- 227 (316)
T 1ijq_A 167 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--EKRLAHPFSLAVF-EDKVFWTDII---------------- 227 (316)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC--TTTTSSEEEEEEE-TTEEEEEETT----------------
T ss_pred eEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec--CCccCCcEEEEEE-CCEEEEEECC----------------
Confidence 99999976689999999875 88999998776766643 1236689999997 5899999964
Q ss_pred CCceEEEEeCCCCc-EEEecCCCCCcceeEE
Q 039124 229 STGRLLRYDPPTKS-NSYCVRWLGFSKWSTI 258 (259)
Q Consensus 229 ~~GrL~rydp~tg~-~~vl~~~L~~pNGval 258 (259)
+++|.++|+.+|+ .+++..++..|.||++
T Consensus 228 -~~~V~~~~~~~g~~~~~i~~~~~~p~~i~v 257 (316)
T 1ijq_A 228 -NEAIFSANRLTGSDVNLLAENLLSPEDMVL 257 (316)
T ss_dssp -TTEEEEEETTTCCCCEEEECSCSCCCCEEE
T ss_pred -CCeEEEEeCCCCcceEEEecCCCCceEEEE
Confidence 3599999997665 6777888999999875
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5.1e-13 Score=117.91 Aligned_cols=144 Identities=15% Similarity=0.230 Sum_probs=109.4
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.+....||+++||++|++++++..++.|++++.++.....+. ......|.+++++
T Consensus 41 ~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~-------------------------~~~~~~~~~i~~~ 95 (333)
T 2dg1_A 41 SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-------------------------VSHKANPAAIKIH 95 (333)
T ss_dssp ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-------------------------ECSSSSEEEEEEC
T ss_pred eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe-------------------------eCCCCCcceEEEC
Confidence 345678999999999997778999999999998765333211 0123568999999
Q ss_pred CCCCcEEEEeCCC-----ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCC
Q 039124 156 KDTGDLYIADAYY-----GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGEST 230 (259)
Q Consensus 156 ~~~G~L~VaD~~~-----Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~ 230 (259)
++ |+|||++... +|++++++++..+.+.... .+...+++++++++|++|++++... .....
T Consensus 96 ~d-g~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~-----------~~~~~ 161 (333)
T 2dg1_A 96 KD-GRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL--STAYCIDDMVFDSKGGFYFTDFRGY-----------STNPL 161 (333)
T ss_dssp TT-SCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS--SSCCCEEEEEECTTSCEEEEECCCB-----------TTBCC
T ss_pred CC-CcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC--ccCCcccceEECCCCCEEEEecccc-----------ccCCC
Confidence 94 9999998765 7999999988766443321 1345799999999999999987421 12456
Q ss_pred ceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 231 GRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 231 GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
++|+++|+++++.+.+..++..+||+++
T Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 189 (333)
T 2dg1_A 162 GGVYYVSPDFRTVTPIIQNISVANGIAL 189 (333)
T ss_dssp EEEEEECTTSCCEEEEEEEESSEEEEEE
T ss_pred ceEEEEeCCCCEEEEeecCCCcccceEE
Confidence 8999999988888877777777888875
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.51 E-value=5e-13 Score=118.48 Aligned_cols=129 Identities=19% Similarity=0.111 Sum_probs=99.5
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
..||+++||++|++|+++..+++|+++++++. ...+ + ...++|.||+++++ |
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~-----------------------~---~~~~~p~gia~~~d-G 83 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIH-----------------------A---TVEGKVSGLAFTSN-G 83 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEE-----------------------E---ECSSEEEEEEECTT-S
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEE-----------------------E---eCCCCceeEEEcCC-C
Confidence 68999999999998888889999999998875 2221 0 12457999999994 9
Q ss_pred cEEEEeCCC-c--eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEE
Q 039124 160 DLYIADAYY-G--LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRY 236 (259)
Q Consensus 160 ~L~VaD~~~-G--l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ry 236 (259)
+|||||... + |++++..+|+.+.++... ...++|++++.+++++|++|+. .|+||++
T Consensus 84 ~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~---~~~~~~g~~~~~~~~~~v~d~~-----------------~g~i~~~ 143 (306)
T 2p4o_A 84 DLVATGWNADSIPVVSLVKSDGTVETLLTLP---DAIFLNGITPLSDTQYLTADSY-----------------RGAIWLI 143 (306)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCEEEEEECT---TCSCEEEEEESSSSEEEEEETT-----------------TTEEEEE
T ss_pred cEEEEeccCCcceEEEEcCCCCeEEEEEeCC---CccccCcccccCCCcEEEEECC-----------------CCeEEEE
Confidence 999999653 3 889998888777666532 2467899999888899999863 4689999
Q ss_pred eCCCCcEEEe-----------cCCCCCccee
Q 039124 237 DPPTKSNSYC-----------VRWLGFSKWS 256 (259)
Q Consensus 237 dp~tg~~~vl-----------~~~L~~pNGv 256 (259)
|+.+++.++. ..++..||||
T Consensus 144 d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi 174 (306)
T 2p4o_A 144 DVVQPSGSIWLEHPMLARSNSESVFPAANGL 174 (306)
T ss_dssp ETTTTEEEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred eCCCCcEeEEEECCccccccccCCCCcCCCc
Confidence 9986543332 3567889987
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.50 E-value=8.1e-13 Score=122.61 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=104.1
Q ss_pred cCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCcc----EEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 76 VDEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVG----WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 76 ~~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~----~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
...+..|.+++||+ ++.+||++..+++|+|++.++.. ... + .......|.
T Consensus 108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~-----------~--------------~~~~~~~p~ 162 (400)
T 3p5b_L 108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-----------V--------------ISRDIQAPD 162 (400)
T ss_dssp ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEE-----------E--------------ECSSCSCEE
T ss_pred ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceE-----------E--------------EeCCCCCcc
Confidence 34588999999997 67888999999999999987631 111 0 112356799
Q ss_pred eEEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcC-CCcEEEecCCCCCCcccceeeeeccC
Q 039124 151 GLRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHK-NGSIFFTDTSKRYNRVDHFFILLEGE 228 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTDss~~~~~~~~~~~~~e~~ 228 (259)
||++|..+++||++|...+ |.+++++|+..+.++.. .+..|++|++|+ +|.|||||...
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~----~~~~P~~iavdp~~g~ly~td~~~--------------- 223 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWGT--------------- 223 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC----SSCCEEEEEEETTTTEEEEEECSS---------------
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC----CCCCcceEEEecccCeEEEEeCCC---------------
Confidence 9999975689999999876 78889998876666642 366799999998 67899999642
Q ss_pred CCceEEEEeCCCCcEEEe-cCCCCCcceeEE
Q 039124 229 STGRLLRYDPPTKSNSYC-VRWLGFSKWSTI 258 (259)
Q Consensus 229 ~~GrL~rydp~tg~~~vl-~~~L~~pNGval 258 (259)
.++|++++++....+++ ..++..||||++
T Consensus 224 -~~~I~~~~~dG~~~~~~~~~~l~~P~glav 253 (400)
T 3p5b_L 224 -PAKIKKGGLNGVDIYSLVTENIQWPNGITL 253 (400)
T ss_dssp -SCCEEEEETTSCSCEEEECSSCSCEEEEEE
T ss_pred -CCEEEEEeCCCCccEEEEECCCCceEEEEE
Confidence 25899999985454544 467999999986
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=9.6e-13 Score=113.80 Aligned_cols=141 Identities=16% Similarity=0.127 Sum_probs=103.2
Q ss_pred eEEccCCCCCceeEEEcCC-CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 72 KLEFVDEVFGPESLEFDGL-GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~-G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
+.+....+..|+++++|++ +++|+++..+++|.+++.++.....+ . .....+|.
T Consensus 71 ~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~-----------~--------------~~~~~~P~ 125 (267)
T 1npe_A 71 TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL-----------F--------------DTGLVNPR 125 (267)
T ss_dssp EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-----------E--------------CSSCSSEE
T ss_pred EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE-----------E--------------ECCCCCcc
Confidence 4444456789999999985 66777888889999999876521111 0 11235799
Q ss_pred eEEEeCCCCcEEEEeCC--C-ceEEEECCCCeEEEeeecCCCCCccccccEEEcCC-CcEEEecCCCCCCcccceeeeec
Q 039124 151 GLRFNKDTGDLYIADAY--Y-GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKN-GSIFFTDTSKRYNRVDHFFILLE 226 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~--~-Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~d-G~IyfTDss~~~~~~~~~~~~~e 226 (259)
|+++|+++|.||++|.. . .|++++.++...+.+.. ..+..||+++++++ ++||++|+..
T Consensus 126 ~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~----~~~~~P~gia~d~~~~~lyv~d~~~------------- 188 (267)
T 1npe_A 126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ----DNLGLPNGLTFDAFSSQLCWVDAGT------------- 188 (267)
T ss_dssp EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC----TTCSCEEEEEEETTTTEEEEEETTT-------------
T ss_pred EEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEE----CCCCCCcEEEEcCCCCEEEEEECCC-------------
Confidence 99999855899999976 2 48889988765555543 24678999999996 5699999753
Q ss_pred cCCCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 227 GESTGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 227 ~~~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
++|+++|+++++.+.+++++..|.||++
T Consensus 189 ----~~I~~~~~~g~~~~~~~~~~~~P~gi~~ 216 (267)
T 1npe_A 189 ----HRAECLNPAQPGRRKVLEGLQYPFAVTS 216 (267)
T ss_dssp ----TEEEEEETTEEEEEEEEECCCSEEEEEE
T ss_pred ----CEEEEEecCCCceEEEecCCCCceEEEE
Confidence 4788888876566666677778888764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-12 Score=121.28 Aligned_cols=142 Identities=15% Similarity=0.135 Sum_probs=107.3
Q ss_pred CeEEccCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 71 GKLEFVDEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
.+.+....+..|+++|+|. .+++||++..+++|.+++.++.....+. ......|
T Consensus 150 ~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~-------------------------~~~~~~P 204 (400)
T 3p5b_L 150 YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-------------------------RENGSKP 204 (400)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE-------------------------ECSSCCE
T ss_pred ceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE-------------------------eCCCCCc
Confidence 3555565789999999997 7788889999999999999876322210 1234579
Q ss_pred ceEEEeCCCCcEEEEeCCC--ceEEEECCCCeEEEeeecCCCCCccccccEEEcC-CCcEEEecCCCCCCcccceeeeec
Q 039124 150 LGLRFNKDTGDLYIADAYY--GLLVVGSKGGLATPLATQAGGKPILFANDLDVHK-NGSIFFTDTSKRYNRVDHFFILLE 226 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~--Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTDss~~~~~~~~~~~~~e 226 (259)
.||++|+.+|.||++|... .|.+++.+|...+.++.. .+..||+|++|+ +++|||+|+..
T Consensus 205 ~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~----~l~~P~glavd~~~~~lY~aD~~~------------- 267 (400)
T 3p5b_L 205 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE----NIQWPNGITLDLLSGRLYWVDSKL------------- 267 (400)
T ss_dssp EEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS----SCSCEEEEEEETTTTEEEEEETTT-------------
T ss_pred ceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC----CCCceEEEEEEeCCCEEEEEECCC-------------
Confidence 9999998668999999753 599999998766666542 467899999995 57799999753
Q ss_pred cCCCceEEEEeCCCCcEEEecC---CCCCcceeEE
Q 039124 227 GESTGRLLRYDPPTKSNSYCVR---WLGFSKWSTI 258 (259)
Q Consensus 227 ~~~~GrL~rydp~tg~~~vl~~---~L~~pNGval 258 (259)
.+|+++|.+.+..++++. .+..|.||++
T Consensus 268 ----~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v 298 (400)
T 3p5b_L 268 ----HSISSIDVNGGNRKTILEDEKRLAHPFSLAV 298 (400)
T ss_dssp ----TEEEEEETTSCCCEEEEECSSTTSSEEEEEE
T ss_pred ----CEEEEEeCCCCccEEEEeCCCCCCCCEEEEE
Confidence 378888887555555554 3677878764
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-12 Score=120.55 Aligned_cols=140 Identities=17% Similarity=0.140 Sum_probs=107.4
Q ss_pred eEEccCCCCCceeEEEcC-CCCEEEEEcCC-CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 72 KLEFVDEVFGPESLEFDG-LGRGPYTGLAD-GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~-~G~~~yt~~~~-G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
+.+....+..|.++++|+ .|.+||++..+ ++|+|++.++.....+. ......|
T Consensus 194 ~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-------------------------~~~~~~P 248 (386)
T 3v65_B 194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA-------------------------DTHLFWP 248 (386)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-------------------------CSSCSCE
T ss_pred EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE-------------------------ECCCCCe
Confidence 455566789999999997 56777888777 99999999876322210 1224579
Q ss_pred ceEEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccC
Q 039124 150 LGLRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGE 228 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~ 228 (259)
.||++|+++++||++|+..+ |.+++.+++..+.++.. .+..|++|++ .+|.||+||..
T Consensus 249 nGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~----~~~~P~giav-~~~~ly~td~~---------------- 307 (386)
T 3v65_B 249 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ----GLPHPFAITV-FEDSLYWTDWH---------------- 307 (386)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECS----SCSSEEEEEE-ETTEEEEEETT----------------
T ss_pred eeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEEC----CCCCceEEEE-ECCEEEEeeCC----------------
Confidence 99999965689999999876 88999987765655532 2668999999 46789999964
Q ss_pred CCceEEEEeCCCC-cEEEecCCCCCcceeEE
Q 039124 229 STGRLLRYDPPTK-SNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 229 ~~GrL~rydp~tg-~~~vl~~~L~~pNGval 258 (259)
+++|.++|+.+| ..+++..++..|.||++
T Consensus 308 -~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 308 -TKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp -TTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred -CCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 358999995444 56778889999999986
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-12 Score=115.80 Aligned_cols=140 Identities=18% Similarity=0.101 Sum_probs=107.9
Q ss_pred eEEccCCCCCceeEEEcC-CCCEEEEEcC-CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 72 KLEFVDEVFGPESLEFDG-LGRGPYTGLA-DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~-~G~~~yt~~~-~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
+.+....+..|.++++|+ .|.+||++.. .++|+|++.++.....+ . ......|
T Consensus 114 ~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-----------~--------------~~~l~~P 168 (318)
T 3sov_A 114 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII-----------I--------------NSEIYWP 168 (318)
T ss_dssp EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEE-----------E--------------CSSCSCE
T ss_pred EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEE-----------E--------------ECCCCCc
Confidence 445556789999999998 5677777754 68999999987632221 0 1225679
Q ss_pred ceEEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccC
Q 039124 150 LGLRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGE 228 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~ 228 (259)
+||++|+++++||++|+..+ |.+++.+|+..+.++. ..+..|++++++ ++.+|+||..
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~----~~~~~P~glav~-~~~lywtd~~---------------- 227 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK----GSLPHPFALTLF-EDILYWTDWS---------------- 227 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----SCCSCEEEEEEE-TTEEEEEETT----------------
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec----CCCCCceEEEEe-CCEEEEEecC----------------
Confidence 99999976689999999876 8899999877676663 236789999998 5689999964
Q ss_pred CCceEEEEeCCCCc-EEEecCCCCCcceeEE
Q 039124 229 STGRLLRYDPPTKS-NSYCVRWLGFSKWSTI 258 (259)
Q Consensus 229 ~~GrL~rydp~tg~-~~vl~~~L~~pNGval 258 (259)
+++|+++|+.+|+ .+++..++..|.||++
T Consensus 228 -~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v 257 (318)
T 3sov_A 228 -THSILACNKYTGEGLREIHSDIFSPMDIHA 257 (318)
T ss_dssp -TTEEEEEETTTCCSCEEEECCCSSCCCEEE
T ss_pred -CCeEEEEECCCCCceEEEeCCCCCCcEEEE
Confidence 3599999997665 5677788999999886
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-12 Score=113.89 Aligned_cols=137 Identities=16% Similarity=0.243 Sum_probs=97.1
Q ss_pred EccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc--cEEEEEEeecCccccccccCccccccccccccCcCCCcce
Q 039124 74 EFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENV--GWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLG 151 (259)
Q Consensus 74 l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~--~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlG 151 (259)
+..+.+..|.++++|++|++|+++..+++|.+++.++. ....+.. .. . . + ........|.|
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~--~~--~--~--g---------~~~~~~~~P~~ 147 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGR--SM--Q--P--G---------SDQNHFCQPTD 147 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESB--TT--B--C--C---------CSTTCCSSEEE
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecc--cC--C--C--C---------CCccccCCCcE
Confidence 33466789999999999998888888999999998775 1222210 00 0 0 0 01234567999
Q ss_pred EEEeCCCCcEEEEeCC-C-ceEEEECCCCeEEEeeecCCC-----CCccccccEEEcCC-CcEEEecCCCCCCcccceee
Q 039124 152 LRFNKDTGDLYIADAY-Y-GLLVVGSKGGLATPLATQAGG-----KPILFANDLDVHKN-GSIFFTDTSKRYNRVDHFFI 223 (259)
Q Consensus 152 l~~d~~~G~L~VaD~~-~-Gl~~v~~~gg~~~~l~~~~~g-----~pl~~~Ndl~vd~d-G~IyfTDss~~~~~~~~~~~ 223 (259)
|++++++|+|||+|.+ . .|.++++++.....+.....+ ..+..|++++++++ |+||++|+..
T Consensus 148 ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~---------- 217 (329)
T 3fvz_A 148 VAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN---------- 217 (329)
T ss_dssp EEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT----------
T ss_pred EEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC----------
Confidence 9999845999999963 4 588999887765555433222 35778999999998 8999999753
Q ss_pred eeccCCCceEEEEeCCCCcEE
Q 039124 224 LLEGESTGRLLRYDPPTKSNS 244 (259)
Q Consensus 224 ~~e~~~~GrL~rydp~tg~~~ 244 (259)
++|.+||+++|+..
T Consensus 218 -------~~I~~~~~~~G~~~ 231 (329)
T 3fvz_A 218 -------GRIQCFKTDTKEFV 231 (329)
T ss_dssp -------TEEEEEETTTCCEE
T ss_pred -------CEEEEEECCCCcEE
Confidence 47778887766544
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-12 Score=125.51 Aligned_cols=137 Identities=15% Similarity=0.170 Sum_probs=105.8
Q ss_pred CCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 77 DEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 77 ~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.++..|-++++|+ +|++||++...++|+|++.++...+++. ....++|.||++|
T Consensus 346 ~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~-------------------------~~~~~~p~GlAvD 400 (619)
T 3s94_A 346 EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV-------------------------TAQIAHPDGIAVD 400 (619)
T ss_dssp SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-------------------------CSSCSCCCEEEEE
T ss_pred cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE-------------------------ECCCCCcCceEEe
Confidence 4577899999998 6788889999999999999875333221 1235789999999
Q ss_pred CCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCC-CcEEEecCCCCCCcccceeeeeccCCCceE
Q 039124 156 KDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKN-GSIFFTDTSKRYNRVDHFFILLEGESTGRL 233 (259)
Q Consensus 156 ~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~d-G~IyfTDss~~~~~~~~~~~~~e~~~~GrL 233 (259)
..+++||++|...+ |.+++.+|+..+++..+ .+..|++|++|+. |.+||||... .+++
T Consensus 401 ~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~----~l~~P~~iavdp~~G~ly~tD~g~----------------~~~I 460 (619)
T 3s94_A 401 WVARNLYWTDTGTDRIEVTRLNGTMRKILISE----DLEEPRAIVLDPMVGYMYWTDWGE----------------IPKI 460 (619)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEECT----TCCSEEEEEEETTTTEEEEEECSS----------------SCEE
T ss_pred cccCcEEEEeCCCCcEEEEeCCCCeEEEEEEC----CCCCeeeEEEEcCCCcEEEecCCC----------------CCEE
Confidence 65689999999876 67778888766666532 4778999999985 9999999752 3589
Q ss_pred EEEeCCCCcEEEec-CCCCCcceeEE
Q 039124 234 LRYDPPTKSNSYCV-RWLGFSKWSTI 258 (259)
Q Consensus 234 ~rydp~tg~~~vl~-~~L~~pNGval 258 (259)
+|.+.+....+++. ++|..||||++
T Consensus 461 ~r~~~dG~~~~~l~~~~l~~P~Glal 486 (619)
T 3s94_A 461 ERAALDGSDRVVLVNTSLGWPNGLAL 486 (619)
T ss_dssp EEEETTSCSCEEEECSSCSCEEEEEE
T ss_pred EEEccCCCccEEEEeCCCCCCeeeEE
Confidence 99998744444454 46999999986
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-12 Score=126.71 Aligned_cols=140 Identities=15% Similarity=0.102 Sum_probs=104.3
Q ss_pred EccCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccE-EEEEEeecCccccccccCccccccccccccCcCCCcce
Q 039124 74 EFVDEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGW-ETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLG 151 (259)
Q Consensus 74 l~~~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~-~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlG 151 (259)
+...++..|.++++|. ++.+||++..+++|.|++.++... +. +. ......|.|
T Consensus 34 ~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~-----------v~--------------~~~~~~P~G 88 (619)
T 3s94_A 34 IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN-----------VV--------------VSGLLSPDG 88 (619)
T ss_dssp --CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE-----------EE--------------CSSCSCEEE
T ss_pred EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE-----------EE--------------eCCCCCcCe
Confidence 4455688999999997 677888999999999999876521 11 00 122467999
Q ss_pred EEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCC-CcEEEecCCCCCCcccceeeeeccCC
Q 039124 152 LRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKN-GSIFFTDTSKRYNRVDHFFILLEGES 229 (259)
Q Consensus 152 l~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~d-G~IyfTDss~~~~~~~~~~~~~e~~~ 229 (259)
|++|..+++||++|...+ |.+++.+|+..+.++. ..+..|++|++|+. |.|||||...
T Consensus 89 lAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~----~~l~~P~~Iavdp~~g~ly~tD~g~---------------- 148 (619)
T 3s94_A 89 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW----QELDQPRAIALDPSSGFMYWTDWGE---------------- 148 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----SSCSCCCCEEEETTTTEEEEEECSS----------------
T ss_pred EEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEe----CCCCCCceEEEecCCCeEEEeccCC----------------
Confidence 999986689999998876 7778999876666653 34678999999985 7899999642
Q ss_pred CceEEEEeCCCCcEEEec-CCCCCcceeEE
Q 039124 230 TGRLLRYDPPTKSNSYCV-RWLGFSKWSTI 258 (259)
Q Consensus 230 ~GrL~rydp~tg~~~vl~-~~L~~pNGval 258 (259)
.++++|.+++....++++ +++..||||++
T Consensus 149 ~~~I~r~~~dG~~~~~l~~~~~~~P~Glal 178 (619)
T 3s94_A 149 VPKIERAGMDGSSRFIIINSEIYWPNGLTL 178 (619)
T ss_dssp SCEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred CCEEEEEECCCCceEEEEeCCCCCCcEEEE
Confidence 368999999844455554 68999999986
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.6e-12 Score=116.17 Aligned_cols=142 Identities=11% Similarity=0.036 Sum_probs=102.6
Q ss_pred CCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc-eEEEe
Q 039124 78 EVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL-GLRFN 155 (259)
Q Consensus 78 ~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl-Gl~~d 155 (259)
....|.++++|+ +|. +|+...+++|++++.++.....++... ........|. ||+++
T Consensus 217 ~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~~~~~--------------------~~g~~~~~P~~~ia~~ 275 (409)
T 3hrp_A 217 FSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEVTLIKQLE--------------------LSGSLGTNPGPYLIYY 275 (409)
T ss_dssp SCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCEEEEEECC--------------------CCSCCCCSSCCEEEEE
T ss_pred hcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCEEEEeccc--------------------ccCCCCCCccccEEEe
Confidence 467899999999 555 666667899999999866433332110 0011123477 99999
Q ss_pred CCCCcEEEEeCCCc-eEEEECCCCeEEEeeecC--CC--------CCccccccEEEcCCCcEEEecC-CCCCCcccceee
Q 039124 156 KDTGDLYIADAYYG-LLVVGSKGGLATPLATQA--GG--------KPILFANDLDVHKNGSIFFTDT-SKRYNRVDHFFI 223 (259)
Q Consensus 156 ~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~--~g--------~pl~~~Ndl~vd~dG~IyfTDs-s~~~~~~~~~~~ 223 (259)
+++|.|||+|...+ |+++++++. ...++... .| ..+..|++++++++|+||++|+ ..
T Consensus 276 p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~---------- 344 (409)
T 3hrp_A 276 FVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKG---------- 344 (409)
T ss_dssp TTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTT----------
T ss_pred CCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCC----------
Confidence 95589999998876 889998876 45554321 11 2378899999999999999997 53
Q ss_pred eeccCCCceEEEEeCCCCcEEEecCC---------------CCCcceeEE
Q 039124 224 LLEGESTGRLLRYDPPTKSNSYCVRW---------------LGFSKWSTI 258 (259)
Q Consensus 224 ~~e~~~~GrL~rydp~tg~~~vl~~~---------------L~~pNGval 258 (259)
+||.++|+.+|+++.++.. +..|+||++
T Consensus 345 -------~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giav 387 (409)
T 3hrp_A 345 -------YCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICY 387 (409)
T ss_dssp -------CEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEE
T ss_pred -------CEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEE
Confidence 4899999666888777643 778999986
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.9e-12 Score=112.37 Aligned_cols=139 Identities=12% Similarity=0.132 Sum_probs=96.8
Q ss_pred CCCCceeEEEcCCCCEEEEEcCC------------------------CeEEEEeCCCccEEEEEEeecCccccccccCcc
Q 039124 78 EVFGPESLEFDGLGRGPYTGLAD------------------------GRIVRWMGENVGWETFAIVTSNWSEKLCARGVD 133 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~~~------------------------G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~ 133 (259)
++..|.++++|++|++|.++..+ ++|++++.+.......
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~----------------- 84 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS----------------- 84 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-----------------
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-----------------
Confidence 46789999999999977666666 4689998864422210
Q ss_pred ccccccccccCcCCCcceEEEeCCCCcEEEEeCCCc-eEEEECCCC--eEEEeeec----CCCCCccccccEEEcC-CCc
Q 039124 134 STTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYG-LLVVGSKGG--LATPLATQ----AGGKPILFANDLDVHK-NGS 205 (259)
Q Consensus 134 ~~~~~~~~~~~~~grPlGl~~d~~~G~L~VaD~~~G-l~~v~~~gg--~~~~l~~~----~~g~pl~~~Ndl~vd~-dG~ 205 (259)
........|.|+++++ +|+|||+|...+ |+++++++. .+..+... .....+..|+++++++ +|+
T Consensus 85 -------~~~~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~ 156 (329)
T 3fvz_A 85 -------SGKNLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA 156 (329)
T ss_dssp -------ECTTTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC
T ss_pred -------cCCCccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe
Confidence 0012356799999999 599999998765 889998876 33434321 1123577899999999 899
Q ss_pred EEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEE-Eec----------CCCCCcceeEE
Q 039124 206 IFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNS-YCV----------RWLGFSKWSTI 258 (259)
Q Consensus 206 IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~-vl~----------~~L~~pNGval 258 (259)
||++|+. ..++|.+||++ |+.. .+. ..+..|+||++
T Consensus 157 lyv~d~~----------------~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~ 203 (329)
T 3fvz_A 157 VFVSDGY----------------CNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLAL 203 (329)
T ss_dssp EEEEECS----------------SCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEE
T ss_pred EEEEeCC----------------CCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEE
Confidence 9999962 12478888865 4433 332 24667888876
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.7e-12 Score=125.39 Aligned_cols=140 Identities=15% Similarity=0.136 Sum_probs=102.2
Q ss_pred eEEccCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 72 KLEFVDEVFGPESLEFDGLG-RGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~G-~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
+.+....+..|++||+|..+ ++||++..+++|.+++.++....++. ......|.
T Consensus 463 ~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~-------------------------~~~l~~P~ 517 (791)
T 3m0c_C 463 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-------------------------RENGSKPR 517 (791)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE-------------------------ECTTCCEE
T ss_pred eEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEE-------------------------eCCCCCcc
Confidence 55555578999999999754 78889999999999999886432221 12245699
Q ss_pred eEEEeCCCCcEEEEeCCC--ceEEEECCCCeEEEeeecCCCCCccccccEEEc-CCCcEEEecCCCCCCcccceeeeecc
Q 039124 151 GLRFNKDTGDLYIADAYY--GLLVVGSKGGLATPLATQAGGKPILFANDLDVH-KNGSIFFTDTSKRYNRVDHFFILLEG 227 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~--Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd-~dG~IyfTDss~~~~~~~~~~~~~e~ 227 (259)
||++|+..|.||++|... .|.+++.+|...+.++. ..+..||+|++| .+|+|||+|+..
T Consensus 518 gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~----~~l~~P~GLavD~~~~~LYwaD~~~-------------- 579 (791)
T 3m0c_C 518 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT----ENIQWPNGITLDLLSGRLYWVDSKL-------------- 579 (791)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC----SSCSCEEEEEEETTTTEEEEEETTT--------------
T ss_pred eEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe----CCCCCceEEEEecCCCeEEEEeCCC--------------
Confidence 999998669999999765 48999999887666664 246789999999 567899999753
Q ss_pred CCCceEEEEeCCCCcEEEecCC---CCCcceeE
Q 039124 228 ESTGRLLRYDPPTKSNSYCVRW---LGFSKWST 257 (259)
Q Consensus 228 ~~~GrL~rydp~tg~~~vl~~~---L~~pNGva 257 (259)
.+|.++|.+....++++.. +..|.||+
T Consensus 580 ---~~I~~~d~dG~~~~~v~~~~~~l~~P~gla 609 (791)
T 3m0c_C 580 ---HSISSIDVNGGNRKTILEDEKRLAHPFSLA 609 (791)
T ss_dssp ---TEEEEEETTSCSCEEEEECTTTTSSEEEEE
T ss_pred ---CcEEEEecCCCceEEEecCCCccCCCCEEE
Confidence 3667777664444444432 44555554
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-11 Score=105.88 Aligned_cols=141 Identities=13% Similarity=0.152 Sum_probs=98.4
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.+++..|.++++|++|++|+++..+++|.+++.++.....+... + ........|.+++++
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~-----------~---------~~~~~~~~p~~i~~~ 85 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGEC-----------G---------KRDSQLLYPNRVAVV 85 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCB-----------S---------SSTTCBSSEEEEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEeccc-----------C---------CCcccccCceEEEEE
Confidence 45688999999999999777788899999999886522222100 0 001224579999995
Q ss_pred -CCCCcEEEEeC--CCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCce
Q 039124 156 -KDTGDLYIADA--YYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGR 232 (259)
Q Consensus 156 -~~~G~L~VaD~--~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~Gr 232 (259)
+ +|+|||++. ...|.++++++...+.+. ...+..|++++++++|++|++|+.. ++
T Consensus 86 ~~-~g~l~v~~~~~~~~i~~~d~~g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~~-----------------~~ 143 (286)
T 1q7f_A 86 RN-SGDIIVTERSPTHQIQIYNQYGQFVRKFG----ATILQHPRGVTVDNKGRIIVVECKV-----------------MR 143 (286)
T ss_dssp TT-TTEEEEEECGGGCEEEEECTTSCEEEEEC----TTTCSCEEEEEECTTSCEEEEETTT-----------------TE
T ss_pred cC-CCeEEEEcCCCCCEEEEECCCCcEEEEec----CccCCCceEEEEeCCCCEEEEECCC-----------------CE
Confidence 6 599999996 456899997766444332 2245689999999999999998642 47
Q ss_pred EEEEeCCCCcEEEec--CCCCCcceeEE
Q 039124 233 LLRYDPPTKSNSYCV--RWLGFSKWSTI 258 (259)
Q Consensus 233 L~rydp~tg~~~vl~--~~L~~pNGval 258 (259)
|++||++.+....+. ..+..|++|++
T Consensus 144 i~~~~~~g~~~~~~~~~~~~~~p~~i~~ 171 (286)
T 1q7f_A 144 VIIFDQNGNVLHKFGCSKHLEFPNGVVV 171 (286)
T ss_dssp EEEECTTSCEEEEEECTTTCSSEEEEEE
T ss_pred EEEEcCCCCEEEEeCCCCccCCcEEEEE
Confidence 888887643333332 35667777765
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-11 Score=121.96 Aligned_cols=141 Identities=14% Similarity=-0.000 Sum_probs=108.7
Q ss_pred CeEEccCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 71 GKLEFVDEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
.+.+....+..|+++|+|. .+++||++...++|.+++.++.....+ . ......|
T Consensus 71 ~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l-----------~--------------~~~l~~P 125 (628)
T 4a0p_A 71 LEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL-----------V--------------WKDLDSP 125 (628)
T ss_dssp CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEE-----------E--------------CSSCCCE
T ss_pred cEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEE-----------E--------------eCCCCCc
Confidence 3556666678999999996 577888999999999999987632221 0 1234679
Q ss_pred ceEEEeCCCCcEEEEeCC--CceEEEECCCCeEEEeeecCCCCCccccccEEEcCC-CcEEEecCCCCCCcccceeeeec
Q 039124 150 LGLRFNKDTGDLYIADAY--YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKN-GSIFFTDTSKRYNRVDHFFILLE 226 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~--~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~d-G~IyfTDss~~~~~~~~~~~~~e 226 (259)
.||++|+..|.||++|.. ..|.+++.+|...+.+++ .+..||+|++|++ ++||++|+..
T Consensus 126 ~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-----~~~~P~GlalD~~~~~LY~aD~~~------------- 187 (628)
T 4a0p_A 126 RALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-----NVGRANGLTIDYAKRRLYWTDLDT------------- 187 (628)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-----SCSSEEEEEEETTTTEEEEEETTT-------------
T ss_pred ccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-----CCCCcceEEEccccCEEEEEECCC-------------
Confidence 999999766999999965 359999999887777763 3678999999985 6799999753
Q ss_pred cCCCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 227 GESTGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 227 ~~~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
++|.++|.+.+..+++.+.+..|-||++
T Consensus 188 ----~~I~~~d~dG~~~~v~~~~l~~P~glav 215 (628)
T 4a0p_A 188 ----NLIESSNMLGLNREVIADDLPHPFGLTQ 215 (628)
T ss_dssp ----TEEEEEETTSCSCEEEEECCSCEEEEEE
T ss_pred ----CEEEEEcCCCCceEEeeccCCCceEEEE
Confidence 4788888776556677777888888775
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-11 Score=122.03 Aligned_cols=142 Identities=17% Similarity=0.187 Sum_probs=109.1
Q ss_pred eEEccCCCCCceeEEEcCC-CCEEEEEcCC-CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 72 KLEFVDEVFGPESLEFDGL-GRGPYTGLAD-GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~-G~~~yt~~~~-G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
+.+....+..|.+||+|+. |.+|||+..+ ++|.+++.++.....+. ......|
T Consensus 506 ~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv-------------------------~~~l~~P 560 (791)
T 3m0c_C 506 KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-------------------------TENIQWP 560 (791)
T ss_dssp EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE-------------------------CSSCSCE
T ss_pred EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE-------------------------eCCCCCc
Confidence 3455567889999999984 7788888765 89999999886332211 1234679
Q ss_pred ceEEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccC
Q 039124 150 LGLRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGE 228 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~ 228 (259)
.||++|..+++||++|+..+ |.+++.+|...+.++.. +..+..|.+|+++. ++|||||..+
T Consensus 561 ~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~--~~~l~~P~glav~~-~~lYwtD~~~--------------- 622 (791)
T 3m0c_C 561 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--EKRLAHPFSLAVFE-DKVFWTDIIN--------------- 622 (791)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC--TTTTSSEEEEEEET-TEEEEEETTT---------------
T ss_pred eEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC--CCccCCCCEEEEeC-CEEEEEECCC---------------
Confidence 99999965799999999876 88999998877777643 22456788999864 5899999753
Q ss_pred CCceEEEEeCCCC-cEEEecCCCCCcceeEE
Q 039124 229 STGRLLRYDPPTK-SNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 229 ~~GrL~rydp~tg-~~~vl~~~L~~pNGval 258 (259)
++|+++|..+| .++++..++..|.||++
T Consensus 623 --~~I~~~dk~tG~~~~~l~~~l~~P~~i~v 651 (791)
T 3m0c_C 623 --EAIFSANRLTGSDVNLLAENLLSPEDMVL 651 (791)
T ss_dssp --TEEEEEETTTCCCCEEEECSCSCCCCEEE
T ss_pred --CEEEEEeCCCCcceEEeecCCCCceeEee
Confidence 58999998777 46777889999999986
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.5e-11 Score=110.27 Aligned_cols=166 Identities=10% Similarity=-0.051 Sum_probs=111.3
Q ss_pred CCCeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCC
Q 039124 69 VTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGR 148 (259)
Q Consensus 69 ~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gr 148 (259)
.+++.+..+ +..|.+++++++|+++++....|+|++++.++.....+... + + . .....+.
T Consensus 22 ~~~~~va~g-L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~-~---~--------------v-~~~g~~G 81 (347)
T 3das_A 22 KVLRTVATG-LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEV-P---G--------------V-SPSGEGG 81 (347)
T ss_dssp EEEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC-T---T--------------C-CCBTTBS
T ss_pred ceeEEeecC-CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeeccc-C---c--------------e-eecCCCC
Confidence 355666655 99999999999999666666699999998765432222110 0 0 0 1123456
Q ss_pred cceEEEeCC---CCcEEEEeCC---CceEEEECCCC--------eEEEeeecCCCCCccccccEEEcCCCcEEEecCCCC
Q 039124 149 PLGLRFNKD---TGDLYIADAY---YGLLVVGSKGG--------LATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKR 214 (259)
Q Consensus 149 PlGl~~d~~---~G~L~VaD~~---~Gl~~v~~~gg--------~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~ 214 (259)
|+||+++++ +|.|||+.+. ..|.++..+++ ..+++.........++.++|++++||.||||.....
T Consensus 82 llGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~ 161 (347)
T 3das_A 82 LLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESG 161 (347)
T ss_dssp EEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTT
T ss_pred ceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCC
Confidence 999999973 5899998642 35888866542 235555544444567889999999999999954321
Q ss_pred CCcccceeeeeccCCCceEEEEeCCCC--------cEEEecCCCCCcceeEE
Q 039124 215 YNRVDHFFILLEGESTGRLLRYDPPTK--------SNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 215 ~~~~~~~~~~~e~~~~GrL~rydp~tg--------~~~vl~~~L~~pNGval 258 (259)
.. ...++ .....|+++|++++.. ..++...++.-|+|+++
T Consensus 162 ~~--~~~qd--~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~ 209 (347)
T 3das_A 162 DT--GLSQD--RKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAW 209 (347)
T ss_dssp CG--GGTTC--TTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEE
T ss_pred CC--ccccC--CCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEE
Confidence 10 00000 1245799999999844 45788899999999987
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-11 Score=112.71 Aligned_cols=149 Identities=12% Similarity=0.010 Sum_probs=96.5
Q ss_pred ccCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEE
Q 039124 75 FVDEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLR 153 (259)
Q Consensus 75 ~~~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~ 153 (259)
+...-..||+++||+ +|.+|+.++.+|+|.++++++...+.+.+ +. +- ..-...-+|.||.
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~--~~----~s------------~~g~~~~~~sGl~ 69 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVI--DG----AS------------SNGDGEQQMSGLS 69 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECC--TT----TC------------CSSCCSEEEEEEE
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEec--CC----cc------------ccCCCcceeeEEE
Confidence 344557899999998 55655566789999999998553332211 00 00 0000112478999
Q ss_pred E---eCCCCcEEE-EeC-------------CCceEEEECC---CCeEEEeee--c-CC------CCCccccccEEEcCCC
Q 039124 154 F---NKDTGDLYI-ADA-------------YYGLLVVGSK---GGLATPLAT--Q-AG------GKPILFANDLDVHKNG 204 (259)
Q Consensus 154 ~---d~~~G~L~V-aD~-------------~~Gl~~v~~~---gg~~~~l~~--~-~~------g~pl~~~Ndl~vd~dG 204 (259)
+ |++ |+|+| +|. ...|+++|+. +++....+. . .+ |.....+||+++|++|
T Consensus 70 ~~~~D~~-grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G 148 (334)
T 2p9w_A 70 LLTHDNS-KRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG 148 (334)
T ss_dssp ESSSSSC-CEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS
T ss_pred EeccCCC-CcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC
Confidence 9 785 99998 563 3459999988 565443333 1 11 2244569999999999
Q ss_pred cEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEEe------cCCCCCcceeEE
Q 039124 205 SIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYC------VRWLGFSKWSTI 258 (259)
Q Consensus 205 ~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl------~~~L~~pNGval 258 (259)
++|+||+.. .+.++|++|+.+.+... ......+|||++
T Consensus 149 naYVt~s~~----------------~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~ 192 (334)
T 2p9w_A 149 NSYVAFALG----------------MPAIARVSADGKTVSTFAWESGNGGQRPGYSGITF 192 (334)
T ss_dssp CEEEEEEES----------------SCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEE
T ss_pred CEEEeCCCC----------------CCeEEEEeCCCCEEeeeeecCCCcccccCcceEEE
Confidence 999999742 15799999985444443 223455779986
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-11 Score=115.49 Aligned_cols=130 Identities=19% Similarity=0.156 Sum_probs=92.5
Q ss_pred CCCCceeEEEcCC---CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 78 EVFGPESLEFDGL---GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 78 ~l~gPE~ia~D~~---G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
++..|++++||++ |++|+++.. ++|.++++++....++ .....+|.||++
T Consensus 137 ~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~--------------------------~~~~~~P~giav 189 (433)
T 4hw6_A 137 AFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIK--------------------------TTNIGQCADVNF 189 (433)
T ss_dssp CCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEE--------------------------CCCCSCEEEEEE
T ss_pred ccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEe--------------------------ecCCCCccEEEE
Confidence 6889999999984 776666666 8999999865533321 123567999999
Q ss_pred eCCCCcEEEEeCC-----CceEEEECCCCeE--EEeeecCCCCCccccccEEEcC-CCcEEEecCCCCCCcccceeeeec
Q 039124 155 NKDTGDLYIADAY-----YGLLVVGSKGGLA--TPLATQAGGKPILFANDLDVHK-NGSIFFTDTSKRYNRVDHFFILLE 226 (259)
Q Consensus 155 d~~~G~L~VaD~~-----~Gl~~v~~~gg~~--~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTDss~~~~~~~~~~~~~e 226 (259)
+++ |+|||+|.. .+++.++.+++.. ..+. .+..|+++++++ +|+|||+|..
T Consensus 190 d~d-G~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~------~~~~P~giavd~~~G~lyv~d~~-------------- 248 (433)
T 4hw6_A 190 TLN-GDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC------NARGAKTCAVHPQNGKIYYTRYH-------------- 248 (433)
T ss_dssp CTT-CCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE------ECSSBCCCEECTTTCCEEECBTT--------------
T ss_pred CCC-CCEEEEcCCCCcccceEEEEECCCCeecccccc------ccCCCCEEEEeCCCCeEEEEECC--------------
Confidence 995 889999974 3578887765532 1221 367899999999 8999999964
Q ss_pred cCCCceEEEEeCCCCcE-EEecC--CCCCcceeEE
Q 039124 227 GESTGRLLRYDPPTKSN-SYCVR--WLGFSKWSTI 258 (259)
Q Consensus 227 ~~~~GrL~rydp~tg~~-~vl~~--~L~~pNGval 258 (259)
+++|++||++++++ +.+.. ....++||++
T Consensus 249 ---~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~ 280 (433)
T 4hw6_A 249 ---HAMISSYDPATGTLTEEEVMMDTKGSNFHIVW 280 (433)
T ss_dssp ---CSEEEEECTTTCCEEEEEEECSCCSSCEEEEE
T ss_pred ---CCEEEEEECCCCeEEEEEeccCCCCCcccEEE
Confidence 35888899887776 33321 2233445654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.2e-11 Score=102.04 Aligned_cols=131 Identities=17% Similarity=0.261 Sum_probs=89.8
Q ss_pred CceeEEEcCCCCEEE-EEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 81 GPESLEFDGLGRGPY-TGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 81 gPE~ia~D~~G~~~y-t~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
.|+++++|++|++|+ ++..+++|.+++.++.....+ .......|.+|++++ +|
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-------------------------~~~~~~~p~~i~~~~-~g 78 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------------------------PFNGLYQPQGLAVDG-AG 78 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-------------------------CCCSCCSCCCEEECT-TC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-------------------------eeCCcCCcceeEECC-CC
Confidence 999999999999655 447789999998765421110 012235799999999 49
Q ss_pred cEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCC
Q 039124 160 DLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPP 239 (259)
Q Consensus 160 ~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~ 239 (259)
+|||++...+|++++++++....+. ...+..|++++++++|++|++|.. .++|+++|..
T Consensus 79 ~l~v~~~~~~i~~~d~~~~~~~~~~----~~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~ 137 (270)
T 1rwi_B 79 TVYVTDFNNRVVTLAAGSNNQTVLP----FDGLNYPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAG 137 (270)
T ss_dssp CEEEEETTTEEEEECTTCSCCEECC----CCSCSSEEEEEECTTCCEEEEEGG-----------------GTEEEEECTT
T ss_pred CEEEEcCCCEEEEEeCCCceEeeee----cCCcCCCcceEECCCCCEEEEECC-----------------CCEEEEEECC
Confidence 9999998556999999887544332 123567999999999999999864 2467777765
Q ss_pred CCcEEE-ecCCCCCcceeEE
Q 039124 240 TKSNSY-CVRWLGFSKWSTI 258 (259)
Q Consensus 240 tg~~~v-l~~~L~~pNGval 258 (259)
+..... ...++..|+||++
T Consensus 138 ~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 138 SKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp CCSCEECCCCSCCSCCCEEE
T ss_pred CceeEeeccccCCCceeEEE
Confidence 443332 2244556777664
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3.3e-12 Score=126.76 Aligned_cols=141 Identities=14% Similarity=0.109 Sum_probs=100.2
Q ss_pred CCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 77 DEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 77 ~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
..+..|++++||+ ++.+||++..+++|++++.++..... .. + ........+|.||++|
T Consensus 403 ~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~------~~-~--------------~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 403 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS------SY-D--------------TVISRDIQAPDGLAVD 461 (699)
T ss_dssp CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-C------CC-C--------------CBCCSCC--CCCEECC
T ss_pred ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCc------ce-E--------------EEEeCCCCCcceEEEE
Confidence 4578899999997 56778888899999999987620000 00 0 0111234679999999
Q ss_pred CCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcC-CCcEEEecCCCCCCcccceeeeeccCCCceE
Q 039124 156 KDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHK-NGSIFFTDTSKRYNRVDHFFILLEGESTGRL 233 (259)
Q Consensus 156 ~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL 233 (259)
..+|+||++|...+ |.+++++++..+.++.. .+..|++|++|+ .|.|||||... .++|
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~----~~~~P~giavDp~~g~ly~td~~~----------------~~~I 521 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----QGSKPRAIVVDPVHGFMYWTDWGT----------------PAKI 521 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCCEEEECCC----SSCCCCCEECCSSSSCCEECCCSS----------------SCCE
T ss_pred eeCCcEEEEeccCCeEEEEecCCCceEEEEeC----CCCCcceEEEccCCCcEEEcccCC----------------CCeE
Confidence 54689999998765 88899998766665432 356799999998 57899999642 2588
Q ss_pred EEEeCCCCcEEEec-CCCCCcceeEE
Q 039124 234 LRYDPPTKSNSYCV-RWLGFSKWSTI 258 (259)
Q Consensus 234 ~rydp~tg~~~vl~-~~L~~pNGval 258 (259)
++++++....++++ .++.+||||+|
T Consensus 522 ~~~~~dG~~~~~l~~~~l~~PnGlav 547 (699)
T 1n7d_A 522 KKGGLNGVDIYSLVTENIQWPNGITL 547 (699)
T ss_dssp EBCCSSSCCCCEESCSSCSSCCCEEE
T ss_pred EEEeCCCCCeeEEEeCCCCCccEEEE
Confidence 88888744444444 67899999986
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=9.5e-11 Score=101.18 Aligned_cols=109 Identities=17% Similarity=0.243 Sum_probs=81.2
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.+....|.++++|++|++|+++..+++|++++.++.....+. .......|.+|+++
T Consensus 117 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~------------------------~~~~~~~p~~i~~~ 172 (286)
T 1q7f_A 117 ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFG------------------------CSKHLEFPNGVVVN 172 (286)
T ss_dssp TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEE------------------------CTTTCSSEEEEEEC
T ss_pred CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeC------------------------CCCccCCcEEEEEC
Confidence 345678999999999997777778899999998765222210 01224569999999
Q ss_pred CCCCcEEEEeCCC-ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 156 KDTGDLYIADAYY-GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 156 ~~~G~L~VaD~~~-Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
+ +|++||+|... .|.++++++.....+.. .| .+..|++++++++|++|+++..
T Consensus 173 ~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~--~g-~~~~p~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 173 D-KQEIFISDNRAHCVKVFNYEGQYLRQIGG--EG-ITNYPIGVGINSNGEILIADNH 226 (286)
T ss_dssp S-SSEEEEEEGGGTEEEEEETTCCEEEEESC--TT-TSCSEEEEEECTTCCEEEEECS
T ss_pred C-CCCEEEEECCCCEEEEEcCCCCEEEEEcc--CC-ccCCCcEEEECCCCCEEEEeCC
Confidence 9 49999999754 58999998765444432 22 2568999999999999999965
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.31 E-value=8.1e-11 Score=100.25 Aligned_cols=135 Identities=14% Similarity=0.195 Sum_probs=95.7
Q ss_pred CCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 77 DEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 77 ~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
..+..|.++++|++|++|+++..+++|++++.+...... ........|.+|++++
T Consensus 105 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-------------------------~~~~~~~~p~~i~~~~ 159 (270)
T 1rwi_B 105 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-------------------------LPFTGLNDPDGVAVDN 159 (270)
T ss_dssp CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE-------------------------CCCCSCCSCCCEEECT
T ss_pred CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe-------------------------eccccCCCceeEEEeC
Confidence 446789999999999977777788999999754431110 0012235799999999
Q ss_pred CCCcEEEEeCCC-ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEE
Q 039124 157 DTGDLYIADAYY-GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLR 235 (259)
Q Consensus 157 ~~G~L~VaD~~~-Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~r 235 (259)
+|+|||+|... +|.+++++++...... . ..+..|++++++++|++|+++... ++|++
T Consensus 160 -~g~l~v~~~~~~~i~~~~~~~~~~~~~~--~--~~~~~p~~i~~d~~g~l~v~~~~~-----------------~~v~~ 217 (270)
T 1rwi_B 160 -SGNVYVTDTDNNRVVKLEAESNNQVVLP--F--TDITAPWGIAVDEAGTVYVTEHNT-----------------NQVVK 217 (270)
T ss_dssp -TCCEEEEEGGGTEEEEECTTTCCEEECC--C--SSCCSEEEEEECTTCCEEEEETTT-----------------SCEEE
T ss_pred -CCCEEEEECCCCEEEEEecCCCceEeec--c--cCCCCceEEEECCCCCEEEEECCC-----------------CcEEE
Confidence 48999999764 5999999887533221 1 234679999999999999999642 47888
Q ss_pred EeCCCCcEEEec-CCCCCcceeEE
Q 039124 236 YDPPTKSNSYCV-RWLGFSKWSTI 258 (259)
Q Consensus 236 ydp~tg~~~vl~-~~L~~pNGval 258 (259)
||++++...... .++..|.++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~p~~i~~ 241 (270)
T 1rwi_B 218 LLAGSTTSTVLPFTGLNTPLAVAV 241 (270)
T ss_dssp ECTTCSCCEECCCCSCSCEEEEEE
T ss_pred EcCCCCcceeeccCCCCCceeEEE
Confidence 888755544433 45666777764
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.6e-11 Score=105.30 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=89.5
Q ss_pred eEEccCCCCCceeEEEcCCCCEEEEEc--CCC--eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCC
Q 039124 72 KLEFVDEVFGPESLEFDGLGRGPYTGL--ADG--RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCG 147 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~G~~~yt~~--~~G--~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g 147 (259)
|.+.... ..|++++++++|+++++.. .+| +|++++ ++. ...| + ++.. .......
T Consensus 10 ~~v~~~~-~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~-~~~~--p--~~~~---------------~~~~~~~ 67 (343)
T 2qe8_A 10 EVVAELS-LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDG-LIPF--P--PQSG---------------NAIITFD 67 (343)
T ss_dssp EEEEEES-SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTE-EEES--C--CCCS---------------SCCCCCS
T ss_pred EEEEEcC-CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCC-eecC--C--Cccc---------------Cccccee
Confidence 4444433 6999999999999555532 234 899998 443 2222 1 1100 0112356
Q ss_pred CcceEEEeCCCCcEEEEeCC------CceEEEECCCCeE-EEeee-cCCCCCccccccEEEcC-CCcEEEecCCCCCCcc
Q 039124 148 RPLGLRFNKDTGDLYIADAY------YGLLVVGSKGGLA-TPLAT-QAGGKPILFANDLDVHK-NGSIFFTDTSKRYNRV 218 (259)
Q Consensus 148 rPlGl~~d~~~G~L~VaD~~------~Gl~~v~~~gg~~-~~l~~-~~~g~pl~~~Ndl~vd~-dG~IyfTDss~~~~~~ 218 (259)
.|.|+++|++ |+|||+|.. ..|+++|++++++ +.+.- ...+.+..++||+++++ +|.+|+||++..
T Consensus 68 ~p~gv~~d~~-g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~---- 142 (343)
T 2qe8_A 68 TVLGIKSDGN-GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD---- 142 (343)
T ss_dssp CEEEEEECSS-SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG----
T ss_pred EeeEEEEcCC-CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC----
Confidence 8999999995 999999975 4699999998863 33321 12234456899999996 578999998531
Q ss_pred cceeeeeccCCCceEEEEeCCCCcEEEec
Q 039124 219 DHFFILLEGESTGRLLRYDPPTKSNSYCV 247 (259)
Q Consensus 219 ~~~~~~~e~~~~GrL~rydp~tg~~~vl~ 247 (259)
..+.|+.||+.+++...++
T Consensus 143 ----------~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 143 ----------DKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp ----------GGCEEEEEETTTCCEEEEC
T ss_pred ----------CCCeEEEEECCCCCEEEEe
Confidence 1245666776666554443
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.30 E-value=5.4e-11 Score=112.45 Aligned_cols=170 Identities=15% Similarity=0.077 Sum_probs=109.0
Q ss_pred CeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 71 GKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
++.+.. .+..|.+++|+++|+++++....++|++++.++.....++.. . + . .......+.++
T Consensus 19 ~~~~a~-~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~-~---~-~------------~~~~~g~~Gll 80 (454)
T 1cru_A 19 KKVILS-NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQV-P---E-I------------VNDADGQNGLL 80 (454)
T ss_dssp EEEEEC-CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC-T---T-C------------CCCTTSSCSEE
T ss_pred EEEEEC-CCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecC-C---c-c------------ccccCCCCcee
Confidence 455555 499999999999999666666667899998754323332210 0 0 0 00001245689
Q ss_pred eEEEeCC---CCcEEEEeCC-------------CceEEEECCC--Ce---EEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 151 GLRFNKD---TGDLYIADAY-------------YGLLVVGSKG--GL---ATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 151 Gl~~d~~---~G~L~VaD~~-------------~Gl~~v~~~g--g~---~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
||+++++ +|.|||+++. ..|++++.+. +. .+++.+.......+++++|++++||+||+|
T Consensus 81 gia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~ 160 (454)
T 1cru_A 81 GFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYT 160 (454)
T ss_dssp EEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEE
T ss_pred EEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEE
Confidence 9999985 6999999863 3477776432 22 344554444445678999999999999998
Q ss_pred cCCCCCCcccce---------------eeeeccCCCceEEEEeCCCC-----------cEEEecCCCCCcceeEE
Q 039124 210 DTSKRYNRVDHF---------------FILLEGESTGRLLRYDPPTK-----------SNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 210 Dss~~~~~~~~~---------------~~~~e~~~~GrL~rydp~tg-----------~~~vl~~~L~~pNGval 258 (259)
............ ...-.....|+|+|+|++.. ..++...++.-|+|++|
T Consensus 161 ~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~ 235 (454)
T 1cru_A 161 IGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAF 235 (454)
T ss_dssp ECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEE
T ss_pred ECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEE
Confidence 543211100000 00001234799999999844 45788999999999987
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=122.79 Aligned_cols=139 Identities=15% Similarity=0.146 Sum_probs=99.5
Q ss_pred EccCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceE
Q 039124 74 EFVDEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGL 152 (259)
Q Consensus 74 l~~~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl 152 (259)
+....+..|+++|+|. .|++||++..+++|.+++.++.....+ .......|.||
T Consensus 447 ~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l-------------------------~~~~~~~P~gi 501 (699)
T 1n7d_A 447 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-------------------------FREQGSKPRAI 501 (699)
T ss_dssp BCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEE-------------------------CCCSSCCCCCE
T ss_pred EEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEE-------------------------EeCCCCCcceE
Confidence 3334577899999995 677788888899999999887632221 01224679999
Q ss_pred EEeCCCCcEEEEeCCC--ceEEEECCCCeEEEeeecCCCCCccccccEEEcCC-CcEEEecCCCCCCcccceeeeeccCC
Q 039124 153 RFNKDTGDLYIADAYY--GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKN-GSIFFTDTSKRYNRVDHFFILLEGES 229 (259)
Q Consensus 153 ~~d~~~G~L~VaD~~~--Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~d-G~IyfTDss~~~~~~~~~~~~~e~~~ 229 (259)
++|+.+|.||++|... .|.+++.++...+.++. ..+..||+|++|++ ++|||+|+..
T Consensus 502 avDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~----~~l~~PnGlavd~~~~~LY~aD~~~---------------- 561 (699)
T 1n7d_A 502 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT----ENIQWPNGITLDLLSGRLYWVDSKL---------------- 561 (699)
T ss_dssp ECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC----SSCSSCCCEEECTTTCCEEEEETTT----------------
T ss_pred EEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe----CCCCCccEEEEeccCCEEEEEecCC----------------
Confidence 9998668999999764 48888888765555543 24779999999975 6799999753
Q ss_pred CceEEEEeCCCCcEEEecC---CCCCcceeEE
Q 039124 230 TGRLLRYDPPTKSNSYCVR---WLGFSKWSTI 258 (259)
Q Consensus 230 ~GrL~rydp~tg~~~vl~~---~L~~pNGval 258 (259)
++|+++|+++...++++. .+..|.||++
T Consensus 562 -~~I~~~d~dG~~~~~~~~~~~~~~~P~glav 592 (699)
T 1n7d_A 562 -HSISSIDVNGGNRKTILEDEKRLAHPFSLAV 592 (699)
T ss_dssp -TEEEEECSSSSCCEEECCCSSSCSSCCCCEE
T ss_pred -CeEEEEccCCCceEEEEecCCcCCCceEeEE
Confidence 478888887555555553 3667777765
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.29 E-value=6e-11 Score=111.05 Aligned_cols=138 Identities=12% Similarity=0.066 Sum_probs=98.1
Q ss_pred CCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 78 EVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 78 ~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
.+..|+++++|+ +|.+|+++..+++|+++++++.....+. .....+.|.||++++
T Consensus 224 ~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~------------------------~~~~~~~P~gia~~p 279 (430)
T 3tc9_A 224 KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLF------------------------TIQDSGWEFHIQFHP 279 (430)
T ss_dssp ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEE------------------------ECSSSSCCEEEEECT
T ss_pred cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE------------------------EcCCCCcceeEEEcC
Confidence 368999999999 8898888999999999999876321211 011235799999999
Q ss_pred CCCc-EEEEeCCCc-eEEEECCC--Ce---EEEeeecC------CC----CCccccc-cEEE--------cCCCcEEEec
Q 039124 157 DTGD-LYIADAYYG-LLVVGSKG--GL---ATPLATQA------GG----KPILFAN-DLDV--------HKNGSIFFTD 210 (259)
Q Consensus 157 ~~G~-L~VaD~~~G-l~~v~~~g--g~---~~~l~~~~------~g----~pl~~~N-dl~v--------d~dG~IyfTD 210 (259)
+ |+ |||+|...+ |++++.++ +. ...++... +| ..+..|+ ++++ |++|+|||+|
T Consensus 280 d-G~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD 358 (430)
T 3tc9_A 280 S-GNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCD 358 (430)
T ss_dssp T-SSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEE
T ss_pred C-CCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEE
Confidence 5 87 999998776 78877654 32 23343321 11 2478899 8888 4679999999
Q ss_pred CCCCCCcccceeeeeccCCCceEEEEeCCCCcEEEec-----------CC-------CCCcceeEE
Q 039124 211 TSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCV-----------RW-------LGFSKWSTI 258 (259)
Q Consensus 211 ss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~-----------~~-------L~~pNGval 258 (259)
+.. .||.+++++ |+++.++ ++ |..|.||++
T Consensus 359 ~~n-----------------~~I~~i~~~-G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giav 406 (430)
T 3tc9_A 359 REN-----------------HCIRILTPQ-GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVY 406 (430)
T ss_dssp GGG-----------------TEEEEECTT-SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEE
T ss_pred CCC-----------------cEEEEECCC-CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEE
Confidence 753 378888875 6666665 22 668999886
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.1e-11 Score=111.50 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=95.7
Q ss_pred CCCCCceeEEEcC--CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 77 DEVFGPESLEFDG--LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 77 ~~l~gPE~ia~D~--~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
.++..|+++++|+ +|++|+++.. ++|.+++.++..+..+ .....+|.||++
T Consensus 134 ~~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~--------------------------~~~~~~P~~ia~ 186 (430)
T 3tc9_A 134 GGFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTV--------------------------YSGLSKVRTICW 186 (430)
T ss_dssp BCCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEE--------------------------ECCCSCEEEEEE
T ss_pred cCCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEE--------------------------ecCCCCcceEEE
Confidence 3688999999996 4675555555 8999999987633322 123567999999
Q ss_pred eCCCCc-EEEEeCCC-----ceEEEECCCCeE--EEeeecCCCCCccccccEEEcC-CCcEEEecCCCCCCcccceeeee
Q 039124 155 NKDTGD-LYIADAYY-----GLLVVGSKGGLA--TPLATQAGGKPILFANDLDVHK-NGSIFFTDTSKRYNRVDHFFILL 225 (259)
Q Consensus 155 d~~~G~-L~VaD~~~-----Gl~~v~~~gg~~--~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTDss~~~~~~~~~~~~~ 225 (259)
+++ |+ |||+|... .++.++.+++.. ..+. .+..|+++++++ +|+|||+|..
T Consensus 187 d~~-G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~------~~~~p~giavdp~~g~lyv~d~~------------- 246 (430)
T 3tc9_A 187 THE-ADSMIITNDQNNNDRPNNYILTRESGFKVITELT------KGQNCNGAETHPINGELYFNSWN------------- 246 (430)
T ss_dssp CTT-SSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE------ECSSCCCEEECTTTCCEEEEETT-------------
T ss_pred eCC-CCEEEEEeCCCCcccceEEEEeCCCceeeeeeec------cCCCceEEEEeCCCCEEEEEECC-------------
Confidence 995 77 99999743 367778776532 2232 367899999999 8999999974
Q ss_pred ccCCCceEEEEeCCCCcEEEe--cCCCCCcceeEE
Q 039124 226 EGESTGRLLRYDPPTKSNSYC--VRWLGFSKWSTI 258 (259)
Q Consensus 226 e~~~~GrL~rydp~tg~~~vl--~~~L~~pNGval 258 (259)
.++|++||+++++.+.+ ..+...|+||++
T Consensus 247 ----~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~ 277 (430)
T 3tc9_A 247 ----AGQVFRYDFTTQETTPLFTIQDSGWEFHIQF 277 (430)
T ss_dssp ----TTEEEEEETTTTEEEEEEECSSSSCCEEEEE
T ss_pred ----CCEEEEEECCCCcEEEEEEcCCCCcceeEEE
Confidence 35899999987766333 234568999886
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=9.9e-11 Score=103.90 Aligned_cols=133 Identities=10% Similarity=0.007 Sum_probs=92.4
Q ss_pred CCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC-C
Q 039124 80 FGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK-D 157 (259)
Q Consensus 80 ~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~-~ 157 (259)
..|.++++|+ +|+ +|++...+.|+++++++...+.++.. .......+|.++++++ +
T Consensus 80 ~~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~---------------------~~~~~~~~p~~i~~d~~~ 137 (322)
T 2fp8_A 80 GRTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATS---------------------VDGVPFKWLYAVTVDQRT 137 (322)
T ss_dssp CCEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESE---------------------ETTEECSCEEEEEECTTT
T ss_pred CCCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEeccc---------------------CCCCcccccceEEEecCC
Confidence 4699999997 777 55554556699999875433332110 0012245799999998 6
Q ss_pred CCcEEEEeCC------------------CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcc
Q 039124 158 TGDLYIADAY------------------YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRV 218 (259)
Q Consensus 158 ~G~L~VaD~~------------------~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~ 218 (259)
|+|||+|.. .+|+++++++++.+.+.. .+..||++++++||+ +|++|+..
T Consensus 138 -G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-----~~~~p~gia~~~dg~~lyv~d~~~----- 206 (322)
T 2fp8_A 138 -GIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-----ELHVPGGAEVSADSSFVLVAEFLS----- 206 (322)
T ss_dssp -CCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-----EESCCCEEEECTTSSEEEEEEGGG-----
T ss_pred -CEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc-----CCccCcceEECCCCCEEEEEeCCC-----
Confidence 999999975 249999999887666543 256899999999997 99999752
Q ss_pred cceeeeeccCCCceEEEEeCCC---CcEEEecCCCCCcceeEE
Q 039124 219 DHFFILLEGESTGRLLRYDPPT---KSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 219 ~~~~~~~e~~~~GrL~rydp~t---g~~~vl~~~L~~pNGval 258 (259)
++|++|+.++ ++.+++.+ +..|+||++
T Consensus 207 ------------~~I~~~~~~~~~~~~~~~~~~-~~gP~gi~~ 236 (322)
T 2fp8_A 207 ------------HQIVKYWLEGPKKGTAEVLVK-IPNPGNIKR 236 (322)
T ss_dssp ------------TEEEEEESSSTTTTCEEEEEE-CSSEEEEEE
T ss_pred ------------CeEEEEECCCCcCCccceEEe-CCCCCCeEE
Confidence 4788888764 34454443 222788764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-10 Score=109.56 Aligned_cols=138 Identities=14% Similarity=0.090 Sum_probs=96.6
Q ss_pred CCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccE-EEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 78 EVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGW-ETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 78 ~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~-~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.+..|.++++|+ +|++|+++..+++|+++++++... ..+. . ....+.+.+|+++
T Consensus 226 ~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~-~-----------------------~~~~~~~~~ia~d 281 (433)
T 4hw6_A 226 NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEV-M-----------------------MDTKGSNFHIVWH 281 (433)
T ss_dssp ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEE-E-----------------------CSCCSSCEEEEEC
T ss_pred ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEe-c-----------------------cCCCCCcccEEEe
Confidence 468999999999 889777888999999999974433 2211 0 0112345689999
Q ss_pred CCCCc-EEEEeCCCc-eEEEECC--CCeE---EEeeec--C----CC----CCccccccEEE---------cCCCcEEEe
Q 039124 156 KDTGD-LYIADAYYG-LLVVGSK--GGLA---TPLATQ--A----GG----KPILFANDLDV---------HKNGSIFFT 209 (259)
Q Consensus 156 ~~~G~-L~VaD~~~G-l~~v~~~--gg~~---~~l~~~--~----~g----~pl~~~Ndl~v---------d~dG~IyfT 209 (259)
++ |+ |||+|...+ |++++.+ ++.. ..++.. . +| ..++.|+++++ +++|+|||+
T Consensus 282 pd-G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyva 360 (433)
T 4hw6_A 282 PT-GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFC 360 (433)
T ss_dssp TT-SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEE
T ss_pred CC-CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEE
Confidence 95 76 999998875 8888765 3422 344432 1 11 25788999999 999999999
Q ss_pred cCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEEecC-----------C-------CCCcceeEE
Q 039124 210 DTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVR-----------W-------LGFSKWSTI 258 (259)
Q Consensus 210 Dss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~-----------~-------L~~pNGval 258 (259)
|+.+ .||.+++|+ |+++.++. + |..|.||++
T Consensus 361 D~~n-----------------~~I~~~~~~-G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giav 409 (433)
T 4hw6_A 361 DRDS-----------------HTVRVLTPE-GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAY 409 (433)
T ss_dssp ETTT-----------------TEEEEECTT-SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEE
T ss_pred ECCC-----------------CEEEEECCC-CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEE
Confidence 9864 377777774 66665542 2 567888875
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.8e-10 Score=95.65 Aligned_cols=134 Identities=15% Similarity=0.112 Sum_probs=93.4
Q ss_pred CCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 77 DEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 77 ~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
.....|+++++|++|++|+++..++.|.++++++. +..+. .......|.++++++
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~-~~~~~------------------------~~~~~~~~~~i~~~~ 71 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQSGR-IKEFE------------------------VPTPDAKVMCLIVSS 71 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEE------------------------CSSTTCCEEEEEECT
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCCCc-eEEEE------------------------CCCCCCcceeEEECC
Confidence 45789999999999997777777899999998843 33221 011245799999998
Q ss_pred CCCcEEEEeCCC-ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEE
Q 039124 157 DTGDLYIADAYY-GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLR 235 (259)
Q Consensus 157 ~~G~L~VaD~~~-Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~r 235 (259)
+|++||++... +|++++++ ++.+.+.... ....|++++++++|++|+++.. .++|++
T Consensus 72 -~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~ 129 (300)
T 2qc5_A 72 -LGDIWFTENGANKIGKLSKK-GGFTEYPLPQ---PDSGPYGITEGLNGDIWFTQLN-----------------GDRIGK 129 (300)
T ss_dssp -TSCEEEEETTTTEEEEECTT-SCEEEEECSS---TTCCEEEEEECSTTCEEEEETT-----------------TTEEEE
T ss_pred -CCCEEEEecCCCeEEEECCC-CCeEEecCCC---CCCCCccceECCCCCEEEEccC-----------------CCeEEE
Confidence 59999999855 49999998 5454443221 2357999999999999999864 246777
Q ss_pred EeCCCCcEEEe-c-CCCCCcceeEE
Q 039124 236 YDPPTKSNSYC-V-RWLGFSKWSTI 258 (259)
Q Consensus 236 ydp~tg~~~vl-~-~~L~~pNGval 258 (259)
+|++ ++.+.. + .....|+++++
T Consensus 130 ~~~~-g~~~~~~~~~~~~~~~~i~~ 153 (300)
T 2qc5_A 130 LTAD-GTIYEYDLPNKGSYPAFITL 153 (300)
T ss_dssp ECTT-SCEEEEECSSTTCCEEEEEE
T ss_pred ECCC-CCEEEccCCCCCCCceeEEE
Confidence 7776 554432 1 23445555543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.3e-10 Score=101.01 Aligned_cols=162 Identities=15% Similarity=0.102 Sum_probs=104.9
Q ss_pred CCCCCceeEEEcCCCCEEEEEcC-----CCeEEEEeCCCcc-EEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 77 DEVFGPESLEFDGLGRGPYTGLA-----DGRIVRWMGENVG-WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 77 ~~l~gPE~ia~D~~G~~~yt~~~-----~G~I~ri~~~~~~-~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
+.+..|.++++|++|++|+++.. +++|++++..+.. ...+... + .......+|.
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~-----~---------------~~~~~~~~~~ 123 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLP-----P---------------PITLSNSFVN 123 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECC-----T---------------TTSCTTCCCC
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECC-----h---------------hhcccccccc
Confidence 46789999999999998788765 6899999987553 2222110 0 0012235689
Q ss_pred eEEEeCCCCcEEEEeC---C-CceEEEECCCCeEEEeeec------------CCCCCc-------------cccccEEEc
Q 039124 151 GLRFNKDTGDLYIADA---Y-YGLLVVGSKGGLATPLATQ------------AGGKPI-------------LFANDLDVH 201 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~---~-~Gl~~v~~~gg~~~~l~~~------------~~g~pl-------------~~~Ndl~vd 201 (259)
++++++++|.+||+|. . .+|+++|+++++...+... .+|..+ ..+|+++++
T Consensus 124 ~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s 203 (343)
T 2qe8_A 124 DLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLD 203 (343)
T ss_dssp EEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEEC
T ss_pred eEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEec
Confidence 9999965589999997 3 4699999987765443311 122211 247999999
Q ss_pred CCCc-EEEecCCCC--CCc-----c----------------------ccee------eeeccCCCceEEEEeCCCCcEEE
Q 039124 202 KNGS-IFFTDTSKR--YNR-----V----------------------DHFF------ILLEGESTGRLLRYDPPTKSNSY 245 (259)
Q Consensus 202 ~dG~-IyfTDss~~--~~~-----~----------------------~~~~------~~~e~~~~GrL~rydp~tg~~~v 245 (259)
+||+ +|++++.+. |.. . +.+. ........++|.++|+++|+.+.
T Consensus 204 ~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~ 283 (343)
T 2qe8_A 204 AENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKL 283 (343)
T ss_dssp TTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEE
T ss_pred cCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEE
Confidence 9996 999987652 100 0 0000 00111234589999995588777
Q ss_pred ecCC--CCCcceeEE
Q 039124 246 CVRW--LGFSKWSTI 258 (259)
Q Consensus 246 l~~~--L~~pNGval 258 (259)
+... +.+|.++++
T Consensus 284 ~~~~~~~~~p~~va~ 298 (343)
T 2qe8_A 284 LVTDEKLSWTDSFNF 298 (343)
T ss_dssp EEECGGGSCEEEEEE
T ss_pred EEECCceecCCeeEE
Confidence 6643 788999986
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.22 E-value=8.7e-11 Score=107.13 Aligned_cols=162 Identities=10% Similarity=0.010 Sum_probs=105.3
Q ss_pred eEEccCCCCCceeEEEcCCCC-EEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 72 KLEFVDEVFGPESLEFDGLGR-GPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~G~-~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
|.+.. .+..|.+++++++|+ ++++. ..|+|++++.++...+.++ ...+ ......+.|+
T Consensus 11 ~~va~-~l~~P~~i~~~pdG~~l~V~e-~~G~i~~~~~~g~~~~~~~----~~~~---------------v~~~g~~g~~ 69 (353)
T 2g8s_A 11 EVLQD-KLDHPWALAFLPDNHGMLITL-RGGELRHWQAGKGLSAPLS----GVPD---------------VWAHGQGGLL 69 (353)
T ss_dssp EEEEE-EESSEEEEEECSTTCCEEEEE-TTTEEEEEETTTEECCCCB----SCCC---------------CCCSTTCSEE
T ss_pred EEEEC-CCCCcEEEEEcCCCCEEEEEe-CCceEEEEeCCCceeeEec----CCcc---------------cccCCCCCce
Confidence 44544 488999999999998 66555 5799999987654100010 0000 0112235689
Q ss_pred eEEEeCC---CCcEEEEeCC--------CceEEEECCCC-----eEEEeeecCCC--CCccccccEEEcCCCcEEEecCC
Q 039124 151 GLRFNKD---TGDLYIADAY--------YGLLVVGSKGG-----LATPLATQAGG--KPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 151 Gl~~d~~---~G~L~VaD~~--------~Gl~~v~~~gg-----~~~~l~~~~~g--~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
||+++++ +|.|||++.. ..|.+++.+++ ..+.+.+.... ...+++++|++++||.||++...
T Consensus 70 gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 70 DVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp EEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred eEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence 9999984 5899999764 24777765432 23444444332 24567999999999999999754
Q ss_pred CCCCcccceeeeeccCCCceEEEEeCCCC-------------cEEEecCCCCCcceeEE
Q 039124 213 KRYNRVDHFFILLEGESTGRLLRYDPPTK-------------SNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 213 ~~~~~~~~~~~~~e~~~~GrL~rydp~tg-------------~~~vl~~~L~~pNGval 258 (259)
... ....++ .....|+++|+|++.. ..++...++.-|+|+++
T Consensus 150 ~~~--~~~~q~--~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~ 204 (353)
T 2g8s_A 150 NNQ--RPTAQD--LDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAM 204 (353)
T ss_dssp TTC--GGGGGC--TTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEE
T ss_pred CCC--CCccCC--CCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEE
Confidence 321 011111 1245789999999843 45778889999999986
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-09 Score=93.33 Aligned_cols=133 Identities=11% Similarity=0.076 Sum_probs=92.1
Q ss_pred CCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 78 EVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
....|.++++|++|++++++..+++|.++++++. ...+.. ......|.++++++
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~-~~~~~~------------------------~~~~~~~~~i~~~~- 113 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGG-FTEYPL------------------------PQPDSGPYGITEGL- 113 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEEC------------------------SSTTCCEEEEEECS-
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCCCC-eEEecC------------------------CCCCCCCccceECC-
Confidence 4578999999999997777767899999998854 333210 11235689999998
Q ss_pred CCcEEEEeCC-CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEE
Q 039124 158 TGDLYIADAY-YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRY 236 (259)
Q Consensus 158 ~G~L~VaD~~-~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ry 236 (259)
+|+|||++.. .+|++++++ ++...+.. . .....|++++++++|++|+++... ++|++|
T Consensus 114 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~~--~-~~~~~~~~i~~d~~g~l~v~~~~~-----------------~~i~~~ 172 (300)
T 2qc5_A 114 NGDIWFTQLNGDRIGKLTAD-GTIYEYDL--P-NKGSYPAFITLGSDNALWFTENQN-----------------NSIGRI 172 (300)
T ss_dssp TTCEEEEETTTTEEEEECTT-SCEEEEEC--S-STTCCEEEEEECTTSSEEEEETTT-----------------TEEEEE
T ss_pred CCCEEEEccCCCeEEEECCC-CCEEEccC--C-CCCCCceeEEECCCCCEEEEecCC-----------------CeEEEE
Confidence 5999999975 469999998 54443321 1 135689999999999999998642 356777
Q ss_pred eCCCCcEEEec--CCCCCcceeEE
Q 039124 237 DPPTKSNSYCV--RWLGFSKWSTI 258 (259)
Q Consensus 237 dp~tg~~~vl~--~~L~~pNGval 258 (259)
|+ +++...+. ..+..|+++++
T Consensus 173 ~~-~g~~~~~~~~~~~~~~~~i~~ 195 (300)
T 2qc5_A 173 TN-TGKLEEYPLPTNAAAPVGITS 195 (300)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEE
T ss_pred CC-CCcEEEeeCCCCCCCcceEEE
Confidence 76 35544332 23445555543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.1e-10 Score=104.50 Aligned_cols=124 Identities=13% Similarity=-0.004 Sum_probs=90.4
Q ss_pred CCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 78 EVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
++..|.++++|++|++|+++..+++|.+|+.++....++. .....|. ++++++
T Consensus 129 ~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~--------------------------~~~~~~~-ia~~~~ 181 (409)
T 3hrp_A 129 KFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH--------------------------PGFKGGK-PAVTKD 181 (409)
T ss_dssp CCCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE--------------------------ETCCBCB-CEECTT
T ss_pred ccCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee--------------------------ccCCCCc-eeEecC
Confidence 5789999999999998888888899999999865333221 1123466 999996
Q ss_pred CCcEEEEeCCC--ceEEEECCCCeEEEeeecCCCCCccccccEEEcC-CCcEEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 158 TGDLYIADAYY--GLLVVGSKGGLATPLATQAGGKPILFANDLDVHK-NGSIFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 158 ~G~L~VaD~~~--Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
++.||++|... .|++++++++................|+++++++ +|+||++|. .|+|+
T Consensus 182 g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~------------------~~~I~ 243 (409)
T 3hrp_A 182 KQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS------------------NKNFG 243 (409)
T ss_dssp SSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT------------------TCEEE
T ss_pred CCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC------------------CCcEE
Confidence 44688998755 5999998876532222222222457899999999 799999764 25788
Q ss_pred EEeCCCCcEEEe
Q 039124 235 RYDPPTKSNSYC 246 (259)
Q Consensus 235 rydp~tg~~~vl 246 (259)
+||+++++.+++
T Consensus 244 ~~d~~~~~~~~~ 255 (409)
T 3hrp_A 244 RFNVKTQEVTLI 255 (409)
T ss_dssp EEETTTCCEEEE
T ss_pred EEECCCCCEEEE
Confidence 999887776665
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=9.4e-10 Score=94.25 Aligned_cols=133 Identities=11% Similarity=0.090 Sum_probs=92.9
Q ss_pred CCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 78 EVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
....|.++++|++|++|+++..+++|+++++++. ...+.. ......|.++++++
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~------------------------~~~~~~~~~i~~~~- 108 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKKGI-IKEYTL------------------------PNPDSAPYGITEGP- 108 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEEC------------------------SSTTCCEEEEEECT-
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc-EEEEeC------------------------CCcCCCceeeEECC-
Confidence 3478999999999997777677899999998754 333210 01245689999998
Q ss_pred CCcEEEEeCCC-ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEE
Q 039124 158 TGDLYIADAYY-GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRY 236 (259)
Q Consensus 158 ~G~L~VaD~~~-Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ry 236 (259)
+|+|||++... +|++++++ +....+... .....+++++++++|++|+++.. .++|++|
T Consensus 109 ~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~ 167 (299)
T 2z2n_A 109 NGDIWFTEMNGNRIGRITDD-GKIREYELP---NKGSYPSFITLGSDNALWFTENQ-----------------NNAIGRI 167 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-CCEEEEECS---STTCCEEEEEECTTSCEEEEETT-----------------TTEEEEE
T ss_pred CCCEEEEecCCceEEEECCC-CCEEEecCC---CCCCCCceEEEcCCCCEEEEeCC-----------------CCEEEEE
Confidence 49999998754 59999994 444444321 13457999999999999999853 2467777
Q ss_pred eCCCCcEEEe--cCCCCCcceeEE
Q 039124 237 DPPTKSNSYC--VRWLGFSKWSTI 258 (259)
Q Consensus 237 dp~tg~~~vl--~~~L~~pNGval 258 (259)
|+ +++.+.. ......|+++++
T Consensus 168 ~~-~g~~~~~~~~~~~~~~~~i~~ 190 (299)
T 2z2n_A 168 TE-SGDITEFKIPTPASGPVGITK 190 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEE
T ss_pred cC-CCcEEEeeCCCCCCcceeEEE
Confidence 77 5665543 234455666553
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-09 Score=92.53 Aligned_cols=134 Identities=13% Similarity=0.134 Sum_probs=91.7
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
......|.++++|++|++|+++..++.|.++++++. +..+.. ......|.+++++
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~-~~~~~~------------------------~~~~~~~~~i~~~ 65 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLDGK-ITEYPL------------------------PTPDAKVMCLTIS 65 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEC------------------------SSTTCCEEEEEEC
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCCCC-eEEecC------------------------CcccCceeeEEEC
Confidence 344678999999999996666666899999998843 333210 1123568999999
Q ss_pred CCCCcEEEEeCCC-ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 156 KDTGDLYIADAYY-GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 156 ~~~G~L~VaD~~~-Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
+ +|++||++... +|+++++++. .+.+... .....|++++++++|++|+++.. .++|+
T Consensus 66 ~-~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~ 123 (299)
T 2z2n_A 66 S-DGEVWFTENAANKIGRITKKGI-IKEYTLP---NPDSAPYGITEGPNGDIWFTEMN-----------------GNRIG 123 (299)
T ss_dssp T-TSCEEEEETTTTEEEEECTTSC-EEEEECS---STTCCEEEEEECTTSCEEEEETT-----------------TTEEE
T ss_pred C-CCCEEEeCCCCCeEEEECCCCc-EEEEeCC---CcCCCceeeEECCCCCEEEEecC-----------------CceEE
Confidence 9 59999998754 5999998854 4444321 13457999999999999999864 24566
Q ss_pred EEeCCCCcEEEec--CCCCCcceeE
Q 039124 235 RYDPPTKSNSYCV--RWLGFSKWST 257 (259)
Q Consensus 235 rydp~tg~~~vl~--~~L~~pNGva 257 (259)
++|+ +++.+... .....|++++
T Consensus 124 ~~d~-~g~~~~~~~~~~~~~~~~i~ 147 (299)
T 2z2n_A 124 RITD-DGKIREYELPNKGSYPSFIT 147 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEE
T ss_pred EECC-CCCEEEecCCCCCCCCceEE
Confidence 7776 45544332 2344555554
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.4e-09 Score=90.78 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=77.3
Q ss_pred CCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 78 EVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
....|.++++|++|++++++..+++|.++++..+....+... .......+|.++++++
T Consensus 67 ~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~---------------------~~~~~~~~~~~i~~d~- 124 (296)
T 3e5z_A 67 PSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADS---------------------FEGKKLNSPNDVCLAP- 124 (296)
T ss_dssp SCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECE---------------------ETTEECCCCCCEEECT-
T ss_pred CCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeec---------------------cCCCCCCCCCCEEECC-
Confidence 346799999999999666666678999999854434432110 0012345789999999
Q ss_pred CCcEEEEeC------------------CCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 158 TGDLYIADA------------------YYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 158 ~G~L~VaD~------------------~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
+|++||+|+ ..+|++++++ +..+.+.. .+..||++++++||+++++|+.
T Consensus 125 ~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-----~~~~~~gi~~s~dg~~lv~~~~ 191 (296)
T 3e5z_A 125 DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR-----DRVKPNGLAFLPSGNLLVSDTG 191 (296)
T ss_dssp TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC-----CCSSEEEEEECTTSCEEEEETT
T ss_pred CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec-----CCCCCccEEECCCCCEEEEeCC
Confidence 499999975 2369999988 54555532 2557999999999997798875
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-09 Score=94.68 Aligned_cols=105 Identities=13% Similarity=0.100 Sum_probs=78.1
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
...|.++++|++|+++.++..+++|.+++.++. .+.++.. .......+|..+++++ +
T Consensus 85 ~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~-~~~~~~~---------------------~~~~~~~~~~~i~~d~-d 141 (305)
T 3dr2_A 85 TAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQ-AHLLVGR---------------------YAGKRLNSPNDLIVAR-D 141 (305)
T ss_dssp CSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEECE---------------------ETTEECSCCCCEEECT-T
T ss_pred CCccceeeECCCCCEEEEECCCCEEEEECCCCC-EEEEEec---------------------cCCCccCCCCCEEECC-C
Confidence 467999999999996555556689999998754 4433211 0012245689999999 4
Q ss_pred CcEEEEeC------------------CCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCC
Q 039124 159 GDLYIADA------------------YYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTS 212 (259)
Q Consensus 159 G~L~VaD~------------------~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss 212 (259)
|++|++|. ..+|+++++++++.+.+. .+..||++++++||+ +|++|+.
T Consensus 142 G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~------~~~~p~gl~~spdg~~lyv~~~~ 208 (305)
T 3dr2_A 142 GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA------DLDHPNGLAFSPDEQTLYVSQTP 208 (305)
T ss_dssp SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE------EESSEEEEEECTTSSEEEEEECC
T ss_pred CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe------cCCCCcceEEcCCCCEEEEEecC
Confidence 99999874 235999999877766654 245799999999997 9999975
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.8e-09 Score=96.40 Aligned_cols=137 Identities=17% Similarity=0.101 Sum_probs=94.5
Q ss_pred CCceeEEEcCCCCEEEEEcCC----------CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 80 FGPESLEFDGLGRGPYTGLAD----------GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~----------G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
..|.++++|++|++|+++..+ +.|.+|++.+...... +. .+.+..|
T Consensus 172 ~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~-----------------------~~-~~~g~~p 227 (328)
T 3dsm_A 172 IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ-----------------------FK-FKLGDWP 227 (328)
T ss_dssp SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE-----------------------EE-CCTTCCC
T ss_pred CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEE-----------------------Ee-cCCCCCc
Confidence 579999999999966666554 7899999876532210 11 1123479
Q ss_pred ceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcC-CCcEEEecCCCCCCcccceeeeeccC
Q 039124 150 LGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHK-NGSIFFTDTSKRYNRVDHFFILLEGE 228 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTDss~~~~~~~~~~~~~e~~ 228 (259)
.+++++++++.|||++. .++++|.++++... ...+.. ....|+++++++ +|+||+++... | .
T Consensus 228 ~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~-~~~~~~-~~~~p~gi~vdp~~g~lyva~~~~-y------------~ 290 (328)
T 3dsm_A 228 SEVQLNGTRDTLYWINN--DIWRMPVEADRVPV-RPFLEF-RDTKYYGLTVNPNNGEVYVADAID-Y------------Q 290 (328)
T ss_dssp EEEEECTTSCEEEEESS--SEEEEETTCSSCCS-SCSBCC-CSSCEEEEEECTTTCCEEEEECTT-S------------S
T ss_pred eeEEEecCCCEEEEEcc--EEEEEECCCCceee-eeeecC-CCCceEEEEEcCCCCeEEEEcccc-c------------c
Confidence 99999986578899987 79999998876321 011111 146799999998 78899999532 1 2
Q ss_pred CCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 229 STGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 229 ~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
.+|+|++||++ |+...-++-=..|+++++
T Consensus 291 ~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 291 QQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp SEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred cCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence 35799999998 665444343456777765
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.6e-09 Score=102.15 Aligned_cols=137 Identities=10% Similarity=-0.019 Sum_probs=90.4
Q ss_pred CCCceeEEEcC-CCCEEEEEcCCCeEEEEeCC-------CccE-EEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 79 VFGPESLEFDG-LGRGPYTGLADGRIVRWMGE-------NVGW-ETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 79 l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~-------~~~~-~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
..+|.++++|+ ++.+||++..+|+|+|++.+ +... ..... . .+. . .+.+......+.|
T Consensus 246 ~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~------~-~~g-~-----~~~l~~~~~~~~p 312 (496)
T 3kya_A 246 YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK------N-NPN-T-----FKQLFTIADPSWE 312 (496)
T ss_dssp ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG------G-CTT-T-----EEEEEECSSSSCC
T ss_pred CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc------c-ccc-c-----cceeEecCCCCCc
Confidence 57899999999 67888889999999999986 3311 00000 0 000 0 0000111234578
Q ss_pred ceEEEeCCCCc-EEEEeCCCc-eEEEECCC--CeE---EEeeec--C----CC----CCccccc-cEEEc-------CCC
Q 039124 150 LGLRFNKDTGD-LYIADAYYG-LLVVGSKG--GLA---TPLATQ--A----GG----KPILFAN-DLDVH-------KNG 204 (259)
Q Consensus 150 lGl~~d~~~G~-L~VaD~~~G-l~~v~~~g--g~~---~~l~~~--~----~g----~pl~~~N-dl~vd-------~dG 204 (259)
.+|+++++ |+ |||||...+ |++++.++ +.+ ++++.. . +| ..|+.|. +++++ ++|
T Consensus 313 ~~ia~~p~-G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g 391 (496)
T 3kya_A 313 FQIFIHPT-GKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY 391 (496)
T ss_dssp EEEEECTT-SSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE
T ss_pred eEEEEcCC-CCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC
Confidence 99999995 87 899998876 88876543 332 344432 1 22 2578999 78887 789
Q ss_pred cEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEEec
Q 039124 205 SIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCV 247 (259)
Q Consensus 205 ~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~ 247 (259)
+|||+|+.. .||.+++++ |.++.++
T Consensus 392 ~lyVaD~~N-----------------~rIr~i~~~-G~v~Tia 416 (496)
T 3kya_A 392 DFYFVDRLN-----------------FCVRKVTPE-GIVSTYA 416 (496)
T ss_dssp EEEEEEGGG-----------------TEEEEECTT-CBEEEEE
T ss_pred eEEEEECCC-----------------CEEEEEeCC-CCEEEEe
Confidence 999999864 378888875 7776664
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.04 E-value=5.8e-09 Score=91.47 Aligned_cols=134 Identities=13% Similarity=0.118 Sum_probs=87.8
Q ss_pred CCCceeEEEcCCCCEEEEEc-----------CCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCC
Q 039124 79 VFGPESLEFDGLGRGPYTGL-----------ADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCG 147 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~-----------~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g 147 (259)
...|.++++|++|++|+++. ..+.|+++++++. .... .....
T Consensus 97 ~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~--------------------------~~~~~ 149 (297)
T 3g4e_A 97 NNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKY--------------------------FDQVD 149 (297)
T ss_dssp SEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEE--------------------------EEEES
T ss_pred CCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEE--------------------------eeccc
Confidence 35688999999999655553 3468999998764 2221 01134
Q ss_pred CcceEEEeCCCCcEEEEeCCCc-eEEEEC--CCCeEE---EeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccce
Q 039124 148 RPLGLRFNKDTGDLYIADAYYG-LLVVGS--KGGLAT---PLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHF 221 (259)
Q Consensus 148 rPlGl~~d~~~G~L~VaD~~~G-l~~v~~--~gg~~~---~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~ 221 (259)
.|+|+++++++..||++|...+ |++++. ++|... .+.. ... ....|+++++|++|+||+++..
T Consensus 150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~-~~~-~~~~p~g~~~d~~G~lwva~~~--------- 218 (297)
T 3g4e_A 150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYK-LEK-EEQIPDGMCIDAEGKLWVACYN--------- 218 (297)
T ss_dssp BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEE-CCG-GGCEEEEEEEBTTSCEEEEEET---------
T ss_pred cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEE-CCC-CCCCCCeeEECCCCCEEEEEcC---------
Confidence 6899999995335999998755 777764 555432 2322 221 1247999999999999999853
Q ss_pred eeeeccCCCceEEEEeCCCCcEEEec-CCCCCcceeEE
Q 039124 222 FILLEGESTGRLLRYDPPTKSNSYCV-RWLGFSKWSTI 258 (259)
Q Consensus 222 ~~~~e~~~~GrL~rydp~tg~~~vl~-~~L~~pNGval 258 (259)
.++|++|||+||+....+ -.-..+..++|
T Consensus 219 --------~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f 248 (297)
T 3g4e_A 219 --------GGRVIRLDPVTGKRLQTVKLPVDKTTSCCF 248 (297)
T ss_dssp --------TTEEEEECTTTCCEEEEEECSSSBEEEEEE
T ss_pred --------CCEEEEEcCCCceEEEEEECCCCCceEEEE
Confidence 358999999877754332 22234444443
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.02 E-value=7e-09 Score=99.10 Aligned_cols=133 Identities=11% Similarity=0.078 Sum_probs=93.1
Q ss_pred CCCCCceeEEEcCCCC-EEEEEcCCCeEEEEeCCCcc--E---EEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 77 DEVFGPESLEFDGLGR-GPYTGLADGRIVRWMGENVG--W---ETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 77 ~~l~gPE~ia~D~~G~-~~yt~~~~G~I~ri~~~~~~--~---~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
+.-..|-+++||++|+ +|+++..+++|+|++.++.. + .+|+......+ ..||. .....+..|.
T Consensus 307 ~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G--~~DG~---------~~~a~f~~P~ 375 (496)
T 3kya_A 307 ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSG--YRDDV---------GTEARMNNPC 375 (496)
T ss_dssp SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCC--CBCCB---------GGGCBCSSEE
T ss_pred CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCc--ccCCc---------ccccccCCCe
Confidence 3345688999999999 67778889999998766531 1 34443210000 01211 1234577899
Q ss_pred -eEEEe-------CCCCcEEEEeCCCc-eEEEECCCCeEEEeeec--------------CCC-----CCccccccEEEcC
Q 039124 151 -GLRFN-------KDTGDLYIADAYYG-LLVVGSKGGLATPLATQ--------------AGG-----KPILFANDLDVHK 202 (259)
Q Consensus 151 -Gl~~d-------~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~--------------~~g-----~pl~~~Ndl~vd~ 202 (259)
|++++ . +|+|||||...+ |.++++++ .+++++.. .+| ..|+.|.+|++++
T Consensus 376 ~gv~vd~~~~~~~~-~g~lyVaD~~N~rIr~i~~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 376 QGVFVKNPDYTGEE-EYDFYFVDRLNFCVRKVTPEG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEEEEECTTCCSSC-CEEEEEEEGGGTEEEEECTTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEEEEccccccccC-CCeEEEEECCCCEEEEEeCCC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 88887 5 589999999876 88889765 67777643 123 1588999999999
Q ss_pred C-CcEEEecCCCCCCcccceeeeeccCCCceEEEEeCC
Q 039124 203 N-GSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPP 239 (259)
Q Consensus 203 d-G~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~ 239 (259)
+ |+||++|+.+. |+.+++++
T Consensus 454 ~~g~lyVaD~~N~-----------------rIrki~~~ 474 (496)
T 3kya_A 454 VKEMFYVHDQVGH-----------------TIRTISME 474 (496)
T ss_dssp TTTEEEEEETTTT-----------------EEEEEEEC
T ss_pred CCCEEEEEeCCCC-----------------EEEEEECC
Confidence 7 99999998753 78888876
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-08 Score=89.17 Aligned_cols=146 Identities=14% Similarity=0.105 Sum_probs=96.5
Q ss_pred CCCCceeEEEcCCCCEEEEEc-CCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 78 EVFGPESLEFDGLGRGPYTGL-ADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~-~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
....|++++++++|+ +|++. .+++|.+++......... .. .. ........|.+|+++
T Consensus 82 ~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~-i~--------~g-----------~~~~~~~~p~~i~~~- 139 (328)
T 3dsm_A 82 GFTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGY-IE--------CP-----------DMDMESGSTEQMVQY- 139 (328)
T ss_dssp CCSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEE-EE--------CT-----------TCCTTTCBCCCEEEE-
T ss_pred CCCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEE-EE--------cC-----------CccccCCCcceEEEE-
Confidence 358899999988886 56555 889999999876532210 00 00 001112379999995
Q ss_pred CCCcEEEEeC--CCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 157 DTGDLYIADA--YYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 157 ~~G~L~VaD~--~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
++.|||++. ...|.++|+++++....+.. + ..|++++++++|++|+++.... .... . ....++|+
T Consensus 140 -~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~--g---~~p~~i~~~~dG~l~v~~~~~~-~~~~-----~-~~~~~~v~ 206 (328)
T 3dsm_A 140 -GKYVYVNCWSYQNRILKIDTETDKVVDELTI--G---IQPTSLVMDKYNKMWTITDGGY-EGSP-----Y-GYEAPSLY 206 (328)
T ss_dssp -TTEEEEEECTTCCEEEEEETTTTEEEEEEEC--S---SCBCCCEECTTSEEEEEBCCBC-TTCS-----S-CBCCCEEE
T ss_pred -CCEEEEEcCCCCCEEEEEECCCCeEEEEEEc--C---CCccceEEcCCCCEEEEECCCc-cCCc-----c-ccCCceEE
Confidence 489999996 34599999998864433321 1 3589999999999999987542 1100 0 11257999
Q ss_pred EEeCCCCcEEEecC--CCCCcceeEE
Q 039124 235 RYDPPTKSNSYCVR--WLGFSKWSTI 258 (259)
Q Consensus 235 rydp~tg~~~vl~~--~L~~pNGval 258 (259)
++|++|+++...+. .-..|+++++
T Consensus 207 ~id~~t~~v~~~~~~~~g~~p~~la~ 232 (328)
T 3dsm_A 207 RIDAETFTVEKQFKFKLGDWPSEVQL 232 (328)
T ss_dssp EEETTTTEEEEEEECCTTCCCEEEEE
T ss_pred EEECCCCeEEEEEecCCCCCceeEEE
Confidence 99999887653321 1236888876
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.9e-08 Score=85.68 Aligned_cols=105 Identities=19% Similarity=0.230 Sum_probs=76.6
Q ss_pred CCCceeEEEcCCCCEEEEEcCC----CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 79 VFGPESLEFDGLGRGPYTGLAD----GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~----G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
-..|.++++|++|++++++..+ +.|++++.++.....+. .......+|.++++
T Consensus 86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-----------------------~~~~~~~~~~~i~~ 142 (333)
T 2dg1_A 86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII-----------------------EDLSTAYCIDDMVF 142 (333)
T ss_dssp SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE-----------------------CSSSSCCCEEEEEE
T ss_pred CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE-----------------------ccCccCCcccceEE
Confidence 4679999999999966666555 68999998776322110 00112356899999
Q ss_pred eCCCCcEEEEeCC-------CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCC
Q 039124 155 NKDTGDLYIADAY-------YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTS 212 (259)
Q Consensus 155 d~~~G~L~VaD~~-------~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss 212 (259)
+++ |++||++.. .+|+++++++++.+.+... +..++++++++||+ +|++++.
T Consensus 143 d~~-g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~i~~~~dg~~l~v~~~~ 202 (333)
T 2dg1_A 143 DSK-GGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-----ISVANGIALSTDEKVLWVTETT 202 (333)
T ss_dssp CTT-SCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE-----ESSEEEEEECTTSSEEEEEEGG
T ss_pred CCC-CCEEEEeccccccCCCceEEEEeCCCCEEEEeecC-----CCcccceEECCCCCEEEEEeCC
Confidence 994 999999874 4699999988766655432 34689999999997 9999853
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.91 E-value=4.2e-08 Score=84.94 Aligned_cols=118 Identities=15% Similarity=0.114 Sum_probs=79.7
Q ss_pred CCceeEEEcCCCCEEEEEcCC---------------CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccC
Q 039124 80 FGPESLEFDGLGRGPYTGLAD---------------GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEK 144 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~---------------G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~ 144 (259)
..|.++++|++|++|+++..+ +.|+++++++. ...+. .
T Consensus 117 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~--------------------------~ 169 (314)
T 1pjx_A 117 QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ-MIQVD--------------------------T 169 (314)
T ss_dssp BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC-EEEEE--------------------------E
T ss_pred cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCC-EEEec--------------------------c
Confidence 468999999999977666554 68999998743 32210 1
Q ss_pred cCCCcceEEEe----CCCC-cEEEEeCCC-ceEEEECC-CCeEEE--eeecCCCCCccccccEEEcCCCcEEEecCCCCC
Q 039124 145 WCGRPLGLRFN----KDTG-DLYIADAYY-GLLVVGSK-GGLATP--LATQAGGKPILFANDLDVHKNGSIFFTDTSKRY 215 (259)
Q Consensus 145 ~~grPlGl~~d----~~~G-~L~VaD~~~-Gl~~v~~~-gg~~~~--l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~ 215 (259)
....|.|++++ ++ | .|||+|... +|++++.+ ++.... ......+..+..|+++++|++|++|+++...
T Consensus 170 ~~~~~~~i~~~~~~d~d-g~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~-- 246 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGR-PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS-- 246 (314)
T ss_dssp EESSEEEEEEEECTTSC-EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT--
T ss_pred CCCCcceEEEecccCCC-CCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC--
Confidence 13458899999 85 6 689999764 58888865 343221 1222333222578999999999999998532
Q ss_pred CcccceeeeeccCCCceEEEEeCCCCc
Q 039124 216 NRVDHFFILLEGESTGRLLRYDPPTKS 242 (259)
Q Consensus 216 ~~~~~~~~~~e~~~~GrL~rydp~tg~ 242 (259)
++|++||+++++
T Consensus 247 ---------------~~i~~~d~~~g~ 258 (314)
T 1pjx_A 247 ---------------SHIEVFGPDGGQ 258 (314)
T ss_dssp ---------------TEEEEECTTCBS
T ss_pred ---------------CEEEEEcCCCCc
Confidence 367777776444
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.86 E-value=7.6e-08 Score=84.75 Aligned_cols=133 Identities=17% Similarity=0.142 Sum_probs=93.0
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
-...|+++.+. +++|..+..+++++.++.+...... + +. ..+.+.|++.|.
T Consensus 86 ~~FgeGit~~g-~~ly~ltw~~~~v~v~D~~t~~~~~---------t--------------i~---~~~eG~glt~dg-- 136 (262)
T 3nol_A 86 RYFGEGISDWK-DKIVGLTWKNGLGFVWNIRNLRQVR---------S--------------FN---YDGEGWGLTHND-- 136 (262)
T ss_dssp TCCEEEEEEET-TEEEEEESSSSEEEEEETTTCCEEE---------E--------------EE---CSSCCCCEEECS--
T ss_pred ccceeEEEEeC-CEEEEEEeeCCEEEEEECccCcEEE---------E--------------EE---CCCCceEEecCC--
Confidence 34568999863 3544445568999999987652111 0 11 123457888774
Q ss_pred CcEEEEeCCCceEEEECCCCeEE-EeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEe
Q 039124 159 GDLYIADAYYGLLVVGSKGGLAT-PLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYD 237 (259)
Q Consensus 159 G~L~VaD~~~Gl~~v~~~gg~~~-~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ryd 237 (259)
+.||++|....|..+|+++.+.. .+....+|.++..+|.+... +|+||+....+ ..|+++|
T Consensus 137 ~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~-----------------~~I~vID 198 (262)
T 3nol_A 137 QYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQT-----------------NKIVRID 198 (262)
T ss_dssp SCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS-----------------SEEEEEC
T ss_pred CEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccC-----------------CeEEEEE
Confidence 69999997666999999986533 23223467889999999987 89999987532 3899999
Q ss_pred CCCCcEEEec--CCC-----------CCcceeEE
Q 039124 238 PPTKSNSYCV--RWL-----------GFSKWSTI 258 (259)
Q Consensus 238 p~tg~~~vl~--~~L-----------~~pNGval 258 (259)
|+||++.-.+ .+| ..+||||+
T Consensus 199 p~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~ 232 (262)
T 3nol_A 199 PETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAW 232 (262)
T ss_dssp TTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEE
T ss_pred CCCCcEEEEEECCcCccccccccCcCCceEEEEE
Confidence 9999986544 223 47899997
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.86 E-value=8.4e-08 Score=83.61 Aligned_cols=135 Identities=13% Similarity=0.090 Sum_probs=95.2
Q ss_pred CCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 77 DEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 77 ~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
+.-..+|+++++ .+++|..+..+++++.++.+...... . . +..+.+.||+.|.
T Consensus 62 ~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~--t---------------------i---~~~~~Gwglt~dg 114 (243)
T 3mbr_X 62 PPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRA--R---------------------F---RYPGEGWALTSDD 114 (243)
T ss_dssp CTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEE--E---------------------E---ECSSCCCEEEECS
T ss_pred CCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEE--E---------------------E---eCCCCceEEeeCC
Confidence 334566999986 34545556678999999987652111 0 1 1124567887763
Q ss_pred CCCcEEEEeCCCceEEEECCCCeEE-EeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEE
Q 039124 157 DTGDLYIADAYYGLLVVGSKGGLAT-PLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLR 235 (259)
Q Consensus 157 ~~G~L~VaD~~~Gl~~v~~~gg~~~-~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~r 235 (259)
+.||++|....|..+|+++.+.. .+....+|.++.++|.+... +|+||.....+ ..+.+
T Consensus 115 --~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s-----------------~~I~v 174 (243)
T 3mbr_X 115 --SHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLT-----------------SRIAR 174 (243)
T ss_dssp --SCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTT-----------------TEEEE
T ss_pred --CEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCC-----------------CeEEE
Confidence 69999998667999999986532 33333477888999999987 89999888543 27999
Q ss_pred EeCCCCcEEEecC--C------------CCCcceeEE
Q 039124 236 YDPPTKSNSYCVR--W------------LGFSKWSTI 258 (259)
Q Consensus 236 ydp~tg~~~vl~~--~------------L~~pNGval 258 (259)
+||+||++.-.++ + ...+||||+
T Consensus 175 IDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~ 211 (243)
T 3mbr_X 175 IDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAF 211 (243)
T ss_dssp ECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEE
T ss_pred EECCCCCEEEEEECCcCccccccccCCcCCceEEEEE
Confidence 9999999865432 2 247899997
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-07 Score=83.45 Aligned_cols=137 Identities=20% Similarity=0.207 Sum_probs=96.5
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.+.-...|+++++ .+++|..+..+++++.++.+...... . +. ..+.+.|++.|
T Consensus 92 l~~~~FgeGit~~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~--t---------------------i~---~~~eGwGLt~D 144 (268)
T 3nok_A 92 RLGNIFAEGLASD-GERLYQLTWTEGLLFTWSGMPPQRER--T---------------------TR---YSGEGWGLCYW 144 (268)
T ss_dssp ECTTCCEEEEEEC-SSCEEEEESSSCEEEEEETTTTEEEE--E---------------------EE---CSSCCCCEEEE
T ss_pred CCCCcceeEEEEe-CCEEEEEEccCCEEEEEECCcCcEEE--E---------------------Ee---CCCceeEEecC
Confidence 4444567999986 34655556678999999987652111 0 11 12346789887
Q ss_pred CCCCcEEEEeCCCceEEEECCCCeEE-EeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 156 KDTGDLYIADAYYGLLVVGSKGGLAT-PLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 156 ~~~G~L~VaD~~~Gl~~v~~~gg~~~-~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
. +.||++|...-|..+|+++.+.. .+....++.++.++|.|... +|+||++...+ ..+.
T Consensus 145 g--~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s-----------------~~I~ 204 (268)
T 3nok_A 145 N--GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHS-----------------SDVL 204 (268)
T ss_dssp T--TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTC-----------------SEEE
T ss_pred C--CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCC-----------------CeEE
Confidence 4 69999997666999999986533 23223477788899999988 89999987532 3899
Q ss_pred EEeCCCCcEEEecC--CC------------CCcceeEEC
Q 039124 235 RYDPPTKSNSYCVR--WL------------GFSKWSTII 259 (259)
Q Consensus 235 rydp~tg~~~vl~~--~L------------~~pNGval~ 259 (259)
++||+||++.-.++ +| ..+||||+.
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~d 243 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVE 243 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEEC
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEc
Confidence 99999998764432 22 488999973
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-07 Score=83.85 Aligned_cols=134 Identities=17% Similarity=0.068 Sum_probs=83.6
Q ss_pred CCceeEEEcCCCCEEEEEcCC--CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 80 FGPESLEFDGLGRGPYTGLAD--GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~--G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
..|.+++++++|++|+++... .+|++++..+...+.++. ......|.|+++..
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~------------------------~~~~~~~~g~~~~~- 126 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLT------------------------LPDAIFLNGITPLS- 126 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEE------------------------CTTCSCEEEEEESS-
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEe------------------------CCCccccCcccccC-
Confidence 479999999999965555432 369998865543333211 01234578998876
Q ss_pred CCcEEEEeCCCc-eEEEECCCCeEEEee-ec-----CCCCCccccccEEEcCCC-cEEEecCCCCCCcccceeeeeccCC
Q 039124 158 TGDLYIADAYYG-LLVVGSKGGLATPLA-TQ-----AGGKPILFANDLDVHKNG-SIFFTDTSKRYNRVDHFFILLEGES 229 (259)
Q Consensus 158 ~G~L~VaD~~~G-l~~v~~~gg~~~~l~-~~-----~~g~pl~~~Ndl~vd~dG-~IyfTDss~~~~~~~~~~~~~e~~~ 229 (259)
++.+||+|...| |+++|++++..+... .. .....+..||++ ++|| .+|++|+..
T Consensus 127 ~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~---------------- 188 (306)
T 2p4o_A 127 DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEK---------------- 188 (306)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTT----------------
T ss_pred CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCC----------------
Confidence 488999997554 899999876433321 11 111246789998 6666 599999753
Q ss_pred CceEEEEeCCC-Cc---EEEecCCCCCcceeEE
Q 039124 230 TGRLLRYDPPT-KS---NSYCVRWLGFSKWSTI 258 (259)
Q Consensus 230 ~GrL~rydp~t-g~---~~vl~~~L~~pNGval 258 (259)
++|++||.+. ++ .+++.+ +..|.||++
T Consensus 189 -~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~v 219 (306)
T 2p4o_A 189 -MLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAF 219 (306)
T ss_dssp -TEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEE
T ss_pred -CEEEEEEeCCCCCCCccEEEec-cCCCCCeEE
Confidence 3677777653 22 223222 346666664
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-07 Score=83.75 Aligned_cols=137 Identities=13% Similarity=0.023 Sum_probs=94.7
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.+.-..+|+++++ .+.+|.+...+++|..++.+...... . +.. . .+.+.|++.|
T Consensus 62 l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~--~---------------------i~~-g-~~~g~glt~D 115 (266)
T 2iwa_A 62 MDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIK--N---------------------FTH-Q-MKDGWGLATD 115 (266)
T ss_dssp CCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEE--E---------------------EEC-C-SSSCCEEEEC
T ss_pred cCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEE--E---------------------EEC-C-CCCeEEEEEC
Confidence 4556788999997 34656667778999999987642111 0 111 1 1344666665
Q ss_pred CCCCcEEEEeCCCceEEEECCCCeEE-EeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 156 KDTGDLYIADAYYGLLVVGSKGGLAT-PLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 156 ~~~G~L~VaD~~~Gl~~v~~~gg~~~-~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
++.||++|...-|..+|+++.+.. .+.....+.|+.++|.+.+. +|.+|++... ++.|.
T Consensus 116 --g~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~-----------------~~~V~ 175 (266)
T 2iwa_A 116 --GKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ-----------------TDCIA 175 (266)
T ss_dssp --SSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT-----------------SSEEE
T ss_pred --CCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC-----------------CCeEE
Confidence 468999996556999999986532 33223356788899999998 8999998753 34899
Q ss_pred EEeCCCCcEEEec--CCC------------CCcceeEE
Q 039124 235 RYDPPTKSNSYCV--RWL------------GFSKWSTI 258 (259)
Q Consensus 235 rydp~tg~~~vl~--~~L------------~~pNGval 258 (259)
++|++|+++.-.+ .++ ..||||++
T Consensus 176 vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~ 213 (266)
T 2iwa_A 176 RISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAW 213 (266)
T ss_dssp EEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEE
T ss_pred EEECCCCcEEEEEECCCcccccccccccccCceEEEEE
Confidence 9999999875443 233 47899986
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=4.8e-07 Score=79.05 Aligned_cols=106 Identities=17% Similarity=0.176 Sum_probs=74.5
Q ss_pred ceeEEEcCCCCEEEEEc--CCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 82 PESLEFDGLGRGPYTGL--ADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~--~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
|.+++++++|+.+|++. .+++|+.++........ ........|.++++++++.
T Consensus 143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~-------------------------~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKT-------------------------AIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEE-------------------------EECCCCTTCCCCEEETTTT
T ss_pred CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEE-------------------------EecCCCCccceEEECCCCC
Confidence 88999999998777765 47889999987652111 0011233488999999644
Q ss_pred cEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCC
Q 039124 160 DLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTS 212 (259)
Q Consensus 160 ~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss 212 (259)
.||+++....+..+|.++++...........+...++++++++||+ +|+++..
T Consensus 198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 251 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK 251 (353)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC
Confidence 5888887666999999988654333322222455788999999998 8888754
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.6e-07 Score=80.05 Aligned_cols=144 Identities=13% Similarity=0.095 Sum_probs=98.6
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
..|..++++++|+.++++..+++|..+++++.. .+ .. ...+.|.++.+.+ +|
T Consensus 125 ~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~--~w------------------------~~-~~~~~~~~~~~~~-~g 176 (276)
T 3no2_A 125 AQFRQINKNKKGNYLVPLFATSEVREIAPNGQL--LN------------------------SV-KLSGTPFSSAFLD-NG 176 (276)
T ss_dssp GSCSCCEECTTSCEEEEETTTTEEEEECTTSCE--EE------------------------EE-ECSSCCCEEEECT-TS
T ss_pred ccccCceECCCCCEEEEecCCCEEEEECCCCCE--EE------------------------EE-ECCCCccceeEcC-CC
Confidence 356678888999999999999999999998652 11 11 1125688898888 59
Q ss_pred cEEEEeCCCc-eEEEECCCCe-EEEeee-cCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEE
Q 039124 160 DLYIADAYYG-LLVVGSKGGL-ATPLAT-QAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRY 236 (259)
Q Consensus 160 ~L~VaD~~~G-l~~v~~~gg~-~~~l~~-~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ry 236 (259)
+++|++...+ |+.+|+++|+ +..+.. ..++.++.++.++.+.++|++|++++.....- -. ....++++.+
T Consensus 177 ~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~------~~-~~~~~~~~~~ 249 (276)
T 3no2_A 177 DCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDRE------AG-KGKHPQLVEI 249 (276)
T ss_dssp CEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTT------GG-GSCCCSEEEE
T ss_pred CEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCcccc------cc-ccCCceEEEE
Confidence 9999988775 8999999654 333432 34555788899999999999999996432100 00 0135688888
Q ss_pred eCCCCcEEEec---CCCCCcceeEEC
Q 039124 237 DPPTKSNSYCV---RWLGFSKWSTII 259 (259)
Q Consensus 237 dp~tg~~~vl~---~~L~~pNGval~ 259 (259)
|++ |++.--. ..+...++||-|
T Consensus 250 ~~~-g~~~W~~~~~~~~~~~~~~~~~ 274 (276)
T 3no2_A 250 DSE-GKVVWQLNDKVKFGMISTICPI 274 (276)
T ss_dssp CTT-SBEEEEECCTTTSCCCCEEEEE
T ss_pred CCC-CCEEEEecCcccccceeeeeec
Confidence 885 6654222 235566666643
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.5e-06 Score=77.00 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=92.8
Q ss_pred CCCCceeEEEcCCCCEEEEEc-CCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 78 EVFGPESLEFDGLGRGPYTGL-ADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~-~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
.-.+|.+++|+++|+.+|+.. .+++|..|+.+.......... . ........|.+++|++
T Consensus 209 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~--------~------------~~~~~~~~~~~i~~sp 268 (361)
T 3scy_A 209 PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTV--------A------------ADTVNAQGSGDIHLSP 268 (361)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEE--------E------------SCSSCCCCEEEEEECT
T ss_pred CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEE--------e------------cCCCCCCCcccEEECC
Confidence 356899999999999777766 688998888654422221110 0 0011234578999999
Q ss_pred CCCc-EEEEeCC-Cc---eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCC
Q 039124 157 DTGD-LYIADAY-YG---LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGEST 230 (259)
Q Consensus 157 ~~G~-L~VaD~~-~G---l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~ 230 (259)
+ |+ ||+++.. .+ ++.++++++..+.+.....| ..|.++++++||+ ||+++.... .
T Consensus 269 d-g~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g---~~~~~~~~spdg~~l~~~~~~~~---------------~ 329 (361)
T 3scy_A 269 D-GKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTG---IHPRNFIITPNGKYLLVACRDTN---------------V 329 (361)
T ss_dssp T-SSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECS---SCCCEEEECTTSCEEEEEETTTT---------------E
T ss_pred C-CCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCC---CCCceEEECCCCCEEEEEECCCC---------------C
Confidence 5 75 7788876 44 55566667765554432112 4688999999998 888875321 1
Q ss_pred ceEEEEeCCCCcEEEecCCCCCcceeE
Q 039124 231 GRLLRYDPPTKSNSYCVRWLGFSKWST 257 (259)
Q Consensus 231 GrL~rydp~tg~~~vl~~~L~~pNGva 257 (259)
=++|++|+++|+.+.+...+..+.-+|
T Consensus 330 v~v~~~d~~~g~~~~~~~~~~~~~p~~ 356 (361)
T 3scy_A 330 IQIFERDQATGLLTDIKKDIKVDKPVC 356 (361)
T ss_dssp EEEEEECTTTCCEEECSCCEECSSEEE
T ss_pred EEEEEEECCCCcEeecceeeeCCCCeE
Confidence 257889999999988876665544444
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.1e-06 Score=74.93 Aligned_cols=135 Identities=13% Similarity=0.097 Sum_probs=89.9
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
..|.+++++++|+.+|+...++.|+.|+........ ... . ........|.+++++++++
T Consensus 185 ~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~-~~~-------~-------------~~~~~~~~~~~~~~s~dg~ 243 (353)
T 3vgz_A 185 KMSTGLALDSEGKRLYTTNADGELITIDTADNKILS-RKK-------L-------------LDDGKEHFFINISLDTARQ 243 (353)
T ss_dssp TTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEE-EEE-------C-------------CCSSSCCCEEEEEEETTTT
T ss_pred CccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEE-EEE-------c-------------CCCCCCcccceEEECCCCC
Confidence 458999999999999999999999999987652211 110 0 0011234578999999634
Q ss_pred cEEEEeCCC-ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEEEEe
Q 039124 160 DLYIADAYY-GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLLRYD 237 (259)
Q Consensus 160 ~L~VaD~~~-Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~ryd 237 (259)
.||+++... .|..+|.++++....... + .+.++++++||+ +|+++.. .++|..+|
T Consensus 244 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~----~~~~~~~s~dg~~l~v~~~~-----------------~~~v~~~d 300 (353)
T 3vgz_A 244 RAFITDSKAAEVLVVDTRNGNILAKVAA--P----ESLAVLFNPARNEAYVTHRQ-----------------AGKVSVID 300 (353)
T ss_dssp EEEEEESSSSEEEEEETTTCCEEEEEEC--S----SCCCEEEETTTTEEEEEETT-----------------TTEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcEEEEEEc--C----CCceEEECCCCCEEEEEECC-----------------CCeEEEEE
Confidence 589998774 488899988764333321 1 246899999998 8998753 24677777
Q ss_pred CCCCcEEEecCCCCCcceeEE
Q 039124 238 PPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 238 p~tg~~~vl~~~L~~pNGval 258 (259)
..+++....+..-..|+++++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~ 321 (353)
T 3vgz_A 301 AKSYKVVKTFDTPTHPNSLAL 321 (353)
T ss_dssp TTTTEEEEEEECCSEEEEEEE
T ss_pred CCCCeEEEEEecCCCCCeEEE
Confidence 776665544433334555543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=5.6e-07 Score=80.07 Aligned_cols=112 Identities=17% Similarity=0.120 Sum_probs=75.3
Q ss_pred CCceeEEEcCCCCEEEEEcC------CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEE
Q 039124 80 FGPESLEFDGLGRGPYTGLA------DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLR 153 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~------~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~ 153 (259)
..+.++++|++|++|+++.. .+.|++++ ++. ...+. .....|.|++
T Consensus 134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~-~~~~~--------------------------~~~~~~~~i~ 185 (326)
T 2ghs_A 134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGK-VTKLF--------------------------ADISIPNSIC 185 (326)
T ss_dssp EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTE-EEEEE--------------------------EEESSEEEEE
T ss_pred CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCc-EEEee--------------------------CCCcccCCeE
Confidence 35789999999996555542 47899998 543 22210 1123588999
Q ss_pred EeCCCC-cEEEEeCCC-ceEEEECC--CC-eE---EEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeee
Q 039124 154 FNKDTG-DLYIADAYY-GLLVVGSK--GG-LA---TPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILL 225 (259)
Q Consensus 154 ~d~~~G-~L~VaD~~~-Gl~~v~~~--gg-~~---~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~ 225 (259)
++++ | .||++|... .|++++.+ +| .. +.+.. ..+ ....|+++++|++|++|+++..
T Consensus 186 ~s~d-g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~-~~~-~~~~p~gi~~d~~G~lwva~~~------------- 249 (326)
T 2ghs_A 186 FSPD-GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID-STG-IKGGMDGSVCDAEGHIWNARWG------------- 249 (326)
T ss_dssp ECTT-SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE-CTT-SSSEEEEEEECTTSCEEEEEET-------------
T ss_pred EcCC-CCEEEEEECCCCEEEEEEcccccCCcccCceEEEE-CCC-CCCCCCeeEECCCCCEEEEEeC-------------
Confidence 9995 6 589998764 58888865 55 32 23322 221 1246899999999999998742
Q ss_pred ccCCCceEEEEeCC
Q 039124 226 EGESTGRLLRYDPP 239 (259)
Q Consensus 226 e~~~~GrL~rydp~ 239 (259)
.++|++||++
T Consensus 250 ----~~~v~~~d~~ 259 (326)
T 2ghs_A 250 ----EGAVDRYDTD 259 (326)
T ss_dssp ----TTEEEEECTT
T ss_pred ----CCEEEEECCC
Confidence 2478888885
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-07 Score=91.74 Aligned_cols=109 Identities=14% Similarity=0.077 Sum_probs=78.1
Q ss_pred CcCCCcceEEEeCCCCcEEEEeCC----------------------CceEEEECCCCe-------EEEeee--c------
Q 039124 144 KWCGRPLGLRFNKDTGDLYIADAY----------------------YGLLVVGSKGGL-------ATPLAT--Q------ 186 (259)
Q Consensus 144 ~~~grPlGl~~d~~~G~L~VaD~~----------------------~Gl~~v~~~gg~-------~~~l~~--~------ 186 (259)
..+.||-++.+++.+|.+|++-.. .+|+++.++++. .+.++. .
T Consensus 381 T~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~ 460 (592)
T 4a9v_A 381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG 460 (592)
T ss_dssp CCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred ccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccc
Confidence 456799999999878999998321 238999765431 233321 1
Q ss_pred ---------CCCCCccccccEEEcCCCcEEE-ecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEEecCCC--CCcc
Q 039124 187 ---------AGGKPILFANDLDVHKNGSIFF-TDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWL--GFSK 254 (259)
Q Consensus 187 ---------~~g~pl~~~Ndl~vd~dG~Iyf-TDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L--~~pN 254 (259)
.++.+|+.||||++|++|+||| ||.+.. .. ..++.....++|+++|.+|+++.++.+. .-+|
T Consensus 461 ~~~~g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~--~~----g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpn 534 (592)
T 4a9v_A 461 TPKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSS--NA----GDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVT 534 (592)
T ss_dssp SGGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCC--CS----GGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEE
T ss_pred ccccCccCccccCccCCCCceEECCCCCEEEEeCCCcC--cc----ccccccCCceEEEEeCCCCeEEEEEeCCCCcccc
Confidence 0134799999999999999999 998742 11 1123345568999999999999998764 5689
Q ss_pred eeEE
Q 039124 255 WSTI 258 (259)
Q Consensus 255 Gval 258 (259)
|++|
T Consensus 535 Giaf 538 (592)
T 4a9v_A 535 GISF 538 (592)
T ss_dssp EEEE
T ss_pred CCEE
Confidence 9997
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=98.55 E-value=2.9e-07 Score=87.23 Aligned_cols=171 Identities=13% Similarity=0.065 Sum_probs=102.2
Q ss_pred CeEEccCCCCCceeEEEcCCCC-EEEEEcCCCeEEEEeCCCccE-EEEEEeecCccccccccCccccccccccccCcCCC
Q 039124 71 GKLEFVDEVFGPESLEFDGLGR-GPYTGLADGRIVRWMGENVGW-ETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGR 148 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~~G~-~~yt~~~~G~I~ri~~~~~~~-~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gr 148 (259)
++.+..+ |..|-++++.++|. .+|+.-..|+|++++.++... ..++-. .+....+ .....-+.
T Consensus 6 v~~va~g-L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~----~~~~~~g----------~~~~~e~G 70 (463)
T 2wg3_C 6 IQEVVSG-LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDI----HKLVQSG----------IKGGDERG 70 (463)
T ss_dssp EEEEEEE-ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEEC----TTTBCCC----------CSSSCCCS
T ss_pred EEEeccC-CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCC----cceeccC----------ccccCCCc
Confidence 3455554 89999999999984 366666789999998765310 011100 0000000 00011345
Q ss_pred cceEEEeCC---CCcEEEEeCC-------------CceEEEECCC--------CeEEEeeecCCCCCccccccEEEcCCC
Q 039124 149 PLGLRFNKD---TGDLYIADAY-------------YGLLVVGSKG--------GLATPLATQAGGKPILFANDLDVHKNG 204 (259)
Q Consensus 149 PlGl~~d~~---~G~L~VaD~~-------------~Gl~~v~~~g--------g~~~~l~~~~~g~pl~~~Ndl~vd~dG 204 (259)
++||+++++ ++.|||+-+. ..|.++.... ...++|.+......-.+...|++++||
T Consensus 71 llgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG 150 (463)
T 2wg3_C 71 LLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDG 150 (463)
T ss_dssp EEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTS
T ss_pred ceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCC
Confidence 799999983 4899997542 2355554321 112444432212235678899999999
Q ss_pred cEEEecCCCCCCc--ccceeeeeccCCCceEEEEeCCCC--------------------cEEEecCCCCCcceeEE
Q 039124 205 SIFFTDTSKRYNR--VDHFFILLEGESTGRLLRYDPPTK--------------------SNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 205 ~IyfTDss~~~~~--~~~~~~~~e~~~~GrL~rydp~tg--------------------~~~vl~~~L~~pNGval 258 (259)
.||+|-....... ++..+. .....|.++|+|++++ ..++.+-|+.-|.|++|
T Consensus 151 ~LYv~~Gd~~~~~~~~~~~q~--~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~ 224 (463)
T 2wg3_C 151 FLYIILGDGMITLDDMEEMDG--LSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAV 224 (463)
T ss_dssp CEEEEECCTTCCHHHHHHCTT--CCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEE
T ss_pred cEEEEeCCCCCCCCccccccC--cCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEE
Confidence 9999865432110 000111 1356799999999853 34788899999999886
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.5e-06 Score=73.39 Aligned_cols=145 Identities=18% Similarity=0.247 Sum_probs=89.8
Q ss_pred CCCceeEEEcCCCCEEEE-EcCCCeEEEEeCC--CccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 79 VFGPESLEFDGLGRGPYT-GLADGRIVRWMGE--NVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt-~~~~G~I~ri~~~--~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
-.+|.+++|+++|+.+|+ +..+++|..|+.+ ...+........ . .........|.+++|+
T Consensus 186 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~------~-----------~~~~~~~~~~~~i~~s 248 (347)
T 3hfq_A 186 GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT------I-----------PADYTAHNGAAAIRLS 248 (347)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES------S-----------CTTCCSCCEEEEEEEC
T ss_pred CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee------c-----------CCCCCCCCcceeEEEC
Confidence 358999999999995555 5667887766544 232222111000 0 0000112458899999
Q ss_pred CCCCc-EEEEeCCCc-eEEEECC-CCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCc
Q 039124 156 KDTGD-LYIADAYYG-LLVVGSK-GGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTG 231 (259)
Q Consensus 156 ~~~G~-L~VaD~~~G-l~~v~~~-gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~G 231 (259)
++ |+ |||++...+ |..++.+ +|..+.+..... .-..|.++++++||+ ||+++.... .=
T Consensus 249 pd-G~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~---------------~v 310 (347)
T 3hfq_A 249 HD-GHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST--EGDFPRDFDLDPTEAFVVVVNQNTD---------------NA 310 (347)
T ss_dssp TT-SCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC--SSSCCCEEEECTTSSEEEEEETTTT---------------EE
T ss_pred CC-CCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec--CCCCcCeEEECCCCCEEEEEEcCCC---------------cE
Confidence 95 75 788876554 5455543 233444432111 123589999999997 888876421 22
Q ss_pred eEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 232 RLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 232 rL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
++|++|+++|+.+.+...+..|.+.|+
T Consensus 311 ~v~~~d~~tg~l~~~~~~~~~p~p~~~ 337 (347)
T 3hfq_A 311 TLYARDLTSGKLSLLQKDVTVPEGVCV 337 (347)
T ss_dssp EEEEECTTTCCEEEEEEEEECTTEEEE
T ss_pred EEEEEeCCCCeEEecccceecCCCcEE
Confidence 577779999999988877777777664
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.44 E-value=9.4e-06 Score=70.92 Aligned_cols=133 Identities=11% Similarity=-0.034 Sum_probs=88.7
Q ss_pred ceeEEEcCCCCEEEEEcC-CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 82 PESLEFDGLGRGPYTGLA-DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~-~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
..++.+.++|+.++++.. +++|+.+++++.....+.... . .......|.++++++ +|+
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~----~----------------~~~~~~~~~~v~~~~-~G~ 137 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFET----G----------------IERPHAQFRQINKNK-KGN 137 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECC----S----------------CSSGGGSCSCCEECT-TSC
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccC----C----------------CCcccccccCceECC-CCC
Confidence 346778889998888887 899999998876322332110 0 001112467888998 599
Q ss_pred EEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCC
Q 039124 161 LYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPP 239 (259)
Q Consensus 161 L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~ 239 (259)
++|++...+ |+.+|++|..+..+.. . ..|.++.+.++|+++++++. .+||+.+|++
T Consensus 138 ~lv~~~~~~~v~~~d~~G~~~w~~~~--~----~~~~~~~~~~~g~~~v~~~~-----------------~~~v~~~d~~ 194 (276)
T 3no2_A 138 YLVPLFATSEVREIAPNGQLLNSVKL--S----GTPFSSAFLDNGDCLVACGD-----------------AHCFVQLNLE 194 (276)
T ss_dssp EEEEETTTTEEEEECTTSCEEEEEEC--S----SCCCEEEECTTSCEEEECBT-----------------TSEEEEECTT
T ss_pred EEEEecCCCEEEEECCCCCEEEEEEC--C----CCccceeEcCCCCEEEEeCC-----------------CCeEEEEeCc
Confidence 999998766 8889999554443322 2 24678899999999998864 2478888888
Q ss_pred CCcEEEec-----C--CCCCcceeEE
Q 039124 240 TKSNSYCV-----R--WLGFSKWSTI 258 (259)
Q Consensus 240 tg~~~vl~-----~--~L~~pNGval 258 (259)
||+..--. + .+.++.|+++
T Consensus 195 tG~~~w~~~~~~~~~~~l~~~~~~~~ 220 (276)
T 3no2_A 195 SNRIVRRVNANDIEGVQLFFVAQLFP 220 (276)
T ss_dssp TCCEEEEEEGGGSBSCCCSEEEEEEE
T ss_pred CCcEEEEecCCCCCCccccccccceE
Confidence 77663222 1 2555666654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=4e-06 Score=76.83 Aligned_cols=132 Identities=8% Similarity=0.060 Sum_probs=83.3
Q ss_pred CCceeEEEcC--CCC-EEEEEcCC---C--eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcce
Q 039124 80 FGPESLEFDG--LGR-GPYTGLAD---G--RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLG 151 (259)
Q Consensus 80 ~gPE~ia~D~--~G~-~~yt~~~~---G--~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlG 151 (259)
..|.++.+.+ +|. .+|+..+. . +|++++.++.. .++... +. .....+|+.
T Consensus 112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~-~~~~~~--------------------~~-g~~~~~pND 169 (355)
T 3sre_A 112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS-LLHLKT--------------------IR-HKLLPSVND 169 (355)
T ss_dssp CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTE-EEEEEE--------------------EC-CTTCSSEEE
T ss_pred eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCE-EEEEec--------------------cc-cCCCCCCce
Confidence 5899999855 453 24444332 1 37788877652 222111 11 134668999
Q ss_pred EEEeCCCCcEEEEeCC------------------CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCC
Q 039124 152 LRFNKDTGDLYIADAY------------------YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTS 212 (259)
Q Consensus 152 l~~d~~~G~L~VaD~~------------------~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss 212 (259)
++++++ |.+||.+.. ..|+++++. +++.+++ .+.+||++++++||+ +|++|+.
T Consensus 170 ~~v~~~-G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~-----~l~~pNGia~spDg~~lYvadt~ 241 (355)
T 3sre_A 170 IVAVGP-EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAE-----GFDFANGINISPDGKYVYIAELL 241 (355)
T ss_dssp EEEEET-TEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEE-----EESSEEEEEECTTSSEEEEEEGG
T ss_pred EEEeCC-CCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeec-----CCcccCcceECCCCCEEEEEeCC
Confidence 999994 999998651 138999884 4565553 367999999999995 9999986
Q ss_pred CCCCcccceeeeeccCCCceEEEEeCC-CCcEE--EecCCCCCcceeEE
Q 039124 213 KRYNRVDHFFILLEGESTGRLLRYDPP-TKSNS--YCVRWLGFSKWSTI 258 (259)
Q Consensus 213 ~~~~~~~~~~~~~e~~~~GrL~rydp~-tg~~~--vl~~~L~~pNGval 258 (259)
. +++++|+.+ +|+.. .+.+--.+|+|+++
T Consensus 242 ~-----------------~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~v 273 (355)
T 3sre_A 242 A-----------------HKIHVYEKHANWTLTPLRVLSFDTLVDNISV 273 (355)
T ss_dssp G-----------------TEEEEEEECTTSCEEEEEEEECSSEEEEEEE
T ss_pred C-----------------CeEEEEEECCCCcEecCEEEeCCCCCceEEE
Confidence 4 367777643 23332 12222356777764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.3e-05 Score=68.81 Aligned_cols=118 Identities=12% Similarity=0.008 Sum_probs=72.3
Q ss_pred CCCceeEEEcCCCCEEEEEc-CCCeEEEEeCC-CccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 79 VFGPESLEFDGLGRGPYTGL-ADGRIVRWMGE-NVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~-~~G~I~ri~~~-~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
...|.+++++++|+.+|+.. .++.|..|+.+ +............. .++ ........|.++++++
T Consensus 85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-----~~p---------~~~~~~~~~~~~~~sp 150 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSG-----HGP---------RPEQDGSHIHYTDLTP 150 (347)
T ss_dssp SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCC-----CCS---------STTCSSCCEEEEEECT
T ss_pred CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCC-----CCC---------CccccCCCceEEEECC
Confidence 56899999999999777766 67888777653 21122211110000 000 0011234578999999
Q ss_pred CCCcEEEEeCCCc-eEEEECC-CCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCC
Q 039124 157 DTGDLYIADAYYG-LLVVGSK-GGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTS 212 (259)
Q Consensus 157 ~~G~L~VaD~~~G-l~~v~~~-gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss 212 (259)
+ |++|+++...+ +..++.+ ++....+.. .....-..|+++++++||+ +|+++..
T Consensus 151 d-g~l~v~~~~~~~v~~~~~~~~g~~~~~~~-~~~~~g~~p~~~~~spdg~~l~v~~~~ 207 (347)
T 3hfq_A 151 D-NRLAVIDLGSDKVYVYNVSDAGQLSEQSV-LTMEAGFGPRHLVFSPDGQYAFLAGEL 207 (347)
T ss_dssp T-SCEEEEETTTTEEEEEEECTTSCEEEEEE-EECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred C-CcEEEEeCCCCEEEEEEECCCCcEEEeee-EEcCCCCCCceEEECCCCCEEEEEeCC
Confidence 5 88999998766 6666655 454444332 1111223688999999998 8998764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.6e-05 Score=67.64 Aligned_cols=138 Identities=17% Similarity=0.178 Sum_probs=91.0
Q ss_pred CCCceeEEEcCCCCEEEE-EcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 79 VFGPESLEFDGLGRGPYT-GLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt-~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
-.+|.+++|+++|+.+|+ +..++.|..|+......... + ........|.+++|+++
T Consensus 175 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~----------~-------------~~~~~~~~~~~~~~spd 231 (331)
T 3u4y_A 175 GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITL----------L-------------NAVGTNNLPGTIVVSRD 231 (331)
T ss_dssp SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEE----------E-------------EEEECSSCCCCEEECTT
T ss_pred CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccce----------e-------------eeccCCCCCceEEECCC
Confidence 467999999999985554 55688999999765422000 0 00112356889999995
Q ss_pred CCc-EEEEeCCCc-eEEEECCCCeEEEeee---c--CCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCC
Q 039124 158 TGD-LYIADAYYG-LLVVGSKGGLATPLAT---Q--AGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGES 229 (259)
Q Consensus 158 ~G~-L~VaD~~~G-l~~v~~~gg~~~~l~~---~--~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~ 229 (259)
|+ ||+++...+ |..+|.++++.+.+.. . ....+....+++++++||+ +|++...
T Consensus 232 -g~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~----------------- 293 (331)
T 3u4y_A 232 -GSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI----------------- 293 (331)
T ss_dssp -SSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT-----------------
T ss_pred -CCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC-----------------
Confidence 76 788876443 8889999887644432 1 2234445568899999997 7888653
Q ss_pred CceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 230 TGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 230 ~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
.|.|..+|..++++.. ..++....|+++
T Consensus 294 ~~~v~v~d~~~~~~~~-~~~~~~~g~~~~ 321 (331)
T 3u4y_A 294 SRELKVFTISGKVVGY-VAGIEANGGIAI 321 (331)
T ss_dssp TTEEEEEETTSCEEEE-CTTCCCBSCEEE
T ss_pred CCcEEEEEecCCcccc-eecccccCCeEE
Confidence 3578888887554443 455655555554
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.7e-05 Score=69.46 Aligned_cols=123 Identities=17% Similarity=0.238 Sum_probs=77.9
Q ss_pred CCceeEEEcCCCCEEEEEcCC-C-eEEEEeC--CCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 80 FGPESLEFDGLGRGPYTGLAD-G-RIVRWMG--ENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~-G-~I~ri~~--~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.+.|++|+|++++.+|+.... - .|++++. .+...... . .+. +........+-||++|
T Consensus 121 ~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~---~----~~~------------~~~~~~~~d~S~l~~d 181 (255)
T 3qqz_A 121 CGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHIS---K----DKA------------LQRQFTLDDVSGAEFN 181 (255)
T ss_dssp SCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEE---E----CHH------------HHHTCCSSCCCEEEEE
T ss_pred CCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeee---c----chh------------hccccccCCceeEEEc
Confidence 455999999988778887653 3 6888873 11111110 0 000 0001123457899999
Q ss_pred CCCCcEEEEeCCC-ceEEEECCCCeEEEeeecCCC-----CCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCC
Q 039124 156 KDTGDLYIADAYY-GLLVVGSKGGLATPLATQAGG-----KPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGES 229 (259)
Q Consensus 156 ~~~G~L~VaD~~~-Gl~~v~~~gg~~~~l~~~~~g-----~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~ 229 (259)
+.+|+|||..... -|+.+|.++..+..+. -..| +.+..|.||++|++|++|++. ++
T Consensus 182 p~tg~lliLS~~s~~L~~~d~~g~~~~~~~-L~~g~~~l~~~~~qpEGia~d~~G~lyIvs-----------------E~ 243 (255)
T 3qqz_A 182 QQKNTLLVLSHESRALQEVTLVGEVIGEMS-LTKGSRGLSHNIKQAEGVAMDASGNIYIVS-----------------EP 243 (255)
T ss_dssp TTTTEEEEEETTTTEEEEECTTCCEEEEEE-CSTTGGGCSSCCCSEEEEEECTTCCEEEEE-----------------TT
T ss_pred CCCCeEEEEECCCCeEEEEcCCCCEEEEEE-cCCccCCcccccCCCCeeEECCCCCEEEEc-----------------CC
Confidence 9999999975554 4889999977444332 1122 235689999999999999983 22
Q ss_pred CceEEEEeCCC
Q 039124 230 TGRLLRYDPPT 240 (259)
Q Consensus 230 ~GrL~rydp~t 240 (259)
+ .+|+|.+..
T Consensus 244 n-~~y~f~~~~ 253 (255)
T 3qqz_A 244 N-RFYRFTPQS 253 (255)
T ss_dssp T-EEEEEEC--
T ss_pred c-eEEEEEecC
Confidence 2 788888753
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=5.5e-06 Score=75.32 Aligned_cols=112 Identities=18% Similarity=0.168 Sum_probs=73.0
Q ss_pred CCCCceeEEEcCC---CCEEEEEcC----C----CeEEEEeCCCc--cEEEEEEeecCccccccccCccccccccccccC
Q 039124 78 EVFGPESLEFDGL---GRGPYTGLA----D----GRIVRWMGENV--GWETFAIVTSNWSEKLCARGVDSTTAKQWKHEK 144 (259)
Q Consensus 78 ~l~gPE~ia~D~~---G~~~yt~~~----~----G~I~ri~~~~~--~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~ 144 (259)
...+|.+|+++++ +..+|+... + .+|+|++.++. ..... +.+.++ +. ..
T Consensus 71 g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~--------~~l~~~---------~~-~~ 132 (354)
T 3a9g_A 71 GEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEV--------KTLIDG---------IP-GA 132 (354)
T ss_dssp TTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEE--------EEEEEE---------EE-CC
T ss_pred CCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCcc--------EEEEEc---------CC-CC
Confidence 3578999999997 444666543 3 78999987653 11110 001100 00 11
Q ss_pred cCCCcceEEEeCCCCcEEEEeCC-------------C-ceEEEECCCC--------eEEEeeecCCCCCccccccEEEcC
Q 039124 145 WCGRPLGLRFNKDTGDLYIADAY-------------Y-GLLVVGSKGG--------LATPLATQAGGKPILFANDLDVHK 202 (259)
Q Consensus 145 ~~grPlGl~~d~~~G~L~VaD~~-------------~-Gl~~v~~~gg--------~~~~l~~~~~g~pl~~~Ndl~vd~ 202 (259)
....|.+|+|+++ |.|||++.. . .|+++++++. ..++++. .++.|+++++|+
T Consensus 133 ~~h~~~~l~~~pD-G~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~-----G~rnp~Gla~d~ 206 (354)
T 3a9g_A 133 YIHNGGRIRFGPD-GMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSY-----GHRNPQGIDWHR 206 (354)
T ss_dssp SSCCCCCEEECTT-SCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEE-----CCSCCCEEEECT
T ss_pred CCcCCceEEECCC-CcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEE-----ccCCcceEEEeC
Confidence 2335789999994 999999642 2 3999999875 2234432 356899999999
Q ss_pred -CCcEEEecCCC
Q 039124 203 -NGSIFFTDTSK 213 (259)
Q Consensus 203 -dG~IyfTDss~ 213 (259)
+|++|++|...
T Consensus 207 ~~g~l~v~d~g~ 218 (354)
T 3a9g_A 207 ASGVMVATEHGP 218 (354)
T ss_dssp TTCCEEEEECCS
T ss_pred CCCCEEEEecCC
Confidence 89999999875
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.6e-06 Score=76.26 Aligned_cols=114 Identities=14% Similarity=0.054 Sum_probs=72.6
Q ss_pred CCCCceeEEEcCC---CCEEEEEcC-C-----CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccc-cCcCC
Q 039124 78 EVFGPESLEFDGL---GRGPYTGLA-D-----GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKH-EKWCG 147 (259)
Q Consensus 78 ~l~gPE~ia~D~~---G~~~yt~~~-~-----G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~g 147 (259)
...+|.+++++++ ++.+|+... . ++|+|++.++...... +.+.++ +.. .....
T Consensus 73 g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~--------~~l~~~---------~p~~~~~~h 135 (352)
T 2ism_A 73 GESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLD--------RVVLDG---------IPARPHGLH 135 (352)
T ss_dssp TTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEE--------EEEEEE---------ECCCTTCCC
T ss_pred CCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCce--------EEEEEe---------CCCCCCCCc
Confidence 4679999999997 444665543 2 7899998765322110 001100 000 11234
Q ss_pred CcceEEEeCCCCcEEEEeCC--------------CceEEEECCCC-------------eEEEeeecCCCCCccccccEEE
Q 039124 148 RPLGLRFNKDTGDLYIADAY--------------YGLLVVGSKGG-------------LATPLATQAGGKPILFANDLDV 200 (259)
Q Consensus 148 rPlGl~~d~~~G~L~VaD~~--------------~Gl~~v~~~gg-------------~~~~l~~~~~g~pl~~~Ndl~v 200 (259)
.|.+|+|+++ |.|||++.. ..|+++++++. ..+.++. .++.|+++++
T Consensus 136 ~~~~l~~~pd-G~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~-----G~rnp~g~a~ 209 (352)
T 2ism_A 136 SGGRIAFGPD-GMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSL-----GHRNPQGLAW 209 (352)
T ss_dssp CCCCEEECTT-SCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEE-----CCSEECCCEE
T ss_pred CCceEEECCC-CCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEE-----cCCCcccEEE
Confidence 5789999994 999999742 13899998862 1222222 2567999999
Q ss_pred cC-CCcEEEecCCCC
Q 039124 201 HK-NGSIFFTDTSKR 214 (259)
Q Consensus 201 d~-dG~IyfTDss~~ 214 (259)
++ +|++|++|....
T Consensus 210 d~~~g~l~v~d~g~~ 224 (352)
T 2ism_A 210 HPKTGELFSSEHGPS 224 (352)
T ss_dssp CTTTCCEEEEEECC-
T ss_pred ECCCCCEEEEEcCCC
Confidence 99 899999998754
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00015 Score=62.40 Aligned_cols=145 Identities=12% Similarity=0.102 Sum_probs=87.1
Q ss_pred CCCceeEEEcCCCCEEEE-EcCCCeEEEEeCCC--ccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 79 VFGPESLEFDGLGRGPYT-GLADGRIVRWMGEN--VGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt-~~~~G~I~ri~~~~--~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
-..|.+++|+++|+.+|+ +..++.|..|+.+. ..+....... ... ........|.+++|+
T Consensus 177 ~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~------~~~-----------~~~~~~~~~~~i~~s 239 (343)
T 1ri6_A 177 GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD------MMP-----------ENFSDTRWAADIHIT 239 (343)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEE------CSC-----------TTCCSCCCEEEEEEC
T ss_pred CCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeecc------ccC-----------ccccccCCccceEEC
Confidence 358899999999985654 55789999888743 2222111000 000 000112356789999
Q ss_pred CCCCcEEEEeCCCc-eEEEECC--CCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCc
Q 039124 156 KDTGDLYIADAYYG-LLVVGSK--GGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTG 231 (259)
Q Consensus 156 ~~~G~L~VaD~~~G-l~~v~~~--gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~G 231 (259)
+++..||+++...+ +..++.+ ++..+.+.....+ ..+.++++++||+ +|+++... ..=
T Consensus 240 ~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~---------------~~v 301 (343)
T 1ri6_A 240 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE---TQPRGFNVDHSGKYLIAAGQKS---------------HHI 301 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS---SSCCCEEECTTSSEEEEECTTT---------------CEE
T ss_pred CCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC---CccceEEECCCCCEEEEecCCC---------------CeE
Confidence 95335777876555 5555655 5554444322111 1388999999998 78877532 123
Q ss_pred eEEEEeCCCCcEEEecC--CCCCcceeEE
Q 039124 232 RLLRYDPPTKSNSYCVR--WLGFSKWSTI 258 (259)
Q Consensus 232 rL~rydp~tg~~~vl~~--~L~~pNGval 258 (259)
++|++|+++|+.+.+.. .-..|+++++
T Consensus 302 ~v~~~d~~~g~~~~~~~~~~g~~p~~i~~ 330 (343)
T 1ri6_A 302 SVYEIVGEQGLLHEKGRYAVGQGPMWVVV 330 (343)
T ss_dssp EEEEEETTTTEEEEEEEEECSSSCCEEEE
T ss_pred EEEEEcCCCceeeEccccccCCCCeeEEE
Confidence 57778998887665532 2256888876
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.26 E-value=4.3e-05 Score=67.56 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=68.1
Q ss_pred CceeEEEcCCCCEEE-EEcCCCeEEEEeCCCcc-------EEEEEEeecCccccccccCccccccccccccCcCCCcceE
Q 039124 81 GPESLEFDGLGRGPY-TGLADGRIVRWMGENVG-------WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGL 152 (259)
Q Consensus 81 gPE~ia~D~~G~~~y-t~~~~G~I~ri~~~~~~-------~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl 152 (259)
.|.+++|+++|+.+| ++..+++|..|+.+... +....... . ........|.++
T Consensus 156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~------~-------------~~~~~~~~~~~~ 216 (361)
T 3scy_A 156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE------A-------------FKVAPGSGPRHL 216 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE------E-------------EECCTTCCEEEE
T ss_pred cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc------c-------------eecCCCCCCeEE
Confidence 457899999998555 45567888777544321 11100000 0 011224568899
Q ss_pred EEeCCCCc-EEEEeCCCc-eEEEECCCCeEEEeeec-CCCCCccccccEEEcCCCc-EEEecCC
Q 039124 153 RFNKDTGD-LYIADAYYG-LLVVGSKGGLATPLATQ-AGGKPILFANDLDVHKNGS-IFFTDTS 212 (259)
Q Consensus 153 ~~d~~~G~-L~VaD~~~G-l~~v~~~gg~~~~l~~~-~~g~pl~~~Ndl~vd~dG~-IyfTDss 212 (259)
+|+++ |+ ||+++...+ |..++.+++..+.+... ........++++++++||+ +|+++..
T Consensus 217 ~~spd-g~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~ 279 (361)
T 3scy_A 217 IFNSD-GKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL 279 (361)
T ss_dssp EECTT-SSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred EEcCC-CCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence 99995 75 888885444 66667667765444321 1111235678999999998 8888765
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.9e-05 Score=67.50 Aligned_cols=135 Identities=11% Similarity=-0.044 Sum_probs=83.1
Q ss_pred EEccCCCCCceeEEEcCCCCEEEEEcC---CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 73 LEFVDEVFGPESLEFDGLGRGPYTGLA---DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 73 ~l~~~~l~gPE~ia~D~~G~~~yt~~~---~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
.+-.+.-..|++++++++|. +|++.. +++|.+++........ . ... ...-.+
T Consensus 14 ~~p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~-~----------------------i~l-~~~~fg 68 (266)
T 2iwa_A 14 EFPHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVEN-I----------------------HKM-DDSYFG 68 (266)
T ss_dssp EEECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEE-E----------------------EEC-CTTCCE
T ss_pred EEECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEE-E----------------------Eec-CCCcce
Confidence 34445456789999998875 666542 5789999998763221 0 000 111234
Q ss_pred ceEEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCC-cEEEecCCCCCCcccceeeeecc
Q 039124 150 LGLRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNG-SIFFTDTSKRYNRVDHFFILLEG 227 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG-~IyfTDss~~~~~~~~~~~~~e~ 227 (259)
.|++++. +.||+++...+ ++.+|+++.+. +.+-.-| .+.+..+.+|| ++|+||.
T Consensus 69 eGi~~~g--~~lyv~t~~~~~v~viD~~t~~v--~~~i~~g----~~~g~glt~Dg~~l~vs~g---------------- 124 (266)
T 2iwa_A 69 EGLTLLN--EKLYQVVWLKNIGFIYDRRTLSN--IKNFTHQ----MKDGWGLATDGKILYGSDG---------------- 124 (266)
T ss_dssp EEEEEET--TEEEEEETTCSEEEEEETTTTEE--EEEEECC----SSSCCEEEECSSSEEEECS----------------
T ss_pred EEEEEeC--CEEEEEEecCCEEEEEECCCCcE--EEEEECC----CCCeEEEEECCCEEEEECC----------------
Confidence 5788874 69999998776 78889988742 2221111 23445566665 4999873
Q ss_pred CCCceEEEEeCCCCcEE-Eec-----CCCCCcceeEE
Q 039124 228 ESTGRLLRYDPPTKSNS-YCV-----RWLGFSKWSTI 258 (259)
Q Consensus 228 ~~~GrL~rydp~tg~~~-vl~-----~~L~~pNGval 258 (259)
+++|+.+||+|.+.. .+. ..+.++|++++
T Consensus 125 --s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~ 159 (266)
T 2iwa_A 125 --TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY 159 (266)
T ss_dssp --SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred --CCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence 247888898876533 222 13456777765
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-05 Score=77.25 Aligned_cols=124 Identities=19% Similarity=0.300 Sum_probs=78.6
Q ss_pred CCCCCceeEEEcC-CCCEEEEEcC----------------------CCeEEEEeCCCc-------cEEEEEEeecCcccc
Q 039124 77 DEVFGPESLEFDG-LGRGPYTGLA----------------------DGRIVRWMGENV-------GWETFAIVTSNWSEK 126 (259)
Q Consensus 77 ~~l~gPE~ia~D~-~G~~~yt~~~----------------------~G~I~ri~~~~~-------~~~~fa~~~~~~~~~ 126 (259)
-.+..||++++++ +|. +|+.+. .|.|+||..++. .|..|........
T Consensus 381 T~mdRpEdi~v~p~~g~-vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~-- 457 (592)
T 4a9v_A 381 TRMDRPEWIVVSPKDGQ-VYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSV-- 457 (592)
T ss_dssp CCEECEEEEEECTTTCC-EEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTT--
T ss_pred ccccCccceeEcCCCCE-EEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcc--
Confidence 3567899999998 566 565532 288999986542 2555543211000
Q ss_pred ccccC-ccccccccccccCcCCCcceEEEeCCCCcEEE-EeCCC------------ceEEEECCCCeEEEeeecCCCCCc
Q 039124 127 LCARG-VDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYI-ADAYY------------GLLVVGSKGGLATPLATQAGGKPI 192 (259)
Q Consensus 127 ~~~g~-~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~V-aD~~~------------Gl~~v~~~gg~~~~l~~~~~g~pl 192 (259)
-++. +.. ............|.+|+||++ |+||| .|..+ +++.+++++|+++.++.... .
T Consensus 458 -~~~~~~~g--~~~~~~~~~fnsPDnL~fd~~-G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~---~ 530 (592)
T 4a9v_A 458 -HAGTPKGG--SSNITPQNMFNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI---G 530 (592)
T ss_dssp -STTSGGGC--CTTCCTTTCCCCEEEEEECTT-CCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT---T
T ss_pred -cccccccC--ccCccccCccCCCCceEECCC-CCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC---C
Confidence 0000 000 000011234678999999995 99999 78642 58999998888888775322 3
Q ss_pred cccccEEEcCCCc-EEEec
Q 039124 193 LFANDLDVHKNGS-IFFTD 210 (259)
Q Consensus 193 ~~~Ndl~vd~dG~-IyfTD 210 (259)
.-+|+++++||++ +|++-
T Consensus 531 aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 531 CEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEEECTTSSEEEEEE
T ss_pred ccccCCEECCCCCEEEEEE
Confidence 4689999999997 77764
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=6.6e-05 Score=64.73 Aligned_cols=106 Identities=11% Similarity=0.113 Sum_probs=67.8
Q ss_pred CCCceeEEEcCCCCEEEEEcCC-CeEEEEeCC--CccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 79 VFGPESLEFDGLGRGPYTGLAD-GRIVRWMGE--NVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~-G~I~ri~~~--~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
...|.+++|+++|+.+|++..+ +.|..|+.+ +........ ....+.|.+++++
T Consensus 37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~s 92 (343)
T 1ri6_A 37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE------------------------SALPGSLTHISTD 92 (343)
T ss_dssp SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE------------------------EECSSCCSEEEEC
T ss_pred CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccc------------------------cccCCCCcEEEEc
Confidence 4579999999999977777665 888887654 332222100 1113478999999
Q ss_pred CCCCc-EEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecC
Q 039124 156 KDTGD-LYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDT 211 (259)
Q Consensus 156 ~~~G~-L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDs 211 (259)
++ |+ ||+++...+ |..++.+.+..........+. ..++++++++||+ +|+++.
T Consensus 93 ~d-g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~ 148 (343)
T 1ri6_A 93 HQ-GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL--DGCHSANISPDNRTLWVPAL 148 (343)
T ss_dssp TT-SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC--TTBCCCEECTTSSEEEEEEG
T ss_pred CC-CCEEEEEecCCCeEEEEECCCCccccccccccCC--CCceEEEECCCCCEEEEecC
Confidence 95 65 778876555 656665333222222223322 2589999999997 888773
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=98.17 E-value=8.8e-05 Score=64.23 Aligned_cols=104 Identities=9% Similarity=0.035 Sum_probs=66.8
Q ss_pred CCcee-EEEcCCCCEEEEEcCCC---eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 80 FGPES-LEFDGLGRGPYTGLADG---RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 80 ~gPE~-ia~D~~G~~~yt~~~~G---~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
..|.. ++++++|+.+|++..++ .|..|+.+...... .......|.+++++
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~--------------------------~~~~~~~~~~~~~s 136 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIS--------------------------TIPIPYDAVGIAIS 136 (331)
T ss_dssp SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEE--------------------------EEECCTTEEEEEEC
T ss_pred CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEE--------------------------EEECCCCccceEEC
Confidence 57888 99999999888766553 89999987652211 01123468999999
Q ss_pred CCCCc-EEEEeCC-Cc-e--EEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCC
Q 039124 156 KDTGD-LYIADAY-YG-L--LVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTS 212 (259)
Q Consensus 156 ~~~G~-L~VaD~~-~G-l--~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss 212 (259)
++ |+ ||+++.. .. + +.++.++.....-..... .-..|.++++++||+ +|+++..
T Consensus 137 pd-g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~ 196 (331)
T 3u4y_A 137 PN-GNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS--GGTRPFNITFTPDGNFAFVANLI 196 (331)
T ss_dssp TT-SSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC--SSSSEEEEEECTTSSEEEEEETT
T ss_pred CC-CCEEEEEecCCCceEEEEEECCCCcEeecCCcccc--CCCCccceEECCCCCEEEEEeCC
Confidence 95 64 9998775 34 4 444443322111011111 123589999999998 8998754
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00011 Score=66.12 Aligned_cols=144 Identities=13% Similarity=0.058 Sum_probs=94.2
Q ss_pred CCceeEEEcCCCCEEEEEc--------CCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcce
Q 039124 80 FGPESLEFDGLGRGPYTGL--------ADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLG 151 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~--------~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlG 151 (259)
..|.+++|+++|+.+|++. .+|.|..|+......... ....+.|.+
T Consensus 254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~--------------------------~~~~~~~~~ 307 (433)
T 3bws_A 254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT--------------------------IGPPGNKRH 307 (433)
T ss_dssp SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE--------------------------EEEEECEEE
T ss_pred CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee--------------------------ccCCCCcce
Confidence 4588999999998888876 478999999865521110 011235788
Q ss_pred EEEeCCCC-cEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccC
Q 039124 152 LRFNKDTG-DLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGE 228 (259)
Q Consensus 152 l~~d~~~G-~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~ 228 (259)
++++++ | .+|++....+ +..++.++++...... . ...+++++++++|+ +|++......... ..+..+.
T Consensus 308 ~~~~~~-g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~----~~~~~~~~~s~dg~~l~~~~~~~~~~~~---~~~~~g~ 378 (433)
T 3bws_A 308 IVSGNT-ENKIYVSDMCCSKIEVYDLKEKKVQKSIP-V----FDKPNTIALSPDGKYLYVSCRGPNHPTE---GYLKKGL 378 (433)
T ss_dssp EEECSS-TTEEEEEETTTTEEEEEETTTTEEEEEEE-C----SSSEEEEEECTTSSEEEEEECCCCCTTT---CTTSCCS
T ss_pred EEECCC-CCEEEEEecCCCEEEEEECCCCcEEEEec-C----CCCCCeEEEcCCCCEEEEEecCCCcccc---ccccccc
Confidence 999995 6 5888866665 7778988875443332 1 23478999999997 7777654321100 1123345
Q ss_pred CCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 229 STGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 229 ~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
..|+|+.+|..+++....+..-..++++++
T Consensus 379 ~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~ 408 (433)
T 3bws_A 379 VLGKVYVIDTTTDTVKEFWEAGNQPTGLDV 408 (433)
T ss_dssp SCCEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred cceEEEEEECCCCcEEEEecCCCCCceEEE
Confidence 578999999988876665554444555543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00015 Score=64.35 Aligned_cols=101 Identities=13% Similarity=0.159 Sum_probs=70.6
Q ss_pred CCceeEEEcCCCCEE-EEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 80 FGPESLEFDGLGRGP-YTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~-yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
..|.+++|+++|+.+ +++..++.|..|+........ . + .....+.+++++++
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~-~----------------------~---~~~~~v~~~~~spd- 84 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA-T----------------------V---PAGSSPQGVAVSPD- 84 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE-E----------------------E---ECSSSEEEEEECTT-
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEE-E----------------------E---ECCCCccceEECCC-
Confidence 468999999999866 466689999999986652211 0 0 11236889999995
Q ss_pred Cc-EEEEeCCC-ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCC
Q 039124 159 GD-LYIADAYY-GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTS 212 (259)
Q Consensus 159 G~-L~VaD~~~-Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss 212 (259)
|+ ||++.... .|..+|.++++....... + ..+++++++++|+ +|++.+.
T Consensus 85 g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~--~---~~~~~~~~s~dg~~l~~~~~~ 136 (391)
T 1l0q_A 85 GKQVYVTNMASSTLSVIDTTSNTVAGTVKT--G---KSPLGLALSPDGKKLYVTNNG 136 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEEC--S---SSEEEEEECTTSSEEEEEETT
T ss_pred CCEEEEEECCCCEEEEEECCCCeEEEEEeC--C---CCcceEEECCCCCEEEEEeCC
Confidence 55 77787664 488889998864433322 1 2468999999997 7788653
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00015 Score=64.73 Aligned_cols=112 Identities=13% Similarity=0.050 Sum_probs=68.5
Q ss_pred CCCceeEEEcCCCCEEEEE-cCCCeEEEEeCC-CccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 79 VFGPESLEFDGLGRGPYTG-LADGRIVRWMGE-NVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~-~~~G~I~ri~~~-~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
...|.+++|+++|+.+|+. ..+++|..|+.+ .+....... .........|.+++|++
T Consensus 144 ~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~---------------------~~~~~~g~~p~~~~~sp 202 (365)
T 1jof_A 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS---------------------VDAPDPGDHPRWVAMHP 202 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE---------------------EECSSTTCCEEEEEECT
T ss_pred CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeee---------------------EecCCCCCCCCEeEECC
Confidence 4679999999999877765 456789888875 332221100 00001134689999999
Q ss_pred CCC-cEEEEeCCCc---eEEEECCCCeEEE---eeecCCCC--Ccc-------ccccEE-EcCCCc-EEEecCC
Q 039124 157 DTG-DLYIADAYYG---LLVVGSKGGLATP---LATQAGGK--PIL-------FANDLD-VHKNGS-IFFTDTS 212 (259)
Q Consensus 157 ~~G-~L~VaD~~~G---l~~v~~~gg~~~~---l~~~~~g~--pl~-------~~Ndl~-vd~dG~-IyfTDss 212 (259)
+ | .||+++...+ ++.++.++|+... ........ .-. .+++++ +++||+ +|+++..
T Consensus 203 d-g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 203 T-GNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp T-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred C-CCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 5 6 6788876544 4455665665431 11112110 011 588999 999997 8888753
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.11 E-value=5e-05 Score=65.78 Aligned_cols=126 Identities=14% Similarity=0.116 Sum_probs=76.3
Q ss_pred CCceeEEEcCCCCEEEE-EcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 80 FGPESLEFDGLGRGPYT-GLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt-~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
..|.+++++++|+.+|+ +..++.|+.|+.++..... .... .. .. ......|.++++++++
T Consensus 43 ~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~-~~~~-------~~----------~~-~~~~~~~~~~~~spdg 103 (349)
T 1jmx_B 43 FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF-HANL-------SS----------VP-GEVGRSMYSFAISPDG 103 (349)
T ss_dssp CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEES-------CC----------ST-TEEEECSSCEEECTTS
T ss_pred CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE-EEEc-------cc----------cc-ccccccccceEECCCC
Confidence 36999999999986664 5568999999987652211 1100 00 00 0002237899999953
Q ss_pred CcEEEEeCC------------CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeec
Q 039124 159 GDLYIADAY------------YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLE 226 (259)
Q Consensus 159 G~L~VaD~~------------~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e 226 (259)
..||+++.. ..|..+|.++++.......... + ..+.++++++||++|+++.
T Consensus 104 ~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~-~~~~~~~~s~dg~l~~~~~--------------- 166 (349)
T 1jmx_B 104 KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-P-RQVYLMRAADDGSLYVAGP--------------- 166 (349)
T ss_dssp SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-C-SSCCCEEECTTSCEEEESS---------------
T ss_pred CEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-C-CcccceeECCCCcEEEccC---------------
Confidence 357777643 4588888876432211111111 1 2478899999999888521
Q ss_pred cCCCceEEEEeCCCCcEEEe
Q 039124 227 GESTGRLLRYDPPTKSNSYC 246 (259)
Q Consensus 227 ~~~~GrL~rydp~tg~~~vl 246 (259)
.++.+|+++++....
T Consensus 167 -----~i~~~d~~~~~~~~~ 181 (349)
T 1jmx_B 167 -----DIYKMDVKTGKYTVA 181 (349)
T ss_dssp -----SEEEECTTTCCEEEE
T ss_pred -----cEEEEeCCCCceecc
Confidence 277788877765543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.10 E-value=4.7e-05 Score=69.06 Aligned_cols=114 Identities=15% Similarity=0.054 Sum_probs=74.2
Q ss_pred CCCceeEEEcCCCCEEEEEcCC-CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 79 VFGPESLEFDGLGRGPYTGLAD-GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~-G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
..++.++++|++|+.|.++... +.|+|+++++.....|....++ ....-.+.||+++++
T Consensus 136 ~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~--------------------~~~~~G~nGIv~~pd 195 (334)
T 2p9w_A 136 PFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGN--------------------GGQRPGYSGITFDPH 195 (334)
T ss_dssp CEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCC--------------------SSSCCSCSEEEEETT
T ss_pred ccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCC--------------------cccccCcceEEEeCC
Confidence 3468999999999977779889 9999999998744444221100 111223789999996
Q ss_pred CCcEEEEeCCCceEEEECCCCeEEEeeec--CCCCCccccccE-EEcCCCcE-EEecCC
Q 039124 158 TGDLYIADAYYGLLVVGSKGGLATPLATQ--AGGKPILFANDL-DVHKNGSI-FFTDTS 212 (259)
Q Consensus 158 ~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~--~~g~pl~~~Ndl-~vd~dG~I-yfTDss 212 (259)
+..|+|++....|+++|.+.-....+-.. -....+..+++| .+..+|++ ++++..
T Consensus 196 g~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~ 254 (334)
T 2p9w_A 196 SNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARA 254 (334)
T ss_dssp TTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEET
T ss_pred CCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCC
Confidence 33566777744499999874311011111 111356778885 66779986 898854
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00017 Score=61.92 Aligned_cols=104 Identities=14% Similarity=-0.007 Sum_probs=68.0
Q ss_pred CceeEEEcCCCCEEE-EEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 81 GPESLEFDGLGRGPY-TGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 81 gPE~ia~D~~G~~~y-t~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
.|.+++++++|+.+| ++..+++|..|+..+..... ... .. ........|.++++++++.
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~-~~~--------~~-----------~~~~~~~~~~~~~~s~dg~ 94 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG-RID--------LS-----------TPEERVKSLFGAALSPDGK 94 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE-EEE--------CC-----------BTTEEEECTTCEEECTTSS
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEe-eEE--------cC-----------CcccccccccceEECCCCC
Confidence 499999999997555 55567899999986653221 000 00 0000112688999999533
Q ss_pred cEEEEe------------CCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEe
Q 039124 160 DLYIAD------------AYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFT 209 (259)
Q Consensus 160 ~L~VaD------------~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfT 209 (259)
.||+++ ....|..+|.++++....... + ..++++++++||+ +|++
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~---~~~~~~~~s~dg~~l~~~ 152 (337)
T 1pby_B 95 TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--P---RQITMLAWARDGSKLYGL 152 (337)
T ss_dssp EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--C---SSCCCEEECTTSSCEEEE
T ss_pred EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--C---CCcceeEECCCCCEEEEe
Confidence 788885 235688999988764333321 2 2478999999998 8888
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00031 Score=62.18 Aligned_cols=100 Identities=18% Similarity=0.279 Sum_probs=68.6
Q ss_pred CceeEEEcCCCCEEE-EEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 81 GPESLEFDGLGRGPY-TGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 81 gPE~ia~D~~G~~~y-t~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
.+.+++|+++|+.+| ++..++.|..|+......... ......+.+++++++ |
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~--------------------------~~~~~~~~~~~~s~d-g 127 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT--------------------------VKTGKSPLGLALSPD-G 127 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE--------------------------EECSSSEEEEEECTT-S
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEE--------------------------EeCCCCcceEEECCC-C
Confidence 788999999998665 455679999999876521110 011235789999995 6
Q ss_pred c-EEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCC
Q 039124 160 D-LYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTS 212 (259)
Q Consensus 160 ~-L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss 212 (259)
+ ||++....+ |..+|..+++....... + ..+++++++++|+ +|++...
T Consensus 128 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~---~~~~~~~~~~dg~~l~~~~~~ 178 (391)
T 1l0q_A 128 KKLYVTNNGDKTVSVINTVTKAVINTVSV--G---RSPKGIAVTPDGTKVYVANFD 178 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEEC--C---SSEEEEEECTTSSEEEEEETT
T ss_pred CEEEEEeCCCCEEEEEECCCCcEEEEEec--C---CCcceEEECCCCCEEEEEeCC
Confidence 5 667776555 77889888764433322 1 2468999999996 7777643
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.00 E-value=7.8e-05 Score=73.74 Aligned_cols=121 Identities=17% Similarity=0.146 Sum_probs=84.8
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
...+++.|++|+ +|+++.++.|+++++++..+..+.. . . .-.......+..|+ +|+
T Consensus 496 ~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~--~---~-----------------~l~~~~i~~i~~d~-~g~ 551 (781)
T 3v9f_A 496 FVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQ--Y---E-----------------GFCSNTINQIYRSS-KGQ 551 (781)
T ss_dssp CEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECT--T---T-----------------TCSCSCEEEEEECT-TSC
T ss_pred eeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccC--C---C-----------------CCCCCeeEEEEECC-CCC
Confidence 456788999998 7777775569999987664443210 0 0 01123446888888 499
Q ss_pred EEEEeCCCce-EEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCC
Q 039124 161 LYIADAYYGL-LVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPP 239 (259)
Q Consensus 161 L~VaD~~~Gl-~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~ 239 (259)
|||+-. .|| +++++++++.+.+. ..+|.+-...+.+..|++|+||++... -|.+|||+
T Consensus 552 lWi~T~-~Glv~~~d~~~~~~~~~~-~~~gl~~~~i~~i~~d~~g~lW~~t~~-------------------Gl~~~~~~ 610 (781)
T 3v9f_A 552 MWLATG-EGLVCFPSARNFDYQVFQ-RKEGLPNTHIRAISEDKNGNIWASTNT-------------------GISCYITS 610 (781)
T ss_dssp EEEEET-TEEEEESCTTTCCCEEEC-GGGTCSCCCCCEEEECSSSCEEEECSS-------------------CEEEEETT
T ss_pred EEEEEC-CCceEEECCCCCcEEEcc-ccCCCCCceEEEEEECCCCCEEEEcCC-------------------ceEEEECC
Confidence 999876 899 99999988766554 345666666789999999999998532 26777777
Q ss_pred CCcEEEe
Q 039124 240 TKSNSYC 246 (259)
Q Consensus 240 tg~~~vl 246 (259)
+++.+..
T Consensus 611 ~~~~~~~ 617 (781)
T 3v9f_A 611 KKCFYTY 617 (781)
T ss_dssp TTEEEEE
T ss_pred CCceEEe
Confidence 6655543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=9.2e-05 Score=66.14 Aligned_cols=109 Identities=12% Similarity=0.100 Sum_probs=64.1
Q ss_pred CCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCC-CccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 77 DEVFGPESLEFDGLGRGPYTGLADGRIVRWMGE-NVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 77 ~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~-~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
+....|.+++++++|+.+|+...+ .|..|+.+ ....... . . ....|.|.+++++
T Consensus 37 ~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~-~----------------------~-~~~~g~~~~~~~s 91 (365)
T 1jof_A 37 PQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHE-A----------------------S-HPIGGHPRANDAD 91 (365)
T ss_dssp CTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEE-E----------------------E-EECCSSGGGGCTT
T ss_pred CCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEe-e----------------------E-eecCCCCccEEEC
Confidence 345689999999999988888776 77777653 2212110 0 0 0112457889999
Q ss_pred CCCCc---EEEEe-------C-----CCc---eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCC
Q 039124 156 KDTGD---LYIAD-------A-----YYG---LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTS 212 (259)
Q Consensus 156 ~~~G~---L~VaD-------~-----~~G---l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss 212 (259)
++ |+ +|+++ . ..| ++.++.++.....+. .........++++++++||+ +|++|..
T Consensus 92 pd-g~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~spdG~~l~~~~~~ 165 (365)
T 1jof_A 92 TN-TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQ-NYEYQENTGIHGMVFDPTETYLYSADLT 165 (365)
T ss_dssp SC-CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEE-EEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred CC-CCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEe-eEEeCCCCcceEEEECCCCCEEEEEcCC
Confidence 95 87 23444 1 233 444544444322222 11001224689999999997 8888754
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00023 Score=70.44 Aligned_cols=110 Identities=9% Similarity=0.087 Sum_probs=74.2
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc-E
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD-L 161 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~-L 161 (259)
.+++.|++|+ +|+++.++.|.++++....+..+.... .+ ....-.......++.|+ +|+ |
T Consensus 360 ~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~-------~~----------~~~~l~~~~v~~i~~d~-~g~~l 420 (795)
T 4a2l_A 360 SCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQE-------DE----------SARGIGSNNIKAVYVDE-KKSLV 420 (795)
T ss_dssp EEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC-----------------------CCSCSCEEEEEEET-TTTEE
T ss_pred EEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCC-------CC----------cccCCCCccEEEEEEcC-CCCEE
Confidence 4788899998 888998888999998765444331100 00 00000112345788898 499 9
Q ss_pred EEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 162 YIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 162 ~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
||+-...||+++++++++.+.+.....+.+-.....+..|++|+||++..
T Consensus 421 Wigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~ 470 (795)
T 4a2l_A 421 YIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL 470 (795)
T ss_dssp EEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES
T ss_pred EEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec
Confidence 99877789999999988776664322222345678899999999999864
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00052 Score=61.59 Aligned_cols=123 Identities=17% Similarity=0.065 Sum_probs=79.3
Q ss_pred CCCCCceeEEEcCCCCEEEEE-cCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 77 DEVFGPESLEFDGLGRGPYTG-LADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 77 ~~l~gPE~ia~D~~G~~~yt~-~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
..-..+.+++|+++|+.+|+. ..+|.|..|+........ . ....+.|.+++++
T Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~-------------------------~-~~~~~~~~~~~~~ 262 (433)
T 3bws_A 209 LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIR-------------------------K-TDKIGLPRGLLLS 262 (433)
T ss_dssp CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-------------------------E-CCCCSEEEEEEEC
T ss_pred CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEE-------------------------E-ecCCCCceEEEEc
Confidence 335678999999999877654 478999999986552111 0 1113458899999
Q ss_pred CCCCcEEEEeC--------CCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeec
Q 039124 156 KDTGDLYIADA--------YYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLE 226 (259)
Q Consensus 156 ~~~G~L~VaD~--------~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e 226 (259)
+++..|+++.. ...|..+|..+++....... -..+..++++++|+ +|++.+.
T Consensus 263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~-------------- 323 (433)
T 3bws_A 263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP-----PGNKRHIVSGNTENKIYVSDMC-------------- 323 (433)
T ss_dssp TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE-----EECEEEEEECSSTTEEEEEETT--------------
T ss_pred CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC-----CCCcceEEECCCCCEEEEEecC--------------
Confidence 95335666653 22477889887754333311 12577899999995 8888653
Q ss_pred cCCCceEEEEeCCCCcEEEec
Q 039124 227 GESTGRLLRYDPPTKSNSYCV 247 (259)
Q Consensus 227 ~~~~GrL~rydp~tg~~~vl~ 247 (259)
.|++..||.++++....+
T Consensus 324 ---~~~v~v~d~~~~~~~~~~ 341 (433)
T 3bws_A 324 ---CSKIEVYDLKEKKVQKSI 341 (433)
T ss_dssp ---TTEEEEEETTTTEEEEEE
T ss_pred ---CCEEEEEECCCCcEEEEe
Confidence 246666676665544333
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00014 Score=71.88 Aligned_cols=107 Identities=8% Similarity=-0.023 Sum_probs=75.0
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
...+++.|++|+ +|+++. +.|+++++++..+..+... . ...........|..|+ +|+
T Consensus 451 ~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~---------~-----------~~~~~~~~i~~i~~d~-~g~ 507 (781)
T 3v9f_A 451 DVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDT---------S-----------NSQLLENFVRSIAQDS-EGR 507 (781)
T ss_dssp CEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECT---------T-----------TSSCSCSCEEEEEECT-TCC
T ss_pred eEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccC---------c-----------ccccccceeEEEEEcC-CCC
Confidence 345788888887 777776 5699999876544332100 0 0001124567899998 499
Q ss_pred EEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 161 LYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 161 L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
|||+-...||+++++++++.+.+.. .++.+-...+.+..|++|+||++..
T Consensus 508 lWigt~~~Gl~~~~~~~~~~~~~~~-~~~l~~~~i~~i~~d~~g~lWi~T~ 557 (781)
T 3v9f_A 508 FWIGTFGGGVGIYTPDMQLVRKFNQ-YEGFCSNTINQIYRSSKGQMWLATG 557 (781)
T ss_dssp EEEEESSSCEEEECTTCCEEEEECT-TTTCSCSCEEEEEECTTSCEEEEET
T ss_pred EEEEEcCCCEEEEeCCCCeEEEccC-CCCCCCCeeEEEEECCCCCEEEEEC
Confidence 9999877899999999887666543 3455556788999999999999764
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00035 Score=60.37 Aligned_cols=58 Identities=14% Similarity=0.215 Sum_probs=40.9
Q ss_pred CcceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 148 RPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 148 rPlGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
...++.+++ +|+|||+....||+++++++........ .+ .....+.++++|+||++..
T Consensus 216 ~~~~~~~~~-~g~l~v~t~~~gl~~~~~~g~~~~~~~~--~~---~~~~~~~~~~~g~l~v~t~ 273 (330)
T 3hxj_A 216 TVTRPAISE-DGTIYVTSLDGHLYAINPDGTEKWRFKT--GK---RIESSPVIGNTDTIYFGSY 273 (330)
T ss_dssp CCSCCEECT-TSCEEEEETTTEEEEECTTSCEEEEEEC--SS---CCCSCCEECTTSCEEEECT
T ss_pred ceeceEECC-CCeEEEEcCCCeEEEECCCCCEeEEeeC--CC---CccccceEcCCCeEEEecC
Confidence 356788888 4899999877889999877665433321 11 2355678888999999864
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00034 Score=60.39 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=60.0
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEE
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLY 162 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~ 162 (259)
.+++.|++|+ +|++..++.|+++++++. . .+... ........+.++. +|.||
T Consensus 140 ~~~~~~~~g~-l~vgt~~~~l~~~d~~g~-~-~~~~~------------------------~~~~~~~~~~~d~-~g~l~ 191 (330)
T 3hxj_A 140 ATPIVSEDGT-IYVGSNDNYLYAINPDGT-E-KWRFK------------------------TNDAITSAASIGK-DGTIY 191 (330)
T ss_dssp SCCEECTTSC-EEEECTTSEEEEECTTSC-E-EEEEE------------------------CSSCCCSCCEECT-TCCEE
T ss_pred eeeEEcCCCE-EEEEcCCCEEEEECCCCC-E-eEEEe------------------------cCCCceeeeEEcC-CCEEE
Confidence 3567777777 777777888999888743 1 11110 0011234567787 48999
Q ss_pred EEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 163 IADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 163 VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
|+. .+|++++.++...... ... ....+.+.++++|+||++..
T Consensus 192 v~t--~~l~~~d~~g~~~~~~--~~~---~~~~~~~~~~~~g~l~v~t~ 233 (330)
T 3hxj_A 192 FGS--DKVYAINPDGTEKWNF--YAG---YWTVTRPAISEDGTIYVTSL 233 (330)
T ss_dssp EES--SSEEEECTTSCEEEEE--CCS---SCCCSCCEECTTSCEEEEET
T ss_pred EEe--CEEEEECCCCcEEEEE--ccC---CcceeceEECCCCeEEEEcC
Confidence 987 7899999544432222 221 13577888999999999865
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.86 E-value=8.6e-05 Score=67.20 Aligned_cols=111 Identities=12% Similarity=0.040 Sum_probs=68.6
Q ss_pred CCCceeEEEcCC---CCEEEEE-cC-------CCeEEEEeCCCc--cEEEEEEeecCccccccccCccccccccccc-cC
Q 039124 79 VFGPESLEFDGL---GRGPYTG-LA-------DGRIVRWMGENV--GWETFAIVTSNWSEKLCARGVDSTTAKQWKH-EK 144 (259)
Q Consensus 79 l~gPE~ia~D~~---G~~~yt~-~~-------~G~I~ri~~~~~--~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~-~~ 144 (259)
..+|.+++++++ ++.+|+. .. ..+|.|++.+.. ...... .+.++ +.. ..
T Consensus 65 ~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~--------~i~~~---------~p~~~~ 127 (353)
T 2g8s_A 65 QGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFR--------TVFRQ---------MPKLST 127 (353)
T ss_dssp TCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEE--------EEEEC---------SSCCBS
T ss_pred CCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceE--------EEEEE---------CCCCCC
Confidence 458899999985 3445554 32 347888865432 111110 01100 000 01
Q ss_pred cCCCcceEEEeCCCCcEEEEeCC-------------C-ceEEEECCCC-------------eEEEeeecCCCCCcccccc
Q 039124 145 WCGRPLGLRFNKDTGDLYIADAY-------------Y-GLLVVGSKGG-------------LATPLATQAGGKPILFAND 197 (259)
Q Consensus 145 ~~grPlGl~~d~~~G~L~VaD~~-------------~-Gl~~v~~~gg-------------~~~~l~~~~~g~pl~~~Nd 197 (259)
....|.+|+|+++ |.|||+... . .|+++++++. ..+.++. .++-|.+
T Consensus 128 ~~h~~~~l~~~pd-G~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~-----G~rnp~g 201 (353)
T 2g8s_A 128 GNHFGGRLVFDGK-GYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSY-----GIRNPQG 201 (353)
T ss_dssp SSCCCCCEEECSS-SEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEE-----CCSEEEE
T ss_pred CcccCccEEECCC-CcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEE-----cCcCccc
Confidence 2334679999994 999999643 2 3999999875 1222322 3567999
Q ss_pred EEEcC-CCcEEEecCC
Q 039124 198 LDVHK-NGSIFFTDTS 212 (259)
Q Consensus 198 l~vd~-dG~IyfTDss 212 (259)
+++|+ +|++|++|..
T Consensus 202 l~~d~~~g~l~~~d~g 217 (353)
T 2g8s_A 202 MAMNPWSNALWLNEHG 217 (353)
T ss_dssp EEEETTTTEEEEEEEC
T ss_pred eEEECCCCCEEEEecC
Confidence 99999 8999999986
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00029 Score=60.87 Aligned_cols=102 Identities=9% Similarity=-0.089 Sum_probs=68.2
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc-EE
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD-LY 162 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~-L~ 162 (259)
++++.+++.+++++..++.|+.|+..+..... . +. .+....|.+++++++ |+ +|
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~-~----------------------~~-~~~~~~~~~~~~s~d-g~~~~ 58 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYK-S----------------------CV-MPDKFGPGTAMMAPD-NRTAY 58 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEE-E----------------------EE-CSSCCSSCEEEECTT-SSEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEE-E----------------------Ee-cCCCCCCceeEECCC-CCEEE
Confidence 55676778877788889999999987652211 0 01 011125889999995 65 78
Q ss_pred EEeCCCc-eEEEECCCCeEEEeeecCCCC---CccccccEEEcCCCc-EEEecC
Q 039124 163 IADAYYG-LLVVGSKGGLATPLATQAGGK---PILFANDLDVHKNGS-IFFTDT 211 (259)
Q Consensus 163 VaD~~~G-l~~v~~~gg~~~~l~~~~~g~---pl~~~Ndl~vd~dG~-IyfTDs 211 (259)
+++...+ |..+|.++++...... ..+. ....++++++++||+ +|++..
T Consensus 59 v~~~~~~~i~~~d~~t~~~~~~~~-~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 111 (349)
T 1jmx_B 59 VLNNHYGDIYGIDLDTCKNTFHAN-LSSVPGEVGRSMYSFAISPDGKEVYATVN 111 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEE-SCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred EEeCCCCcEEEEeCCCCcEEEEEE-cccccccccccccceEECCCCCEEEEEcc
Confidence 8876555 8888998886443332 1111 134589999999997 777763
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00045 Score=68.38 Aligned_cols=107 Identities=21% Similarity=0.190 Sum_probs=70.6
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
...+++.|++|+ +|+++.+ .|.+++++...+..+... . + ...........+..|+ +|+
T Consensus 453 ~v~~i~~d~~g~-lwigt~~-Gl~~~~~~~~~~~~~~~~--~------~-----------~~~~~~~~i~~i~~d~-~g~ 510 (795)
T 4a2l_A 453 NVYAILPDGEGN-LWLGTLS-ALVRFNPEQRSFTTIEKE--K------D-----------GTPVVSKQITTLFRDS-HKR 510 (795)
T ss_dssp CEEEEEECSSSC-EEEEESS-CEEEEETTTTEEEECCBC--T------T-----------CCBCCCCCEEEEEECT-TCC
T ss_pred eeEEEEECCCCC-EEEEecC-ceeEEeCCCCeEEEcccc--c------c-----------ccccCCceEEEEEECC-CCC
Confidence 345788888898 6777764 599999877644332100 0 0 0000113346788898 499
Q ss_pred EEEEeCCCceEEEECCCCeEEEeee--cCCCCCccccccEEEcCCCcEEEecC
Q 039124 161 LYIADAYYGLLVVGSKGGLATPLAT--QAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 161 L~VaD~~~Gl~~v~~~gg~~~~l~~--~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
|||+-. .||++++++++.. .+.. ...+.+-...+.+..|++|+||++..
T Consensus 511 lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~ 561 (795)
T 4a2l_A 511 LWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR 561 (795)
T ss_dssp EEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES
T ss_pred EEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC
Confidence 999987 8999999988765 3321 22233445778899999999999764
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0012 Score=56.43 Aligned_cols=95 Identities=8% Similarity=-0.023 Sum_probs=61.0
Q ss_pred CEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC-cEEEEeCCCc-
Q 039124 92 RGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG-DLYIADAYYG- 169 (259)
Q Consensus 92 ~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G-~L~VaD~~~G- 169 (259)
+.++++..++.|..|+........ . +...+..++|.+++++++ | .+|+++...+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~-~----------------------~~~~~~~~~~~~~~~s~d-g~~l~v~~~~~~~ 57 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDK-V----------------------ITIADAGPTPMVPMVAPG-GRIAYATVNKSES 57 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEE-E----------------------EECTTCTTCCCCEEECTT-SSEEEEEETTTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEE-E----------------------EEcCCCCCCccceEEcCC-CCEEEEEeCCCCe
Confidence 357888889999999987652111 0 010111116899999995 6 6788887654
Q ss_pred eEEEECCCCeEEEeeec-CCCCCccccccEEEcCCCc-EEEec
Q 039124 170 LLVVGSKGGLATPLATQ-AGGKPILFANDLDVHKNGS-IFFTD 210 (259)
Q Consensus 170 l~~v~~~gg~~~~l~~~-~~g~pl~~~Ndl~vd~dG~-IyfTD 210 (259)
|..+|.++++....... ..+..-..++++++++||+ +|+++
T Consensus 58 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 100 (337)
T 1pby_B 58 LVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYE 100 (337)
T ss_dssp EEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEE
T ss_pred EEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEe
Confidence 88899888764332221 1111122588999999995 88886
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00036 Score=61.21 Aligned_cols=108 Identities=12% Similarity=0.033 Sum_probs=69.3
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEE-EEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 82 PESLEFDGLGRGPYTGLADGRIVRWMGENVGWET-FAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~-fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
+|+..+..+|..+|++..+++|+.+++....... +. +.++ ......++.|.+. +|.
T Consensus 127 ~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~---------V~~~------------g~~~~~lNELe~~--~G~ 183 (262)
T 3nol_A 127 GEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTIT---------VTAH------------GEELPELNELEWV--DGE 183 (262)
T ss_dssp SCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEE---------CEET------------TEECCCEEEEEEE--TTE
T ss_pred CCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEE---------eccC------------CccccccceeEEE--CCE
Confidence 4644444556668888888999999998653221 11 1110 0112344567776 489
Q ss_pred EEEEeCCC-ceEEEECCCCeEEEeeecC--------CCCCccccccEEEcCCCc-EEEecCC
Q 039124 161 LYIADAYY-GLLVVGSKGGLATPLATQA--------GGKPILFANDLDVHKNGS-IFFTDTS 212 (259)
Q Consensus 161 L~VaD~~~-Gl~~v~~~gg~~~~l~~~~--------~g~pl~~~Ndl~vd~dG~-IyfTDss 212 (259)
||+..... .|.+||+++|++...++-. .......+|+||.+++++ +|+|.-.
T Consensus 184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 184 IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 99888654 4999999999866555421 112245789999999764 9998754
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00042 Score=60.96 Aligned_cols=109 Identities=13% Similarity=0.049 Sum_probs=70.4
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEE-EEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWET-FAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~-fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
.+|+..+..+|..+|++..+++|..++++...... +. +.+++ .....++.|.+. +|
T Consensus 135 ~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~---------V~~~g------------~~v~~lNeLe~~--dG 191 (268)
T 3nok_A 135 SGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQ---------VKLRG------------QPVELINELECA--NG 191 (268)
T ss_dssp SSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEE---------CEETT------------EECCCEEEEEEE--TT
T ss_pred CCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEE---------eCCCC------------cccccccccEEe--CC
Confidence 35544444456778888889999999998753221 11 11100 112345788877 48
Q ss_pred cEEEEeCCC-ceEEEECCCCeEEEeeecC---------CCCCccccccEEEcCCC-cEEEecCC
Q 039124 160 DLYIADAYY-GLLVVGSKGGLATPLATQA---------GGKPILFANDLDVHKNG-SIFFTDTS 212 (259)
Q Consensus 160 ~L~VaD~~~-Gl~~v~~~gg~~~~l~~~~---------~g~pl~~~Ndl~vd~dG-~IyfTDss 212 (259)
.||+..... .|.+||+++|++...++-. .......+|+||.++++ ++|+|.-.
T Consensus 192 ~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 192 VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 999887654 4999999999865544311 11134579999999975 59998754
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00014 Score=68.41 Aligned_cols=108 Identities=17% Similarity=0.114 Sum_probs=66.6
Q ss_pred cCCCcceEEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCC----CCccccccEEEcC----CCcEEEecCCCCC
Q 039124 145 WCGRPLGLRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGG----KPILFANDLDVHK----NGSIFFTDTSKRY 215 (259)
Q Consensus 145 ~~grPlGl~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g----~pl~~~Ndl~vd~----dG~IyfTDss~~~ 215 (259)
....|.+|+|+++ |+|||++...+ |+++++.+|..+.+..-.+. ....-+.||+++| +|.||++++...-
T Consensus 25 ~l~~P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 25 NLNKPHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp CCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCCCceEEEEcCC-CcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 3567999999995 99999998765 99998876666655432111 0123466999999 7889999874110
Q ss_pred CcccceeeeeccCCCceEEEEeCCCC-----cEEEecC-----CCCCcceeEE
Q 039124 216 NRVDHFFILLEGESTGRLLRYDPPTK-----SNSYCVR-----WLGFSKWSTI 258 (259)
Q Consensus 216 ~~~~~~~~~~e~~~~GrL~rydp~tg-----~~~vl~~-----~L~~pNGval 258 (259)
...+ -......+|+|++.+.+ +.+++++ +.+++++|+|
T Consensus 104 ~~~~-----~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f 151 (454)
T 1cru_A 104 KSTD-----KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVI 151 (454)
T ss_dssp TC-------CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEE
T ss_pred CCCc-----cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeE
Confidence 0000 00011357888875422 2345554 3456777765
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.002 Score=53.59 Aligned_cols=99 Identities=13% Similarity=0.039 Sum_probs=64.2
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCC-ccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGEN-VGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~-~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
....+++|.++|+.++++. ++.|+.++.++ ..... . ...+.......+++.++
T Consensus 42 ~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~-----------~-------------~~~~~~~~~~~~~~spd- 95 (297)
T 2ojh_A 42 ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK-----------V-------------DTGFATICNNDHGISPD- 95 (297)
T ss_dssp SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE-----------C-------------CCTTCCCBCSCCEECTT-
T ss_pred cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE-----------e-------------ccccccccccceEECCC-
Confidence 4577999999999776654 78999999876 42211 0 00111244578999995
Q ss_pred CcEEEEeC-----CCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEec
Q 039124 159 GDLYIADA-----YYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTD 210 (259)
Q Consensus 159 G~L~VaD~-----~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTD 210 (259)
|..+++-. ...|+.++.+++..+.+... . ..+.+++.+||+ |+++.
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~---~~~~~~~spdg~~l~~~~ 147 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN---L---PSYWHGWSPDGKSFTYCG 147 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCCCEECCSS---S---SEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCceEEeecC---C---CccceEECCCCCEEEEEE
Confidence 76554433 23589999888765544321 1 267789999998 66554
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0071 Score=52.57 Aligned_cols=109 Identities=10% Similarity=0.065 Sum_probs=69.1
Q ss_pred cCCCCCceeEEEcCCCCEEEE-EcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 76 VDEVFGPESLEFDGLGRGPYT-GLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt-~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
.|-...+.++++|++++.+|+ ...+++|++++.++..+..+ . ...++.+-||++
T Consensus 23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i------------------------~-l~g~~D~EGIa~ 77 (255)
T 3qqz_A 23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTI------------------------P-LDFVKDLETIEY 77 (255)
T ss_dssp TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEE------------------------E-CSSCSSEEEEEE
T ss_pred CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEE------------------------e-cCCCCChHHeEE
Confidence 344467899999997776775 77899999999986522211 0 123467889999
Q ss_pred eCCCCcEEEEeCCC-ceEEEE--CCCCeEEEeee-cCC---CCCccccccEEEcCCC-cEEEecC
Q 039124 155 NKDTGDLYIADAYY-GLLVVG--SKGGLATPLAT-QAG---GKPILFANDLDVHKNG-SIFFTDT 211 (259)
Q Consensus 155 d~~~G~L~VaD~~~-Gl~~v~--~~gg~~~~l~~-~~~---g~pl~~~Ndl~vd~dG-~IyfTDs 211 (259)
+. +|.++|++-.. .++.++ .++. ...+.. ... ..+-.-..+|+.|+++ ++|++.-
T Consensus 78 ~~-~g~~~vs~E~~~~l~~~~v~~~~~-i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E 140 (255)
T 3qqz_A 78 IG-DNQFVISDERDYAIYVISLTPNSE-VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE 140 (255)
T ss_dssp CS-TTEEEEEETTTTEEEEEEECTTCC-EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE
T ss_pred eC-CCEEEEEECCCCcEEEEEcCCCCe-eeeeeeeccccccccccCCcceEEEeCCCCEEEEEEC
Confidence 98 48888887655 455554 4432 222211 111 1112235799999987 6888653
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00038 Score=63.45 Aligned_cols=80 Identities=20% Similarity=0.123 Sum_probs=56.8
Q ss_pred CcCCCcceEEEeCCCCcEEEEeCCC-ceEEEECCCCeEEEeee--cCCCCCccccccEEEcC----CCcEEEecCCCCCC
Q 039124 144 KWCGRPLGLRFNKDTGDLYIADAYY-GLLVVGSKGGLATPLAT--QAGGKPILFANDLDVHK----NGSIFFTDTSKRYN 216 (259)
Q Consensus 144 ~~~grPlGl~~d~~~G~L~VaD~~~-Gl~~v~~~gg~~~~l~~--~~~g~pl~~~Ndl~vd~----dG~IyfTDss~~~~ 216 (259)
.....|.+|+|.++ |+|||++... .|+++++++++.+.+.. .+.......++||+++| +|.||++.+..
T Consensus 29 ~gL~~P~~ia~~pd-G~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~--- 104 (347)
T 3das_A 29 TGLNSPWGLAPLPG-GDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA--- 104 (347)
T ss_dssp CCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS---
T ss_pred cCCCCceEEEEcCC-CcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC---
Confidence 34567999999994 9999999844 48999987776655432 12222356789999998 48899986532
Q ss_pred cccceeeeeccCCCceEEEEeCC
Q 039124 217 RVDHFFILLEGESTGRLLRYDPP 239 (259)
Q Consensus 217 ~~~~~~~~~e~~~~GrL~rydp~ 239 (259)
...||+||...
T Consensus 105 ------------~~~~v~R~~~~ 115 (347)
T 3das_A 105 ------------SDNRIVRMLYD 115 (347)
T ss_dssp ------------SSEEEEEEEBC
T ss_pred ------------CCCEEEEEEeC
Confidence 13478888654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.001 Score=57.67 Aligned_cols=108 Identities=11% Similarity=0.061 Sum_probs=69.6
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEE-EEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 82 PESLEFDGLGRGPYTGLADGRIVRWMGENVGWET-FAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~-fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
+|+..+..+|..+|++..+++|..++++...... +. +.+++ .....++.|.+. +|.
T Consensus 105 ~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~---------V~~~g------------~~~~~lNeLe~~--~G~ 161 (243)
T 3mbr_X 105 GEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIK---------VTAGG------------RPLDNLNELEWV--NGE 161 (243)
T ss_dssp SCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEE---------CEETT------------EECCCEEEEEEE--TTE
T ss_pred CCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEE---------EccCC------------cccccceeeEEe--CCE
Confidence 3555554556668888889999999998753221 11 11100 112345677766 489
Q ss_pred EEEEeCCC-ceEEEECCCCeEEEeeec--C-C------CCCccccccEEEcCCC-cEEEecCC
Q 039124 161 LYIADAYY-GLLVVGSKGGLATPLATQ--A-G------GKPILFANDLDVHKNG-SIFFTDTS 212 (259)
Q Consensus 161 L~VaD~~~-Gl~~v~~~gg~~~~l~~~--~-~------g~pl~~~Ndl~vd~dG-~IyfTDss 212 (259)
||+..... .|.+||+++|++.-.++- . + ......+|+||.++++ ++|+|.-.
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 99888644 599999999986555431 1 0 1234579999999975 59999754
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00085 Score=62.70 Aligned_cols=95 Identities=9% Similarity=-0.141 Sum_probs=63.3
Q ss_pred CCCCEEEEEcCC-----CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEE
Q 039124 89 GLGRGPYTGLAD-----GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYI 163 (259)
Q Consensus 89 ~~G~~~yt~~~~-----G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~V 163 (259)
++++.+|+.... +.|..|+........ ..+.+..| |++++++...|||
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~--------------------------~I~vG~~P-gia~SpDgk~lyV 134 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILG--------------------------MTDGGFLP-HPVAAEDGSFFAQ 134 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEE--------------------------EEEECSSC-EEEECTTSSCEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEE--------------------------EEECCCCC-ceEECCCCCEEEE
Confidence 356667776553 699999988763211 01234569 9999997567999
Q ss_pred EeCC----------CceEEEECCCCeEEEeeecCC-CCC---ccccccEEEcCCCc-EEEecC
Q 039124 164 ADAY----------YGLLVVGSKGGLATPLATQAG-GKP---ILFANDLDVHKNGS-IFFTDT 211 (259)
Q Consensus 164 aD~~----------~Gl~~v~~~gg~~~~l~~~~~-g~p---l~~~Ndl~vd~dG~-IyfTDs 211 (259)
++.+ ..|..+|..+++...-+. +. ... ...|.++++++||+ +|+++.
T Consensus 135 an~~~~~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~lyV~n~ 196 (426)
T 3c75_H 135 ASTVFERIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKNLLFYQF 196 (426)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSEEEEEEC
T ss_pred EeccccccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCEEEEEec
Confidence 9852 238899998875322111 22 111 24799999999996 999874
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0016 Score=60.07 Aligned_cols=97 Identities=12% Similarity=-0.082 Sum_probs=64.5
Q ss_pred cCCCCEEEEEcC-----CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEE
Q 039124 88 DGLGRGPYTGLA-----DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLY 162 (259)
Q Consensus 88 D~~G~~~yt~~~-----~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~ 162 (259)
.++++.+|+... +++|..++........ ..+.+..| +++++++...||
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~--------------------------~I~vG~~P-~va~spDG~~ly 93 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG--------------------------MIDGGFLP-NPVVADDGSFIA 93 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE--------------------------EEEECSSC-EEEECTTSSCEE
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEE--------------------------EEECCCCC-cEEECCCCCEEE
Confidence 467887888755 6899999987652211 01234558 499999755799
Q ss_pred EEeCC----------CceEEEECCCCeEEEeeecCCCC---CccccccEEEcCCCc-EEEecC
Q 039124 163 IADAY----------YGLLVVGSKGGLATPLATQAGGK---PILFANDLDVHKNGS-IFFTDT 211 (259)
Q Consensus 163 VaD~~----------~Gl~~v~~~gg~~~~l~~~~~g~---pl~~~Ndl~vd~dG~-IyfTDs 211 (259)
|++.+ ..|..+|.++.+...-+.-..|. ....|.++++++||+ +|+++.
T Consensus 94 Van~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~ 156 (386)
T 3sjl_D 94 HASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF 156 (386)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC
T ss_pred EEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEc
Confidence 99853 23888999887532211111111 134799999999997 999975
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0034 Score=59.88 Aligned_cols=115 Identities=15% Similarity=0.080 Sum_probs=71.9
Q ss_pred CCceeEEEcC----CCCEEEEEcC-CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 80 FGPESLEFDG----LGRGPYTGLA-DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 80 ~gPE~ia~D~----~G~~~yt~~~-~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
.+|.++++++ +|+.+|++.. ++.|..|+......... +. .. -+. .. -...+...++.++++
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~-i~-~~----g~~--~~------~~~~~~~~~v~~i~~ 287 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI-VS-TR----GMT--VD------TQTYHPEPRVAAIIA 287 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE-EE-CC----EEC--SS------SCCEESCCCEEEEEE
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccccee-ec-cc----Ccc--cC------ccccccCCceEEEEE
Confidence 5799999999 9999998874 79999998765432110 00 00 000 00 000123447889999
Q ss_pred eCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecC
Q 039124 155 NKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDT 211 (259)
Q Consensus 155 d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDs 211 (259)
.++++.+||+....| |..+|..++....+ ..++. -.++.++++++||+ +|++..
T Consensus 288 s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~-~~i~~--~~~~~~~~~spdg~~l~va~~ 343 (543)
T 1nir_A 288 SHEHPEFIVNVKETGKVLLVNYKDIDNLTV-TSIGA--APFLHDGGWDSSHRYFMTAAN 343 (543)
T ss_dssp CSSSSEEEEEETTTTEEEEEECTTSSSCEE-EEEEC--CSSCCCEEECTTSCEEEEEEG
T ss_pred CCCCCEEEEEECCCCeEEEEEecCCCccee-EEecc--CcCccCceECCCCCEEEEEec
Confidence 986567777776665 77888765432111 11111 24799999999998 677754
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0021 Score=62.04 Aligned_cols=74 Identities=7% Similarity=-0.072 Sum_probs=53.4
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCC--CccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe--
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGE--NVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN-- 155 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~--~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d-- 155 (259)
..|++++++++|+.+|++..+|.|..|+.. ...... ....+..|.+++|+
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~--------------------------~i~~G~~P~~ia~s~~ 250 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA--------------------------EIKIGSEARSIETSKM 250 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE--------------------------EEECCSEEEEEEECCS
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE--------------------------EEecCCCCceeEEccc
Confidence 479999999999999999999999999984 321110 01235568999999
Q ss_pred --CCCCcEEEEeCCCc-eEEEECCCCe
Q 039124 156 --KDTGDLYIADAYYG-LLVVGSKGGL 179 (259)
Q Consensus 156 --~~~G~L~VaD~~~G-l~~v~~~gg~ 179 (259)
+++..+||++...+ +..+|..+.+
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~t~~ 277 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGETLE 277 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred cCCCCCEEEEEEccCCeEEEEECCCCc
Confidence 55346888876544 6777877654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0018 Score=59.75 Aligned_cols=85 Identities=14% Similarity=0.182 Sum_probs=63.7
Q ss_pred EEEeCCCCcEEEEeC----------CCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc--EEEecCCCCCCccc
Q 039124 152 LRFNKDTGDLYIADA----------YYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS--IFFTDTSKRYNRVD 219 (259)
Q Consensus 152 l~~d~~~G~L~VaD~----------~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~--IyfTDss~~~~~~~ 219 (259)
++++++.++|||+.. ...|+.||.+++++..-+. . | ..+++|++++||+ +|.|+..
T Consensus 285 ~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~-v-g---~~~~~lavs~D~~~~ly~tn~~------- 352 (386)
T 3sjl_D 285 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-M-G---HEIDSINVSQDEKPLLYALSTG------- 352 (386)
T ss_dssp EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-E-E---EEECEEEECSSSSCEEEEEETT-------
T ss_pred eeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE-C-C---CCcceEEECCCCCeEEEEEcCC-------
Confidence 666877789999853 1239999999886432221 1 1 2689999999996 6777642
Q ss_pred ceeeeeccCCCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 220 HFFILLEGESTGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 220 ~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
+|.|.-||..|++...-++....||-+++
T Consensus 353 ----------~~~VsViD~~t~k~~~~i~~~~~p~~l~~ 381 (386)
T 3sjl_D 353 ----------DKTLYIHDAESGEELRSVNQLGHGPQVIT 381 (386)
T ss_dssp ----------TTEEEEEETTTCCEEEEECCCCSSCCEEE
T ss_pred ----------CCeEEEEECCCCcEEEEecCCCCCceeEE
Confidence 46799999999998888888899998876
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0081 Score=54.80 Aligned_cols=112 Identities=14% Similarity=0.200 Sum_probs=71.4
Q ss_pred CCCceeEEE--cCC-CC-EEEEEcCCCeEEEEeC--C-CccEEEEEEeecCccccccccCccccccccccccCcCCCcce
Q 039124 79 VFGPESLEF--DGL-GR-GPYTGLADGRIVRWMG--E-NVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLG 151 (259)
Q Consensus 79 l~gPE~ia~--D~~-G~-~~yt~~~~G~I~ri~~--~-~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlG 151 (259)
+..|.+++. ++. |. ..|+...+|++..|.. . ...... + + .......+.|-|
T Consensus 127 ~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~---------~-l------------VR~f~lgsq~Eg 184 (355)
T 3amr_A 127 INEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISG---------K-K------------VRAFKMNSQTEG 184 (355)
T ss_dssp CSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEE---------E-E------------EEEEECSSCEEE
T ss_pred CCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccc---------e-E------------EEEecCCCCcce
Confidence 578899998 774 43 3677888898877543 1 111111 0 0 011233567889
Q ss_pred EEEeCCCCcEEEEeCCCceEEEE--CCCCeEEEeeecCCCCCcc-ccccEEEc--CCCc--EEEecCC
Q 039124 152 LRFNKDTGDLYIADAYYGLLVVG--SKGGLATPLATQAGGKPIL-FANDLDVH--KNGS--IFFTDTS 212 (259)
Q Consensus 152 l~~d~~~G~L~VaD~~~Gl~~v~--~~gg~~~~l~~~~~g~pl~-~~Ndl~vd--~dG~--IyfTDss 212 (259)
+++|..+|.|||++-..||++++ ++++....++..+.+..+. -+.+|++. ++|+ +++|+-.
T Consensus 185 cvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG 252 (355)
T 3amr_A 185 MAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG 252 (355)
T ss_dssp EEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred EEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC
Confidence 99998789999999999999999 5553222333344444444 67899994 4444 8888744
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0025 Score=62.69 Aligned_cols=126 Identities=16% Similarity=0.189 Sum_probs=77.4
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcE
Q 039124 82 PESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDL 161 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L 161 (259)
-.+++.|.+|+ +|+++ ++.|.++++++..+..+...... . ......-..|..|+ +|+|
T Consensus 375 v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~~~~~~~~~--~-----------------~~~~~~v~~i~~d~-~g~l 432 (758)
T 3ott_A 375 IRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFIHYNIVDNT--G-----------------TYNTNWTYYIFEDT-AGQL 432 (758)
T ss_dssp EEEEEECTTSC-EEEEE-TTEEEEEETTTTEEEEEEEECCC---------------------CBSSSEEEEEECT-TSEE
T ss_pred eEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEEEeecCCCc--C-----------------CCCCceEEEEEEcC-CCCE
Confidence 35788898998 77777 45799999877645444321100 0 00112345778888 4999
Q ss_pred EEEeCCCceEEEECCC------CeEE--EeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceE
Q 039124 162 YIADAYYGLLVVGSKG------GLAT--PLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRL 233 (259)
Q Consensus 162 ~VaD~~~Gl~~v~~~g------g~~~--~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL 233 (259)
||+-...||+++++++ +... ......++.+-...+.+..|++|+||+..++. +.|
T Consensus 433 WigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~-----------------~Gl 495 (758)
T 3ott_A 433 WISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNN-----------------KGI 495 (758)
T ss_dssp EEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTC-----------------SSE
T ss_pred EEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCC-----------------CCc
Confidence 9987667999999753 2111 01112233344567889999999999922111 137
Q ss_pred EEEeCCCCcEEEe
Q 039124 234 LRYDPPTKSNSYC 246 (259)
Q Consensus 234 ~rydp~tg~~~vl 246 (259)
++||+++++.+.+
T Consensus 496 ~~~d~~~~~~~~~ 508 (758)
T 3ott_A 496 DKINPRTREVTKL 508 (758)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEeCCCCceEEe
Confidence 7777776666554
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0032 Score=60.02 Aligned_cols=104 Identities=9% Similarity=-0.049 Sum_probs=68.5
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeC--CCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC--
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMG--ENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK-- 156 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~--~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~-- 156 (259)
.|.+++++++|+.+|++..++.|..|+. .... ... ....+..|.+++|++
T Consensus 180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~--~~~------------------------~i~~g~~p~~va~sp~~ 233 (543)
T 1nir_A 180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT--KVA------------------------EIKIGIEARSVESSKFK 233 (543)
T ss_dssp TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE--EEE------------------------EEECCSEEEEEEECCST
T ss_pred ccceEEECCCCCEEEEECCCCeEEEEECcCCCCc--EEE------------------------EEecCCCcceEEeCCCc
Confidence 3899999999999999999999999998 4331 100 011245689999998
Q ss_pred --CCCcEEEEeCC-CceEEEECCCCeEEEeeec----CCC---CCccccccEEEcCCCc-EEEec
Q 039124 157 --DTGDLYIADAY-YGLLVVGSKGGLATPLATQ----AGG---KPILFANDLDVHKNGS-IFFTD 210 (259)
Q Consensus 157 --~~G~L~VaD~~-~Gl~~v~~~gg~~~~l~~~----~~g---~pl~~~Ndl~vd~dG~-IyfTD 210 (259)
++..|||++.. ..+..+|.++++....+.. .++ .+-..+..++++++|. +|++.
T Consensus 234 ~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 234 GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred CCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 74567888753 4477779887754333221 111 1222567888888765 55554
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.002 Score=58.86 Aligned_cols=90 Identities=14% Similarity=0.103 Sum_probs=66.3
Q ss_pred Ccce---EEEeCCCCcEEEEeC---C------CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCC
Q 039124 148 RPLG---LRFNKDTGDLYIADA---Y------YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKR 214 (259)
Q Consensus 148 rPlG---l~~d~~~G~L~VaD~---~------~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~ 214 (259)
+|.| ++++++.+.+||+.. . .++..||.++.+. +. .+.- -..|+++++++||+ +|++...
T Consensus 262 ~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v--v~-~i~v--g~~p~gi~~s~Dg~~l~va~~~-- 334 (368)
T 1mda_H 262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT--SG-PISN--GHDSDAIIAAQDGASDNYANSA-- 334 (368)
T ss_dssp EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE--EE-CCEE--EEEECEEEECCSSSCEEEEEET--
T ss_pred ccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE--EE-EEEC--CCCcceEEECCCCCEEEEEccC--
Confidence 5666 788987678999764 2 3678999988753 22 2211 12699999999997 8888641
Q ss_pred CCcccceeeeeccCCCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 215 YNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 215 ~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
.++.|..+|.+|+++..-+.--..|.|+++
T Consensus 335 --------------~~~~VsVID~~t~kvv~~I~vg~~P~~i~~ 364 (368)
T 1mda_H 335 --------------GTEVLDIYDAASDQDQSSVELDKGPESLSV 364 (368)
T ss_dssp --------------TTTEEEEEESSSCEEEEECCCCSCCCEEEC
T ss_pred --------------CCCeEEEEECCCCcEEEEEECCCCCCEEEe
Confidence 246899999999988877777788999876
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.012 Score=53.55 Aligned_cols=121 Identities=12% Similarity=0.074 Sum_probs=75.6
Q ss_pred CceeEEEcCCCCEE-EEEcCCC--eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 81 GPESLEFDGLGRGP-YTGLADG--RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 81 gPE~ia~D~~G~~~-yt~~~~G--~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
...+++|.++|+.+ |++..+| .|+.++..+.....+ ....+....++|.++
T Consensus 224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l--------------------------~~~~~~~~~~~~spd 277 (415)
T 2hqs_A 224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV--------------------------TDGRSNNTEPTWFPD 277 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC--------------------------CCCSSCEEEEEECTT
T ss_pred cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeC--------------------------cCCCCcccceEECCC
Confidence 45689999999844 4666554 499998866532110 111233467899995
Q ss_pred CCcE-EEEeCCC---ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCce
Q 039124 158 TGDL-YIADAYY---GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGR 232 (259)
Q Consensus 158 ~G~L-~VaD~~~---Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~Gr 232 (259)
|+. +++.... .|+.++.++++.+.+... + .....+++++||+ |+++... ...+.
T Consensus 278 -g~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~--~---~~~~~~~~spdG~~l~~~~~~---------------~g~~~ 336 (415)
T 2hqs_A 278 -SQNLAFTSDQAGRPQVYKVNINGGAPQRITWE--G---SQNQDADVSSDGKFMVMVSSN---------------GGQQH 336 (415)
T ss_dssp -SSEEEEEECTTSSCEEEEEETTSSCCEECCCS--S---SEEEEEEECTTSSEEEEEEEC---------------SSCEE
T ss_pred -CCEEEEEECCCCCcEEEEEECCCCCEEEEecC--C---CcccCeEECCCCCEEEEEECc---------------CCceE
Confidence 764 4333222 488999998875554321 1 2456889999998 5555432 12357
Q ss_pred EEEEeCCCCcEEEecC
Q 039124 233 LLRYDPPTKSNSYCVR 248 (259)
Q Consensus 233 L~rydp~tg~~~vl~~ 248 (259)
|+.+|.++++.+.+..
T Consensus 337 i~~~d~~~~~~~~l~~ 352 (415)
T 2hqs_A 337 IAKQDLATGGVQVLSS 352 (415)
T ss_dssp EEEEETTTCCEEECCC
T ss_pred EEEEECCCCCEEEecC
Confidence 8888888777766544
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.015 Score=53.01 Aligned_cols=120 Identities=12% Similarity=0.019 Sum_probs=74.7
Q ss_pred CCceeEEEcCCCCEEEEEcCC---CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 80 FGPESLEFDGLGRGPYTGLAD---GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~---G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
....+++|.++|+.+++...+ ..|+.++..+.....+ ....+....++|.+
T Consensus 179 ~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l--------------------------~~~~~~~~~~~~sp 232 (415)
T 2hqs_A 179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV--------------------------ASFPRHNGAPAFSP 232 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE--------------------------ECCSSCEEEEEECT
T ss_pred CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEe--------------------------ecCCCcccCEEEcC
Confidence 456789999999866655554 3899998876532211 01123456889999
Q ss_pred CCCc-EEEEeCC---CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCc
Q 039124 157 DTGD-LYIADAY---YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTG 231 (259)
Q Consensus 157 ~~G~-L~VaD~~---~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~G 231 (259)
+ |+ |+++... ..|+.+|.++++...+... . .....+++++||+ |+++... ....
T Consensus 233 d-g~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~-~----~~~~~~~~spdg~~l~~~s~~---------------~g~~ 291 (415)
T 2hqs_A 233 D-GSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-R----SNNTEPTWFPDSQNLAFTSDQ---------------AGRP 291 (415)
T ss_dssp T-SSEEEEEECTTSSCEEEEEETTTCCEEECCCC-S----SCEEEEEECTTSSEEEEEECT---------------TSSC
T ss_pred C-CCEEEEEEecCCCceEEEEECCCCCEEeCcCC-C----CcccceEECCCCCEEEEEECC---------------CCCc
Confidence 5 76 4434332 2389999998876555321 1 2467889999998 6665421 1123
Q ss_pred eEEEEeCCCCcEEEe
Q 039124 232 RLLRYDPPTKSNSYC 246 (259)
Q Consensus 232 rL~rydp~tg~~~vl 246 (259)
+|+.+|..+++.+.+
T Consensus 292 ~i~~~d~~~~~~~~l 306 (415)
T 2hqs_A 292 QVYKVNINGGAPQRI 306 (415)
T ss_dssp EEEEEETTSSCCEEC
T ss_pred EEEEEECCCCCEEEE
Confidence 677777776665544
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0053 Score=57.25 Aligned_cols=117 Identities=10% Similarity=-0.086 Sum_probs=73.3
Q ss_pred eEEccCCCCCceeEEEcCCCCEEEEEc----------CCCeEEEEeCCCccEEE-EEEeecCccccccccCccccccccc
Q 039124 72 KLEFVDEVFGPESLEFDGLGRGPYTGL----------ADGRIVRWMGENVGWET-FAIVTSNWSEKLCARGVDSTTAKQW 140 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~G~~~yt~~----------~~G~I~ri~~~~~~~~~-fa~~~~~~~~~~~~g~~~~~~~~~~ 140 (259)
..+-.| ..| +++++++|+.+|+.. .++.|..|+........ +.... +
T Consensus 113 ~~I~vG--~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g----------~--------- 170 (426)
T 3c75_H 113 GMTDGG--FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPD----------A--------- 170 (426)
T ss_dssp EEEEEC--SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT----------C---------
T ss_pred EEEECC--CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCC----------c---------
Confidence 334445 468 999999999899886 36789999987653221 11000 0
Q ss_pred cccCcCCCcceEEEeCCCCcEEEEeCC--CceEEEECCCCeEEEeeecCCCCCcccccc----EEEcCCCcEEEecC
Q 039124 141 KHEKWCGRPLGLRFNKDTGDLYIADAY--YGLLVVGSKGGLATPLATQAGGKPILFAND----LDVHKNGSIFFTDT 211 (259)
Q Consensus 141 ~~~~~~grPlGl~~d~~~G~L~VaD~~--~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Nd----l~vd~dG~IyfTDs 211 (259)
.......+|.+++|++++..|||++.. ..|..||.+++++..-+. ..+.....|.+ +++.+||++.+-|.
T Consensus 171 ~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~-v~g~~~~~p~g~~~~v~~~~dG~~~~V~~ 246 (426)
T 3c75_H 171 PRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD-VPDCYHIFPASPTVFYMNCRDGSLARVDF 246 (426)
T ss_dssp CCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCSEEEEEEEETTEEEEEETTSSEEEEEC
T ss_pred cccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE-cCCceeeccCCCcEEEEEcCCCCEEEEEC
Confidence 000124579999999975589999854 459999999875322121 22222334555 77888998555444
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0052 Score=57.90 Aligned_cols=154 Identities=12% Similarity=0.102 Sum_probs=82.5
Q ss_pred CCceeEEE--cCCCCEEEEEc------CCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcce
Q 039124 80 FGPESLEF--DGLGRGPYTGL------ADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLG 151 (259)
Q Consensus 80 ~gPE~ia~--D~~G~~~yt~~------~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlG 151 (259)
.+|..+++ +++|+..|+.. .++.|+.+.-+++.|.......... .+ ..+.. ++ . ...+....+.|.+
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~-~~-v~~~l-p~-~-~~~f~~~~~~pa~ 325 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPA-EP-LEGNL-PE-I-LKPFKAVPPLVTD 325 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECC-EE-CCSSC-CG-G-GGGGTEECCCCCC
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCC-cc-ccccc-cc-c-ccccccCCCceeE
Confidence 46777766 99999889877 4668876654444344322211000 00 00000 00 0 0000011367999
Q ss_pred EEEeCCCCcEEEEeCCCc-eEEEECC-CCeEEEeeec-CCC----------CC-ccccccEEEcCCCc-EEEecCCC-CC
Q 039124 152 LRFNKDTGDLYIADAYYG-LLVVGSK-GGLATPLATQ-AGG----------KP-ILFANDLDVHKNGS-IFFTDTSK-RY 215 (259)
Q Consensus 152 l~~d~~~G~L~VaD~~~G-l~~v~~~-gg~~~~l~~~-~~g----------~p-l~~~Ndl~vd~dG~-IyfTDss~-~~ 215 (259)
|++.+++..|||++...+ |..++.. .+..+.+... ..| .+ ...|.++++++||+ +|+|++-. .|
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNsl~~~w 405 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNSLYSTW 405 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECCCCHHH
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcCCcccc
Confidence 999997557999998876 5555542 3322333211 121 11 12699999999997 99998642 12
Q ss_pred CcccceeeeeccCCCceEEEE--eCCCCcEE
Q 039124 216 NRVDHFFILLEGESTGRLLRY--DPPTKSNS 244 (259)
Q Consensus 216 ~~~~~~~~~~e~~~~GrL~ry--dp~tg~~~ 244 (259)
+.+ | .-...++.++++ |+++| .+
T Consensus 406 d~Q-f----yp~~~~~~~~~~~vd~~~G-L~ 430 (462)
T 2ece_A 406 DNQ-F----YPEGLKGWMVKLNANPSGG-LE 430 (462)
T ss_dssp HHH-H----STTCCCCEEEEEEECTTSC-EE
T ss_pred ccc-c----cCCCCceEEEEEEecCCCC-ce
Confidence 221 1 111344567755 77777 54
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0021 Score=57.65 Aligned_cols=94 Identities=11% Similarity=0.031 Sum_probs=63.9
Q ss_pred CceeEEEcCCCCEEEEEcC-----------CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLA-----------DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~-----------~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
+++.++++++|+.+|+... ++.|+.|+........ .+ ...+ |
T Consensus 255 g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~-----------------------~i---~~~~-p 307 (361)
T 2oiz_A 255 GYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVA-----------------------RI---PGRD-A 307 (361)
T ss_dssp CSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEE-----------------------EE---ECTT-C
T ss_pred CeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEE-----------------------EE---ecCC-e
Confidence 3445899999888898754 3479999987652111 01 1223 9
Q ss_pred ceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeee-cCCCCCccccccEEEcCCCc
Q 039124 150 LGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLAT-QAGGKPILFANDLDVHKNGS 205 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~-~~~g~pl~~~Ndl~vd~dG~ 205 (259)
.+++|+++...||++.. ..|..+|.+++..+.+.. ..-| ..|++++++|||+
T Consensus 308 ~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G---~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 308 LSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAA---EASLQVQFHPVGG 360 (361)
T ss_dssp CEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSC---SSEEEEEECCCSC
T ss_pred eEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCC---CCcEEEEecCCCC
Confidence 99999996446777775 568888999883344433 1123 4799999999985
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.04 Score=46.65 Aligned_cols=100 Identities=11% Similarity=0.038 Sum_probs=64.8
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
-....+++|.++++.++++..+|.|..|+........ ......+....++++++
T Consensus 141 ~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~-------------------------~~~~~~~~i~~~~~~~~- 194 (337)
T 1gxr_A 141 APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR-------------------------QFQGHTDGASCIDISND- 194 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-------------------------EECCCSSCEEEEEECTT-
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee-------------------------eeecccCceEEEEECCC-
Confidence 3445689999999999999999999999986652111 00112344678999985
Q ss_pred CcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 159 GDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 159 G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
|+.+++-...| +...|.++++...... .. .....+++.++|+.+++
T Consensus 195 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~----~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 195 GTKLWTGGLDNTVRSWDLREGRQLQQHD-FT----SQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEE-CS----SCEEEEEECTTSSEEEE
T ss_pred CCEEEEEecCCcEEEEECCCCceEeeec-CC----CceEEEEECCCCCEEEE
Confidence 76655444444 7777988775333222 22 23677888888875554
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.023 Score=48.20 Aligned_cols=104 Identities=12% Similarity=-0.039 Sum_probs=65.9
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
-....+++|.++|+.++++..+|.|..|+.+........ ......+....+++.++
T Consensus 97 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-----------------------~~~~~~~~i~~~~~~~~- 152 (337)
T 1gxr_A 97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA-----------------------ELTSSAPACYALAISPD- 152 (337)
T ss_dssp TSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE-----------------------EEECSSSCEEEEEECTT-
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee-----------------------ecccCCCceEEEEECCC-
Confidence 345668999999999999999999999988765211100 01112234568899985
Q ss_pred CcEEE-EeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 159 GDLYI-ADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 159 G~L~V-aD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
+++++ +.....+..++.++++........ -.....++++++|+.+++-
T Consensus 153 ~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~ 201 (337)
T 1gxr_A 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGH----TDGASCIDISNDGTKLWTG 201 (337)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCC----SSCEEEEEECTTSSEEEEE
T ss_pred CCEEEEEeCCCcEEEEeCCCCceeeeeecc----cCceEEEEECCCCCEEEEE
Confidence 66555 444444778898877533222211 2247789999998765553
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0093 Score=53.41 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=55.4
Q ss_pred eEEEeCCCCcEEEEeC-----------CCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcc
Q 039124 151 GLRFNKDTGDLYIADA-----------YYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRV 218 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~-----------~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~ 218 (259)
.++++++.+.+||+.. ...|..+|.++++. +.. +.... |+++++++||+ +|.+..
T Consensus 258 ~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~--v~~-i~~~~---p~~ia~spdg~~l~v~n~------- 324 (361)
T 2oiz_A 258 LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR--VAR-IPGRD---ALSMTIDQQRNLMLTLDG------- 324 (361)
T ss_dssp CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE--EEE-EECTT---CCEEEEETTTTEEEEECS-------
T ss_pred EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE--EEE-EecCC---eeEEEECCCCCEEEEeCC-------
Confidence 3899986678999854 12488999998753 222 22222 99999999998 665541
Q ss_pred cceeeeeccCCCceEEEEeCCCC--cEEEecCCC-CCcceeEE
Q 039124 219 DHFFILLEGESTGRLLRYDPPTK--SNSYCVRWL-GFSKWSTI 258 (259)
Q Consensus 219 ~~~~~~~e~~~~GrL~rydp~tg--~~~vl~~~L-~~pNGval 258 (259)
+.|..||.+|+ +..--+... ..|+++++
T Consensus 325 ------------~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~ 355 (361)
T 2oiz_A 325 ------------GNVNVYDISQPEPKLLRTIEGAAEASLQVQF 355 (361)
T ss_dssp ------------SCEEEEECSSSSCEEEEEETTSCSSEEEEEE
T ss_pred ------------CeEEEEECCCCcceeeEEeccCCCCcEEEEe
Confidence 46888899988 543332232 47787775
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.013 Score=53.17 Aligned_cols=95 Identities=12% Similarity=-0.050 Sum_probs=59.5
Q ss_pred CCCCEEEEEcC--CC---eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEE
Q 039124 89 GLGRGPYTGLA--DG---RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYI 163 (259)
Q Consensus 89 ~~G~~~yt~~~--~G---~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~V 163 (259)
++++.+|+... .+ .|..|+.+...... ..+.+..| +++++++...|||
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~--------------------------~i~~g~~p-~i~~spDg~~lyv 82 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILG--------------------------HVNGGFLP-NPVAAHSGSEFAL 82 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEE--------------------------EecCCCCC-CeEECCCCCEEEE
Confidence 46666777653 33 78889887552110 01224468 9999997557999
Q ss_pred EeCC----------CceEEEECCCCeEEEeeecCC--CCC--ccccccEEEcCCCc-EEEecC
Q 039124 164 ADAY----------YGLLVVGSKGGLATPLATQAG--GKP--ILFANDLDVHKNGS-IFFTDT 211 (259)
Q Consensus 164 aD~~----------~Gl~~v~~~gg~~~~l~~~~~--g~p--l~~~Ndl~vd~dG~-IyfTDs 211 (259)
++.. ..+..+|.++.+...-+. .. ... ...|.++++++||+ +|+++.
T Consensus 83 ~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~~l~v~n~ 144 (373)
T 2mad_H 83 ASTSFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNADLLFFQF 144 (373)
T ss_pred EeccccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCCEEEEEec
Confidence 9752 237788988754322111 11 111 24688999999997 999864
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.021 Score=47.16 Aligned_cols=120 Identities=11% Similarity=0.009 Sum_probs=71.6
Q ss_pred CCceeEEEcCCCCEEEEEc----CCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 80 FGPESLEFDGLGRGPYTGL----ADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~----~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
....+++|.++|+.+++.. ...+|+.++.++..... + . .......+++.
T Consensus 85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-----------~-------------~---~~~~~~~~~~s 137 (297)
T 2ojh_A 85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRL-----------M-------------T---KNLPSYWHGWS 137 (297)
T ss_dssp CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEE-----------C-------------C---SSSSEEEEEEC
T ss_pred ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEE-----------e-------------e---cCCCccceEEC
Confidence 3456789999998777766 24688888876542111 0 0 11125678899
Q ss_pred CCCCc-EEEEeCCC---ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCC
Q 039124 156 KDTGD-LYIADAYY---GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGEST 230 (259)
Q Consensus 156 ~~~G~-L~VaD~~~---Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~ 230 (259)
++ |+ |+++.... .|+.++.+++....+... ...++.++++++|+ |+++... ...
T Consensus 138 pd-g~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~---------------~~~ 196 (297)
T 2ojh_A 138 PD-GKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG-----EGRNDGPDYSPDGRWIYFNSSR---------------TGQ 196 (297)
T ss_dssp TT-SSEEEEEEEETTEEEEEEEETTTCCEEECCCS-----SSCEEEEEECTTSSEEEEEECT---------------TSS
T ss_pred CC-CCEEEEEECCCCceEEEEEECCCCcceEcccC-----CCccccceECCCCCEEEEEecC---------------CCC
Confidence 85 66 44333222 488888887765544321 12468899999998 6665431 123
Q ss_pred ceEEEEeCCCCcEEEec
Q 039124 231 GRLLRYDPPTKSNSYCV 247 (259)
Q Consensus 231 GrL~rydp~tg~~~vl~ 247 (259)
.+||.++..+++.+.+.
T Consensus 197 ~~i~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 197 MQIWRVRVDGSSVERIT 213 (297)
T ss_dssp CEEEEEETTSSCEEECC
T ss_pred ccEEEECCCCCCcEEEe
Confidence 35666665555554443
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0056 Score=59.50 Aligned_cols=124 Identities=19% Similarity=0.284 Sum_probs=74.8
Q ss_pred CCCCCceeEEEcC-CCCEEEEEc---------------------CCCeEEEEeCCCc-------cEEEEEEeecCcccc-
Q 039124 77 DEVFGPESLEFDG-LGRGPYTGL---------------------ADGRIVRWMGENV-------GWETFAIVTSNWSEK- 126 (259)
Q Consensus 77 ~~l~gPE~ia~D~-~G~~~yt~~---------------------~~G~I~ri~~~~~-------~~~~fa~~~~~~~~~- 126 (259)
-.+..||++.+++ +|.+|++-+ ..|.|+|+.+++. .|..|..........
T Consensus 381 T~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~ 460 (592)
T 3zwu_A 381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG 460 (592)
T ss_dssp CCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred EEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccc
Confidence 3578999999997 677555433 2378999986543 244443322110000
Q ss_pred ccccCccccccccccccCcCCCcceEEEeCCCCcEEEE-eCC------------CceEEEECCCCeEEEeeecCCCCCcc
Q 039124 127 LCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIA-DAY------------YGLLVVGSKGGLATPLATQAGGKPIL 193 (259)
Q Consensus 127 ~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~Va-D~~------------~Gl~~v~~~gg~~~~l~~~~~g~pl~ 193 (259)
...+.. ...........|=+|+|++. |+|||| |.. +.++..++.+|++..++....|.
T Consensus 461 ~~~~~~-----~~~~~~~~f~~PDNL~fd~~-G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~ga--- 531 (592)
T 3zwu_A 461 TPKGGS-----SNITPQNMFNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGC--- 531 (592)
T ss_dssp SGGGCC-----TTCCTTTCCCCEEEEEECTT-CCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTC---
T ss_pred cccccc-----cccCCCCCccCCcceEECCC-CCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCc---
Confidence 000000 00011234567899999995 999997 432 13778889988888877643332
Q ss_pred ccccEEEcCCCc-EEEe
Q 039124 194 FANDLDVHKNGS-IFFT 209 (259)
Q Consensus 194 ~~Ndl~vd~dG~-IyfT 209 (259)
=.-++++++||+ +|+.
T Consensus 532 E~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 532 EVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEEECTTSSEEEEE
T ss_pred cCcCeeECCCCCEEEEE
Confidence 356889999997 6665
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.03 Score=50.65 Aligned_cols=89 Identities=16% Similarity=0.204 Sum_probs=59.8
Q ss_pred Ccce---EEEeCCCCcEEEEeC----------CCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc--EEEecCC
Q 039124 148 RPLG---LRFNKDTGDLYIADA----------YYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS--IFFTDTS 212 (259)
Q Consensus 148 rPlG---l~~d~~~G~L~VaD~----------~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~--IyfTDss 212 (259)
+|.| ++++++.+.|||+.. ...|..||.+++++..-+ ...+ .|+++++++||+ +|++..
T Consensus 265 ~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i-~~g~----~p~~i~~s~Dg~~~l~v~~~- 338 (373)
T 2mad_H 265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI-SLGH----DVDAISVAQDGGPDLYALSA- 338 (373)
T ss_pred ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEE-ECCC----CcCeEEECCCCCeEEEEEcC-
Confidence 4666 788987678999753 124999999987542211 1222 589999999998 444432
Q ss_pred CCCCcccceeeeeccCCCceEEEEeCCCCcEEEecCC-CCCcceeEE
Q 039124 213 KRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRW-LGFSKWSTI 258 (259)
Q Consensus 213 ~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~~-L~~pNGval 258 (259)
.++.|..||.+|+++...+.. =..|+++..
T Consensus 339 ----------------~~~~V~ViD~~t~~vv~~i~~vG~~P~~~~~ 369 (373)
T 2mad_H 339 ----------------GTEVLHIYDAGAGDQDQSTVELGSGPQVLSV 369 (373)
T ss_pred ----------------CCCeEEEEECCCCCEEeeecCCCCCCcEEEE
Confidence 236899999998887655222 246888764
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0061 Score=59.91 Aligned_cols=101 Identities=14% Similarity=0.059 Sum_probs=63.3
Q ss_pred ceeEEEcCCCCEEEE--EcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 82 PESLEFDGLGRGPYT--GLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 82 PE~ia~D~~G~~~yt--~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
..++..|++|+ +|. +.. +.|.++++....+..+. .. . ......+..+..|+ +|
T Consensus 474 i~~i~~d~~g~-lWi~~~t~-~Gl~~~d~~~~~~~~~~---~~--~-----------------~~~~~~~~~i~~d~-~g 528 (758)
T 3ott_A 474 INQIIPDNEGN-VWVLLYNN-KGIDKINPRTREVTKLF---AD--E-----------------LTGEKSPNYLLCDE-DG 528 (758)
T ss_dssp EEEEEECTTSC-EEEEETTC-SSEEEEETTTTEEEEEC---TT--T-----------------SCGGGCEEEEEECT-TS
T ss_pred eeeEEEcCCCC-EEEEccCC-CCcEEEeCCCCceEEec---CC--C-----------------cCCCcccceEEECC-CC
Confidence 45688899999 565 555 45999998765333320 00 0 00112456888898 59
Q ss_pred cEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 160 DLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 160 ~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
+||++- ..||.+++++++..+.+. .++.+-.....+..+ +|+||++..
T Consensus 529 ~lWigt-~~Gl~~~~~~~~~~~~~~--~~gl~~~~i~~i~~~-~g~lWi~t~ 576 (758)
T 3ott_A 529 LLWVGF-HGGVMRINPKDESQQSIS--FGSFSNNEILSMTCV-KNSIWVSTT 576 (758)
T ss_dssp CEEEEE-TTEEEEECC--CCCCBCC--CCC---CCEEEEEEE-TTEEEEEES
T ss_pred CEEEEe-cCceEEEecCCCceEEec--ccCCCccceEEEEEC-CCCEEEECC
Confidence 999985 469999999887654442 245455566677665 899999864
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.021 Score=54.87 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=38.9
Q ss_pred CcceEEEeCCCCc-EEEEeCCC-----ceEEEECCCC-eEEEeeecCCCCCccccccEEEcC--CCcEEEec
Q 039124 148 RPLGLRFNKDTGD-LYIADAYY-----GLLVVGSKGG-LATPLATQAGGKPILFANDLDVHK--NGSIFFTD 210 (259)
Q Consensus 148 rPlGl~~d~~~G~-L~VaD~~~-----Gl~~v~~~gg-~~~~l~~~~~g~pl~~~Ndl~vd~--dG~IyfTD 210 (259)
.+..++|.++ |+ |+++.... .|+.+|.+++ ..+.+..+....-....+++++.+ ||+++++-
T Consensus 259 ~~~~~~~spd-g~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~ 329 (706)
T 2z3z_A 259 FLTNLSWSPD-ENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQS 329 (706)
T ss_dssp EEEEEEECTT-SSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEE
T ss_pred eEeeEEEECC-CCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEE
Confidence 3567899995 76 55543322 4888899988 555555432222222357889999 99855543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.017 Score=50.69 Aligned_cols=138 Identities=14% Similarity=0.043 Sum_probs=77.8
Q ss_pred EEEcCCCCE-EEEEcCCC--eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc-ceEEEeCCCCc
Q 039124 85 LEFDGLGRG-PYTGLADG--RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP-LGLRFNKDTGD 160 (259)
Q Consensus 85 ia~D~~G~~-~yt~~~~G--~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP-lGl~~d~~~G~ 160 (259)
++|.++|+. +|+...+| .|+.++.++..... +. ...+.. .+.++.+++..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-----------lt---------------~~~~~~~~~~~~spdg~~ 94 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-----------LT---------------EGRGDNTFGGFLSPDDDA 94 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-----------CC---------------CSSCBCSSSCEECTTSSE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-----------ee---------------eCCCCCccceEEcCCCCE
Confidence 678899984 45554466 59999987652211 00 111122 36789995334
Q ss_pred EEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC--CCCCc-cc--ceeeeeccCCCceEEE
Q 039124 161 LYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS--KRYNR-VD--HFFILLEGESTGRLLR 235 (259)
Q Consensus 161 L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss--~~~~~-~~--~~~~~~e~~~~GrL~r 235 (259)
|+++.....|+.+|.++++.+.+.....+ ........+++||+.++.-.. ..+.. .+ .+.........++|+.
T Consensus 95 l~~~~~~~~l~~~d~~~g~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 95 LFYVKDGRNLMRVDLATLEENVVYQVPAE--WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp EEEEETTTEEEEEETTTCCEEEEEECCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred EEEEeCCCeEEEEECCCCcceeeeechhh--cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 66666556799999999876665542221 111122345888886653110 00100 00 0111233456689999
Q ss_pred EeCCCCcEEEecCCC
Q 039124 236 YDPPTKSNSYCVRWL 250 (259)
Q Consensus 236 ydp~tg~~~vl~~~L 250 (259)
+|..+|+.+.+...-
T Consensus 173 ~d~~~g~~~~l~~~~ 187 (388)
T 3pe7_A 173 VDLKTGESTVILQEN 187 (388)
T ss_dssp EETTTCCEEEEEEES
T ss_pred EECCCCceEEeecCC
Confidence 999999888876543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.015 Score=55.34 Aligned_cols=138 Identities=11% Similarity=-0.061 Sum_probs=77.4
Q ss_pred eEEccCCCCCceeEEEcCCCCEEEEEcCCC--eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 72 KLEFVDEVFGPESLEFDGLGRGPYTGLADG--RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G--~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
+.+..+.-....+++|.++|+++|++..+| +|++++.++..+..+. .... . .. . ..|. -..
T Consensus 234 ~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~--~~~~-~--~~----~---p~w~-----~~~ 296 (662)
T 3azo_A 234 RTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLC--RREE-E--FA----G---PLWT-----PGM 296 (662)
T ss_dssp EEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESS--CCSS-B--SS----C---CCCS-----TTC
T ss_pred EEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecc--cccc-c--cc----C---cccc-----ccC
Confidence 344443335667899999999888888888 8999987554333210 0000 0 00 0 0010 012
Q ss_pred ceEEEeCCCCcEEEEeCC--CceEEEECCCCeEEEeeecCCCCCccccccE-EEcCCCcEEEecCCCCCCcccceeeeec
Q 039124 150 LGLRFNKDTGDLYIADAY--YGLLVVGSKGGLATPLATQAGGKPILFANDL-DVHKNGSIFFTDTSKRYNRVDHFFILLE 226 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~--~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl-~vd~dG~IyfTDss~~~~~~~~~~~~~e 226 (259)
..+++.+ +|.++++-.. ..|+.++.++++.+.+... . .....+ +.+.+ .++|+-++.
T Consensus 297 ~~~~~~~-~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~----~~~~~~~s~~~~-~~~~~~~~~------------- 356 (662)
T 3azo_A 297 RWFAPLA-NGLIAVVHGKGAAVLGILDPESGELVDAAGP-W----TEWAATLTVSGT-RAVGVAASP------------- 356 (662)
T ss_dssp CSEEECT-TSCEEEEEBSSSCEEEEEETTTTEEEECCSS-C----CEEEEEEEEETT-EEEEEEEET-------------
T ss_pred ceEeEeC-CCEEEEEEEcCccEEEEEECCCCcEEEecCC-C----CeEEEEEecCCC-EEEEEEcCC-------------
Confidence 4578877 4788765443 2388889988876655322 1 123445 44433 344443321
Q ss_pred cCCCceEEEEeCCCCcEEEec
Q 039124 227 GESTGRLLRYDPPTKSNSYCV 247 (259)
Q Consensus 227 ~~~~GrL~rydp~tg~~~vl~ 247 (259)
....+||++|.++++.+.+.
T Consensus 357 -~~~~~i~~~d~~~g~~~~l~ 376 (662)
T 3azo_A 357 -RTAYEVVELDTVTGRARTIG 376 (662)
T ss_dssp -TEEEEEEEEETTTCCEEEEE
T ss_pred -CCCCEEEEEECCCCceEEee
Confidence 23457888888878777664
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.012 Score=56.14 Aligned_cols=123 Identities=13% Similarity=0.004 Sum_probs=75.9
Q ss_pred CceeEEEcCCCCEEEEEcCC----------CeEEEEeCCC------ccEEEEEEeecCccccccccCccccccccccccC
Q 039124 81 GPESLEFDGLGRGPYTGLAD----------GRIVRWMGEN------VGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEK 144 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~----------G~I~ri~~~~------~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~ 144 (259)
...+++|.++|+.+++...+ .+|++++.++ ..... + . +.
T Consensus 131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------l-------------~-~~ 185 (662)
T 3azo_A 131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE-----------L-------------S-DD 185 (662)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE-----------S-------------S-CS
T ss_pred cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE-----------E-------------E-ec
Confidence 35678999999867655444 4788888766 32111 0 0 01
Q ss_pred cCCCcceEEEeCCCCc-EEEEeCC--------CceEEEECC-CC---eEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 145 WCGRPLGLRFNKDTGD-LYIADAY--------YGLLVVGSK-GG---LATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 145 ~~grPlGl~~d~~~G~-L~VaD~~--------~Gl~~v~~~-gg---~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
..+...++++.++ |+ |+++... ..|+.++.+ +| +.+.+..... .....++..+||++||+..
T Consensus 186 ~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~----~~~~~~~~spdg~l~~~~~ 260 (662)
T 3azo_A 186 AHRFVTGPRLSPD-GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE----EAIAQAEWAPDGSLIVATD 260 (662)
T ss_dssp CSSEECCCEECTT-SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT----BCEEEEEECTTSCEEEEEC
T ss_pred CCCcccCceECCC-CCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC----ceEcceEECCCCeEEEEEC
Confidence 1223457889995 76 4333322 248888887 46 4555543211 2456889999999888754
Q ss_pred CCCCCcccceeeeeccCCCceEEEEeCCCCcEEEecC
Q 039124 212 SKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVR 248 (259)
Q Consensus 212 s~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~ 248 (259)
.. ...+|+++|+++++.+.+..
T Consensus 261 ~~---------------~~~~l~~~~~~~~~~~~l~~ 282 (662)
T 3azo_A 261 RT---------------GWWNLHRVDPATGAATQLCR 282 (662)
T ss_dssp TT---------------SSCEEEEECTTTCCEEESSC
T ss_pred CC---------------CCeEEEEEECCCCceeeccc
Confidence 21 23479999987787776654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.04 Score=49.87 Aligned_cols=104 Identities=22% Similarity=0.226 Sum_probs=64.8
Q ss_pred ceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 82 PESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 82 PE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
=.+++|.| +++++.++..||.|..|+.+......+ .......+.-.+|+|.+.+++
T Consensus 122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~-----------------------~~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF-----------------------IKGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE-----------------------ECCCSSSCCCCEEEECSSCTT
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE-----------------------EEccCCCCCEEEEEEeCCCCC
Confidence 35899998 677889999999999998764421110 011111233468999964577
Q ss_pred EEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 161 LYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 161 L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
++++-+..| |...|.+++..+.+... +. .......++++++|.+.++-
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~g 227 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNILRVFASS-DT-INIWFCSLDVSASSRMVVTG 227 (435)
T ss_dssp EEEEECSSSCEEEEETTSCEEEEEECC-SS-CSCCCCCEEEETTTTEEEEE
T ss_pred EEEEEeCCCEEEEeeccCCceeEEecc-CC-CCccEEEEEECCCCCEEEEE
Confidence 776655556 55568888765554432 11 12245678888888766553
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0016 Score=55.99 Aligned_cols=126 Identities=17% Similarity=0.095 Sum_probs=77.0
Q ss_pred CCC-cccCCCeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCcccccccccc
Q 039124 63 DNL-SRLVTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWK 141 (259)
Q Consensus 63 ~~n-~~L~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~ 141 (259)
..| +-+.++.++..+.+..-.+++++++|. +|+- .+|.++++++....-..+... ...+..++ |.
T Consensus 23 ~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s----~t~IG~~G--------w~ 88 (236)
T 1tl2_A 23 NKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGR----AKKIGNGG--------WN 88 (236)
T ss_dssp STTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHH----CEEEECSC--------GG
T ss_pred CcccchhhhccccCccccccceeEEECCCcc-EEEE-eCCeEEEECCCCCCccccccc----ccEecccc--------cc
Confidence 344 446889999998788899999999988 6766 899999998754210000000 00010001 11
Q ss_pred ccCcCCCcceEEEeCCCCcEEEEeCCCceEEEECCC-CeEEEeee--cCCCCCccccccEEEcCCCcEEEec
Q 039124 142 HEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKG-GLATPLAT--QAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 142 ~~~~~grPlGl~~d~~~G~L~VaD~~~Gl~~v~~~g-g~~~~l~~--~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
+ =..+.||+ +|.||++ ....|+|+++-+ +....+.+ .+....-+-...|.++++|.||.-+
T Consensus 89 -----~-F~a~~fD~-~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 89 -----Q-FQFLFFDP-NGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp -----G-CSEEEECT-TSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred -----c-ceEEEECC-CCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 1 14689999 5999988 444489998622 22221211 1111122345889999999999776
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=96.88 E-value=0.1 Score=44.32 Aligned_cols=107 Identities=11% Similarity=0.076 Sum_probs=67.9
Q ss_pred ccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 75 FVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 75 ~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
+.+.-..-.+++|.++|+.++++..+|.|..|+......... .....+....++|
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~-------------------------~~~h~~~v~~~~~ 73 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-------------------------ISGHKLGISDVAW 73 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-------------------------ECCCSSCEEEEEE
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh-------------------------hccCCCceEEEEE
Confidence 344445667899999999999999999999998765422210 0111223468999
Q ss_pred eCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 155 NKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 155 d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
.++ |+++++-...| |...|.++++........ -.....+++.++|+..+|-+
T Consensus 74 ~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~ 126 (312)
T 4ery_A 74 SSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGS 126 (312)
T ss_dssp CTT-SSEEEEEETTSEEEEEETTTCCEEEEEECC----SSCEEEEEECSSSSEEEEEE
T ss_pred cCC-CCEEEEECCCCEEEEEECCCCcEEEEEcCC----CCCEEEEEEcCCCCEEEEEe
Confidence 995 77776655555 556687776533222211 12467788888887666543
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.095 Score=45.56 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=66.9
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
..-.+++|.++|+.+.++..+|.|..|+........ . .....+....++|.++ |
T Consensus 165 ~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~-~------------------------~~~h~~~v~~l~~spd-~ 218 (321)
T 3ow8_A 165 KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH-T------------------------LEGHAMPIRSLTFSPD-S 218 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-E------------------------ECCCSSCCCEEEECTT-S
T ss_pred ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE-E------------------------EcccCCceeEEEEcCC-C
Confidence 345689999999999999999999999986552111 0 0111223468999994 8
Q ss_pred cEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 160 DLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 160 ~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
.++++-...| |...|.+++..... ..+. -.....+++.++|...+|-+
T Consensus 219 ~~l~s~s~dg~i~iwd~~~~~~~~~---~~~h-~~~v~~~~~sp~~~~l~s~s 267 (321)
T 3ow8_A 219 QLLVTASDDGYIKIYDVQHANLAGT---LSGH-ASWVLNVAFCPDDTHFVSSS 267 (321)
T ss_dssp CEEEEECTTSCEEEEETTTCCEEEE---ECCC-SSCEEEEEECTTSSEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCcceeEE---EcCC-CCceEEEEECCCCCEEEEEe
Confidence 8777655555 66668776643222 2221 23567899999998776644
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0071 Score=55.72 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=57.9
Q ss_pred CcceEEEeCCCCcEEEEeCC-------------Cc---eEEEECCCC--eE-EEee--ecCCCCCccccccEEEc-C---
Q 039124 148 RPLGLRFNKDTGDLYIADAY-------------YG---LLVVGSKGG--LA-TPLA--TQAGGKPILFANDLDVH-K--- 202 (259)
Q Consensus 148 rPlGl~~d~~~G~L~VaD~~-------------~G---l~~v~~~gg--~~-~~l~--~~~~g~pl~~~Ndl~vd-~--- 202 (259)
...++++|+ .|+|||.|.+ .+ |+.+|.+++ ++ +.+. .+.- .+-.+.||++|| .
T Consensus 88 sV~~v~iD~-~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~-~~~S~l~di~VD~~~~~ 165 (381)
T 3q6k_A 88 SIYQPVIDD-CRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLV-EKPTYFGGFAVDVANPK 165 (381)
T ss_dssp CEEEEEECT-TCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGC-CCGGGEEEEEEEESCTT
T ss_pred EeeEEEEcC-CCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhc-ccCCccceEEEecccCC
Confidence 467999999 5999999976 22 889999987 43 2222 1111 234689999999 2
Q ss_pred ----CCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEEecCCCCCc
Q 039124 203 ----NGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWLGFS 253 (259)
Q Consensus 203 ----dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L~~p 253 (259)
++.+|+||+.. +.|+.||..+++...+.+....|
T Consensus 166 ~~c~~~~aYItD~~~-----------------~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 166 GDCSETFVYITNFLR-----------------GALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp TTSCSEEEEEEETTT-----------------TEEEEEETTTTEEEEEECGGGSC
T ss_pred CCCCccEEEEEcCCC-----------------CcEEEEECCCCcEEEEccCCCcc
Confidence 46699999852 25666676666655554443333
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.082 Score=45.99 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=67.4
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
....+++|.++|+.+.++..+|.|..|+...... .+.. .........++|.++ |
T Consensus 123 ~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-~~~~------------------------~~~~~~v~~~~~spd-g 176 (321)
T 3ow8_A 123 VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-EYSL------------------------DTRGKFILSIAYSPD-G 176 (321)
T ss_dssp TCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-EEEE------------------------ECSSSCEEEEEECTT-S
T ss_pred ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-eEEe------------------------cCCCceEEEEEECCC-C
Confidence 3445789999999999999999999998765421 1111 111223468999995 8
Q ss_pred cEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 160 DLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 160 ~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
+++++-...| |...|.++++.... ..+. -...+.++++++|++.+|-+.
T Consensus 177 ~~lasg~~dg~i~iwd~~~~~~~~~---~~~h-~~~v~~l~~spd~~~l~s~s~ 226 (321)
T 3ow8_A 177 KYLASGAIDGIINIFDIATGKLLHT---LEGH-AMPIRSLTFSPDSQLLVTASD 226 (321)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEE---ECCC-SSCCCEEEECTTSCEEEEECT
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEE---Eccc-CCceeEEEEcCCCCEEEEEcC
Confidence 8776655555 66668887753222 2221 124688999999987776543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.034 Score=53.64 Aligned_cols=139 Identities=11% Similarity=-0.020 Sum_probs=76.2
Q ss_pred CCceeEEEcCCCCEEEEEcC-CC-----eEEEEeCCCccEEEEEEeecCccccccccCcccccccccc-ccCcC--CCcc
Q 039124 80 FGPESLEFDGLGRGPYTGLA-DG-----RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWK-HEKWC--GRPL 150 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~-~G-----~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~--grPl 150 (259)
..+.+++|.++|+.+++... +| .|+.|+.++....... ..... . . ++..-+...+... ..+.. ....
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVV-L-P-GTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGT-C----------------------CCEESC
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhc-c-c-ccccccchhhhhhhhhhhccccCcc
Confidence 45778999999997776665 77 8999998765333211 00000 0 0 0000000000000 00000 1135
Q ss_pred eEEEeCCCCcEEEEeCCCceEEEECCCC---eEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeec
Q 039124 151 GLRFNKDTGDLYIADAYYGLLVVGSKGG---LATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLE 226 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~Gl~~v~~~gg---~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e 226 (259)
.++|.++ |+.++.-....|+.++.+++ ..+.+... . .....++++|||+ |+|+..
T Consensus 113 ~~~~SpD-g~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~-~----~~~~~~~~SPDG~~la~~~~--------------- 171 (741)
T 2ecf_A 113 DYQWSPD-AQRLLFPLGGELYLYDLKQEGKAAVRQLTHG-E----GFATDAKLSPKGGFVSFIRG--------------- 171 (741)
T ss_dssp CCEECTT-SSEEEEEETTEEEEEESSSCSTTSCCBCCCS-S----SCEEEEEECTTSSEEEEEET---------------
T ss_pred eeEECCC-CCEEEEEeCCcEEEEECCCCCcceEEEcccC-C----cccccccCCCCCCEEEEEeC---------------
Confidence 7899995 77544333355888898887 55444321 1 2467899999998 555531
Q ss_pred cCCCceEEEEeCCCCcEEEec
Q 039124 227 GESTGRLLRYDPPTKSNSYCV 247 (259)
Q Consensus 227 ~~~~GrL~rydp~tg~~~vl~ 247 (259)
+.|+.+|..+++...+.
T Consensus 172 ----~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 172 ----RNLWVIDLASGRQMQLT 188 (741)
T ss_dssp ----TEEEEEETTTTEEEECC
T ss_pred ----CcEEEEecCCCCEEEec
Confidence 25777777776665543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.12 Score=44.96 Aligned_cols=104 Identities=11% Similarity=0.023 Sum_probs=67.0
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
..-.+++|.++++.++++..||.|..|+........ ......+....++|.++ |
T Consensus 185 ~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~-------------------------~~~~h~~~v~~v~~~p~-~ 238 (340)
T 1got_B 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ-------------------------TFTGHESDINAICFFPN-G 238 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE-------------------------EECCCSSCEEEEEECTT-S
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEE-------------------------EEcCCcCCEEEEEEcCC-C
Confidence 445689999999999999999999999976542111 00111234568999994 8
Q ss_pred cEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 160 DLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 160 ~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
+++++-...| |...|..++...... ..+ ........++++++|++.++-+
T Consensus 239 ~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~-~~~~~v~~~~~s~~g~~l~~g~ 289 (340)
T 1got_B 239 NAFATGSDDATCRLFDLRADQELMTY-SHD-NIICGITSVSFSKSGRLLLAGY 289 (340)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEE-CCT-TCCSCEEEEEECTTSSEEEEEE
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEE-ccC-CcccceEEEEECCCCCEEEEEC
Confidence 7777655555 666688776422111 111 1123467889999998777643
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.041 Score=48.22 Aligned_cols=121 Identities=8% Similarity=-0.057 Sum_probs=70.4
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCC-c-ceEEEeCCCCcE
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGR-P-LGLRFNKDTGDL 161 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gr-P-lGl~~d~~~G~L 161 (259)
+++|.++|+.++....++.|+.++.++....... . .+ .+. + ....+++ +|.+
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~-~-----------------------~~-~~~~~~~~~~~~~-dg~~ 138 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY-Q-----------------------VP-AEWVGYGTWVANS-DCTK 138 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-E-----------------------CC-TTEEEEEEEEECT-TSSE
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee-e-----------------------ch-hhcccccceeECC-CCCe
Confidence 5789999987877777889999998765322110 0 00 011 1 1123456 4776
Q ss_pred EEEe-----------------------CCCceEEEECCCCeEEEeeecCCCCCccccccEEEcC-CCc-EEEecCCCCCC
Q 039124 162 YIAD-----------------------AYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHK-NGS-IFFTDTSKRYN 216 (259)
Q Consensus 162 ~VaD-----------------------~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~-IyfTDss~~~~ 216 (259)
+++- ....|+.+|.++++.+.+.... ...++++++| ||+ |.|+.....
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-----~~~~~~~~sp~dg~~l~~~~~~~~-- 211 (388)
T 3pe7_A 139 LVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN-----QWLGHPIYRPYDDSTVAFCHEGPH-- 211 (388)
T ss_dssp EEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES-----SCEEEEEEETTEEEEEEEEECSCT--
T ss_pred eccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC-----ccccccEECCCCCCEEEEEEecCC--
Confidence 6531 1235899999988877775421 2467899999 887 544433210
Q ss_pred cccceeeeeccCCCceEEEEeCCCCcEEEec
Q 039124 217 RVDHFFILLEGESTGRLLRYDPPTKSNSYCV 247 (259)
Q Consensus 217 ~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~ 247 (259)
.....+|+.+|.++++.+.+.
T Consensus 212 ----------~~~~~~l~~~d~~~~~~~~l~ 232 (388)
T 3pe7_A 212 ----------DLVDARMWLINEDGTNMRKVK 232 (388)
T ss_dssp ----------TTSSCSEEEEETTSCCCEESC
T ss_pred ----------CCCcceEEEEeCCCCceEEee
Confidence 012345666666655554443
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.081 Score=46.96 Aligned_cols=114 Identities=12% Similarity=0.067 Sum_probs=67.9
Q ss_pred cCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 76 VDEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 76 ~~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
.+.-..-.+++|.+ +++.++++..||.|..|+........ ...+.+ .......+....++|
T Consensus 78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~------~~~~~~------------~~~~~h~~~v~~~~~ 139 (402)
T 2aq5_A 78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL------PLREPV------------ITLEGHTKRVGIVAW 139 (402)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS------CBCSCS------------EEEECCSSCEEEEEE
T ss_pred ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc------ccCCce------------EEecCCCCeEEEEEE
Confidence 33344567899999 89999999999999999876541100 000000 011122345678999
Q ss_pred eCCCC-cEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 155 NKDTG-DLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 155 d~~~G-~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
.++ | +++++-...| |...|.++++...... ..+ .-.....+++.++|+.+++-
T Consensus 140 ~p~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~l~~~ 194 (402)
T 2aq5_A 140 HPT-AQNVLLSAGCDNVILVWDVGTGAAVLTLG-PDV-HPDTIYSVDWSRDGALICTS 194 (402)
T ss_dssp CSS-BTTEEEEEETTSCEEEEETTTTEEEEEEC-TTT-CCSCEEEEEECTTSSCEEEE
T ss_pred CcC-CCCEEEEEcCCCEEEEEECCCCCccEEEe-cCC-CCCceEEEEECCCCCEEEEE
Confidence 995 6 5665544444 7777988775332221 011 12356889999998855553
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.092 Score=46.58 Aligned_cols=112 Identities=10% Similarity=0.035 Sum_probs=69.8
Q ss_pred EEccCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcce
Q 039124 73 LEFVDEVFGPESLEFDGLG-RGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLG 151 (259)
Q Consensus 73 ~l~~~~l~gPE~ia~D~~G-~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlG 151 (259)
..+.+.-....+++|.++| +.++++..+|.|..|+........ . +......+....
T Consensus 125 ~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~-~----------------------~~~~~~~~~v~~ 181 (402)
T 2aq5_A 125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL-T----------------------LGPDVHPDTIYS 181 (402)
T ss_dssp EEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEE-E----------------------ECTTTCCSCEEE
T ss_pred EEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccE-E----------------------EecCCCCCceEE
Confidence 3344545667789999987 689999999999999987652111 0 000112234578
Q ss_pred EEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 152 LRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 152 l~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
+++.++ |+++++-...| |...|..+++...... .+..-..+..+++.++|+++++-
T Consensus 182 ~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g 238 (402)
T 2aq5_A 182 VDWSRD-GALICTSCRDKRVRVIEPRKGTVVAEKD--RPHEGTRPVHAVFVSEGKILTTG 238 (402)
T ss_dssp EEECTT-SSCEEEEETTSEEEEEETTTTEEEEEEE--CSSCSSSCCEEEECSTTEEEEEE
T ss_pred EEECCC-CCEEEEEecCCcEEEEeCCCCceeeeec--cCCCCCcceEEEEcCCCcEEEEe
Confidence 999984 76555444444 7777988775332221 12222246788889998876664
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.25 Score=43.74 Aligned_cols=117 Identities=15% Similarity=-0.026 Sum_probs=72.2
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.+.-..-.+++|.++|..+.++..||.|..|+........ .... . . ............++|.
T Consensus 246 ~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~-~~~~-~--~--------------~~~~~~~~~v~~~~~s 307 (380)
T 3iz6_a 246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ-VYNR-E--P--------------DRNDNELPIVTSVAFS 307 (380)
T ss_dssp CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEE-EECC-C--C--------------SSSCCSSCSCSEEEEC
T ss_pred CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEE-Eecc-c--c--------------cccccccCceEEEEEC
Confidence 3333445689999999999999999999999987652111 1100 0 0 0001111224589999
Q ss_pred CCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 156 KDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 156 ~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
++ |+++++-...| |...|..+++...-........-...+.+++.+||...+|-+
T Consensus 308 ~~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 363 (380)
T 3iz6_a 308 IS-GRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGS 363 (380)
T ss_dssp SS-SSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred CC-CCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEee
Confidence 94 88877765555 666687766432222111112234689999999999888755
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.031 Score=48.82 Aligned_cols=123 Identities=15% Similarity=0.089 Sum_probs=69.9
Q ss_pred ceeEEEcCCCC-EEEEEcCC----CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 82 PESLEFDGLGR-GPYTGLAD----GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 82 PE~ia~D~~G~-~~yt~~~~----G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
+.+++|.++|+ ++|++..+ +.|+.++..+....... . .. + ..+++.+
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-----------------------~-~~--~--~~~~~s~ 291 (396)
T 3c5m_A 240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM-----------------------V-MP--P--CSHLMSN 291 (396)
T ss_dssp EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE-----------------------E-CC--S--EEEEEEC
T ss_pred ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee-----------------------e-CC--C--CCCCccC
Confidence 55679999987 45554432 34888887654222110 0 00 1 1167776
Q ss_pred -CCCcEEEEeC-----------------CCceEEEECCCCeEEEeeecCCC------CCccccccEEEcCCCc-EEEecC
Q 039124 157 -DTGDLYIADA-----------------YYGLLVVGSKGGLATPLATQAGG------KPILFANDLDVHKNGS-IFFTDT 211 (259)
Q Consensus 157 -~~G~L~VaD~-----------------~~Gl~~v~~~gg~~~~l~~~~~g------~pl~~~Ndl~vd~dG~-IyfTDs 211 (259)
+ |.++++.. ...|+.+|.++++.+.+...... ........+++++||+ |+|+..
T Consensus 292 ~d-g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 292 FD-GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp SS-SSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred CC-CceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 5 77776532 23489999988876655432210 0111245678899996 777654
Q ss_pred CCCCCcccceeeeeccCCCceEEEEeCCCCcEEEecC
Q 039124 212 SKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVR 248 (259)
Q Consensus 212 s~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~ 248 (259)
.. ....||++|..+++.+++..
T Consensus 371 ~~---------------~~~~l~~~~~~~~~~~~~~~ 392 (396)
T 3c5m_A 371 FE---------------GVPAIYIADVPESYKHLEHH 392 (396)
T ss_dssp TT---------------SSCEEEEEECCTTCC-----
T ss_pred CC---------------CCceEEEEEEcccccccccc
Confidence 21 23479999988887777653
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.012 Score=52.13 Aligned_cols=50 Identities=6% Similarity=0.078 Sum_probs=32.2
Q ss_pred EEeCCCCcEEEEe---C-CCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCC-cEEEecC
Q 039124 153 RFNKDTGDLYIAD---A-YYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNG-SIFFTDT 211 (259)
Q Consensus 153 ~~d~~~G~L~VaD---~-~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG-~IyfTDs 211 (259)
.+..+++.||.+| . ...|++++.+|...+.|.... . .+++++| .|||||.
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~-~--------~~~~~~g~~iy~t~~ 164 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHY-L--------FTCNTSDRYFYYNNP 164 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSC-C--------CCSEEETTEEEEECT
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCC-c--------eEeeEECCEEEEEeC
Confidence 3333346899888 2 234999999988777776531 1 2235555 4999886
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.093 Score=44.95 Aligned_cols=110 Identities=14% Similarity=0.061 Sum_probs=70.5
Q ss_pred EEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceE
Q 039124 73 LEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGL 152 (259)
Q Consensus 73 ~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl 152 (259)
+.+.+.-..-.+++|.++|..+.++..||.|..|+........ .. ......-..+
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~-~~------------------------~~~~~~v~~~ 61 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR-SI------------------------QVTETPVRAG 61 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-EE------------------------ECCSSCEEEE
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE-Ee------------------------eccCCcEEEE
Confidence 3345555567799999999999999999999999987652111 00 0011123478
Q ss_pred EEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 153 RFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 153 ~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
+|.++ |+++++-+..| |...|.++++...... +. -...+.+++.++|.+.+|-+.
T Consensus 62 ~~~~~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~---~h-~~~v~~~~~~~~~~~l~sgs~ 117 (304)
T 2ynn_A 62 KFIAR-KNWIIVGSDDFRIRVFNYNTGEKVVDFE---AH-PDYIRSIAVHPTKPYVLSGSD 117 (304)
T ss_dssp EEEGG-GTEEEEEETTSEEEEEETTTCCEEEEEE---CC-SSCEEEEEECSSSSEEEEEET
T ss_pred EEeCC-CCEEEEECCCCEEEEEECCCCcEEEEEe---CC-CCcEEEEEEcCCCCEEEEECC
Confidence 88884 77766555555 6666888775322222 11 135788999999987776543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.11 Score=44.33 Aligned_cols=105 Identities=8% Similarity=0.054 Sum_probs=69.9
Q ss_pred ccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 75 FVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 75 ~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
+.+.-..-.+++|.++|+.++++..+|.|..|+........ ......+....++|
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-------------------------~~~~h~~~v~~~~~ 82 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG-------------------------TLDGHTGTIWSIDV 82 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE-------------------------EECCCSSCEEEEEE
T ss_pred EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh-------------------------hhhhcCCcEEEEEE
Confidence 34555667889999999999999999999999876542111 01112334568999
Q ss_pred eCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 155 NKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 155 d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
.++ |+++++-...| |...|.++++...... .. ..+..+++.++|+.+++-
T Consensus 83 ~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~----~~v~~~~~~~~~~~l~~~ 133 (369)
T 3zwl_B 83 DCF-TKYCVTGSADYSIKLWDVSNGQCVATWK-SP----VPVKRVEFSPCGNYFLAI 133 (369)
T ss_dssp CTT-SSEEEEEETTTEEEEEETTTCCEEEEEE-CS----SCEEEEEECTTSSEEEEE
T ss_pred cCC-CCEEEEEeCCCeEEEEECCCCcEEEEee-cC----CCeEEEEEccCCCEEEEe
Confidence 984 77666544455 6777888775433332 11 247889999999866553
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.23 Score=43.43 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=68.9
Q ss_pred cCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 76 VDEVFGPESLEFDGLG-RGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G-~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
.+.-..-.+++|.++| +.++++..+|.|..|+......... .......+....++|
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------------~~~~~h~~~v~~~~~ 126 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-----------------------IQGMGPGDAITGMKF 126 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-----------------------ECCCSTTCBEEEEEE
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-----------------------eecCCcCCceeEEEe
Confidence 3334566789999998 8899999999999999875532210 000112334568999
Q ss_pred eCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 155 NKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 155 d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
.+++++++++-...| |...|.+++....+... .+ .-.....+++.++|+..++-
T Consensus 127 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~ 181 (383)
T 3ei3_B 127 NQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKT-DS-WDYWYCCVDVSVSRQMLATG 181 (383)
T ss_dssp ETTEEEEEEEEETTTEEEEEETTSCEEEEEECC-CC-SSCCEEEEEEETTTTEEEEE
T ss_pred CCCCCCEEEEEeCCCEEEEEECCCCceEEEecc-CC-CCCCeEEEEECCCCCEEEEE
Confidence 883356655444444 66668887655544322 11 12346788999988866554
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=96.54 E-value=0.24 Score=41.97 Aligned_cols=107 Identities=9% Similarity=0.119 Sum_probs=67.1
Q ss_pred ccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 75 FVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 75 ~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
+.+.-..-.+++|.++|+.++++..+|.|..|+........ . .....+.-..++|
T Consensus 61 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~------------------------~~~~~~~v~~~~~ 115 (312)
T 4ery_A 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-T------------------------LKGHSNYVFCCNF 115 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-E------------------------EECCSSCEEEEEE
T ss_pred hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEE-E------------------------EcCCCCCEEEEEE
Confidence 34444566789999999999999999999999976542111 0 0111233467889
Q ss_pred eCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 155 NKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 155 d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
.++ ++++++-...| |...|.++++........ -.....++++++|+..++-+
T Consensus 116 ~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~ 168 (312)
T 4ery_A 116 NPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAH----SDPVSAVHFNRDGSLIVSSS 168 (312)
T ss_dssp CSS-SSEEEEEETTSCEEEEETTTCCEEEEECCC----SSCEEEEEECTTSSEEEEEE
T ss_pred cCC-CCEEEEEeCCCcEEEEECCCCEEEEEecCC----CCcEEEEEEcCCCCEEEEEe
Confidence 985 77766544444 677788776532222111 12357788888887665543
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=96.49 E-value=0.083 Score=44.91 Aligned_cols=104 Identities=12% Similarity=0.037 Sum_probs=64.5
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
..-.+++|.++|+.++++..||.|..|+....... ... ........+++.+ ++
T Consensus 216 ~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~-~~~-------------------------~~~~~v~~~~~~~-~~ 268 (340)
T 4aow_A 216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-YTL-------------------------DGGDIINALCFSP-NR 268 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE-EEE-------------------------ECSSCEEEEEECS-SS
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee-eee-------------------------cCCceEEeeecCC-CC
Confidence 34468999999999999999999999998765211 100 0112234677877 47
Q ss_pred cEEEEeCCCceEEEECCCCeEEEeee-c-----CCCCCccccccEEEcCCCcEEEecC
Q 039124 160 DLYIADAYYGLLVVGSKGGLATPLAT-Q-----AGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 160 ~L~VaD~~~Gl~~v~~~gg~~~~l~~-~-----~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
.++++-....|...|.+++....-.. . ..+ .....+.+++++||+..+|-+
T Consensus 269 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~sgs 325 (340)
T 4aow_A 269 YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA-EPPQCTSLAWSADGQTLFAGY 325 (340)
T ss_dssp SEEEEEETTEEEEEETTTTEEEEEECCC-------C-CCCCEEEEEECTTSSEEEEEE
T ss_pred ceeeccCCCEEEEEECCCCeEEEeccccceeeeccC-CCCCEEEEEECCCCCEEEEEe
Confidence 77665544446666877664221111 1 111 123568899999999777643
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.03 Score=54.01 Aligned_cols=61 Identities=16% Similarity=0.191 Sum_probs=38.0
Q ss_pred cceEEEeCCCCcEEE-Ee--CC---CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 149 PLGLRFNKDTGDLYI-AD--AY---YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 149 PlGl~~d~~~G~L~V-aD--~~---~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
...++| ++ |+.++ +. .. ..|+.+|.++++...+.......-+...+++++.+||+++++-.
T Consensus 289 ~~~~~~-pD-g~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~ 355 (741)
T 2ecf_A 289 LARVNW-RD-PQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSE 355 (741)
T ss_dssp EEEEEE-EE-TTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEEC
T ss_pred EEEEEe-CC-CCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEec
Confidence 457889 85 76544 32 11 23888899988766665432221111346889999999777644
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.026 Score=51.42 Aligned_cols=66 Identities=8% Similarity=-0.178 Sum_probs=46.4
Q ss_pred cCCCcceEEEeCCCCcEEEEeCC----------CceEEEECCCCeEEEeeecCCC-C---CccccccEEEcCCCc-EEEe
Q 039124 145 WCGRPLGLRFNKDTGDLYIADAY----------YGLLVVGSKGGLATPLATQAGG-K---PILFANDLDVHKNGS-IFFT 209 (259)
Q Consensus 145 ~~grPlGl~~d~~~G~L~VaD~~----------~Gl~~v~~~gg~~~~l~~~~~g-~---pl~~~Ndl~vd~dG~-IyfT 209 (259)
.+.+| |++++++...+||++.+ .-|..+|+.+++...-+. ..+ . ....|..+++++||+ +|++
T Consensus 64 vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~lyVa 141 (368)
T 1mda_H 64 GAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSACLLFF 141 (368)
T ss_dssp ECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSCEEEE
T ss_pred CCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCEEEEE
Confidence 35679 99999976689999852 228899999876322221 221 1 125799999999996 9999
Q ss_pred cCC
Q 039124 210 DTS 212 (259)
Q Consensus 210 Dss 212 (259)
+..
T Consensus 142 n~~ 144 (368)
T 1mda_H 142 LFG 144 (368)
T ss_dssp ECS
T ss_pred ccC
Confidence 753
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.067 Score=47.20 Aligned_cols=102 Identities=13% Similarity=0.142 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEEeCCCce
Q 039124 91 GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGL 170 (259)
Q Consensus 91 G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~VaD~~~Gl 170 (259)
++.+|++..+|.|+.++...+. ..+ ... .+.+.++..+ ++.+|+++...+|
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG~-~~w------------------------~~~--~~~~~~~~~~--~~~l~~~~~~g~l 289 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSGQ-IMW------------------------KRE--LGSVNDFIVD--GNRIYLVDQNDRV 289 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTCC-EEE------------------------EEC--CCCEEEEEEE--TTEEEEEETTCCE
T ss_pred CCEEEEEecCcEEEEEECCCCc-EEe------------------------ecc--CCCCCCceEE--CCEEEEEcCCCeE
Confidence 3457888888899999876542 111 111 1223456666 3799999887789
Q ss_pred EEEECCCCeEEEeeec-CCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEE
Q 039124 171 LVVGSKGGLATPLATQ-AGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNS 244 (259)
Q Consensus 171 ~~v~~~gg~~~~l~~~-~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~ 244 (259)
+.+|+++|+.. +... ..+. ......+. +|.||+.+. .|.|+.+|++||+..
T Consensus 290 ~~~d~~tG~~~-w~~~~~~~~---~~~~~~~~-~~~l~v~~~------------------~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 290 MALTIDGGVTL-WTQSDLLHR---LLTSPVLY-NGNLVVGDS------------------EGYLHWINVEDGRFV 341 (376)
T ss_dssp EEEETTTCCEE-EEECTTTTS---CCCCCEEE-TTEEEEECT------------------TSEEEEEETTTCCEE
T ss_pred EEEECCCCcEE-EeecccCCC---cccCCEEE-CCEEEEEeC------------------CCeEEEEECCCCcEE
Confidence 99999988643 3222 2221 12233333 578888764 256777777777643
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.031 Score=52.63 Aligned_cols=121 Identities=8% Similarity=-0.125 Sum_probs=70.4
Q ss_pred CceeEEEcCCCCEEEEEcC---CC--eEEEEeC--CCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEE
Q 039124 81 GPESLEFDGLGRGPYTGLA---DG--RIVRWMG--ENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLR 153 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~---~G--~I~ri~~--~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~ 153 (259)
.-.+++|.++ +++|+... +. +|+.++. ++... . + . ........+
T Consensus 66 ~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~-----------l-------------~---~~~~~~~~~ 116 (582)
T 3o4h_A 66 SVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-R-----------L-------------E---AVKPMRILS 116 (582)
T ss_dssp EECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-E-----------C-------------T---TSCSBEEEE
T ss_pred ccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-c-----------c-------------c---CCCCceeee
Confidence 4567888887 77887654 22 5777776 44311 1 0 0 011112334
Q ss_pred EeCC-CCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCce
Q 039124 154 FNKD-TGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGR 232 (259)
Q Consensus 154 ~d~~-~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~Gr 232 (259)
+.++ ++.+|++....++..+|.++++.+.+.... . ++++++|||+..++-+.. ....+.
T Consensus 117 ~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~----~---~~~~~spDG~~la~~~~~-------------~~~~~~ 176 (582)
T 3o4h_A 117 GVDTGEAVVFTGATEDRVALYALDGGGLRELARLP----G---FGFVSDIRGDLIAGLGFF-------------GGGRVS 176 (582)
T ss_dssp EEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES----S---CEEEEEEETTEEEEEEEE-------------ETTEEE
T ss_pred eCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC----C---ceEEECCCCCEEEEEEEc-------------CCCCeE
Confidence 4543 134566666666667788888777665421 1 899999999844432211 112256
Q ss_pred EEEEeCCCCcEEEecCCC
Q 039124 233 LLRYDPPTKSNSYCVRWL 250 (259)
Q Consensus 233 L~rydp~tg~~~vl~~~L 250 (259)
|+.+|.++|+.+.+...-
T Consensus 177 i~~~d~~~g~~~~l~~~~ 194 (582)
T 3o4h_A 177 LFTSNLSSGGLRVFDSGE 194 (582)
T ss_dssp EEEEETTTCCCEEECCSS
T ss_pred EEEEcCCCCCceEeecCC
Confidence 888888888877775543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=96.35 E-value=0.17 Score=43.52 Aligned_cols=104 Identities=11% Similarity=0.007 Sum_probs=64.9
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
.-.+++|.++|+.++++..+|.|..|+.++..+.... ......+....++|.++ |+
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~-----------------------~~~~h~~~v~~~~~~~~-~~ 65 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-----------------------ELKEHNGQVTGVDWAPD-SN 65 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEE-----------------------EEECCSSCEEEEEEETT-TT
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeee-----------------------eecCCCCcccEEEEeCC-CC
Confidence 4468899999998999999999999987665211110 00112234578999994 77
Q ss_pred EEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 161 LYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 161 L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
++++-...| |...+.++++........ + .-...+.+++.++|+.+++-
T Consensus 66 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~ 114 (372)
T 1k8k_C 66 RIVTCGTDRNAYVWTLKGRTWKPTLVIL-R-INRAARCVRWAPNEKKFAVG 114 (372)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEECC-C-CSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCeeeeeEEee-c-CCCceeEEEECCCCCEEEEE
Confidence 666544444 666677766533222211 1 12357889999998855543
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.13 Score=43.04 Aligned_cols=101 Identities=14% Similarity=0.015 Sum_probs=66.7
Q ss_pred CCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 78 EVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
.-....++++.+++. ++++..+|.|..|+........ . .....+....++|.++
T Consensus 183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~-~------------------------~~~~~~~i~~~~~~~~ 236 (313)
T 3odt_A 183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLR-T------------------------YEGHESFVYCIKLLPN 236 (313)
T ss_dssp CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEE-E------------------------EECCSSCEEEEEECTT
T ss_pred CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhh-h------------------------hhcCCceEEEEEEecC
Confidence 345567889988888 8899999999999986542111 0 0112234578999994
Q ss_pred CCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 158 TGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 158 ~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
|.|+++.....|...|..+++........ -.....+++.++|++..+
T Consensus 237 -~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~ 283 (313)
T 3odt_A 237 -GDIVSCGEDRTVRIWSKENGSLKQVITLP----AISIWSVDCMSNGDIIVG 283 (313)
T ss_dssp -SCEEEEETTSEEEEECTTTCCEEEEEECS----SSCEEEEEECTTSCEEEE
T ss_pred -CCEEEEecCCEEEEEECCCCceeEEEecc----CceEEEEEEccCCCEEEE
Confidence 77776665555777788777533333221 225788999999985543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.17 Score=46.83 Aligned_cols=99 Identities=12% Similarity=0.136 Sum_probs=65.0
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
.-.+++|.++++.+.++..++.|..|+..+.....+ ....+....++|.++ |.
T Consensus 428 ~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~--------------------------~~~~~~v~~~~~spd-~~ 480 (577)
T 2ymu_A 428 SVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTL--------------------------TGHSSSVRGVAFSPD-GQ 480 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEE--------------------------ECCSSCEEEEEECTT-SC
T ss_pred CeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEE--------------------------cCCCCCEEEEEEcCC-CC
Confidence 345789999999889999999999998766422111 111234568999995 88
Q ss_pred EEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 161 LYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 161 L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
++++-...+ |...+.++.....+... -...+.+++.+||+..+|-+
T Consensus 481 ~las~~~d~~i~iw~~~~~~~~~~~~h-----~~~v~~l~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 481 TIASASDDKTVKLWNRNGQLLQTLTGH-----SSSVRGVAFSPDGQTIASAS 527 (577)
T ss_dssp EEEEEETTSEEEEEETTSCEEEEEECC-----SSCEEEEEECTTSSCEEEEE
T ss_pred EEEEEeCCCEEEEEcCCCCEEEEEeCC-----CCCEEEEEEcCCCCEEEEEE
Confidence 777544455 55557666544444321 12468899999998666543
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.16 Score=44.26 Aligned_cols=103 Identities=13% Similarity=0.074 Sum_probs=66.3
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
-..-.+++|.++++.++++..+|.|..|+........ ......+....+++.++
T Consensus 247 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-------------------------~~~~~~~~i~~~~~~~~- 300 (425)
T 1r5m_A 247 HGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN-------------------------CFYGHSQSIVSASWVGD- 300 (425)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSE-------------------------EECCCSSCEEEEEEETT-
T ss_pred CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccce-------------------------EecCCCccEEEEEECCC-
Confidence 3455789999999989999999999999876542100 01112334578999984
Q ss_pred CcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 159 GDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 159 G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
|.++++.....|..+|..+++......... ...+.+++.++|+++++-+
T Consensus 301 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~i~~~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 301 DKVISCSMDGSVRLWSLKQNTLLALSIVDG----VPIFAGRISQDGQKYAVAF 349 (425)
T ss_dssp TEEEEEETTSEEEEEETTTTEEEEEEECTT----CCEEEEEECTTSSEEEEEE
T ss_pred CEEEEEeCCCcEEEEECCCCcEeEecccCC----ccEEEEEEcCCCCEEEEEE
Confidence 744444444447777888775333322211 2567899999998766643
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.033 Score=49.25 Aligned_cols=98 Identities=15% Similarity=0.094 Sum_probs=58.3
Q ss_pred eEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcce
Q 039124 72 KLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLG 151 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlG 151 (259)
++|..+.. +.+.++ .+.++||+....+|++++.++...+.+ . + .+..
T Consensus 142 ~~lt~~~~---~~~~~~-g~~iy~t~~g~~~Iy~~~l~g~~~~~l-----------~--------------~----~~~~ 188 (302)
T 3s25_A 142 KKIKNHYL---FTCNTS-DRYFYYNNPKNGQLYRYDTASQSEALF-----------Y--------------D----CNCY 188 (302)
T ss_dssp EEEESSCC---CCSEEE-TTEEEEECTTTCCEEEEETTTTEEEEE-----------E--------------C----SCEE
T ss_pred EEEeCCCc---eEeeEE-CCEEEEEeCCCceEEEEECCCCCEEEE-----------e--------------C----CCcc
Confidence 44444433 334443 345777887778999999887622211 0 0 0122
Q ss_pred EEEeCCCCcEEEEeCCC--ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecC
Q 039124 152 LRFNKDTGDLYIADAYY--GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDT 211 (259)
Q Consensus 152 l~~d~~~G~L~VaD~~~--Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDs 211 (259)
..+.++++.||.+|... .|.+++.+|+..++|++. .+ + .++++|. |||++.
T Consensus 189 ~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~----~~--~---~~~~~g~~Iy~~~~ 242 (302)
T 3s25_A 189 KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA----NI--E---HYNVYGSLIFYQRG 242 (302)
T ss_dssp EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS----CE--E---EEEEETTEEEEEEC
T ss_pred ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC----Cc--c---eEEECCCEEEEEEC
Confidence 23455457888888654 499999999887777542 12 2 2566664 998743
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.046 Score=48.41 Aligned_cols=107 Identities=10% Similarity=0.044 Sum_probs=56.0
Q ss_pred ceeEEEcCCCCEEEEEcC------CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 82 PESLEFDGLGRGPYTGLA------DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~------~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
-.+++|.++|+++.++.. ||.|+.|+..... . . ...|. ........-..++|.
T Consensus 45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~-~-------~--~~~~~-----------~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGA-P-------N--ESLCT-----------AGVQTEAGVTDVAWV 103 (357)
T ss_dssp EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC-----------C--GGGCS-----------EEEECSSCEEEEEEE
T ss_pred EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCC-c-------c--eeEec-----------ccCCCCCCEEEEEEc
Confidence 368999999998888765 6778777654331 0 0 11121 001111224688999
Q ss_pred CCCCcEEEEeCCCceEEEECCCCeEEEeee-cCCCCCccccccEEEcCCCcEEEecC
Q 039124 156 KDTGDLYIADAYYGLLVVGSKGGLATPLAT-QAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 156 ~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~-~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
++ +.++++.....|...|..+++...... ...+ .-...+.+++.+||+..+|-+
T Consensus 104 ~d-~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~l~sgs 158 (357)
T 4g56_B 104 SE-KGILVASDSGAVELWEILEKESLLVNKFAKYE-HDDIVKTLSVFSDGTQAVSGG 158 (357)
T ss_dssp TT-TEEEEEETTSCEEEC--------CCCCEEECC-CSSCEEEEEECSSSSEEEEEE
T ss_pred CC-CCEEEEECCCEEEEeeccccceeEEEeeccCC-CCCCEEEEEECCCCCEEEEEe
Confidence 95 888877554445555766553211111 1111 112467899999998766543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.095 Score=46.21 Aligned_cols=101 Identities=12% Similarity=0.165 Sum_probs=53.6
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc--ceEEEeCCCCcE
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP--LGLRFNKDTGDL 161 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP--lGl~~d~~~G~L 161 (259)
+++++ ++.+|+...+|.|+.++.+.+. ..+...... . ......++.+ .++..+ +|.+
T Consensus 48 ~p~v~--~~~v~~~~~~g~v~a~d~~tG~-~~W~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--~~~v 106 (376)
T 3q7m_A 48 HPALA--DNVVYAADRAGLVKALNADDGK-EIWSVSLAE--K--------------DGWFSKEPALLSGGVTVS--GGHV 106 (376)
T ss_dssp CCEEE--TTEEEEECTTSEEEEEETTTCC-EEEEEECCC-------------------CCSCCCCCEEEEEEEE--TTEE
T ss_pred ccEEE--CCEEEEEcCCCeEEEEEccCCc-eeeeecCcc--c--------------cccccccCcccccCceEe--CCEE
Confidence 45554 4458998889999999986542 222111100 0 0000111122 234444 4799
Q ss_pred EEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 162 YIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 162 ~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
||+....+|+.+|.++|+.. +.....+... ....+ .+|.||+..
T Consensus 107 ~v~~~~g~l~a~d~~tG~~~-W~~~~~~~~~---~~p~~-~~~~v~v~~ 150 (376)
T 3q7m_A 107 YIGSEKAQVYALNTSDGTVA-WQTKVAGEAL---SRPVV-SDGLVLIHT 150 (376)
T ss_dssp EEEETTSEEEEEETTTCCEE-EEEECSSCCC---SCCEE-ETTEEEEEC
T ss_pred EEEcCCCEEEEEECCCCCEE-EEEeCCCceE---cCCEE-ECCEEEEEc
Confidence 99887777999999988643 3323322211 11122 366788754
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=96.22 E-value=0.2 Score=43.65 Aligned_cols=126 Identities=14% Similarity=0.125 Sum_probs=74.7
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccC--cCCCcceEEEeC
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEK--WCGRPLGLRFNK 156 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~grPlGl~~d~ 156 (259)
-....+++|.++| .++++..+|.|..|+....... ..+.. ...+ ..+....++|++
T Consensus 186 ~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~-~~~~~--------------------~~~h~~~~~~i~~i~~~~ 243 (397)
T 1sq9_A 186 SQFATSVDISERG-LIATGFNNGTVQISELSTLRPL-YNFES--------------------QHSMINNSNSIRSVKFSP 243 (397)
T ss_dssp CCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEE-EEEEC--------------------CC---CCCCCEEEEEECS
T ss_pred CCCceEEEECCCc-eEEEEeCCCcEEEEECCCCcee-EEEec--------------------cccccccCCccceEEECC
Confidence 3456789999999 8999999999999998654211 10000 0001 033456899998
Q ss_pred CCCcEEEEeCCC---c-eEEEECCCCeEEEeeecCC--C-------CCccccccEEEcCCCcEEEecCCCCCCcccceee
Q 039124 157 DTGDLYIADAYY---G-LLVVGSKGGLATPLATQAG--G-------KPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFI 223 (259)
Q Consensus 157 ~~G~L~VaD~~~---G-l~~v~~~gg~~~~l~~~~~--g-------~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~ 223 (259)
+ |+++++-... | |..+|..+++......... . ..-...+.++++++|+.+++-+.
T Consensus 244 ~-~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------- 311 (397)
T 1sq9_A 244 Q-GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW----------- 311 (397)
T ss_dssp S-TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET-----------
T ss_pred C-CCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC-----------
Confidence 5 7776654443 4 6667877664322221100 0 01235678999999987666432
Q ss_pred eeccCCCceEEEEeCCCCcEE
Q 039124 224 LLEGESTGRLLRYDPPTKSNS 244 (259)
Q Consensus 224 ~~e~~~~GrL~rydp~tg~~~ 244 (259)
.|.|..||..+++..
T Consensus 312 ------dg~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 312 ------DGKLRFWDVKTKERI 326 (397)
T ss_dssp ------TSEEEEEETTTTEEE
T ss_pred ------CCeEEEEEcCCCcee
Confidence 346666666655443
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.082 Score=48.57 Aligned_cols=130 Identities=13% Similarity=0.136 Sum_probs=79.3
Q ss_pred CCceeEEEcCC----CC-EEEEEcCCCeEEEEeCC---CccEEEEEEeecCccccccccCccccccccccccCcCCCcce
Q 039124 80 FGPESLEFDGL----GR-GPYTGLADGRIVRWMGE---NVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLG 151 (259)
Q Consensus 80 ~gPE~ia~D~~----G~-~~yt~~~~G~I~ri~~~---~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlG 151 (259)
.|--+||.+++ ++ +||..+.+.+++++..+ .... .. . + +.+......+...|
T Consensus 220 ~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~-------~~--~-v----------~~~G~kg~~s~~~~ 279 (381)
T 3q6k_A 220 AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGG-------KL--N-P----------ELLGNRGKYNDAIA 279 (381)
T ss_dssp CCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTC-------CC--C-C----------EEEEECCTTCCEEE
T ss_pred cCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcch-------hh--c-e----------EEeeecCCCCCcce
Confidence 46778888775 44 55666777789988631 1100 00 0 0 00100000123356
Q ss_pred EEEeCCCCcEEEEeCCC-ceEEEECCC-----CeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeee-
Q 039124 152 LRFNKDTGDLYIADAYY-GLLVVGSKG-----GLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFIL- 224 (259)
Q Consensus 152 l~~d~~~G~L~VaD~~~-Gl~~v~~~g-----g~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~- 224 (259)
+++|.++|+||+++... +|...++++ +..++++.. ..+.+|+++.++.+|.+||+... .+ .|+..-
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d---~~l~~pd~~~i~~~g~Lwv~sn~--l~--~~~~g~l 352 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTS---SRFVFGTDISVDSKGGLWFMSNG--FP--PIRKSEK 352 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEEC---TTCCSEEEEEECTTSCEEEEECS--CC--SSTTGGG
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEEC---CCccccCeEEECCCCeEEEEECc--ch--HhhcCCc
Confidence 78873269999999776 599999987 334666542 27899999999999999998754 22 222221
Q ss_pred -eccCCCceEEEE
Q 039124 225 -LEGESTGRLLRY 236 (259)
Q Consensus 225 -~e~~~~GrL~ry 236 (259)
-..+..=||+|.
T Consensus 353 ~d~~~~nfrI~r~ 365 (381)
T 3q6k_A 353 FKYDFPRYRLMRI 365 (381)
T ss_dssp CCCSSCSEEEEEE
T ss_pred CCCCcCCEEEEEe
Confidence 123556788887
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.14 Score=44.74 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=49.9
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
.-.+++|.++|+.++++..+|.|..|+..+.....+ ....+....++|.++ |+
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~--------------------------~~~~~~v~~~~~~~~-~~ 162 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVL--------------------------NFHRAPIVSVKWNKD-GT 162 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEE--------------------------CCCCSCEEEEEECTT-SS
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeec--------------------------cCCCccEEEEEECCC-CC
Confidence 456889999999999999999999998555421111 112234568999985 66
Q ss_pred EE-EEeCCCceEEEECCCCeE
Q 039124 161 LY-IADAYYGLLVVGSKGGLA 180 (259)
Q Consensus 161 L~-VaD~~~Gl~~v~~~gg~~ 180 (259)
.+ ++.....+..++..+++.
T Consensus 163 ~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 163 HIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp EEEEEETTCCEEEEETTTTEE
T ss_pred EEEEEecCCeEEEEECCCCcE
Confidence 54 455444577778877753
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.046 Score=52.58 Aligned_cols=93 Identities=12% Similarity=-0.098 Sum_probs=59.8
Q ss_pred cCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEEeCC
Q 039124 88 DGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAY 167 (259)
Q Consensus 88 D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~VaD~~ 167 (259)
|+.+.++.+...++.|..|+.+...... .......|.+++|+++...+||++..
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~--------------------------~i~~g~~p~~v~~SpDGr~lyv~~~d 217 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKT--------------------------VLDTGYAVHISRLSASGRYLFVIGRD 217 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEE--------------------------EEECSSCEEEEEECTTSCEEEEEETT
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEE--------------------------EEeCCCCccceEECCCCCEEEEEcCC
Confidence 3333444455568999999987653221 01223468899999963467998865
Q ss_pred CceEEEECC--CCeEEEeeecCCCCCccccccEEEc----CCCc-EEEecC
Q 039124 168 YGLLVVGSK--GGLATPLATQAGGKPILFANDLDVH----KNGS-IFFTDT 211 (259)
Q Consensus 168 ~Gl~~v~~~--gg~~~~l~~~~~g~pl~~~Ndl~vd----~dG~-IyfTDs 211 (259)
..|..+|.. +++ .+..-..| ..|.+++++ +||+ +|+++.
T Consensus 218 g~V~viD~~~~t~~--~v~~i~~G---~~P~~ia~s~~~~pDGk~l~v~n~ 263 (567)
T 1qks_A 218 GKVNMIDLWMKEPT--TVAEIKIG---SEARSIETSKMEGWEDKYAIAGAY 263 (567)
T ss_dssp SEEEEEETTSSSCC--EEEEEECC---SEEEEEEECCSTTCTTTEEEEEEE
T ss_pred CeEEEEECCCCCCc--EeEEEecC---CCCceeEEccccCCCCCEEEEEEc
Confidence 569999985 543 22221122 258899999 6996 888864
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.32 Score=44.85 Aligned_cols=100 Identities=12% Similarity=0.153 Sum_probs=64.8
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
....++++.++|+.+.++..++.|..|+..+.....+ ....+...+++|.++ +
T Consensus 386 ~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~--------------------------~~~~~~v~~~~~s~d-~ 438 (577)
T 2ymu_A 386 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--------------------------TGHSSSVWGVAFSPD-D 438 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEE--------------------------ECCSSCEEEEEECTT-S
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEe--------------------------cCCCCCeEEEEECCC-C
Confidence 4567899999999889999999999998665421111 011233468999995 7
Q ss_pred cEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 160 DLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 160 ~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
.++++-...+ +...+..+.....+... . ...+.+++++||++.+|-+
T Consensus 439 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~-~----~~v~~~~~spd~~~las~~ 486 (577)
T 2ymu_A 439 QTIASASDDKTVKLWNRNGQLLQTLTGH-S----SSVRGVAFSPDGQTIASAS 486 (577)
T ss_dssp SEEEEEETTSEEEEEETTSCEEEEEECC-S----SCEEEEEECTTSCEEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCEEEEEcCC-C----CCEEEEEEcCCCCEEEEEe
Confidence 6665544444 55557766544444321 1 2467899999998776643
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.25 Score=43.60 Aligned_cols=102 Identities=11% Similarity=0.036 Sum_probs=59.5
Q ss_pred CCceeEEEcCCC-CEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 80 FGPESLEFDGLG-RGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 80 ~gPE~ia~D~~G-~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
..-.+++|.+++ .++.++..||.|..|+........ . +...........+++.+++
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-~----------------------~~~~~~~~~~~~~~~~p~~ 226 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS-Q----------------------IGCSAPGYLPTSLAWHPQQ 226 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEE-E----------------------CC----CCCEEEEEECSSC
T ss_pred CceEEEEecCCCCCceeeeccccccccccccccceee-e----------------------eecceeeccceeeeecCCC
Confidence 344678898877 466788899999999876542111 0 0111123345788998865
Q ss_pred CcEEEEeCCCc-eEEEECCCCeE-EEeeecCCCCCccccccEEEcCCCc-EEEe
Q 039124 159 GDLYIADAYYG-LLVVGSKGGLA-TPLATQAGGKPILFANDLDVHKNGS-IFFT 209 (259)
Q Consensus 159 G~L~VaD~~~G-l~~v~~~gg~~-~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfT 209 (259)
++++++-...| |...|.++++. ..+. +. -...+.+++.++|. +.+|
T Consensus 227 ~~~l~sg~~dg~v~~wd~~~~~~~~~~~----~h-~~~v~~v~fsp~g~~~las 275 (344)
T 4gqb_B 227 SEVFVFGDENGTVSLVDTKSTSCVLSSA----VH-SQCVTGLVFSPHSVPFLAS 275 (344)
T ss_dssp TTEEEEEETTSEEEEEESCC--CCEEEE----CC-SSCEEEEEECSSSSCCEEE
T ss_pred CcceEEeccCCcEEEEECCCCcEEEEEc----CC-CCCEEEEEEccCCCeEEEE
Confidence 77877655556 55568876642 2221 11 12467888888874 4444
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.051 Score=51.09 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=52.4
Q ss_pred CCcceEEEeCC------CCcEEEEeCCCceEEEECCCC----eEEEeeec----CCCCCccccccEEEcCCCcEEEecCC
Q 039124 147 GRPLGLRFNKD------TGDLYIADAYYGLLVVGSKGG----LATPLATQ----AGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 147 grPlGl~~d~~------~G~L~VaD~~~Gl~~v~~~gg----~~~~l~~~----~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
..|.|+.|-.. .|.++++|....|+++..+.+ +.+.+... ..+....++-|+++++||.|||+|..
T Consensus 276 ~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~ 355 (463)
T 2wg3_C 276 GPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSSS 355 (463)
T ss_dssp -CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEES
T ss_pred ccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEECCCCCEEEEecc
Confidence 46899988541 156899998755888865432 12222111 11223457899999999999999975
Q ss_pred CCCCcccceeeeeccCCCceEEEEe-CC
Q 039124 213 KRYNRVDHFFILLEGESTGRLLRYD-PP 239 (259)
Q Consensus 213 ~~~~~~~~~~~~~e~~~~GrL~ryd-p~ 239 (259)
... .....|+|||+- |.
T Consensus 356 ~~~----------~~~~~G~I~Ri~~p~ 373 (463)
T 2wg3_C 356 KSM----------TQTHNGKLYKIVDPK 373 (463)
T ss_dssp SCG----------GGCSSEEEEEEECTT
T ss_pred CCc----------ccCCCCcEEEecCcc
Confidence 321 134679999997 54
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=96.13 E-value=0.12 Score=45.22 Aligned_cols=113 Identities=15% Similarity=0.070 Sum_probs=64.2
Q ss_pred CCCceeEEEcCCCCEEEEEcCC---CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 79 VFGPESLEFDGLGRGPYTGLAD---GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~---G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
-....+++|+++++.++++..+ |.|..|+........ ...........+ .......+....++|.
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~v~~~~~~ 300 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG-SLSVPTHSSQAS-----------LGEFAHSSWVMSLSFN 300 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE-EECBC-------------------CCBSBSSCEEEEEEC
T ss_pred CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccc-eeccCccccccc-----------ccccccCCcEEEEEEC
Confidence 3456789999999999999999 999999976542111 110000000000 0000023445689999
Q ss_pred CCCCcEEEEeCCCc-eEEEECCCCeEEEeee------cC-----CCCC------ccccccEEEcCCC
Q 039124 156 KDTGDLYIADAYYG-LLVVGSKGGLATPLAT------QA-----GGKP------ILFANDLDVHKNG 204 (259)
Q Consensus 156 ~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~------~~-----~g~p------l~~~Ndl~vd~dG 204 (259)
++ |+++++-...| |...|..+++...... .. .|.. -...+.+++.++|
T Consensus 301 ~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g 366 (397)
T 1sq9_A 301 DS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG 366 (397)
T ss_dssp SS-SSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred CC-CCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence 84 77766555555 6677887775332222 10 0000 2357899999998
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.19 Score=44.45 Aligned_cols=101 Identities=11% Similarity=0.112 Sum_probs=59.1
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
.=.+++|.++|+.+.++..||.|..|+........ . .....+.-..++|.+++..
T Consensus 129 ~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~-~------------------------~~~h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 129 IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS-S------------------------YRAHAAQVTCVAASPHKDS 183 (344)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-E------------------------ECCCSSCEEEEEECSSCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE-E------------------------EcCcCCceEEEEecCCCCC
Confidence 34689999999999999999999999987652111 0 0111233467889885335
Q ss_pred EEEEeCCCc-eEEEECCCCeEE-EeeecCCCCCccccccEEEcCC-CcEEEe
Q 039124 161 LYIADAYYG-LLVVGSKGGLAT-PLATQAGGKPILFANDLDVHKN-GSIFFT 209 (259)
Q Consensus 161 L~VaD~~~G-l~~v~~~gg~~~-~l~~~~~g~pl~~~Ndl~vd~d-G~IyfT 209 (259)
++++-...| |...|..+++.. .+.....+ ...+.+++.++ ++++++
T Consensus 184 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~l~s 232 (344)
T 4gqb_B 184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPG---YLPTSLAWHPQQSEVFVF 232 (344)
T ss_dssp EEEEEETTSCEEEEETTSSSCEEECC----C---CCEEEEEECSSCTTEEEE
T ss_pred ceeeeccccccccccccccceeeeeecceee---ccceeeeecCCCCcceEE
Confidence 666544444 666687766532 22211111 23556666664 345444
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.14 Score=45.98 Aligned_cols=106 Identities=12% Similarity=0.077 Sum_probs=68.0
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.+.-..-.+++|.+++..+.++..||.|..|+........ ......+.-..++|+
T Consensus 105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~-------------------------~l~~h~~~V~~v~~~ 159 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER-------------------------TLKGHTDSVQDISFD 159 (410)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE-------------------------EECCCSSCEEEEEEC
T ss_pred cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE-------------------------EEeccCCcEEEEEEc
Confidence 3444566789999999999999999999999976542110 011112334689999
Q ss_pred CCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 156 KDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 156 ~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
++ |+++++-+..| |...|.++++.. ....+. -...+.+++.++|+..+|-+
T Consensus 160 ~~-~~~l~sgs~D~~i~iwd~~~~~~~---~~~~~h-~~~V~~v~~~p~~~~l~s~s 211 (410)
T 1vyh_C 160 HS-GKLLASCSADMTIKLWDFQGFECI---RTMHGH-DHNVSSVSIMPNGDHIVSAS 211 (410)
T ss_dssp TT-SSEEEEEETTSCCCEEETTSSCEE---ECCCCC-SSCEEEEEECSSSSEEEEEE
T ss_pred CC-CCEEEEEeCCCeEEEEeCCCCcee---EEEcCC-CCCEEEEEEeCCCCEEEEEe
Confidence 84 87776554445 556677766422 122222 13567888888888666544
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.35 Score=43.34 Aligned_cols=106 Identities=12% Similarity=0.101 Sum_probs=67.8
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.+.-..-.+++|+++|+.+.++..||.|..|+..+..... ......+.-..++|.
T Consensus 147 ~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~-------------------------~~~~h~~~V~~v~~~ 201 (410)
T 1vyh_C 147 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR-------------------------TMHGHDHNVSSVSIM 201 (410)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE-------------------------CCCCCSSCEEEEEEC
T ss_pred eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-------------------------EEcCCCCCEEEEEEe
Confidence 3433455689999999999999999999999876542110 001112334688999
Q ss_pred CCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 156 KDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 156 ~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
++ |+.+++-...| |...|..++....... +. -...+.+++.++|.+++|-+
T Consensus 202 p~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~---~h-~~~v~~~~~~~~g~~l~s~s 253 (410)
T 1vyh_C 202 PN-GDHIVSASRDKTIKMWEVQTGYCVKTFT---GH-REWVRMVRPNQDGTLIASCS 253 (410)
T ss_dssp SS-SSEEEEEETTSEEEEEETTTCCEEEEEE---CC-SSCEEEEEECTTSSEEEEEE
T ss_pred CC-CCEEEEEeCCCeEEEEECCCCcEEEEEe---CC-CccEEEEEECCCCCEEEEEc
Confidence 94 77766555555 6666887775322211 11 12467888999998777654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=96.09 E-value=0.31 Score=41.83 Aligned_cols=110 Identities=8% Similarity=-0.016 Sum_probs=64.5
Q ss_pred CCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 77 DEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 77 ~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
+.-....+++|.++|+.++++..+|.|..|+.....+... .......+....++|.+
T Consensus 50 ~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-----------------------~~~~~~~~~v~~~~~~~ 106 (372)
T 1k8k_C 50 EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT-----------------------LVILRINRAARCVRWAP 106 (372)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE-----------------------EECCCCSSCEEEEEECT
T ss_pred CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee-----------------------EEeecCCCceeEEEECC
Confidence 3344567899999999999999999999998755422110 00111233467899998
Q ss_pred CCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 157 DTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 157 ~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
+ |+.+++-...| +...+.+++.............-...+.+++.++|+.+++-
T Consensus 107 ~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 160 (372)
T 1k8k_C 107 N-EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 160 (372)
T ss_dssp T-SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred C-CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEE
Confidence 5 76655444444 54445444431111111111112357889999998866654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.31 Score=43.29 Aligned_cols=97 Identities=16% Similarity=0.107 Sum_probs=61.8
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEE
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLY 162 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~ 162 (259)
.+++|.++|+.++++..||.|..|+........ . .....+.-..++|.++ |+.+
T Consensus 127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~-~------------------------~~~h~~~v~~~~~~p~-~~~l 180 (393)
T 1erj_A 127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM-I------------------------LQGHEQDIYSLDYFPS-GDKL 180 (393)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-E------------------------ECCCSSCEEEEEECTT-SSEE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE-E------------------------EccCCCCEEEEEEcCC-CCEE
Confidence 478999999999999999999999987652111 0 0111233468999985 7766
Q ss_pred EEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcC-CCcEEEec
Q 039124 163 IADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHK-NGSIFFTD 210 (259)
Q Consensus 163 VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTD 210 (259)
++-+..| +...|..+++...... ..+ ....+++.+ +|+++++-
T Consensus 181 ~s~s~d~~v~iwd~~~~~~~~~~~-~~~----~v~~~~~~~~~~~~l~~~ 225 (393)
T 1erj_A 181 VSGSGDRTVRIWDLRTGQCSLTLS-IED----GVTTVAVSPGDGKYIAAG 225 (393)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEE-CSS----CEEEEEECSTTCCEEEEE
T ss_pred EEecCCCcEEEEECCCCeeEEEEE-cCC----CcEEEEEECCCCCEEEEE
Confidence 6555555 6666888875433222 111 245677777 67655553
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.31 Score=41.48 Aligned_cols=99 Identities=11% Similarity=-0.005 Sum_probs=65.3
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
...+++|+++|+.++++..+|.|..|+.......... .....+...+++|.++ |+
T Consensus 177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------------------~~~~~~~v~~~~~~~~-~~ 231 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDS------------------------IDLHEKSISDMQFSPD-LT 231 (369)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEE------------------------EECCSSCEEEEEECTT-SS
T ss_pred ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEE------------------------EecCCCceeEEEECCC-CC
Confidence 7788999999999999999999999998752111100 0111234568999985 77
Q ss_pred EEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 161 LYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 161 L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
++++-...| |..+|.+++....... . -...+.++++++|...++
T Consensus 232 ~l~~~~~d~~i~v~d~~~~~~~~~~~-~----~~~~~~~~~~~~~~~l~~ 276 (369)
T 3zwl_B 232 YFITSSRDTNSFLVDVSTLQVLKKYE-T----DCPLNTAVITPLKEFIIL 276 (369)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE-C----SSCEEEEEECSSSSEEEE
T ss_pred EEEEecCCceEEEEECCCCceeeeec-C----CCCceeEEecCCCceEEE
Confidence 665544444 7777888765433332 1 124678999999985544
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.25 Score=43.53 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=53.4
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.+.-..-.+++|.++|+.++++..+|.|..|+........ ......+....++|.
T Consensus 136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-------------------------~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR-------------------------TLIGHRATVTDIAII 190 (420)
T ss_dssp TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE-------------------------EEECCSSCEEEEEEE
T ss_pred ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce-------------------------EEcCCCCcEEEEEEc
Confidence 3445566789999999999999999999999976542110 011123345689999
Q ss_pred CCCCcEEEEeCCCc-eEEEECCCCeE
Q 039124 156 KDTGDLYIADAYYG-LLVVGSKGGLA 180 (259)
Q Consensus 156 ~~~G~L~VaD~~~G-l~~v~~~gg~~ 180 (259)
++ |+++++-...| +...|..+++.
T Consensus 191 ~~-~~~l~s~~~d~~v~iwd~~~~~~ 215 (420)
T 3vl1_A 191 DR-GRNVLSASLDGTIRLWECGTGTT 215 (420)
T ss_dssp TT-TTEEEEEETTSCEEEEETTTTEE
T ss_pred CC-CCEEEEEcCCCcEEEeECCCCce
Confidence 95 77666544444 77778887753
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.43 Score=42.29 Aligned_cols=104 Identities=11% Similarity=0.039 Sum_probs=68.1
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.+.-....+++|.++|+.++++..+|.|..|+....... +. .....+....+++.
T Consensus 214 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~------------------------~~~~~~~v~~~~~~ 268 (401)
T 4aez_A 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPK-FT------------------------KTNHNAAVKAVAWC 268 (401)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEE-EE------------------------ECCCSSCCCEEEEC
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCcc-EE------------------------ecCCcceEEEEEEC
Confidence 334456678999999999999999999999998654211 10 11122345689999
Q ss_pred CCCCcEEEEeC--CCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 156 KDTGDLYIADA--YYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 156 ~~~G~L~VaD~--~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
+++..++++.. ..| |..+|..+++...... .. ...+.+++.++|+..++
T Consensus 269 p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~----~~v~~~~~s~~~~~l~~ 320 (401)
T 4aez_A 269 PWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AG----SQVTSLIWSPHSKEIMS 320 (401)
T ss_dssp TTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CS----SCEEEEEECSSSSEEEE
T ss_pred CCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CC----CcEEEEEECCCCCeEEE
Confidence 85457776643 344 6777887765333222 11 24788999999986655
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.21 Score=47.77 Aligned_cols=139 Identities=13% Similarity=0.006 Sum_probs=79.4
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
....+++|.+++.++|+ .++.|+.|+..+...... . ...+....++|.++ |
T Consensus 82 ~~v~~~~~spd~~~~~~--~~~~i~~~d~~~~~~~~l--~------------------------~~~~~~~~~~~Spd-G 132 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLF--TQGGLVGFDMLARKVTYL--F------------------------DTNEETASLDFSPV-G 132 (706)
T ss_dssp CCCEEEEETTTTEEEEE--ETTEEEEEETTTTEEEEE--E------------------------CCTTCCTTCEECTT-S
T ss_pred cCceeEEECCCCeEEEE--ECCEEEEEECCCCceEEc--c------------------------CCcccccCCcCCCC-C
Confidence 56889999999555555 358999999876522211 0 11233567889985 7
Q ss_pred cEEEEeCCCceEEEECCC-----CeEEEeeecCCCC----------CccccccEEEcCCCc-EEEec--CCCC-------
Q 039124 160 DLYIADAYYGLLVVGSKG-----GLATPLATQAGGK----------PILFANDLDVHKNGS-IFFTD--TSKR------- 214 (259)
Q Consensus 160 ~L~VaD~~~Gl~~v~~~g-----g~~~~l~~~~~g~----------pl~~~Ndl~vd~dG~-IyfTD--ss~~------- 214 (259)
+.++.-....|+.++.++ ++...+....... .+..+++++++|||+ |+++. .+..
T Consensus 133 ~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~ 212 (706)
T 2z3z_A 133 DRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVD 212 (706)
T ss_dssp SEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEE
T ss_pred CEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeec
Confidence 654443344588888887 7655544321110 122368999999998 55543 1110
Q ss_pred ----CCcc-cceee-eeccCCCceEEEEeCCCCcEEEec
Q 039124 215 ----YNRV-DHFFI-LLEGESTGRLLRYDPPTKSNSYCV 247 (259)
Q Consensus 215 ----~~~~-~~~~~-~~e~~~~GrL~rydp~tg~~~vl~ 247 (259)
+... ...+. .-+....++|+.+|.++++.+.+.
T Consensus 213 ~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 213 YHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp CCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred cCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 0000 00000 001235578999999888776654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.018 Score=54.27 Aligned_cols=97 Identities=9% Similarity=-0.095 Sum_probs=59.8
Q ss_pred eeEEEcCCCCEEEEEcCC----CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 83 ESLEFDGLGRGPYTGLAD----GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~----G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
.+++|+++|+.+++...+ +.|+.++.+++....+ ....+....++|.++
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l--------------------------~~~~~~~~~~~~SpD- 205 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF--------------------------DSGEGSFSSASISPG- 205 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEE--------------------------CCSSCEEEEEEECTT-
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEe--------------------------ecCCCccccceECCC-
Confidence 678888888877655444 5688888655432221 111233468899995
Q ss_pred CcEEE-EeCCC--ceEEEECCCCeEEEeeecCCCCCccccccEE--------EcCCCcEEEecC
Q 039124 159 GDLYI-ADAYY--GLLVVGSKGGLATPLATQAGGKPILFANDLD--------VHKNGSIFFTDT 211 (259)
Q Consensus 159 G~L~V-aD~~~--Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~--------vd~dG~IyfTDs 211 (259)
|+.++ ++... .|+.+|.++++.+ +....++ .+.+++ +++||.+||+-+
T Consensus 206 G~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~spdg~~~~~~~ 264 (582)
T 3o4h_A 206 MKVTAGLETAREARLVTVDPRDGSVE-DLELPSK----DFSSYRPTAITWLGYLPDGRLAVVAR 264 (582)
T ss_dssp SCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS----HHHHHCCSEEEEEEECTTSCEEEEEE
T ss_pred CCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc----ChhhhhhccccceeEcCCCcEEEEEE
Confidence 76554 44333 4899999998766 4333222 233444 899999888654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.2 Score=42.82 Aligned_cols=105 Identities=9% Similarity=-0.135 Sum_probs=66.5
Q ss_pred CCceeEEEcCC----CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 80 FGPESLEFDGL----GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 80 ~gPE~ia~D~~----G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
..-.+++|.++ |..++++..+|.|..|+........ ......+....++|.
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-------------------------~~~~~~~~i~~~~~~ 124 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK-------------------------HYVGHGNAINELKFH 124 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEE-------------------------EEESCCSCEEEEEEC
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEee-------------------------eecCCCCcEEEEEEC
Confidence 34567889887 6789999999999999976542111 001123345789999
Q ss_pred CCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 156 KDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 156 ~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
+++++++++-...| |...|.++++.........+ .-.....++++++|+..++-
T Consensus 125 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 179 (366)
T 3k26_A 125 PRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG-HRDEVLSADYDLLGEKIMSC 179 (366)
T ss_dssp SSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTS-CSSCEEEEEECTTSSEEEEE
T ss_pred CCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccc-ccCceeEEEECCCCCEEEEe
Confidence 83367666544444 77779887754333321122 12357889999999866654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.31 Score=42.53 Aligned_cols=104 Identities=11% Similarity=0.049 Sum_probs=66.8
Q ss_pred CCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 79 VFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 79 l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
-..-.+++|.+ +++.++++..+|.|..|+..+.....+.. .....+....+++.++
T Consensus 118 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------------~~~~~~~v~~~~~~~~ 174 (383)
T 3ei3_B 118 GDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAK-----------------------TDSWDYWYCCVDVSVS 174 (383)
T ss_dssp TCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEEC-----------------------CCCSSCCEEEEEEETT
T ss_pred CCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEec-----------------------cCCCCCCeEEEEECCC
Confidence 34556899998 67889999999999999987653222110 0011234568999995
Q ss_pred CCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecC
Q 039124 158 TGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDT 211 (259)
Q Consensus 158 ~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDs 211 (259)
++.+++-...| |...|.++.....+.. . -...+.+++.++|. +++|-+
T Consensus 175 -~~~l~~~~~d~~i~i~d~~~~~~~~~~~-h----~~~v~~~~~~~~~~~~l~s~~ 224 (383)
T 3ei3_B 175 -RQMLATGDSTGRLLLLGLDGHEIFKEKL-H----KAKVTHAEFNPRCDWLMATSS 224 (383)
T ss_dssp -TTEEEEEETTSEEEEEETTSCEEEEEEC-S----SSCEEEEEECSSCTTEEEEEE
T ss_pred -CCEEEEECCCCCEEEEECCCCEEEEecc-C----CCcEEEEEECCCCCCEEEEEe
Confidence 77666544444 6666886554444431 1 23578899999988 666644
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.25 Score=43.24 Aligned_cols=108 Identities=8% Similarity=0.120 Sum_probs=64.7
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc--EEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVG--WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~--~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
..-.+++|.++|+.++++..+|.|..|+..... ... .. ......+....++|.++
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~-----------~~------------~~~~h~~~v~~~~~~~~ 124 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINS-----------MA------------RFSNHSSSVKTVKFNAK 124 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCE-----------EE------------ECCCSSSCCCEEEECSS
T ss_pred CceEEEEECCCCCeEEEEccCCeEEEeecccccccccc-----------hh------------hccCCccceEEEEEcCC
Confidence 345689999999989999999999999876510 000 00 01122334578999984
Q ss_pred CCcEEEEeCCCc-eEEEECCCCe------EEEeeecCCCCCccccccEEEcCC-CcEEEecC
Q 039124 158 TGDLYIADAYYG-LLVVGSKGGL------ATPLATQAGGKPILFANDLDVHKN-GSIFFTDT 211 (259)
Q Consensus 158 ~G~L~VaD~~~G-l~~v~~~gg~------~~~l~~~~~g~pl~~~Ndl~vd~d-G~IyfTDs 211 (259)
+++++++-...| |...|..++. .........+ .-...+.+++.++ +.++++-+
T Consensus 125 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~ 185 (416)
T 2pm9_A 125 QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS-SVDEVISLAWNQSLAHVFASAG 185 (416)
T ss_dssp STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC-SSCCCCEEEECSSCTTEEEEES
T ss_pred CCCEEEEEcCCCeEEEEECCCCccccccccccccccccC-CCCCeeEEEeCCCCCcEEEEEc
Confidence 366665544444 6666877663 1111111111 1235788999998 56666643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.27 Score=47.54 Aligned_cols=106 Identities=13% Similarity=0.040 Sum_probs=67.8
Q ss_pred EccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEE
Q 039124 74 EFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLR 153 (259)
Q Consensus 74 l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~ 153 (259)
.+.+.-..-.+++|.++|..+.++..+|.|..|+........ . .....+...+++
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~-~------------------------~~~~~~~v~~~~ 62 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR-S------------------------IQVTETPVRAGK 62 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-E------------------------EECCSSCEEEEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE-E------------------------EecCCCcEEEEE
Confidence 345555677899999999999999999999999976542111 0 011123456899
Q ss_pred EeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 154 FNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 154 ~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
|.++ |+.+++-...| |...+.++++......... .....+++.++|...++
T Consensus 63 ~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~ 114 (814)
T 3mkq_A 63 FIAR-KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP----DYIRSIAVHPTKPYVLS 114 (814)
T ss_dssp EEGG-GTEEEEEETTSEEEEEETTTCCEEEEEECCS----SCEEEEEECSSSSEEEE
T ss_pred EeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEecCC----CCEEEEEEeCCCCEEEE
Confidence 9995 77665544445 6666877765322222111 24678888888874443
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.4 Score=40.06 Aligned_cols=111 Identities=12% Similarity=0.028 Sum_probs=64.6
Q ss_pred EccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc--EEEEEEeecCccccccccCccccccccccccCcCCCcce
Q 039124 74 EFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVG--WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLG 151 (259)
Q Consensus 74 l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~--~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlG 151 (259)
++.+.-..-.+++|+++|+.++++..+|.|..|+..... +.... ......+....
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----------------------~~~~~~~~v~~ 62 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSD-----------------------SWRAHDSSIVA 62 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEE-----------------------EEECCSSCEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecc-----------------------eeccCCCcEEE
Confidence 344555567789999999999999999999988865431 11100 01112334568
Q ss_pred EEEeCC-CCcEEEEeCCCc-eEEEECCCCeE-------EEeeecCCCCCccccccEEEcCC--CcEEEe
Q 039124 152 LRFNKD-TGDLYIADAYYG-LLVVGSKGGLA-------TPLATQAGGKPILFANDLDVHKN--GSIFFT 209 (259)
Q Consensus 152 l~~d~~-~G~L~VaD~~~G-l~~v~~~gg~~-------~~l~~~~~g~pl~~~Ndl~vd~d--G~IyfT 209 (259)
++|.+. +++++++-...| |...|.+++.. +.+.. ..+. -....++++.++ |+..++
T Consensus 63 ~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~-~~~~-~~~v~~~~~~~~~~~~~l~~ 129 (351)
T 3f3f_A 63 IDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCT-LNDS-KGSLYSVKFAPAHLGLKLAC 129 (351)
T ss_dssp EEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEE-ECCC-SSCEEEEEECCGGGCSEEEE
T ss_pred EEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeee-eccc-CCceeEEEEcCCCCCcEEEE
Confidence 899872 266666544455 55557665421 11211 1111 124678888887 775554
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.68 Score=40.24 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=63.6
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEE
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLY 162 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~ 162 (259)
-+++|.++|+.+.++..||.|..|+.++..+..... ......+.-..++|.++ |+++
T Consensus 20 ~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~----------------------~~~~h~~~v~~~~~sp~-g~~l 76 (345)
T 3fm0_A 20 WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSV----------------------LSEGHQRTVRKVAWSPC-GNYL 76 (345)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEE----------------------ECSSCSSCEEEEEECTT-SSEE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeee----------------------eccccCCcEEEEEECCC-CCEE
Confidence 478999999999999999999988876542221000 00111223468999995 8776
Q ss_pred EEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 163 IADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 163 VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
++-+..| +...+.+++..+.+. ...+. -...+.+++.++|+..+|-+
T Consensus 77 ~s~s~D~~v~iw~~~~~~~~~~~-~~~~h-~~~v~~v~~sp~~~~l~s~s 124 (345)
T 3fm0_A 77 ASASFDATTCIWKKNQDDFECVT-TLEGH-ENEVKSVAWAPSGNLLATCS 124 (345)
T ss_dssp EEEETTSCEEEEEECCC-EEEEE-EECCC-SSCEEEEEECTTSSEEEEEE
T ss_pred EEEECCCcEEEEEccCCCeEEEE-EccCC-CCCceEEEEeCCCCEEEEEE
Confidence 6544444 444455555333322 22222 23578899999998777654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.24 Score=43.63 Aligned_cols=101 Identities=9% Similarity=0.028 Sum_probs=58.6
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
.-.+++|.++|+.+.++..+|.|..|+........ . .....+....++|.+++..
T Consensus 141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~-~------------------------~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLK-S------------------------YNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEE-E------------------------ECCCSSCEEEEEECTTCSS
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE-E------------------------EcCCCCCEEEEEEccCCCc
Confidence 34689999999999999999999999987652111 0 0111233567888875334
Q ss_pred EEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCC-cEEE
Q 039124 161 LYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNG-SIFF 208 (259)
Q Consensus 161 L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG-~Iyf 208 (259)
++++-...| |...|.++++........ ..-..++.+++.|++ .++.
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~--~~~~~v~~v~~sp~~~~~la 243 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRIDFC--ASDTIPTSVTWHPEKDDTFA 243 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCCCT--TCCSCEEEEEECTTSTTEEE
T ss_pred eeeeeccCCceEEEECCCCceeeeeeec--cccccccchhhhhcccceEE
Confidence 555555555 555577665422111111 111245677777764 3443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.2 Score=48.62 Aligned_cols=22 Identities=0% Similarity=-0.034 Sum_probs=18.5
Q ss_pred cccccEEEcCCCc-EEEecCCCC
Q 039124 193 LFANDLDVHKNGS-IFFTDTSKR 214 (259)
Q Consensus 193 ~~~Ndl~vd~dG~-IyfTDss~~ 214 (259)
+.|.+++++|||+ +|+++-.+.
T Consensus 277 ~~PhGv~~sPDGk~v~V~~~~s~ 299 (595)
T 1fwx_A 277 NNPHGCNMAPDKKHLCVAGKLSP 299 (595)
T ss_dssp SSCCCEEECTTSSEEEEECTTSS
T ss_pred CCceEEEEcCCCCEEEEeCCCCC
Confidence 4799999999998 999986653
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.69 Score=39.22 Aligned_cols=105 Identities=14% Similarity=0.035 Sum_probs=64.4
Q ss_pred ccCCCCCceeEEEcCC---CCEEEEEcCCCeEEEEeCCC-ccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 75 FVDEVFGPESLEFDGL---GRGPYTGLADGRIVRWMGEN-VGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 75 ~~~~l~gPE~ia~D~~---G~~~yt~~~~G~I~ri~~~~-~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
+.+.-..-.+++|.++ |+.++++..+|.|..|+.+. ........ ....+...
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~------------------------~~h~~~v~ 90 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ------------------------QMHTGPVL 90 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEE------------------------EECSSCEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEe------------------------ccccCCEE
Confidence 3444456678999998 68899999999999998764 21110000 11123456
Q ss_pred eEEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEE--cCCCcEEEe
Q 039124 151 GLRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDV--HKNGSIFFT 209 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~v--d~dG~IyfT 209 (259)
.++|.++ |+.+++-...| |...|.++++...+.. .. ...+.+++ .++|+.+++
T Consensus 91 ~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~----~~v~~~~~~~~~~~~~l~~ 146 (368)
T 3mmy_A 91 DVCWSDD-GSKVFTASCDKTAKMWDLSSNQAIQIAQ-HD----APVKTIHWIKAPNYSCVMT 146 (368)
T ss_dssp EEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEE-CS----SCEEEEEEEECSSCEEEEE
T ss_pred EEEECcC-CCEEEEEcCCCcEEEEEcCCCCceeecc-cc----CceEEEEEEeCCCCCEEEE
Confidence 8999984 77665544455 6667888876444332 11 23566666 666664444
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.19 Score=51.09 Aligned_cols=128 Identities=14% Similarity=0.150 Sum_probs=74.1
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEE-EEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 82 PESLEFDGLGRGPYTGLADGRIV-RWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~~G~I~-ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
..+++|. +|+.+++...+++|+ .++.++..... + .........+++.++ |+
T Consensus 340 ~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~------------------------l--~~~~~~~~~~~~SpD-G~ 391 (1045)
T 1k32_A 340 YVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK------------------------F--EENLGNVFAMGVDRN-GK 391 (1045)
T ss_dssp EEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE------------------------C--CCCCCSEEEEEECTT-SS
T ss_pred EEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE------------------------e--cCCccceeeeEECCC-CC
Confidence 4456776 665555444466777 67665542111 0 112245678999995 76
Q ss_pred EEE-EeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEEEEeC
Q 039124 161 LYI-ADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLLRYDP 238 (259)
Q Consensus 161 L~V-aD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp 238 (259)
.++ +.....|+.+|.++++...+..... ....+++++|||+ |.++.....|.. .....+.|+.+|.
T Consensus 392 ~la~~~~~~~v~~~d~~tg~~~~~~~~~~----~~v~~~~~SpDG~~la~~~~~~~~~~--------~~~~~~~i~l~d~ 459 (1045)
T 1k32_A 392 FAVVANDRFEIMTVDLETGKPTVIERSRE----AMITDFTISDNSRFIAYGFPLKHGET--------DGYVMQAIHVYDM 459 (1045)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECSS----SCCCCEEECTTSCEEEEEEEECSSTT--------CSCCEEEEEEEET
T ss_pred EEEEECCCCeEEEEECCCCceEEeccCCC----CCccceEECCCCCeEEEEecCccccc--------cCCCCCeEEEEEC
Confidence 554 5444458899999887666653322 2357899999998 444432110100 0123456777887
Q ss_pred CCCcEEEecCC
Q 039124 239 PTKSNSYCVRW 249 (259)
Q Consensus 239 ~tg~~~vl~~~ 249 (259)
++++...+...
T Consensus 460 ~~g~~~~l~~~ 470 (1045)
T 1k32_A 460 EGRKIFAATTE 470 (1045)
T ss_dssp TTTEEEECSCS
T ss_pred CCCcEEEeeCC
Confidence 77765555443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.042 Score=53.32 Aligned_cols=124 Identities=7% Similarity=0.020 Sum_probs=74.2
Q ss_pred EEccCCCCCceeEEEcCCCCEEEEE-cCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcce
Q 039124 73 LEFVDEVFGPESLEFDGLGRGPYTG-LADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLG 151 (259)
Q Consensus 73 ~l~~~~l~gPE~ia~D~~G~~~yt~-~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlG 151 (259)
.+-.+ ..|+++.+.++|+.+|+. ..+.+|..++..... ..|... ......+ ......+-+|++
T Consensus 272 ~Ipvg--~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~-~~~~~~-l~~~~~v------------~~~v~vG~gP~h 335 (595)
T 1fwx_A 272 YIPIA--NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD-AVFYEN-ADPRSAV------------VAEPELGLGPLH 335 (595)
T ss_dssp EEEEE--SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH-HHHHSC-CCGGGGE------------EECCBCCSCEEE
T ss_pred EEecC--CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccc-cccccc-cCcccce------------EEEcCCCCCcce
Confidence 34444 599999999999977765 457889888876420 000000 0000000 112345668999
Q ss_pred EEEeCCCCcEEEEeCCCc-eEEEECCCC-------eEEEeeec--CCCCC--ccccccEEEcCCCc-EEEecCCC
Q 039124 152 LRFNKDTGDLYIADAYYG-LLVVGSKGG-------LATPLATQ--AGGKP--ILFANDLDVHKNGS-IFFTDTSK 213 (259)
Q Consensus 152 l~~d~~~G~L~VaD~~~G-l~~v~~~gg-------~~~~l~~~--~~g~p--l~~~Ndl~vd~dG~-IyfTDss~ 213 (259)
++|+++ |++|++..-.+ +.+++.+++ +...++.. ..-.| .....++++++||+ +|.++-.+
T Consensus 336 ~aF~~d-G~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~s 409 (595)
T 1fwx_A 336 TAFDGR-GNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFS 409 (595)
T ss_dssp EEECTT-SEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred EEECCC-CeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCC
Confidence 999995 89999865544 777876541 00112221 11122 45567888899998 88887665
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.18 Score=43.82 Aligned_cols=104 Identities=8% Similarity=-0.020 Sum_probs=62.9
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
...+++|.++|.++.++..+|.|..|+........ . .+. ....+....++|.++ |.
T Consensus 172 ~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~------------~----------~~~-~~h~~~v~~l~fs~~-g~ 227 (343)
T 3lrv_A 172 EYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQAS------------S----------RFP-VDEEAKIKEVKFADN-GY 227 (343)
T ss_dssp CCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCC------------E----------ECC-CCTTSCEEEEEECTT-SS
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCc------------c----------EEe-ccCCCCEEEEEEeCC-CC
Confidence 46789999999989999999999999976542110 0 011 101244568999994 77
Q ss_pred EEEEeCCCceEEEECCCCeEEEeeecCCCCCcccc--ccEEEcCCCcEEEe
Q 039124 161 LYIADAYYGLLVVGSKGGLATPLATQAGGKPILFA--NDLDVHKNGSIFFT 209 (259)
Q Consensus 161 L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~--Ndl~vd~dG~IyfT 209 (259)
.+++-....|...|..++....-.....+.. ... ..++++++|+..++
T Consensus 228 ~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~ 277 (343)
T 3lrv_A 228 WMVVECDQTVVCFDLRKDVGTLAYPTYTIPE-FKTGTVTYDIDDSGKNMIA 277 (343)
T ss_dssp EEEEEESSBEEEEETTSSTTCBSSCCCBC------CCEEEEECTTSSEEEE
T ss_pred EEEEEeCCeEEEEEcCCCCcceeeccccccc-ccccceEEEECCCCCEEEE
Confidence 7665444457777877653211111111111 112 35999999997777
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.11 Score=50.39 Aligned_cols=100 Identities=17% Similarity=0.164 Sum_probs=63.6
Q ss_pred CcCCCcceEEEeCCCCcEEEEeCC----------------------CceEEEECCCCe-------EEEeeec--------
Q 039124 144 KWCGRPLGLRFNKDTGDLYIADAY----------------------YGLLVVGSKGGL-------ATPLATQ-------- 186 (259)
Q Consensus 144 ~~~grPlGl~~d~~~G~L~VaD~~----------------------~Gl~~v~~~gg~-------~~~l~~~-------- 186 (259)
..+.||-|+.+++.+|.+|+|-.. ..|+++.++++. .+.++..
T Consensus 381 T~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~ 460 (592)
T 3zwu_A 381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG 460 (592)
T ss_dssp CCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred EEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccc
Confidence 456789999999767999998432 238888765432 1222210
Q ss_pred ---------CCCCCccccccEEEcCCCcEEE-ecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEEecCC
Q 039124 187 ---------AGGKPILFANDLDVHKNGSIFF-TDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRW 249 (259)
Q Consensus 187 ---------~~g~pl~~~Ndl~vd~dG~Iyf-TDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~~ 249 (259)
.+...|..|+.|+++++|+||+ +|.+.. +..+ +....+-.++.++|.+|+++.++.+
T Consensus 461 ~~~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~-~~~~-----~~~~gnn~~~~~~~~~g~~~rf~~~ 527 (592)
T 3zwu_A 461 TPKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSS-NAGD-----FAGMGNNQMLCADPATGEIRRFMVG 527 (592)
T ss_dssp SGGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCC-CSGG-----GTTTCSCEEEEECTTTCCEEEEEEC
T ss_pred cccccccccCCCCCccCCcceEECCCCCEEEEecCCCc-cccc-----ccccccceEEEEeCCCCeEEEEEeC
Confidence 1123578899999999999987 454421 1111 1122344688888888888777643
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.26 Score=42.50 Aligned_cols=109 Identities=16% Similarity=0.126 Sum_probs=68.8
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.+.-..-.+++|.++|+.+.++..||.|..|+...... .... . .......++|.
T Consensus 193 ~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~-~~~~----------------------~---~~~~v~~~~~s 246 (319)
T 3frx_A 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA-MYTL----------------------S---AQDEVFSLAFS 246 (319)
T ss_dssp CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE-EEEE----------------------E---CCSCEEEEEEC
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-EEEe----------------------c---CCCcEEEEEEc
Confidence 34444567899999999999999999999999876521 1100 0 11235689999
Q ss_pred CCCCcEEEEeCCCceEEEECCCCeE-EEeeecCCCC---CccccccEEEcCCCcEEEecC
Q 039124 156 KDTGDLYIADAYYGLLVVGSKGGLA-TPLATQAGGK---PILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 156 ~~~G~L~VaD~~~Gl~~v~~~gg~~-~~l~~~~~g~---pl~~~Ndl~vd~dG~IyfTDs 211 (259)
++ |.++++-...++..++.+++.. ..+.....+. .-.....+++.+||+..++-+
T Consensus 247 p~-~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~ 305 (319)
T 3frx_A 247 PN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305 (319)
T ss_dssp SS-SSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE
T ss_pred CC-CCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEee
Confidence 94 8887766666776666665432 1121111111 112356899999999777643
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=95.45 E-value=1.2 Score=39.14 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=66.1
Q ss_pred ceeEEEcC-CCCEEEEEcCCCeEEEEeCCCcc--EEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 82 PESLEFDG-LGRGPYTGLADGRIVRWMGENVG--WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 82 PE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~--~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
-.++++.+ +++.++++..||.|..|+..... ... .....+.-..++|.++
T Consensus 208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~--------------------------~~~h~~~v~~v~~~p~- 260 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT--------------------------YHGHEGDINSVKFFPD- 260 (380)
T ss_dssp EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE--------------------------ECCCSSCCCEEEECTT-
T ss_pred eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE--------------------------ECCcCCCeEEEEEecC-
Confidence 44677766 78889999999999999875221 111 1112334578999994
Q ss_pred CcEEEEeCCCc-eEEEECCCCeEEEeeecC---CCCCccccccEEEcCCCcEEEecCC
Q 039124 159 GDLYIADAYYG-LLVVGSKGGLATPLATQA---GGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 159 G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~---~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
|..+++-+..| +...|..++......... ..........+++.++|++.++-+.
T Consensus 261 ~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 318 (380)
T 3iz6_a 261 GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS 318 (380)
T ss_dssp SSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT
T ss_pred CCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC
Confidence 88777666656 566688877533222211 1122335788999999997776543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.26 Score=46.30 Aligned_cols=107 Identities=10% Similarity=-0.014 Sum_probs=63.8
Q ss_pred eEEEcCCCCEEEEEc-------------------CCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccC
Q 039124 84 SLEFDGLGRGPYTGL-------------------ADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEK 144 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~-------------------~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~ 144 (259)
++.|.++++.+|++. .+.+|..|+.+...... . +....
T Consensus 192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--t---------------------I~vg~ 248 (462)
T 2ece_A 192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--S---------------------LTLGE 248 (462)
T ss_dssp CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--E---------------------EESCT
T ss_pred eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--E---------------------EecCC
Confidence 466688999889884 47889999887642111 0 11111
Q ss_pred cCCCcceEEE--eCCCCcEEEEeC-----CCc-eEEEECCCCeEEEee--e----cCCCC----C------ccccccEEE
Q 039124 145 WCGRPLGLRF--NKDTGDLYIADA-----YYG-LLVVGSKGGLATPLA--T----QAGGK----P------ILFANDLDV 200 (259)
Q Consensus 145 ~~grPlGl~~--d~~~G~L~VaD~-----~~G-l~~v~~~gg~~~~l~--~----~~~g~----p------l~~~Ndl~v 200 (259)
....|++|+| +++...+||+.. -.+ |+.+..+.|..+... + .+.+. + -..+.++.+
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 1346889988 885346788765 443 544433334322221 1 11110 0 246899999
Q ss_pred cCCCc-EEEecCCC
Q 039124 201 HKNGS-IFFTDTSK 213 (259)
Q Consensus 201 d~dG~-IyfTDss~ 213 (259)
++||+ +|+++...
T Consensus 329 S~DGrfLYVSnrg~ 342 (462)
T 2ece_A 329 SLDDKFLYLSLWGI 342 (462)
T ss_dssp CTTSCEEEEEETTT
T ss_pred CCCCCEEEEEeCCC
Confidence 99998 99998653
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.5 Score=41.47 Aligned_cols=96 Identities=14% Similarity=0.054 Sum_probs=61.4
Q ss_pred EEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEEe
Q 039124 86 EFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIAD 165 (259)
Q Consensus 86 a~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~VaD 165 (259)
++.++|+.+.++..+|.|..|+........ ......+....++|.++ |+++++-
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------------------~~~~h~~~v~~~~~~~~-~~~l~s~ 157 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSNFNLQRE-------------------------IDQAHVSEITKLKFFPS-GEALISS 157 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTTSCEEEE-------------------------ETTSSSSCEEEEEECTT-SSEEEEE
T ss_pred EEecCCCEEEEEECCCCEEEEeCCCcceee-------------------------ecccccCccEEEEECCC-CCEEEEE
Confidence 567789989999999999999877542111 00122344578999995 7766654
Q ss_pred CCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 166 AYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 166 ~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
...| |...|.++++........ -...+.+++.++|+..+|-+
T Consensus 158 s~d~~i~iwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~ 200 (420)
T 3vl1_A 158 SQDMQLKIWSVKDGSNPRTLIGH----RATVTDIAIIDRGRNVLSAS 200 (420)
T ss_dssp ETTSEEEEEETTTCCCCEEEECC----SSCEEEEEEETTTTEEEEEE
T ss_pred eCCCeEEEEeCCCCcCceEEcCC----CCcEEEEEEcCCCCEEEEEc
Confidence 4445 666687765422222211 12478899999998666543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.54 Score=40.90 Aligned_cols=111 Identities=8% Similarity=0.022 Sum_probs=64.9
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.+.-..-.+++|.++|+.+.++..||.|..|+.......... ......+.-..++|.
T Consensus 58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~-----------------------~~~~h~~~v~~v~~s 114 (345)
T 3fm0_A 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVT-----------------------TLEGHENEVKSVAWA 114 (345)
T ss_dssp SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEE-----------------------EECCCSSCEEEEEEC
T ss_pred cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEE-----------------------EccCCCCCceEEEEe
Confidence 343445578999999999999999999988876543221110 011112345689999
Q ss_pred CCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 156 KDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 156 ~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
++ |+++++-+..| |...+.+++..........+. -...+.+++.++|++.+|-+
T Consensus 115 p~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s 169 (345)
T 3fm0_A 115 PS-GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH-TQDVKHVVWHPSQELLASAS 169 (345)
T ss_dssp TT-SSEEEEEETTSCEEEEEECTTSCEEEEEEECCC-CSCEEEEEECSSSSCEEEEE
T ss_pred CC-CCEEEEEECCCeEEEEECCCCCCeEEEEEecCc-CCCeEEEEECCCCCEEEEEe
Confidence 94 77776544444 555565544222222222221 12467888888888665543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.058 Score=51.71 Aligned_cols=120 Identities=11% Similarity=-0.009 Sum_probs=73.8
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcC--CCcceEEEeCCC
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWC--GRPLGLRFNKDT 158 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--grPlGl~~d~~~ 158 (259)
.+.+++|.++|+++|+ ..+|.|+.|+..+...... .. .+.. .....++|.++
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~-----------~~-------------~~~~~~~~v~~~~~SpD- 71 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVL-----------IE-------------GKKIESLRAIRYEISPD- 71 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEE-----------EC-------------TTTTTTTTCSEEEECTT-
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEE-----------ec-------------cccccccccceEEECCC-
Confidence 4778899999997766 5788999998876532211 00 0111 13578999995
Q ss_pred CcEEEEeCC----------CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeecc
Q 039124 159 GDLYIADAY----------YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEG 227 (259)
Q Consensus 159 G~L~VaD~~----------~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~ 227 (259)
|+.++.-.. ..++.+|.++++.+.+... .+ .-.....++++|||+ |.|+..
T Consensus 72 g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~-~~~~~~~~~~SPdG~~la~~~~---------------- 133 (723)
T 1xfd_A 72 REYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPP-EV-SNAKLQYAGWGPKGQQLIFIFE---------------- 133 (723)
T ss_dssp SSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCT-TC-CSCCCSBCCBCSSTTCEEEEET----------------
T ss_pred CCEEEEEecCccceeecceeeEEEEECCCCceEeccCC-cc-ccccccccEECCCCCEEEEEEC----------------
Confidence 875443221 3477889888876555432 11 112367788999996 555432
Q ss_pred CCCceEEEEeCCCCcEEEec
Q 039124 228 ESTGRLLRYDPPTKSNSYCV 247 (259)
Q Consensus 228 ~~~GrL~rydp~tg~~~vl~ 247 (259)
+.|+.+|..+++...+.
T Consensus 134 ---~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 134 ---NNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp ---TEEEEESSSSSCCEEEE
T ss_pred ---CeEEEEECCCCceEEEe
Confidence 25777777766655544
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=95.41 E-value=1.2 Score=38.59 Aligned_cols=101 Identities=19% Similarity=0.165 Sum_probs=63.3
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
.-.+++|.+++. ++++..+|.|..|+........ . .....+....+++.++ |+
T Consensus 145 ~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~-~------------------------~~~h~~~v~~~~~~~~-~~ 197 (340)
T 1got_B 145 YLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTT-T------------------------FTGHTGDVMSLSLAPD-TR 197 (340)
T ss_dssp CEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEE-E------------------------ECCCSSCEEEEEECTT-SS
T ss_pred cEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEE-E------------------------EcCCCCceEEEEECCC-CC
Confidence 344567766665 8888999999999976542111 0 1112234568999994 88
Q ss_pred EEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 161 LYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 161 L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
++++-...| +...|..++....... +. -...+.+++.++|+.++|-+.
T Consensus 198 ~l~sg~~d~~v~~wd~~~~~~~~~~~---~h-~~~v~~v~~~p~~~~l~s~s~ 246 (340)
T 1got_B 198 LFVSGACDASAKLWDVREGMCRQTFT---GH-ESDINAICFFPNGNAFATGSD 246 (340)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEEC---CC-SSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEeCCCcEEEEECCCCeeEEEEc---CC-cCCEEEEEEcCCCCEEEEEcC
Confidence 777655555 6666877764322221 11 124788999999987776543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.37 E-value=1.3 Score=38.73 Aligned_cols=103 Identities=14% Similarity=0.175 Sum_probs=63.1
Q ss_pred CceeEEEcC--CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 81 GPESLEFDG--LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 81 gPE~ia~D~--~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
.-.++++.+ +|+.++++..||.|..|+........ ......+.-..++|.++
T Consensus 198 ~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~-------------------------~~~~h~~~v~~v~~~p~- 251 (354)
T 2pbi_B 198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ-------------------------AFETHESDVNSVRYYPS- 251 (354)
T ss_dssp CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE-------------------------EECCCSSCEEEEEECTT-
T ss_pred CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE-------------------------EecCCCCCeEEEEEeCC-
Confidence 345667755 57889999999999999976542111 00111234568999994
Q ss_pred CcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 159 GDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 159 G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
|+++++-...| +...|..++........ .........+++.++|++.++-+
T Consensus 252 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~--~~~~~~~~~~~~s~~g~~l~~g~ 303 (354)
T 2pbi_B 252 GDAFASGSDDATCRLYDLRADREVAIYSK--ESIIFGASSVDFSLSGRLLFAGY 303 (354)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECC--TTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEcC--CCcccceeEEEEeCCCCEEEEEE
Confidence 77776555555 56668776642222211 11123457889999998776643
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.38 Score=41.20 Aligned_cols=95 Identities=12% Similarity=0.053 Sum_probs=57.9
Q ss_pred CCceeEEEcCCCCEE-EEEcCC--C--eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 80 FGPESLEFDGLGRGP-YTGLAD--G--RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~-yt~~~~--G--~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
....+++|.++|+.+ |+...+ + .|+.++.++....... . . .+ ..++++
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~-----------------------~-~--~~-~~~~~w 111 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL-----------------------E-A--KN-IRSLEW 111 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE-----------------------E-E--SE-EEEEEE
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE-----------------------c-C--CC-ccceeE
Confidence 345678999999754 444332 3 4888887665222110 0 0 11 457788
Q ss_pred eCCCCc-EEEEeC---------------------------CCceEEEECCCCeE-EEeeecCCCCCccccccEEEcCCCc
Q 039124 155 NKDTGD-LYIADA---------------------------YYGLLVVGSKGGLA-TPLATQAGGKPILFANDLDVHKNGS 205 (259)
Q Consensus 155 d~~~G~-L~VaD~---------------------------~~Gl~~v~~~gg~~-~~l~~~~~g~pl~~~Ndl~vd~dG~ 205 (259)
.++ |+ |+++.. ...|+.++.++++. +.+.. + ...++++.+||
T Consensus 112 spd-g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-----~--~~~~~~~spdg- 182 (347)
T 2gop_A 112 NED-SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-----P--RFSSGIWHRDK- 182 (347)
T ss_dssp CTT-SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-----E--TTCEEEEETTE-
T ss_pred CCC-CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-----C--CcccccCCCCe-
Confidence 885 54 544421 23488899998876 55543 1 46788999999
Q ss_pred EEEec
Q 039124 206 IFFTD 210 (259)
Q Consensus 206 IyfTD 210 (259)
++|+-
T Consensus 183 ~~~~~ 187 (347)
T 2gop_A 183 IVVNV 187 (347)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77765
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.16 Score=45.88 Aligned_cols=104 Identities=12% Similarity=0.090 Sum_probs=62.1
Q ss_pred CceeEEEcCCCCEE-EEEcCCCeEEEEeCC--Ccc-EEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 81 GPESLEFDGLGRGP-YTGLADGRIVRWMGE--NVG-WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 81 gPE~ia~D~~G~~~-yt~~~~G~I~ri~~~--~~~-~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
...+++|.++|+.+ +++..+|.|..|+.. ... ...+. .......+..++|.+
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~------------------------~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK------------------------RFCFSKRPNAISIAE 159 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE------------------------EEECSSCEEEEEECT
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee------------------------cccCCCCceEEEEcC
Confidence 45789999999975 788889998888765 331 11110 001234567999999
Q ss_pred CCCcEE-EEeCCCceEEEECCCCeEEE-eeecCCCCCccccccEEEcCC---CcEEEec
Q 039124 157 DTGDLY-IADAYYGLLVVGSKGGLATP-LATQAGGKPILFANDLDVHKN---GSIFFTD 210 (259)
Q Consensus 157 ~~G~L~-VaD~~~Gl~~v~~~gg~~~~-l~~~~~g~pl~~~Ndl~vd~d---G~IyfTD 210 (259)
+ |..+ +++....++.++..++.... ......+ .....+++++.++ |+..+|-
T Consensus 160 ~-~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~l~s~ 216 (450)
T 2vdu_B 160 D-DTTVIIADKFGDVYSIDINSIPEEKFTQEPILG-HVSMLTDVHLIKDSDGHQFIITS 216 (450)
T ss_dssp T-SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEE-CSSCEEEEEEEECTTSCEEEEEE
T ss_pred C-CCEEEEEeCCCcEEEEecCCcccccccceeeec-ccCceEEEEEcCCCCCCcEEEEE
Confidence 5 6554 45544447788876553221 1111111 1235778889988 7655553
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.94 Score=40.01 Aligned_cols=100 Identities=13% Similarity=-0.035 Sum_probs=59.7
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
..-.+++|.++|+.++++..+|.|..|+........ . .....+....++++. .
T Consensus 135 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~------------------------~~~~~~~v~~~~~~~--~ 187 (401)
T 4aez_A 135 TYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR-T------------------------MAGHQARVGCLSWNR--H 187 (401)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-E------------------------ECCCSSCEEEEEEET--T
T ss_pred CCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE-E------------------------ecCCCCceEEEEECC--C
Confidence 345689999999999999999999999876542111 0 011123445777854 2
Q ss_pred cEEEEeCCCceEEEECCC-Ce-EEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 160 DLYIADAYYGLLVVGSKG-GL-ATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 160 ~L~VaD~~~Gl~~v~~~g-g~-~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
.|+.+.....|...|... +. ...+. .. -....++++.++|+.+++-+
T Consensus 188 ~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~----~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 188 VLSSGSRSGAIHHHDVRIANHQIGTLQ-GH----SSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp EEEEEETTSEEEEEETTSSSCEEEEEE-CC----SSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEcCCCCEEEEecccCcceeeEEc-CC----CCCeeEEEEcCCCCEEEEEe
Confidence 444444444466667763 22 22221 11 12467888888888666543
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.28 E-value=1 Score=37.25 Aligned_cols=101 Identities=17% Similarity=0.061 Sum_probs=62.3
Q ss_pred CCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 79 VFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 79 l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
-....++++.+ +++.++++..+|.|..|+.... ...+ . ....+....+++.++
T Consensus 142 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~------------------------~-~~~~~~i~~~~~~~~ 195 (313)
T 3odt_A 142 NASVWDAKVVSFSENKFLTASADKTIKLWQNDKV-IKTF------------------------S-GIHNDVVRHLAVVDD 195 (313)
T ss_dssp SSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE-EEEE------------------------C-SSCSSCEEEEEEEET
T ss_pred CCceeEEEEccCCCCEEEEEECCCCEEEEecCce-EEEE------------------------e-ccCcccEEEEEEcCC
Confidence 34455677766 7888999999999999984322 1111 0 112334568899984
Q ss_pred CCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 158 TGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 158 ~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
+.++++.....|..+|..+++........ -...+.+++.++|.++.+.
T Consensus 196 -~~~~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~l~~~~ 243 (313)
T 3odt_A 196 -GHFISCSNDGLIKLVDMHTGDVLRTYEGH----ESFVYCIKLLPNGDIVSCG 243 (313)
T ss_dssp -TEEEEEETTSEEEEEETTTCCEEEEEECC----SSCEEEEEECTTSCEEEEE
T ss_pred -CeEEEccCCCeEEEEECCchhhhhhhhcC----CceEEEEEEecCCCEEEEe
Confidence 78665655555777788766533222211 1246788888888755544
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.051 Score=46.63 Aligned_cols=60 Identities=13% Similarity=-0.038 Sum_probs=40.0
Q ss_pred CcceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeee---cCCCCCccccccEEEcCCCcEEEe
Q 039124 148 RPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLAT---QAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 148 rPlGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~---~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
.-..++|++ +|.||++ ....|+++++.++.-..+.. .+....-+....+.+|++|.+|.+
T Consensus 42 ~~~~laf~P-~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav 104 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV 104 (236)
T ss_dssp TCSEEEECT-TSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE
T ss_pred cceeEEECC-CccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe
Confidence 345899999 6999998 33449999986622222211 111112344789999999999998
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.36 Score=42.72 Aligned_cols=60 Identities=7% Similarity=0.053 Sum_probs=40.5
Q ss_pred cceEEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 149 PLGLRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 149 PlGl~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
-..++|.++ |+++++-...| |...|.++++ .+..-..|. -...++|++.|||+..+|-+.
T Consensus 272 V~~~~~Spd-g~~lasgs~D~~V~iwd~~~~~--~~~~~~~gH-~~~V~~v~fSpdg~~laS~S~ 332 (365)
T 4h5i_A 272 ITSMDVDMK-GELAVLASNDNSIALVKLKDLS--MSKIFKQAH-SFAITEVTISPDSTYVASVSA 332 (365)
T ss_dssp EEEEEECTT-SCEEEEEETTSCEEEEETTTTE--EEEEETTSS-SSCEEEEEECTTSCEEEEEET
T ss_pred eEeEEECCC-CCceEEEcCCCEEEEEECCCCc--EEEEecCcc-cCCEEEEEECCCCCEEEEEeC
Confidence 357899994 88876544444 7777988874 232222332 235789999999998887653
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.11 E-value=1.1 Score=38.09 Aligned_cols=110 Identities=14% Similarity=0.098 Sum_probs=63.4
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.+.-..-.+++|.++|+.+.++..+|.|..|+.+........ ......+.-..++|.
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-----------------------~~~~h~~~v~~~~~~ 64 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLID-----------------------TLTGHEGPVWRVDWA 64 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEE-----------------------EECCCSSCEEEEEEC
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeee-----------------------EecCCCCcEEEEEeC
Confidence 333445668999999999999999999998887533111110 011112334678887
Q ss_pred CC-CCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCC--CcEEEec
Q 039124 156 KD-TGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKN--GSIFFTD 210 (259)
Q Consensus 156 ~~-~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~d--G~IyfTD 210 (259)
++ +++++++-...| |...+.+++....+... .+ .-.....+++.++ |+..++-
T Consensus 65 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~~l~~~ 121 (379)
T 3jrp_A 65 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AV-HSASVNSVQWAPHEYGPLLLVA 121 (379)
T ss_dssp CGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE-CC-CSSCEEEEEECCGGGCSEEEEE
T ss_pred CCCCCCEEEEeccCCEEEEEEcCCCceeEeeee-cC-CCcceEEEEeCCCCCCCEEEEe
Confidence 52 156655444444 66667777643333221 11 1124678888887 7655543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.52 Score=45.00 Aligned_cols=105 Identities=9% Similarity=-0.086 Sum_probs=62.2
Q ss_pred CceeEEEcCCCCEEEEEcCC---------CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcce
Q 039124 81 GPESLEFDGLGRGPYTGLAD---------GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLG 151 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~---------G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlG 151 (259)
...+++|.++|+.+.++..+ +.|+.|+.++.....+ . ...........
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l-----------~------------~~~~~~~~~~~ 118 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL-----------D------------PPEVSNAKLQY 118 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC-----------C------------CTTCCSCCCSB
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEec-----------c------------CCccccccccc
Confidence 47899999999966655443 6788888765522111 0 00011123557
Q ss_pred EEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCC--------------ccccccEEEcCCCc-EEEe
Q 039124 152 LRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKP--------------ILFANDLDVHKNGS-IFFT 209 (259)
Q Consensus 152 l~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~p--------------l~~~Ndl~vd~dG~-IyfT 209 (259)
++|.++ |+.++.-....|+.++.++++...+........ +....+++.+|||+ |+++
T Consensus 119 ~~~SPd-G~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~ 190 (723)
T 1xfd_A 119 AGWGPK-GQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA 190 (723)
T ss_dssp CCBCSS-TTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred cEECCC-CCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEE
Confidence 888885 755443333568888988887665543211100 12336899999998 5554
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.45 Score=42.03 Aligned_cols=100 Identities=12% Similarity=0.061 Sum_probs=65.2
Q ss_pred ceeEEEcCCCCEEEEE--cCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 82 PESLEFDGLGRGPYTG--LADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~--~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
..+++|.++|+.+.++ ..++.|..|+..... ..+. .+ ..+.-..++|.+ +|
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~-~~~~------------------------~~-~~~~V~~v~fsp-dg 188 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLT-EKFE------------------------IE-TRGEVKDLHFST-DG 188 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTTE-EEEE------------------------EE-CSSCCCEEEECT-TS
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc-EEEE------------------------eC-CCCceEEEEEcc-CC
Confidence 4579999999976654 367889999987652 1111 11 123457899999 48
Q ss_pred cEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 160 DLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 160 ~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
.++++-...++.+++..++....... ..+ .-...+.+++.+||...++-
T Consensus 189 ~~l~s~s~~~~~~~~~~~~~~~~~~~-~~~-~~~~v~~v~fspdg~~l~~~ 237 (365)
T 4h5i_A 189 KVVAYITGSSLEVISTVTGSCIARKT-DFD-KNWSLSKINFIADDTVLIAA 237 (365)
T ss_dssp SEEEEECSSCEEEEETTTCCEEEEEC-CCC-TTEEEEEEEEEETTEEEEEE
T ss_pred ceEEeccceeEEEEEeccCcceeeee-cCC-CCCCEEEEEEcCCCCEEEEE
Confidence 88877667778888877664322211 111 12356789999999866653
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=94.99 E-value=1.1 Score=39.52 Aligned_cols=118 Identities=10% Similarity=-0.012 Sum_probs=61.1
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
.-.+++|.++|+.+.++. ++.+..|+........ ....... . ..+ +. . ............-..++|.++ |+
T Consensus 66 ~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~-~l~~~~~-~-~~~-~~-~--~~~~~~~~~~~~v~~v~~s~d-g~ 136 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA-RLSDDSA-A-NKD-PE-N--LNTSSSPSSDLYIRSVCFSPD-GK 136 (393)
T ss_dssp CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE-EECC-----------------------CCCCBEEEEEECTT-SS
T ss_pred EEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE-EecCccc-c-ccc-cc-c--ccccccCCCceeEEEEEECCC-CC
Confidence 345899999999777765 6777777765442211 1100000 0 000 00 0 000000000111347899994 87
Q ss_pred EEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 161 LYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 161 L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
++++-...| |...|.++++...... +. -...+.+++.++|+..+|-+
T Consensus 137 ~l~s~~~d~~i~iwd~~~~~~~~~~~---~h-~~~v~~~~~~p~~~~l~s~s 184 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENRKIVMILQ---GH-EQDIYSLDYFPSGDKLVSGS 184 (393)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEC---CC-SSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEc---cC-CCCEEEEEEcCCCCEEEEec
Confidence 776655555 6666888775333222 21 12467899999998666644
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.52 Score=40.78 Aligned_cols=104 Identities=12% Similarity=-0.154 Sum_probs=65.5
Q ss_pred CceeEEEcC--CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 81 GPESLEFDG--LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 81 gPE~ia~D~--~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
.-.++++.+ +|+.+.++..||.|..|+......... . ..+.......++|+++
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~--~----------------------~~~~~~~i~~~~~~pd- 181 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIV--H----------------------SAKSDVEYSSGVLHKD- 181 (343)
T ss_dssp CEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEE--E----------------------CCCSSCCCCEEEECTT-
T ss_pred CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE--E----------------------ecCCCCceEEEEECCC-
Confidence 456889999 999888899999999999876532110 0 0111223568999994
Q ss_pred CcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 159 GDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 159 G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
|.++++-...| |...|..+++.. .....+..-...+.+++.++|...++-+
T Consensus 182 g~~lasg~~dg~i~iwd~~~~~~~--~~~~~~~h~~~v~~l~fs~~g~~l~s~~ 233 (343)
T 3lrv_A 182 SLLLALYSPDGILDVYNLSSPDQA--SSRFPVDEEAKIKEVKFADNGYWMVVEC 233 (343)
T ss_dssp SCEEEEECTTSCEEEEESSCTTSC--CEECCCCTTSCEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCCC--ccEEeccCCCCEEEEEEeCCCCEEEEEe
Confidence 88877644445 666688776522 0112221123578999999998665543
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.45 Score=45.16 Aligned_cols=104 Identities=8% Similarity=-0.031 Sum_probs=66.1
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
...++++.++|+.+.++..||.|..|+..+........ ....+....++|.++ |.
T Consensus 450 ~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~------------------------~~h~~~v~~v~fspd-g~ 504 (611)
T 1nr0_A 450 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT------------------------IVHPAEITSVAFSNN-GA 504 (611)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE------------------------EECSSCEEEEEECTT-SS
T ss_pred CceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec------------------------cCCCCceEEEEECCC-CC
Confidence 45789999999999999999999888876542211100 011234578999995 87
Q ss_pred EEEE-eCCCceEEEECCC-CeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 161 LYIA-DAYYGLLVVGSKG-GLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 161 L~Va-D~~~Gl~~v~~~g-g~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
++++ +....+...+..+ ++ .+....-+..-...+.+++.|||+..+|-+
T Consensus 505 ~las~s~d~~v~~w~~~~~~~--~~~~~~~~~H~~~V~~v~fspdg~~lasgs 555 (611)
T 1nr0_A 505 FLVATDQSRKVIPYSVANNFE--LAHTNSWTFHTAKVACVSWSPDNVRLATGS 555 (611)
T ss_dssp EEEEEETTSCEEEEEGGGTTE--ESCCCCCCCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEcCCCCEEEEEcCCCCc--eeeeeeeeecccceeEEEECCCCCEEEEEE
Confidence 7665 4444466667765 42 222211111223578999999999877744
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=94.72 E-value=0.25 Score=42.91 Aligned_cols=107 Identities=14% Similarity=0.097 Sum_probs=65.7
Q ss_pred CCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 77 DEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 77 ~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
+.-..-.+++|.++|+.+.++..||.|..|+........ .. .........++|++
T Consensus 211 ~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~------------------------~~-~~~~~~v~~v~~sp 265 (343)
T 2xzm_R 211 AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ------------------------RE-FDAGSTINQIAFNP 265 (343)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCS------------------------EE-EECSSCEEEEEECS
T ss_pred CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccc------------------------ee-ecCCCcEEEEEECC
Confidence 333456689999999999999999999999873221000 00 00122356899999
Q ss_pred CCCcEEEEeCCCceEEEECCCCeEE---Eeeec----C---CCCCccccccEEEcCCCcEEEec
Q 039124 157 DTGDLYIADAYYGLLVVGSKGGLAT---PLATQ----A---GGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 157 ~~G~L~VaD~~~Gl~~v~~~gg~~~---~l~~~----~---~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
+ +.++++....++...+..++... .+... . .+ .....+.++++++|...++-
T Consensus 266 ~-~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~sg 327 (343)
T 2xzm_R 266 K-LQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG-KNPQCTSLAWNALGKKLFAG 327 (343)
T ss_dssp S-SCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC-SCCCEEEEEECSSSCCEEEE
T ss_pred C-CCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcC-CCCceEEEEECCCCCeEEEe
Confidence 4 88776655667777787655321 11100 0 01 11246789999999866653
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.72 E-value=1.4 Score=39.56 Aligned_cols=152 Identities=9% Similarity=-0.055 Sum_probs=74.2
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEE-EEEEeecCccccccccCcccccccc-c-cccCcCCCcceE
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWE-TFAIVTSNWSEKLCARGVDSTTAKQ-W-KHEKWCGRPLGL 152 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~-~fa~~~~~~~~~~~~g~~~~~~~~~-~-~~~~~~grPlGl 152 (259)
.+.-....+++|. +|+.++++..+|.|..|+....... .+... ......|.....+ +... . ..........++
T Consensus 238 ~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~i 313 (450)
T 2vdu_B 238 FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYN--SLIKPYLNDQHLA-PPRFQNENNDIIEFAVSKI 313 (450)
T ss_dssp CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECH--HHHGGGCCTTSBC-----------CBCCCEEEE
T ss_pred cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecch--hhhhhhhhhcccc-cccccccccccceEEEEEE
Confidence 3444567889999 9999999999999999997665322 12110 0000001000000 0000 0 000111223578
Q ss_pred EEeCCCCcEEE-EeCCCc-eEEEEC---CCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeecc
Q 039124 153 RFNKDTGDLYI-ADAYYG-LLVVGS---KGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEG 227 (259)
Q Consensus 153 ~~d~~~G~L~V-aD~~~G-l~~v~~---~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~ 227 (259)
++.++ |..++ +....+ |..++. .++..+.+. .+.+. ..+.++++++++ +|++-.+..-.. ..
T Consensus 314 ~~~~~-~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~-~~~~~--~~v~~~~~~~~~-~~v~~~~~~~~~--------~~ 380 (450)
T 2vdu_B 314 IKSKN-LPFVAFFVEATKCIIILEMSEKQKGDLALKQ-IITFP--YNVISLSAHNDE-FQVTLDNKESSG--------VQ 380 (450)
T ss_dssp EECSS-SSEEEEEETTCSEEEEEEECSSSTTCEEEEE-EEECS--SCEEEEEEETTE-EEEEECCTTCCS--------SC
T ss_pred EEeCC-CCEEEEEECCCCeEEEEEeccCCCCceeecc-EeccC--CceEEEEecCCc-EEEEEecccCCC--------CC
Confidence 89885 66544 432344 444444 333333332 22222 457899999954 555543321000 00
Q ss_pred CCCceEEEEeCCCCcEE
Q 039124 228 ESTGRLLRYDPPTKSNS 244 (259)
Q Consensus 228 ~~~GrL~rydp~tg~~~ 244 (259)
...=++|.++..+++.+
T Consensus 381 ~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 381 KNFAKFIEYNLNENSFV 397 (450)
T ss_dssp CCSEEEEEEETTTTEEE
T ss_pred CcceEEEEEEcCCCeEE
Confidence 11127888888766654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=94.63 E-value=0.63 Score=45.28 Aligned_cols=123 Identities=16% Similarity=0.195 Sum_probs=68.7
Q ss_pred CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCC-cceEEEeCCCCcEEEEeCCCc
Q 039124 91 GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGR-PLGLRFNKDTGDLYIADAYYG 169 (259)
Q Consensus 91 G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gr-PlGl~~d~~~G~L~VaD~~~G 169 (259)
++.+|+...++.|+.++...+. ..+......... ......|.. .-|++++. +.+|+......
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~-~~W~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~--~~v~v~~~dg~ 128 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGK-ELWRYDPEVAKV--------------KARTSCCDAVNRGVALWG--DKVYVGTLDGR 128 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCC-EEEEECCCCCGG--------------GGGGCTTCSCCCCCEEEB--TEEEEECTTSE
T ss_pred CCEEEEECCCCeEEEEECCCCh-hceEECCCCCcc--------------ccccccccCCccceEEEC--CEEEEEcCCCE
Confidence 4458888889999999986542 223221100000 000112221 23667763 78999876666
Q ss_pred eEEEECCCCeEEEeeecCCCC--CccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEE
Q 039124 170 LLVVGSKGGLATPLATQAGGK--PILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNS 244 (259)
Q Consensus 170 l~~v~~~gg~~~~l~~~~~g~--pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~ 244 (259)
|+.+|.++|+.. +.....+. .......-.+. +|.||+..+...+ ...|+|+.||++||+..
T Consensus 129 l~alD~~tG~~~-W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~------------~~~g~v~a~D~~tG~~~ 191 (668)
T 1kv9_A 129 LIALDAKTGKAI-WSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEY------------GVRGFVSAYDADTGKLA 191 (668)
T ss_dssp EEEEETTTCCEE-EEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTT------------CCBCEEEEEETTTCCEE
T ss_pred EEEEECCCCCEe-eeeccCCCCCcceecCCCEEE-CCEEEEeCCCCCc------------CCCCEEEEEECCCCcEE
Confidence 999999988633 32222111 01111122232 6789987665321 24678999999888764
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=94.62 E-value=2.4 Score=40.06 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=52.4
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.+.-..-.+++|.++|+.+.++..||.|..|+........ .... . . .......+...+++|.
T Consensus 187 ~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~-~~~~----~-~------------~~~~~h~~~V~~v~~s 248 (611)
T 1nr0_A 187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG-VFED----D-S------------LKNVAHSGSVFGLTWS 248 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-ECBC----T-T------------SSSCSSSSCEEEEEEC
T ss_pred ccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEee-eecc----c-c------------ccccccCCCEEEEEEC
Confidence 3333456789999999999999999999999975442111 0000 0 0 0001223456789999
Q ss_pred CCCCcEEEEeCCCc-eEEEECCCCe
Q 039124 156 KDTGDLYIADAYYG-LLVVGSKGGL 179 (259)
Q Consensus 156 ~~~G~L~VaD~~~G-l~~v~~~gg~ 179 (259)
++ |..+++-+..+ |...|.++++
T Consensus 249 pd-g~~l~s~s~D~~v~lWd~~~~~ 272 (611)
T 1nr0_A 249 PD-GTKIASASADKTIKIWNVATLK 272 (611)
T ss_dssp TT-SSEEEEEETTSEEEEEETTTTE
T ss_pred CC-CCEEEEEeCCCeEEEEeCCCCc
Confidence 94 87776555555 5555777654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.15 Score=44.40 Aligned_cols=103 Identities=9% Similarity=-0.047 Sum_probs=56.8
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
.-.+++|.++|+.+.++..+|.|..|+.....+... .......+.-..++|.++ |+
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~-----------------------~~~~~h~~~v~~~~~s~~-~~ 68 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHA-----------------------RTFSDHDKIVTCVDWAPK-SN 68 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEEC-----------------------CCBCCCSSCEEEEEECTT-TC
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEE-----------------------EEEecCCceEEEEEEeCC-CC
Confidence 345789999999888888999988888765421110 011122334578999995 76
Q ss_pred EEEEeCCCc-eEEEECCCCe-EEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 161 LYIADAYYG-LLVVGSKGGL-ATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 161 L~VaD~~~G-l~~v~~~gg~-~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
++++-...| |...+.+++. ...... ..+ .-...+.+++.++|+..++
T Consensus 69 ~l~s~s~d~~v~vwd~~~~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~l~~ 117 (377)
T 3dwl_C 69 RIVTCSQDRNAYVYEKRPDGTWKQTLV-LLR-LNRAATFVRWSPNEDKFAV 117 (377)
T ss_dssp CEEEEETTSSEEEC------CCCCEEE-CCC-CSSCEEEEECCTTSSCCEE
T ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeE-ecc-cCCceEEEEECCCCCEEEE
Confidence 665544444 5555776654 111111 111 1124678888888874444
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.73 Score=44.59 Aligned_cols=77 Identities=9% Similarity=-0.004 Sum_probs=51.5
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEeCCCccE-----EEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 82 PESLEFDGLGRGPYTGLADGRIVRWMGENVGW-----ETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~-----~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
-.+++|.++|+.++++..||+|.-|+..++.. ..+.. ... . ...| .+.-..++|.+
T Consensus 132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~t--------i~~-~---------~~gh-~~~V~sVawSP 192 (588)
T 2j04_A 132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESS--------IRL-S---------DAGS-KDWVTHIVWYE 192 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEE--------EEC-S---------CTTC-CCCEEEEEEET
T ss_pred EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeee--------eec-c---------cccc-cccEEEEEEcC
Confidence 56899999999999999999999999876521 00000 000 0 0011 23456899999
Q ss_pred CCCcEEEEeCCCceEEEECCCCe
Q 039124 157 DTGDLYIADAYYGLLVVGSKGGL 179 (259)
Q Consensus 157 ~~G~L~VaD~~~Gl~~v~~~gg~ 179 (259)
+ | |.++-..+.+..++.+++.
T Consensus 193 d-g-Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 193 D-V-LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp T-E-EEEEETTCCEEEECCCSSS
T ss_pred C-c-EEEEeCCCeEEEEECCCCc
Confidence 4 7 6666666678888888765
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.46 Score=40.33 Aligned_cols=32 Identities=22% Similarity=0.087 Sum_probs=26.3
Q ss_pred CCceeEEEcCC---CCEEEEEcCCCeEEEEeCCCc
Q 039124 80 FGPESLEFDGL---GRGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 80 ~gPE~ia~D~~---G~~~yt~~~~G~I~ri~~~~~ 111 (259)
..-.+++|.++ |+.++++..+|.|..|+....
T Consensus 66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 100 (357)
T 3i2n_A 66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAP 100 (357)
T ss_dssp SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSC
T ss_pred CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCC
Confidence 45578899887 688999999999999987654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.23 Score=43.09 Aligned_cols=108 Identities=10% Similarity=-0.014 Sum_probs=58.5
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-EEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVG-WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~-~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
..-.+++|.++|+.++++..||.|..|+..... +... .......+....++|.++
T Consensus 56 ~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~-----------------------~~~~~~~~~v~~~~~~~~- 111 (377)
T 3dwl_C 56 KIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT-----------------------LVLLRLNRAATFVRWSPN- 111 (377)
T ss_dssp SCEEEEEECTTTCCEEEEETTSSEEEC------CCCCE-----------------------EECCCCSSCEEEEECCTT-
T ss_pred ceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeee-----------------------eEecccCCceEEEEECCC-
Confidence 445689999999989999999999999876541 0000 011122344568999985
Q ss_pred CcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 159 GDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 159 G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
|+++++-...| |...+.+++....+.....+..-...+.+++.++|+..++-+
T Consensus 112 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 165 (377)
T 3dwl_C 112 EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC 165 (377)
T ss_dssp SSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence 66555444444 555576665310011112221123578899999988666543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.41 Score=46.70 Aligned_cols=123 Identities=13% Similarity=0.146 Sum_probs=68.3
Q ss_pred CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCC-CcceEEEeCCCCcEEEEeCCCc
Q 039124 91 GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCG-RPLGLRFNKDTGDLYIADAYYG 169 (259)
Q Consensus 91 G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g-rPlGl~~d~~~G~L~VaD~~~G 169 (259)
+..+|+...+++|+.++...+. +.+......... ......|+ ...|++++ ++.+|+......
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~-~~W~~~~~~~~~--------------~~~~~~~~~~~~~~a~~--~~~v~v~~~dg~ 139 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGN-RIWTYDPQIDRS--------------TGFKGCCDVVNRGVALW--KGKVYVGAWDGR 139 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTE-EEEEECCCCCGG--------------GGGGSSSCSCCCCCEEE--TTEEEEECTTSE
T ss_pred CCEEEEECCCCeEEEEECCCCc-EEEEEcCCCCcc--------------ccccccccCCCCCceEE--CCEEEEEcCCCE
Confidence 4458888888999999986652 233221110000 00000111 12366776 379999876667
Q ss_pred eEEEECCCCeEEEeeecCC-C-CC-ccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEE
Q 039124 170 LLVVGSKGGLATPLATQAG-G-KP-ILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNS 244 (259)
Q Consensus 170 l~~v~~~gg~~~~l~~~~~-g-~p-l~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~ 244 (259)
|+.+|.++|+.. +..... . .. ........++ +|.||++.+...+ ...|.|+.||++||+..
T Consensus 140 l~alD~~tG~~~-W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~------------~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 140 LIALDAATGKEV-WHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEY------------GVRGYITAYDAETGERK 203 (677)
T ss_dssp EEEEETTTCCEE-EEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTT------------CCBCEEEEEETTTCCEE
T ss_pred EEEEECCCCCEE-eeecCCcCcCcCcccccCcEEE-CCEEEEEeccccc------------CCCCEEEEEECCCCcEE
Confidence 999999888633 322221 1 00 1112222333 6789998765332 23578999999888764
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=94.53 E-value=1.9 Score=36.47 Aligned_cols=114 Identities=9% Similarity=0.009 Sum_probs=65.1
Q ss_pred eEEccCCCCCceeEEEcCC----CCEEEEEcCCCeEEEEeCCCcc-EEEEEEeecCccccccccCccccccccccccCcC
Q 039124 72 KLEFVDEVFGPESLEFDGL----GRGPYTGLADGRIVRWMGENVG-WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWC 146 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~----G~~~yt~~~~G~I~ri~~~~~~-~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 146 (259)
..+..+.-..-.+++|.++ ...++++..++.|..|+..... ...+... ......
T Consensus 11 ~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~---------------------~~~~~~ 69 (366)
T 3k26_A 11 NSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSY---------------------VDADAD 69 (366)
T ss_dssp EEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEE---------------------ECSCTT
T ss_pred EEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeec---------------------cccCCC
Confidence 3455555556678999873 4567888888888888876432 2221100 001122
Q ss_pred CCcceEEEeCCC---CcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcC-CCcEEEec
Q 039124 147 GRPLGLRFNKDT---GDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHK-NGSIFFTD 210 (259)
Q Consensus 147 grPlGl~~d~~~---G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTD 210 (259)
+....++|.++. |.++++-...| |...+.++++........ -...+.+++.+ +|++.++-
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~l~s~ 134 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGH----GNAINELKFHPRDPNLLLSV 134 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESC----CSCEEEEEECSSCTTEEEEE
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCC----CCcEEEEEECCCCCCEEEEE
Confidence 345688888731 44555444445 666687766533222211 13567888888 77766553
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.53 E-value=2.2 Score=37.19 Aligned_cols=103 Identities=15% Similarity=0.121 Sum_probs=63.3
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC-C
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD-T 158 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~-~ 158 (259)
..-.+++|.+++..++++..||.|..|+.+...... .+ ....+....+++.+. +
T Consensus 155 ~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~-~~------------------------~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 155 NYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ-SF------------------------HGHGADVLCLDLAPSET 209 (354)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-EE------------------------ECCSSCEEEEEECCCSS
T ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE-EE------------------------cCCCCCeEEEEEEeCCC
Confidence 344678899999889999999999999986552211 00 011122345666542 3
Q ss_pred CcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 159 GDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 159 G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
|+++++-...| +...|..+++..... .+. -...+.+++.|+|+.++|-+
T Consensus 210 g~~l~sgs~Dg~v~~wd~~~~~~~~~~---~~h-~~~v~~v~~~p~~~~l~s~s 259 (354)
T 2pbi_B 210 GNTFVSGGCDKKAMVWDMRSGQCVQAF---ETH-ESDVNSVRYYPSGDAFASGS 259 (354)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEE---CCC-SSCEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEe---cCC-CCCeEEEEEeCCCCEEEEEe
Confidence 56665544444 777788877532222 121 13578899999998776644
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.50 E-value=2 Score=41.07 Aligned_cols=110 Identities=15% Similarity=0.061 Sum_probs=66.5
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.+.-..-.+++|.++|+.++++..||.|..|+..+..... ... ........-..++|.
T Consensus 469 ~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~--~~~--------------------~~~~h~~~v~~~~~~ 526 (694)
T 3dm0_A 469 VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT--ISE--------------------GGEGHRDWVSCVRFS 526 (694)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE--ECS--------------------STTSCSSCEEEEEEC
T ss_pred eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCccee--ecc--------------------CCCCCCCcEEEEEEe
Confidence 3444456789999999989999999999999875541111 100 001112224578888
Q ss_pred CCCC--cEEEE-eCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 156 KDTG--DLYIA-DAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 156 ~~~G--~L~Va-D~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
++ + .++++ .....|...|..++....... +. -...+.++++++|++.+|-+.
T Consensus 527 ~~-~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~---~h-~~~v~~v~~spdg~~l~sg~~ 581 (694)
T 3dm0_A 527 PN-TLQPTIVSASWDKTVKVWNLSNCKLRSTLA---GH-TGYVSTVAVSPDGSLCASGGK 581 (694)
T ss_dssp SC-SSSCEEEEEETTSCEEEEETTTCCEEEEEC---CC-SSCEEEEEECTTSSEEEEEET
T ss_pred CC-CCcceEEEEeCCCeEEEEECCCCcEEEEEc---CC-CCCEEEEEEeCCCCEEEEEeC
Confidence 74 4 34444 333346666887765332222 21 235788999999997776543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=94.47 E-value=0.25 Score=41.91 Aligned_cols=103 Identities=9% Similarity=-0.074 Sum_probs=62.9
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-EEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVG-WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~-~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
..-.+++|.++|+.++++..+|.|..|+.+... ..... ......+....+++.++
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~-----------------------~~~~~~~~v~~~~~~~~- 67 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLL-----------------------QSLRYKHPLLCCNFIDN- 67 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEE-----------------------EEEECSSCEEEEEEEES-
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccce-----------------------eeeecCCceEEEEECCC-
Confidence 345688999999999999999999888765432 00000 00112234578999985
Q ss_pred Cc-EE-EEeCCCceEEEEC-CCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 159 GD-LY-IADAYYGLLVVGS-KGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 159 G~-L~-VaD~~~Gl~~v~~-~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
|+ ++ ++.....|..++. ++++...+... ..-...+.+++.+ ++.+++-
T Consensus 68 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~---~~~~~v~~l~~~~-~~~l~s~ 118 (342)
T 1yfq_A 68 TDLQIYVGTVQGEILKVDLIGSPSFQALTNN---EANLGICRICKYG-DDKLIAA 118 (342)
T ss_dssp SSEEEEEEETTSCEEEECSSSSSSEEECBSC---CCCSCEEEEEEET-TTEEEEE
T ss_pred CCcEEEEEcCCCeEEEEEeccCCceEecccc---CCCCceEEEEeCC-CCEEEEE
Confidence 77 44 4444444777788 87765444320 0112467788887 6655543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.72 Score=45.08 Aligned_cols=123 Identities=14% Similarity=0.142 Sum_probs=68.0
Q ss_pred CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCC-cceEEEeCCCCcEEEEeCCCc
Q 039124 91 GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGR-PLGLRFNKDTGDLYIADAYYG 169 (259)
Q Consensus 91 G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gr-PlGl~~d~~~G~L~VaD~~~G 169 (259)
++.+|+...++.|+.++...+. +.+........+ ......|.. ..|++++ ++.+|+......
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~-~~W~~~~~~~~~--------------~~~~~~~~~~~~~~~~~--~g~v~v~~~dg~ 132 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGR-LIWKYDPQSDRH--------------RAGEACCDAVNRGVAVW--KGKVYVGVLDGR 132 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCC-EEEEECCCCCGG--------------GGGGCTTCSCCCCCEEE--TTEEEEECTTSE
T ss_pred CCEEEEEcCCCeEEEEECCCCc-eeEEEcCCCCcc--------------ccccccccCCCCccEEE--CCEEEEEccCCE
Confidence 4558888889999999986542 223221100000 000111221 1356666 378999876666
Q ss_pred eEEEECCCCeEEEeeecCC-CC-C-ccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEE
Q 039124 170 LLVVGSKGGLATPLATQAG-GK-P-ILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNS 244 (259)
Q Consensus 170 l~~v~~~gg~~~~l~~~~~-g~-p-l~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~ 244 (259)
|+.+|.++|+.. +..... +. . ......-.+ .+|.||++.+...+ ...|+|+.||++||+..
T Consensus 133 l~AlDa~TG~~~-W~~~~~~~~~~~~~~~~sP~v-~~g~v~vg~~~~~~------------~~~g~v~a~D~~tG~~~ 196 (689)
T 1yiq_A 133 LEAIDAKTGQRA-WSVDTRADHKRSYTITGAPRV-VNGKVVIGNGGAEF------------GVRGYVTAYDAETGKEA 196 (689)
T ss_dssp EEEEETTTCCEE-EEEECCSCTTSCCBCCSCCEE-ETTEEEECCBCTTT------------CCBCEEEEEETTTCCEE
T ss_pred EEEEECCCCCEe-eeecCcCCCCCCccccCCcEE-ECCEEEEEeCCCcc------------CCCCEEEEEECCCCcEE
Confidence 999999988633 322221 10 0 111111222 27789997665321 24678999999888764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.96 Score=45.86 Aligned_cols=102 Identities=7% Similarity=-0.054 Sum_probs=67.1
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
-....+++|.++|+.++++..++.|+.|+..+...... . ....+....++|.++
T Consensus 378 ~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~-----------~--------------~~~~~~v~~~~~SpD- 431 (1045)
T 1k32_A 378 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI-----------E--------------RSREAMITDFTISDN- 431 (1045)
T ss_dssp CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-----------E--------------ECSSSCCCCEEECTT-
T ss_pred ccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEe-----------c--------------cCCCCCccceEECCC-
Confidence 34567899999999888888899999999876532211 0 011223468899995
Q ss_pred CcEEE-EeCC----------CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecC
Q 039124 159 GDLYI-ADAY----------YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDT 211 (259)
Q Consensus 159 G~L~V-aD~~----------~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDs 211 (259)
|+.++ +... ..|+.+|.++++...+... ......+++++||+ |||+..
T Consensus 432 G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~-----~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 432 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE-----NSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCS-----SSBEEEEEECTTSCEEEEEES
T ss_pred CCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCC-----CcccCCceEcCCCCEEEEEec
Confidence 77544 3221 2488889998865444321 22456789999998 777554
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.32 E-value=2.5 Score=40.42 Aligned_cols=105 Identities=11% Similarity=0.075 Sum_probs=63.0
Q ss_pred EEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceE
Q 039124 73 LEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGL 152 (259)
Q Consensus 73 ~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl 152 (259)
..+.+.-..-.+++|.++|+.+.++..||.|..|+........ . .....+.-..+
T Consensus 424 ~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~-~------------------------~~~h~~~v~~~ 478 (694)
T 3dm0_A 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR-R------------------------FVGHTKDVLSV 478 (694)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-E------------------------EECCSSCEEEE
T ss_pred ceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCccee-E------------------------EeCCCCCEEEE
Confidence 3445555566789999999999999999999999986552111 0 01112335688
Q ss_pred EEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCC
Q 039124 153 RFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNG 204 (259)
Q Consensus 153 ~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG 204 (259)
+|.++ |+.+++-+..| |...|..+.....+.....+. -...+.+++.+++
T Consensus 479 ~~s~~-~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 479 AFSLD-NRQIVSASRDRTIKLWNTLGECKYTISEGGEGH-RDWVSCVRFSPNT 529 (694)
T ss_dssp EECTT-SSCEEEEETTSCEEEECTTSCEEEEECSSTTSC-SSCEEEEEECSCS
T ss_pred EEeCC-CCEEEEEeCCCEEEEEECCCCcceeeccCCCCC-CCcEEEEEEeCCC
Confidence 99985 66655544444 555576655333332222221 2245666666665
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.28 E-value=0.74 Score=44.39 Aligned_cols=100 Identities=9% Similarity=-0.079 Sum_probs=60.4
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
..-.+++|.++|+.+.++..+|.|..|+........ . .....+....++|.++ |
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~-~------------------------~~~~~~~v~~~~~s~~-~ 109 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV-D------------------------FEAHPDYIRSIAVHPT-K 109 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE-E------------------------EECCSSCEEEEEECSS-S
T ss_pred CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-E------------------------EecCCCCEEEEEEeCC-C
Confidence 445789999999999999999999999976542211 0 0112234568999985 7
Q ss_pred cEEE-EeCCCceEEEECCCC-eEEEeeecCCCCCccccccEEEcC-CCcEEEe
Q 039124 160 DLYI-ADAYYGLLVVGSKGG-LATPLATQAGGKPILFANDLDVHK-NGSIFFT 209 (259)
Q Consensus 160 ~L~V-aD~~~Gl~~v~~~gg-~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfT 209 (259)
..++ +.....+...+.+++ .......... .....+++.+ +|+.+++
T Consensus 110 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~l~~ 158 (814)
T 3mkq_A 110 PYVLSGSDDLTVKLWNWENNWALEQTFEGHE----HFVMCVAFNPKDPSTFAS 158 (814)
T ss_dssp SEEEEEETTSEEEEEEGGGTSEEEEEEECCS----SCEEEEEEETTEEEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCceEEEEEcCCC----CcEEEEEEEcCCCCEEEE
Confidence 6554 444334666676655 2222222111 2356677777 5654444
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.48 Score=41.08 Aligned_cols=77 Identities=16% Similarity=0.015 Sum_probs=45.9
Q ss_pred ceeEEEcCCCCEE-EEEcCC--CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc-eEEEeCC
Q 039124 82 PESLEFDGLGRGP-YTGLAD--GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL-GLRFNKD 157 (259)
Q Consensus 82 PE~ia~D~~G~~~-yt~~~~--G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl-Gl~~d~~ 157 (259)
..+++|.++|+.+ |+...+ ..|+.++.++..... +. ....... ++++.++
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-----------l~---------------~~~~~~~~~~~~spd 91 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-----------LT---------------EGKGDNTFGGFISTD 91 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-----------CC---------------CSSCBCTTTCEECTT
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-----------ee---------------cCCCCccccceECCC
Confidence 5567899999864 554433 468888877652211 00 0011222 3678885
Q ss_pred CCc-EEEEeCCCceEEEECCCCeEEEeee
Q 039124 158 TGD-LYIADAYYGLLVVGSKGGLATPLAT 185 (259)
Q Consensus 158 ~G~-L~VaD~~~Gl~~v~~~gg~~~~l~~ 185 (259)
|+ |+.+.....|+.++.++++.+.+..
T Consensus 92 -g~~l~~~~~~~~l~~~d~~~~~~~~~~~ 119 (396)
T 3c5m_A 92 -ERAFFYVKNELNLMKVDLETLEEQVIYT 119 (396)
T ss_dssp -SSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred -CCEEEEEEcCCcEEEEECCCCCcEEEEe
Confidence 65 4445444569999999887666654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.52 Score=42.39 Aligned_cols=99 Identities=11% Similarity=0.030 Sum_probs=61.2
Q ss_pred ceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 82 PESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 82 PE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
=.+++|.+ +++.++++..||.|..|+..+.....+.. . ......-..++|+++ |.
T Consensus 167 V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---------~--------------~~~~~~~~~~~~~~~-~~ 222 (435)
T 4e54_B 167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFAS---------S--------------DTINIWFCSLDVSAS-SR 222 (435)
T ss_dssp CCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEEC---------C--------------SSCSCCCCCEEEETT-TT
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEec---------c--------------CCCCccEEEEEECCC-CC
Confidence 35789987 68889999999999999987653222110 0 011122357889984 77
Q ss_pred EEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEe
Q 039124 161 LYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFT 209 (259)
Q Consensus 161 L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfT 209 (259)
++++-...| |...|.++.....+ .+. -...+.+++.++|. +++|
T Consensus 223 ~l~~g~~dg~i~~wd~~~~~~~~~----~~h-~~~v~~v~~~p~~~~~~~s 268 (435)
T 4e54_B 223 MVVTGDNVGNVILLNMDGKELWNL----RMH-KKKVTHVALNPCCDWFLAT 268 (435)
T ss_dssp EEEEECSSSBEEEEESSSCBCCCS----BCC-SSCEEEEEECTTCSSEEEE
T ss_pred EEEEEeCCCcEeeeccCcceeEEE----ecc-cceEEeeeecCCCceEEEE
Confidence 776654455 66678776543222 111 12467788888775 4444
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=2.6 Score=42.96 Aligned_cols=101 Identities=12% Similarity=-0.064 Sum_probs=63.2
Q ss_pred EEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceE
Q 039124 73 LEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGL 152 (259)
Q Consensus 73 ~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl 152 (259)
..+.+.-..-.+++|.++|+.+.++..+|.|..|+........ ......+....+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~-------------------------~~~~h~~~v~~~ 663 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL-------------------------DIKAHEDEVLCC 663 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-------------------------EECCCSSCEEEE
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE-------------------------EeccCCCCEEEE
Confidence 3444555566789999999999999999999999986652111 011123445789
Q ss_pred EEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCC
Q 039124 153 RFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKN 203 (259)
Q Consensus 153 ~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~d 203 (259)
+|.++ |+++++-...| |...|..+++........ -...+.+++.++
T Consensus 664 ~~s~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~ 710 (1249)
T 3sfz_A 664 AFSSD-DSYIATCSADKKVKIWDSATGKLVHTYDEH----SEQVNCCHFTNK 710 (1249)
T ss_dssp EECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECC----SSCEEEEEECSS
T ss_pred EEecC-CCEEEEEeCCCeEEEEECCCCceEEEEcCC----CCcEEEEEEecC
Confidence 99995 77766544444 666788877533222211 123556666663
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.66 Score=44.31 Aligned_cols=123 Identities=14% Similarity=0.098 Sum_probs=66.7
Q ss_pred CCEEEEEcC-CCeEEEEeC-CCccEEEEEEeecCccccccccCccccccccccccCcCC-CcceEEEeCCCCcEEEEeCC
Q 039124 91 GRGPYTGLA-DGRIVRWMG-ENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCG-RPLGLRFNKDTGDLYIADAY 167 (259)
Q Consensus 91 G~~~yt~~~-~G~I~ri~~-~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g-rPlGl~~d~~~G~L~VaD~~ 167 (259)
+..+|+... ++.|+.++. ..+. ..+......... .....-|. ...+++++ ++.+||....
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~-~~W~~~~~~~~~--------------~~~~~~~~~~~~~~~~~--~~~v~v~~~d 124 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGK-IVWQHKPKQDAS--------------TKAVMCCDVVDRGLAYG--AGQIVKKQAN 124 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTS-EEEEECCCCCGG--------------GGGGCTTCSCCCCCEEE--TTEEEEECTT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCcc-EEEEEcCCCCcc--------------ccccccccccccccEEE--CCEEEEEeCC
Confidence 345888877 899999998 5442 222221100000 00000111 11256666 3799998766
Q ss_pred CceEEEECCCCeEEEeeecCCCCCc--cccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEE
Q 039124 168 YGLLVVGSKGGLATPLATQAGGKPI--LFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNS 244 (259)
Q Consensus 168 ~Gl~~v~~~gg~~~~l~~~~~g~pl--~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~ 244 (259)
..|+.+|.++|+.. +.....+.+. .......+. +|.||++..... ....|+|+.||++||+..
T Consensus 125 g~l~alD~~tG~~~-W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~------------~~~~g~v~a~D~~tG~~~ 189 (571)
T 2ad6_A 125 GHLLALDAKTGKIN-WEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAE------------LGVRGAVNAFDLKTGELK 189 (571)
T ss_dssp SEEEEEETTTCCEE-EEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGG------------GTCCCEEEEEETTTCCEE
T ss_pred CEEEEEECCCCCEE-EEecCCCCCccceeccCCEEE-CCEEEEEecCCc------------cCCCCEEEEEECCCCcEE
Confidence 66999999888633 3222222110 111122233 678999875432 123578999999888764
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=94.17 E-value=2.4 Score=36.21 Aligned_cols=106 Identities=13% Similarity=0.013 Sum_probs=62.4
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.+.-..-.+++|++++..++++..||.|..|+..+.....+. ...+.-..+++.
T Consensus 104 ~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~--------------------------~h~~~v~~~~~~ 157 (319)
T 3frx_A 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL--------------------------GHNDWVSQVRVV 157 (319)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEEC--------------------------CCSSCEEEEEEC
T ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEe--------------------------ccCCcEEEEEEc
Confidence 344445668899999999999999999999998765222110 001122345554
Q ss_pred CC-----CCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 156 KD-----TGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 156 ~~-----~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
+. ++.++++-...| |...|..+++...-. .+. -...+.+++.++|+..+|-+
T Consensus 158 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~h-~~~v~~~~~sp~g~~l~s~~ 215 (319)
T 3frx_A 158 PNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF---IGH-NSNINTLTASPDGTLIASAG 215 (319)
T ss_dssp CC------CCEEEEEETTSCEEEEETTTTEEEEEE---CCC-CSCEEEEEECTTSSEEEEEE
T ss_pred cCCCCCCCccEEEEEeCCCEEEEEECCcchhheee---cCC-CCcEEEEEEcCCCCEEEEEe
Confidence 41 133444434444 666687766432221 121 23578899999998777644
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=94.16 E-value=2.6 Score=37.70 Aligned_cols=112 Identities=11% Similarity=0.001 Sum_probs=67.3
Q ss_pred CCCCCceeEEEcCCCC-EEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 77 DEVFGPESLEFDGLGR-GPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 77 ~~l~gPE~ia~D~~G~-~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
+.-....+++|++++. .++++..+|.|..|+....... . . ... . . .......+....+++.
T Consensus 179 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-------~--~-~~~-~-----~--~~~~~h~~~v~~v~~~ 240 (430)
T 2xyi_A 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE-------H--R-VID-A-----K--NIFTGHTAVVEDVAWH 240 (430)
T ss_dssp CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBG-------G--G-EEE-C-----S--EEECCCSSCEEEEEEC
T ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCC-------C--c-eec-c-----c--eeecCCCCCEeeeEEe
Confidence 3344567899999887 8999999999999987652100 0 0 000 0 0 0111223446789999
Q ss_pred CCCCcEEEEeCCCc-eEEEECCCCe----EEEeeecCCCCCccccccEEEcCCCc-EEEecC
Q 039124 156 KDTGDLYIADAYYG-LLVVGSKGGL----ATPLATQAGGKPILFANDLDVHKNGS-IFFTDT 211 (259)
Q Consensus 156 ~~~G~L~VaD~~~G-l~~v~~~gg~----~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDs 211 (259)
++++.++++....| |...|..++. ...+. . . -..++.+++.++|. +++|-+
T Consensus 241 p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~-~---~~~v~~i~~~p~~~~~l~tg~ 297 (430)
T 2xyi_A 241 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-A-H---TAEVNCLSFNPYSEFILATGS 297 (430)
T ss_dssp SSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-C-C---SSCEEEEEECSSCTTEEEEEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-c-C---CCCeEEEEeCCCCCCEEEEEe
Confidence 85477877666555 6666876542 22221 1 1 12478899999886 666543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.14 E-value=2.4 Score=36.04 Aligned_cols=109 Identities=8% Similarity=0.029 Sum_probs=62.3
Q ss_pred CCCCceeEEEcCC--CCEEEEEcCCCeEEEEeCCCcc-EEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 78 EVFGPESLEFDGL--GRGPYTGLADGRIVRWMGENVG-WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 78 ~l~gPE~ia~D~~--G~~~yt~~~~G~I~ri~~~~~~-~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
.-....+++|.++ ++.++++..+|.|..|+..... ...+. ..........+++
T Consensus 100 ~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------------------------~~~~~~~v~~~~~ 155 (379)
T 3jrp_A 100 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII------------------------IDAHAIGVNSASW 155 (379)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE------------------------EECCTTCEEEEEE
T ss_pred CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE------------------------ecCCCCceEEEEE
Confidence 3456778999998 8999999999999999876541 11110 0111223356777
Q ss_pred eCC------------CCcEEEEeCCCc-eEEEECCCCe-EEEeeecCCCCCccccccEEEcCC---CcEEEecC
Q 039124 155 NKD------------TGDLYIADAYYG-LLVVGSKGGL-ATPLATQAGGKPILFANDLDVHKN---GSIFFTDT 211 (259)
Q Consensus 155 d~~------------~G~L~VaD~~~G-l~~v~~~gg~-~~~l~~~~~g~pl~~~Ndl~vd~d---G~IyfTDs 211 (259)
.+. ++.++++-...| |...|..++. ...+.....+. -...+.+++.++ |++.++-+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 156 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEE
T ss_pred cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc-cCcEeEEEECCCCCCCCeEEEEe
Confidence 762 266665544444 5555654332 12222222221 134678888888 67655543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.10 E-value=2.4 Score=36.39 Aligned_cols=98 Identities=15% Similarity=0.111 Sum_probs=56.0
Q ss_pred EEccCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEE-EEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 73 LEFVDEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWE-TFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 73 ~l~~~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~-~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
.++.+.-..-.+++|.+ +|+.++++..+|.|..|+.+..... .+... ..+.-+. .......+...
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~------~~~~~~~-------~~~~~~~~~v~ 103 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK------AVCSIGR-------DHPDVHRYSVE 103 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC------EEEEECT-------TCTTCCSSCEE
T ss_pred eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc------ccccccc-------cccccCCCcEE
Confidence 34444445667899999 9999999999999999987654210 00000 0000000 00011234456
Q ss_pred eEEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEe
Q 039124 151 GLRFNKDTGDLYIADAYYG-LLVVGSKGGLATPL 183 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l 183 (259)
.++|.+++++++++-...| |...+.++++....
T Consensus 104 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 137 (408)
T 4a11_B 104 TVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADV 137 (408)
T ss_dssp EEEECTTCTTCEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEEEccCCCcEEEEEeCCCeEEEeeCCCCcccee
Confidence 8999884455555544444 66678887754433
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.94 E-value=1.3 Score=44.52 Aligned_cols=117 Identities=12% Similarity=0.015 Sum_probs=69.7
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
.-.+++|+++|+.++++..+|.|..|+.++.....+... +... . ........+....++|++++++
T Consensus 100 ~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~--~~~~-~-----------~~~~~~h~~~V~sl~~sp~~~~ 165 (902)
T 2oaj_A 100 KITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLD--NLQK-S-----------SFFPAARLSPIVSIQWNPRDIG 165 (902)
T ss_dssp CEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEEC--CHHH-H-----------HTCSSSCCCCCCEEEEETTEEE
T ss_pred CEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceec--cccc-c-----------ccccccCCCCeEEEEEccCCCC
Confidence 346889999999999999999999999876533222211 0000 0 0000122345678999985345
Q ss_pred EEEEeCCCceEEEECCCCeEEEeee-c-CCCCC------------ccccccEEEcCCCcEEEecC
Q 039124 161 LYIADAYYGLLVVGSKGGLATPLAT-Q-AGGKP------------ILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 161 L~VaD~~~Gl~~v~~~gg~~~~l~~-~-~~g~p------------l~~~Ndl~vd~dG~IyfTDs 211 (259)
++++-...|.+..|.++++...... . ..|.+ -...+.+++.+||+..+|-+
T Consensus 166 ~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs 230 (902)
T 2oaj_A 166 TVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH 230 (902)
T ss_dssp EEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE
T ss_pred EEEEEeCCCcEEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE
Confidence 5555455564477888775322221 1 00111 13578999999998777654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.92 E-value=1.5 Score=38.67 Aligned_cols=134 Identities=11% Similarity=0.014 Sum_probs=72.9
Q ss_pred CCCceeEEEcCCC-CEEEEEcCCCeEEEEeCCCccE-----EEEEEeecCccccccccCccccccccccccCcCCCcceE
Q 039124 79 VFGPESLEFDGLG-RGPYTGLADGRIVRWMGENVGW-----ETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGL 152 (259)
Q Consensus 79 l~gPE~ia~D~~G-~~~yt~~~~G~I~ri~~~~~~~-----~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl 152 (259)
-....+++|+++| +.++++..+|.|..|+...... ..+... . .+.. ........+.-..+
T Consensus 226 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~--~~~~----------~~~~~~~~~~v~~~ 291 (447)
T 3dw8_B 226 TEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEP--E--DPSN----------RSFFSEIISSISDV 291 (447)
T ss_dssp CCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-------------------CCHHHHHTTCEEEE
T ss_pred CcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccC--C--Cccc----------cccccccCceEEEE
Confidence 3456789999998 8899999999999998765421 111000 0 0000 00000111245689
Q ss_pred EEeCCCCcEEEEeCCCceEEEECCC-Ce-EEEeeecCCC-----------CCccccccEEEcCCCcEEEecCCCCCCccc
Q 039124 153 RFNKDTGDLYIADAYYGLLVVGSKG-GL-ATPLATQAGG-----------KPILFANDLDVHKNGSIFFTDTSKRYNRVD 219 (259)
Q Consensus 153 ~~d~~~G~L~VaD~~~Gl~~v~~~g-g~-~~~l~~~~~g-----------~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~ 219 (259)
+|.++ |.++++-....|...|... ++ ...+.. ... ..+.-...++++++|...+|-+.
T Consensus 292 ~~s~~-g~~l~~~~~~~v~iwd~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~------- 362 (447)
T 3dw8_B 292 KFSHS-GRYMMTRDYLSVKVWDLNMENRPVETYQV-HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY------- 362 (447)
T ss_dssp EECTT-SSEEEEEESSEEEEEETTCCSSCSCCEES-CGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS-------
T ss_pred EECCC-CCEEEEeeCCeEEEEeCCCCccccceeec-cccccccccccccccccccceEEEECCCCCEEEEecc-------
Confidence 99994 8877765553355567764 32 111111 000 00000223899999986666442
Q ss_pred ceeeeeccCCCceEEEEeCCCCcEEE
Q 039124 220 HFFILLEGESTGRLLRYDPPTKSNSY 245 (259)
Q Consensus 220 ~~~~~~e~~~~GrL~rydp~tg~~~v 245 (259)
.|.|..||..+++...
T Consensus 363 ----------dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 363 ----------NNFFRMFDRNTKRDIT 378 (447)
T ss_dssp ----------TTEEEEEETTTCCEEE
T ss_pred ----------CCEEEEEEcCCCccee
Confidence 3567777776665543
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=93.84 E-value=1.5 Score=37.10 Aligned_cols=99 Identities=10% Similarity=-0.058 Sum_probs=60.7
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcE
Q 039124 82 PESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDL 161 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L 161 (259)
-.+++|.++++.++++..||.|..|+........ . .....+.-..++|.++ +.+
T Consensus 58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~-~------------------------~~~h~~~v~~~~~~~~-~~~ 111 (304)
T 2ynn_A 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV-D------------------------FEAHPDYIRSIAVHPT-KPY 111 (304)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE-E------------------------EECCSSCEEEEEECSS-SSE
T ss_pred EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEE-E------------------------EeCCCCcEEEEEEcCC-CCE
Confidence 3578888999999999999999999986542111 0 0111233468999995 777
Q ss_pred EEEeCCCc-eEEEECCCCe-EEEeeecCCCCCccccccEEEcC-CCcEEEec
Q 039124 162 YIADAYYG-LLVVGSKGGL-ATPLATQAGGKPILFANDLDVHK-NGSIFFTD 210 (259)
Q Consensus 162 ~VaD~~~G-l~~v~~~gg~-~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTD 210 (259)
+++-...| |...|.+++. ..... .+. -...+.+++.| ++.+.+|-
T Consensus 112 l~sgs~D~~v~lWd~~~~~~~~~~~---~~h-~~~v~~v~~~p~~~~~l~sg 159 (304)
T 2ynn_A 112 VLSGSDDLTVKLWNWENNWALEQTF---EGH-EHFVMCVAFNPKDPSTFASG 159 (304)
T ss_dssp EEEEETTSCEEEEEGGGTTEEEEEE---CCC-CSCEEEEEECTTCTTEEEEE
T ss_pred EEEECCCCeEEEEECCCCcchhhhh---ccc-CCcEEEEEECCCCCCEEEEE
Confidence 66555555 5556776552 22221 221 12467788877 45655553
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.82 E-value=3.1 Score=36.49 Aligned_cols=116 Identities=14% Similarity=0.159 Sum_probs=67.7
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.+.-..-.+++|.++|+.+.++ .||.|..|+..... ..+....... .......+....++|+
T Consensus 174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~-~~~~~~~~~~----------------~~~~~~~~~v~~~~~~ 235 (447)
T 3dw8_B 174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITD-RSFNIVDIKP----------------ANMEELTEVITAAEFH 235 (447)
T ss_dssp SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEE-EEEEEEECCC----------------SSGGGCCCCEEEEEEC
T ss_pred cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCC-ceeeeeeccc----------------ccccccCcceEEEEEC
Confidence 3444556789999999988888 89999999987321 1111100000 0111223456789999
Q ss_pred CCCC-cEEEEeCCCc-eEEEECCCCeE-----EEeeecCCCCC-------ccccccEEEcCCCcEEEec
Q 039124 156 KDTG-DLYIADAYYG-LLVVGSKGGLA-----TPLATQAGGKP-------ILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 156 ~~~G-~L~VaD~~~G-l~~v~~~gg~~-----~~l~~~~~g~p-------l~~~Ndl~vd~dG~IyfTD 210 (259)
++ | +++++-...| |...|..++.. ..+....+... ....+.++++++|++.++-
T Consensus 236 p~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 303 (447)
T 3dw8_B 236 PN-SCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTR 303 (447)
T ss_dssp SS-CTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEE
T ss_pred CC-CCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEe
Confidence 95 6 7766555555 66678776652 32221111000 0157889999999866653
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.68 E-value=2.9 Score=36.21 Aligned_cols=105 Identities=10% Similarity=0.033 Sum_probs=64.8
Q ss_pred CCceeEEEcCCC-CEEEEEcCCC---eEEEEeCCCccEEEEEEeecCccccccccCcccccccccccc-CcCCCcceEEE
Q 039124 80 FGPESLEFDGLG-RGPYTGLADG---RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHE-KWCGRPLGLRF 154 (259)
Q Consensus 80 ~gPE~ia~D~~G-~~~yt~~~~G---~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~grPlGl~~ 154 (259)
....+++|.++| .+++++..+| .|..|+..... . .. .... ...+....++|
T Consensus 215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~------------~-~~-----------~~~~~~~~~~v~~~~~ 270 (416)
T 2pm9_A 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN------------T-PL-----------QTLNQGHQKGILSLDW 270 (416)
T ss_dssp CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT------------S-CS-----------BCCCSCCSSCEEEEEE
T ss_pred CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC------------C-Cc-----------EEeecCccCceeEEEe
Confidence 456789999987 5788888888 88888876431 0 00 0111 12344678999
Q ss_pred eCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCC-cEEEecCC
Q 039124 155 NKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNG-SIFFTDTS 212 (259)
Q Consensus 155 d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG-~IyfTDss 212 (259)
.+.+++++++-...| |...|.++++........ -...+++++.++| .++++-+.
T Consensus 271 s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~~l~s~~~ 326 (416)
T 2pm9_A 271 CHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR----GNWCFKTKFAPEAPDLFACASF 326 (416)
T ss_dssp CSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS----SSCCCCEEECTTCTTEEEECCS
T ss_pred CCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC----CCceEEEEECCCCCCEEEEEec
Confidence 873366666544445 666687776432222211 1357899999998 67777543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=93.53 E-value=4.4 Score=37.08 Aligned_cols=109 Identities=13% Similarity=0.056 Sum_probs=65.1
Q ss_pred CCCCCceeEEEcCCCC-EEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCC---CcceE
Q 039124 77 DEVFGPESLEFDGLGR-GPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCG---RPLGL 152 (259)
Q Consensus 77 ~~l~gPE~ia~D~~G~-~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g---rPlGl 152 (259)
+.-..-.+++|.+++. .++++..+|.|..|+........ . .....+ ....+
T Consensus 158 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~-~------------------------~~~~~~~~~~v~~~ 212 (615)
T 1pgu_A 158 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA-S------------------------DRTHHKQGSFVRDV 212 (615)
T ss_dssp SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE-E------------------------ECSSSCTTCCEEEE
T ss_pred cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceee-e------------------------ecccCCCCceEEEE
Confidence 3344567899999887 78999999999999976542111 0 011112 35689
Q ss_pred EEeCCCCcEEEE-eCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 153 RFNKDTGDLYIA-DAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 153 ~~d~~~G~L~Va-D~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
+|.+++|+++++ .....|...|..+++............-...+.+++. +|+.+++-+
T Consensus 213 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~ 271 (615)
T 1pgu_A 213 EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVG 271 (615)
T ss_dssp EECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEE
T ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEc
Confidence 999842666554 4444477778877653322211000112346788888 887666543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.50 E-value=1.9 Score=37.04 Aligned_cols=108 Identities=14% Similarity=0.091 Sum_probs=60.1
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
....+++|.++|+.++++..+|.|..|+........ .. . ...+. ............+. .+
T Consensus 246 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~----~-~~~~~-------------~~~~~~~~~~~~~~-~~ 305 (408)
T 4a11_B 246 GKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTL-VN----Y-GKVCN-------------NSKKGLKFTVSCGC-SS 305 (408)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCC-CC----C-CCCCC-------------CCSSCCCCEECCSS-SS
T ss_pred CceeEEEEcCCCCEEEEecCCCeEEEEECCCCccce-ec----c-ccccc-------------cccccceeEEecCC-Cc
Confidence 456789999999999999999999999986542110 00 0 00000 01111111222222 24
Q ss_pred cEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 160 DLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 160 ~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
.++++.....|..+|..+++..... .+. -...+.+++.++|.+.+|-+
T Consensus 306 ~~~~~~~~~~i~v~d~~~~~~~~~~---~~~-~~~v~~~~~s~~~~~l~s~~ 353 (408)
T 4a11_B 306 EFVFVPYGSTIAVYTVYSGEQITML---KGH-YKTVDCCVFQSNFQELYSGS 353 (408)
T ss_dssp CEEEEEETTEEEEEETTTCCEEEEE---CCC-SSCEEEEEEETTTTEEEEEE
T ss_pred eEEEEecCCEEEEEECcCCcceeee---ccC-CCeEEEEEEcCCCCEEEEEC
Confidence 5554544445777787766432222 221 23567899999998777644
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=93.49 E-value=0.72 Score=44.83 Aligned_cols=98 Identities=10% Similarity=0.048 Sum_probs=58.8
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEE
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYI 163 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~V 163 (259)
+++|.++|..+|++ +|.|+.|+..++....+ +... ...........+.+.++ |+.++
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~-~~~~-------------------~~~~~~~~~~~~~~Spd-g~~l~ 77 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF-LENS-------------------TFDEFGHSINDYSISPD-GQFIL 77 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCEEEE-ECTT-------------------TTTTCCSCCCEEEECTT-SSEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCceEEE-Eech-------------------hhhhhcccccceEECCC-CCEEE
Confidence 78999999877776 89999999876532221 1100 00111122345788995 76443
Q ss_pred EeCC----------CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEe
Q 039124 164 ADAY----------YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFT 209 (259)
Q Consensus 164 aD~~----------~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfT 209 (259)
.-.. ..++.+|.++++.+.+... . ......+++|||+ |.|+
T Consensus 78 ~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~-~----~~~~~~~~SPdG~~la~~ 129 (740)
T 4a5s_A 78 LEYNYVKQWRHSYTASYDIYDLNKRQLITEERI-P----NNTQWVTWSPVGHKLAYV 129 (740)
T ss_dssp EEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-C----TTEEEEEECSSTTCEEEE
T ss_pred EEECCeeeEEEccceEEEEEECCCCcEEEcccC-C----CcceeeEECCCCCEEEEE
Confidence 3221 1267889999876554321 1 1356788999997 6555
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.49 E-value=1.9 Score=42.13 Aligned_cols=110 Identities=14% Similarity=0.098 Sum_probs=63.6
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.+.-..-.+++|+++|+.++++..+|.|..|+..+....... ......+.-..++|.
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~-----------------------~l~~h~~~V~~l~~s 62 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLID-----------------------TLTGHEGPVWRVDWA 62 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEE-----------------------EECCCSSCEEEEEEC
T ss_pred ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccce-----------------------eccCCcCceEEEEec
Confidence 444455668899999998999999999998886533111110 011112334688887
Q ss_pred CC-CCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCC--CcEEEec
Q 039124 156 KD-TGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKN--GSIFFTD 210 (259)
Q Consensus 156 ~~-~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~d--G~IyfTD 210 (259)
++ +|+++++-+..| |...+.+++....+... .+ .-.....+++.++ |+++++-
T Consensus 63 ~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~-h~~~V~~v~~sp~~~~~~l~sg 119 (753)
T 3jro_A 63 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AV-HSASVNSVQWAPHEYGPLLLVA 119 (753)
T ss_dssp CTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE-CC-CSSCEEEEEECCGGGCSEEEEE
T ss_pred CCCCCCEEEEEeCCCeEEEEECCCCcccccccc-cC-CCCCeEEEEECCCCCCCEEEEE
Confidence 62 166666544555 55667777643333221 11 1234678888887 7655543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=93.42 E-value=1.9 Score=41.57 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=40.2
Q ss_pred cceEEEeCCCCcE-EEEeC-----CCceEEEECCC------C--eEEEeeecCCCCCccccccEEEcCCCc-EEEecCCC
Q 039124 149 PLGLRFNKDTGDL-YIADA-----YYGLLVVGSKG------G--LATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSK 213 (259)
Q Consensus 149 PlGl~~d~~~G~L-~VaD~-----~~Gl~~v~~~g------g--~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~ 213 (259)
..++++.++ |+. +++-. ...|+.++.++ + ..+.+....++. --.++++|. |||+...
T Consensus 235 ~~~~~~SpD-g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~------~~~~s~dg~~l~~~s~~- 306 (710)
T 2xdw_A 235 MGGAELSDD-GRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGE------YDYVTNEGTVFTFKTNR- 306 (710)
T ss_dssp EEEEEECTT-SCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC------EEEEEEETTEEEEEECT-
T ss_pred EEEEEEcCC-CCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcE------EEEEeccCCEEEEEECC-
Confidence 458889985 654 33321 23488888775 4 345554432221 123566665 6665321
Q ss_pred CCCcccceeeeeccCCCceEEEEeCCCCc
Q 039124 214 RYNRVDHFFILLEGESTGRLLRYDPPTKS 242 (259)
Q Consensus 214 ~~~~~~~~~~~~e~~~~GrL~rydp~tg~ 242 (259)
..+.++|+.+|.++++
T Consensus 307 -------------~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 307 -------------HSPNYRLINIDFTDPE 322 (710)
T ss_dssp -------------TCTTCEEEEEETTSCC
T ss_pred -------------CCCCCEEEEEeCCCCC
Confidence 1345677777776653
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.62 Score=44.65 Aligned_cols=99 Identities=9% Similarity=-0.018 Sum_probs=60.1
Q ss_pred ceeEEEcCCCCEEEEEcC---------CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceE
Q 039124 82 PESLEFDGLGRGPYTGLA---------DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGL 152 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~---------~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl 152 (259)
..+++|.++|+.+.++.. ++.|+.++.+++... . .....+....+
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~-------------~-------------~~~l~~~~~~~ 115 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFV-------------R-------------GNELPRPIQYL 115 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-------------C-------------SSCCCSSBCCE
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccc-------------c-------------ceecCcccccc
Confidence 568999999996655543 578888887765210 0 00111234578
Q ss_pred EEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCC----------------ccccccEEEcCCCc-EEEe
Q 039124 153 RFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKP----------------ILFANDLDVHKNGS-IFFT 209 (259)
Q Consensus 153 ~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~p----------------l~~~Ndl~vd~dG~-IyfT 209 (259)
+|.++ |+.++.-....|+.++.++++...+... |.. +.....++..|||+ |+++
T Consensus 116 ~~SPD-G~~la~~~~~~i~~~~~~~g~~~~l~~~--~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~ 186 (719)
T 1z68_A 116 CWSPV-GSKLAYVYQNNIYLKQRPGDPPFQITFN--GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYA 186 (719)
T ss_dssp EECSS-TTCEEEEETTEEEEESSTTSCCEECCCC--CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEE
T ss_pred eECCC-CCEEEEEECCeEEEEeCCCCCcEEEecC--CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEE
Confidence 89995 7654433345688888887766555421 211 12235899999998 5543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.36 E-value=1.8 Score=36.79 Aligned_cols=77 Identities=12% Similarity=0.165 Sum_probs=42.4
Q ss_pred cceEEEeCCCCcEEE-EeC---------CCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCc
Q 039124 149 PLGLRFNKDTGDLYI-ADA---------YYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNR 217 (259)
Q Consensus 149 PlGl~~d~~~G~L~V-aD~---------~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~ 217 (259)
...+++.++ | +++ +.. ...|+.++ +++.+.+... + . . ..+++||+ |+|+......
T Consensus 173 ~~~~~~spd-g-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~--~-~---~--~~~spdg~~l~~~~~~~~~-- 238 (347)
T 2gop_A 173 FSSGIWHRD-K-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK--V-S---F--YAVDSDGERILLYGKPEKK-- 238 (347)
T ss_dssp TCEEEEETT-E-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE--E-S---E--EEEEECSSCEEEEECCSSS--
T ss_pred cccccCCCC-e-EEEEEecccccccccccccEEEeC--CCceEEeccC--c-c---e--eeECCCCCEEEEEEccccC--
Confidence 457788884 7 554 322 22488888 6666666543 1 1 1 22378887 6665432211
Q ss_pred ccceeeeeccCCCceEEEEeCCCCcEEEecCC
Q 039124 218 VDHFFILLEGESTGRLLRYDPPTKSNSYCVRW 249 (259)
Q Consensus 218 ~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~~ 249 (259)
.....++|+.+| +++.+.+..+
T Consensus 239 --------~~~~~~~l~~~d--~~~~~~l~~~ 260 (347)
T 2gop_A 239 --------YMSEHNKLYIYD--GKEVMGILDE 260 (347)
T ss_dssp --------CCCSSCEEEEEC--SSCEEESSTT
T ss_pred --------CccccceEEEEC--CCceEecccc
Confidence 012345788888 5666665543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=93.24 E-value=4.1 Score=37.28 Aligned_cols=102 Identities=9% Similarity=0.010 Sum_probs=61.3
Q ss_pred CCceeEEEcCCCCEEEEEcC-CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLA-DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~-~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
..+.++++. ++.++++.. +|.|..|+..+..... . ......+....++|.++
T Consensus 447 ~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~---~---------------------~~~~~~~~v~~~~~s~~- 499 (615)
T 1pgu_A 447 SPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF---D---------------------LKTPLRAKPSYISISPS- 499 (615)
T ss_dssp SCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE---E---------------------CSSCCSSCEEEEEECTT-
T ss_pred CCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc---c---------------------ccCCccCceEEEEECCC-
Confidence 445666665 666777777 7888877776541110 0 01122345678999995
Q ss_pred CcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcC----------CCcEEEecC
Q 039124 159 GDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHK----------NGSIFFTDT 211 (259)
Q Consensus 159 G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~----------dG~IyfTDs 211 (259)
|+++++-...| |...+.++++. +. ...+..-...+.+++.+ +|++.++-+
T Consensus 500 g~~l~~~~~dg~i~iw~~~~~~~--~~-~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~ 560 (615)
T 1pgu_A 500 ETYIAAGDVMGKILLYDLQSREV--KT-SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS 560 (615)
T ss_dssp SSEEEEEETTSCEEEEETTTTEE--EE-CCSCCCSSCEEEEEECCCC------CCSCCEEEEEE
T ss_pred CCEEEEcCCCCeEEEeeCCCCcc--ee-EeecCCCCceeEEEEcCccccccccccCCCEEEEEc
Confidence 77766544444 77778887753 22 22221234578899999 888666543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=93.23 E-value=3.3 Score=34.81 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=59.2
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC-C
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD-T 158 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~-~ 158 (259)
..=.+++|+++|+.+.++..||.|..|+.++..... . .......+.-..++|.+. +
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~-----------~------------~~l~gH~~~V~~v~~s~~~~ 66 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKL-----------I------------DTLTGHEGPVWRVDWAHPKF 66 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCC-----------C------------EEECCCSSCEEEEEECCGGG
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEE-----------E------------EEEccccCCeEEEEecCCCc
Confidence 334588999999999999999999999875421000 0 001111233457888641 2
Q ss_pred CcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCC--CcEEEe
Q 039124 159 GDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKN--GSIFFT 209 (259)
Q Consensus 159 G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~d--G~IyfT 209 (259)
|+++++-+..| +...|.+++....+.. ..+. -...+.+++.++ |.+.++
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~-~~~h-~~~v~~v~~~p~~~g~~l~s 118 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWSQIAV-HAVH-SASVNSVQWAPHEYGPMLLV 118 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBCCCEE-ECCC-SSCEEEEEECCGGGCSEEEE
T ss_pred CCEEEEEcCCCEEEEEEcCCCceEEEEE-eecC-CCceeEEEeCcCCCCcEEEE
Confidence 67766545555 5555776653222211 1111 124677888776 655544
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=93.21 E-value=2.4 Score=35.63 Aligned_cols=105 Identities=7% Similarity=-0.014 Sum_probs=58.4
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCC-ccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC-C
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGEN-VGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK-D 157 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~-~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~-~ 157 (259)
....+++|.+++ ++++..+|.|..|+... ..... .. ...........+++.+ +
T Consensus 151 ~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~-~~----------------------~~~~~~~~i~~i~~~~~~ 205 (342)
T 1yfq_A 151 NKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNG-TI----------------------EESGLKYQIRDVALLPKE 205 (342)
T ss_dssp CCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCC-EE----------------------EECSCSSCEEEEEECSGG
T ss_pred CceEEEEecCCc--EEEEeCCCeEEEEECCccccccc-ee----------------------eecCCCCceeEEEECCCC
Confidence 456788998765 88999999999999765 31000 00 0011223456889987 6
Q ss_pred CCcEEEEeCCCceE-EEECCCC-------eEEEeeecCC---C-CCccccccEEEcCCCcEEEec
Q 039124 158 TGDLYIADAYYGLL-VVGSKGG-------LATPLATQAG---G-KPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 158 ~G~L~VaD~~~Gl~-~v~~~gg-------~~~~l~~~~~---g-~pl~~~Ndl~vd~dG~IyfTD 210 (259)
|+++++-...|.+ ..+.+.+ ....+..... + ......+.++++++|+..++-
T Consensus 206 -~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 269 (342)
T 1yfq_A 206 -QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA 269 (342)
T ss_dssp -GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEE
T ss_pred -CCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEe
Confidence 6666655555533 3343322 2222221100 0 012257889999998855543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=93.19 E-value=4.4 Score=36.04 Aligned_cols=102 Identities=13% Similarity=-0.089 Sum_probs=60.8
Q ss_pred CCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 77 DEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 77 ~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
+.-..-.+++++++|+.++++..+|.|..|+........ . .....+....+++++
T Consensus 308 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~-~------------------------~~~h~~~v~~~~~~~ 362 (464)
T 3v7d_B 308 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY-T------------------------LQGHTALVGLLRLSD 362 (464)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE-E------------------------ECCCSSCEEEEEECS
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE-E------------------------EeCCCCcEEEEEEcC
Confidence 334556689999999999999999999999986542111 0 011122345677763
Q ss_pred CCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 157 DTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 157 ~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
..|+.+.....|...|..++...... .. -.....+++.++|++.++-
T Consensus 363 --~~l~s~s~dg~v~vwd~~~~~~~~~~-~~----~~~~~~~~~~~~~~~l~~~ 409 (464)
T 3v7d_B 363 --KFLVSAAADGSIRGWDANDYSRKFSY-HH----TNLSAITTFYVSDNILVSG 409 (464)
T ss_dssp --SEEEEEETTSEEEEEETTTCCEEEEE-EC----TTCCCEEEEEECSSEEEEE
T ss_pred --CEEEEEeCCCcEEEEECCCCceeeee-cC----CCCccEEEEEeCCCEEEEe
Confidence 34444444444666688776432222 11 1235567777888766654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.13 E-value=3.5 Score=34.72 Aligned_cols=36 Identities=11% Similarity=-0.008 Sum_probs=29.6
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~ 111 (259)
.+.-..-.+++|.++|+.++++..+|.|..|+....
T Consensus 83 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 118 (368)
T 3mmy_A 83 QMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN 118 (368)
T ss_dssp EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC
Confidence 333455678999999999999999999999998765
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=93.03 E-value=1.1 Score=39.92 Aligned_cols=113 Identities=13% Similarity=0.071 Sum_probs=61.9
Q ss_pred CCceeEEEcC--CCCEEEEEcCCC----eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccC-----cCCC
Q 039124 80 FGPESLEFDG--LGRGPYTGLADG----RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEK-----WCGR 148 (259)
Q Consensus 80 ~gPE~ia~D~--~G~~~yt~~~~G----~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~gr 148 (259)
..-.+|++|+ .+. +|++...| .|++.+..+..|..+.... .. ..... ...+
T Consensus 55 ~~v~~i~~dp~~~~~-l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~----------~~-------~~~~~~~~~~~~~~ 116 (394)
T 3b7f_A 55 HTIHHIVQDPREPER-MLMAARTGHLGPTVFRSDDGGGNWTEATRPP----------AF-------NKAPEGETGRVVDH 116 (394)
T ss_dssp SEEEEEEECSSSTTC-EEEEEEC--CCEEEEEESSTTSCCEECSBCC----------CC-------CCCC----CCCCCE
T ss_pred CceEEEEECCCCCCe-EEEEecCCCCCccEEEeCCCCCCceECCccc----------cC-------CCcccccccccccc
Confidence 3457899998 455 88887777 7999876666565421000 00 00000 0112
Q ss_pred cceEEEeCC--CCcEEEEeCCCceEEEECCCCeEEEeeecC--C------------CCCccccccEEEcC--CCcEEEec
Q 039124 149 PLGLRFNKD--TGDLYIADAYYGLLVVGSKGGLATPLATQA--G------------GKPILFANDLDVHK--NGSIFFTD 210 (259)
Q Consensus 149 PlGl~~d~~--~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~--~------------g~pl~~~Ndl~vd~--dG~IyfTD 210 (259)
-..|++++. .+.||++-...||++-+..|..-+.+.... . +........|.+++ .++||+..
T Consensus 117 i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~ 196 (394)
T 3b7f_A 117 VFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGM 196 (394)
T ss_dssp EEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEE
T ss_pred eeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEE
Confidence 336788852 478998766678888865554434432110 0 11112345788886 35688764
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=93.00 E-value=2.2 Score=38.02 Aligned_cols=115 Identities=15% Similarity=0.149 Sum_probs=61.0
Q ss_pred eEEEcC-C-CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccc-----cCcCCCcceEEEeC
Q 039124 84 SLEFDG-L-GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKH-----EKWCGRPLGLRFNK 156 (259)
Q Consensus 84 ~ia~D~-~-G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~grPlGl~~d~ 156 (259)
++++|+ + .+.+|++...+.|+|.+..+..|+.+... .+.+. ...|.. ......-..|.+++
T Consensus 119 ~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~--------~~~p~----~~~~~~~~~~g~~~~~~i~~i~~d~ 186 (394)
T 3b7f_A 119 WLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGF--------NDHPM----RRAWTGGEQDGTPDGPKMHSILVDP 186 (394)
T ss_dssp EEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHH--------HTCTT----HHHHHCCC----CCCCEEEEEEECT
T ss_pred EEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCc--------cCCcc----ccccccccccCCCCCCceeEEEECC
Confidence 578886 2 45589888888999998777666642100 00000 000000 00011124788886
Q ss_pred C-CCcEEEEeCCCceEEEECCCCeEEEeeecCCCC--C------ccccccEEEcCC--CcEEEec
Q 039124 157 D-TGDLYIADAYYGLLVVGSKGGLATPLATQAGGK--P------ILFANDLDVHKN--GSIFFTD 210 (259)
Q Consensus 157 ~-~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~--p------l~~~Ndl~vd~d--G~IyfTD 210 (259)
. .+.|||+....||++-+..|...+.+....... | -.....|+++++ +.||++.
T Consensus 187 ~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~ 251 (394)
T 3b7f_A 187 RDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN 251 (394)
T ss_dssp TCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE
T ss_pred CCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc
Confidence 2 368999876667887765554434332211110 1 023567788876 6677764
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=92.95 E-value=1.4 Score=42.57 Aligned_cols=125 Identities=10% Similarity=0.033 Sum_probs=66.3
Q ss_pred CCEEEEEcC-CCeEEEEeC-CCccEEEEEEeecCccccccccCccccccccccccCcCCC-cceEEEeCCCCc----EEE
Q 039124 91 GRGPYTGLA-DGRIVRWMG-ENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGR-PLGLRFNKDTGD----LYI 163 (259)
Q Consensus 91 G~~~yt~~~-~G~I~ri~~-~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gr-PlGl~~d~~~G~----L~V 163 (259)
+..+|+... ++.|+.++. ..+. ..+......... ......|+. ..|+++.+.+|. +|+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~-~lW~~~~~~~~~--------------~~~~~~~~~~~~g~av~p~~g~~~~rV~v 126 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGT-ILWQDKPKQNPA--------------ARAVACCDLVNRGLAYWPGDGKTPALILK 126 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTS-EEEEECCCCCGG--------------GGGGCSSCSCCCCCEEECCCSSSCCEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCc-EEEEECCCCCcc--------------ccccccccccccceEEEecCCcceeEEEE
Confidence 445888877 899999998 5442 222221100000 000011221 236777321356 998
Q ss_pred EeCCCceEEEECCCCeEEEeeecCCCCC--ccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCC
Q 039124 164 ADAYYGLLVVGSKGGLATPLATQAGGKP--ILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTK 241 (259)
Q Consensus 164 aD~~~Gl~~v~~~gg~~~~l~~~~~g~p--l~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg 241 (259)
......|+.+|.++|+. .+.....+.. ......-.+. +|.||+..+... ....|.|+.||++||
T Consensus 127 ~t~dg~l~AlDa~TG~~-~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e------------~g~~g~v~A~D~~TG 192 (599)
T 1w6s_A 127 TQLDGNVAALNAETGET-VWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAE------------LGVRGYLTAYDVKTG 192 (599)
T ss_dssp ECTTSEEEEEETTTCCE-EEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGG------------GTCCCEEEEEETTTC
T ss_pred EcCCCEEEEEECCCCCE-EEeecCCCCCccceeecCCEEE-CCEEEEEecccc------------cCCCCeEEEEECCCC
Confidence 87666799999998863 3332222210 0111122332 578888765422 124578888888888
Q ss_pred cEE
Q 039124 242 SNS 244 (259)
Q Consensus 242 ~~~ 244 (259)
+..
T Consensus 193 ~~~ 195 (599)
T 1w6s_A 193 EQV 195 (599)
T ss_dssp CEE
T ss_pred cEE
Confidence 754
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.46 Score=45.59 Aligned_cols=114 Identities=11% Similarity=-0.041 Sum_probs=68.9
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcE
Q 039124 82 PESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDL 161 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L 161 (259)
+.+++|.++|..++++ .+|.|+.|+..+.....+. ++. ... ......++|.++ |+.
T Consensus 18 ~~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~-----------~~~---------~~~--~~~~~~~~~SpD-g~~ 73 (719)
T 1z68_A 18 TFFPNWISGQEYLHQS-ADNNIVLYNIETGQSYTIL-----------SNR---------TMK--SVNASNYGLSPD-RQF 73 (719)
T ss_dssp CCCCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEE-----------CHH---------HHH--TTTCSEEEECTT-SSE
T ss_pred CCccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEE-----------ccc---------ccc--ccceeeEEECCC-CCe
Confidence 4478999999755554 6899999998776322210 000 000 011357899995 775
Q ss_pred EE-EeC---------CCceEEEECCCCeE---EEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeecc
Q 039124 162 YI-ADA---------YYGLLVVGSKGGLA---TPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEG 227 (259)
Q Consensus 162 ~V-aD~---------~~Gl~~v~~~gg~~---~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~ 227 (259)
++ +.. ...|+.+|.++++. ..+ . ...+.++++|||+ |.|+..
T Consensus 74 la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l----~----~~~~~~~~SPDG~~la~~~~---------------- 129 (719)
T 1z68_A 74 VYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL----P----RPIQYLCWSPVGSKLAYVYQ---------------- 129 (719)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC----C----SSBCCEEECSSTTCEEEEET----------------
T ss_pred EEEEecCceeEEeecceEEEEEECCCCccccceec----C----cccccceECCCCCEEEEEEC----------------
Confidence 43 322 13488889998864 222 1 2367899999997 555521
Q ss_pred CCCceEEEEeCCCCcEEEe
Q 039124 228 ESTGRLLRYDPPTKSNSYC 246 (259)
Q Consensus 228 ~~~GrL~rydp~tg~~~vl 246 (259)
+.|+.+|..+++...+
T Consensus 130 ---~~i~~~~~~~g~~~~l 145 (719)
T 1z68_A 130 ---NNIYLKQRPGDPPFQI 145 (719)
T ss_dssp ---TEEEEESSTTSCCEEC
T ss_pred ---CeEEEEeCCCCCcEEE
Confidence 2577777766665544
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=92.74 E-value=1.2 Score=40.45 Aligned_cols=30 Identities=20% Similarity=0.148 Sum_probs=25.9
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGE 109 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~ 109 (259)
..||++++|++...+|++..+-.||+++.+
T Consensus 180 sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 180 SQTEGMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred CCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence 589999999877779999888889999954
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.72 E-value=2.7 Score=36.05 Aligned_cols=112 Identities=12% Similarity=0.057 Sum_probs=61.8
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
..-.+++|.++|+.+.++..||.|..|+........+. . + +. .......+.-..++|.++ |
T Consensus 59 ~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~-----~-~--~~----------~~~~~h~~~V~~v~~sp~-g 119 (330)
T 2hes_X 59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFE-----M-D--LL----------AIIEGHENEVKGVAWSND-G 119 (330)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEC-------CC-----C-E--EE----------EEEC----CEEEEEECTT-S
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcccc-----c-e--eE----------EEEcCCCCcEEEEEECCC-C
Confidence 34568999999999999999999999987432100000 0 0 00 001112233568999994 8
Q ss_pred cEEEEeCCCc-eEEEECC-CCe-EEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 160 DLYIADAYYG-LLVVGSK-GGL-ATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 160 ~L~VaD~~~G-l~~v~~~-gg~-~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
+++++-+..| +...|.. ++. .+.+. ...+. -...+.+++.++|++.+|-+.
T Consensus 120 ~~las~s~D~~v~iwd~~~~~~~~~~~~-~~~~h-~~~v~~v~~~p~~~~l~s~s~ 173 (330)
T 2hes_X 120 YYLATCSRDKSVWIWETDESGEEYECIS-VLQEH-SQDVKHVIWHPSEALLASSSY 173 (330)
T ss_dssp CEEEEEETTSCEEEEECCTTCCCCEEEE-EECCC-SSCEEEEEECSSSSEEEEEET
T ss_pred CEEEEEeCCCEEEEEeccCCCCCeEEEE-EeccC-CCceEEEEECCCCCEEEEEcC
Confidence 7766544444 5555763 221 12221 12221 135788999999987776543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.62 E-value=2.5 Score=42.46 Aligned_cols=100 Identities=15% Similarity=0.049 Sum_probs=64.2
Q ss_pred CCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 77 DEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 77 ~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
|.-....+++|+++|+++.++..||.|..|+..+.. ..+ ...+ .+.-..++|.+
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~-~~~------------------------~~~~-~~~V~~l~fsp 68 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVE-VVI------------------------KLED-RSAIKEMRFVK 68 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCE-EEE------------------------ECSS-CCCEEEEEEET
T ss_pred CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcE-EEE------------------------EcCC-CCCEEEEEEcC
Confidence 334567899999999999999999999999876541 110 0011 12235889998
Q ss_pred CCCc-EEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 157 DTGD-LYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 157 ~~G~-L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
|. |+.++....|...|.++++...-.. .. ...+.++++++|+..++
T Consensus 69 --g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~----~~V~~v~~sp~g~~l~s 115 (902)
T 2oaj_A 69 --GIYLVVINAKDTVYVLSLYSQKVLTTVF-VP----GKITSIDTDASLDWMLI 115 (902)
T ss_dssp --TTEEEEEETTCEEEEEETTTCSEEEEEE-CS----SCEEEEECCTTCSEEEE
T ss_pred --CCEEEEEECcCeEEEEECCCCcEEEEEc-CC----CCEEEEEECCCCCEEEE
Confidence 45 5555555557777887765321111 11 24678899999885554
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.27 E-value=0.064 Score=48.11 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=18.1
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~ 111 (259)
.+++++ ++.+|++..+|.|+.++...+
T Consensus 3 ssP~v~--~~~v~~gs~dg~v~a~d~~tG 29 (369)
T 2hz6_A 3 STVTLP--ETLLFVSTLDGSLHAVSKRTG 29 (369)
T ss_dssp -----C--TTEEEEEETTSEEEEEETTTC
T ss_pred CCCeee--CCEEEEEcCCCEEEEEECCCC
Confidence 355663 566999999999999997654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=92.21 E-value=4.1 Score=36.35 Aligned_cols=111 Identities=9% Similarity=-0.005 Sum_probs=66.5
Q ss_pred ccCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEE
Q 039124 75 FVDEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLR 153 (259)
Q Consensus 75 ~~~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~ 153 (259)
+.+.-...++++|.+ ++.+++++..+|.|..|+....... . .. .......+.+..++
T Consensus 227 ~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~----------~-~~-----------~~~~~~~~~v~~i~ 284 (430)
T 2xyi_A 227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS----------K-PS-----------HTVDAHTAEVNCLS 284 (430)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS----------S-CS-----------EEEECCSSCEEEEE
T ss_pred ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC----------c-ce-----------eEeecCCCCeEEEE
Confidence 334455678999998 6788889999999999987643100 0 00 01112234567899
Q ss_pred EeCCCCcEEEEeCCCc-eEEEECCCC-e-EEEeeecCCCCCccccccEEEcCCCc-EEEecCC
Q 039124 154 FNKDTGDLYIADAYYG-LLVVGSKGG-L-ATPLATQAGGKPILFANDLDVHKNGS-IFFTDTS 212 (259)
Q Consensus 154 ~d~~~G~L~VaD~~~G-l~~v~~~gg-~-~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss 212 (259)
|.+++..++++-...| |...|..+. . +..+.. . -.....+++.++|. ++++-+.
T Consensus 285 ~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~-h----~~~v~~i~~sp~~~~~l~s~~~ 342 (430)
T 2xyi_A 285 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-H----KDEIFQVQWSPHNETILASSGT 342 (430)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC-C----SSCEEEEEECSSCTTEEEEEET
T ss_pred eCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec-C----CCCEEEEEECCCCCCEEEEEeC
Confidence 9995334666555555 666676652 1 222221 1 12467889999885 6666543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.18 E-value=0.9 Score=38.46 Aligned_cols=84 Identities=7% Similarity=-0.124 Sum_probs=48.1
Q ss_pred eEEccCCCCCceeEEEcCCCC-EEEEEcC---CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCC
Q 039124 72 KLEFVDEVFGPESLEFDGLGR-GPYTGLA---DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCG 147 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~G~-~~yt~~~---~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g 147 (259)
+.++.+.-..-.+++|.++|. ++.++.. +|.|..|+.+......... . ...+
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~-----------------------~-~~~~ 66 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE-----------------------I-EKAK 66 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE-----------------------E-EESS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee-----------------------e-cccC
Confidence 445555556778999999885 4445654 8999988876553221100 0 1122
Q ss_pred CcceEEEeCCC--CcEEEEeCCCc-eEEEECCCCe
Q 039124 148 RPLGLRFNKDT--GDLYIADAYYG-LLVVGSKGGL 179 (259)
Q Consensus 148 rPlGl~~d~~~--G~L~VaD~~~G-l~~v~~~gg~ 179 (259)
....++|.++. |+++++-...| |...+.++++
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 101 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE 101 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS
T ss_pred cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC
Confidence 34578888742 45554433344 6666776653
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=92.11 E-value=2 Score=41.70 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=47.5
Q ss_pred eEEEeCCCCcEEEEeCCCc---eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeec
Q 039124 151 GLRFNKDTGDLYIADAYYG---LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLE 226 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~G---l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e 226 (259)
++.+.. +.|+++-...| |+.++.+++..+.+.. ++ .....++++++||. |+|+-++.
T Consensus 368 ~~~~~~--~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~--~~--~~~v~~~~~s~d~~~l~~~~ss~------------- 428 (741)
T 1yr2_A 368 SVGIAG--NRLFASYIHDAKSQVLAFDLDGKPAGAVSL--PG--IGSASGLSGRPGDRHAYLSFSSF------------- 428 (741)
T ss_dssp EEEEEB--TEEEEEEEETTEEEEEEEETTSCEEEECBC--SS--SCEEEEEECCBTCSCEEEEEEET-------------
T ss_pred EEEEEC--CEEEEEEEECCEEEEEEEeCCCCceeeccC--CC--CeEEEEeecCCCCCEEEEEEcCC-------------
Confidence 566663 57776543333 7777877765444431 11 12456778888876 77664432
Q ss_pred cCCCceEEEEeCCCCcEEEec
Q 039124 227 GESTGRLLRYDPPTKSNSYCV 247 (259)
Q Consensus 227 ~~~~GrL~rydp~tg~~~vl~ 247 (259)
...+.+|+||..+++.+++-
T Consensus 429 -~~P~~i~~~d~~tg~~~~l~ 448 (741)
T 1yr2_A 429 -TQPATVLALDPATAKTTPWE 448 (741)
T ss_dssp -TEEEEEEEEETTTTEEEECS
T ss_pred -CCCCEEEEEECCCCcEEEEe
Confidence 22468999999888876653
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=92.07 E-value=4.5 Score=41.18 Aligned_cols=105 Identities=10% Similarity=-0.044 Sum_probs=65.9
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC-
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD- 157 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~- 157 (259)
-..-.+++|.++|+.+.++..+|.|..|+........ .. ....+.-..++|.++
T Consensus 657 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~-~~------------------------~~~~~~v~~~~~~~~~ 711 (1249)
T 3sfz_A 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVH-TY------------------------DEHSEQVNCCHFTNKS 711 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-EE------------------------ECCSSCEEEEEECSSS
T ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEE-EE------------------------cCCCCcEEEEEEecCC
Confidence 3455689999999999999999999999987652111 00 111233457788773
Q ss_pred CCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 158 TGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 158 ~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
++.++++-...| |...|.+++....... + .-...+.+++.++|+..+|-+.
T Consensus 712 ~~~~l~sg~~d~~v~vwd~~~~~~~~~~~---~-h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 712 NHLLLATGSNDFFLKLWDLNQKECRNTMF---G-HTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp SCCEEEEEETTSCEEEEETTSSSEEEEEC---C-CSSCEEEEEECSSTTEEEEEES
T ss_pred CceEEEEEeCCCeEEEEECCCcchhheec---C-CCCCEEEEEEecCCCEEEEEEC
Confidence 234555444444 6667887775332222 1 1235788999999987776543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=91.72 E-value=2.6 Score=40.60 Aligned_cols=100 Identities=12% Similarity=0.099 Sum_probs=55.5
Q ss_pred eeEEEcCCCCEE-EEEcCCC----eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 83 ESLEFDGLGRGP-YTGLADG----RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 83 E~ia~D~~G~~~-yt~~~~G----~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
.+++|.++|+.+ |+...+| .|+.++.+++....... .. ....++++.++
T Consensus 128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~------------------------~~--~~~~~~~wspD 181 (710)
T 2xdw_A 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL------------------------ER--VKFSCMAWTHD 181 (710)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE------------------------EE--ECSCCEEECTT
T ss_pred EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc------------------------cC--cccceEEEEeC
Confidence 368899999855 4444444 78888887663221100 00 11346888885
Q ss_pred CCcEEEEeCCCc----------------eEEEECCCCeEE-EeeecCCCCCccccccEEEcCCCc-EEEe
Q 039124 158 TGDLYIADAYYG----------------LLVVGSKGGLAT-PLATQAGGKPILFANDLDVHKNGS-IFFT 209 (259)
Q Consensus 158 ~G~L~VaD~~~G----------------l~~v~~~gg~~~-~l~~~~~g~pl~~~Ndl~vd~dG~-IyfT 209 (259)
+..|+++-.... |+.++..+++.+ .++-+..+.+ .+..++.+++||+ |+++
T Consensus 182 g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~-~~~~~~~~SpDg~~l~~~ 250 (710)
T 2xdw_A 182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEP-KWMGGAELSDDGRYVLLS 250 (710)
T ss_dssp SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCT-TCEEEEEECTTSCEEEEE
T ss_pred CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCC-eEEEEEEEcCCCCEEEEE
Confidence 224555432222 888888776522 2222221111 2456889999998 5554
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.67 E-value=2.1 Score=37.85 Aligned_cols=32 Identities=19% Similarity=-0.036 Sum_probs=27.8
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~ 111 (259)
....+++|+++++.++++..+|.|..|+....
T Consensus 215 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 246 (437)
T 3gre_A 215 GAVSSICIDEECCVLILGTTRGIIDIWDIRFN 246 (437)
T ss_dssp CCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred CceEEEEECCCCCEEEEEcCCCeEEEEEcCCc
Confidence 46678999999999999999999999998654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=91.31 E-value=3.1 Score=40.31 Aligned_cols=98 Identities=10% Similarity=-0.059 Sum_probs=56.3
Q ss_pred eeEEEcCCCCEEEEEcCC---------CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEE
Q 039124 83 ESLEFDGLGRGPYTGLAD---------GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLR 153 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~---------G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~ 153 (259)
++++|.++|+.+.....+ +.++.++..++.... .....+.-...+
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~--------------------------l~~~~~~~~~~~ 118 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT--------------------------EERIPNNTQWVT 118 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC--------------------------SSCCCTTEEEEE
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE--------------------------cccCCCcceeeE
Confidence 458889999866665544 455667766542110 011122334667
Q ss_pred EeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCC----------------ccccccEEEcCCCc-EEEe
Q 039124 154 FNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKP----------------ILFANDLDVHKNGS-IFFT 209 (259)
Q Consensus 154 ~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~p----------------l~~~Ndl~vd~dG~-IyfT 209 (259)
|.++ |+.++.-....|+.++.+++....+.. +|.. +.....++..|||+ |.|+
T Consensus 119 ~SPd-G~~la~~~~~~i~~~~~~~~~~~~lt~--~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~ 188 (740)
T 4a5s_A 119 WSPV-GHKLAYVWNNDIYVKIEPNLPSYRITW--TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA 188 (740)
T ss_dssp ECSS-TTCEEEEETTEEEEESSTTSCCEECCS--CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred ECCC-CCEEEEEECCeEEEEECCCCceEEEcC--CCCccceecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence 8885 654333234568888888776665543 2221 22334588999998 5554
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=91.31 E-value=2.5 Score=40.62 Aligned_cols=78 Identities=15% Similarity=0.125 Sum_probs=45.8
Q ss_pred ceEEEeCCCCcEEEEeCCCc---eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeee
Q 039124 150 LGLRFNKDTGDLYIADAYYG---LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILL 225 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~G---l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~ 225 (259)
.++++.. +.|+++-...| |+.++.+++..+.+.. .+ ......+++++||. ++|+-++.
T Consensus 323 ~~~~~~~--~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~--~~--~~~v~~~~~s~d~~~l~~~~ss~------------ 384 (695)
T 2bkl_A 323 LSVSIVG--GHLSLEYLKDATSEVRVATLKGKPVRTVQL--PG--VGAASNLMGLEDLDDAYYVFTSF------------ 384 (695)
T ss_dssp EEEEEET--TEEEEEEEETTEEEEEEEETTCCEEEECCC--SS--SSEECCCBSCTTCSEEEEEEEET------------
T ss_pred EEEEEEC--CEEEEEEEECCEEEEEEEeCCCCeeEEecC--CC--CeEEEEeecCCCCCEEEEEEcCC------------
Confidence 3577762 67777644333 6777877664444421 11 12345666777775 66654432
Q ss_pred ccCCCceEEEEeCCCCcEEEec
Q 039124 226 EGESTGRLLRYDPPTKSNSYCV 247 (259)
Q Consensus 226 e~~~~GrL~rydp~tg~~~vl~ 247 (259)
...+.+|.||.++++.+++-
T Consensus 385 --~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 385 --TTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp --TEEEEEEEEETTTCCEEEEE
T ss_pred --CCCCEEEEEECCCCcEEEEe
Confidence 22367888998888876653
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=90.95 E-value=1.3 Score=40.28 Aligned_cols=111 Identities=8% Similarity=-0.018 Sum_probs=61.7
Q ss_pred CceeEEEcCCCCEEE----EEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 81 GPESLEFDGLGRGPY----TGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 81 gPE~ia~D~~G~~~y----t~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
...+++|+++|+.++ ++..++.|..|+..... .. .....+++.. ........+...+++|++
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~-~~----~~~~~~~~~~---------~~~~~~h~~~V~~v~~~p 159 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFS-NE----AKQQKRPFAY---------HKLLKDAGGMVIDMKWNP 159 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHH-CT----TCSSCCCSEE---------EECCCSGGGSEEEEEECS
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccc-cC----CcCCcceeee---------eeccCCCCCceEEEEECC
Confidence 478999999999888 66778888888754320 00 0000000000 000011134567999998
Q ss_pred CCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 157 DTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 157 ~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
++++++++-...| |...|..++.. .... . + .-..++.++.+++|+..++
T Consensus 160 ~~~~~las~s~Dg~v~iwD~~~~~~-~~~~-~-~-~~~~v~~v~wspdg~~las 209 (434)
T 2oit_A 160 TVPSMVAVCLADGSIAVLQVTETVK-VCAT-L-P-STVAVTSVCWSPKGKQLAV 209 (434)
T ss_dssp SCTTEEEEEETTSCEEEEEESSSEE-EEEE-E-C-GGGCEEEEEECTTSSCEEE
T ss_pred CCCCEEEEEECCCeEEEEEcCCCcc-eeec-c-C-CCCceeEEEEcCCCCEEEE
Confidence 5467766444444 66668777632 2221 1 1 1235788999999875444
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=90.86 E-value=2.7 Score=40.15 Aligned_cols=121 Identities=11% Similarity=0.103 Sum_probs=63.8
Q ss_pred CEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCC-cceEEEeCCCCcEEEEeCCCce
Q 039124 92 RGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGR-PLGLRFNKDTGDLYIADAYYGL 170 (259)
Q Consensus 92 ~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gr-PlGl~~d~~~G~L~VaD~~~Gl 170 (259)
..+|+....+.|+.++...+. ..+....... ......|+. ..|+++. ++.+|+......|
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~-~~W~~~~~~~----------------~~~~~~~~~~~~g~a~~--~~~v~~~t~dg~l 129 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGK-RLWTYNHRLP----------------DDIRPCCDVVNRGAAIY--GDKVFFGTLDASV 129 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCC-EEEEEECCCC----------------TTCCCSSCSCCCCCEEE--TTEEEEEETTTEE
T ss_pred CEEEEEcCCCCEEEEECCCCc-EEEEEcCCCC----------------cccccccccCCCccEEE--CCEEEEEeCCCEE
Confidence 447777775569999986542 2222211100 000012321 2356666 3799998776679
Q ss_pred EEEECCCCeEEEeeecCCCCC--ccccccEEEcC---CC--cEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcE
Q 039124 171 LVVGSKGGLATPLATQAGGKP--ILFANDLDVHK---NG--SIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSN 243 (259)
Q Consensus 171 ~~v~~~gg~~~~l~~~~~g~p--l~~~Ndl~vd~---dG--~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~ 243 (259)
+.+|.++|+.. +.....+.. ......-.+.. +| .||+..++.. ....|.|+.||++||+.
T Consensus 130 ~AlD~~TG~~~-W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e------------~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 130 VALNKNTGKVV-WKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDE------------FGVVGRLFARDPDTGEE 196 (582)
T ss_dssp EEEESSSCCEE-EEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGG------------GCCBCEEEEECTTTCCE
T ss_pred EEEECCCCCEE-eeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccc------------cCCCCEEEEEECCCCCE
Confidence 99999988643 322222110 00111122222 23 5777654321 13467899999888875
Q ss_pred E
Q 039124 244 S 244 (259)
Q Consensus 244 ~ 244 (259)
.
T Consensus 197 ~ 197 (582)
T 1flg_A 197 I 197 (582)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.64 E-value=1.1 Score=40.20 Aligned_cols=20 Identities=10% Similarity=-0.127 Sum_probs=16.9
Q ss_pred CEEEEEcCCCeEEEEeCCCc
Q 039124 92 RGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 92 ~~~yt~~~~G~I~ri~~~~~ 111 (259)
+.+|++..+|+|+-++.+.+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG 30 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNG 30 (339)
T ss_dssp EEEEEEETTSCEEEEETTTT
T ss_pred CEEEEEeCCCeEEEEECCCC
Confidence 46899999999999997654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.60 E-value=8.4 Score=33.82 Aligned_cols=113 Identities=7% Similarity=0.012 Sum_probs=62.8
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCC----CccEEEEEEeecCccccccccCccccccccccccC--cCCCcceEE
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGE----NVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEK--WCGRPLGLR 153 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~----~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~grPlGl~ 153 (259)
..-.+++|.++++.++++..||.|..|+.+ +.....+... . + ......+ ..+....+.
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~----i----------~~~~~~~~~~~~~~~~~~ 175 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--C----I----------RKINLKNFGKNEYAVRMR 175 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--E----E----------EEEEGGGGSSCCCEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc--e----e----------EEEEccCcccccCceEEE
Confidence 456689999999999999999999888763 2211111000 0 0 0011111 233344555
Q ss_pred --EeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 154 --FNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 154 --~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
+.+ ++.++++-...| |...|..+++........ ..-...+.++++++|+..++-+
T Consensus 176 ~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~ 233 (437)
T 3gre_A 176 AFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENS--PRHGAVSSICIDEECCVLILGT 233 (437)
T ss_dssp EEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECC--GGGCCEEEEEECTTSCEEEEEE
T ss_pred EEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccC--CCCCceEEEEECCCCCEEEEEc
Confidence 445 366666544444 667788776532222210 0123578899999998666543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=90.60 E-value=7.4 Score=37.73 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=23.4
Q ss_pred eeEEEcCCCCEEEEEcCCC-------------------eEEEEeCCCc
Q 039124 83 ESLEFDGLGRGPYTGLADG-------------------RIVRWMGENV 111 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G-------------------~I~ri~~~~~ 111 (259)
+++++|++++++|++..++ .|+.++.+.+
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG 293 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG 293 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCC
Confidence 4688999888999988775 4889988765
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=90.56 E-value=2.6 Score=40.13 Aligned_cols=54 Identities=11% Similarity=0.005 Sum_probs=32.8
Q ss_pred CCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCC
Q 039124 158 TGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKR 214 (259)
Q Consensus 158 ~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~ 214 (259)
+|.+|+++....|+.+|.++|+...-. ...+.. ...-+....+|++|++..+..
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~-~~~~~~--~~~p~~~~~~G~~yv~~~~G~ 528 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNF-KMPSGG--IGSPMTYSFKGKQYIGSMYGV 528 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEE-ECSSCC--CSCCEEEEETTEEEEEEEECC
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEE-eCCCCc--EeeeEEEEECCEEEEEEECCC
Confidence 478888766666999999888633222 222211 122234457899999876554
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=90.36 E-value=7.8 Score=33.12 Aligned_cols=78 Identities=8% Similarity=-0.046 Sum_probs=50.0
Q ss_pred ccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 75 FVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 75 ~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
+.+.-..-.+++|.+++..++++..||.|..|+........ . .....+.-..++|
T Consensus 72 l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~-~------------------------~~~h~~~v~~v~~ 126 (343)
T 2xzm_R 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK-R------------------------FVGHQSEVYSVAF 126 (343)
T ss_dssp ECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE-E------------------------EECCCSCEEEEEE
T ss_pred hccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE-E------------------------EcCCCCcEEEEEE
Confidence 34444455689999999989999999999999976542111 0 0111233568999
Q ss_pred eCCCCcEEEEeCCCc-eEEEECCCC
Q 039124 155 NKDTGDLYIADAYYG-LLVVGSKGG 178 (259)
Q Consensus 155 d~~~G~L~VaD~~~G-l~~v~~~gg 178 (259)
.++ |+.+++-...| |...|..+.
T Consensus 127 sp~-~~~l~s~~~d~~i~~wd~~~~ 150 (343)
T 2xzm_R 127 SPD-NRQILSAGAEREIKLWNILGE 150 (343)
T ss_dssp CSS-TTEEEEEETTSCEEEEESSSC
T ss_pred CCC-CCEEEEEcCCCEEEEEeccCC
Confidence 995 76665444444 666676654
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=90.15 E-value=7.2 Score=33.78 Aligned_cols=79 Identities=11% Similarity=0.003 Sum_probs=50.7
Q ss_pred ccCCCCCceeEEEcCCCCEEEEEcCCCe-EEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEE
Q 039124 75 FVDEVFGPESLEFDGLGRGPYTGLADGR-IVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLR 153 (259)
Q Consensus 75 ~~~~l~gPE~ia~D~~G~~~yt~~~~G~-I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~ 153 (259)
+.+.-..-.+++|.++|+.+.++..||. |..|+........ . +......+.-..++
T Consensus 191 ~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~-~----------------------~~~g~h~~~v~~~~ 247 (355)
T 3vu4_A 191 IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR-E----------------------FRRGLDRADVVDMK 247 (355)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE-E----------------------EECTTCCSCEEEEE
T ss_pred EEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-E----------------------EEcCCCCCcEEEEE
Confidence 3444456678999999999999999998 8889886542111 0 00000123456899
Q ss_pred EeCCCCcEEEEeCCCc-eEEEECCC
Q 039124 154 FNKDTGDLYIADAYYG-LLVVGSKG 177 (259)
Q Consensus 154 ~d~~~G~L~VaD~~~G-l~~v~~~g 177 (259)
|.++ |+++++-...| |...+.+.
T Consensus 248 ~s~~-~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 248 WSTD-GSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp ECTT-SCEEEEEETTCEEEEEESSC
T ss_pred ECCC-CCEEEEEECCCEEEEEEccC
Confidence 9994 88777655555 44446543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=89.94 E-value=5 Score=34.11 Aligned_cols=106 Identities=14% Similarity=0.085 Sum_probs=60.2
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC-CC
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD-TG 159 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~-~G 159 (259)
.=.+++|+++|+.+.++..||.|..|+.......... ......+.-..++|.+. +|
T Consensus 15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~-----------------------~l~gH~~~V~~v~~~~~~~~ 71 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIA-----------------------DLRGHEGPVWQVAWAHPMYG 71 (316)
T ss_dssp CEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEE-----------------------EEECCSSCEEEEEECCGGGS
T ss_pred eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEE-----------------------EEcCCCccEEEEEeCCCCCC
Confidence 3357899999999999999999998886543111100 00111233457888531 25
Q ss_pred cEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCC--CcEEEecC
Q 039124 160 DLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKN--GSIFFTDT 211 (259)
Q Consensus 160 ~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~d--G~IyfTDs 211 (259)
+++++-+..| +...|.+++..+.+.. ..+. -...+.+++.++ |.+.+|-+
T Consensus 72 ~~l~s~s~D~~v~iWd~~~~~~~~~~~-~~~h-~~~V~~v~~~p~~~g~~lasgs 124 (316)
T 3bg1_A 72 NILASCSYDRKVIIWREENGTWEKSHE-HAGH-DSSVNSVCWAPHDYGLILACGS 124 (316)
T ss_dssp SCEEEEETTSCEEEECCSSSCCCEEEE-ECCC-SSCCCEEEECCTTTCSCEEEEC
T ss_pred CEEEEEECCCEEEEEECCCCcceEEEE-ccCC-CCceEEEEECCCCCCcEEEEEc
Confidence 6555444444 5556777653222211 1221 135788888887 66555543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=89.93 E-value=14 Score=35.40 Aligned_cols=82 Identities=9% Similarity=-0.092 Sum_probs=43.7
Q ss_pred eeEEEcCCCCEEEEEcCCCe-------------EEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 83 ESLEFDGLGRGPYTGLADGR-------------IVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~-------------I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
.+++|.++|+.++....+.. |++++.++..... .++ .........-
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~----------~lv-----------~~~~~~~~~~ 229 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD----------TVV-----------HERTGDPTTF 229 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC----------EEE-----------ECCCCCTTCE
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc----------eEE-----------EecCCCCEEE
Confidence 57899999986665544433 8888876542000 000 0000001123
Q ss_pred ceEEEeCCCCcEEE-EeCCC----ceEEEECCCCeEEEeeec
Q 039124 150 LGLRFNKDTGDLYI-ADAYY----GLLVVGSKGGLATPLATQ 186 (259)
Q Consensus 150 lGl~~d~~~G~L~V-aD~~~----Gl~~v~~~gg~~~~l~~~ 186 (259)
.++++.++ |+.++ +-... .|+.++..++..+.+...
T Consensus 230 ~~~~~SpD-G~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 270 (695)
T 2bkl_A 230 LQSDLSRD-GKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG 270 (695)
T ss_dssp EEEEECTT-SCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC
T ss_pred EEEEECCC-CCEEEEEEeCCCCceEEEEEcCCCCceEEeecC
Confidence 47888885 65433 22222 477777766666666654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=89.42 E-value=9.9 Score=36.34 Aligned_cols=82 Identities=13% Similarity=0.080 Sum_probs=51.5
Q ss_pred ceEEEeCCCCcEEEEeCCC--ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeecc
Q 039124 150 LGLRFNKDTGDLYIADAYY--GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEG 227 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~--Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~ 227 (259)
.+.++.. +|.|||.-... .+..+|+.+++-+.+.. ... -+.-...++-+||+||+.-.... . .
T Consensus 246 ~~~~~~~-~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~-~~~--~R~~~s~~~~~dg~iyv~GG~~~--~---------~ 310 (656)
T 1k3i_A 246 PGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPD-MQV--ARGYQSSATMSDGRVFTIGGSWS--G---------G 310 (656)
T ss_dssp CEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCC-CSS--CCSSCEEEECTTSCEEEECCCCC--S---------S
T ss_pred ccccCCC-CCCEEEeCCCCCCceEEecCcCCceeECCC-CCc--cccccceEEecCCeEEEEeCccc--C---------C
Confidence 3567766 48999985543 38999999886554432 111 11223566667999998654211 0 1
Q ss_pred CCCceEEEEeCCCCcEEEe
Q 039124 228 ESTGRLLRYDPPTKSNSYC 246 (259)
Q Consensus 228 ~~~GrL~rydp~tg~~~vl 246 (259)
.....+.+|||.+++.+.+
T Consensus 311 ~~~~~~e~yd~~t~~W~~~ 329 (656)
T 1k3i_A 311 VFEKNGEVYSPSSKTWTSL 329 (656)
T ss_dssp SCCCCEEEEETTTTEEEEE
T ss_pred cccccceEeCCCCCcceeC
Confidence 1234689999998887776
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.97 E-value=8.2 Score=37.51 Aligned_cols=34 Identities=12% Similarity=0.050 Sum_probs=28.1
Q ss_pred CCCCceeEEEcCC--CCEEEEEcCCCeEEEEeCCCc
Q 039124 78 EVFGPESLEFDGL--GRGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 78 ~l~gPE~ia~D~~--G~~~yt~~~~G~I~ri~~~~~ 111 (259)
.-..-.+++|.++ |+.++++..+|.|..|+....
T Consensus 98 h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~ 133 (753)
T 3jro_A 98 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 133 (753)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence 3456678999998 999999999999999987554
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=87.28 E-value=15 Score=32.35 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=26.2
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~ 111 (259)
.+++|.++|+.+.++..||.|..|+....
T Consensus 151 ~sv~fspdg~~lasgs~Dg~v~iWd~~~~ 179 (420)
T 4gga_A 151 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 179 (420)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred EEEEECCCCCEEEEEECCCeEEEEEcCCC
Confidence 58999999999999999999999998765
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.21 E-value=9.1 Score=36.93 Aligned_cols=100 Identities=8% Similarity=0.033 Sum_probs=62.3
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCc-CCCcceEEEeCC
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKW-CGRPLGLRFNKD 157 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~grPlGl~~d~~ 157 (259)
-..-.+++|.|+|..+-++..+|.|..|+.++. +..+. .+ .+. ...-..++|.++
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~-l~~l~---~~--------------------~~~~~~sv~svafSPD 140 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKM-LTNLD---SK--------------------GNLSSRTYHCFEWNPI 140 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTEE-EEECC---CS--------------------SCSTTTCEEEEEECSS
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCce-eeecc---CC--------------------CccccccEEEEEEcCC
Confidence 355678999999998999999999999986542 22110 00 000 012358999995
Q ss_pred CCcEEEEeCCCc-eEEEECCCCe--------EEEeeecCCCCCccccccEEEcCCC
Q 039124 158 TGDLYIADAYYG-LLVVGSKGGL--------ATPLATQAGGKPILFANDLDVHKNG 204 (259)
Q Consensus 158 ~G~L~VaD~~~G-l~~v~~~gg~--------~~~l~~~~~g~pl~~~Ndl~vd~dG 204 (259)
|+++++-...| |...+.+++. +..+-....|. ......++..|||
T Consensus 141 -G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh-~~~V~sVawSPdg 194 (588)
T 2j04_A 141 -ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGS-KDWVTHIVWYEDV 194 (588)
T ss_dssp -SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTC-CCCEEEEEEETTE
T ss_pred -CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccc-cccEEEEEEcCCc
Confidence 76655544455 5555877763 23332222332 3578899999999
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=86.72 E-value=11 Score=36.33 Aligned_cols=31 Identities=13% Similarity=0.328 Sum_probs=21.3
Q ss_pred eEEEeCCCCcEEEEeCCC-------------------ceEEEECCCCeEE
Q 039124 151 GLRFNKDTGDLYIADAYY-------------------GLLVVGSKGGLAT 181 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~-------------------Gl~~v~~~gg~~~ 181 (259)
.+++|++++.+|+..... .|+.+|+++|+..
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~ 283 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLA 283 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCcee
Confidence 478898656777763211 2899999998744
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=86.66 E-value=8.3 Score=33.40 Aligned_cols=96 Identities=14% Similarity=0.166 Sum_probs=52.0
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcE
Q 039124 82 PESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDL 161 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L 161 (259)
+.++++..+++ +|+...+|.|+|-...+..|..... ...+...++++++ ++.+
T Consensus 124 ~~~i~~~~~~~-~~~~~~~g~v~~S~DgG~tW~~~~~-------------------------~~~~~~~~~~~~~-~~~~ 176 (327)
T 2xbg_A 124 PRLIKALGNGS-AEMITNVGAIYRTKDSGKNWQALVQ-------------------------EAIGVMRNLNRSP-SGEY 176 (327)
T ss_dssp EEEEEEEETTE-EEEEETTCCEEEESSTTSSEEEEEC-------------------------SCCCCEEEEEECT-TSCE
T ss_pred eEEEEEECCCC-EEEEeCCccEEEEcCCCCCCEEeec-------------------------CCCcceEEEEEcC-CCcE
Confidence 44666655566 5555567778876555555654210 0112345788888 4888
Q ss_pred EEEeCCCceEEEECCCCe-EEEeeecCCCCCccccccEEEcCCCcEEE
Q 039124 162 YIADAYYGLLVVGSKGGL-ATPLATQAGGKPILFANDLDVHKNGSIFF 208 (259)
Q Consensus 162 ~VaD~~~Gl~~v~~~gg~-~~~l~~~~~g~pl~~~Ndl~vd~dG~Iyf 208 (259)
|++....++++-+..+|. -+.+. ... -....+++++++|++|+
T Consensus 177 ~~~g~~G~~~~S~d~gG~tW~~~~-~~~---~~~~~~~~~~~~g~~~~ 220 (327)
T 2xbg_A 177 VAVSSRGSFYSTWEPGQTAWEPHN-RTT---SRRLHNMGFTPDGRLWM 220 (327)
T ss_dssp EEEETTSSEEEEECTTCSSCEEEE-CCS---SSCEEEEEECTTSCEEE
T ss_pred EEEECCCcEEEEeCCCCCceeECC-CCC---CCccceeEECCCCCEEE
Confidence 877655557766544232 23332 111 12345666666666654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=86.42 E-value=18 Score=32.56 Aligned_cols=103 Identities=8% Similarity=-0.123 Sum_probs=60.8
Q ss_pred CCceeEEEcCC-CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 80 FGPESLEFDGL-GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 80 ~gPE~ia~D~~-G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
....+++|.++ ++++.++..||.|..|+..... ..... .........++++++
T Consensus 150 ~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~-~~~~~------------------------~~~~~~v~~v~wspd- 203 (434)
T 2oit_A 150 GMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV-KVCAT------------------------LPSTVAVTSVCWSPK- 203 (434)
T ss_dssp GSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE-EEEEE------------------------ECGGGCEEEEEECTT-
T ss_pred CceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc-ceeec------------------------cCCCCceeEEEEcCC-
Confidence 45678999996 7888889999999999876541 11100 011234678999995
Q ss_pred CcEEEEeCCC-ceEEEECCCCeEEEeeecC--CCCCccccccEEEcCCCcEEE
Q 039124 159 GDLYIADAYY-GLLVVGSKGGLATPLATQA--GGKPILFANDLDVHKNGSIFF 208 (259)
Q Consensus 159 G~L~VaD~~~-Gl~~v~~~gg~~~~l~~~~--~g~pl~~~Ndl~vd~dG~Iyf 208 (259)
|+.+++-... .|..+|.++.....+.... ..........+..++++.+.+
T Consensus 204 g~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~ 256 (434)
T 2oit_A 204 GKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAI 256 (434)
T ss_dssp SSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred CCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEE
Confidence 7655543344 4777788744333332111 110112456777777766443
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=86.36 E-value=13 Score=30.82 Aligned_cols=105 Identities=17% Similarity=0.142 Sum_probs=59.2
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
........+.++++.++++..+|.+..|+......... ...........+++..+.
T Consensus 128 ~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~------------------------~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV------------------------QDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE------------------------CSSSCSSCEEEEEECSCS
T ss_pred CCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEE------------------------EeccccCcccceEEccCC
Confidence 34555667777888888999999998888765421110 001112223456666532
Q ss_pred -CcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 159 -GDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 159 -G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
..++++-...+ |...+..+++..... .+. -...+.++++++|++.+|-+
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~---~~h-~~~v~~~~~s~~~~~l~s~s 234 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNH---IGH-TGYLNTVTVSPDGSLCASGG 234 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEE---CCC-SSCEEEEEECTTSSEEEEEE
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEe---cCC-CCcEEEEEECCCCCEEEEEe
Confidence 34444433334 556687776533222 121 12467889999988766543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.52 E-value=16 Score=31.04 Aligned_cols=78 Identities=9% Similarity=0.080 Sum_probs=46.5
Q ss_pred CCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc--cEEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 77 DEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENV--GWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 77 ~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~--~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
+.-..-.+++|.++|+.+.++..||.|..|+.... .+.... ......+....++|
T Consensus 105 ~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~-----------------------~~~~h~~~v~~v~~ 161 (330)
T 2hes_X 105 GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECIS-----------------------VLQEHSQDVKHVIW 161 (330)
T ss_dssp ----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEE-----------------------EECCCSSCEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEE-----------------------EeccCCCceEEEEE
Confidence 33344568999999999999999999999987321 111100 00111234568999
Q ss_pred eCCCCcEEEEeCCCc-eEEEECCCC
Q 039124 155 NKDTGDLYIADAYYG-LLVVGSKGG 178 (259)
Q Consensus 155 d~~~G~L~VaD~~~G-l~~v~~~gg 178 (259)
.++ ++++++-...| |...+..++
T Consensus 162 ~p~-~~~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 162 HPS-EALLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp CSS-SSEEEEEETTSCEEEEEEETT
T ss_pred CCC-CCEEEEEcCCCeEEEEECCCC
Confidence 994 77777655555 444455444
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.46 E-value=0.35 Score=43.20 Aligned_cols=20 Identities=10% Similarity=-0.290 Sum_probs=13.9
Q ss_pred CEEEEEcCCCeEEEEeCCCc
Q 039124 92 RGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 92 ~~~yt~~~~G~I~ri~~~~~ 111 (259)
+.+|++..+|.|+.++...+
T Consensus 93 ~~v~~g~~dg~v~a~D~~tG 112 (369)
T 2hz6_A 93 GILYMGKKQDIWYVIDLLTG 112 (369)
T ss_dssp --CCCCEEEEEEEEECCC--
T ss_pred CEEEEEeCCCEEEEEECCCC
Confidence 44788888899999988654
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=85.15 E-value=15 Score=31.70 Aligned_cols=63 Identities=16% Similarity=0.136 Sum_probs=40.4
Q ss_pred CCcceEEEeCCCCcEEEEeCCCc--eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 147 GRPLGLRFNKDTGDLYIADAYYG--LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 147 grPlGl~~d~~~G~L~VaD~~~G--l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
+....++|++ +|+++++-+..| +...|..+++...... .|..-...+.+++++||+..++-+.
T Consensus 196 ~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~--~g~h~~~v~~~~~s~~~~~l~s~s~ 260 (355)
T 3vu4_A 196 NPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFR--RGLDRADVVDMKWSTDGSKLAVVSD 260 (355)
T ss_dssp SCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEE--CTTCCSCEEEEEECTTSCEEEEEET
T ss_pred CceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEE--cCCCCCcEEEEEECCCCCEEEEEEC
Confidence 4456899999 488777655555 5555888765322221 1211235789999999997776543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=85.05 E-value=12 Score=35.95 Aligned_cols=78 Identities=13% Similarity=0.184 Sum_probs=42.6
Q ss_pred EEeCCCCcEEEEeCCC---ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccC
Q 039124 153 RFNKDTGDLYIADAYY---GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGE 228 (259)
Q Consensus 153 ~~d~~~G~L~VaD~~~---Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~ 228 (259)
.+..+++.|+++-... .|..++.+++..+.+.....+ ....+..+++|. ++|+-++. .
T Consensus 332 ~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~----~~~~~~~~~d~~~l~~~~ss~--------------~ 393 (693)
T 3iuj_A 332 TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLG----SVSGFNGKHDDPALYFGFENY--------------A 393 (693)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSS----EEEECCCCTTCSCEEEEEECS--------------S
T ss_pred EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCc----eEEeeecCCCCCEEEEEecCC--------------C
Confidence 4444323555543333 377788887765544321111 222344455654 77764432 2
Q ss_pred CCceEEEEeCCCCcEEEecC
Q 039124 229 STGRLLRYDPPTKSNSYCVR 248 (259)
Q Consensus 229 ~~GrL~rydp~tg~~~vl~~ 248 (259)
..+.+++||.++++.+++.+
T Consensus 394 tP~~l~~~d~~~g~~~~l~~ 413 (693)
T 3iuj_A 394 QPPTLYRFEPKSGAISLYRA 413 (693)
T ss_dssp SCCEEEEECTTTCCEEEEEC
T ss_pred CCCEEEEEECCCCeEEEEEe
Confidence 23689999988888777653
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=84.52 E-value=21 Score=31.49 Aligned_cols=67 Identities=12% Similarity=0.179 Sum_probs=43.6
Q ss_pred EcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEEeC
Q 039124 87 FDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADA 166 (259)
Q Consensus 87 ~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~VaD~ 166 (259)
+.++++.++++..+|.|..|+....... .. .....+....++++++ |+.+++-.
T Consensus 276 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~-~~------------------------~~~~~~~v~~~~~~~~-~~~l~sg~ 329 (464)
T 3v7d_B 276 VSGHGNIVVSGSYDNTLIVWDVAQMKCL-YI------------------------LSGHTDRIYSTIYDHE-RKRCISAS 329 (464)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTTEEE-EE------------------------ECCCSSCEEEEEEETT-TTEEEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcEE-EE------------------------ecCCCCCEEEEEEcCC-CCEEEEEe
Confidence 3456888999999999999998654211 00 0111234568899985 76666544
Q ss_pred CCc-eEEEECCCCe
Q 039124 167 YYG-LLVVGSKGGL 179 (259)
Q Consensus 167 ~~G-l~~v~~~gg~ 179 (259)
..| |...|.++++
T Consensus 330 ~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 330 MDTTIRIWDLENGE 343 (464)
T ss_dssp TTSCEEEEETTTTE
T ss_pred CCCcEEEEECCCCc
Confidence 445 6677887775
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.26 E-value=17 Score=30.37 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=50.1
Q ss_pred eEEEeCCCCcEEEEeCC------CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeee
Q 039124 151 GLRFNKDTGDLYIADAY------YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFIL 224 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~------~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~ 224 (259)
+++.. ++.|||.-.. ..++.+|+++++-+.+.. . |..+.+--++.-+|.||+--....
T Consensus 199 ~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~---~~~r~~~~~~~~~~~i~v~GG~~~---------- 262 (302)
T 2xn4_A 199 GVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD-M---NMCRRNAGVCAVNGLLYVVGGDDG---------- 262 (302)
T ss_dssp EEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC-C---SSCCBSCEEEEETTEEEEECCBCS----------
T ss_pred cEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC-C---CCccccCeEEEECCEEEEECCcCC----------
Confidence 44444 3789997543 348899999887655542 1 222223333344778887643211
Q ss_pred eccCCCceEEEEeCCCCcEEEecCCCC
Q 039124 225 LEGESTGRLLRYDPPTKSNSYCVRWLG 251 (259)
Q Consensus 225 ~e~~~~GrL~rydp~tg~~~vl~~~L~ 251 (259)
......+++||+.+++.+.+...+.
T Consensus 263 --~~~~~~v~~yd~~~~~W~~~~~~~~ 287 (302)
T 2xn4_A 263 --SCNLASVEYYNPTTDKWTVVSSCMS 287 (302)
T ss_dssp --SSBCCCEEEEETTTTEEEECSSCCS
T ss_pred --CcccccEEEEcCCCCeEEECCcccC
Confidence 1223579999999998888754554
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=83.61 E-value=17 Score=29.75 Aligned_cols=120 Identities=12% Similarity=0.052 Sum_probs=65.2
Q ss_pred CCCCCceeEEEcCC--CCEEEEEcCCCeEEEEeCCCcc-EEEEEEeecCccccccccCccccccccccccCcCCCcceEE
Q 039124 77 DEVFGPESLEFDGL--GRGPYTGLADGRIVRWMGENVG-WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLR 153 (259)
Q Consensus 77 ~~l~gPE~ia~D~~--G~~~yt~~~~G~I~ri~~~~~~-~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~ 153 (259)
+.-..-.+++|.++ ++.++++..+|.|..|+..... ...+...... ...+ ............++
T Consensus 108 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~-----------~~~~~~~~~~~~~~ 174 (351)
T 3f3f_A 108 DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM--KVLS-----------IPPANHLQSDFCLS 174 (351)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE--ESCS-----------CCCSSCSCCCEEEE
T ss_pred ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc--cccc-----------cccCCcccceeEEE
Confidence 33455678999998 9989999999999999865431 0011110000 0000 01112233456788
Q ss_pred EeCC--CCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCC----cEEEecC
Q 039124 154 FNKD--TGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNG----SIFFTDT 211 (259)
Q Consensus 154 ~d~~--~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG----~IyfTDs 211 (259)
+.++ +++++++-...+ ++..+...+....+. ...+. -...+.+++.++| ++.+|-+
T Consensus 175 ~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~h-~~~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 175 WCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAA-KLPGH-KSLIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp ECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEE-ECCCC-CSCEEEEEECCCSSCSSEEEEEEE
T ss_pred eccCCCCCcEEEEecCCCcEEEEccCCCceeeee-ecCCC-CcceeEEEECCCCCCcceEEEEEc
Confidence 8873 255555544445 444444555433332 23332 2356788999987 5555543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.09 E-value=18 Score=29.63 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=26.0
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~ 111 (259)
.+++|.++|+.+.++..||.|..|+....
T Consensus 71 ~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~ 99 (318)
T 4ggc_A 71 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 99 (318)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred EEEEECCCCCEEEEEECCCcEEEeecCCc
Confidence 47899999999999999999999998765
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=82.84 E-value=7.4 Score=37.79 Aligned_cols=53 Identities=11% Similarity=0.077 Sum_probs=31.0
Q ss_pred CCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCC
Q 039124 158 TGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSK 213 (259)
Q Consensus 158 ~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~ 213 (259)
+|.+|++.....|+.+|.++|+. .......... ..+-+....||+.|+.-.+.
T Consensus 486 gglvf~gt~dg~l~a~D~~tG~~-lw~~~~~~~~--~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 486 GNLVFEGSADGRVIAYAADTGEK-LWEQPAASGV--MAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCE-EEEEECSSCC--CSCCEEEEETTEEEEEEEEC
T ss_pred CCEEEEECCCCcEEEEECCCCcc-ceeeeCCCCc--ccCceEEEECCEEEEEEEec
Confidence 46667775555588899998853 2222222111 12235556899999886543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=82.76 E-value=24 Score=30.99 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=21.3
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~ 111 (259)
.-.++++ +++.++++..||.|..|+....
T Consensus 175 ~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 175 SVLCLQY--DERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred cEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence 3445665 5777888888999888887654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=82.68 E-value=20 Score=34.51 Aligned_cols=50 Identities=8% Similarity=0.127 Sum_probs=27.5
Q ss_pred CCCCcEEEEeCC----CceEEEECCCC--eEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 156 KDTGDLYIADAY----YGLLVVGSKGG--LATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 156 ~~~G~L~VaD~~----~Gl~~v~~~gg--~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
++++.||+.-.. ..|++++.+++ ..+.++...++ ...+++++ ++.++++-
T Consensus 325 ~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~----~l~~~~~~-~~~lv~~~ 380 (741)
T 1yr2_A 325 GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD----NLESVGIA-GNRLFASY 380 (741)
T ss_dssp EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS----EEEEEEEE-BTEEEEEE
T ss_pred ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC----eEEEEEEE-CCEEEEEE
Confidence 333566665322 23899998873 45555533222 24566666 55677664
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=81.89 E-value=9.9 Score=36.20 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=32.9
Q ss_pred CCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCC
Q 039124 158 TGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSK 213 (259)
Q Consensus 158 ~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~ 213 (259)
+|.+|+++....|+.+|.++|+. .......+. ...+-+....||+.|+...+.
T Consensus 497 gglvf~g~~dg~l~A~D~~tG~~-lW~~~~~~g--~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 497 GNLVFTGTGDGYFKAFDAKSGKE-LWKFQTGSG--IVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp TTEEEEECTTSEEEEEETTTCCE-EEEEECSSC--CCSCCEEEEETTEEEEEEEEC
T ss_pred CCEEEEECCCCcEEEEECCCCCE-EEEecCCCC--cccCceEEEECCEEEEEEEcc
Confidence 47788877665689999988852 222222211 122335556899999987654
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=80.72 E-value=6.7 Score=37.70 Aligned_cols=68 Identities=19% Similarity=0.302 Sum_probs=41.8
Q ss_pred CCcEEEEeC-CCceEEEEC-CCCeEEEeeecCCCCCc--------cccccEEEc-CCCc----EEEecCCCCCCccccee
Q 039124 158 TGDLYIADA-YYGLLVVGS-KGGLATPLATQAGGKPI--------LFANDLDVH-KNGS----IFFTDTSKRYNRVDHFF 222 (259)
Q Consensus 158 ~G~L~VaD~-~~Gl~~v~~-~gg~~~~l~~~~~g~pl--------~~~Ndl~vd-~dG~----IyfTDss~~~~~~~~~~ 222 (259)
+|.+|++.. ...|+.+|. ++|+ +.+......... ....++++. .+|. ||+...
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~-~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~----------- 129 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGT-ILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL----------- 129 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTS-EEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-----------
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCc-EEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-----------
Confidence 379999987 456999999 7885 334333322110 112456774 3566 888643
Q ss_pred eeeccCCCceEEEEeCCCCcEE
Q 039124 223 ILLEGESTGRLLRYDPPTKSNS 244 (259)
Q Consensus 223 ~~~e~~~~GrL~rydp~tg~~~ 244 (259)
.|+|+.+|.+||+..
T Consensus 130 -------dg~l~AlDa~TG~~~ 144 (599)
T 1w6s_A 130 -------DGNVAALNAETGETV 144 (599)
T ss_dssp -------TSEEEEEETTTCCEE
T ss_pred -------CCEEEEEECCCCCEE
Confidence 357777777777653
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=80.22 E-value=30 Score=30.37 Aligned_cols=98 Identities=16% Similarity=0.096 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEEeCCCc
Q 039124 90 LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYG 169 (259)
Q Consensus 90 ~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~VaD~~~G 169 (259)
+++.++++..+|.|..|+........ .... . ....+....+++++ +++++-...|
T Consensus 328 ~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~--------------------~-~~~~~~v~~~~~~~---~~l~s~~~dg 382 (445)
T 2ovr_B 328 KDNILVSGNADSTVKIWDIKTGQCLQ-TLQG--------------------P-NKHQSAVTCLQFNK---NFVITSSDDG 382 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCEEE-EECS--------------------T-TSCSSCEEEEEECS---SEEEEEETTS
T ss_pred eCCEEEEEeCCCeEEEEECCCCcEEE-EEcc--------------------C-CCCCCCEEEEEECC---CEEEEEeCCC
Confidence 35567777777777777765432110 0000 0 00122345677753 4444444444
Q ss_pred -eEEEECCCCeE-EEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 170 -LLVVGSKGGLA-TPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 170 -l~~v~~~gg~~-~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
|...+..+++. ..+.....+..-...+.++++++|.+..+-+.
T Consensus 383 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~ 427 (445)
T 2ovr_B 383 TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR 427 (445)
T ss_dssp EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS
T ss_pred eEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEccc
Confidence 66668776653 33322112223346789999999987666443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 259 | ||||
| d1pjxa_ | 314 | b.68.6.1 (A:) Diisopropylfluorophosphatase (phosph | 2e-08 |
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Length = 314 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Score = 51.6 bits (122), Expect = 2e-08
Identities = 30/177 (16%), Positives = 56/177 (31%), Gaps = 31/177 (17%)
Query: 68 LVTGKLEFV-DEVFGPESLEFDGLGR-------GPYTGLADGRIVRWMGENVGWETFAIV 119
++ V +++ G E FD G G G I+R +
Sbjct: 5 VIEPLFTKVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC-- 62
Query: 120 TSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGL 179
+ + + G P G + ++D L++AD GLLVV + G
Sbjct: 63 -------------------KPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTF 103
Query: 180 ATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRY 236
+ G+ + ND G+++ T + + E G + +
Sbjct: 104 EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPA--GEVAPADYTRSMQEKFGSIYCF 158
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 259 | |||
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.9 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.79 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.69 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 99.54 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.48 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.48 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.41 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 99.37 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.33 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 99.27 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.27 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 99.25 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 99.23 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.2 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.19 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.03 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.77 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 98.37 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.12 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.04 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 97.99 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 97.91 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 97.84 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 97.64 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 97.58 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.49 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 97.41 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 97.38 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.06 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 96.95 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 96.93 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 96.88 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 96.54 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 96.47 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 96.39 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 96.32 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 96.27 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 96.26 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.24 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.21 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 96.1 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 96.08 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 96.04 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 95.97 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 95.96 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 95.86 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 95.61 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 95.45 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 95.36 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 95.19 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 95.18 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.04 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 94.99 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 94.97 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.2 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 93.73 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 93.62 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 93.51 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 93.32 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 93.03 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 93.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 92.57 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 91.41 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 91.01 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 90.38 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 89.73 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 88.17 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 88.08 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 87.22 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 87.14 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 85.49 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 84.75 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 84.74 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 84.34 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 84.1 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 83.86 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 83.05 |
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.90 E-value=3.7e-23 Score=184.23 Aligned_cols=162 Identities=19% Similarity=0.209 Sum_probs=126.5
Q ss_pred eEEccCCCCCceeEEEcCCCCEEEEEcC-------CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccC
Q 039124 72 KLEFVDEVFGPESLEFDGLGRGPYTGLA-------DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEK 144 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~G~~~yt~~~-------~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~ 144 (259)
+++.+ .+.+||+++||++|++|+++.. +|+|+|+++++...+.+... ....
T Consensus 11 ~~v~~-~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~---------------------~~~~ 68 (314)
T d1pjxa_ 11 TKVTE-DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---------------------EVNG 68 (314)
T ss_dssp EEEEC-CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC---------------------EETT
T ss_pred EEeec-CCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECC---------------------cccc
Confidence 34444 5999999999999997777543 58899999987644433211 1123
Q ss_pred cCCCcceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeee
Q 039124 145 WCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFIL 224 (259)
Q Consensus 145 ~~grPlGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~ 224 (259)
.+++|.||+|+++++.|||+|...++++++++++..+.+....+|.+++.|||+++|++|+|||||++..+...+...
T Consensus 69 ~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~-- 146 (314)
T d1pjxa_ 69 YGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR-- 146 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB--
T ss_pred CCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccc--
Confidence 467899999999633589999999999999999866656666788899999999999999999999986654433222
Q ss_pred eccCCCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 225 LEGESTGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 225 ~e~~~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
....+.|+||+++++ |+...+..++.+||||++
T Consensus 147 ~~~~~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~ 179 (314)
T d1pjxa_ 147 SMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAV 179 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEE
T ss_pred eeccCCceEEEEeec-CceeEeeCCcceeeeeEE
Confidence 224688999999997 788889999999999986
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.79 E-value=7.8e-19 Score=155.84 Aligned_cols=141 Identities=15% Similarity=0.217 Sum_probs=113.4
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
-...|+++||++|++||+++.+|+|+|+++++.....+ .....+.|.||++++ +
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~-------------------------~~~~~~~p~gla~~~-d 92 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP-------------------------FVSHKANPAAIKIHK-D 92 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE-------------------------EECSSSSEEEEEECT-T
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEE-------------------------EeCCCCCeeEEEECC-C
Confidence 34569999999999999999999999999987632221 112356799999999 5
Q ss_pred CcEEEEeCC-----CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceE
Q 039124 159 GDLYIADAY-----YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRL 233 (259)
Q Consensus 159 G~L~VaD~~-----~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL 233 (259)
|+||||+.. .+++.++.+++....+... ..+...+||++++++|++||||+... ...+.|.+
T Consensus 93 G~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~nd~~~d~~G~l~vtd~~~~-----------~~~~~g~v 159 (319)
T d2dg1a1 93 GRLFVCYLGDFKSTGGIFAATENGDNLQDIIED--LSTAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGV 159 (319)
T ss_dssp SCEEEEECTTSSSCCEEEEECTTSCSCEEEECS--SSSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEE
T ss_pred CCEEEEecCCCccceeEEEEcCCCceeeeeccC--CCcccCCcceeEEeccceeecccccc-----------cccCccee
Confidence 999999753 3589999988876665533 23467899999999999999998642 23567899
Q ss_pred EEEeCCCCcEEEecCCCCCcceeEE
Q 039124 234 LRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 234 ~rydp~tg~~~vl~~~L~~pNGval 258 (259)
+|++|+.+.++.+.+++.+||||+|
T Consensus 160 ~~~~~dg~~~~~~~~~~~~pnGia~ 184 (319)
T d2dg1a1 160 YYVSPDFRTVTPIIQNISVANGIAL 184 (319)
T ss_dssp EEECTTSCCEEEEEEEESSEEEEEE
T ss_pred EEEecccceeEEEeeccceeeeeee
Confidence 9999998889999999999999987
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.69 E-value=2.2e-16 Score=138.73 Aligned_cols=146 Identities=12% Similarity=0.061 Sum_probs=116.4
Q ss_pred eEEccCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 72 KLEFVDEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
+++..-+..=.|++.||+ +|++||+|+.+++|+|++++++..+.+ .....|.
T Consensus 10 ~~~~~~~~~LgEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~---------------------------~~~~~~~ 62 (295)
T d2ghsa1 10 RVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVH---------------------------ALPFMGS 62 (295)
T ss_dssp EEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE---------------------------ECSSCEE
T ss_pred EEEcCCCCeeeeCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEE---------------------------ECCCCcE
Confidence 444444444459999997 788999999999999999987633222 1123577
Q ss_pred eEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCC
Q 039124 151 GLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGEST 230 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~ 230 (259)
++++++ +|+|+||.. .||+++|+++++.+.++...++.+.+.+||+.+|++|+|||+++... +..+.
T Consensus 63 ~i~~~~-dg~l~va~~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~-----------~~~~~ 129 (295)
T d2ghsa1 63 ALAKIS-DSKQLIASD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK-----------AETGA 129 (295)
T ss_dssp EEEEEE-TTEEEEEET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT-----------CCTTC
T ss_pred EEEEec-CCCEEEEEe-CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEecccc-----------ccccc
Confidence 899998 499999864 69999999999988888777778889999999999999999997532 13567
Q ss_pred ceEEEEeCCCCcEEEecCCCCCcceeEEC
Q 039124 231 GRLLRYDPPTKSNSYCVRWLGFSKWSTII 259 (259)
Q Consensus 231 GrL~rydp~tg~~~vl~~~L~~pNGval~ 259 (259)
|.+||++. ++++.+..++.+|||+++.
T Consensus 130 g~l~~~~~--g~~~~~~~~~~~~Ng~~~s 156 (295)
T d2ghsa1 130 GSIYHVAK--GKVTKLFADISIPNSICFS 156 (295)
T ss_dssp EEEEEEET--TEEEEEEEEESSEEEEEEC
T ss_pred eeEeeecC--CcEEEEeeccCCcceeeec
Confidence 88999874 7899999999999999873
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.54 E-value=5.1e-14 Score=126.44 Aligned_cols=168 Identities=14% Similarity=0.037 Sum_probs=112.8
Q ss_pred cCCCeEEccCCCCCceeEEEcCCCCEEEEEc------------CCCeEEEEeCCCcc--EEEEEEeecCccccccccCcc
Q 039124 68 LVTGKLEFVDEVFGPESLEFDGLGRGPYTGL------------ADGRIVRWMGENVG--WETFAIVTSNWSEKLCARGVD 133 (259)
Q Consensus 68 L~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~------------~~G~I~ri~~~~~~--~~~fa~~~~~~~~~~~~g~~~ 133 (259)
+.+.+.+ ++...|||+|+.+++|..++++- ..|+|+.++..... ...... +.+.
T Consensus 24 ~~~C~~i-~g~~~G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~---------~~~~-- 91 (340)
T d1v04a_ 24 LPNCNLV-KGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEI---------IGNT-- 91 (340)
T ss_dssp CSSCEEC-TTCCSCCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEE---------ECSS--
T ss_pred CCCceEc-CCCCCCcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEe---------cCCC--
Confidence 3455544 56678999999999987555431 13778887764431 111111 1000
Q ss_pred ccccccccccCcCCCcceEEEeCC-CC--cEEEEeCC-Cc----eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc
Q 039124 134 STTAKQWKHEKWCGRPLGLRFNKD-TG--DLYIADAY-YG----LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS 205 (259)
Q Consensus 134 ~~~~~~~~~~~~~grPlGl~~d~~-~G--~L~VaD~~-~G----l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~ 205 (259)
+ ....-+|+||.+-.+ +| .|+|++.. .+ +++++.++.+. .++..+.+..+..||||++..+|.
T Consensus 92 ------~--~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l-~~~~~v~~~~~~~pNDv~~~~~g~ 162 (340)
T d1v04a_ 92 ------L--DISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSL-LHLKTIRHKLLPSVNDIVAVGPEH 162 (340)
T ss_dssp ------S--CGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEE-EEEEEECCTTCSSEEEEEEEETTE
T ss_pred ------C--CCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeE-EEEeecCCccccCccceEEecCCC
Confidence 0 112347999976321 35 57888763 22 78888877654 455567778899999999999999
Q ss_pred EEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 206 IFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 206 IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
+|||+............+.+.+.++|++++||+ ++.+++++++.|||||++
T Consensus 163 fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~--~~~~~~~~~l~~pNGI~~ 213 (340)
T d1v04a_ 163 FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINI 213 (340)
T ss_dssp EEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS--SCEEEEEEEESSEEEEEE
T ss_pred EEEecCccCcChhhhhhhHhhcCCceeEEEEcC--CceEEEcCCCCccceeEE
Confidence 999986543222223344556789999999997 578999999999999997
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.48 E-value=6.8e-13 Score=115.41 Aligned_cols=130 Identities=20% Similarity=0.135 Sum_probs=95.5
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
.||++|++++|++|+++..+++|+|+++++. .+.+ ....++|.|++|++ +|+
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-~~~~--------------------------~~~~~~~~gla~~~-dG~ 80 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIH--------------------------ATVEGKVSGLAFTS-NGD 80 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEE--------------------------EECSSEEEEEEECT-TSC
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC-EEEE--------------------------EcCCCCcceEEEcC-CCC
Confidence 5999999999999889999999999999876 3332 12346799999999 599
Q ss_pred EEEEeCCCc-eEEEEC--CCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEe
Q 039124 161 LYIADAYYG-LLVVGS--KGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYD 237 (259)
Q Consensus 161 L~VaD~~~G-l~~v~~--~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ryd 237 (259)
|||++...+ +.+++. ..+..+.+....+ ..++|+++++++|++|++|+.. ++++++|
T Consensus 81 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~n~i~~~~~g~~~v~~~~~-----------------~~i~~~~ 140 (302)
T d2p4oa1 81 LVATGWNADSIPVVSLVKSDGTVETLLTLPD---AIFLNGITPLSDTQYLTADSYR-----------------GAIWLID 140 (302)
T ss_dssp EEEEEECTTSCEEEEEECTTSCEEEEEECTT---CSCEEEEEESSSSEEEEEETTT-----------------TEEEEEE
T ss_pred eEEEecCCceEEEEEecccccceeeccccCC---ccccceeEEccCCCEEeecccc-----------------ccceeee
Confidence 999987665 555543 3444555655433 4579999999999999999753 4677777
Q ss_pred CCCCcEEEe-----------cCCCCCcceeEE
Q 039124 238 PPTKSNSYC-----------VRWLGFSKWSTI 258 (259)
Q Consensus 238 p~tg~~~vl-----------~~~L~~pNGval 258 (259)
+.++..++. ...+..+||+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~ 172 (302)
T d2p4oa1 141 VVQPSGSIWLEHPMLARSNSESVFPAANGLKR 172 (302)
T ss_dssp TTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE
T ss_pred ccCCcceeEecCCccceeeccCcccccccccc
Confidence 766554443 344567777653
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.48 E-value=7.2e-13 Score=112.96 Aligned_cols=139 Identities=14% Similarity=0.179 Sum_probs=106.0
Q ss_pred EEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceE
Q 039124 73 LEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGL 152 (259)
Q Consensus 73 ~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl 152 (259)
.+..+.+..|.++++|++|++|+++..+.++.+++..+..... ........|.||
T Consensus 91 ~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~p~~i 145 (260)
T d1rwia_ 91 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-------------------------LPFTGLNDPDGV 145 (260)
T ss_dssp ECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE-------------------------CCCCSCCSCCEE
T ss_pred eeeeeeeeecccccccccceeEeeccccccccccccccceeee-------------------------eeecccCCccee
Confidence 3334457899999999999988889889999999887652111 011235679999
Q ss_pred EEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCc
Q 039124 153 RFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTG 231 (259)
Q Consensus 153 ~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~G 231 (259)
++++ +|++||+|...+ |++++.++.....+. ...+..|++|++|++|+||++|... +
T Consensus 146 ~~~~-~g~~~v~~~~~~~i~~~d~~~~~~~~~~----~~~~~~p~gi~~d~~g~l~vsd~~~-----------------~ 203 (260)
T d1rwia_ 146 AVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLP----FTDITAPWGIAVDEAGTVYVTEHNT-----------------N 203 (260)
T ss_dssp EECT-TCCEEEEEGGGTEEEEECTTTCCEEECC----CSSCCSEEEEEECTTCCEEEEETTT-----------------T
T ss_pred eecC-CCCEeeeccccccccccccccceeeeee----ccccCCCccceeeeeeeeeeeecCC-----------------C
Confidence 9999 599999998776 899998876544332 2346789999999999999999753 5
Q ss_pred eEEEEeCCCCcEEEe-cCCCCCcceeEE
Q 039124 232 RLLRYDPPTKSNSYC-VRWLGFSKWSTI 258 (259)
Q Consensus 232 rL~rydp~tg~~~vl-~~~L~~pNGval 258 (259)
++++|+++++..+++ ..++..|.||++
T Consensus 204 ~i~~~~~~~~~~~~~~~~~~~~P~~i~~ 231 (260)
T d1rwia_ 204 QVVKLLAGSTTSTVLPFTGLNTPLAVAV 231 (260)
T ss_dssp EEEEECTTCSCCEECCCCSCCCEEEEEE
T ss_pred EEEEEeCCCCeEEEEccCCCCCeEEEEE
Confidence 899999986555555 357889999986
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.41 E-value=3.5e-12 Score=108.59 Aligned_cols=133 Identities=17% Similarity=0.268 Sum_probs=90.3
Q ss_pred CCCceeEEEcCCCCEEEEEc-CCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 79 VFGPESLEFDGLGRGPYTGL-ADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~-~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
-.+|+++|+|++|++|+++. .+++|.+++..+..... ........|.|+++++
T Consensus 13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~-------------------------~~~~~~~~p~gvav~~- 66 (260)
T d1rwia_ 13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-------------------------LPFNGLYQPQGLAVDG- 66 (260)
T ss_dssp CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEE-------------------------CCCCSCCSCCCEEECT-
T ss_pred cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEE-------------------------eccCCccCceEEEEcC-
Confidence 36999999999999777765 45889999876652111 0112356799999999
Q ss_pred CCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEe
Q 039124 158 TGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYD 237 (259)
Q Consensus 158 ~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ryd 237 (259)
+|+|||+|...+++++...+....... . ..+..|++++++++|+||++|+.. .++++++
T Consensus 67 ~g~i~v~d~~~~~i~~~~~~~~~~~~~--~--~~~~~p~~iavd~~g~i~v~d~~~-----------------~~~~~~~ 125 (260)
T d1rwia_ 67 AGTVYVTDFNNRVVTLAAGSNNQTVLP--F--DGLNYPEGLAVDTQGAVYVADRGN-----------------NRVVKLA 125 (260)
T ss_dssp TCCEEEEETTTEEEEECTTCSCCEECC--C--CSCCSEEEEEECTTCCEEEEEGGG-----------------TEEEEEC
T ss_pred CCCEEEeeeeeceeeeeeeccceeeee--e--eeeeecccccccccceeEeecccc-----------------ccccccc
Confidence 599999999999888876655433222 2 236789999999999999999653 2566666
Q ss_pred CCCCcEEEe-cCCCCCcceeEE
Q 039124 238 PPTKSNSYC-VRWLGFSKWSTI 258 (259)
Q Consensus 238 p~tg~~~vl-~~~L~~pNGval 258 (259)
+.++..... ..++..|+||++
T Consensus 126 ~~~~~~~~~~~~~~~~p~~i~~ 147 (260)
T d1rwia_ 126 AGSKTQTVLPFTGLNDPDGVAV 147 (260)
T ss_dssp TTCSSCEECCCCSCCSCCEEEE
T ss_pred cccceeeeeeecccCCcceeee
Confidence 654443332 345666666654
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.37 E-value=1.3e-11 Score=106.46 Aligned_cols=142 Identities=15% Similarity=0.105 Sum_probs=108.0
Q ss_pred CeEEccCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 71 GKLEFVDEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
.+.+...++..|+++|+|. .+++||++...++|.+++.++...+.. . ......|
T Consensus 70 ~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l-----------~--------------~~~l~~p 124 (263)
T d1npea_ 70 PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL-----------F--------------DTGLVNP 124 (263)
T ss_dssp CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-----------E--------------CSSCSSE
T ss_pred cEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEE-----------e--------------cccccCC
Confidence 4566666788999999997 566777888899999999887632211 0 1223579
Q ss_pred ceEEEeCCCCcEEEEeCCCc---eEEEECCCCeEEEeeecCCCCCccccccEEEcCC-CcEEEecCCCCCCcccceeeee
Q 039124 150 LGLRFNKDTGDLYIADAYYG---LLVVGSKGGLATPLATQAGGKPILFANDLDVHKN-GSIFFTDTSKRYNRVDHFFILL 225 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~G---l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~d-G~IyfTDss~~~~~~~~~~~~~ 225 (259)
.+|++|+..|.||+++...+ |++++.+|...+.++.. .+..|++|++|.. ++|||+|...
T Consensus 125 ~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~----~~~~P~glaiD~~~~~lYw~d~~~------------ 188 (263)
T d1npea_ 125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD----NLGLPNGLTFDAFSSQLCWVDAGT------------ 188 (263)
T ss_dssp EEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT----TCSCEEEEEEETTTTEEEEEETTT------------
T ss_pred cEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeee----cccccceEEEeecCcEEEEEeCCC------------
Confidence 99999987799999987653 99999998766666542 4668999999975 5699999753
Q ss_pred ccCCCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 226 EGESTGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 226 e~~~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
+++.++|.+.+..++++.++..|-||++
T Consensus 189 -----~~I~~~~~~g~~~~~v~~~~~~P~~lav 216 (263)
T d1npea_ 189 -----HRAECLNPAQPGRRKVLEGLQYPFAVTS 216 (263)
T ss_dssp -----TEEEEEETTEEEEEEEEECCCSEEEEEE
T ss_pred -----CEEEEEECCCCCeEEEECCCCCcEEEEE
Confidence 4788888876667778888888888875
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.33 E-value=1.2e-11 Score=108.78 Aligned_cols=135 Identities=13% Similarity=0.055 Sum_probs=94.1
Q ss_pred CCCceeEEEcCCCCEEEEEcC---------------CCeEEEEeCCCccEEEEEEeecCccccccccCcccccccccccc
Q 039124 79 VFGPESLEFDGLGRGPYTGLA---------------DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHE 143 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~---------------~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~ 143 (259)
+.+|.++++|++|++|+|+.. .|+|+++++++. .....
T Consensus 116 ~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~-~~~~~-------------------------- 168 (314)
T d1pjxa_ 116 MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ-MIQVD-------------------------- 168 (314)
T ss_dssp CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC-EEEEE--------------------------
T ss_pred cCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCc-eeEee--------------------------
Confidence 557999999999997777642 578999998875 22211
Q ss_pred CcCCCcceEEEeCCCC-----cEEEEeCCCc-eEEEECC-CCeEE--EeeecCCCCCccccccEEEcCCCcEEEecCCCC
Q 039124 144 KWCGRPLGLRFNKDTG-----DLYIADAYYG-LLVVGSK-GGLAT--PLATQAGGKPILFANDLDVHKNGSIFFTDTSKR 214 (259)
Q Consensus 144 ~~~grPlGl~~d~~~G-----~L~VaD~~~G-l~~v~~~-gg~~~--~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~ 214 (259)
.....|+||+++++ + .|||+|...+ |++++.+ .+... .+....++.....|+++++|++|+||+++..
T Consensus 169 ~~~~~pNGi~~~~d-~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~-- 245 (314)
T d1pjxa_ 169 TAFQFPNGIAVRHM-NDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-- 245 (314)
T ss_dssp EEESSEEEEEEEEC-TTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET--
T ss_pred CCcceeeeeEECCC-CCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC--
Confidence 11346999999884 4 4999998876 7777633 22222 1222344555567999999999999999854
Q ss_pred CCcccceeeeeccCCCceEEEEeCCCCcEEE-ecCCCCCcceeEE
Q 039124 215 YNRVDHFFILLEGESTGRLLRYDPPTKSNSY-CVRWLGFSKWSTI 258 (259)
Q Consensus 215 ~~~~~~~~~~~e~~~~GrL~rydp~tg~~~v-l~~~L~~pNGval 258 (259)
.|+|++|||++++... +......|.++||
T Consensus 246 ---------------~g~I~~~dp~~g~~~~~i~~p~~~~t~~af 275 (314)
T d1pjxa_ 246 ---------------SSHIEVFGPDGGQPKMRIRCPFEKPSNLHF 275 (314)
T ss_dssp ---------------TTEEEEECTTCBSCSEEEECSSSCEEEEEE
T ss_pred ---------------CCEEEEEeCCCCEEEEEEECCCCCEEEEEE
Confidence 3689999999776543 3333456667765
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=2e-10 Score=98.82 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=107.0
Q ss_pred EEccCCCCCceeEEEcC-CCCEEEEEcC-CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 73 LEFVDEVFGPESLEFDG-LGRGPYTGLA-DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 73 ~l~~~~l~gPE~ia~D~-~G~~~yt~~~-~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
.+....+..|.++++|+ .|.++|++.. .++|.|.+.++.....+ + ......|.
T Consensus 113 ~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l-----------~--------------~~~~~~p~ 167 (266)
T d1ijqa1 113 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-----------V--------------TENIQWPN 167 (266)
T ss_dssp EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE-----------E--------------CSSCSCEE
T ss_pred EEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecc-----------c--------------ccccceee
Confidence 44555688999999998 6677777654 46899999988643221 1 12246799
Q ss_pred eEEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCC
Q 039124 151 GLRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGES 229 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~ 229 (259)
||++|..++.||++|...+ |.+++.+|...+.+..... .+..|-+|+++ ++.||+||..
T Consensus 168 gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~--~~~~p~~lav~-~~~ly~td~~----------------- 227 (266)
T d1ijqa1 168 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK--RLAHPFSLAVF-EDKVFWTDII----------------- 227 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTT--TTSSEEEEEEE-TTEEEEEETT-----------------
T ss_pred EEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCC--cccccEEEEEE-CCEEEEEECC-----------------
Confidence 9999986678999999876 8889999877666665432 35578899999 6799999965
Q ss_pred CceEEEEeCCCCc-EEEecCCCCCcceeEE
Q 039124 230 TGRLLRYDPPTKS-NSYCVRWLGFSKWSTI 258 (259)
Q Consensus 230 ~GrL~rydp~tg~-~~vl~~~L~~pNGval 258 (259)
.++++|++..+|+ .+++..++..|.||.+
T Consensus 228 ~~~I~~~~~~~g~~~~~~~~~~~~p~~i~v 257 (266)
T d1ijqa1 228 NEAIFSANRLTGSDVNLLAENLLSPEDMVL 257 (266)
T ss_dssp TTEEEEEETTTCCCCEEEECSCSCCCCEEE
T ss_pred CCeEEEEECCCCcceEEEEcCCCCceEEEE
Confidence 3589999987764 5677889999999875
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.27 E-value=1.2e-10 Score=99.74 Aligned_cols=111 Identities=17% Similarity=0.213 Sum_probs=86.0
Q ss_pred EccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEE
Q 039124 74 EFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLR 153 (259)
Q Consensus 74 l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~ 153 (259)
+....+..|.++++|++|++++++...+++.++++++.....+. .......|.+++
T Consensus 108 ~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g------------------------~~~~~~~~~~i~ 163 (279)
T d1q7fa_ 108 FGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFG------------------------CSKHLEFPNGVV 163 (279)
T ss_dssp ECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEE------------------------CTTTCSSEEEEE
T ss_pred cCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeeccc------------------------ccccccccceee
Confidence 33456789999999999998999999999999999886322221 012346789999
Q ss_pred EeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 154 FNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 154 ~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
+++ +|++||+|...+ |.++++++.....+.. +| .+.+|.+|++|++|+||++|..
T Consensus 164 ~d~-~g~i~v~d~~~~~V~~~d~~G~~~~~~g~--~g-~~~~P~giavD~~G~i~Vad~~ 219 (279)
T d1q7fa_ 164 VND-KQEIFISDNRAHCVKVFNYEGQYLRQIGG--EG-ITNYPIGVGINSNGEILIADNH 219 (279)
T ss_dssp ECS-SSEEEEEEGGGTEEEEEETTCCEEEEESC--TT-TSCSEEEEEECTTCCEEEEECS
T ss_pred ecc-ceeEEeeeccccceeeeecCCceeeeecc--cc-cccCCcccccccCCeEEEEECC
Confidence 998 599999999876 7778988875555532 22 4778999999999999999975
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=2.1e-10 Score=98.61 Aligned_cols=143 Identities=15% Similarity=0.132 Sum_probs=104.2
Q ss_pred CCeEEccCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCC
Q 039124 70 TGKLEFVDEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGR 148 (259)
Q Consensus 70 ~~e~l~~~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gr 148 (259)
..+.+....+..|+++|+|. .+++||++...++|.+.+.++.....+ + .....+
T Consensus 67 ~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~-----------~--------------~~~~~~ 121 (266)
T d1ijqa1 67 SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-----------F--------------RENGSK 121 (266)
T ss_dssp -CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE-----------E--------------ECTTCC
T ss_pred ceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEE-----------E--------------cCCCCC
Confidence 34556666789999999997 667888888889999999887632221 1 122467
Q ss_pred cceEEEeCCCCcEEEEeCCC--ceEEEECCCCeEEEeeecCCCCCccccccEEEcCC-CcEEEecCCCCCCcccceeeee
Q 039124 149 PLGLRFNKDTGDLYIADAYY--GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKN-GSIFFTDTSKRYNRVDHFFILL 225 (259)
Q Consensus 149 PlGl~~d~~~G~L~VaD~~~--Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~d-G~IyfTDss~~~~~~~~~~~~~ 225 (259)
|.+|++|+..|.||++|... .|++.+.+|...+.++.+ .+..|++|++|+. ++|||+|...
T Consensus 122 P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~----~~~~p~gl~iD~~~~~lYw~d~~~------------ 185 (266)
T d1ijqa1 122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE----NIQWPNGITLDLLSGRLYWVDSKL------------ 185 (266)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS----SCSCEEEEEEETTTTEEEEEETTT------------
T ss_pred cceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccc----ccceeeEEEeeccccEEEEecCCc------------
Confidence 99999998679999999764 499999998877777642 3668999999985 5699999753
Q ss_pred ccCCCceEEEEeCCCCcEEEecC---CCCCcceeEE
Q 039124 226 EGESTGRLLRYDPPTKSNSYCVR---WLGFSKWSTI 258 (259)
Q Consensus 226 e~~~~GrL~rydp~tg~~~vl~~---~L~~pNGval 258 (259)
+++.++|.++...+++.. .+..|-||++
T Consensus 186 -----~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav 216 (266)
T d1ijqa1 186 -----HSISSIDVNGGNRKTILEDEKRLAHPFSLAV 216 (266)
T ss_dssp -----TEEEEEETTSCSCEEEEECTTTTSSEEEEEE
T ss_pred -----CEEEEEECCCCCEEEEEeCCCcccccEEEEE
Confidence 467788877545455532 3556666664
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=3.2e-10 Score=97.45 Aligned_cols=139 Identities=14% Similarity=0.115 Sum_probs=102.0
Q ss_pred eEEccCCCCCceeEEEcCC-CCEEEEEcC--CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCC
Q 039124 72 KLEFVDEVFGPESLEFDGL-GRGPYTGLA--DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGR 148 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~-G~~~yt~~~--~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gr 148 (259)
+.+....+..|.++++|+. |.+||+... .++|+|.+.++.....+ . ......
T Consensus 114 ~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i------------------------~-~~~~~~ 168 (263)
T d1npea_ 114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL------------------------A-QDNLGL 168 (263)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE------------------------E-CTTCSC
T ss_pred EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceee------------------------e-eecccc
Confidence 4566667899999999994 555556533 45799999887632221 0 123467
Q ss_pred cceEEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeecc
Q 039124 149 PLGLRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEG 227 (259)
Q Consensus 149 PlGl~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~ 227 (259)
|.||++|..++.||++|...+ |.+++.+|+..+.++.. +..|-+|+++ ++.||+||..+
T Consensus 169 P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~-----~~~P~~lav~-~~~lYwtd~~~-------------- 228 (263)
T d1npea_ 169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-----LQYPFAVTSY-GKNLYYTDWKT-------------- 228 (263)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-----CCSEEEEEEE-TTEEEEEETTT--------------
T ss_pred cceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECC-----CCCcEEEEEE-CCEEEEEECCC--------------
Confidence 999999976688999998876 88899998877766642 4468899998 68999999753
Q ss_pred CCCceEEEEeCCCCcEE-Eec-CCCCCcceeEE
Q 039124 228 ESTGRLLRYDPPTKSNS-YCV-RWLGFSKWSTI 258 (259)
Q Consensus 228 ~~~GrL~rydp~tg~~~-vl~-~~L~~pNGval 258 (259)
++++++|..+++.. ++. .+-..|-||++
T Consensus 229 ---~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v 258 (263)
T d1npea_ 229 ---NSVIAMDLAISKEMDTFHPHKQTRLYGITI 258 (263)
T ss_dssp ---TEEEEEETTTTEEEEEECCSSCCCCCCEEE
T ss_pred ---CEEEEEECCCCccceEECCCCCCCcceEEE
Confidence 48999999888754 343 45566778875
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.20 E-value=2.7e-10 Score=99.83 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=81.6
Q ss_pred EccCCCCCceeEEEcCCCCEEEEEcC----CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 74 EFVDEVFGPESLEFDGLGRGPYTGLA----DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 74 l~~~~l~gPE~ia~D~~G~~~yt~~~----~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
.......+|.+++++++|++|+++.. .+.|++++..+....... .......+|
T Consensus 76 ~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~-----------------------~~~~~~~~~ 132 (319)
T d2dg1a1 76 PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII-----------------------EDLSTAYCI 132 (319)
T ss_dssp EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE-----------------------CSSSSCCCE
T ss_pred EEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeec-----------------------cCCCcccCC
Confidence 33344568999999999997766643 467888888765332210 011234579
Q ss_pred ceEEEeCCCCcEEEEeCCC-------ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCC
Q 039124 150 LGLRFNKDTGDLYIADAYY-------GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSK 213 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~-------Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~ 213 (259)
+++++++ +|++||+|... ++++++++++.++.+.. .+..||++++++||+ +|++|+..
T Consensus 133 nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~-----~~~~pnGia~s~dg~~lyvad~~~ 198 (319)
T d2dg1a1 133 DDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-----NISVANGIALSTDEKVLWVTETTA 198 (319)
T ss_dssp EEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-----EESSEEEEEECTTSSEEEEEEGGG
T ss_pred cceeEEe-ccceeecccccccccCcceeEEEecccceeEEEee-----ccceeeeeeeccccceEEEecccC
Confidence 9999999 59999998653 38999999887676654 366899999999997 99999753
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.19 E-value=1.7e-10 Score=98.93 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=83.2
Q ss_pred CCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 77 DEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 77 ~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
..+..|.++++|++|++++++...++|++++.++....+|. ......+|.||++|+
T Consensus 154 ~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g------------------------~~g~~~~P~giavD~ 209 (279)
T d1q7fa_ 154 KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIG------------------------GEGITNYPIGVGINS 209 (279)
T ss_dssp TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEES------------------------CTTTSCSEEEEEECT
T ss_pred ccccccceeeeccceeEEeeeccccceeeeecCCceeeeec------------------------ccccccCCccccccc
Confidence 35789999999999998888888999999999886322221 123456899999999
Q ss_pred CCCcEEEEeCCCc--eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 157 DTGDLYIADAYYG--LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 157 ~~G~L~VaD~~~G--l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
+ |++||||.+.+ |.+++++|..++.+..... ...|.+|++++||+||++|..
T Consensus 210 ~-G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~---~~~p~~vav~~dG~l~V~~~n 263 (279)
T d1q7fa_ 210 N-GEILIADNHNNFNLTIFTQDGQLISALESKVK---HAQCFDVALMDDGSVVLASKD 263 (279)
T ss_dssp T-CCEEEEECSSSCEEEEECTTSCEEEEEEESSC---CSCEEEEEEETTTEEEEEETT
T ss_pred C-CeEEEEECCCCcEEEEECCCCCEEEEEeCCCC---CCCEeEEEEeCCCcEEEEeCC
Confidence 4 99999998653 6777888765566654332 347899999999999999854
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.03 E-value=3.6e-09 Score=91.25 Aligned_cols=144 Identities=10% Similarity=-0.063 Sum_probs=98.0
Q ss_pred CCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 78 EVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
....|.++++|++|++|+++..+++|++++..+.....+...... . . .........|.|+.++.
T Consensus 111 ~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~--~-----------~~~~~~~~~~ngi~~~~- 174 (302)
T d2p4oa1 111 DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPML--A--R-----------SNSESVFPAANGLKRFG- 174 (302)
T ss_dssp TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGG--S--C-----------SSTTCCSCSEEEEEEET-
T ss_pred CccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCcc--c--e-----------eeccCcccccccccccC-
Confidence 456789999999999877888899999999887633332221100 0 0 01123345688999985
Q ss_pred CCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEE
Q 039124 158 TGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRY 236 (259)
Q Consensus 158 ~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ry 236 (259)
+.+|+++...+ |++++.++.......... .....|+++++|+||+||+++.. .++|+||
T Consensus 175 -~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~pdgia~d~dG~l~va~~~-----------------~~~V~~i 234 (302)
T d2p4oa1 175 -NFLYVSNTEKMLLLRIPVDSTDKPGEPEIF--VEQTNIDDFAFDVEGNLYGATHI-----------------YNSVVRI 234 (302)
T ss_dssp -TEEEEEETTTTEEEEEEBCTTSCBCCCEEE--EESCCCSSEEEBTTCCEEEECBT-----------------TCCEEEE
T ss_pred -CceeeecCCCCeEEeccccccccccccccc--cCCCCCcceEECCCCCEEEEEcC-----------------CCcEEEE
Confidence 58999998876 788886543211000000 11346899999999999999854 3589999
Q ss_pred eCCCCcEEEec---CCCCCcceeEE
Q 039124 237 DPPTKSNSYCV---RWLGFSKWSTI 258 (259)
Q Consensus 237 dp~tg~~~vl~---~~L~~pNGval 258 (259)
+|+ |+.+.++ .++..|+.++|
T Consensus 235 ~p~-G~~~~~~~~~~~~~~pt~vaf 258 (302)
T d2p4oa1 235 APD-RSTTIIAQAEQGVIGSTAVAF 258 (302)
T ss_dssp CTT-CCEEEEECGGGTCTTEEEEEE
T ss_pred CCC-CCEEEEEecCCCCCCceEEEE
Confidence 998 6666554 47778888876
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.77 E-value=5.8e-08 Score=83.92 Aligned_cols=121 Identities=16% Similarity=0.063 Sum_probs=80.0
Q ss_pred CCCceeEEEcCCCCEEEEEcC------CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceE
Q 039124 79 VFGPESLEFDGLGRGPYTGLA------DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGL 152 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~------~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl 152 (259)
...|.++++|++|++|+++.. .|.++++..+ . .... ......|+|+
T Consensus 102 ~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g-~-~~~~--------------------------~~~~~~~Ng~ 153 (295)
T d2ghsa1 102 GNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG-K-VTKL--------------------------FADISIPNSI 153 (295)
T ss_dssp TEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT-E-EEEE--------------------------EEEESSEEEE
T ss_pred cccceeeEECCCCCEEEEeccccccccceeEeeecCC-c-EEEE--------------------------eeccCCccee
Confidence 346889999999997666542 4567777542 2 1111 1224568999
Q ss_pred EEeCCCCcEEEEeCCCc-eEEEECC--CC----eEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeee
Q 039124 153 RFNKDTGDLYIADAYYG-LLVVGSK--GG----LATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILL 225 (259)
Q Consensus 153 ~~d~~~G~L~VaD~~~G-l~~v~~~--gg----~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~ 225 (259)
+++++...+|++|...+ |++++.+ ++ +...++. ..+. ...|+++++|++|+||++...
T Consensus 154 ~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~-~~~~-~g~pdG~~vD~~GnlWva~~~------------- 218 (295)
T d2ghsa1 154 CFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID-STGI-KGGMDGSVCDAEGHIWNARWG------------- 218 (295)
T ss_dssp EECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE-CTTS-SSEEEEEEECTTSCEEEEEET-------------
T ss_pred eecCCCceEEEeecccceeeEeeecccccccccceEEEec-cCcc-cccccceEEcCCCCEEeeeeC-------------
Confidence 99986456999998776 7777543 22 2233332 2222 247999999999999998753
Q ss_pred ccCCCceEEEEeCCCCcEEEe
Q 039124 226 EGESTGRLLRYDPPTKSNSYC 246 (259)
Q Consensus 226 e~~~~GrL~rydp~tg~~~vl 246 (259)
.|+|+||||+.+.++.+
T Consensus 219 ----~g~V~~~dp~G~~~~~i 235 (295)
T d2ghsa1 219 ----EGAVDRYDTDGNHIARY 235 (295)
T ss_dssp ----TTEEEEECTTCCEEEEE
T ss_pred ----CCceEEecCCCcEeeEe
Confidence 36899999985444444
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.37 E-value=7.4e-06 Score=74.77 Aligned_cols=170 Identities=15% Similarity=0.104 Sum_probs=100.7
Q ss_pred CeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 71 GKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
+|++..+ |..|-+++|.++|++++|.-.+|+|++++.++.......... . .. ......+--+
T Consensus 19 ~~~ia~~-L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~----~-~~------------~~~~ge~GLL 80 (450)
T d1crua_ 19 KKVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVP----E-IV------------NDADGQNGLL 80 (450)
T ss_dssp EEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECT----T-CC------------CCTTSSCSEE
T ss_pred EEEEECC-CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCC----c-cc------------cccCCCCcee
Confidence 4666665 999999999999996666656899999987665433322110 0 00 0112223457
Q ss_pred eEEEeCC---CCcEEEEeCC---------C-c---eEE--EECCCCe---EEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 151 GLRFNKD---TGDLYIADAY---------Y-G---LLV--VGSKGGL---ATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 151 Gl~~d~~---~G~L~VaD~~---------~-G---l~~--v~~~gg~---~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
||+|+++ ++.+|++-.+ . . +.+ .+..... .+.+........-++-..|++++||.+|||
T Consensus 81 gia~~Pdf~~n~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs 160 (450)
T d1crua_ 81 GFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYT 160 (450)
T ss_dssp EEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEE
T ss_pred eEEeCCCCccCCEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEE
Confidence 9999973 5889986321 0 1 222 2333222 223333333344567889999999999998
Q ss_pred cCCCCCCcc--------cce-------eeeeccCCCceEEEEeCCCCc-----------EEEecCCCCCcceeEE
Q 039124 210 DTSKRYNRV--------DHF-------FILLEGESTGRLLRYDPPTKS-----------NSYCVRWLGFSKWSTI 258 (259)
Q Consensus 210 Dss~~~~~~--------~~~-------~~~~e~~~~GrL~rydp~tg~-----------~~vl~~~L~~pNGval 258 (259)
-........ ... ...-.....|.++|++++.+. .++.+.|+.-|-|++|
T Consensus 161 ~Gd~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~ 235 (450)
T d1crua_ 161 IGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAF 235 (450)
T ss_dssp ECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEE
T ss_pred ecCCCcccccccccccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceee
Confidence 654321100 000 000012456999999987332 2677888888888876
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.12 E-value=5.3e-06 Score=69.12 Aligned_cols=103 Identities=11% Similarity=-0.029 Sum_probs=72.4
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC-cEE
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG-DLY 162 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G-~L~ 162 (259)
++|+.++|+.++++..++.|..|+.+...... .+ . .+....|.+++|.++ | .+|
T Consensus 1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~-----------t~------------~-~~~~~~p~~l~~spD-G~~l~ 55 (346)
T d1jmxb_ 1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYK-----------SC------------V-MPDKFGPGTAMMAPD-NRTAY 55 (346)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEE-----------EE------------E-CSSCCSSCEEEECTT-SSEEE
T ss_pred CccCCCCCcEEEEEcCCCEEEEEECCCCCEEE-----------EE------------E-cCCCCCcceEEECCC-CCEEE
Confidence 45788889988999999999999998763211 01 1 122356899999995 6 568
Q ss_pred EEeCCCc-eEEEECCCCeEEEeee--cCCCCCccccccEEEcCCCc-EEEecC
Q 039124 163 IADAYYG-LLVVGSKGGLATPLAT--QAGGKPILFANDLDVHKNGS-IFFTDT 211 (259)
Q Consensus 163 VaD~~~G-l~~v~~~gg~~~~l~~--~~~g~pl~~~Ndl~vd~dG~-IyfTDs 211 (259)
|++...+ |..+|.++++...... .........|.++++++||+ +|+++.
T Consensus 56 v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~ 108 (346)
T d1jmxb_ 56 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN 108 (346)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred EEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEec
Confidence 9987766 8889999885432221 12223345789999999997 887764
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.04 E-value=7.2e-05 Score=61.65 Aligned_cols=136 Identities=10% Similarity=-0.007 Sum_probs=83.0
Q ss_pred EEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc-EEEEeCCCc-e
Q 039124 93 GPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD-LYIADAYYG-L 170 (259)
Q Consensus 93 ~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~-L~VaD~~~G-l 170 (259)
.++|+..+++|..|+........ . +........|.+++|.++ |+ |||+....| |
T Consensus 3 ~~vt~~~d~~v~v~D~~s~~~~~-~----------------------i~~~~~~~~~~~i~~spD-g~~l~v~~~~~~~v 58 (337)
T d1pbyb_ 3 YILAPARPDKLVVIDTEKMAVDK-V----------------------ITIADAGPTPMVPMVAPG-GRIAYATVNKSESL 58 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEE-E----------------------EECTTCTTCCCCEEECTT-SSEEEEEETTTTEE
T ss_pred EEEEEcCCCEEEEEECCCCeEEE-E----------------------EECCCCCCCccEEEECCC-CCEEEEEECCCCeE
Confidence 46788889999999987652111 0 112234567999999995 75 678876665 8
Q ss_pred EEEECCCCeEEEeeec-CCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEEecC
Q 039124 171 LVVGSKGGLATPLATQ-AGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVR 248 (259)
Q Consensus 171 ~~v~~~gg~~~~l~~~-~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~ 248 (259)
..+|.++++...-... ........++++++++||+ +|++....... ........+++..+|..+++......
T Consensus 59 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~------~~~~~~~~~~~~~~d~~~~~~~~~~~ 132 (337)
T d1pbyb_ 59 VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLE------LTHFEVQPTRVALYDAETLSRRKAFE 132 (337)
T ss_dssp EEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEEC------SSCEEECCCEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcce------eeeccccccceeeccccCCeEEEecc
Confidence 8889998864332221 2223456789999999997 77665432100 00111233566667777666554444
Q ss_pred CCCCcceeEE
Q 039124 249 WLGFSKWSTI 258 (259)
Q Consensus 249 ~L~~pNGval 258 (259)
.-..++++++
T Consensus 133 ~~~~~~~~~~ 142 (337)
T d1pbyb_ 133 APRQITMLAW 142 (337)
T ss_dssp CCSSCCCEEE
T ss_pred ccCCceEEEE
Confidence 4444555543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=97.99 E-value=0.00018 Score=58.39 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=78.8
Q ss_pred CCCCceeEEEcCCCCEEEEEcCCCe-EEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 78 EVFGPESLEFDGLGRGPYTGLADGR-IVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~~~G~-I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
...+|..+++.++++.+|+...+.. +..+......... .......|.+++++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~ 209 (301)
T d1l0qa2 156 VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID--------------------------TVKVEAAPSGIAVNP 209 (301)
T ss_dssp CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE--------------------------EEECSSEEEEEEECT
T ss_pred cCCCceEEEeeccccceeeecccccccccccccceeeee--------------------------cccccCCcceeeccc
Confidence 3567999999998887888766544 4444444331110 012235688999998
Q ss_pred CCCcEEEEeCC--Cc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCce
Q 039124 157 DTGDLYIADAY--YG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGR 232 (259)
Q Consensus 157 ~~G~L~VaD~~--~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~Gr 232 (259)
+...+|++... .+ |..+|..+++...... . + ..|.++++++||+ ||++.+. .|+
T Consensus 210 ~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~-~-~---~~~~~va~spdg~~l~va~~~-----------------~~~ 267 (301)
T d1l0qa2 210 EGTKAYVTNVDKYFNTVSMIDTGTNKITARIP-V-G---PDPAGIAVTPDGKKVYVALSF-----------------CNT 267 (301)
T ss_dssp TSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-C-C---SSEEEEEECTTSSEEEEEETT-----------------TTE
T ss_pred cccccccccccceeeeeeeeecCCCeEEEEEc-C-C---CCEEEEEEeCCCCEEEEEECC-----------------CCe
Confidence 64566776543 33 7888998875432221 1 1 2588999999997 8998763 357
Q ss_pred EEEEeCCCCcEE
Q 039124 233 LLRYDPPTKSNS 244 (259)
Q Consensus 233 L~rydp~tg~~~ 244 (259)
|..+|.+|++..
T Consensus 268 i~v~D~~t~~~~ 279 (301)
T d1l0qa2 268 VSVIDTATNTIT 279 (301)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCeEE
Confidence 888999888643
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=0.00075 Score=55.46 Aligned_cols=145 Identities=11% Similarity=0.065 Sum_probs=85.5
Q ss_pred CCCCceeEEEcCCCCEEEEEcC-CCe--EEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 78 EVFGPESLEFDGLGRGPYTGLA-DGR--IVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~~-~G~--I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
....|..+++++++..+|.... .+. ++.+............... . .........|.++++
T Consensus 175 ~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~------------~~~~~~~~~~~~~~~ 237 (333)
T d1ri6a_ 175 EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDM-----M------------PENFSDTRWAADIHI 237 (333)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC-----S------------CTTCCSCCCEEEEEE
T ss_pred cCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeee-----e------------ecCCCccccceeEEE
Confidence 3577899999998887776543 444 3343333322211111000 0 011233456788999
Q ss_pred eCCCCcEEEEeCCCc---eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCC
Q 039124 155 NKDTGDLYIADAYYG---LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGEST 230 (259)
Q Consensus 155 d~~~G~L~VaD~~~G---l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~ 230 (259)
.+++..+|++....+ ++.++.+++..+.......+ ..|.+++++|||+ +|+++... .+
T Consensus 238 s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~a~spDGk~l~va~~~~---------------~~ 299 (333)
T d1ri6a_ 238 TPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE---TQPRGFNVDHSGKYLIAAGQKS---------------HH 299 (333)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS---SSCCCEEECTTSSEEEEECTTT---------------CE
T ss_pred ecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCC---CCeeEEEEeCCCCEEEEEECCC---------------Ce
Confidence 985334666666554 56667776654433322111 3588999999998 78887532 23
Q ss_pred ceEEEEeCCCCcEEEec---CCCCCcceeEE
Q 039124 231 GRLLRYDPPTKSNSYCV---RWLGFSKWSTI 258 (259)
Q Consensus 231 GrL~rydp~tg~~~vl~---~~L~~pNGval 258 (259)
-++|++|.+||+.+.+. -+- .|++|++
T Consensus 300 v~v~~id~~tG~l~~~~~~~~g~-~p~~v~~ 329 (333)
T d1ri6a_ 300 ISVYEIVGEQGLLHEKGRYAVGQ-GPMWVVV 329 (333)
T ss_dssp EEEEEEETTTTEEEEEEEEECSS-SCCEEEE
T ss_pred EEEEEEECCCCcEEEEEeccCCC-CCcEEEE
Confidence 47889999999876542 222 4888775
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=97.84 E-value=0.00051 Score=55.53 Aligned_cols=101 Identities=12% Similarity=0.128 Sum_probs=67.1
Q ss_pred CCceeEEEcCCCCEEE-EEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 80 FGPESLEFDGLGRGPY-TGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~y-t~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
..|.+++++++|+.+| ++..+++|..|+........ .......|.++++++++
T Consensus 32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~--------------------------~~~~~~~~~~~~~~~~~ 85 (301)
T d1l0qa2 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA--------------------------TVPAGSSPQGVAVSPDG 85 (301)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE--------------------------EEECSSSEEEEEECTTS
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceee--------------------------eeecccccccccccccc
Confidence 5799999999999776 55678999999987652111 01123468999999963
Q ss_pred CcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecC
Q 039124 159 GDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDT 211 (259)
Q Consensus 159 G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDs 211 (259)
..++++....+ +...+..+++....... ...++.+++++||+ ++++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~dg~~~~~~~~ 135 (301)
T d1l0qa2 86 KQVYVTNMASSTLSVIDTTSNTVAGTVKT-----GKSPLGLALSPDGKKLYVTNN 135 (301)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEET
T ss_pred ccccccccccceeeecccccceeeeeccc-----cccceEEEeecCCCeeeeeec
Confidence 34666665554 55667777753333322 23578899999998 455544
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.64 E-value=0.0021 Score=53.06 Aligned_cols=103 Identities=14% Similarity=0.203 Sum_probs=66.8
Q ss_pred CCCCCceeEEEcCCCCEEE-EEcCCC-eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 77 DEVFGPESLEFDGLGRGPY-TGLADG-RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 77 ~~l~gPE~ia~D~~G~~~y-t~~~~G-~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
+.-....+++|.++|+.++ ++..+| .|+.|+.+++.... .....+....++|
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~--------------------------~~~~~~~v~~~~~ 93 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK--------------------------FEENLGNVFAMGV 93 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE--------------------------CCCCCCSEEEEEE
T ss_pred cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE--------------------------eeCCCceEEeeee
Confidence 4445678999999998665 455555 46677776653221 1223455678999
Q ss_pred eCCCCcEEEEe-CCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEec
Q 039124 155 NKDTGDLYIAD-AYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTD 210 (259)
Q Consensus 155 d~~~G~L~VaD-~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTD 210 (259)
.++ |+.+++- ....++.++.+++....+..... ....++++.+||+ |.++.
T Consensus 94 spd-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~spdg~~la~~~ 146 (360)
T d1k32a3 94 DRN-GKFAVVANDRFEIMTVDLETGKPTVIERSRE----AMITDFTISDNSRFIAYGF 146 (360)
T ss_dssp CTT-SSEEEEEETTSEEEEEETTTCCEEEEEECSS----SCCCCEEECTTSCEEEEEE
T ss_pred ccc-ccccceeccccccccccccccceeeeeeccc----ccccchhhccceeeeeeec
Confidence 995 7666544 44458888998887655543322 3567899999998 44443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=0.00072 Score=55.60 Aligned_cols=108 Identities=12% Similarity=0.123 Sum_probs=64.9
Q ss_pred CCceeEEEcCCCCEEEEEcC-CCeEEEEeCCCcc-EEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 80 FGPESLEFDGLGRGPYTGLA-DGRIVRWMGENVG-WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~-~G~I~ri~~~~~~-~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
..|.+++|.++|+.+|++.. ++.|..|+.+... ..++. ........|.+++++++
T Consensus 37 ~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~-----------------------~~~~~~~~p~~l~~spD 93 (333)
T d1ri6a_ 37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA-----------------------AESALPGSLTHISTDHQ 93 (333)
T ss_dssp SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-----------------------EEEECSSCCSEEEECTT
T ss_pred CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEe-----------------------eecccCCCceEEEEcCC
Confidence 56889999999998887665 7887766543221 11110 01123456899999996
Q ss_pred CCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCC
Q 039124 158 TGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTS 212 (259)
Q Consensus 158 ~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss 212 (259)
+..||+++...+ +..++.+............+ ...+.++++++||+ +|.++..
T Consensus 94 g~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~v~~s~d~~~~~~~~~~ 148 (333)
T d1ri6a_ 94 GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG--LDGCHSANISPDNRTLWVPALK 148 (333)
T ss_dssp SSEEEEEETTTTEEEEEEEETTEEEEEEEEECC--CTTBCCCEECTTSSEEEEEEGG
T ss_pred CCEEeecccCCCceeeeccccccceecccccCC--CccceEEEeeecceeeeccccc
Confidence 334777876554 44444444433333322222 23578999999998 5666543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.49 E-value=0.0034 Score=54.34 Aligned_cols=113 Identities=12% Similarity=0.050 Sum_probs=64.6
Q ss_pred CCceeEEEcCCCCEEEE-EcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 80 FGPESLEFDGLGRGPYT-GLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt-~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
.+|.+++++++|+.+|+ +....+|+.++.+.......... .........|.+++|+++.
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~--------------------~~~~~~g~gPr~i~f~pdg 204 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS--------------------VDAPDPGDHPRWVAMHPTG 204 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE--------------------EECSSTTCCEEEEEECTTS
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccc--------------------eeecCCCCceEEEEECCCC
Confidence 46889999999996665 45567887765332211111100 0111234579999999953
Q ss_pred CcEEEEeCCCc-eEEEECC--CCeE-EEeee--c----------CCCCCccccccEEEcCCCc-EEEecCC
Q 039124 159 GDLYIADAYYG-LLVVGSK--GGLA-TPLAT--Q----------AGGKPILFANDLDVHKNGS-IFFTDTS 212 (259)
Q Consensus 159 G~L~VaD~~~G-l~~v~~~--gg~~-~~l~~--~----------~~g~pl~~~Ndl~vd~dG~-IyfTDss 212 (259)
..+||+....+ |..++.+ +... ..... . ........+.++.+++||+ +|++...
T Consensus 205 ~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~ 275 (365)
T d1jofa_ 205 NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred ceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence 34678776554 5444433 3221 11111 0 1112344678999999998 8888643
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.41 E-value=0.0076 Score=48.82 Aligned_cols=108 Identities=13% Similarity=-0.033 Sum_probs=67.2
Q ss_pred CCCCceeEEEcCCCCEEEE-EcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 78 EVFGPESLEFDGLGRGPYT-GLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt-~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
....|.+++++++|+.+|+ +..+|.|..|+........ ... +. ........+.++++.+
T Consensus 32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~-~~~--------~~-----------~~~~~~~~~~~v~~s~ 91 (337)
T d1pbyb_ 32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG-RID--------LS-----------TPEERVKSLFGAALSP 91 (337)
T ss_dssp CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE-EEE--------CC-----------BTTEEEECTTCEEECT
T ss_pred CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEE-EEe--------cC-----------CCcccccceeeEEEcC
Confidence 3467899999999997775 5778999999987653221 111 00 0112234578999999
Q ss_pred CCCcEEEEeCC------------CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEec
Q 039124 157 DTGDLYIADAY------------YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTD 210 (259)
Q Consensus 157 ~~G~L~VaD~~------------~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTD 210 (259)
+...+|++... ..+..+|..+++....... ...++++++++||+ +|.++
T Consensus 92 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~ 153 (337)
T d1pbyb_ 92 DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----PRQITMLAWARDGSKLYGLG 153 (337)
T ss_dssp TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----CSSCCCEEECTTSSCEEEES
T ss_pred CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-----cCCceEEEEcCCCCEEEEEc
Confidence 64456666421 2245567776653332221 13578999999997 66654
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.38 E-value=0.00039 Score=60.74 Aligned_cols=104 Identities=14% Similarity=0.102 Sum_probs=66.9
Q ss_pred cCCCCCceeEEEcCCCCEEEEEc-----------------CCCeEEEEeCCCccEEEEEEeecCccccccccCccccccc
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGL-----------------ADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAK 138 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~-----------------~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~ 138 (259)
...+..|.++++..+|..|+|.. ..|.|++++++.. .. +
T Consensus 146 ~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~--~~-----------~----------- 201 (340)
T d1v04a_ 146 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV--RV-----------V----------- 201 (340)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE--EE-----------E-----------
T ss_pred CccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce--EE-----------E-----------
Confidence 34578899999999998777742 2456677765432 11 0
Q ss_pred cccccCcCCCcceEEEeCCCCcEEEEeCCCc-eEEEECCC-CeEEEee-ecCCCCCccccccEEEcC-CCcEEEecC
Q 039124 139 QWKHEKWCGRPLGLRFNKDTGDLYIADAYYG-LLVVGSKG-GLATPLA-TQAGGKPILFANDLDVHK-NGSIFFTDT 211 (259)
Q Consensus 139 ~~~~~~~~grPlGl~~d~~~G~L~VaD~~~G-l~~v~~~g-g~~~~l~-~~~~g~pl~~~Ndl~vd~-dG~IyfTDs 211 (259)
......|+||+++++...||||+...+ |.+++.++ +..+... ..++ ..|+.+.+|+ +|.+|++-.
T Consensus 202 ----~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~----~~pDNi~~d~~~g~lwva~~ 270 (340)
T d1v04a_ 202 ----AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFD----TLVDNISVDPVTGDLWVGCH 270 (340)
T ss_dssp ----EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS----SEEEEEEECTTTCCEEEEEE
T ss_pred ----cCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCC----CCCCccEEecCCCEEEEEEC
Confidence 112456999999996457999998765 55554332 2222221 1233 3699999996 788999853
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.06 E-value=0.0068 Score=52.34 Aligned_cols=127 Identities=13% Similarity=0.085 Sum_probs=68.3
Q ss_pred CCCceeEEEcCCCCEEEEEc-CCCeEEEEeCCCccEE-EEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 79 VFGPESLEFDGLGRGPYTGL-ADGRIVRWMGENVGWE-TFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~-~~G~I~ri~~~~~~~~-~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
-.+|..++++++|+.+|+.. .+++|..++.+..... ........ .-.....+ ...........|..+++++
T Consensus 192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~i~~sp 264 (365)
T d1jofa_ 192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP----LIPPGIPD---RDPETGKGLYRADVCALTF 264 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE----SSCTTCCC---BCTTTSSBSEEEEEEEECT
T ss_pred CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeec----cccccccc---cccccccccCCccceEECC
Confidence 47999999999999888765 4677776665433211 11111000 00000000 0001112233567899999
Q ss_pred CCCcEEEEeCCC-----c---eEEEECCCCeEEEee-ecCCCCCccccccEEEcC-CCc-EEEecCCC
Q 039124 157 DTGDLYIADAYY-----G---LLVVGSKGGLATPLA-TQAGGKPILFANDLDVHK-NGS-IFFTDTSK 213 (259)
Q Consensus 157 ~~G~L~VaD~~~-----G---l~~v~~~gg~~~~l~-~~~~g~pl~~~Ndl~vd~-dG~-IyfTDss~ 213 (259)
++..||++.... + .++++..+...+... .... .....|+++++++ +|+ +|+++..+
T Consensus 265 dG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~G~~p~~i~~~p~~G~~l~va~~~s 331 (365)
T d1jofa_ 265 SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP-TSGGHSNAVSPCPWSDEWMAITDDQE 331 (365)
T ss_dssp TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS-SCCTTCCCEEECTTCTTEEEEECSSS
T ss_pred CCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE-cCCCCccEEEecCCCCCEEEEEeCCC
Confidence 633678875421 1 356666554322211 1111 1235799999997 788 99998653
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.95 E-value=0.0068 Score=54.42 Aligned_cols=21 Identities=10% Similarity=0.183 Sum_probs=16.2
Q ss_pred cccccEEEcCCCc-EEEecCCC
Q 039124 193 LFANDLDVHKNGS-IFFTDTSK 213 (259)
Q Consensus 193 ~~~Ndl~vd~dG~-IyfTDss~ 213 (259)
.++-||++.|||. +|++|...
T Consensus 405 ~R~rdv~~gpDGs~lyv~~d~~ 426 (450)
T d1crua_ 405 NRYRDVIASPDGNVLYVLTDTA 426 (450)
T ss_dssp SCEEEEEECTTSSCEEEEECSS
T ss_pred CCceEEEECCCCCEEEEEECCC
Confidence 3567999999997 68887654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=96.93 E-value=0.013 Score=47.45 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=44.8
Q ss_pred CCCceeEEEcCCCCEEEEE-cCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 79 VFGPESLEFDGLGRGPYTG-LADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~-~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
-.+|.+++|.++|+.+|+. ..++.|..|+.+... ......... ........|.+++|.++
T Consensus 39 ~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~-~~~~~~~~~------------------~~~~~~~~~~~v~~s~D 99 (346)
T d1jmxb_ 39 KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK-NTFHANLSS------------------VPGEVGRSMYSFAISPD 99 (346)
T ss_dssp CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEESCC------------------STTEEEECSSCEEECTT
T ss_pred CCCcceEEECCCCCEEEEEECCCCcEEEEeCccCe-eeeeecccc------------------cccccCCceEEEEEecC
Confidence 4689999999999977765 578999999987652 211111000 00122345889999996
Q ss_pred CCcEEEEeC
Q 039124 158 TGDLYIADA 166 (259)
Q Consensus 158 ~G~L~VaD~ 166 (259)
+..+||++.
T Consensus 100 G~~l~v~~~ 108 (346)
T d1jmxb_ 100 GKEVYATVN 108 (346)
T ss_dssp SSEEEEEEE
T ss_pred CCEEEEEec
Confidence 445777753
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=96.88 E-value=0.011 Score=51.94 Aligned_cols=106 Identities=7% Similarity=-0.046 Sum_probs=63.8
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe----
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN---- 155 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d---- 155 (259)
..|.+++|.++|+.+|+...+|.|..|+......... .....+..|.|+++.
T Consensus 62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~------------------------~~i~~~~~~~~~~~s~~~S 117 (432)
T d1qksa2 62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV------------------------AEIKIGSEARSIETSKMEG 117 (432)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE------------------------EEEECCSEEEEEEECCSTT
T ss_pred CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE------------------------EEEecCCCCCCeEEecccC
Confidence 5799999999999999998999999998754321100 001223456666554
Q ss_pred CCCCc-EEEEeCCCc-eEEEECCCCeEEEeeec----CCC---CCccccccEEEcCCCc-EEEec
Q 039124 156 KDTGD-LYIADAYYG-LLVVGSKGGLATPLATQ----AGG---KPILFANDLDVHKNGS-IFFTD 210 (259)
Q Consensus 156 ~~~G~-L~VaD~~~G-l~~v~~~gg~~~~l~~~----~~g---~pl~~~Ndl~vd~dG~-IyfTD 210 (259)
+| |+ |||+....+ +..+|.++++....... ... .+-.....+..+++|. +|++.
T Consensus 118 pD-G~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~ 181 (432)
T d1qksa2 118 WE-DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181 (432)
T ss_dssp CT-TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred CC-CCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEE
Confidence 44 65 677665444 77779888764433221 111 1222344566677775 44443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.54 E-value=0.022 Score=47.99 Aligned_cols=90 Identities=12% Similarity=0.026 Sum_probs=61.8
Q ss_pred CcceEEEeCCCCcEEEEeCCC---------ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc--EEEecCCCCCC
Q 039124 148 RPLGLRFNKDTGDLYIADAYY---------GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS--IFFTDTSKRYN 216 (259)
Q Consensus 148 rPlGl~~d~~~G~L~VaD~~~---------Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~--IyfTDss~~~~ 216 (259)
.+..+++.++.+.+||+.... .+..+|.++++.. .. ++. -..++++++++||+ +|++...
T Consensus 265 g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~--~~-~~~--~~~~~~~a~spDG~~~ly~s~~~---- 335 (368)
T d1mdah_ 265 GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS--GP-ISN--GHDSDAIIAAQDGASDNYANSAG---- 335 (368)
T ss_dssp SSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE--EC-CEE--EEEECEEEECCSSSCEEEEEETT----
T ss_pred CceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEe--EE-ecC--CCceeEEEECCCCCEEEEEEeCC----
Confidence 345688888656778864221 2778899888522 21 111 13689999999996 7888753
Q ss_pred cccceeeeeccCCCceEEEEeCCCCcEEEecCCCCCcceeEEC
Q 039124 217 RVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWLGFSKWSTII 259 (259)
Q Consensus 217 ~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L~~pNGval~ 259 (259)
.+.|..||..||+..--++-=..|++|++.
T Consensus 336 -------------~~~v~v~D~~tgk~~~~i~~g~~P~~l~~~ 365 (368)
T d1mdah_ 336 -------------TEVLDIYDAASDQDQSSVELDKGPESLSVQ 365 (368)
T ss_dssp -------------TTEEEEEESSSCEEEEECCCCSCCCEEECC
T ss_pred -------------CCeEEEEECCCCCEEEEEECCCCCCEEEEe
Confidence 357999999999876655544569998863
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.47 E-value=0.017 Score=47.14 Aligned_cols=90 Identities=16% Similarity=0.021 Sum_probs=57.6
Q ss_pred EcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEE-EE
Q 039124 87 FDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLY-IA 164 (259)
Q Consensus 87 ~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~-Va 164 (259)
|.| +|+ +++...+|+|+.++.++..... ....++...++|.++ |+.+ ++
T Consensus 10 fSP~dG~-~~a~~~~g~v~v~d~~~~~~~~---------------------------~~~~~~v~~~~~spD-g~~l~~~ 60 (360)
T d1k32a3 10 FSPLDGD-LIAFVSRGQAFIQDVSGTYVLK---------------------------VPEPLRIRYVRRGGD-TKVAFIH 60 (360)
T ss_dssp EEECGGG-CEEEEETTEEEEECTTSSBEEE---------------------------CSCCSCEEEEEECSS-SEEEEEE
T ss_pred ccCCCCC-EEEEEECCeEEEEECCCCcEEE---------------------------ccCCCCEEEEEECCC-CCEEEEE
Confidence 556 787 4455567899999887653211 112346679999995 7654 44
Q ss_pred eCCCc--eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 165 DAYYG--LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 165 D~~~G--l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
-...| |+..+.++++.+.+... ....+.+++++||+..++-
T Consensus 61 ~~~~g~~v~v~d~~~~~~~~~~~~-----~~~v~~~~~spdg~~l~~~ 103 (360)
T d1k32a3 61 GTREGDFLGIYDYRTGKAEKFEEN-----LGNVFAMGVDRNGKFAVVA 103 (360)
T ss_dssp EETTEEEEEEEETTTCCEEECCCC-----CCSEEEEEECTTSSEEEEE
T ss_pred EcCCCCEEEEEECCCCcEEEeeCC-----CceEEeeeeccccccccee
Confidence 44444 67778888876655321 2246789999999854443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=96.39 E-value=0.16 Score=41.66 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=46.6
Q ss_pred eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc--EEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEEec
Q 039124 170 LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS--IFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCV 247 (259)
Q Consensus 170 l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~--IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~ 247 (259)
+..+|..+++..... ... ..++++++++||+ +|++... .|.|..||..||+...-+
T Consensus 300 v~~~d~~t~~~~~~~-~~~----~~~~~~a~spDG~~~l~vt~~~-----------------d~~v~v~D~~tg~~~~~~ 357 (373)
T d2madh_ 300 VTSVTGLVGQTSSQI-SLG----HDVDAISVAQDGGPDLYALSAG-----------------TEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEECCCCcEEEEe-cCC----CCeeEEEECCCCCEEEEEEeCC-----------------CCeEEEEECCCCCEEEEE
Confidence 666676666422211 111 3578999999998 6777543 357999999999887777
Q ss_pred CCC-CCcceeEE
Q 039124 248 RWL-GFSKWSTI 258 (259)
Q Consensus 248 ~~L-~~pNGval 258 (259)
++. ..|++|++
T Consensus 358 ~~~g~~P~~l~~ 369 (373)
T d2madh_ 358 VELGSGPQVLSV 369 (373)
T ss_pred CCCCCCCcEEEE
Confidence 766 68998886
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.32 E-value=0.01 Score=51.49 Aligned_cols=90 Identities=11% Similarity=-0.082 Sum_probs=54.0
Q ss_pred EEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc-EEEEeCCCceEEE
Q 039124 95 YTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD-LYIADAYYGLLVV 173 (259)
Q Consensus 95 yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~-L~VaD~~~Gl~~v 173 (259)
.+...+|+|..|+........ . + .....|.+++|.++ |+ ||++.....+..+
T Consensus 36 V~~~~dg~v~vwD~~t~~~~~-~----------------------l---~~g~~~~~vafSPD-Gk~l~~~~~d~~v~vw 88 (426)
T d1hzua2 36 VTLRDAGQIALVDGDSKKIVK-V----------------------I---DTGYAVHISRMSAS-GRYLLVIGRDARIDMI 88 (426)
T ss_dssp EEETTTTEEEEEETTTCSEEE-E----------------------E---ECCSSEEEEEECTT-SCEEEEEETTSEEEEE
T ss_pred EEEcCCCEEEEEECCCCcEEE-E----------------------E---eCCCCeeEEEECCC-CCEEEEEeCCCCEEEE
Confidence 445678999999987653211 0 1 12346899999996 65 5677665568888
Q ss_pred ECCCCeEEEeeecCCC-CCccccccEEEcCCCc-EEEecC
Q 039124 174 GSKGGLATPLATQAGG-KPILFANDLDVHKNGS-IFFTDT 211 (259)
Q Consensus 174 ~~~gg~~~~l~~~~~g-~pl~~~Ndl~vd~dG~-IyfTDs 211 (259)
|.++++......--.+ .+......+++.+||+ +|++..
T Consensus 89 d~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~ 128 (426)
T d1hzua2 89 DLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY 128 (426)
T ss_dssp ETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred EccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeec
Confidence 9988864433321111 1222333444456887 677653
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.27 E-value=0.055 Score=43.34 Aligned_cols=103 Identities=17% Similarity=0.006 Sum_probs=66.0
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
....+++|+++|+.++++..+|.|..++........ .. ...........++|+++ |
T Consensus 227 ~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~--~~---------------------~~~~~~~~i~~~~~s~~-~ 282 (340)
T d1tbga_ 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELM--TY---------------------SHDNIICGITSVSFSKS-G 282 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--EE---------------------CCTTCCSCEEEEEECSS-S
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccc--cc---------------------ccccccCceEEEEECCC-C
Confidence 345689999999999999999999999876542111 00 00111222457899984 8
Q ss_pred cEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 160 DLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 160 ~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
+++++-...| |...|..+++.... ..+. -...+++++.+||...+|-
T Consensus 283 ~~l~~g~~dg~i~iwd~~~~~~~~~---~~~H-~~~V~~l~~s~d~~~l~s~ 330 (340)
T d1tbga_ 283 RLLLAGYDDFNCNVWDALKADRAGV---LAGH-DNRVSCLGVTDDGMAVATG 330 (340)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEE---ECCC-SSCEEEEEECTTSSCEEEE
T ss_pred CEEEEEECCCEEEEEECCCCcEEEE---EcCC-CCCEEEEEEeCCCCEEEEE
Confidence 7777655555 66678877643222 2221 1246889999999877764
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=96.26 E-value=0.11 Score=45.33 Aligned_cols=116 Identities=10% Similarity=-0.060 Sum_probs=69.8
Q ss_pred CCCceeEEEc----CCCCEEEE-EcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEE
Q 039124 79 VFGPESLEFD----GLGRGPYT-GLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLR 153 (259)
Q Consensus 79 l~gPE~ia~D----~~G~~~yt-~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~ 153 (259)
..+|+++++. ++|+.+|+ +..++.|..|+........ .... .. . ... .......+++.++.
T Consensus 104 ~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~-~~~~-~~-~-~~~----------~~~~~~~~~~~~v~ 169 (432)
T d1qksa2 104 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK-IQST-RG-M-TYD----------EQEYHPEPRVAAIL 169 (432)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE-EEEC-CE-E-CTT----------TCCEESCCCEEEEE
T ss_pred CCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccccee-eecc-CC-c-ccc----------ceeccCCCceeEEE
Confidence 3578888775 47986664 5668999999987653221 1110 00 0 000 01123467888999
Q ss_pred EeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecC
Q 039124 154 FNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDT 211 (259)
Q Consensus 154 ~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDs 211 (259)
+.+++..++|+....+ +..++..+++...+..-..| ..++++++++||+ +|++..
T Consensus 170 ~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g---~~~~~~~~spdg~~~~va~~ 226 (432)
T d1qksa2 170 ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE---RFLHDGGLDGSHRYFITAAN 226 (432)
T ss_dssp ECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC---SSEEEEEECTTSCEEEEEEG
T ss_pred ECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEccc---CccccceECCCCCEEEEecc
Confidence 9986335567665555 78888776543333321122 3689999999998 566543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.24 E-value=0.042 Score=44.02 Aligned_cols=105 Identities=6% Similarity=0.004 Sum_probs=63.2
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
....++++.++++.++++..+|.|..++..+........ ....+....++++++ +
T Consensus 137 ~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~------------------------~~~~~~i~~~~~~~~-~ 191 (299)
T d1nr0a2 137 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT------------------------IVHPAEITSVAFSNN-G 191 (299)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE------------------------EECSSCEEEEEECTT-S
T ss_pred ccccccccccccccccccccccccccccccccccccccc------------------------ccccccccccccccc-c
Confidence 456678888888888888888888888765442111100 011234578999985 7
Q ss_pred cEEE-EeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 160 DLYI-ADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 160 ~L~V-aD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
..++ ++....+...+..++..........+. -...+.++++++|...+|-
T Consensus 192 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~sg 242 (299)
T d1nr0a2 192 AFLVATDQSRKVIPYSVANNFELAHTNSWTFH-TAKVACVSWSPDNVRLATG 242 (299)
T ss_dssp SEEEEEETTSCEEEEEGGGTTEESCCCCCCCC-SSCEEEEEECTTSSEEEEE
T ss_pred cccccccccccccccccccccccccccccccc-ccccccccccccccceEEE
Confidence 6655 444445777787665322222222221 2346788999999866653
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.21 E-value=0.015 Score=46.81 Aligned_cols=112 Identities=17% Similarity=0.131 Sum_probs=67.2
Q ss_pred eEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcce
Q 039124 72 KLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLG 151 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlG 151 (259)
.++..|.-..=.+++|.++|+.++++..||.|..|+.+...... . .. ....+.-..
T Consensus 5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~-----------~------------~~-~~h~~~v~~ 60 (299)
T d1nr0a2 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR-----------V------------FP-DVHATMITG 60 (299)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-----------C------------SS-CSCSSCEEE
T ss_pred ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE-----------E------------Ec-CCCCCcEEE
Confidence 45666766667789999999999999999999999976542111 0 00 011223358
Q ss_pred EEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 152 LRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 152 l~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
++|.+ +|.++++.....+..++..+........ .....-..+..+++.++|++.++
T Consensus 61 v~~~~-~g~~~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~g~~~~~ 116 (299)
T d1nr0a2 61 IKTTS-KGDLFTVSWDDHLKVVPAGGSGVDSSKA-VANKLSSQPLGLAVSADGDIAVA 116 (299)
T ss_dssp EEECT-TSCEEEEETTTEEEEECSSSSSSCTTSC-CEEECSSCEEEEEECTTSSCEEE
T ss_pred EEeec-cceeecccceeeEEEeccCCcccccccc-ccccccccccccccccccccccc
Confidence 89998 4899888776667777654332111100 00001123456777777764443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.10 E-value=0.21 Score=40.53 Aligned_cols=107 Identities=10% Similarity=-0.106 Sum_probs=63.4
Q ss_pred eEEEcCCCCEEEEEc----------CCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEE
Q 039124 84 SLEFDGLGRGPYTGL----------ADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLR 153 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~----------~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~ 153 (259)
+++|.++|+.+|+.. .+|.|..|+......... ..... ......+..|.+++
T Consensus 51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~-~~~~~-----------------~~~~~~~~~~~~~~ 112 (355)
T d2bbkh_ 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTAD-IELPD-----------------APRFLVGTYPWMTS 112 (355)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE-EEETT-----------------CCCCCBSCCGGGEE
T ss_pred ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEE-EecCC-----------------cceeecCCCCceEE
Confidence 799999999888743 367899998876532211 11000 01123467799999
Q ss_pred EeCCCCcEEEEeCCCc--eEEEECCCCeEEEeeecCCCC----CccccccEEEcCCCc-EEEe
Q 039124 154 FNKDTGDLYIADAYYG--LLVVGSKGGLATPLATQAGGK----PILFANDLDVHKNGS-IFFT 209 (259)
Q Consensus 154 ~d~~~G~L~VaD~~~G--l~~v~~~gg~~~~l~~~~~g~----pl~~~Ndl~vd~dG~-IyfT 209 (259)
|.+++..+++++...+ +..++..+++...... ..+. +......+.+.+||. ++++
T Consensus 113 ~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dg~~~~v~ 174 (355)
T d2bbkh_ 113 LTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD-VPDCYHIFPTAPDTFFMHCRDGSLAKVA 174 (355)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCSEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred EecCCCeeEEecCCCCceeeeeecCCCcEeeEEe-cCCcceEeecCCcceEEEcCCCCEEEEE
Confidence 9996556778875433 5666777775332221 1111 222344578888887 4444
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.08 E-value=0.17 Score=42.27 Aligned_cols=102 Identities=12% Similarity=0.006 Sum_probs=61.7
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEE
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLY 162 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~ 162 (259)
.+++|+++|+.+.++..+|.|.-|+.++..++.... +. .| .+.-..|+|.++ |+++
T Consensus 11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~---------l~-------------gH-~~~V~~l~fsp~-~~~l 66 (371)
T d1k8kc_ 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE---------LK-------------EH-NGQVTGVDWAPD-SNRI 66 (371)
T ss_dssp CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEE---------EE-------------CC-SSCEEEEEEETT-TTEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEE---------ec-------------CC-CCCEEEEEECCC-CCEE
Confidence 589999999988899999998888876543322110 00 11 122468999994 7766
Q ss_pred EEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 163 IADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 163 VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
++-...+ +...+.+++..+..... .+ .-.....++++|+|+..++-
T Consensus 67 ~s~s~D~~i~vWd~~~~~~~~~~~~-~~-~~~~v~~i~~~p~~~~l~~~ 113 (371)
T d1k8kc_ 67 VTCGTDRNAYVWTLKGRTWKPTLVI-LR-INRAARCVRWAPNEKKFAVG 113 (371)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEC-CC-CSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCeEEEEeeccccccccccc-cc-ccccccccccccccccceee
Confidence 6433334 55557666543333221 11 12346788888888855543
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.04 E-value=0.25 Score=40.39 Aligned_cols=101 Identities=13% Similarity=0.098 Sum_probs=64.9
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
-....++++.+++..++++..+|.|..|+........ . . ...+....++++++
T Consensus 183 ~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~--~---------------------~---~~~~~i~~l~~~~~- 235 (337)
T d1gxra_ 183 TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ--Q---------------------H---DFTSQIFSLGYCPT- 235 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--E---------------------E---ECSSCEEEEEECTT-
T ss_pred ccccccccccccccccccccccccccccccccceeec--c---------------------c---ccccceEEEEEccc-
Confidence 3455688898999989999999999999876542111 0 0 11233568899984
Q ss_pred CcEEEE-eCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 159 GDLYIA-DAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 159 G~L~Va-D~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
++++++ .....+...+.++++..... .. -...+.+++.++|+..+|-+
T Consensus 236 ~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~---~~~i~~v~~s~~g~~l~s~s 284 (337)
T d1gxra_ 236 GEWLAVGMESSNVEVLHVNKPDKYQLH--LH---ESCVLSLKFAYCGKWFVSTG 284 (337)
T ss_dssp SSEEEEEETTSCEEEEETTSSCEEEEC--CC---SSCEEEEEECTTSSEEEEEE
T ss_pred ccccceecccccccccccccccccccc--cc---ccccceEEECCCCCEEEEEe
Confidence 766554 44444777788776533221 11 12467899999998776643
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=95.97 E-value=0.19 Score=41.23 Aligned_cols=78 Identities=8% Similarity=-0.176 Sum_probs=44.8
Q ss_pred eeEEEcCCCCEEEEEc----------CCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceE
Q 039124 83 ESLEFDGLGRGPYTGL----------ADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGL 152 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~----------~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl 152 (259)
.+++|.++|+.+|+.. .++.|..|+........ ...... .........|.++
T Consensus 69 ~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~-~~~~~~-----------------~~~~~~~~~~~~~ 130 (373)
T d2madh_ 69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA-DIELPD-----------------APRFDVGPYSWMN 130 (373)
T ss_pred ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEE-EEecCC-----------------cceeEeccCCCcE
Confidence 3799999999888864 34667778776553211 111000 0112234568899
Q ss_pred EEeCCCCcEEEEeCCC--ceEEEECCCC
Q 039124 153 RFNKDTGDLYIADAYY--GLLVVGSKGG 178 (259)
Q Consensus 153 ~~d~~~G~L~VaD~~~--Gl~~v~~~gg 178 (259)
+|.+++..++|+.... .+..++..++
T Consensus 131 ~~s~dg~~~~v~~~~~~~~~~~~~~~~~ 158 (373)
T d2madh_ 131 ANTPNNADLLFFQFAAGPAVGLVVQGGS 158 (373)
T ss_pred EEEeCCCcEEEEEEcCCCceEEeeccCC
Confidence 9998645667665332 2444555554
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.96 E-value=0.16 Score=43.46 Aligned_cols=32 Identities=16% Similarity=-0.096 Sum_probs=28.9
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~ 111 (259)
..|++++|.++|+.+|++..+|.|..|+.+..
T Consensus 62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~ 93 (426)
T d1hzua2 62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAK 93 (426)
T ss_dssp SSEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred CCeeEEEECCCCCEEEEEeCCCCEEEEEccCC
Confidence 57999999999999999999999999998654
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.35 Score=39.39 Aligned_cols=99 Identities=12% Similarity=0.002 Sum_probs=60.1
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEE
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLY 162 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~ 162 (259)
.+++|.++|+.++++..||.|..|+.......... ........-..++++++ +.++
T Consensus 101 ~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~-----------------------~~~~~~~~v~~~~~~~~-~~~l 156 (337)
T d1gxra_ 101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA-----------------------ELTSSAPACYALAISPD-SKVC 156 (337)
T ss_dssp EEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE-----------------------EEECSSSCEEEEEECTT-SSEE
T ss_pred EEEEEcCCCCEEEEeeccccccccccccccccccc-----------------------ccccccccccccccccc-cccc
Confidence 57899999999999999999999986543211100 00111222356778884 6665
Q ss_pred EE-eCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 163 IA-DAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 163 Va-D~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
++ .....+...+..+++........ ....+.+++.++|...++
T Consensus 157 ~s~~~d~~i~~~~~~~~~~~~~~~~~----~~~v~~l~~s~~~~~~~~ 200 (337)
T d1gxra_ 157 FSCCSDGNIAVWDLHNQTLVRQFQGH----TDGASCIDISNDGTKLWT 200 (337)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCC----SSCEEEEEECTTSSEEEE
T ss_pred cccccccccccccccccccccccccc----cccccccccccccccccc
Confidence 54 44445778888877543332211 124567888888874443
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.61 E-value=0.26 Score=41.35 Aligned_cols=109 Identities=12% Similarity=0.114 Sum_probs=63.5
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
...++++.++| .+.++..||.|..|+....... .... +. .........-..++|.++ |+
T Consensus 186 ~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~-~~~~--------~~----------~~l~~h~~~V~~l~~spd-g~ 244 (393)
T d1sq9a_ 186 FATSVDISERG-LIATGFNNGTVQISELSTLRPL-YNFE--------SQ----------HSMINNSNSIRSVKFSPQ-GS 244 (393)
T ss_dssp CCCEEEECTTS-EEEEECTTSEEEEEETTTTEEE-EEEE--------CC----------C---CCCCCEEEEEECSS-TT
T ss_pred cEEEEEECCCC-EEEEEeCCCcEEEEeecccccc-cccc--------cc----------cccccccceEEEcccccc-cc
Confidence 35678998887 5889999999999998754211 1110 00 001111223468999994 88
Q ss_pred EEEEeCC---CceEE-EECCCCeEE-EeeecC---------CCCCccccccEEEcCCCcEEEecC
Q 039124 161 LYIADAY---YGLLV-VGSKGGLAT-PLATQA---------GGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 161 L~VaD~~---~Gl~~-v~~~gg~~~-~l~~~~---------~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
++++-.. .++++ .|.++++.. .+.... .|. -...+.|++.+||++.+|-+
T Consensus 245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH-~~~V~~l~fspd~~~l~S~s 308 (393)
T d1sq9a_ 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSGETLCSAG 308 (393)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB-SSCEEEEEECSSSSEEEEEE
T ss_pred eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecc-cCceeeeccCCCCCeeEEEC
Confidence 8775332 23444 487776532 222110 111 13468899999999877754
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.45 E-value=0.28 Score=40.11 Aligned_cols=108 Identities=10% Similarity=0.057 Sum_probs=63.6
Q ss_pred EccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEE
Q 039124 74 EFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLR 153 (259)
Q Consensus 74 l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~ 153 (259)
++.+.-..-.+++|.++|+.+.++..||.|..|+........ .. ......+....++
T Consensus 53 ~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~-~~----------------------~~~~~~~~v~~v~ 109 (311)
T d1nr0a1 53 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL-KT----------------------TIPVFSGPVKDIS 109 (311)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE-EE----------------------EEECSSSCEEEEE
T ss_pred EEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc-cc----------------------ccccccCcccccc
Confidence 344545566889999999999999999999999876542110 00 0011123456899
Q ss_pred EeCCCCcEEEEeCC--Cc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEe
Q 039124 154 FNKDTGDLYIADAY--YG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFT 209 (259)
Q Consensus 154 ~d~~~G~L~VaD~~--~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfT 209 (259)
|.++ |.++++-.. .. +...+.++++.. ....+. ....+.+++.++|. +++|
T Consensus 110 ~s~d-~~~l~~~~~~~~~~~~v~~~~~~~~~---~~l~~h-~~~v~~v~~~~~~~~~l~s 164 (311)
T d1nr0a1 110 WDSE-SKRIAAVGEGRERFGHVFLFDTGTSN---GNLTGQ-ARAMNSVDFKPSRPFRIIS 164 (311)
T ss_dssp ECTT-SCEEEEEECCSSCSEEEEETTTCCBC---BCCCCC-SSCEEEEEECSSSSCEEEE
T ss_pred cccc-cccccccccccccccccccccccccc---cccccc-ccccccccccccceeeecc
Confidence 9995 776654332 22 334466655321 122221 23467788888887 3444
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.36 E-value=0.34 Score=39.16 Aligned_cols=80 Identities=13% Similarity=0.110 Sum_probs=49.7
Q ss_pred cceEEEeCCCCcEEEEeCC----------CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc--EEEecCCCCCC
Q 039124 149 PLGLRFNKDTGDLYIADAY----------YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS--IFFTDTSKRYN 216 (259)
Q Consensus 149 PlGl~~d~~~G~L~VaD~~----------~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~--IyfTDss~~~~ 216 (259)
+..+++.++...+|++-.. ..|..+|..+++...-.. . -..+.++++++||+ +|++..
T Consensus 251 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~----~~~~~~~a~spDG~~~l~v~~~----- 320 (355)
T d2bbkh_ 251 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-M----GHEIDSINVSQDEKPLLYALST----- 320 (355)
T ss_dssp SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-E----EEEECEEEECCSSSCEEEEEET-----
T ss_pred eEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-C----CCCEEEEEEcCCCCeEEEEEEC-----
Confidence 3457888853344554221 127778888775322111 1 13578999999997 566643
Q ss_pred cccceeeeeccCCCceEEEEeCCCCcEEEecCCC
Q 039124 217 RVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWL 250 (259)
Q Consensus 217 ~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L 250 (259)
..|.|+.||.+|++...-+++.
T Consensus 321 ------------~d~~i~v~D~~tg~~~~~i~~~ 342 (355)
T d2bbkh_ 321 ------------GDKTLYIHDAESGEELRSVNQL 342 (355)
T ss_dssp ------------TTTEEEEEETTTCCEEEEECCC
T ss_pred ------------CCCEEEEEECCCCCEEEEEeCc
Confidence 2468999999998865545554
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.19 E-value=0.14 Score=42.79 Aligned_cols=108 Identities=8% Similarity=-0.196 Sum_probs=64.7
Q ss_pred eEEEcCCCCEEEEEc----------CCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEE
Q 039124 84 SLEFDGLGRGPYTGL----------ADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLR 153 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~----------~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~ 153 (259)
.+++.++|+.+|+.. .++.|..|+..+...... ...+. .........|.+++
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~-i~~p~-----------------~~~~~~g~~p~~~a 130 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD-IELPD-----------------APRFSVGPRVHIIG 130 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE-EEETT-----------------SCSCCBSCCTTSEE
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeee-ecCCc-----------------cceecccCCccceE
Confidence 689999999888754 256799999876532211 11000 01123456789999
Q ss_pred EeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCcc----ccccEEEcCCCcEEEec
Q 039124 154 FNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPIL----FANDLDVHKNGSIFFTD 210 (259)
Q Consensus 154 ~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~----~~Ndl~vd~dG~IyfTD 210 (259)
|.+++..|||++...+ +..+|.++++...... ..+.+.. ...-+++.+||.+.+.+
T Consensus 131 ~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~Dg~~~~~~ 191 (368)
T d1mdah_ 131 NCASSACLLFFLFGSSAAAGLSVPGASDDQLTK-SASCFHIHPGAAATHYLGSCPASLAASD 191 (368)
T ss_dssp ECTTSSCEEEEECSSSCEEEEEETTTEEEEEEE-CSSCCCCEEEETTEEECCCCTTSCEEEE
T ss_pred ECCCCCEEEEEeCCCCeEEEEECCCCcEeEEee-ccCcceEccCCCceEEEEcCCCCEEEEE
Confidence 9996446889986544 8888988876444332 2222111 22335667788755544
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.18 E-value=0.31 Score=40.48 Aligned_cols=105 Identities=9% Similarity=-0.008 Sum_probs=61.5
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
..-.+++|.++|+.+.++..|+.|..|+.+...+... ............++|+++ |
T Consensus 52 ~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~-----------------------~~~~~~~~~v~~i~~~p~-~ 107 (371)
T d1k8kc_ 52 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT-----------------------LVILRINRAARCVRWAPN-E 107 (371)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE-----------------------EECCCCSSCEEEEEECTT-S
T ss_pred CCEEEEEECCCCCEEEEEECCCeEEEEeecccccccc-----------------------cccccccccccccccccc-c
Confidence 3447899999999899999999999998765432211 001111233568999995 7
Q ss_pred cEEEEeCCCc---eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 160 DLYIADAYYG---LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 160 ~L~VaD~~~G---l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
+.+++-...+ ++.++..... ........+ --.....++++|+|+.++|-
T Consensus 108 ~~l~~~s~d~~i~i~~~~~~~~~-~~~~~~~~~-~~~~v~~v~~~p~~~~l~s~ 159 (371)
T d1k8kc_ 108 KKFAVGSGSRVISICYFEQENDW-WVCKHIKKP-IRSTVLSLDWHPNSVLLAAG 159 (371)
T ss_dssp SEEEEEETTSSEEEEEEETTTTE-EEEEEECTT-CCSCEEEEEECTTSSEEEEE
T ss_pred ccceeecccCcceeeeeeccccc-ccccccccc-cccccccccccccccceecc
Confidence 6655544444 4444544432 222221111 11235678888888866653
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.04 E-value=0.21 Score=45.31 Aligned_cols=125 Identities=13% Similarity=0.121 Sum_probs=69.2
Q ss_pred CEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCC-cceEEEeCCCCcEEEEeCCCce
Q 039124 92 RGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGR-PLGLRFNKDTGDLYIADAYYGL 170 (259)
Q Consensus 92 ~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gr-PlGl~~d~~~G~L~VaD~~~Gl 170 (259)
..+|+...+|+|+.++...+. +.+.+.... .+ .. .....|.. ..+++... +.+|+.+....|
T Consensus 67 g~vyv~t~~~~v~AlDa~tG~-~lW~~~~~~-~~--~~-----------~~~~~~~~~~~~~~~~~--~~v~~~~~~g~l 129 (560)
T d1kv9a2 67 GVIYTSMSWSRVIAVDAASGK-ELWRYDPEV-AK--VK-----------ARTSCCDAVNRGVALWG--DKVYVGTLDGRL 129 (560)
T ss_dssp TEEEEEEGGGEEEEEETTTCC-EEEEECCCC-CG--GG-----------GGGCTTCSCCCCCEEEB--TEEEEECTTSEE
T ss_pred CEEEEECCCCeEEEEeCCCCC-EEEEECCCC-Cc--cc-----------cccccccccccCcceeC--CeEEEEeCCCEE
Confidence 348888889999999988652 223221000 00 00 00112222 23666664 689988887789
Q ss_pred EEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEE
Q 039124 171 LVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSY 245 (259)
Q Consensus 171 ~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~v 245 (259)
+.+|.++|+...-....+.........--+--+|.||+...... ....|.|..||.+||+..-
T Consensus 130 ~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~------------~~~~G~v~a~D~~TG~~~W 192 (560)
T d1kv9a2 130 IALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAE------------YGVRGFVSAYDADTGKLAW 192 (560)
T ss_dssp EEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTT------------TCCBCEEEEEETTTCCEEE
T ss_pred EEEECCCCcEEeccCccCcccceeeeeeeeeecCccccccccee------------ccccceEEEEECCCceEEe
Confidence 99999988633222211111111122222223566777654432 2445899999999998754
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.99 E-value=0.22 Score=45.43 Aligned_cols=82 Identities=16% Similarity=0.096 Sum_probs=51.3
Q ss_pred ceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccc-cEEEcCCCcEEEecCCCCCCcccceeeeeccC
Q 039124 150 LGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFAN-DLDVHKNGSIFFTDTSKRYNRVDHFFILLEGE 228 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~N-dl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~ 228 (259)
.|+++.. +.+|+.+....|+.+|.++|+...-....+..+..... .-.+ -++.||+.-++.. ..
T Consensus 109 rg~a~~~--~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v-~~~~vivg~~~~~------------~~ 173 (571)
T d2ad6a1 109 RGLAYGA--GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKDTVLMGCSGAE------------LG 173 (571)
T ss_dssp CCCEEET--TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEEECBCGG------------GT
T ss_pred CcceeeC--CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeE-eCCeEEEeecccc------------cc
Confidence 4788874 79999988777999999999643222111111111111 2222 2467888765532 24
Q ss_pred CCceEEEEeCCCCcEEEe
Q 039124 229 STGRLLRYDPPTKSNSYC 246 (259)
Q Consensus 229 ~~GrL~rydp~tg~~~vl 246 (259)
..|.|..||..||+..-.
T Consensus 174 ~~G~v~a~D~~TG~~~W~ 191 (571)
T d2ad6a1 174 VRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp CCCEEEEEETTTCCEEEE
T ss_pred ccCcEEEEECCCCcEEEE
Confidence 568999999999987643
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.97 E-value=0.72 Score=37.45 Aligned_cols=105 Identities=15% Similarity=0.170 Sum_probs=61.9
Q ss_pred CCceeEEEcCCCCE-EEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 80 FGPESLEFDGLGRG-PYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 80 ~gPE~ia~D~~G~~-~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
..-.+++|.++|.. +.++..+|.|..|+........ . .......-..++++++
T Consensus 147 ~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~-~------------------------~~~~~~~i~~v~~~p~- 200 (311)
T d1nr0a1 147 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS-T------------------------FGEHTKFVHSVRYNPD- 200 (311)
T ss_dssp SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE-E------------------------ECCCSSCEEEEEECTT-
T ss_pred cccccccccccceeeeccccccccccccccccccccc-c------------------------cccccccccccccCcc-
Confidence 34567889988874 6678889999999887642111 0 0011123468999994
Q ss_pred CcEEEEeCCCc-eEEEECCCCeEEEeeecCCCC---CccccccEEEcCCCcEEEec
Q 039124 159 GDLYIADAYYG-LLVVGSKGGLATPLATQAGGK---PILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 159 G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~---pl~~~Ndl~vd~dG~IyfTD 210 (259)
|+++++-...| +...+...+............ --...+.++++++|+..+|-
T Consensus 201 ~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tg 256 (311)
T d1nr0a1 201 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 256 (311)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEE
Confidence 77766544444 666687765432221111000 01235788999999877763
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=94.20 E-value=0.5 Score=42.80 Aligned_cols=126 Identities=13% Similarity=0.099 Sum_probs=71.3
Q ss_pred CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCC-CcceEEEeCCCCcEEEEeCCC
Q 039124 90 LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCG-RPLGLRFNKDTGDLYIADAYY 168 (259)
Q Consensus 90 ~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g-rPlGl~~d~~~G~L~VaD~~~ 168 (259)
+| .+|+...+++|+.++...+. ..+.+.... + .. ......++ ...|+.+.. +.+|+.....
T Consensus 77 ~g-~vyv~t~~~~v~AlDa~TG~-~~W~~~~~~--~-~~-----------~~~~~~~~~~~~g~~~~~--~~v~~~t~~g 138 (573)
T d1kb0a2 77 DG-IMYVSASWSVVHAIDTRTGN-RIWTYDPQI--D-RS-----------TGFKGCCDVVNRGVALWK--GKVYVGAWDG 138 (573)
T ss_dssp TT-EEEEECGGGCEEEEETTTTE-EEEEECCCC--C-GG-----------GGGGSSSCSCCCCCEEET--TEEEEECTTS
T ss_pred CC-EEEEECCCCeEEEEeCCCCC-eEEEeCCCC--C-cc-----------cccccccccccccceEEC--CcEEEEeccc
Confidence 35 48888889999999998652 333221100 0 00 00011111 124777774 6899988777
Q ss_pred ceEEEECCCCeEEEeeecCCCCCc-cccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEE
Q 039124 169 GLLVVGSKGGLATPLATQAGGKPI-LFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSY 245 (259)
Q Consensus 169 Gl~~v~~~gg~~~~l~~~~~g~pl-~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~v 245 (259)
.++.+|.++|+...-....++... .....--+--+|.||+..++.. ....|.|..+|..||+..-
T Consensus 139 ~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~------------~~~~G~v~a~D~~TG~~~W 204 (573)
T d1kb0a2 139 RLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE------------YGVRGYITAYDAETGERKW 204 (573)
T ss_dssp EEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT------------TCCBCEEEEEETTTCCEEE
T ss_pred ceeeeccccccceecccCccCCcceEEeecceEEEeccEEEeecccc------------ccccceEEEEecCCcccee
Confidence 899999999964322222222211 1112222223667887665532 3456889999999987643
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.73 E-value=1 Score=34.53 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=58.1
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.|.-..=.+++|.++++.+.|+..||.|..|+.+...... ......+.-..++++
T Consensus 14 ~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~-------------------------~~~~h~~~V~~~~~~ 68 (317)
T d1vyhc1 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER-------------------------TLKGHTDSVQDISFD 68 (317)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE-------------------------EECCCSSCEEEEEEC
T ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEE-------------------------EEeCCCCcEEEEeee
Confidence 3433344689999999999999999999999876542110 001112234678888
Q ss_pred CCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 156 KDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 156 ~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
++ +.++++....+ +...+........... + .......+.+.++++..++
T Consensus 69 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~ 118 (317)
T d1vyhc1 69 HS-GKLLASCSADMTIKLWDFQGFECIRTMH---G-HDHNVSSVSIMPNGDHIVS 118 (317)
T ss_dssp TT-SSEEEEEETTSCCCEEETTSSCEEECCC---C-CSSCEEEEEECSSSSEEEE
T ss_pred cc-cccccccccccccccccccccccccccc---c-ccccceeeeccCCCceEEe
Confidence 84 77766544443 4455554443222211 1 1123445556666654433
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.62 E-value=1.2 Score=34.63 Aligned_cols=100 Identities=15% Similarity=0.079 Sum_probs=53.8
Q ss_pred EcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEEeC
Q 039124 87 FDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADA 166 (259)
Q Consensus 87 ~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~VaD~ 166 (259)
+..+++.++++..+|.|..|+........ ... ...........+.++ ++++++-+
T Consensus 223 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~---------------------~~~~~~~~~~~~~~~---~~~~~s~s 277 (342)
T d2ovrb2 223 MELKDNILVSGNADSTVKIWDIKTGQCLQ-TLQ---------------------GPNKHQSAVTCLQFN---KNFVITSS 277 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCCEEE-EEC---------------------STTSCSSCEEEEEEC---SSEEEEEE
T ss_pred EecCCCEEEEEcCCCEEEEEecccccccc-ccc---------------------ccceeeeceeecccC---CCeeEEEc
Confidence 33446678888888888888765542111 000 000111122344444 45655544
Q ss_pred CCc-eEEEECCCCeE-EEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 167 YYG-LLVVGSKGGLA-TPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 167 ~~G-l~~v~~~gg~~-~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
..| |...|.++++. ..+.....+..-...+.++++++|.+..+-+
T Consensus 278 ~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~ 324 (342)
T d2ovrb2 278 DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 324 (342)
T ss_dssp TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred CCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEe
Confidence 455 56668877653 3343322222223478999999998777644
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=93.51 E-value=0.3 Score=43.39 Aligned_cols=117 Identities=15% Similarity=0.029 Sum_probs=71.5
Q ss_pred cCCCeEEccCCCCCceeEEEc--CCCCEEEEE-cCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccC
Q 039124 68 LVTGKLEFVDEVFGPESLEFD--GLGRGPYTG-LADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEK 144 (259)
Q Consensus 68 L~~~e~l~~~~l~gPE~ia~D--~~G~~~yt~-~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~ 144 (259)
|.......-+....|.-...+ ++|+.+|+. -.+.+|.+|+.+...... ....+
T Consensus 58 l~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~------------------------ii~iP 113 (441)
T d1qnia2 58 LGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDK------------------------ITHIP 113 (441)
T ss_dssp HCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEE------------------------EEECT
T ss_pred EecccccccCcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEee------------------------EEecC
Confidence 333333444566677665554 579877765 578999999988652111 00123
Q ss_pred cCCCcceEEEeCCCCcEEEEeCCC-c------------------eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc
Q 039124 145 WCGRPLGLRFNKDTGDLYIADAYY-G------------------LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS 205 (259)
Q Consensus 145 ~~grPlGl~~d~~~G~L~VaD~~~-G------------------l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~ 205 (259)
.+..|+|++|.++...+||+.... . +..+|.++.+...-+ ..++ .|.++++++||.
T Consensus 114 ~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI-~v~~----~p~~v~~spdGk 188 (441)
T d1qnia2 114 NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV-IVDG----NLDNTDADYTGK 188 (441)
T ss_dssp TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE-EESS----CCCCEEECSSSS
T ss_pred CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE-ecCC----CccceEECCCCC
Confidence 466799999998533568864322 1 234677665432111 1222 589999999998
Q ss_pred -EEEecCCC
Q 039124 206 -IFFTDTSK 213 (259)
Q Consensus 206 -IyfTDss~ 213 (259)
+|+|...+
T Consensus 189 ~a~vt~~ns 197 (441)
T d1qnia2 189 YATSTCYNS 197 (441)
T ss_dssp EEEEEESCT
T ss_pred EEEEEecCC
Confidence 88886554
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.32 E-value=1.4 Score=34.46 Aligned_cols=100 Identities=11% Similarity=0.065 Sum_probs=59.6
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEE
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLY 162 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~ 162 (259)
....+.+.+..+.++..++.|..|+........ . .....+....++++++ |+++
T Consensus 188 ~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~-~------------------------~~~h~~~i~~v~~~p~-~~~l 241 (340)
T d1tbga_ 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ-T------------------------FTGHESDINAICFFPN-GNAF 241 (340)
T ss_dssp EEEEECTTSSEEEEEETTTEEEEEETTTTEEEE-E------------------------ECCCSSCEEEEEECTT-SSEE
T ss_pred eeeccccccceeEEeecCceEEEEECCCCcEEE-E------------------------EeCCCCCeEEEEECCC-CCEE
Confidence 445566677878889999999999876542110 0 0111233468999984 7776
Q ss_pred EEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 163 IADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 163 VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
++-...| +...+............ .......+.++++++|++.++-
T Consensus 242 ~s~s~d~~i~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~g 288 (340)
T d1tbga_ 242 ATGSDDATCRLFDLRADQELMTYSH--DNIICGITSVSFSKSGRLLLAG 288 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECC--TTCCSCEEEEEECSSSCEEEEE
T ss_pred EEEeCCCeEEEEeeccccccccccc--ccccCceEEEEECCCCCEEEEE
Confidence 6544445 66667776542222211 1122346788899998866653
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=93.03 E-value=0.65 Score=36.08 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=39.8
Q ss_pred ceEEEeCCCCc-EE-EEeCC-----CceEEEECCCCeEEEeeecCC--CCCccccccEEEcCCCc-EEEecCCCC
Q 039124 150 LGLRFNKDTGD-LY-IADAY-----YGLLVVGSKGGLATPLATQAG--GKPILFANDLDVHKNGS-IFFTDTSKR 214 (259)
Q Consensus 150 lGl~~d~~~G~-L~-VaD~~-----~Gl~~v~~~gg~~~~l~~~~~--g~pl~~~Ndl~vd~dG~-IyfTDss~~ 214 (259)
.+.++.++ |+ |. +.+.. ..|+.++..+++.+.|..... ..+..........+||+ |+|+.....
T Consensus 44 ~~p~~SPD-G~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 117 (281)
T d1k32a2 44 NNARFFPD-GRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQP 117 (281)
T ss_dssp EEEEECTT-SSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSS
T ss_pred cCEEECCC-CCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCC
Confidence 45677884 65 32 23211 138899999998777753211 12344667888999997 788766543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=93.00 E-value=0.76 Score=41.91 Aligned_cols=82 Identities=13% Similarity=0.091 Sum_probs=48.2
Q ss_pred eEEEeCCCC----cEEEEeCCCceEEEECCCCeEEEeeecCCCCCc-cccccEEEcCCCcEEEecCCCCCCcccceeeee
Q 039124 151 GLRFNKDTG----DLYIADAYYGLLVVGSKGGLATPLATQAGGKPI-LFANDLDVHKNGSIFFTDTSKRYNRVDHFFILL 225 (259)
Q Consensus 151 Gl~~d~~~G----~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl-~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~ 225 (259)
|+++-.+++ .+|+.+....|+.+|.++|+...-....+.... .....-.+. ++.||+..++..
T Consensus 110 Gv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~-~~~vivg~~~~e----------- 177 (596)
T d1w6sa_ 110 GLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAE----------- 177 (596)
T ss_dssp CCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGG-----------
T ss_pred eeEEecCCCCCceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEE-CCeEEEeecccc-----------
Confidence 777754211 377777776799999999974332221111111 111111222 667888766543
Q ss_pred ccCCCceEEEEeCCCCcEEE
Q 039124 226 EGESTGRLLRYDPPTKSNSY 245 (259)
Q Consensus 226 e~~~~GrL~rydp~tg~~~v 245 (259)
....|.|..||..||+..-
T Consensus 178 -~~~~G~v~A~Da~TG~~~W 196 (596)
T d1w6sa_ 178 -LGVRGYLTAYDVKTGEQVW 196 (596)
T ss_dssp -GTCCCEEEEEETTTCCEEE
T ss_pred -ccccCceEEEECCCCcEEE
Confidence 3456899999999998753
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.57 E-value=0.57 Score=38.12 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=60.9
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcE
Q 039124 82 PESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDL 161 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L 161 (259)
-.+++|.++|+.++++..+|.|..|+........ ...... ...|. ............+++.++ |.+
T Consensus 257 v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~--~~~~~----------~~~~~~~~~v~~~~~s~~-~~~ 322 (388)
T d1erja_ 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS-DSKTPN--SGTCE----------VTYIGHKDFVLSVATTQN-DEY 322 (388)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEC------------------CEE----------EEEECCSSCEEEEEECGG-GCE
T ss_pred EEEEEECCCCCEEEEEECCCcEEEEeccCCcccc-cccccc--cccee----------eecccccceEEEEEECCC-CCE
Confidence 4678999999999999999999988865431110 000000 00010 000111234468899984 777
Q ss_pred EEEeCCCc-eEEEECCCCeEEEeeecCCCC--CccccccEEEcCCCcEEEecC
Q 039124 162 YIADAYYG-LLVVGSKGGLATPLATQAGGK--PILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 162 ~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~--pl~~~Ndl~vd~dG~IyfTDs 211 (259)
+++-...| |...|.++++.......-.+. .+.+.+++.+.++|++.+|-+
T Consensus 323 l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s 375 (388)
T d1erja_ 323 ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375 (388)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred EEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEe
Confidence 66544545 666688877532222211111 122344555667888777643
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=91.41 E-value=0.28 Score=38.42 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=37.4
Q ss_pred eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEEe
Q 039124 170 LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYC 246 (259)
Q Consensus 170 l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl 246 (259)
|+.++.++++.+.|... ++ .....++.|||+ |.|+-.... ....+.++.++..+++.+.|
T Consensus 23 l~~~d~~~g~~~~Lt~~-~~----~~~~p~~SPDG~~iaf~~~~~~------------~~~~~~i~~~~~~~g~~~~l 83 (281)
T d1k32a2 23 LWEHDLKSGSTRKIVSN-LG----VINNARFFPDGRKIAIRVMRGS------------SLNTADLYFYNGENGEIKRI 83 (281)
T ss_dssp EEEEETTTCCEEEEECS-SS----EEEEEEECTTSSEEEEEEEEST------------TCCEEEEEEEETTTTEEEEC
T ss_pred EEEEECCCCCEEEEecC-CC----cccCEEECCCCCEEEEEEeeCC------------CCCceEEEEEEecCCceEEe
Confidence 66677777877777542 22 245678999997 766532111 12234688888877776665
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=91.01 E-value=2.3 Score=36.22 Aligned_cols=66 Identities=18% Similarity=0.328 Sum_probs=41.8
Q ss_pred CCcceEEEeCCCCcEEEEeCCCceEEEEC--CCCeEEEeeecCCCCC-ccccccEEEc----CCCcEEEecCC
Q 039124 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGS--KGGLATPLATQAGGKP-ILFANDLDVH----KNGSIFFTDTS 212 (259)
Q Consensus 147 grPlGl~~d~~~G~L~VaD~~~Gl~~v~~--~gg~~~~l~~~~~g~p-l~~~Ndl~vd----~dG~IyfTDss 212 (259)
..+-|.++|.+++.|||++-..|+++++. +++....++...+|.. ..=+-+|++= .+|-|.+|+-.
T Consensus 180 ~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG 252 (353)
T d1h6la_ 180 SQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQG 252 (353)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred CccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCC
Confidence 34669999988899999999999999964 4443344444444432 2235566652 24446666543
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.38 E-value=4.4 Score=36.23 Aligned_cols=69 Identities=7% Similarity=0.051 Sum_probs=43.9
Q ss_pred CEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCC-CcceEEEeCCCCcEEEEeCCCce
Q 039124 92 RGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCG-RPLGLRFNKDTGDLYIADAYYGL 170 (259)
Q Consensus 92 ~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g-rPlGl~~d~~~G~L~VaD~~~Gl 170 (259)
..+|+...+++|+.+++..+. ..+.+.... .. .....|+ ...|+++.. +.+|+.+....|
T Consensus 69 g~vy~~t~~~~v~AlDa~TG~-~lW~~~~~~----~~------------~~~~~~~~~~rg~a~~~--~~i~~~t~~~~l 129 (582)
T d1flga_ 69 GVIYVTASYSRLFALDAKTGK-RLWTYNHRL----PD------------DIRPCCDVVNRGAAIYG--DKVFFGTLDASV 129 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCC-EEEEEECCC----CT------------TCCCSSCSCCCCCEEET--TEEEEEETTTEE
T ss_pred CEEEEeCCCCeEEEEeCCCCC-eEEEEcCCC----CC------------ccccccccccCCceEeC--CceEEecCCCeE
Confidence 458888899999999998653 223221100 00 0001111 124777774 689999888889
Q ss_pred EEEECCCCe
Q 039124 171 LVVGSKGGL 179 (259)
Q Consensus 171 ~~v~~~gg~ 179 (259)
+.+|.++|+
T Consensus 130 ~alda~tG~ 138 (582)
T d1flga_ 130 VALNKNTGK 138 (582)
T ss_dssp EEEESSSCC
T ss_pred EEecccccc
Confidence 999999986
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=89.73 E-value=0.97 Score=39.92 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=18.3
Q ss_pred cCCCCCceeEEEcCCCCEEEEEc
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGL 98 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~ 98 (259)
.....+|+++++.++|+..|+..
T Consensus 112 iP~g~gphgi~~spdg~t~YV~~ 134 (441)
T d1qnia2 112 IPNVQAIHGLRLQKVPKTNYVFC 134 (441)
T ss_dssp CTTCCCEEEEEECCSSBCCEEEE
T ss_pred cCCCCCccceEEeccCCEEEEEe
Confidence 34468999999999998777753
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.17 E-value=2.9 Score=35.30 Aligned_cols=98 Identities=10% Similarity=0.043 Sum_probs=55.8
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcE-
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDL- 161 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L- 161 (259)
.++.|-+++..+|.+ +|.|+.++..++....+ +.. . .+........+..|.+| |+-
T Consensus 20 ~~~~W~~d~~~~~~~--~~~~~~~~~~t~~~~~~-~~~----~---------------~~~~~~~~i~~~~~SpD-g~~i 76 (470)
T d2bgra1 20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF-LEN----S---------------TFDEFGHSINDYSISPD-GQFI 76 (470)
T ss_dssp CCCEECSSSEEEEES--SSCEEEEETTTCCEEEE-ECT----T---------------TTTTSSSCCCEEEECTT-SSEE
T ss_pred cCCEeCCCCEEEEEc--CCcEEEEECCCCCEEEE-Ech----h---------------hhhhccCccceeEECCC-CCEE
Confidence 355676777766654 67899999877632221 110 0 11222334568899995 763
Q ss_pred -EEEeC-------CCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEE
Q 039124 162 -YIADA-------YYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFF 208 (259)
Q Consensus 162 -~VaD~-------~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-Iyf 208 (259)
+..+. +.+ ++.+|.++++...+... + .......+.|||+ |.|
T Consensus 77 ~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~-~----~~~~~~~~SPDG~~ia~ 128 (470)
T d2bgra1 77 LLEYNYVKQWRHSYTASYDIYDLNKRQLITEERI-P----NNTQWVTWSPVGHKLAY 128 (470)
T ss_dssp EEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-C----TTEEEEEECSSTTCEEE
T ss_pred EEEECCcceeeeccCceEEEEECCCCcccccccC-C----ccccccccccCcceeeE
Confidence 33331 123 66779999875544322 1 1345678899998 444
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.08 E-value=4.6 Score=31.15 Aligned_cols=68 Identities=21% Similarity=0.130 Sum_probs=41.7
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEE
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYI 163 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~V 163 (259)
++.+ +|+.++|+..||.|..|+........ . .....+.-..++|.+ ++.|+.
T Consensus 18 c~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~-~------------------------l~~H~~~V~~l~~s~-~~~l~s 69 (355)
T d1nexb2 18 CLQF--EDNYVITGADDKMIRVYDSINKKFLL-Q------------------------LSGHDGGVWALKYAH-GGILVS 69 (355)
T ss_dssp EEEE--ETTEEEEEETTTEEEEEETTTTEEEE-E------------------------EECCSSCEEEEEEET-TTEEEE
T ss_pred EEEE--CCCEEEEEeCCCeEEEEECCCCcEEE-E------------------------EECCCCCEEEEEEcC-CCEEEE
Confidence 4555 47889999999999999987652111 0 011123346889987 355554
Q ss_pred EeCCCceEEEECCCCe
Q 039124 164 ADAYYGLLVVGSKGGL 179 (259)
Q Consensus 164 aD~~~Gl~~v~~~gg~ 179 (259)
+....-+...+.....
T Consensus 70 ~s~D~~i~iw~~~~~~ 85 (355)
T d1nexb2 70 GSTDRTVRVWDIKKGC 85 (355)
T ss_dssp EETTCCEEEEETTTTE
T ss_pred Eecccccccccccccc
Confidence 5444446666766654
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=87.22 E-value=1 Score=40.74 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=40.3
Q ss_pred CCcEEEEeCC-CceEEEEC-CCCeEEEeeecCCC----CCcc----ccccEEEcCCCcEEEecCCCCCCcccceeeeecc
Q 039124 158 TGDLYIADAY-YGLLVVGS-KGGLATPLATQAGG----KPIL----FANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEG 227 (259)
Q Consensus 158 ~G~L~VaD~~-~Gl~~v~~-~gg~~~~l~~~~~g----~pl~----~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~ 227 (259)
+|.+||+++. ..|+.+|. ++|+ ..+.-.... .... ...++++. +|+||+++.
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~-~~W~~~~~~~~~~~~~~~~~~~~rg~a~~-~~~i~~~~~---------------- 123 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGK-IVWQHKPKQDASTKAVMCCDVVDRGLAYG-AGQIVKKQA---------------- 123 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTS-EEEEECCCCCGGGGGGCTTCSCCCCCEEE-TTEEEEECT----------------
T ss_pred CCEEEEecCCCCeEEEEeCCCCCc-eEEEecCCCCcccccccccCcCCCcceee-CCeEEEEeC----------------
Confidence 4899999875 45999996 5564 233211110 1110 11345555 567888764
Q ss_pred CCCceEEEEeCCCCcE
Q 039124 228 ESTGRLLRYDPPTKSN 243 (259)
Q Consensus 228 ~~~GrL~rydp~tg~~ 243 (259)
.|+|+.+|.+||+.
T Consensus 124 --~g~l~alda~tG~~ 137 (571)
T d2ad6a1 124 --NGHLLALDAKTGKI 137 (571)
T ss_dssp --TSEEEEEETTTCCE
T ss_pred --CCcEEeeehhhhhh
Confidence 37899999999875
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.14 E-value=6 Score=31.49 Aligned_cols=29 Identities=34% Similarity=0.277 Sum_probs=25.2
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~ 111 (259)
.+++|.++|+.++++..+|.|..|+....
T Consensus 125 ~~l~~s~~~~~l~s~~~dg~v~i~~~~~~ 153 (388)
T d1erja_ 125 RSVCFSPDGKFLATGAEDRLIRIWDIENR 153 (388)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred EEEEECCCCCcceeccccccccccccccc
Confidence 36899999999999999999999987655
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.49 E-value=1.1 Score=40.50 Aligned_cols=66 Identities=15% Similarity=0.265 Sum_probs=41.0
Q ss_pred CCcEEEEeCCCceEEEECCCCeEEEeee--cCC--CCCc-c-ccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCc
Q 039124 158 TGDLYIADAYYGLLVVGSKGGLATPLAT--QAG--GKPI-L-FANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTG 231 (259)
Q Consensus 158 ~G~L~VaD~~~Gl~~v~~~gg~~~~l~~--~~~--g~pl-~-~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~G 231 (259)
+|.||+++....|+.+|+++|+. .+.- ... ..+. . ...++++. +++||+.+. .+
T Consensus 68 ~g~vy~~t~~~~v~AlDa~TG~~-lW~~~~~~~~~~~~~~~~~~rg~a~~-~~~i~~~t~------------------~~ 127 (582)
T d1flga_ 68 DGVIYVTASYSRLFALDAKTGKR-LWTYNHRLPDDIRPCCDVVNRGAAIY-GDKVFFGTL------------------DA 127 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCE-EEEEECCCCTTCCCSSCSCCCCCEEE-TTEEEEEET------------------TT
T ss_pred CCEEEEeCCCCeEEEEeCCCCCe-EEEEcCCCCCccccccccccCCceEe-CCceEEecC------------------CC
Confidence 48999999988899999998863 3321 111 1111 1 12344544 456777654 35
Q ss_pred eEEEEeCCCCcE
Q 039124 232 RLLRYDPPTKSN 243 (259)
Q Consensus 232 rL~rydp~tg~~ 243 (259)
+|+.+|.+||+.
T Consensus 128 ~l~alda~tG~~ 139 (582)
T d1flga_ 128 SVVALNKNTGKV 139 (582)
T ss_dssp EEEEEESSSCCE
T ss_pred eEEEecccccce
Confidence 788888887764
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.75 E-value=3.7 Score=33.73 Aligned_cols=87 Identities=15% Similarity=0.095 Sum_probs=47.6
Q ss_pred CceeEEEcCCCCEEEEEcCCCe---EEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 81 GPESLEFDGLGRGPYTGLADGR---IVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~---I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
.-.+++|.++|+++.++..|+. |.-|+.+...... ......... .+. ......-+.-..++|.++
T Consensus 233 ~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~-~l~~~~~~~-~~~----------~~~~gH~~~V~~l~fspd 300 (393)
T d1sq9a_ 233 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG-SLSVPTHSS-QAS----------LGEFAHSSWVMSLSFNDS 300 (393)
T ss_dssp CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE-EECBC-------------------CCBSBSSCEEEEEECSS
T ss_pred eEEEcccccccceeeeecCCCCcceeeecccccceeee-eeccccccc-cce----------eeeecccCceeeeccCCC
Confidence 3467899999999999887763 5556765442111 110000000 000 000111122367999994
Q ss_pred CCcEEEEeCCCc-eEEEECCCCeE
Q 039124 158 TGDLYIADAYYG-LLVVGSKGGLA 180 (259)
Q Consensus 158 ~G~L~VaD~~~G-l~~v~~~gg~~ 180 (259)
|+++++-...| |...|.++|+.
T Consensus 301 -~~~l~S~s~D~~v~vWd~~~g~~ 323 (393)
T d1sq9a_ 301 -GETLCSAGWDGKLRFWDVKTKER 323 (393)
T ss_dssp -SSEEEEEETTSEEEEEETTTTEE
T ss_pred -CCeeEEECCCCEEEEEECCCCCE
Confidence 88888666656 55559888853
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=84.74 E-value=0.66 Score=41.86 Aligned_cols=67 Identities=15% Similarity=0.228 Sum_probs=40.7
Q ss_pred CCcEEEEeCCCceEEEECCCCeEEEeeecCC--C-----CCccccc-cEEEcCCCcEEEecCCCCCCcccceeeeeccCC
Q 039124 158 TGDLYIADAYYGLLVVGSKGGLATPLATQAG--G-----KPILFAN-DLDVHKNGSIFFTDTSKRYNRVDHFFILLEGES 229 (259)
Q Consensus 158 ~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~--g-----~pl~~~N-dl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~ 229 (259)
+|.|||+.....|+.+|.++|+ ..+.-..+ . ......+ +++.. +++||+.+.
T Consensus 66 ~g~vyv~t~~~~v~AlDa~tG~-~lW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~------------------ 125 (560)
T d1kv9a2 66 DGVIYTSMSWSRVIAVDAASGK-ELWRYDPEVAKVKARTSCCDAVNRGVALW-GDKVYVGTL------------------ 125 (560)
T ss_dssp TTEEEEEEGGGEEEEEETTTCC-EEEEECCCCCGGGGGGCTTCSCCCCCEEE-BTEEEEECT------------------
T ss_pred CCEEEEECCCCeEEEEeCCCCC-EEEEECCCCCccccccccccccccCccee-CCeEEEEeC------------------
Confidence 4899999888779999999886 33321110 0 1111122 33333 456777664
Q ss_pred CceEEEEeCCCCcEE
Q 039124 230 TGRLLRYDPPTKSNS 244 (259)
Q Consensus 230 ~GrL~rydp~tg~~~ 244 (259)
.|+|+.+|.+||+..
T Consensus 126 ~g~l~Alda~tG~~~ 140 (560)
T d1kv9a2 126 DGRLIALDAKTGKAI 140 (560)
T ss_dssp TSEEEEEETTTCCEE
T ss_pred CCEEEEEECCCCcEE
Confidence 367888888888653
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=84.34 E-value=6.1 Score=34.68 Aligned_cols=110 Identities=15% Similarity=0.051 Sum_probs=67.8
Q ss_pred ccCCCCCceeEEEcC--CCCEEEEE-cCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcce
Q 039124 75 FVDEVFGPESLEFDG--LGRGPYTG-LADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLG 151 (259)
Q Consensus 75 ~~~~l~gPE~ia~D~--~G~~~yt~-~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlG 151 (259)
.-|....|+---.|. +|+.+|+. -.++||-||+.+.-.... +...+....++|
T Consensus 81 ~~GD~HHP~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~k------------------------Ii~iPn~~~~HG 136 (459)
T d1fwxa2 81 DNGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDA------------------------ILEIPNAKGIHG 136 (459)
T ss_dssp CCCCBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEE------------------------EEECSSCCSEEE
T ss_pred cCCCcCCCcccccCCccceeEEEEEcCCCceEEEEECcceeeeE------------------------EEecCCCCCCce
Confidence 346788884444442 68877765 578999999998652111 111234556889
Q ss_pred EEEeCCCCcEEEEe-CC------------------Cc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEec
Q 039124 152 LRFNKDTGDLYIAD-AY------------------YG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTD 210 (259)
Q Consensus 152 l~~d~~~G~L~VaD-~~------------------~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTD 210 (259)
++..+.....||+. .. .+ +-.||.++.++..-+. +++ .+.++++++||+ +|+|.
T Consensus 137 ~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~-V~g----~ld~~~~s~dGK~af~Ts 211 (459)
T d1fwxa2 137 LRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL-VSG----NLDNCDADYEGKWAFSTS 211 (459)
T ss_dssp EEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEE-ESS----CCCCEEECSSSSEEEEEE
T ss_pred eecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEee-eCC----ChhccccCCCCCEEEEEe
Confidence 98876433567753 11 13 3467888876443222 333 578999999999 66665
Q ss_pred CCC
Q 039124 211 TSK 213 (259)
Q Consensus 211 ss~ 213 (259)
..+
T Consensus 212 yNS 214 (459)
T d1fwxa2 212 YNS 214 (459)
T ss_dssp SCT
T ss_pred ccc
Confidence 443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=84.10 E-value=1 Score=40.67 Aligned_cols=67 Identities=13% Similarity=0.262 Sum_probs=41.6
Q ss_pred CCcEEEEeCCCceEEEECCCCeEEEeeecC--CCC-----Ccc-ccccEEEcCCCcEEEecCCCCCCcccceeeeeccCC
Q 039124 158 TGDLYIADAYYGLLVVGSKGGLATPLATQA--GGK-----PIL-FANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGES 229 (259)
Q Consensus 158 ~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~--~g~-----pl~-~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~ 229 (259)
+|.|||+++...|+.+|.++|+ ..+.-+. +.. ... ...++++. +++||++..
T Consensus 77 ~g~vyv~t~~~~v~AlDa~TG~-~~W~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~v~~~t~------------------ 136 (573)
T d1kb0a2 77 DGIMYVSASWSVVHAIDTRTGN-RIWTYDPQIDRSTGFKGCCDVVNRGVALW-KGKVYVGAW------------------ 136 (573)
T ss_dssp TTEEEEECGGGCEEEEETTTTE-EEEEECCCCCGGGGGGSSSCSCCCCCEEE-TTEEEEECT------------------
T ss_pred CCEEEEECCCCeEEEEeCCCCC-eEEEeCCCCCcccccccccccccccceEE-CCcEEEEec------------------
Confidence 4899999988889999999996 3443211 110 011 12234443 556777653
Q ss_pred CceEEEEeCCCCcEE
Q 039124 230 TGRLLRYDPPTKSNS 244 (259)
Q Consensus 230 ~GrL~rydp~tg~~~ 244 (259)
.|+|+.+|.+||+..
T Consensus 137 ~g~l~alda~tG~~~ 151 (573)
T d1kb0a2 137 DGRLIALDAATGKEV 151 (573)
T ss_dssp TSEEEEEETTTCCEE
T ss_pred ccceeeeccccccce
Confidence 467888888888753
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.86 E-value=8.7 Score=30.42 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=45.6
Q ss_pred ceeEEEcCCCCE-EEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 82 PESLEFDGLGRG-PYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 82 PE~ia~D~~G~~-~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
=.+++|.+++.. +.++..+|.|..|+........ .. . ......+....++|.++.+.
T Consensus 162 v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~-~~---------~------------~~~~~~~~v~~v~~~pd~~~ 219 (325)
T d1pgua1 162 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA-SD---------R------------THHKQGSFVRDVEFSPDSGE 219 (325)
T ss_dssp EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE-EE---------C------------SSSCTTCCEEEEEECSTTCC
T ss_pred cccccccccccceEEEeecccccccccccccccce-ec---------c------------cccCCCCccEEeeeccccce
Confidence 356889887653 5667789999888865431110 00 0 01112233468899986567
Q ss_pred EEEEeCCCc-eEEEECCCCe
Q 039124 161 LYIADAYYG-LLVVGSKGGL 179 (259)
Q Consensus 161 L~VaD~~~G-l~~v~~~gg~ 179 (259)
++++-...| |...|.++++
T Consensus 220 ~l~s~~~d~~i~iwd~~~~~ 239 (325)
T d1pgua1 220 FVITVGSDRKISCFDGKSGE 239 (325)
T ss_dssp EEEEEETTCCEEEEETTTCC
T ss_pred eccccccccceeeeeecccc
Confidence 777544444 6677887775
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.05 E-value=8 Score=29.42 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=27.0
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~ 111 (259)
...+++|+++|..++++..+|.|..|+....
T Consensus 164 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~ 194 (287)
T d1pgua2 164 KPSYISISPSETYIAAGDVMGKILLYDLQSR 194 (287)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred ceeEEEeccCccccccccccccccceeeccc
Confidence 3568999999999999999999999998665
|