Citrus Sinensis ID: 039126

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
Protein Sequence
WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNVVQGIINNAQLKLQLPTSNLKTQAIIIIVLKYNNSAQSNVNRDVREPT
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEcccccccccccccccccccccEEEccccccccccccccccccEEEEcccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccccHHHHHcccccccEEEEcccccccHHHHHHHHHHcHHcEEcccccccccccEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHEEEccccccHHHccccccccHcccEEEccccccHccccccccccccHEEEcccccccccccccHHHHHHHHEEEccccccccEccccccHHHHHEEcccccHHHcccccccHcHHEEEccccccEEccccHHHcccccEEEccccccHHccccHHHHHHHccEEEccccccHccccHHHHHcccccccEEcccccccccEccccccccHHcccccEEEEccccccccHHHHHHHHHHccccEEccccccccHcccccEEEccccccccccccccccc
Coil and Loop (DISEMBL)
whgcpfkslssiirpknlvspeiprnSIKQLWKVVQRLVNLKsinlnhsehlteipslslatnleslNFQRYTSLLETHSSIRHLNKFVARNLKhcrsltnlstsiHLESLKKLILSGCSNLMSFPELFYNIKelsldgtainelpSSIEYLSKLVILNlgnssrleglpskicklkslqhlnlsccsnlesfpnelrnlfpcdlydieaHWCSSLETLSGLSIIFTKIsrntqsfdFINCFKLHQNVVQGIINNAqlklqlptsnlkTQAIIIIVLKYNnsaqsnvnrdvrept
Flexible Loop (DISEMBL)
whgcpfkslssiirpknlvspeiprNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNVVQGIINNAQLKLQLPTSNLKTQAIIIIVLkynnsaqsnvnrdvrept
Low Complexity Region (SEG)
WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNVVQGIINNAQLKLQLPTSNLKTQAIIIIVLKYNNSAQSNVNRDVREPT
Disordered region (IsUnstruct)
*****************LV**EIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNVVQGIINNAQLKLQLPTSNLKTQAIIIIVLKYN***************
Disordered Region (DISOPRED)
WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNVVQGIINNAQLKLQLPTSNLKTQAIIIIVLKYNNSAQS*VN****EP*
Disordered Region (DISEMBL)
WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNVVQGIINNAQLKLQLPTSNLKTQAIIIIVLKYNNSAQSNVNRDVREPT
Disordered Region (DISPRO)
WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNVVQGIINNAQLKLQLPTSNLKTQAIIIIVLKYNNSAQSNVN*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNVVQGIINNAQLKLQLPTSNLKTQAIIIIVLKYNNSAQSNVNRDVREPT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	295	2.2.26 [Sep-21-2011]
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.677	0.105	0.447	2e-32
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.644	0.146	0.418	3e-28
O82500	1095	Putative disease resistan	no	no	0.816	0.220	0.327	2e-25
Q40392	1144	TMV resistance protein N	N/A	no	0.684	0.176	0.357	5e-25
Q9FL92	1372	Probable WRKY transcripti	no	no	0.762	0.163	0.287	8e-17
Q9FH83	1288	Probable WRKY transcripti	no	no	0.650	0.149	0.302	5e-14
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.762	0.139	0.258	2e-13
P23799	630	Putative adenylate cyclas	N/A	no	0.837	0.392	0.246	4e-07
P26337	630	Putative adenylate cyclas	N/A	no	0.837	0.392	0.246	9e-07
P0CB16	1201	Putative disease resistan	no	no	0.403	0.099	0.292	4e-06

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score =  139 bits (350), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/208 (44%), Positives = 124/208 (59%), Gaps = 8/208 (3%)

Query: 1    WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQR--------LVNLKSINLNHSEHL 52
            W   P  SL     P+NLV   +P +  K+LWK  +         L  LK + L++S+ L
Sbjct: 1212 WEYYPLSSLPKSFNPENLVELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRLSYSDQL 1271

Query: 53   TEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLK 112
            T+IP LS ATNLE ++ +   SLL    SI +L K V  NLK C  L N+ + + LESL+
Sbjct: 1272 TKIPRLSSATNLEHIDLEGCNSLLSLSQSISYLKKLVFLNLKGCSKLENIPSMVDLESLE 1331

Query: 113  KLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSK 172
             L LSGCS L +FPE+  N+KEL + GT I E+PSSI+ L  L  L+L NS  L+ LP+ 
Sbjct: 1332 VLNLSGCSKLGNFPEISPNVKELYMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPTS 1391

Query: 173  ICKLKSLQHLNLSCCSNLESFPNELRNL 200
            I KLK L+ LNLS C +LE FP+  R +
Sbjct: 1392 IYKLKHLETLNLSGCISLERFPDSSRRM 1419

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.
Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  125 bits (315), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/191 (41%), Positives = 116/191 (60%), Gaps = 1/191 (0%)

Query: 4   CPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATN 63
           C  + +    RP+ L    +     ++LW+ +Q L +L+ ++L+ SE+LTEIP LS AT 
Sbjct: 738 CLTRCMPCEFRPEQLAFLNVRGYKHEKLWEGIQSLGSLEGMDLSESENLTEIPDLSKATK 797

Query: 64  LESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLM 123
           LESL      SL+   S+I +L++ V   +K C  L  L T ++L SL+ L LSGCS+L 
Sbjct: 798 LESLILNNCKSLVTLPSTIGNLHRLVRLEMKECTGLEVLPTDVNLSSLETLDLSGCSSLR 857

Query: 124 SFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLN 183
           SFP +  NI  L L+ TAI E+PS+I  L +LV L +   + LE LP+ +  L SL+ L+
Sbjct: 858 SFPLISTNIVWLYLENTAIEEIPSTIGNLHRLVRLEMKKCTGLEVLPTDV-NLSSLETLD 916

Query: 184 LSCCSNLESFP 194
           LS CS+L SFP
Sbjct: 917 LSGCSSLRSFP 927

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/272 (32%), Positives = 133/272 (48%), Gaps = 31/272 (11%)

Query: 1   WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
           W   P +   S  RP+ LV   +  + +K+LW  VQ L NL+++NLN S +L  +P+L  
Sbjct: 593 WDAYPLEFFPSSFRPECLVELNMSHSKLKKLWSGVQPLRNLRTMNLNSSRNLEILPNLME 652

Query: 61  ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
           AT L  L+     SL+E  SSI++L   +   +  C+ L  + T+I+L SL+ L    C+
Sbjct: 653 ATKLNRLDLGWCESLVELPSSIKNLQHLILLEMSCCKKLEIIPTNINLPSLEVLHFRYCT 712

Query: 121 NLMSFPELFYNIKELSLDGTAINELPSSIEYLSK--------------------LVILNL 160
            L +FPE+  NI+ L+L GTAI E+P S++Y SK                    L  L L
Sbjct: 713 RLQTFPEISTNIRLLNLIGTAITEVPPSVKYWSKIDEICMERAKVKRLVHVPYVLEKLCL 772

Query: 161 GNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLS 220
             +  LE +P  +  L  LQ +++S C N+ S P       P  +  + A  C SL+ L 
Sbjct: 773 RENKELETIPRYLKYLPRLQMIDISYCINIISLPK-----LPGSVSALTAVNCESLQILH 827

Query: 221 GLSIIFTKISRNTQSFDFINCFKLHQNVVQGI 252
           G           +   +FINC KL Q   + I
Sbjct: 828 G------HFRNKSIHLNFINCLKLGQRAQEKI 853

Arabidopsis thaliana (taxid: 3702)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  115 bits (287), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/207 (35%), Positives = 117/207 (56%), Gaps = 5/207 (2%)

Query: 5   PFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNL 64
           P++S  S    K LV  ++  NS++ LW   + L +L+ I+L+ S+ LT  P  +   NL
Sbjct: 585 PWESFPSTFELKMLVHLQLRHNSLRHLWTETKHLPSLRRIDLSWSKRLTRTPDFTGMPNL 644

Query: 65  ESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMS 124
           E +N  + ++L E H S+   +K +   L  C+SL      +++ESL+ L L  C +L  
Sbjct: 645 EYVNLYQCSNLEEVHHSLGCCSKVIGLYLNDCKSLKRFPC-VNVESLEYLGLRSCDSLEK 703

Query: 125 FPELFYNIK---ELSLDGTAINELPSSI-EYLSKLVILNLGNSSRLEGLPSKICKLKSLQ 180
            PE++  +K   ++ + G+ I ELPSSI +Y + +  L L N   L  LPS IC+LKSL 
Sbjct: 704 LPEIYGRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLV 763

Query: 181 HLNLSCCSNLESFPNELRNLFPCDLYD 207
            L++S CS LES P E+ +L    ++D
Sbjct: 764 SLSVSGCSKLESLPEEIGDLDNLRVFD 790

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 128/313 (40%), Gaps = 88/313 (28%)

Query: 1   WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
           W   P + L     P +LV   +P + +K+LW   + L  LK+I L HS+ L +I  L  
Sbjct: 554 WENYPLQFLPQNFDPIHLVEINMPYSQLKKLWGGTKDLEMLKTIRLCHSQQLVDIDDLLK 613

Query: 61  ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
           A NLE ++ Q                         C  L +   +  L  L+ + LSGC+
Sbjct: 614 AQNLEVVDLQ------------------------GCTRLQSFPATGQLLHLRVVNLSGCT 649

Query: 121 NLMSFPELFYNIKELSLDGTAINELPSSI------EYL---------------------- 152
            + SFPE+  NI+ L+L GT I ELP SI      E L                      
Sbjct: 650 EIKSFPEIPPNIETLNLQGTGIIELPLSIVKPNYRELLNLLAEIPGLSGVSNLEQSDLKP 709

Query: 153 --------------SKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLES---FPN 195
                          KL  L L + SRL  LP+ +  L+ L+ L+LS CS LE+   FP 
Sbjct: 710 LTSLMKISTSYQNPGKLSCLELNDCSRLRSLPNMV-NLELLKALDLSGCSELETIQGFPR 768

Query: 196 ELRNLF------------PCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFK 243
            L+ L+            P  L    AH C SL++   + + F K+  +   + F NCF 
Sbjct: 769 NLKELYLVGTAVRQVPQLPQSLEFFNAHGCVSLKS---IRLDFKKLPVH---YTFSNCFD 822

Query: 244 LHQNVVQGIINNA 256
           L   VV   +  A
Sbjct: 823 LSPQVVNDFLVQA 835

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score = 78.6 bits (192), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 105/235 (44%), Gaps = 43/235 (18%)

Query: 1   WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
           W   P KSL     P++LV   +P + +++LW   + L  L++I L HS HL +I  L  
Sbjct: 561 WENYPLKSLPQNFDPRHLVEINMPYSQLQKLWGGTKNLEMLRTIRLCHSHHLVDIDDLLK 620

Query: 61  ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
           A NLE ++ Q                         C  L N   +  L  L+ + LSGC 
Sbjct: 621 AENLEVIDLQ------------------------GCTRLQNFPAAGRLLRLRVVNLSGCI 656

Query: 121 NLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQ 180
            + S  E+  NI++L L GT I  LP S    +   ++N    + + GL  ++ +L SL 
Sbjct: 657 KIKSVLEIPPNIEKLHLQGTGILALPVSTVKPNHRELVNF--LTEIPGLSEELERLTSLL 714

Query: 181 HLNLSC-------------CSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGL 222
             N SC             CS L+S PN + NL   DL  ++   CSSL ++ G 
Sbjct: 715 ESNSSCQDLGKLICLELKDCSCLQSLPN-MANL---DLNVLDLSGCSSLNSIQGF 765

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 125/313 (39%), Gaps = 88/313 (28%)

Query: 1   WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
           W   P +SL       +LV   +P + + +L   V+ LV LK + L+HS  L E   L  
Sbjct: 578 WENYPLQSLPQDFDFGHLVKLSMPYSQLHKLGTRVKDLVMLKRLILSHSLQLVECDILIY 637

Query: 61  ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
           A N+E ++ Q                         C  L     +  L++L+ + LSGC+
Sbjct: 638 AQNIELIDLQ------------------------GCTGLQRFPDTSQLQNLRVVNLSGCT 673

Query: 121 NLMSFPELFYNIKELSLDGTAINELP------------------------SSIEY----- 151
            +  F  +  NI+EL L GT I E+P                        S +E+     
Sbjct: 674 EIKCFSGVPPNIEELHLQGTRIREIPIFNATHPPKVKLDRKKLWNLLENFSDVEHIDLEC 733

Query: 152 -------------LSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLE---SFPN 195
                        + KLV LN+   S L GLP  +  L+SL+ L LS CS LE    FP 
Sbjct: 734 VTNLATVTSNNHVMGKLVCLNMKYCSNLRGLPDMV-SLESLKVLYLSGCSELEKIMGFPR 792

Query: 196 ELRNLF------------PCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFK 243
            L+ L+            P  L  + AH C  L++   +++ F ++ R+   F F NC++
Sbjct: 793 NLKKLYVGGTAIRELPQLPNSLEFLNAHGCKHLKS---INLDFEQLPRH---FIFSNCYR 846

Query: 244 LHQNVVQGIINNA 256
               V+   +   
Sbjct: 847 FSSQVIAEFVEKG 859

Arabidopsis thaliana (taxid: 3702)

>sp|P23799|ESAG8_TRYBB Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei brucei GN=ESAG8 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 115/276 (41%), Gaps = 29/276 (10%)

Query: 6   FKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLE 65
           FK L+ + R  NL    +           V  L NLK ++++  E L     L    NLE
Sbjct: 337 FKDLNGLERLVNLEKLNLSGCHGVSSLGFVANLSNLKELDISGCESLVCFDGLQDLNNLE 396

Query: 66  SLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSF 125
            L  +   S      +I++L+K    +L  C  +T+LS    L+ L++L L GC  +MSF
Sbjct: 397 VLYLRDVKSFTNV-GAIKNLSKMRELDLSGCERITSLSGLETLKGLEELSLEGCGEIMSF 455

Query: 126 PELF--YNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLN 183
             ++  Y+++ L +      E  S ++ L+ L  + L    +       I  L+++  L 
Sbjct: 456 DPIWSLYHLRVLYVSECGNLEDLSGLQCLTGLEEMYLHGCRKCTNF-GPIWNLRNVCVLE 514

Query: 184 LSCCSNLESFPN-------ELRNLFPCD-------------LYDIEAHWCSSLETLSGLS 223
           LSCC NL+           E   L  C+             L  +   WC++L+ L GL 
Sbjct: 515 LSCCENLDDLSGLQCLTGLEELYLIGCEEITTIGVVGNLRNLKCLSTCWCANLKELGGLE 574

Query: 224 IIFTKISRNTQSFDFINCFKLHQNVVQGIINNAQLK 259
            +      N +  D   C  L  +V   +++  +L+
Sbjct: 575 RLV-----NLEKLDLSGCCGLSSSVFMELMSLPKLQ 605

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma brucei brucei (taxid: 5702)

>sp|P26337|ESA8C_TRYEQ Putative adenylate cyclase regulatory protein OS=Trypanosoma equiperdum GN=ESAG8C PE=2 SV=1

 Score = 54.7 bits (130), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 115/276 (41%), Gaps = 29/276 (10%)

Query: 6   FKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLE 65
           FK L+ + R  NL    +           V  L NLK ++++  E L     L    NLE
Sbjct: 337 FKDLNGLERLVNLDKLNLSGCHGVSSLGFVANLSNLKELDISGCESLVCFDGLQDLNNLE 396

Query: 66  SLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSF 125
            L  +   S      +I++L+K    +L  C  +T+LS    L+ L++L L GC  +MSF
Sbjct: 397 VLYLRDVKSFTNV-GAIKNLSKMRELDLSGCERITSLSGLETLKGLEELSLEGCGEIMSF 455

Query: 126 PELF--YNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLN 183
             ++  ++++ L +      E  S +E ++ L  L L    +       I  L+++  + 
Sbjct: 456 DPIWSLHHLRVLYVSECGNLEDLSGLEGITGLEELYLHGCRKCTNF-GPIWNLRNVCVVE 514

Query: 184 LSCCSNLESFPN-------ELRNLFPCD-------------LYDIEAHWCSSLETLSGLS 223
           LSCC NLE           E   L  C+             L  +   WC++L+ L GL 
Sbjct: 515 LSCCENLEDLSGLQCLTGLEELYLIGCEEITPIGVVGNLRNLKCLSTCWCANLKELGGLD 574

Query: 224 IIFTKISRNTQSFDFINCFKLHQNVVQGIINNAQLK 259
            +      N +  D   C  L  +V   +++  +L+
Sbjct: 575 RLV-----NLEKLDLSGCCGLSSSVFMELMSLPKLQ 605

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma equiperdum (taxid: 5694)

>sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 81  SIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFY----NIKELS 136
           S+  L K     ++ C  + N+     L+ L  L +SG S+L++ P+ F+     ++ L+
Sbjct: 463 SLSKLKKLRVLVIRDCDLIDNIDKLSGLQGLHVLEVSGASSLVNIPDDFFKNMTQLQSLN 522

Query: 137 LDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNE 196
           L G AI   PS+IE LS L    L + S L+ LP+ I + + L+ +++     LES+ + 
Sbjct: 523 LSGLAIKSSPSTIEKLSMLRCFILRHCSELQDLPNFIVETRKLEVIDIHGARKLESYFDR 582

Query: 197 LRN 199
           +++
Sbjct: 583 VKD 585

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
359496026	1250	PREDICTED: TMV resistance protein N-like	0.677	0.16	0.502	2e-40
297804200	1046	predicted protein [Arabidopsis lyrata su	0.888	0.250	0.375	3e-38
225460354	1174	PREDICTED: TMV resistance protein N-like	0.677	0.170	0.463	9e-38
296089535	688	unnamed protein product [Vitis vinifera]	0.677	0.290	0.463	1e-37
297744796	596	unnamed protein product [Vitis vinifera]	0.677	0.335	0.463	1e-37
359493487	1162	PREDICTED: TMV resistance protein N-like	0.677	0.172	0.467	3e-37
296089531	696	unnamed protein product [Vitis vinifera]	0.677	0.287	0.463	3e-37
359493483	1274	PREDICTED: TMV resistance protein N-like	0.677	0.156	0.472	6e-37
147768286	1206	hypothetical protein VITISV_033530 [Viti	0.677	0.165	0.453	3e-36
451798988	1219	TMV resistance protein N-like protein 6	0.677	0.164	0.463	1e-35

>gi|359496026|ref|XP_002277166.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/203 (50%), Positives = 128/203 (63%), Gaps = 3/203 (1%)

Query: 1   WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
           WH  P KSL S   PKNLV   +    +++LWK V+ +  L+ I+L+HS++L   P  S 
Sbjct: 612 WHRYPLKSLPSNFHPKNLVELNLCCCYVEELWKGVKHMEKLECIDLSHSQYLVRTPDFSG 671

Query: 61  ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
             NLE L F+  T L E H S+  L+K +  NLK C++L    +SI LESLK LILSGCS
Sbjct: 672 IPNLERLIFEGCTDLREVHQSLGVLSKLIFLNLKDCKNLQCFPSSIELESLKVLILSGCS 731

Query: 121 NLMSFPELFYNI---KELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLK 177
            L +FPE+  N+   +EL LDGTAI ELP S+E+L+ LV+LNL N  RL  LPS IC LK
Sbjct: 732 KLDNFPEILENMEGLRELFLDGTAIKELPLSVEHLNGLVLLNLRNCERLITLPSSICNLK 791

Query: 178 SLQHLNLSCCSNLESFPNELRNL 200
           SL  L LS CS LE  P  L NL
Sbjct: 792 SLSTLTLSGCSQLEKLPENLGNL 814

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804200|ref|XP_002869984.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297315820|gb|EFH46243.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/298 (37%), Positives = 159/298 (53%), Gaps = 36/298 (12%)

Query: 1   WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
           W G P++ L S   P+ LV   +  + IKQLW+  ++  NL+ ++L+ S+ L  +  LS 
Sbjct: 588 WQGYPYEYLPSEFNPEELVDLSLRYSYIKQLWEDDKKTENLRWVDLSQSKDLRSLSGLSK 647

Query: 61  ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
           A NLE L+ +  TSL+   SSI  +NK +  NL+ C SL +L   I+L+SLK LILSGCS
Sbjct: 648 AKNLERLDLEGCTSLVLLGSSIEKMNKLIYLNLRDCTSLESLPEGINLKSLKTLILSGCS 707

Query: 121 NLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQ 180
           NL  F  +  NI+ L L+G+AI ++   IE L  L++LNL N  RL+ LP+ + KLKSLQ
Sbjct: 708 NLQEFQIISDNIESLYLEGSAIEQVVEHIESLRNLILLNLKNCRRLKYLPNDLYKLKSLQ 767

Query: 181 HLNLSCCSNLESFP----------------------------NELRNLFPC--------D 204
            L LS CS LES P                            + L+    C         
Sbjct: 768 ELILSGCSALESLPPIKEEMECLEILLMDGTSIKQTPETICLSNLKMFSFCGSSIEDSTG 827

Query: 205 LYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNVVQGIINNAQLKLQL 262
           L+ ++AH C SLE ++    +     R   +F F NCFKL++   + I+  AQLK QL
Sbjct: 828 LHYVDAHGCVSLEKVAEPVTLPLVTDRMHTTFIFTNCFKLNRAEQEAIVAQAQLKSQL 885

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460354|ref|XP_002263146.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  163 bits (412), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 94/203 (46%), Positives = 127/203 (62%), Gaps = 3/203 (1%)

Query: 1   WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
           WH  P KSL S   PK LV   +  + ++QLWK  +    LK I L+HS++LT  P  S 
Sbjct: 590 WHEYPLKSLPSNFHPKKLVELNMCSSRLEQLWKGDKSFEKLKFIKLSHSQYLTRTPDFSG 649

Query: 61  ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
           A NLE L  +  TS+++ H SI  L K +  NL+ C++L + ++SIH+ SL+ L LSGCS
Sbjct: 650 APNLERLILEGCTSMVKVHPSIGALQKLIFLNLEGCKNLKSFASSIHMNSLQILTLSGCS 709

Query: 121 NLMSFPELFYNIK---ELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLK 177
            L  FPE+  N+K   +L LD TA+ ELPSSI  L+ LV+LNL N  +L  LP  +CKL 
Sbjct: 710 KLKKFPEMLENMKSLRQLLLDETALRELPSSIGRLNGLVLLNLTNCKKLVSLPQSLCKLT 769

Query: 178 SLQHLNLSCCSNLESFPNELRNL 200
           SLQ L L+ CS L+  P+EL +L
Sbjct: 770 SLQILTLAGCSELKKLPDELGSL 792

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089535|emb|CBI39354.3| unnamed protein product [Vitis vinifera]

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/203 (46%), Positives = 123/203 (60%), Gaps = 3/203 (1%)

Query: 1   WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
           WHG P KS  S   P+ LV   +  + +KQLW+  +    LKSI L+HS+HLT+ P  S 
Sbjct: 442 WHGYPLKSFPSNFHPEKLVELNMCFSRLKQLWEGKKGFEKLKSIKLSHSQHLTKTPDFSG 501

Query: 61  ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
             NL  L  +  TSL+E H SI  L K +  NL+ C+ L + S+SIH+ESL+ L LSGCS
Sbjct: 502 VPNLRRLILKGCTSLVEVHPSIGALKKLIFLNLEGCKKLKSFSSSIHMESLQILTLSGCS 561

Query: 121 NLMSFPELFYNIK---ELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLK 177
            L  FPE+  N++   EL LDG+ I ELPSSI  L+ LV LNL N  +L  LP   C+L 
Sbjct: 562 KLKKFPEIQENMESLMELFLDGSGIIELPSSIGCLNGLVFLNLKNCKKLASLPQSFCELT 621

Query: 178 SLQHLNLSCCSNLESFPNELRNL 200
           SL  L L  CS L+  P++L +L
Sbjct: 622 SLGTLTLCGCSELKELPDDLGSL 644

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744796|emb|CBI38064.3| unnamed protein product [Vitis vinifera]

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/203 (46%), Positives = 127/203 (62%), Gaps = 3/203 (1%)

Query: 1   WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
           WH  P KSL S   PK LV   +  + ++QLWK  +    LK I L+HS++LT  P  S 
Sbjct: 189 WHEYPLKSLPSNFHPKKLVELNMCSSRLEQLWKGDKSFEKLKFIKLSHSQYLTRTPDFSG 248

Query: 61  ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
           A NLE L  +  TS+++ H SI  L K +  NL+ C++L + ++SIH+ SL+ L LSGCS
Sbjct: 249 APNLERLILEGCTSMVKVHPSIGALQKLIFLNLEGCKNLKSFASSIHMNSLQILTLSGCS 308

Query: 121 NLMSFPELFYNIK---ELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLK 177
            L  FPE+  N+K   +L LD TA+ ELPSSI  L+ LV+LNL N  +L  LP  +CKL 
Sbjct: 309 KLKKFPEMLENMKSLRQLLLDETALRELPSSIGRLNGLVLLNLTNCKKLVSLPQSLCKLT 368

Query: 178 SLQHLNLSCCSNLESFPNELRNL 200
           SLQ L L+ CS L+  P+EL +L
Sbjct: 369 SLQILTLAGCSELKKLPDELGSL 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493487|ref|XP_003634612.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/203 (46%), Positives = 124/203 (61%), Gaps = 3/203 (1%)

Query: 1   WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
           WHG P KS  S   P+ LV   +  + +KQLW+  +    LKSI L+HS+HLT+ P  S 
Sbjct: 622 WHGYPLKSFPSNFHPEKLVELNMCFSRLKQLWEGKKGFEKLKSIKLSHSQHLTKTPDFSG 681

Query: 61  ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
             NL  L  +  TSL+E H SI  L K +  NL+ C+ L + S+SIH+ESL+ L LSGCS
Sbjct: 682 VPNLRRLILKGCTSLVEVHPSIGALKKLIFLNLEGCKKLKSFSSSIHMESLQILTLSGCS 741

Query: 121 NLMSFPELFYNIKE---LSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLK 177
            L  FPE+  N++    LSL+GTAI  LP SIE L+ L +LNL     LE LP  I KLK
Sbjct: 742 KLKKFPEVQGNMEHLPNLSLEGTAIKGLPLSIENLTGLALLNLKECKSLESLPRSIFKLK 801

Query: 178 SLQHLNLSCCSNLESFPNELRNL 200
           SL+ L L  CS L+  P++L +L
Sbjct: 802 SLKTLTLCGCSELKELPDDLGSL 824

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089531|emb|CBI39350.3| unnamed protein product [Vitis vinifera]

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/203 (46%), Positives = 123/203 (60%), Gaps = 3/203 (1%)

Query: 1   WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
           WHG P KS  S   P+ LV   +  + +KQ W+  +    LKSI L+HS+HLT+IP  S 
Sbjct: 482 WHGYPLKSFPSNFHPEKLVELNMCFSRLKQPWEGKKGFEKLKSIKLSHSQHLTKIPDFSG 541

Query: 61  ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
             NL  L  +  TSL+E H SI  L K +  NL+ C+ L + S+SIH+ESL+ L LSGCS
Sbjct: 542 VPNLRRLILKGCTSLVEVHPSIGALKKLIFLNLEGCKKLKSFSSSIHMESLQILTLSGCS 601

Query: 121 NLMSFPELFYNIK---ELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLK 177
            L  FPE+  N++   EL LDG+ I ELPSSI  L+ LV LNL N  +L  LP   C+L 
Sbjct: 602 KLKKFPEIQENMESLMELFLDGSGIIELPSSIGCLNGLVFLNLKNCKKLASLPQSFCELT 661

Query: 178 SLQHLNLSCCSNLESFPNELRNL 200
           SL+ L L  CS L+  P+ L +L
Sbjct: 662 SLRTLTLCGCSELKDLPDNLGSL 684

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493483|ref|XP_003634610.1| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 96/203 (47%), Positives = 124/203 (61%), Gaps = 3/203 (1%)

Query: 1   WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
           WHG P KS  S   P+ LV   +  + +KQ W+  +    LKSI L+HS+HLT+IP  S 
Sbjct: 616 WHGYPLKSFPSNFHPEKLVELNMCFSRLKQPWEGKKGFEKLKSIKLSHSQHLTKIPDFSG 675

Query: 61  ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
             NL  L  +  TSL+E H SI  L K +  NL+ C+ L + S+SIH+ESL+ L LSGCS
Sbjct: 676 VPNLRRLILKGCTSLVEVHPSIGALKKLIFLNLEGCKKLKSFSSSIHMESLQILTLSGCS 735

Query: 121 NLMSFPELFYNIKE---LSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLK 177
            L  FPE+  N++    LSL+GTAI  LP SIE L+ L +LNL     LE LP  I KLK
Sbjct: 736 KLKKFPEVQGNMEHLPNLSLEGTAIKGLPLSIENLTGLALLNLKECKSLESLPRSIFKLK 795

Query: 178 SLQHLNLSCCSNLESFPNELRNL 200
           SL+ L LS CS L+  P+ L +L
Sbjct: 796 SLKTLILSGCSELKDLPDNLGSL 818

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768286|emb|CAN64759.1| hypothetical protein VITISV_033530 [Vitis vinifera]

 Score =  158 bits (399), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 124/203 (61%), Gaps = 3/203 (1%)

Query: 1   WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
           WH  P KSL S   PK LV   +  + ++ LWK  +    LK I L+HS++LT  P  S 
Sbjct: 631 WHEYPLKSLPSNFHPKKLVELNMCSSRLEXLWKGDKSFEKLKFIKLSHSQYLTRTPDFSG 690

Query: 61  ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
           A NLE L  +   S+++ H SI  L K +  NL  C++L + ++SIH+ SL+ L LSGCS
Sbjct: 691 APNLERLILEGCKSMVKVHPSIGALQKLIFLNLXGCKNLKSFASSIHMNSLQILTLSGCS 750

Query: 121 NLMSFPELFYNIK---ELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLK 177
            L  FPE+  N+K   +L LD TA+ ELPSSI  L+ LV+LNL N  +L  LP  +CKL 
Sbjct: 751 KLKKFPEMLENMKSLRQLLLDETALRELPSSIGRLNGLVLLNLTNCKKLVSLPQSLCKLT 810

Query: 178 SLQHLNLSCCSNLESFPNELRNL 200
           SLQ L L+ CS L+  P+EL +L
Sbjct: 811 SLQILTLAGCSELKKLPDELGSL 833

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798988|gb|AGF69192.1| TMV resistance protein N-like protein 6 [Vitis labrusca]

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/203 (46%), Positives = 122/203 (60%), Gaps = 3/203 (1%)

Query: 1   WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
           WHG P KS  S   P+ LV   +  + +KQLW+  +    LKSI L+HS+HLT+ P  S 
Sbjct: 608 WHGYPLKSFPSNFHPEKLVELNMCFSRLKQLWEGKKGFEKLKSIKLSHSQHLTKTPDFSG 667

Query: 61  ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
             NL  L  +  TSL+E H SI  L K +  NL+ C+ L + S+SIH+ESL+ L LSGCS
Sbjct: 668 VPNLRRLILKGCTSLVEVHPSIGALKKLIFLNLEGCKKLKSFSSSIHMESLQILTLSGCS 727

Query: 121 NLMSFPELFYNIKE---LSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLK 177
            L  FPE+  N++    LSL+GTAI  LP SIE L+ L +LNL     LE LP  I KLK
Sbjct: 728 KLKKFPEVQGNMEHLPNLSLEGTAIKGLPLSIENLTGLALLNLKECKSLESLPRSIFKLK 787

Query: 178 SLQHLNLSCCSNLESFPNELRNL 200
           SL+ L LS C+ L+  P    N+
Sbjct: 788 SLKTLILSNCTRLKKLPEIQENM 810

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
TAIR|locus:2118116	1895	WRKY19 [Arabidopsis thaliana (	0.783	0.121	0.423	2.8e-36
TAIR|locus:2155322	1170	LAZ5 "LAZARUS 5" [Arabidopsis	0.884	0.223	0.367	1.4e-34
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.657	0.159	0.432	4e-34
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.749	0.170	0.390	1.1e-32
TAIR|locus:2153072	1229	AT5G51630 [Arabidopsis thalian	0.654	0.157	0.409	5.6e-32
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.654	0.159	0.412	7.6e-32
TAIR|locus:2170333	1197	CSA1 "constitutive shade-avoid	0.955	0.235	0.333	3.8e-31
TAIR|locus:2175075	1068	AT5G41750 [Arabidopsis thalian	0.830	0.229	0.339	2.2e-30
TAIR|locus:2130270	1449	RPP5 "RECOGNITION OF PERONOSPO	0.732	0.149	0.377	6.8e-30
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.674	0.157	0.4	7.9e-30

TAIR|locus:2118116 WRKY19 [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 2.8e-36, P = 2.8e-36
 Identities = 105/248 (42%), Positives = 141/248 (56%)

Query:     1 WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWK--------VVQRLVNLKSINLNHSEHL 52
             W   P  SL     P+NLV   +P +  K+LWK            L  LK + L++S+ L
Sbjct:  1212 WEYYPLSSLPKSFNPENLVELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRLSYSDQL 1271

Query:    53 TEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLK 112
             T+IP LS ATNLE ++ +   SLL    SI +L K V  NLK C  L N+ + + LESL+
Sbjct:  1272 TKIPRLSSATNLEHIDLEGCNSLLSLSQSISYLKKLVFLNLKGCSKLENIPSMVDLESLE 1331

Query:   113 KLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSK 172
              L LSGCS L +FPE+  N+KEL + GT I E+PSSI+ L  L  L+L NS  L+ LP+ 
Sbjct:  1332 VLNLSGCSKLGNFPEISPNVKELYMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPTS 1391

Query:   173 ICKLKSLQHLNLSCCSNLESFPNELRNLFPC----DLY--DIEAHWCSSLETLSGLS-II 225
             I KLK L+ LNLS C +LE FP+  R +  C    DL   DI+    SS+  L+ L  ++
Sbjct:  1392 IYKLKHLETLNLSGCISLERFPDSSRRM-KCLRFLDLSRTDIK-ELPSSISYLTALDELL 1449

Query:   226 FTKISRNT 233
             F    RN+
Sbjct:  1450 FVDSRRNS 1457

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006952 "defense response" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2155322 LAZ5 "LAZARUS 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 1.4e-34, P = 1.4e-34
 Identities = 97/264 (36%), Positives = 147/264 (55%)

Query:     1 WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
             W   P++ L S   P+NLV  E+P +SIK++W+ V+    LK  NL++S  LT +  LS 
Sbjct:   663 WMKYPWEKLPSDFNPENLVDLELPYSSIKKVWEGVKDTPILKWANLSYSSKLTNLLGLSN 722

Query:    61 ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
             A NLE LN +  TSLL+    + ++   V  N++ C SLT L  SI + SLK LILS CS
Sbjct:   723 AKNLERLNLEGCTSLLKLPQEMENMKSLVFLNMRRCTSLTCLQ-SIKVSSLKILILSDCS 781

Query:   121 NLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQ 180
              L  F  +  N++EL LDGTAI  LP +   L++LV+LN+   + LE LP ++ K K+LQ
Sbjct:   782 KLEEFEVISENLEELYLDGTAIKGLPPAAGDLTRLVVLNMEGCTELESLPKRLGKQKALQ 841

Query:   181 HLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFIN 240
              L LS CS LES P +++++    L  ++      +  +  L  +   +SRN    +  +
Sbjct:   842 ELVLSGCSKLESVPTDVKDMKHLRLLLLDGTRIRKIPKIKSLKCLC--LSRNIAMVNLQD 899

Query:   241 CFKLHQNVVQGIINNAQLKLQLPT 264
               K   N+   ++ N +    LP+
Sbjct:   900 NLKDFSNLKCLVMKNCENLRYLPS 923

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 4.0e-34, P = 4.0e-34
 Identities = 84/194 (43%), Positives = 119/194 (61%)

Query:     1 WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
             WHG P +S+     PKNLV  ++P + ++++W   + +  LK ++L+HS +L +   L+ 
Sbjct:   605 WHGYPLQSIPLDFDPKNLVDLKLPHSQLEEIWDDEKDVGMLKWVDLSHSINLRQCLGLAN 664

Query:    61 ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
             A NLE LN +  TSL +  S+I  L K +  NL+ C SL +L   I  +SL+ LILSGCS
Sbjct:   665 AHNLERLNLEGCTSLKKLPSTINCLEKLIYLNLRDCTSLRSLPKGIKTQSLQTLILSGCS 724

Query:   121 NLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQ 180
             +L  FP +  N++ L LDGT I  LP SI+   +L +LNL N  +L+ L S + KLK LQ
Sbjct:   725 SLKKFPLISENVEVLLLDGTVIKSLPESIQTFRRLALLNLKNCKKLKHLSSDLYKLKCLQ 784

Query:   181 HLNLSCCSNLESFP 194
              L LS CS LE FP
Sbjct:   785 ELILSGCSQLEVFP 798

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 87/223 (39%), Positives = 129/223 (57%)

Query:     1 WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
             W G P K++ S   P+ LV   +  +++++LW  +Q L NLK ++L+  ++L E+P LS 
Sbjct:   587 WDGYPLKTMPSRFFPEFLVELCMSNSNLEKLWDGIQPLRNLKKMDLSRCKYLVEVPDLSK 646

Query:    61 ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
             ATNLE LN     SL+E   SI++L       L +C  L ++   I L+SL+ + +SGCS
Sbjct:   647 ATNLEELNLSYCQSLVEVTPSIKNLKGLSCFYLTNCIQLKDIPIGIILKSLETVGMSGCS 706

Query:   121 NLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQ 180
             +L  FPE+ +N + L L  T I ELPSSI  LS LV L++ +  RL  LPS +  L SL+
Sbjct:   707 SLKHFPEISWNTRRLYLSSTKIEELPSSISRLSCLVKLDMSDCQRLRTLPSYLGHLVSLK 766

Query:   181 HLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLS 223
              LNL  C  LE+ P+ L+NL    L  +E   C ++     +S
Sbjct:   767 SLNLDGCRRLENLPDTLQNL--TSLETLEVSGCLNVNEFPRVS 807

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 5.6e-32, P = 5.6e-32
 Identities = 79/193 (40%), Positives = 115/193 (59%)

Query:     1 WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
             W  CP KSL S  R ++LVS  +  + +++LW+  Q   NL +I+L+ SE L E P+LS 
Sbjct:   746 WDFCPLKSLPSNFRQEHLVSLHMTHSKLEKLWEGAQPFGNLVNIDLSLSEKLKEFPNLSK 805

Query:    61 ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
              TNL++L+     SL+   SSI+ L+K    N++ C  L  L T ++LESL  L LSGCS
Sbjct:   806 VTNLDTLDLYGCKSLVTVPSSIQSLSKLTELNMRRCTGLEALPTDVNLESLHTLDLSGCS 865

Query:   121 NLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQ 180
              L +FP++  NI+ L LD TAI E+PS I+   +L  L++    RL  + + IC+LK ++
Sbjct:   866 KLTTFPKISRNIERLLLDDTAIEEVPSWIDDFFELTTLSMKGCKRLRNISTSICELKCIE 925

Query:   181 HLNLSCCSNLESF 193
               N S C  L  F
Sbjct:   926 VANFSDCERLTEF 938

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.6e-32, Sum P(2) = 7.6e-32
 Identities = 80/194 (41%), Positives = 114/194 (58%)

Query:     1 WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
             W G P+  L S   PK LV   +  + IKQLW+  +   +L+ ++L  S+ L  +  LS 
Sbjct:   596 WQGYPYDCLPSDFDPKELVDLSLRYSHIKQLWEDEKNTESLRWVDLGQSKDLLNLSGLSR 655

Query:    61 ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
             A NLE L+ +  TSL +   S++ +N+ +  NL+ C SL +L     ++SLK LILSGC 
Sbjct:   656 AKNLERLDLEGCTSL-DLLGSVKQMNELIYLNLRDCTSLESLPKGFKIKSLKTLILSGCL 714

Query:   121 NLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQ 180
              L  F  +  +I+ L L+GTAI  +   IE L  L++LNL N  +L+ LP+ + KLKSLQ
Sbjct:   715 KLKDFHIISESIESLHLEGTAIERVVEHIESLHSLILLNLKNCEKLKYLPNDLYKLKSLQ 774

Query:   181 HLNLSCCSNLESFP 194
              L LS CS LES P
Sbjct:   775 ELVLSGCSALESLP 788

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170333 CSA1 "constitutive shade-avoidance1" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 3.8e-31, P = 3.8e-31
 Identities = 99/297 (33%), Positives = 152/297 (51%)

Query:     1 WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
             W   P K +     P NLV  ++P + I+++W+  +    LK +NLNHS+ L  +  L  
Sbjct:   622 WLKFPLKEVPQDFNPGNLVDLKLPYSEIERVWEDNKDAPKLKWVNLNHSKKLNTLAGLGK 681

Query:    61 ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
             A NL+ LN +  T+L E H  + ++   V  NL+ C SL +L   I L SLK LILSGCS
Sbjct:   682 AQNLQELNLEGCTALKEMHVDMENMKFLVFLNLRGCTSLKSLP-EIQLISLKTLILSGCS 740

Query:   121 NLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQ 180
                +F  +   ++ L LDGTAI ELP  I  L +LV+LN+    +L+ LP  + +LK+L+
Sbjct:   741 KFKTFQVISDKLEALYLDGTAIKELPCDIGRLQRLVMLNMKGCKKLKRLPDSLGQLKALE 800

Query:   181 HLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSL-ETLSGLSIIFTKISRNTQSFDFI 239
              L LS CS L  FP    N+   ++  ++      + + LS   +   K  + ++  D +
Sbjct:   801 ELILSGCSKLNEFPETWGNMSRLEILLLDETAIKDMPKILSVRRLCLNKNEKISRLPDLL 860

Query:   240 NCFK----LHQNVVQGIINNAQLKLQLP------TSNLKTQA---IIIIVLKYNNSA 283
             N F     LH    + + +  QL   L        S+LKT A   +  I +K+ NS+
Sbjct:   861 NKFSQLQWLHLKYCKNLTHVPQLPPNLQYLNVHGCSSLKTVAKPLVCSIPMKHVNSS 917

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2175075 AT5G41750 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 2.2e-30, P = 2.2e-30
 Identities = 93/274 (33%), Positives = 146/274 (53%)

Query:     1 WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
             W   P KSL     P++LV   +P + +K+LW  +Q L NLKSI+++ S  L EIP+LS 
Sbjct:   588 WQNYPRKSLPQRFNPEHLVKIRMPSSKLKKLWGGIQPLPNLKSIDMSFSYSLKEIPNLSK 647

Query:    61 ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
             ATNLE L+ +   SL+E   SI +L+K    N+++C  L  + T+I+L SL++L ++GCS
Sbjct:   648 ATNLEILSLEFCKSLVELPFSILNLHKLEILNVENCSMLKVIPTNINLASLERLDMTGCS 707

Query:   121 NLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGN------------------ 162
              L +FP++  NIK+L+L  T I ++P S+   S+L  L +G+                  
Sbjct:   708 ELRTFPDISSNIKKLNLGDTMIEDVPPSVGCWSRLDHLYIGSRSLKRLHVPPCITSLVLW 767

Query:   163 SSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGL 222
              S +E +P  I  L  L  LN++ C  L+S         P  L D++A+ C SL+     
Sbjct:   768 KSNIESIPESIIGLTRLDWLNVNSCRKLKSILG-----LPSSLQDLDANDCVSLKR---- 818

Query:   223 SIIFTKISRNTQSFDFINCFKLHQNVVQGIINNA 256
              + F+      ++  F NC  L +   +GII  +
Sbjct:   819 -VCFS-FHNPIRALSFNNCLNLDEEARKGIIQQS 850

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2130270 RPP5 "RECOGNITION OF PERONOSPORA PARASITICA 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
 Identities = 83/220 (37%), Positives = 123/220 (55%)

Query:     4 CPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATN 63
             C  + +    RP+ LV   +     ++LW+ +Q L +L+ ++L+ SE+LTEIP LS ATN
Sbjct:   881 CLMRCMPCEFRPEYLVFLNVRCYKHEKLWEGIQSLGSLEEMDLSESENLTEIPDLSKATN 940

Query:    64 LESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLM 123
             L+ L      SL+   S+I +L K V   +K C  L  L T ++L SL+ L LSGCS+L 
Sbjct:   941 LKHLYLNNCKSLVTLPSTIGNLQKLVRLEMKECTGLEVLPTDVNLSSLETLDLSGCSSLR 1000

Query:   124 SFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLN 183
             +FP +  +IK L L+ TAI E+   +   +KL  L L N   L  LPS I  L++L+ L 
Sbjct:  1001 TFPLISKSIKWLYLENTAIEEI-LDLSKATKLESLILNNCKSLVTLPSTIGNLQNLRRLY 1059

Query:   184 LSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLS 223
             +  C+ LE  P ++ NL    + D+    CSSL T   +S
Sbjct:  1060 MKRCTGLEVLPTDV-NLSSLGILDLSG--CSSLRTFPLIS 1096

GO:0000166 "nucleotide binding" evidence=IEA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 80/200 (40%), Positives = 115/200 (57%)

Query:     1 WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
             W   P K+L     PKNL+  ++P + I+Q+W+  +   NL+ ++LNHS  L  +  LS 
Sbjct:   624 WLKYPEKNLPINFDPKNLIDLKLPYSQIEQIWEEEKDTSNLQWLDLNHSSKLHSLSGLSR 683

Query:    61 ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
             A  L+S+N +  T L      ++++   +  NL+ C SL +L   I L  L+ LILS CS
Sbjct:   684 AQKLQSINLEGCTGLKTLPQVLQNMESLMFLNLRGCTSLESLP-DITLVGLRTLILSNCS 742

Query:   121 NLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQ 180
                 F  +  N++EL LDGTAI ELPS+I  L KL+ L L +   L  LP  I  LK++Q
Sbjct:   743 RFKEFKLIAKNLEELYLDGTAIKELPSTIGDLQKLISLKLKDCKNLLSLPDSIGNLKAIQ 802

Query:   181 HLNLSCCSNLESFPNELRNL 200
              + LS CS+LESFP   +NL
Sbjct:   803 EIILSGCSSLESFPEVNQNL 822

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	295
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-39
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-23

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  145 bits (368), Expect = 3e-39
 Identities = 93/253 (36%), Positives = 134/253 (52%), Gaps = 33/253 (13%)

Query: 1   WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
           W   P + + S  RP+NLV  ++  + +++LW  V  L  L++I+L  S++L EIP LS+
Sbjct: 596 WDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSM 655

Query: 61  ATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCS 120
           ATNLE+L     +SL+E  SSI++LNK    ++  C +L  L T I+L+SL +L LSGCS
Sbjct: 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS 715

Query: 121 NLMSFPELFYNIKELSLDGTAINELPSS--IEYLSKLVI--------------------- 157
            L SFP++  NI  L LD TAI E PS+  +E L +L++                     
Sbjct: 716 RLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTM 775

Query: 158 -------LNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEA 210
                  L L +   L  LPS I  L  L+HL +  C NLE+ P  + NL    L  ++ 
Sbjct: 776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLE--SLESLDL 832

Query: 211 HWCSSLETLSGLS 223
             CS L T   +S
Sbjct: 833 SGCSRLRTFPDIS 845

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  100 bits (250), Expect = 2e-23
 Identities = 73/241 (30%), Positives = 113/241 (46%), Gaps = 32/241 (13%)

Query: 9   LSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLN 68
             S +R +NL    +     ++LW+ VQ L  L ++               L+ +L  L 
Sbjct: 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTM---------------LSPSLTRLF 784

Query: 69  FQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPEL 128
                SL+E  SSI++L+K     +++C +L  L T I+LESL+ L LSGCS L +FP++
Sbjct: 785 LSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI 844

Query: 129 FYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCS 188
             NI +L+L  T I E+P  IE  S L  L++   + L+ +   I KLK L+ ++ S C 
Sbjct: 845 STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904

Query: 189 NLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNV 248
            L                  EA W  S   ++  +        +T   +FINCF L Q  
Sbjct: 905 ALT-----------------EASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEA 947

Query: 249 V 249
           +
Sbjct: 948 L 948

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	295
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.89
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.76
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.74
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.74
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.73
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.68
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.63
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.6
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.6
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.59
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.56
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.51
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.5
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.46
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.43
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.41
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.29
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.08
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.05
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.03
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.97
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.97
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.94
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.92
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.91
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.91
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.87
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.86
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.79
PLN03150	623	hypothetical protein; Provisional	98.78
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.77
PRK15386	426	type III secretion protein GogB; Provisional	98.73
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.62
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.6
PLN03150	623	hypothetical protein; Provisional	98.6
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.59
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.58
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.51
KOG4341	483	consensus F-box protein containing LRR [General fu	98.49
PRK15386	426	type III secretion protein GogB; Provisional	98.4
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.38
KOG4341	483	consensus F-box protein containing LRR [General fu	98.28
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.2
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.13
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.09
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.09
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.96
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.69
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.6
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.53
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.47
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.47
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.41
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.36
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.25
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.19
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.18
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.14
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.12
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.55
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.54
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.49
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.49
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.42
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.33
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.15
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.25
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.04
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.38
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	93.83
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.28
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.25
smart00370	26	LRR Leucine-rich repeats, outliers.	91.12
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.12
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.6
KOG0473	326	consensus Leucine-rich repeat protein [Function un	80.41

>PLN03210 Resistant to P

Probab=99.93  E-value=6.2e-25  Score=219.21  Aligned_cols=146  Identities=45%  Similarity=0.725  Sum_probs=130.5

Q ss_pred             CCCCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeecccccccccccc
Q 039126            1 WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHS   80 (295)
Q Consensus         1 ~~~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (295)
                      |++++++.+|..+.+.+|+.|+++++.+..+|.++..+++|+.|+++++.....+|.+..+++|++|++++|..+..+|.
T Consensus       596 ~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~  675 (1153)
T PLN03210        596 WDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPS  675 (1153)
T ss_pred             ecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccch
Confidence            78899999999999999999999999999999999999999999999998788899999999999999999999999999


Q ss_pred             chhcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccCcCCCCCceEEccCccccccc
Q 039126           81 SIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELP  146 (295)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~  146 (295)
                      .+..+++|+.|++++|..++.+|....+++|+.|++++|..++.+|....+|+.|++.++.+..+|
T Consensus       676 si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP  741 (1153)
T PLN03210        676 SIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFP  741 (1153)
T ss_pred             hhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccc
Confidence            999999999999999999999998878899999999998877777766666666666666655444

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.89  E-value=1.8e-22  Score=200.08  Aligned_cols=221  Identities=20%  Similarity=0.193  Sum_probs=111.3

Q ss_pred             CCCceeEecCCCCcc-ccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEc
Q 039126           15 PKNLVSPEIPRNSIK-QLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARN   92 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   92 (295)
                      +++|++|++++|.+. .+|..++.+++|++|++++|.+.+..| .+.++++|++|++++|.....+|..+..+++|+.|+
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            344444444444443 344455555555555555555555555 355555555555555544445555555555555555


Q ss_pred             cccCcCCceeCCcc-cCccccEEeccCCCCCcccCcCCC---CCceEEccCcccc-ccchhhhCCCCCcEEecCCCcCCc
Q 039126           93 LKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPELFY---NIKELSLDGTAIN-ELPSSIEYLSKLVILNLGNSSRLE  167 (295)
Q Consensus        93 l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~~~~~~  167 (295)
                      +++|.....+|..+ .+++|++|++++|...+.+|..++   +|++|++++|.+. .+|..++.+++|+.|++++|...+
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  298 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG  298 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence            55544333444333 255555555555554444444332   3445555555554 444555555555555555554444


Q ss_pred             CcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCC
Q 039126          168 GLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINC  241 (295)
Q Consensus       168 ~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c  241 (295)
                      .+|..+.++++|+.|++++|.+.+..|..+..+  ++|+.|++++|.....++...    ..+++|+.|++++|
T Consensus       299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~l----~~~~~L~~L~Ls~n  366 (968)
T PLN00113        299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSL--PRLQVLQLWSNKFSGEIPKNL----GKHNNLTVLDLSTN  366 (968)
T ss_pred             CCChhHcCCCCCcEEECCCCccCCcCChhHhcC--CCCCEEECcCCCCcCcCChHH----hCCCCCcEEECCCC
Confidence            455555555555555555555555555555554  555555555543322333211    33445555555444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=2.3e-22  Score=199.40  Aligned_cols=198  Identities=21%  Similarity=0.230  Sum_probs=123.3

Q ss_pred             CCCCceeEecCCCCcc-ccchhh-cCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEE
Q 039126           14 RPKNLVSPEIPRNSIK-QLWKVV-QRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVAR   91 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~-~l~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   91 (295)
                      .+++|+.|++++|.+. .+|..+ ..+++|++|++++|.+.+.+|. ..+++|++|++++|.....+|..++.+++|++|
T Consensus        91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L  169 (968)
T PLN00113         91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL  169 (968)
T ss_pred             CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence            4777788888877776 566554 3777777777777776655553 345666677776665555666666777777777


Q ss_pred             ccccCcCCceeCCcc-cCccccEEeccCCCCCcccCcCCC---CCceEEccCcccc-ccchhhhCCCCCcEEecCCCcCC
Q 039126           92 NLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPELFY---NIKELSLDGTAIN-ELPSSIEYLSKLVILNLGNSSRL  166 (295)
Q Consensus        92 ~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~~~~~  166 (295)
                      ++++|.....+|..+ .+++|++|++++|...+.+|..++   +|++|++++|.+. .+|..++.+++|++|++++|...
T Consensus       170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  249 (968)
T PLN00113        170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT  249 (968)
T ss_pred             ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence            777665544555444 366666777766665555554433   4556666666665 55656666666666666666544


Q ss_pred             cCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccc
Q 039126          167 EGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCS  214 (295)
Q Consensus       167 ~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~  214 (295)
                      +.+|..++++++|++|++++|.+.+.+|..+..+  ++|++|++++|.
T Consensus       250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~Ls~n~  295 (968)
T PLN00113        250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL--QKLISLDLSDNS  295 (968)
T ss_pred             cccChhHhCCCCCCEEECcCCeeeccCchhHhhc--cCcCEEECcCCe
Confidence            4555556666666666666665555555555555  555555555543

>PLN03210 Resistant to P

Probab=99.76  E-value=2e-17  Score=165.72  Aligned_cols=237  Identities=24%  Similarity=0.361  Sum_probs=168.9

Q ss_pred             CCcCCCCCCCCCceeEecCCCC-ccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccch--
Q 039126            6 FKSLSSIIRPKNLVSPEIPRNS-IKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSI--   82 (295)
Q Consensus         6 ~~~~p~~~~~~~L~~L~l~~~~-~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--   82 (295)
                      +..+|....+++|+.|++++|. +..+|..++.+++|+.|++++|...+.+|....+++|++|++++|..++.+|...  
T Consensus       647 l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~n  726 (1153)
T PLN03210        647 LKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTN  726 (1153)
T ss_pred             cCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCC
Confidence            4556666667888888888764 5577878888888888888888767777754467777777777765443332110  


Q ss_pred             ------------------------------------------------hcccCCcEEccccCcCCceeCCcc-cCccccE
Q 039126           83 ------------------------------------------------RHLNKFVARNLKHCRSLTNLSTSI-HLESLKK  113 (295)
Q Consensus        83 ------------------------------------------------~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~  113 (295)
                                                                      ...++|+.|++++|..+..+|..+ .+++|+.
T Consensus       727 L~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~  806 (1153)
T PLN03210        727 ISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH  806 (1153)
T ss_pred             cCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCE
Confidence                                                            011345566666666666666655 3888999


Q ss_pred             EeccCCCCCcccCcC--CCCCceEEccCcc-ccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCC
Q 039126          114 LILSGCSNLMSFPEL--FYNIKELSLDGTA-INELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNL  190 (295)
Q Consensus       114 L~l~~~~~~~~~~~~--~~~L~~L~l~~~~-i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~  190 (295)
                      |++++|..++.+|..  +.+|++|++++|. +..+|..   .++|+.|++++| .+..+|.++..+++|+.|++++|+.+
T Consensus       807 L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L  882 (1153)
T PLN03210        807 LEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNL  882 (1153)
T ss_pred             EECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCc
Confidence            999998878888865  4578899999874 4566542   467899999987 57788988999999999999999888


Q ss_pred             CCchhhhhccCCCCcceeecccccccccccccch-----h----hhccCCcccEEeecCCCCChhhh
Q 039126          191 ESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSI-----I----FTKISRNTQSFDFINCFKLHQNV  248 (295)
Q Consensus       191 ~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~-----~----~~~~~~~L~~L~l~~c~~l~~~~  248 (295)
                      ..+|..+..+  ++|+.+++++|..++.++....     .    ....++....+.+.+|.++...+
T Consensus       883 ~~l~~~~~~L--~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a  947 (1153)
T PLN03210        883 QRVSLNISKL--KHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEA  947 (1153)
T ss_pred             CccCcccccc--cCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchh
Confidence            8888887777  8999999999988876543110     0    00123445667888998887654

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.74  E-value=8.1e-20  Score=163.07  Aligned_cols=227  Identities=25%  Similarity=0.313  Sum_probs=134.4

Q ss_pred             cCC-CCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCC--CCCCCCCcEeeccccccccccccchhc
Q 039126            8 SLS-SIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPS--LSLATNLESLNFQRYTSLLETHSSIRH   84 (295)
Q Consensus         8 ~~p-~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~   84 (295)
                      .+| .+|++..|..|||++|++.++|..+..-+++-+|+|++|.+ ..+|.  +-++..|-+||+|+ +.++.+|+.++.
T Consensus        94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RR  171 (1255)
T KOG0444|consen   94 GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRR  171 (1255)
T ss_pred             CCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhcccc-chhhhcCHHHHH
Confidence            355 45678888999999999888888888888888899988874 56663  67788888888888 577888888888


Q ss_pred             ccCCcEEccccCcC----CceeCCcccCccccEEeccCCCC------------------------CcccCcC---CCCCc
Q 039126           85 LNKFVARNLKHCRS----LTNLSTSIHLESLKKLILSGCSN------------------------LMSFPEL---FYNIK  133 (295)
Q Consensus        85 l~~L~~L~l~~~~~----l~~l~~~~~~~~L~~L~l~~~~~------------------------~~~~~~~---~~~L~  133 (295)
                      +..|+.|.+++|+.    +..+|.   +.+|+.|++++++.                        +..+|..   +.+|+
T Consensus       172 L~~LqtL~Ls~NPL~hfQLrQLPs---mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~Lr  248 (1255)
T KOG0444|consen  172 LSMLQTLKLSNNPLNHFQLRQLPS---MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLR  248 (1255)
T ss_pred             HhhhhhhhcCCChhhHHHHhcCcc---chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhh
Confidence            88888888887642    122221   22333333333221                        2222221   11233


Q ss_pred             eEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCC------------------------
Q 039126          134 ELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSN------------------------  189 (295)
Q Consensus       134 ~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~------------------------  189 (295)
                      .|++++|.|+++.-..+...+|+.|++++| .+..+|.+++++++|+.|.+.+|..                        
T Consensus       249 rLNLS~N~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~  327 (1255)
T KOG0444|consen  249 RLNLSGNKITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK  327 (1255)
T ss_pred             eeccCcCceeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence            344444444333322333333333333333 3344455555555555554444432                        


Q ss_pred             CCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCChhh
Q 039126          190 LESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQN  247 (295)
Q Consensus       190 ~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  247 (295)
                      ++-+|+++..+  ..|+.|.++. +.+-.+|..+    ..++.|+.|++...|+|..-
T Consensus       328 LElVPEglcRC--~kL~kL~L~~-NrLiTLPeaI----HlL~~l~vLDlreNpnLVMP  378 (1255)
T KOG0444|consen  328 LELVPEGLCRC--VKLQKLKLDH-NRLITLPEAI----HLLPDLKVLDLRENPNLVMP  378 (1255)
T ss_pred             cccCchhhhhh--HHHHHhcccc-cceeechhhh----hhcCCcceeeccCCcCccCC
Confidence            33444444433  6666666663 4455566644    56788888888888887754

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.74  E-value=8.6e-20  Score=161.52  Aligned_cols=220  Identities=22%  Similarity=0.210  Sum_probs=137.4

Q ss_pred             CCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCc-CCCCCCCCCCcEeecccccccccccc-chhcccCCcEE
Q 039126           15 PKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTE-IPSLSLATNLESLNFQRYTSLLETHS-SIRHLNKFVAR   91 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L   91 (295)
                      +.+|..|.|++|+++.+| ..++++++|+.|+|..|.+... .-.|..++.|+.|.+.+| .+..+.+ .|..|.++++|
T Consensus       196 lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l  274 (873)
T KOG4194|consen  196 LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHL  274 (873)
T ss_pred             cchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeeccccee
Confidence            344555555555555554 2334455555555555554222 224555555555555553 3334433 35667777777


Q ss_pred             ccccCcCCceeCCcc--cCccccEEeccCCCCCcccCcCC---CCCceEEccCccccccch-hhhCCCCCcEEecCCCcC
Q 039126           92 NLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPELF---YNIKELSLDGTAINELPS-SIEYLSKLVILNLGNSSR  165 (295)
Q Consensus        92 ~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~~  165 (295)
                      +++.| .+..+..+.  ++..|+.|++++|.+..--++.+   ++|+.|++++|.++++++ .+..+..|+.|.+++|..
T Consensus       275 ~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi  353 (873)
T KOG4194|consen  275 NLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI  353 (873)
T ss_pred             ecccc-hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccch
Confidence            77763 444444332  47888888888876554444433   477888888888887754 466677788888888743


Q ss_pred             CcCcccccCCCCCCCeeeccCCCCCC---CchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126          166 LEGLPSKICKLKSLQHLNLSCCSNLE---SFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF  242 (295)
Q Consensus       166 ~~~~p~~l~~l~~L~~L~l~~~~~~~---~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~  242 (295)
                      .......+.++++|++||+..|.+..   +....+.++  ++|++|++.|+ +++.++...+   ..++.|++|++.+..
T Consensus       354 ~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl--~~LrkL~l~gN-qlk~I~krAf---sgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  354 DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL--PSLRKLRLTGN-QLKSIPKRAF---SGLEALEHLDLGDNA  427 (873)
T ss_pred             HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc--hhhhheeecCc-eeeecchhhh---ccCcccceecCCCCc
Confidence            33233456678888888888876543   333445556  88888888884 5788876432   578888888887764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.73  E-value=2.1e-19  Score=160.54  Aligned_cols=211  Identities=22%  Similarity=0.326  Sum_probs=138.6

Q ss_pred             CCCcCCCCC--CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCC-------------------------cCC-
Q 039126            5 PFKSLSSII--RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLT-------------------------EIP-   56 (295)
Q Consensus         5 ~~~~~p~~~--~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~-------------------------~~~-   56 (295)
                      .++++|+..  ++..|-.|||++|.+..+|+.++++.+|+.|+|++|.+.-                         .+| 
T Consensus       137 ~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt  216 (1255)
T KOG0444|consen  137 NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT  216 (1255)
T ss_pred             ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC
Confidence            455566432  4666666666666666666667777777777777765311                         122 


Q ss_pred             CCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCceeCCccc-CccccEEeccCCCCCcccCcCCC---CC
Q 039126           57 SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIH-LESLKKLILSGCSNLMSFPELFY---NI  132 (295)
Q Consensus        57 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~~---~L  132 (295)
                      ++..+.+|..+|+|. +.+..+|+.+..+++|+.|++++ +.++.+..... +.+|+.|+++.|+ +..+|..+.   .|
T Consensus       217 sld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL  293 (1255)
T KOG0444|consen  217 SLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKL  293 (1255)
T ss_pred             chhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHH
Confidence            233344444444444 34445555555555666666665 34444444333 5566666666654 445565544   34


Q ss_pred             ceEEccCcccc--ccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeec
Q 039126          133 KELSLDGTAIN--ELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEA  210 (295)
Q Consensus       133 ~~L~l~~~~i~--~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l  210 (295)
                      +.|.+.+|.++  .+|+.++.+..|+.+...+| .+.-+|+.+++|.+|+.|.+++|.. -++|+.+.-+  +.|+.||+
T Consensus       294 ~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrL-iTLPeaIHlL--~~l~vLDl  369 (1255)
T KOG0444|consen  294 TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRL-ITLPEAIHLL--PDLKVLDL  369 (1255)
T ss_pred             HHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccce-eechhhhhhc--CCcceeec
Confidence            46666677655  77777888888888877766 6788899999999999999999664 5699999888  99999999


Q ss_pred             cccccccccccc
Q 039126          211 HWCSSLETLSGL  222 (295)
Q Consensus       211 ~~~~~l~~~~~~  222 (295)
                      +.++++..-|..
T Consensus       370 reNpnLVMPPKP  381 (1255)
T KOG0444|consen  370 RENPNLVMPPKP  381 (1255)
T ss_pred             cCCcCccCCCCc
Confidence            999998876653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.68  E-value=1.1e-17  Score=148.29  Aligned_cols=233  Identities=20%  Similarity=0.208  Sum_probs=123.9

Q ss_pred             CCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccc-cchhcccCCcE
Q 039126           14 RPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETH-SSIRHLNKFVA   90 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~   90 (295)
                      .++.|++|||+.|.|..++ ..+..=.++++|+|++|.+..... .|..+..|..|.|++| .++.+| ..|.++++|+.
T Consensus       147 ~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~  225 (873)
T KOG4194|consen  147 ALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLES  225 (873)
T ss_pred             hHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhh
Confidence            3666777788877777776 345555677777777777543222 4667777777777773 455555 34666777777


Q ss_pred             EccccCc-----------------------CCceeCCcc--cCccccEEeccCCCCCcccCc----CCCCCceEEccCcc
Q 039126           91 RNLKHCR-----------------------SLTNLSTSI--HLESLKKLILSGCSNLMSFPE----LFYNIKELSLDGTA  141 (295)
Q Consensus        91 L~l~~~~-----------------------~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~  141 (295)
                      |++..|.                       .+..+.++.  ++..++.|+++.|+. ..+..    .+..|++|++++|.
T Consensus       226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l-~~vn~g~lfgLt~L~~L~lS~Na  304 (873)
T KOG4194|consen  226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL-QAVNEGWLFGLTSLEQLDLSYNA  304 (873)
T ss_pred             hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh-hhhhcccccccchhhhhccchhh
Confidence            7776642                       122222221  144444455544432 12211    12234455666666


Q ss_pred             cccc-chhhhCCCCCcEEecCCCcCCcCcc-cccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccc
Q 039126          142 INEL-PSSIEYLSKLVILNLGNSSRLEGLP-SKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETL  219 (295)
Q Consensus       142 i~~~-~~~~~~~~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~  219 (295)
                      |..+ ++....+++|+.|+++.|. +..++ ..+..+..|++|.+++|.+..-....+.++  ++|+.||++.+..-..+
T Consensus       305 I~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l--ssL~~LdLr~N~ls~~I  381 (873)
T KOG4194|consen  305 IQRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL--SSLHKLDLRSNELSWCI  381 (873)
T ss_pred             hheeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh--hhhhhhcCcCCeEEEEE
Confidence            6544 2233445666666666653 33333 345556666666666655433333344445  77777777653321111


Q ss_pred             cccchhhhccCCcccEEeecCCCCChhhhHhhHH
Q 039126          220 SGLSIIFTKISRNTQSFDFINCFKLHQNVVQGII  253 (295)
Q Consensus       220 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  253 (295)
                      ......+ ..+++|+.|++.+. +++.++.+.+.
T Consensus       382 EDaa~~f-~gl~~LrkL~l~gN-qlk~I~krAfs  413 (873)
T KOG4194|consen  382 EDAAVAF-NGLPSLRKLRLTGN-QLKSIPKRAFS  413 (873)
T ss_pred             ecchhhh-ccchhhhheeecCc-eeeecchhhhc
Confidence            1111122 35777777777664 45554444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.66  E-value=9e-18  Score=155.63  Aligned_cols=269  Identities=23%  Similarity=0.292  Sum_probs=188.5

Q ss_pred             CCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcE
Q 039126           12 IIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVA   90 (295)
Q Consensus        12 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   90 (295)
                      .+...+++++|+++++++.+|..++.|.+|+.+++.+|.+ ..+| .+.....|+.|...+ +.++.+|.....++.|+.
T Consensus       237 ~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~-nel~yip~~le~~~sL~t  314 (1081)
T KOG0618|consen  237 HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAY-NELEYIPPFLEGLKSLRT  314 (1081)
T ss_pred             ccccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhh-hhhhhCCCcccccceeee
Confidence            3457788999999999999998889999999999999876 4555 466677777777766 456666766667777777


Q ss_pred             EccccCcCCceeCCcc---------------------------cCccccEEeccCCCCCcc-cC--cCCCCCceEEccCc
Q 039126           91 RNLKHCRSLTNLSTSI---------------------------HLESLKKLILSGCSNLMS-FP--ELFYNIKELSLDGT  140 (295)
Q Consensus        91 L~l~~~~~l~~l~~~~---------------------------~~~~L~~L~l~~~~~~~~-~~--~~~~~L~~L~l~~~  140 (295)
                      |++.. ..+..+|...                           ..+.|+.|++.+|..... +|  ..+.+|+.|++++|
T Consensus       315 LdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN  393 (1081)
T KOG0618|consen  315 LDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN  393 (1081)
T ss_pred             eeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence            77766 3444444321                           134566677777654443 33  24558999999999


Q ss_pred             cccccchh-hhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccc
Q 039126          141 AINELPSS-IEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETL  219 (295)
Q Consensus       141 ~i~~~~~~-~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~  219 (295)
                      .+..+|.. +.++..|++|++++| +++.+|..+..++.|++|...+|.+ ..+| .+..+  +.|+.+|++ |++++.+
T Consensus       394 rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l-~~fP-e~~~l--~qL~~lDlS-~N~L~~~  467 (1081)
T KOG0618|consen  394 RLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQL-LSFP-ELAQL--PQLKVLDLS-CNNLSEV  467 (1081)
T ss_pred             ccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCce-eech-hhhhc--CcceEEecc-cchhhhh
Confidence            99999875 578899999999998 6899999999999999999998664 5677 77777  999999999 5678877


Q ss_pred             cccchhhhccC-CcccEEeecCCCCChhh--hHhhHHHHHHHHccCCCCCCCCCcEEEEEEeeecccCcccccccCC
Q 039126          220 SGLSIIFTKIS-RNTQSFDFINCFKLHQN--VVQGIINNAQLKLQLPTSNLKTQAIIIIVLKYNNSAQSNVNRDVRE  293 (295)
Q Consensus       220 ~~~~~~~~~~~-~~L~~L~l~~c~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  293 (295)
                      ....    ... ++|++|++++.+.+.-.  .++..-...+.++..-.....+...-+|.......++....-+++.
T Consensus       468 ~l~~----~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~~~~d~~~n~~~~t~Gv~~~~gqrnk~c~~~  540 (1081)
T KOG0618|consen  468 TLPE----ALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLNNTPDGNVNAFLWTYGVAGVSGQRNKVCSRA  540 (1081)
T ss_pred             hhhh----hCCCcccceeeccCCcccccchhhhHHhhhhhheecccCCCCccccceeheeeccchhcccccchhhhh
Confidence            6643    234 89999999999864322  1111111112222211223334445666667777777666666554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=2.3e-18  Score=130.78  Aligned_cols=158  Identities=22%  Similarity=0.321  Sum_probs=118.5

Q ss_pred             CCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchh
Q 039126            5 PFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIR   83 (295)
Q Consensus         5 ~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~   83 (295)
                      ++.++|..|++.+.++|.+++|+++.+|+.+..+.+|+.|++.+|++ +++| +++.+++|+.|++.- +.+..+|.+++
T Consensus        22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgm-nrl~~lprgfg   99 (264)
T KOG0617|consen   22 SFEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGM-NRLNILPRGFG   99 (264)
T ss_pred             cHhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecch-hhhhcCccccC
Confidence            56678889999999999999999999999999999999999999985 5666 799999999999987 67888999999


Q ss_pred             cccCCcEEccccCcCCc-eeCCccc-CccccEEeccCCCCCcccCcCCCCCceEEccCccccccchhhhCCCCCcEEecC
Q 039126           84 HLNKFVARNLKHCRSLT-NLSTSIH-LESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLG  161 (295)
Q Consensus        84 ~l~~L~~L~l~~~~~l~-~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~  161 (295)
                      .++.|++||+.+|..-+ .+|..++ +..|+.|+++.|.+ .-+|                    +.++.+++|+.|.+.
T Consensus       100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp--------------------~dvg~lt~lqil~lr  158 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILP--------------------PDVGKLTNLQILSLR  158 (264)
T ss_pred             CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCC--------------------hhhhhhcceeEEeec
Confidence            99999999999864333 4666554 77888888888753 2334                    444445555555555


Q ss_pred             CCcCCcCcccccCCCCCCCeeeccC
Q 039126          162 NSSRLEGLPSKICKLKSLQHLNLSC  186 (295)
Q Consensus       162 ~~~~~~~~p~~l~~l~~L~~L~l~~  186 (295)
                      .| .+-.+|.+++.+..|+.|++++
T Consensus       159 dn-dll~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  159 DN-DLLSLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             cC-chhhCcHHHHHHHHHHHHhccc
Confidence            44 2333444555555555555555

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.63  E-value=1.6e-15  Score=143.93  Aligned_cols=216  Identities=19%  Similarity=0.284  Sum_probs=121.6

Q ss_pred             CCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCC-CCCCCCCcEeeccccccccccccch
Q 039126            4 CPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPS-LSLATNLESLNFQRYTSLLETHSSI   82 (295)
Q Consensus         4 ~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~   82 (295)
                      ..++++|... .++++.|++++|.++.+|..+.  .+|+.|++++|.+. .+|. +  ...|+.|++++|. +..+|..+
T Consensus       188 ~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~N~-L~~LP~~l  260 (754)
T PRK15370        188 LGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMELSINR-ITELPERL  260 (754)
T ss_pred             CCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEECcCCc-cCcCChhH
Confidence            4556666532 4578888888888888876553  47888888887754 4552 2  2356777777643 44555443


Q ss_pred             hcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccCcCC----------------------CCCceEEccCc
Q 039126           83 RHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELF----------------------YNIKELSLDGT  140 (295)
Q Consensus        83 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------------~~L~~L~l~~~  140 (295)
                      .  .+|+.|++++| .++.+|..+ ..+|+.|++++|++ ..+|..+                      .+|+.|++++|
T Consensus       261 ~--s~L~~L~Ls~N-~L~~LP~~l-~~sL~~L~Ls~N~L-t~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N  335 (754)
T PRK15370        261 P--SALQSLDLFHN-KISCLPENL-PEELRYLSVYDNSI-RTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN  335 (754)
T ss_pred             h--CCCCEEECcCC-ccCcccccc-CCCCcEEECCCCcc-ccCcccchhhHHHHHhcCCccccCCccccccceeccccCC
Confidence            2  35666666653 444555432 24566666666542 2333322                      24555555555


Q ss_pred             cccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccccccccc
Q 039126          141 AINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLS  220 (295)
Q Consensus       141 ~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~  220 (295)
                      .++.+|..+  +++|+.|++++| .+..+|..+  .+.|+.|++++|.+. .+|..+    +.+|+.|+++++ .++.+|
T Consensus       336 ~Lt~LP~~l--~~sL~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l----~~sL~~LdLs~N-~L~~LP  404 (754)
T PRK15370        336 ALTSLPASL--PPELQVLDVSKN-QITVLPETL--PPTITTLDVSRNALT-NLPENL----PAALQIMQASRN-NLVRLP  404 (754)
T ss_pred             ccccCChhh--cCcccEEECCCC-CCCcCChhh--cCCcCEEECCCCcCC-CCCHhH----HHHHHHHhhccC-CcccCc
Confidence            555555433  245666666665 344455443  245666666665543 445442    245666666664 355555


Q ss_pred             ccchhhhccCCcccEEeecCCC
Q 039126          221 GLSIIFTKISRNTQSFDFINCF  242 (295)
Q Consensus       221 ~~~~~~~~~~~~L~~L~l~~c~  242 (295)
                      ..........+++..+++.+.+
T Consensus       405 ~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        405 ESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             hhHHHHhhcCCCccEEEeeCCC
Confidence            4333333445677777777765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.60  E-value=3.4e-15  Score=141.67  Aligned_cols=204  Identities=18%  Similarity=0.263  Sum_probs=145.6

Q ss_pred             CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCC-CCCCCCCcEeeccccccccccccchhcccCCcEEcc
Q 039126           15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPS-LSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNL   93 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   93 (295)
                      ..+...|+++++.++.+|..+.  ..|+.|++++|.+. .+|. +  .++|++|++++| .++.+|..+  ..+|+.|++
T Consensus       177 ~~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l--~~nL~~L~Ls~N-~LtsLP~~l--~~~L~~L~L  248 (754)
T PRK15370        177 KNNKTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENL--QGNIKTLYANSN-QLTSIPATL--PDTIQEMEL  248 (754)
T ss_pred             ccCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhh--ccCCCEEECCCC-ccccCChhh--hccccEEEC
Confidence            3567899999999999987664  57999999999865 5663 3  358999999985 567787654  357999999


Q ss_pred             ccCcCCceeCCcccCccccEEeccCCCCCcccCcCCC-CCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccc
Q 039126           94 KHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFY-NIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSK  172 (295)
Q Consensus        94 ~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~  172 (295)
                      ++|. +..+|..+ ..+|+.|++++|++ ..+|..++ +|+.|++++|.++.+|..+.  ++|+.|++++| .+..+|..
T Consensus       249 s~N~-L~~LP~~l-~s~L~~L~Ls~N~L-~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~  322 (754)
T PRK15370        249 SINR-ITELPERL-PSALQSLDLFHNKI-SCLPENLPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN-SLTALPET  322 (754)
T ss_pred             cCCc-cCcCChhH-hCCCCEEECcCCcc-CccccccCCCCcEEECCCCccccCcccch--hhHHHHHhcCC-ccccCCcc
Confidence            9964 55777544 46899999998864 46776554 89999999999998876542  46777888876 34556644


Q ss_pred             cCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCChhh
Q 039126          173 ICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQN  247 (295)
Q Consensus       173 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  247 (295)
                      +  .++|+.|++++|.+. .+|..    +|++|+.|++++| .++.+|.      ...++|+.|++++| +++..
T Consensus       323 l--~~sL~~L~Ls~N~Lt-~LP~~----l~~sL~~L~Ls~N-~L~~LP~------~lp~~L~~LdLs~N-~Lt~L  382 (754)
T PRK15370        323 L--PPGLKTLEAGENALT-SLPAS----LPPELQVLDVSKN-QITVLPE------TLPPTITTLDVSRN-ALTNL  382 (754)
T ss_pred             c--cccceeccccCCccc-cCChh----hcCcccEEECCCC-CCCcCCh------hhcCCcCEEECCCC-cCCCC
Confidence            3  356777777776643 35554    3467777777775 3555554      23457777777776 34443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.60  E-value=2.6e-18  Score=146.13  Aligned_cols=212  Identities=21%  Similarity=0.222  Sum_probs=131.3

Q ss_pred             CceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccccC
Q 039126           17 NLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHC   96 (295)
Q Consensus        17 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   96 (295)
                      .+..++.++|++.++|+.+..+..|+.++.+.|.+....++++.+-.+..++..+ +.+.++|..+.++.++..+++.+ 
T Consensus        92 ~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~-  169 (565)
T KOG0472|consen   92 ALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEG-  169 (565)
T ss_pred             HHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccc-
Confidence            3333444444444444444444444444444444332223444444444444444 34455565666666666666666 


Q ss_pred             cCCceeCCcc-cCccccEEeccCCCCCcccCcCCCCCc---eEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccc
Q 039126           97 RSLTNLSTSI-HLESLKKLILSGCSNLMSFPELFYNIK---ELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSK  172 (295)
Q Consensus        97 ~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~L~---~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~  172 (295)
                      ..+..+|... .++.|++++...| .++.+|+.++.|+   .|+++.|.+..+| +|..+..|.+++++.| .+.-+|.+
T Consensus       170 n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N-~i~~lpae  246 (565)
T KOG0472|consen  170 NKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN-QIEMLPAE  246 (565)
T ss_pred             cchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc-HHHhhHHH
Confidence            3444444443 4677777777765 4677777766544   5577778887777 6777777888887776 56777766


Q ss_pred             cC-CCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126          173 IC-KLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF  242 (295)
Q Consensus       173 l~-~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~  242 (295)
                      .+ +++++.+||+.+|. ..+.|.++-.+  .+|++||++++ .++.+|.+.    +.+ .|+.|-+.+.|
T Consensus       247 ~~~~L~~l~vLDLRdNk-lke~Pde~clL--rsL~rLDlSNN-~is~Lp~sL----gnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  247 HLKHLNSLLVLDLRDNK-LKEVPDEICLL--RSLERLDLSNN-DISSLPYSL----GNL-HLKFLALEGNP  308 (565)
T ss_pred             Hhcccccceeeeccccc-cccCchHHHHh--hhhhhhcccCC-ccccCCccc----ccc-eeeehhhcCCc
Confidence            65 78888888888854 56778877766  88888888874 567777654    455 67777777765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.59  E-value=4.8e-18  Score=144.53  Aligned_cols=215  Identities=23%  Similarity=0.302  Sum_probs=165.4

Q ss_pred             CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEc
Q 039126           14 RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARN   92 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   92 (295)
                      ++..+.+|++.+|++.++|.+++.+..++.++.+.|.+. .+| ++..+..++.++.++ +....+++.++.+-.+..++
T Consensus        66 nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~l~dl~  143 (565)
T KOG0472|consen   66 NLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS-NELKELPDSIGRLLDLEDLD  143 (565)
T ss_pred             cccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc-cceeecCchHHHHhhhhhhh
Confidence            466677777777777777777777777888887777743 444 677777777888777 45566666777777777777


Q ss_pred             cccCcCCceeCCccc-CccccEEeccCCCCCcccCcC---CCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcC
Q 039126           93 LKHCRSLTNLSTSIH-LESLKKLILSGCSNLMSFPEL---FYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEG  168 (295)
Q Consensus        93 l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~  168 (295)
                      ..+ ..+..+|.+++ +.++..+++.+|.. ...|..   +..|++++.-.|.+..+|+.++.+.+|..|++.+| .+..
T Consensus       144 ~~~-N~i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N-ki~~  220 (565)
T KOG0472|consen  144 ATN-NQISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRN-KIRF  220 (565)
T ss_pred             ccc-cccccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhc-cccc
Confidence            766 45666666653 77777788888653 344432   34677888888889999999999999999999998 6888


Q ss_pred             cccccCCCCCCCeeeccCCCCCCCchhhhh-ccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126          169 LPSKICKLKSLQHLNLSCCSNLESFPNELR-NLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF  242 (295)
Q Consensus       169 ~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~  242 (295)
                      +| +|.+|..|++++++.|. .+.+|.+.. .+  +++..||+++ ++++++|.+.    ..+.+|.+|++++.+
T Consensus       221 lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L--~~l~vLDLRd-Nklke~Pde~----clLrsL~rLDlSNN~  286 (565)
T KOG0472|consen  221 LP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHL--NSLLVLDLRD-NKLKEVPDEI----CLLRSLERLDLSNND  286 (565)
T ss_pred             CC-CCCccHHHHHHHhcccH-HHhhHHHHhccc--ccceeeeccc-cccccCchHH----HHhhhhhhhcccCCc
Confidence            88 69999999999999865 567777765 66  9999999998 4689999865    578889999998863

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.56  E-value=4.3e-14  Score=133.82  Aligned_cols=214  Identities=19%  Similarity=0.210  Sum_probs=116.5

Q ss_pred             CCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccc----------
Q 039126            4 CPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYT----------   73 (295)
Q Consensus         4 ~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~----------   73 (295)
                      ..++++|..+ .++++.|++++|+++.+|.   ..++|++|++++|.+. .+|.+  .++|++|++++|.          
T Consensus       211 ~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~L~~Lp~lp~~  283 (788)
T PRK15387        211 SGLTTLPDCL-PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNPLTHLPALPSG  283 (788)
T ss_pred             CCCCcCCcch-hcCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccC-cccCc--ccccceeeccCCchhhhhhchhh
Confidence            4566777644 3478888888888887774   3567888888888654 44432  2345555555532          


Q ss_pred             ---------cccccccchhcccCCcEEccccCcCCceeCCcc------------------cCccccEEeccCCCCCcccC
Q 039126           74 ---------SLLETHSSIRHLNKFVARNLKHCRSLTNLSTSI------------------HLESLKKLILSGCSNLMSFP  126 (295)
Q Consensus        74 ---------~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~------------------~~~~L~~L~l~~~~~~~~~~  126 (295)
                               .+..+|.   .+++|+.|++++| .++.+|...                  ...+|+.|++++|+ +..+|
T Consensus       284 L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~-Ls~LP  358 (788)
T PRK15387        284 LCKLWIFGNQLTSLPV---LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQ-LASLP  358 (788)
T ss_pred             cCEEECcCCccccccc---cccccceeECCCC-ccccCCCCcccccccccccCccccccccccccceEecCCCc-cCCCC
Confidence                     2222222   1245666666664 333333210                  01234444444432 22333


Q ss_pred             cCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcc
Q 039126          127 ELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLY  206 (295)
Q Consensus       127 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~  206 (295)
                      ....+|+.|++++|.++.+|..   +.+|+.|++++| .+..+|..   .++|+.|++++|.+. .+|..     |.+|+
T Consensus       359 ~lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N-~Lt~LP~l---~s~L~~LdLS~N~Ls-sIP~l-----~~~L~  425 (788)
T PRK15387        359 TLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN-RLTSLPVL---PSELKELMVSGNRLT-SLPML-----PSGLL  425 (788)
T ss_pred             CCCcccceehhhccccccCccc---ccccceEEecCC-cccCCCCc---ccCCCEEEccCCcCC-CCCcc-----hhhhh
Confidence            3333444444444444443321   235666666665 34445532   345677777776543 35532     25677


Q ss_pred             eeecccccccccccccchhhhccCCcccEEeecCCCCChhhh
Q 039126          207 DIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNV  248 (295)
Q Consensus       207 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  248 (295)
                      .|+++++ .++.+|..+    ..+++|+.|++++++ +....
T Consensus       426 ~L~Ls~N-qLt~LP~sl----~~L~~L~~LdLs~N~-Ls~~~  461 (788)
T PRK15387        426 SLSVYRN-QLTRLPESL----IHLSSETTVNLEGNP-LSERT  461 (788)
T ss_pred             hhhhccC-cccccChHH----hhccCCCeEECCCCC-CCchH
Confidence            7777764 467777643    578899999999985 44443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.51  E-value=7.3e-16  Score=143.16  Aligned_cols=204  Identities=23%  Similarity=0.281  Sum_probs=158.9

Q ss_pred             CCCcCCCCC-CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccch-
Q 039126            5 PFKSLSSII-RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSI-   82 (295)
Q Consensus         5 ~~~~~p~~~-~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-   82 (295)
                      .+..+|++. .+.+|+.++..+|++..+|..+.....|+.|++..|.+....|....++.|++|++..| .+..+|+.+ 
T Consensus       252 ~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l  330 (1081)
T KOG0618|consen  252 NLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFL  330 (1081)
T ss_pred             hhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc-cccccchHHH
Confidence            355678766 59999999999999999999999999999999999986444446777999999999985 444444321 


Q ss_pred             -------------------------hcccCCcEEccccCcCCc-eeCCcccCccccEEeccCCCCCcccCcC----CCCC
Q 039126           83 -------------------------RHLNKFVARNLKHCRSLT-NLSTSIHLESLKKLILSGCSNLMSFPEL----FYNI  132 (295)
Q Consensus        83 -------------------------~~l~~L~~L~l~~~~~l~-~l~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~L  132 (295)
                                               ..++.|+.|.+.+|..-. .+|...+.+.|+.|++++|. ++++|..    +..|
T Consensus       331 ~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~L  409 (1081)
T KOG0618|consen  331 AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEEL  409 (1081)
T ss_pred             hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchHHh
Confidence                                     122335556666643322 24555568999999999985 6677763    4467


Q ss_pred             ceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCC-CCcceeecc
Q 039126          133 KELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFP-CDLYDIEAH  211 (295)
Q Consensus       133 ~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~-~~L~~L~l~  211 (295)
                      ++|++++|.++.+|..+..+..|+.|...+| .+..+| ++..++.|+.+|++.|.+........   .| +.|++||++
T Consensus       410 eeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~---~p~p~LkyLdlS  484 (1081)
T KOG0618|consen  410 EELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEA---LPSPNLKYLDLS  484 (1081)
T ss_pred             HHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeech-hhhhcCcceEEecccchhhhhhhhhh---CCCcccceeecc
Confidence            8999999999999999999999999999987 678898 79999999999999998765332222   44 999999999


Q ss_pred             cccc
Q 039126          212 WCSS  215 (295)
Q Consensus       212 ~~~~  215 (295)
                      |+..
T Consensus       485 GN~~  488 (1081)
T KOG0618|consen  485 GNTR  488 (1081)
T ss_pred             CCcc
Confidence            9765

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.50  E-value=1.2e-14  Score=126.50  Aligned_cols=232  Identities=17%  Similarity=0.162  Sum_probs=159.5

Q ss_pred             CCCceeEecCCCCcc-----ccchhhcCCCCCcEEecCCCCCCC--c----CC-CCCCCCCCcEeeccccccccccccch
Q 039126           15 PKNLVSPEIPRNSIK-----QLWKVVQRLVNLKSINLNHSEHLT--E----IP-SLSLATNLESLNFQRYTSLLETHSSI   82 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~L~~~~~~~--~----~~-~~~~l~~L~~L~l~~~~~~~~~~~~~   82 (295)
                      ..+++.++++++.++     .++..+...+.|++++++++.+..  .    ++ .+..+++|++|++++|......+..+
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  101 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL  101 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence            667999999999884     356677888889999999987642  1    11 35678899999999987665555555


Q ss_pred             hcccC---CcEEccccCcCCce----eCCcc-cC-ccccEEeccCCCCCcc----cC---cCCCCCceEEccCcccc---
Q 039126           83 RHLNK---FVARNLKHCRSLTN----LSTSI-HL-ESLKKLILSGCSNLMS----FP---ELFYNIKELSLDGTAIN---  143 (295)
Q Consensus        83 ~~l~~---L~~L~l~~~~~l~~----l~~~~-~~-~~L~~L~l~~~~~~~~----~~---~~~~~L~~L~l~~~~i~---  143 (295)
                      ..+.+   |++|++++|..-..    +.... .+ ++|+.|++++|.+.+.    ++   ....+|++|++++|.++   
T Consensus       102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  181 (319)
T cd00116         102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG  181 (319)
T ss_pred             HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence            55555   99999998753311    11111 24 7899999999986632    22   23347999999999887   


Q ss_pred             --ccchhhhCCCCCcEEecCCCcCCc----CcccccCCCCCCCeeeccCCCCCCCchhhhhccC---CCCcceeeccccc
Q 039126          144 --ELPSSIEYLSKLVILNLGNSSRLE----GLPSKICKLKSLQHLNLSCCSNLESFPNELRNLF---PCDLYDIEAHWCS  214 (295)
Q Consensus       144 --~~~~~~~~~~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~---~~~L~~L~l~~~~  214 (295)
                        .++..+...++|++|++++|....    .++..+..+++|++|++++|.+.+..+..+...+   .+.|++|++++|.
T Consensus       182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence              234445566799999999985432    2444567889999999999987664444433322   2799999999985


Q ss_pred             ccccccc-cchhhhccCCcccEEeecCCCCChhhh
Q 039126          215 SLETLSG-LSIIFTKISRNTQSFDFINCFKLHQNV  248 (295)
Q Consensus       215 ~l~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~~~  248 (295)
                       +++... ........+++|++++++++. +....
T Consensus       262 -i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~  294 (319)
T cd00116         262 -ITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEG  294 (319)
T ss_pred             -CCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHH
Confidence             432111 111122456899999999974 44443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.46  E-value=1.8e-15  Score=115.14  Aligned_cols=187  Identities=25%  Similarity=0.294  Sum_probs=133.9

Q ss_pred             hcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCceeCCccc-CccccE
Q 039126           35 VQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIH-LESLKK  113 (295)
Q Consensus        35 ~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~-~~~L~~  113 (295)
                      +-.+.+++.|.+++|.+....|.+..+++|++|++.+ +.++.+|..+..+++|+.|++.- ..+..+|.+++ ++.|+.
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~lev  106 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEV  106 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhh
Confidence            3456667777788887665556777788888888776 56777777777777777777764 45555666554 566666


Q ss_pred             EeccCCCCCcccCcCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCc
Q 039126          114 LILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESF  193 (295)
Q Consensus       114 L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~  193 (295)
                      |++.+|+...                   ..+|..|..++.|..|.++.| -..-+|..++++.+|+.|.+.+|... ++
T Consensus       107 ldltynnl~e-------------------~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll-~l  165 (264)
T KOG0617|consen  107 LDLTYNNLNE-------------------NSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLL-SL  165 (264)
T ss_pred             hhcccccccc-------------------ccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchh-hC
Confidence            6665553221                   156777778888999999988 46778889999999999999998754 69


Q ss_pred             hhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCChhhh
Q 039126          194 PNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNV  248 (295)
Q Consensus       194 ~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  248 (295)
                      |..++.+  +.|+.|.|.+. .++.+|.+... .....+-+.+.+.+.|-...++
T Consensus       166 pkeig~l--t~lrelhiqgn-rl~vlppel~~-l~l~~~k~v~r~E~NPwv~pIa  216 (264)
T KOG0617|consen  166 PKEIGDL--TRLRELHIQGN-RLTVLPPELAN-LDLVGNKQVMRMEENPWVNPIA  216 (264)
T ss_pred             cHHHHHH--HHHHHHhcccc-eeeecChhhhh-hhhhhhHHHHhhhhCCCCChHH
Confidence            9999999  99999999985 57877764421 1234444566666666555543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.43  E-value=7.4e-13  Score=125.49  Aligned_cols=175  Identities=21%  Similarity=0.206  Sum_probs=114.7

Q ss_pred             CCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEcccc
Q 039126           16 KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKH   95 (295)
Q Consensus        16 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   95 (295)
                      .+|+.|++++|+++.+|.   ..++|+.|++++|.+. .+|.+  ...|+.|++++| .++.+|..   ..+|++|++++
T Consensus       282 ~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~-~Lp~l--p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~  351 (788)
T PRK15387        282 SGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLA-SLPAL--PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSD  351 (788)
T ss_pred             hhcCEEECcCCccccccc---cccccceeECCCCccc-cCCCC--cccccccccccC-cccccccc---ccccceEecCC
Confidence            345555666666655553   2357888888888754 34432  234667777774 44555531   24788888887


Q ss_pred             CcCCceeCCcccCccccEEeccCCCCCcccCcCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCC
Q 039126           96 CRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICK  175 (295)
Q Consensus        96 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~  175 (295)
                       ..++.+|..  ..+|+.|++++|+ +..+|....+|+.|++++|.++.+|..   .++|+.|++++|. +..+|..   
T Consensus       352 -N~Ls~LP~l--p~~L~~L~Ls~N~-L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~-LssIP~l---  420 (788)
T PRK15387        352 -NQLASLPTL--PSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNR-LTSLPML---  420 (788)
T ss_pred             -CccCCCCCC--Ccccceehhhccc-cccCcccccccceEEecCCcccCCCCc---ccCCCEEEccCCc-CCCCCcc---
Confidence             455666643  4577778888775 345776666788888888888777643   3567888888874 5556643   


Q ss_pred             CCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccc
Q 039126          176 LKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCS  214 (295)
Q Consensus       176 l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~  214 (295)
                      ..+|+.|++++|.+ ..+|..+..+  ++|+.|++++++
T Consensus       421 ~~~L~~L~Ls~NqL-t~LP~sl~~L--~~L~~LdLs~N~  456 (788)
T PRK15387        421 PSGLLSLSVYRNQL-TRLPESLIHL--SSETTVNLEGNP  456 (788)
T ss_pred             hhhhhhhhhccCcc-cccChHHhhc--cCCCeEECCCCC
Confidence            34567788887664 4677777776  788888888754

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.41  E-value=7.3e-14  Score=121.59  Aligned_cols=225  Identities=16%  Similarity=0.138  Sum_probs=151.6

Q ss_pred             CCCCceeEecCCCCccc-------cchhhcCCCCCcEEecCCCCCCCcCC-CCCCC---CCCcEeecccccccc----cc
Q 039126           14 RPKNLVSPEIPRNSIKQ-------LWKVVQRLVNLKSINLNHSEHLTEIP-SLSLA---TNLESLNFQRYTSLL----ET   78 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~-------l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l---~~L~~L~l~~~~~~~----~~   78 (295)
                      ..++++.++++++.+..       ++..+..+++|+.|++++|.+....+ .+..+   ++|++|++++|+...    .+
T Consensus        49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l  128 (319)
T cd00116          49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL  128 (319)
T ss_pred             hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH
Confidence            47779999999987662       34567789999999999998865444 33333   559999999986542    22


Q ss_pred             ccchhcc-cCCcEEccccCcCCce----eCCcc-cCccccEEeccCCCCCcc----cCcCC---CCCceEEccCcccc--
Q 039126           79 HSSIRHL-NKFVARNLKHCRSLTN----LSTSI-HLESLKKLILSGCSNLMS----FPELF---YNIKELSLDGTAIN--  143 (295)
Q Consensus        79 ~~~~~~l-~~L~~L~l~~~~~l~~----l~~~~-~~~~L~~L~l~~~~~~~~----~~~~~---~~L~~L~l~~~~i~--  143 (295)
                      ...+..+ ++|+.|++++|.....    ++..+ .+..|+.|++++|.+.+.    ++..+   .+|++|++++|.++  
T Consensus       129 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  208 (319)
T cd00116         129 AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE  208 (319)
T ss_pred             HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence            3345666 8999999999764321    11112 267899999999876532    33333   48999999999886  


Q ss_pred             ---ccchhhhCCCCCcEEecCCCcCCcCcccccC-----CCCCCCeeeccCCCCCC----CchhhhhccCCCCcceeecc
Q 039126          144 ---ELPSSIEYLSKLVILNLGNSSRLEGLPSKIC-----KLKSLQHLNLSCCSNLE----SFPNELRNLFPCDLYDIEAH  211 (295)
Q Consensus       144 ---~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~-----~l~~L~~L~l~~~~~~~----~~~~~l~~~~~~~L~~L~l~  211 (295)
                         .+...+..+++|++|++++|.........+.     ..+.|+.|++++|.+.+    .+...+...  ++|++++++
T Consensus       209 ~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~--~~L~~l~l~  286 (319)
T cd00116         209 GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK--ESLLELDLR  286 (319)
T ss_pred             HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC--CCccEEECC
Confidence               3345567789999999999854321111121     24789999999998763    334445555  899999999


Q ss_pred             cccccccccccc-hhhhccC-CcccEEeecCC
Q 039126          212 WCSSLETLSGLS-IIFTKIS-RNTQSFDFINC  241 (295)
Q Consensus       212 ~~~~l~~~~~~~-~~~~~~~-~~L~~L~l~~c  241 (295)
                      ++. ++..+... ....... +.|+++++.+.
T Consensus       287 ~N~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         287 GNK-FGEEGAQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             CCC-CcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence            864 45432211 1112233 67888877654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.29  E-value=3.9e-13  Score=114.60  Aligned_cols=241  Identities=14%  Similarity=0.101  Sum_probs=143.2

Q ss_pred             CCCcCCCCCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc-
Q 039126            5 PFKSLSSIIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS-   81 (295)
Q Consensus         5 ~~~~~p~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~-   81 (295)
                      .+.++|... .+.-..++|..|.|+.+| .+|+.+++||.|||+.|.+....| +|..++++..|-+.+++.++.+|.. 
T Consensus        57 GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~  135 (498)
T KOG4237|consen   57 GLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA  135 (498)
T ss_pred             CcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence            344444322 334456777778888776 445778888888888887666556 5777777777766666677766643 


Q ss_pred             hhcccCCcEEccccC-----------------------cCCceeCCcc--cCccccEEeccCCCCCc------------c
Q 039126           82 IRHLNKFVARNLKHC-----------------------RSLTNLSTSI--HLESLKKLILSGCSNLM------------S  124 (295)
Q Consensus        82 ~~~l~~L~~L~l~~~-----------------------~~l~~l~~~~--~~~~L~~L~l~~~~~~~------------~  124 (295)
                      ++++..++.|.+.-|                       +.+..++...  .+.+++.+++..|...-            .
T Consensus       136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~  215 (498)
T KOG4237|consen  136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM  215 (498)
T ss_pred             hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhh
Confidence            555555555544332                       2222222211  14555555555443110            0


Q ss_pred             cCcCCCC-------------------------CceE----EccCccccccc-hhhhCCCCCcEEecCCCcCCcCcccccC
Q 039126          125 FPELFYN-------------------------IKEL----SLDGTAINELP-SSIEYLSKLVILNLGNSSRLEGLPSKIC  174 (295)
Q Consensus       125 ~~~~~~~-------------------------L~~L----~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~~~~~~p~~l~  174 (295)
                      .|-+++.                         ++.+    ....+....-| ..|..+++|+.|++++|.....-+.+|.
T Consensus       216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe  295 (498)
T KOG4237|consen  216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE  295 (498)
T ss_pred             chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence            1111110                         0000    00011111112 2467889999999999865555677899


Q ss_pred             CCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCChhhhHhhH
Q 039126          175 KLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNVVQGI  252 (295)
Q Consensus       175 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  252 (295)
                      ++..++.|.+..|.+-..-...+.++  +.|+.|++.++. ++.+....+   +...+|..|.+-..|-.-+-....+
T Consensus       296 ~~a~l~eL~L~~N~l~~v~~~~f~~l--s~L~tL~L~~N~-it~~~~~aF---~~~~~l~~l~l~~Np~~CnC~l~wl  367 (498)
T KOG4237|consen  296 GAAELQELYLTRNKLEFVSSGMFQGL--SGLKTLSLYDNQ-ITTVAPGAF---QTLFSLSTLNLLSNPFNCNCRLAWL  367 (498)
T ss_pred             chhhhhhhhcCcchHHHHHHHhhhcc--ccceeeeecCCe-eEEEecccc---cccceeeeeehccCcccCccchHHH
Confidence            99999999999987655445566677  999999999954 666655332   6778888888876665544444333

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.08  E-value=1.3e-11  Score=105.50  Aligned_cols=224  Identities=15%  Similarity=0.157  Sum_probs=147.8

Q ss_pred             CCCCce--eEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeeccccccccccccchhcccCCc
Q 039126           14 RPKNLV--SPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETHSSIRHLNKFV   89 (295)
Q Consensus        14 ~~~~L~--~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (295)
                      .+++.+  ..+-++..++++|..+.  ..-..++|..|.+ ..+|  .|+.+++|+.|||++|+....-|..+.+++++.
T Consensus        42 ~Cs~~~g~~VdCr~~GL~eVP~~LP--~~tveirLdqN~I-~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~  118 (498)
T KOG4237|consen   42 TCSDVEGGIVDCRGKGLTEVPANLP--PETVEIRLDQNQI-SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLL  118 (498)
T ss_pred             ccCCCCCceEEccCCCcccCcccCC--CcceEEEeccCCc-ccCChhhccchhhhceecccccchhhcChHhhhhhHhhh
Confidence            355543  34445556777775332  2456788888875 4565  599999999999999776666778899999999


Q ss_pred             EEccccCcCCceeCCccc--CccccEEeccCCCCCcc---cCcCCCCCceEEccCccccccch-hhhCCCCCcEEecCCC
Q 039126           90 ARNLKHCRSLTNLSTSIH--LESLKKLILSGCSNLMS---FPELFYNIKELSLDGTAINELPS-SIEYLSKLVILNLGNS  163 (295)
Q Consensus        90 ~L~l~~~~~l~~l~~~~~--~~~L~~L~l~~~~~~~~---~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~  163 (295)
                      .|-+.++..++++|.+.+  +.+++.|.+..|+..--   .-..++++..|.+.+|.+..+++ .+..+..++.+.+..|
T Consensus       119 ~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  119 SLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN  198 (498)
T ss_pred             HHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence            998888889999998763  77777777776643211   11123333344444444443333 2233333333333322


Q ss_pred             c-------------------------------------------------------------CCcCcc-cccCCCCCCCe
Q 039126          164 S-------------------------------------------------------------RLEGLP-SKICKLKSLQH  181 (295)
Q Consensus       164 ~-------------------------------------------------------------~~~~~p-~~l~~l~~L~~  181 (295)
                      .                                                             .....| ..|.++++|++
T Consensus       199 p~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~  278 (498)
T KOG4237|consen  199 PFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRK  278 (498)
T ss_pred             ccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceE
Confidence            2                                                             111122 23678899999


Q ss_pred             eeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCChhh
Q 039126          182 LNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQN  247 (295)
Q Consensus       182 L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  247 (295)
                      |++++|.+.+.-+..+.+.  .+++.|.+.++ +++.+...++   +.+..|+.|.+.+. +++..
T Consensus       279 lnlsnN~i~~i~~~aFe~~--a~l~eL~L~~N-~l~~v~~~~f---~~ls~L~tL~L~~N-~it~~  337 (498)
T KOG4237|consen  279 LNLSNNKITRIEDGAFEGA--AELQELYLTRN-KLEFVSSGMF---QGLSGLKTLSLYDN-QITTV  337 (498)
T ss_pred             eccCCCccchhhhhhhcch--hhhhhhhcCcc-hHHHHHHHhh---hccccceeeeecCC-eeEEE
Confidence            9999998888788888888  99999999884 5787776543   67888999998885 34443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.05  E-value=1e-11  Score=110.59  Aligned_cols=201  Identities=20%  Similarity=0.270  Sum_probs=139.7

Q ss_pred             CCCCcCCCCC---CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeecccccccccccc
Q 039126            4 CPFKSLSSII---RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHS   80 (295)
Q Consensus         4 ~~~~~~p~~~---~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (295)
                      -.++.+|...   .+..-...|++.|.+.++|..+..|..|..+.++.|.+....+.+..+..|+++|++. +.+..+|.
T Consensus        60 rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~  138 (722)
T KOG0532|consen   60 RRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPD  138 (722)
T ss_pred             chhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCCh
Confidence            3445555433   2444456788888888888888888888888888887554444688888888888888 56677777


Q ss_pred             chhcccCCcEEccccCcCCceeCCccc-CccccEEeccCCCCCcccCcCCCC---CceEEccCccccccchhhhCCCCCc
Q 039126           81 SIRHLNKFVARNLKHCRSLTNLSTSIH-LESLKKLILSGCSNLMSFPELFYN---IKELSLDGTAINELPSSIEYLSKLV  156 (295)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~---L~~L~l~~~~i~~~~~~~~~~~~L~  156 (295)
                      .+..++ |+.|-+++ ++++.+|..++ ...|..|+.+.|+ +..+|..++.   |+.|.++.|++..+|.++..+ .|.
T Consensus       139 ~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi  214 (722)
T KOG0532|consen  139 GLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLI  214 (722)
T ss_pred             hhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-cee
Confidence            777775 77777765 67777777765 6677788888775 4556665553   446777888888888887744 478


Q ss_pred             EEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhh---hccCCCCcceeecccc
Q 039126          157 ILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNEL---RNLFPCDLYDIEAHWC  213 (295)
Q Consensus       157 ~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l---~~~~~~~L~~L~l~~~  213 (295)
                      .||++.| ++..+|..|.++..|++|-+.+|++ ..-|..+   +..  .=.++|++..|
T Consensus       215 ~lDfScN-kis~iPv~fr~m~~Lq~l~LenNPL-qSPPAqIC~kGkV--HIFKyL~~qA~  270 (722)
T KOG0532|consen  215 RLDFSCN-KISYLPVDFRKMRHLQVLQLENNPL-QSPPAQICEKGKV--HIFKYLSTQAC  270 (722)
T ss_pred             eeecccC-ceeecchhhhhhhhheeeeeccCCC-CCChHHHHhccce--eeeeeecchhc
Confidence            8888866 6777888888888888888888764 3334332   112  44466666666

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.03  E-value=1.4e-10  Score=112.30  Aligned_cols=104  Identities=23%  Similarity=0.340  Sum_probs=53.8

Q ss_pred             CCCCceeEecCCCC--ccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCc
Q 039126           14 RPKNLVSPEIPRNS--IKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFV   89 (295)
Q Consensus        14 ~~~~L~~L~l~~~~--~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (295)
                      .+++|++|-+.+|.  +..++ ..+..++.|++|||++|.-.+.+| .++.+-+|++|++++ +.+..+|..+++++.|.
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLI  621 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhh
Confidence            34455555555553  33333 224555555666665555455555 355555555555555 44555555555555555


Q ss_pred             EEccccCcCCceeCCccc-CccccEEeccC
Q 039126           90 ARNLKHCRSLTNLSTSIH-LESLKKLILSG  118 (295)
Q Consensus        90 ~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~  118 (295)
                      +|++..+..+...+.... +.+|++|.+..
T Consensus       622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  622 YLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             eeccccccccccccchhhhcccccEEEeec
Confidence            555555444444433332 55555555543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=2e-11  Score=100.95  Aligned_cols=179  Identities=24%  Similarity=0.310  Sum_probs=101.6

Q ss_pred             CceeEecCCCCcc--ccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc--chhcccCCcEE
Q 039126           17 NLVSPEIPRNSIK--QLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS--SIRHLNKFVAR   91 (295)
Q Consensus        17 ~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L   91 (295)
                      +|+.|||++..|+  ++...+..|.+|+.|.+.++.+...+- .+.+-.+|+.|+++.|+.++....  .+..+..|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            4777788777666  344555777788888887777654444 466777777777777766665432  24566666666


Q ss_pred             ccccCcCCceeCCcc---cCccccEEeccCCCCCcccCcCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcC
Q 039126           92 NLKHCRSLTNLSTSI---HLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEG  168 (295)
Q Consensus        92 ~l~~~~~l~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~  168 (295)
                      +++.|...++.-.-.   --+.|+.|+++++...-                 ..+.+..-...+++|.+||++.|-.++.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl-----------------~~sh~~tL~~rcp~l~~LDLSD~v~l~~  328 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL-----------------QKSHLSTLVRRCPNLVHLDLSDSVMLKN  328 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh-----------------hhhHHHHHHHhCCceeeeccccccccCc
Confidence            666654333221100   13445555555542110                 0112222235677777777777655543


Q ss_pred             -cccccCCCCCCCeeeccCCCCCCCchhhhhccC-CCCcceeeccccc
Q 039126          169 -LPSKICKLKSLQHLNLSCCSNLESFPNELRNLF-PCDLYDIEAHWCS  214 (295)
Q Consensus       169 -~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~~~L~~L~l~~~~  214 (295)
                       ...++.+++.|++|.++.|.  +..|..+..+- .|+|.+|++.||-
T Consensus       329 ~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  329 DCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEecccc
Confidence             22346677777777777774  33444332211 1777777777763

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.97  E-value=1.2e-09  Score=98.15  Aligned_cols=184  Identities=28%  Similarity=0.424  Sum_probs=99.1

Q ss_pred             EecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCC-CCcEeeccccccccccccchhcccCCcEEccccCcC
Q 039126           21 PEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLAT-NLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRS   98 (295)
Q Consensus        21 L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   98 (295)
                      +++..+.+..-...+..++.++.|++.++.+. +++ ...... +|++|++++ +.+..+|..++.+++|+.|++++ ..
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~-N~  174 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSF-ND  174 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccc-cchhhhhhhhhccccccccccCC-ch
Confidence            45555544333333444566666666666543 333 344443 666666666 45555555566666666666666 34


Q ss_pred             CceeCCcc-cCccccEEeccCCCCCcccCcC--CC-CCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccC
Q 039126           99 LTNLSTSI-HLESLKKLILSGCSNLMSFPEL--FY-NIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKIC  174 (295)
Q Consensus        99 l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~--~~-~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~  174 (295)
                      +.+++... ..++|+.|++++|+ ...+|..  .. .|+.+.+++|.+...+..+..+.++..+.+..| .+..++..++
T Consensus       175 l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~  252 (394)
T COG4886         175 LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLEDLPESIG  252 (394)
T ss_pred             hhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc-eeeeccchhc
Confidence            55555544 45666666666653 4455553  22 356666666655555555555556666555544 3333345555


Q ss_pred             CCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccc
Q 039126          175 KLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWC  213 (295)
Q Consensus       175 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~  213 (295)
                      .++.+++|++++|.+. .++. ++..  .+++.|++++.
T Consensus       253 ~l~~l~~L~~s~n~i~-~i~~-~~~~--~~l~~L~~s~n  287 (394)
T COG4886         253 NLSNLETLDLSNNQIS-SISS-LGSL--TNLRELDLSGN  287 (394)
T ss_pred             cccccceecccccccc-cccc-cccc--CccCEEeccCc
Confidence            6666666666665432 2222 4444  66666666653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.94  E-value=2.5e-11  Score=108.13  Aligned_cols=180  Identities=21%  Similarity=0.284  Sum_probs=146.2

Q ss_pred             CCCCcCCCCCC-CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc
Q 039126            4 CPFKSLSSIIR-PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS   81 (295)
Q Consensus         4 ~~~~~~p~~~~-~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~   81 (295)
                      ..+..+|..+. +..|+.+.+..|.+..+|..+..+..|.+|+|+.|++ ..+| .+..++ |++|-+++ ++++.+|..
T Consensus        85 NR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~  161 (722)
T KOG0532|consen   85 NRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSN-NKLTSLPEE  161 (722)
T ss_pred             cccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEec-CccccCCcc
Confidence            34566776653 7778999999999999999999999999999999985 4555 566666 88999988 789999999


Q ss_pred             hhcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccCcCCCCCc--eEEccCccccccchhhhCCCCCcEEe
Q 039126           82 IRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIK--ELSLDGTAINELPSSIEYLSKLVILN  159 (295)
Q Consensus        82 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~--~L~l~~~~i~~~~~~~~~~~~L~~L~  159 (295)
                      ++....|.+||.+.|...+-.+...++.+|+.|.+..|. ...+|..+..|.  .||++.|++..+|-.|.+|+.|++|-
T Consensus       162 ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~  240 (722)
T KOG0532|consen  162 IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQ  240 (722)
T ss_pred             cccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeee
Confidence            999999999999986555444444569999999999975 667888777654  89999999999999999999999999


Q ss_pred             cCCCcCCcCcccccCC---CCCCCeeeccCCC
Q 039126          160 LGNSSRLEGLPSKICK---LKSLQHLNLSCCS  188 (295)
Q Consensus       160 l~~~~~~~~~p~~l~~---l~~L~~L~l~~~~  188 (295)
                      +.+| -+..-|.+++-   ..-.++|+...|.
T Consensus       241 LenN-PLqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  241 LENN-PLQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             eccC-CCCCChHHHHhccceeeeeeecchhcc
Confidence            9988 47777776653   3335677777773

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=2.2e-10  Score=99.23  Aligned_cols=197  Identities=18%  Similarity=0.186  Sum_probs=110.5

Q ss_pred             CCCCceeEecCCCCccccc--hhhcCCCCCcEEecCCCCCCCcCC--C-CCCCCCCcEeeccccccccccccc-hhcccC
Q 039126           14 RPKNLVSPEIPRNSIKQLW--KVVQRLVNLKSINLNHSEHLTEIP--S-LSLATNLESLNFQRYTSLLETHSS-IRHLNK   87 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~L~~~~~~~~~~--~-~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~   87 (295)
                      ++++|+...|.++.+...+  .....|++++.|||+.|-+..--+  . ...+++|+.|+++.|......... -..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            4667777777776665544  355677777777777774322112  1 456777777777775433222211 235667


Q ss_pred             CcEEccccCcCCceeCCc--ccCccccEEeccCCCCCcc--cC-cCCCCCceEEccCccccccc--hhhhCCCCCcEEec
Q 039126           88 FVARNLKHCRSLTNLSTS--IHLESLKKLILSGCSNLMS--FP-ELFYNIKELSLDGTAINELP--SSIEYLSKLVILNL  160 (295)
Q Consensus        88 L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~--~~-~~~~~L~~L~l~~~~i~~~~--~~~~~~~~L~~L~l  160 (295)
                      |+.|.++.|..-..--..  ..+++|+.|++.+|.....  .+ +.+..|+.|++++|.+...+  ...+.++.|..|++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            777777776432211111  1367777777777632111  11 23346777788887776554  34567777777777


Q ss_pred             CCCcCCc-Ccccc-----cCCCCCCCeeeccCCCCCC-CchhhhhccCCCCcceeeccc
Q 039126          161 GNSSRLE-GLPSK-----ICKLKSLQHLNLSCCSNLE-SFPNELRNLFPCDLYDIEAHW  212 (295)
Q Consensus       161 ~~~~~~~-~~p~~-----l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~~~L~~L~l~~  212 (295)
                      +.|+.-. .+|+.     ...+++|++|++..|++.+ .....+..+  .+|..|.+..
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l--~nlk~l~~~~  335 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTL--ENLKHLRITL  335 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhcc--chhhhhhccc
Confidence            7764322 12332     2356778888888776632 122233333  6666666543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.91  E-value=1.8e-09  Score=97.05  Aligned_cols=180  Identities=26%  Similarity=0.377  Sum_probs=143.6

Q ss_pred             CCCCceeEecCCCCccccchhhcCCC-CCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEE
Q 039126           14 RPKNLVSPEIPRNSIKQLWKVVQRLV-NLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVAR   91 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~l~~~~~~l~-~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   91 (295)
                      ..+.++.|++.++.+++++.....+. +|+.|++++|.+ ..+| .+..+++|+.|++++ +.+..+|......+.|+.|
T Consensus       114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L  191 (394)
T COG4886         114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNL  191 (394)
T ss_pred             cccceeEEecCCcccccCccccccchhhcccccccccch-hhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhhe
Confidence            45679999999999999998888885 999999999985 4554 789999999999999 5777777776689999999


Q ss_pred             ccccCcCCceeCCccc-CccccEEeccCCCCCcccCcCC---CCCceEEccCccccccchhhhCCCCCcEEecCCCcCCc
Q 039126           92 NLKHCRSLTNLSTSIH-LESLKKLILSGCSNLMSFPELF---YNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLE  167 (295)
Q Consensus        92 ~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~  167 (295)
                      ++++ ..+..+|.... ...|+.+.+++|.. .+.+..+   .++..+.+..+.+..++..++.++.++.|++++| .+.
T Consensus       192 ~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n-~i~  268 (394)
T COG4886         192 DLSG-NKISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN-QIS  268 (394)
T ss_pred             eccC-CccccCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCceeeeccchhccccccceeccccc-ccc
Confidence            9998 67888888754 55699999999852 2334433   3555667778888777888889999999999988 566


Q ss_pred             CcccccCCCCCCCeeeccCCCCCCCchhhhhc
Q 039126          168 GLPSKICKLKSLQHLNLSCCSNLESFPNELRN  199 (295)
Q Consensus       168 ~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~  199 (295)
                      .++. ++.+..++.|+++++......+.....
T Consensus       269 ~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~~  299 (394)
T COG4886         269 SISS-LGSLTNLRELDLSGNSLSNALPLIALL  299 (394)
T ss_pred             cccc-ccccCccCEEeccCccccccchhhhcc
Confidence            6765 888999999999998877665555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.91  E-value=9.7e-10  Score=86.37  Aligned_cols=111  Identities=17%  Similarity=0.281  Sum_probs=32.0

Q ss_pred             CCcCCCCCCCCCceeEecCCCCccccchhhc-CCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccch-h
Q 039126            6 FKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQ-RLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSI-R   83 (295)
Q Consensus         6 ~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~   83 (295)
                      ++..|...++.+++.|+|++|.|..+. .++ .+.+|+.|++++|.+ ..++.+..++.|++|++++| .++.+...+ .
T Consensus         9 i~~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I-~~l~~l~~L~~L~~L~L~~N-~I~~i~~~l~~   85 (175)
T PF14580_consen    9 IEQIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQI-TKLEGLPGLPRLKTLDLSNN-RISSISEGLDK   85 (175)
T ss_dssp             ----------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHH
T ss_pred             ccccccccccccccccccccccccccc-chhhhhcCCCEEECCCCCC-ccccCccChhhhhhcccCCC-CCCccccchHH
Confidence            344555566778899999999888763 454 578899999999974 46677888889999999884 555665444 4


Q ss_pred             cccCCcEEccccCcCCceeCC---cccCccccEEeccCCC
Q 039126           84 HLNKFVARNLKHCRSLTNLST---SIHLESLKKLILSGCS  120 (295)
Q Consensus        84 ~l~~L~~L~l~~~~~l~~l~~---~~~~~~L~~L~l~~~~  120 (295)
                      .+++|+.|++++| .+.++..   ...+++|+.|++.+|.
T Consensus        86 ~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   86 NLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             H-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             hCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc
Confidence            6788888888874 3333322   1125555555555543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=9.2e-10  Score=95.42  Aligned_cols=176  Identities=19%  Similarity=0.229  Sum_probs=126.7

Q ss_pred             CCCCceeEecCCCCcc---ccchhhcCCCCCcEEecCCCCCCCcCCC--CCCCCCCcEeecccccccc-ccccchhcccC
Q 039126           14 RPKNLVSPEIPRNSIK---QLWKVVQRLVNLKSINLNHSEHLTEIPS--LSLATNLESLNFQRYTSLL-ETHSSIRHLNK   87 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~L~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~   87 (295)
                      .+++++.|||++|-+.   .+......+++|+.|+++.|.+.....+  -..+++|+.|.++.|.... .+......+|+
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs  223 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS  223 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence            5999999999999655   3456678999999999999987554432  3478899999999997553 34444678899


Q ss_pred             CcEEccccCcCCceeCCcc-cCccccEEeccCCCCCcc----cCcCCCCCceEEccCcccccc--chh-----hhCCCCC
Q 039126           88 FVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMS----FPELFYNIKELSLDGTAINEL--PSS-----IEYLSKL  155 (295)
Q Consensus        88 L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~----~~~~~~~L~~L~l~~~~i~~~--~~~-----~~~~~~L  155 (295)
                      |..|++.+|..+....... .+..|+.|+|++|++...    ....+++|+.|+++.+++.++  |+.     ...+++|
T Consensus       224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL  303 (505)
T KOG3207|consen  224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL  303 (505)
T ss_pred             HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence            9999999975333322222 378899999999875432    123566788889999988744  432     3567899


Q ss_pred             cEEecCCCcCCcCcc--cccCCCCCCCeeeccCCCCC
Q 039126          156 VILNLGNSSRLEGLP--SKICKLKSLQHLNLSCCSNL  190 (295)
Q Consensus       156 ~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~  190 (295)
                      ++|++..|. +..++  ..+..+++|+.|.+..+.+.
T Consensus       304 ~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  304 EYLNISENN-IRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             eeeecccCc-cccccccchhhccchhhhhhccccccc
Confidence            999999985 44333  23556777788887776554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.86  E-value=1e-09  Score=106.36  Aligned_cols=236  Identities=21%  Similarity=0.241  Sum_probs=163.8

Q ss_pred             CCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCC-CCcCCC--CCCCCCCcEeeccccccccccccch
Q 039126            6 FKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEH-LTEIPS--LSLATNLESLNFQRYTSLLETHSSI   82 (295)
Q Consensus         6 ~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~-~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~   82 (295)
                      ..+.|...+...++++.+.++.+..++... .+++|+.|-+.+|.. ...++.  |..++.|++||+++|....++|..+
T Consensus       513 ~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I  591 (889)
T KOG4658|consen  513 LSEIPQVKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI  591 (889)
T ss_pred             ccccccccchhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence            334666667788899988888877666443 455899999999863 445553  8899999999999999999999999


Q ss_pred             hcccCCcEEccccCcCCceeCCccc-CccccEEeccCCCCCcccCc---CCCCCceEEccCcccc---ccchhhhCCCCC
Q 039126           83 RHLNKFVARNLKHCRSLTNLSTSIH-LESLKKLILSGCSNLMSFPE---LFYNIKELSLDGTAIN---ELPSSIEYLSKL  155 (295)
Q Consensus        83 ~~l~~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~i~---~~~~~~~~~~~L  155 (295)
                      +.+-+|++|++++ +.+..+|..+. ++.|.+|++..+.....+|.   .+.+|++|.+......   ....++..+.+|
T Consensus       592 ~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L  670 (889)
T KOG4658|consen  592 GELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHL  670 (889)
T ss_pred             hhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccch
Confidence            9999999999998 78889999885 99999999998765555543   3557888877665422   112233344444


Q ss_pred             cEEecCCCc-------------------------CCcCcccccCCCCCCCeeeccCCCCCCCchhhhhc---cC-CCCcc
Q 039126          156 VILNLGNSS-------------------------RLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRN---LF-PCDLY  206 (295)
Q Consensus       156 ~~L~l~~~~-------------------------~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~---~~-~~~L~  206 (295)
                      +.+......                         .....+..+..+++|+.|.+.+|...+........   .. .+++.
T Consensus       671 ~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~  750 (889)
T KOG4658|consen  671 ENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLS  750 (889)
T ss_pred             hhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHH
Confidence            444433221                         11223344667888888888888765432221111   00 04555


Q ss_pred             eeecccccccccccccchhhhccCCcccEEeecCCCCChhhh
Q 039126          207 DIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNV  248 (295)
Q Consensus       207 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  248 (295)
                      .+.+.+|...+....     ....++|+.|.+..|..+++..
T Consensus       751 ~~~~~~~~~~r~l~~-----~~f~~~L~~l~l~~~~~~e~~i  787 (889)
T KOG4658|consen  751 KVSILNCHMLRDLTW-----LLFAPHLTSLSLVSCRLLEDII  787 (889)
T ss_pred             HHHhhccccccccch-----hhccCcccEEEEecccccccCC
Confidence            666667766666554     2478999999999999888763

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=9.9e-11  Score=96.84  Aligned_cols=178  Identities=19%  Similarity=0.205  Sum_probs=102.0

Q ss_pred             CCcEeecccccccc-ccccchhcccCCcEEccccCcCCceeCCcc-cCccccEEeccCCCCCccc-----CcCCCCCceE
Q 039126           63 NLESLNFQRYTSLL-ETHSSIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSF-----PELFYNIKEL  135 (295)
Q Consensus        63 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~-----~~~~~~L~~L  135 (295)
                      .|++||+++..... .+...+..+.+|+.|.+.++..-..+...+ .-.+|++|+++.|.-..+.     ...+..|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            36666666522111 122234556666666666532222222111 1345666666665433221     1233455566


Q ss_pred             EccCcccc-cc-chhhhC-CCCCcEEecCCCcCC---cCcccccCCCCCCCeeeccCCCCCC-CchhhhhccCCCCccee
Q 039126          136 SLDGTAIN-EL-PSSIEY-LSKLVILNLGNSSRL---EGLPSKICKLKSLQHLNLSCCSNLE-SFPNELRNLFPCDLYDI  208 (295)
Q Consensus       136 ~l~~~~i~-~~-~~~~~~-~~~L~~L~l~~~~~~---~~~p~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~~~L~~L  208 (295)
                      +++.|... .. ...+.+ -++|..|+++|+...   ..+..-..++++|..||+++|..+. .....+..+  +.|++|
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf--~~L~~l  343 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF--NYLQHL  343 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc--chheee
Confidence            66666543 11 111222 257888888886432   1222335589999999999986654 444556666  999999


Q ss_pred             ecccccccccccccchhhhccCCcccEEeecCCCCCh
Q 039126          209 EAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLH  245 (295)
Q Consensus       209 ~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  245 (295)
                      .++.|..+   +..........|+|.+|++.+|-.=+
T Consensus       344 SlsRCY~i---~p~~~~~l~s~psl~yLdv~g~vsdt  377 (419)
T KOG2120|consen  344 SLSRCYDI---IPETLLELNSKPSLVYLDVFGCVSDT  377 (419)
T ss_pred             ehhhhcCC---ChHHeeeeccCcceEEEEeccccCch
Confidence            99999653   33334444789999999999985543

>PLN03150 hypothetical protein; Provisional

Probab=98.78  E-value=2.4e-08  Score=94.50  Aligned_cols=104  Identities=18%  Similarity=0.176  Sum_probs=75.7

Q ss_pred             CceeEecCCCCcc-ccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccc
Q 039126           17 NLVSPEIPRNSIK-QLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLK   94 (295)
Q Consensus        17 ~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   94 (295)
                      .++.|+|++|.+. .+|..++.+++|+.|+|++|.+.+.+| .+..+++|++|++++|.....+|..+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            3677888888776 467778888888888888888877777 57888888888888877667777778888888888887


Q ss_pred             cCcCCceeCCccc--CccccEEeccCCC
Q 039126           95 HCRSLTNLSTSIH--LESLKKLILSGCS  120 (295)
Q Consensus        95 ~~~~l~~l~~~~~--~~~L~~L~l~~~~  120 (295)
                      +|.....+|..+.  ..++..+++.+|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCc
Confidence            7665556665442  2344555555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.77  E-value=7.5e-09  Score=81.38  Aligned_cols=104  Identities=21%  Similarity=0.243  Sum_probs=26.4

Q ss_pred             cccCCcEEccccCcCCceeCCcc-cCccccEEeccCCCCCcccC--cCCCCCceEEccCccccccchhh-hCCCCCcEEe
Q 039126           84 HLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFP--ELFYNIKELSLDGTAINELPSSI-EYLSKLVILN  159 (295)
Q Consensus        84 ~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~--~~~~~L~~L~l~~~~i~~~~~~~-~~~~~L~~L~  159 (295)
                      +..+++.|++.++ .++.+.... .+.+|+.|++++|.+. .+.  ..+.+|+.|++++|.++++...+ ..+++|++|+
T Consensus        17 n~~~~~~L~L~~n-~I~~Ie~L~~~l~~L~~L~Ls~N~I~-~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   17 NPVKLRELNLRGN-QISTIENLGATLDKLEVLDLSNNQIT-KLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccc-ccccccchhhhhcCCCEEECCCCCCc-cccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            3445666777663 333333222 3556666666666432 222  12345556666666666554433 2456666666


Q ss_pred             cCCCcCCcCcc--cccCCCCCCCeeeccCCCCC
Q 039126          160 LGNSSRLEGLP--SKICKLKSLQHLNLSCCSNL  190 (295)
Q Consensus       160 l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~  190 (295)
                      +++|. +..+.  ..+..+++|++|++.+|+..
T Consensus        95 L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCc-CCChHHhHHHHcCCCcceeeccCCccc
Confidence            66552 32221  22445555666666655543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.73  E-value=8.6e-08  Score=84.46  Aligned_cols=74  Identities=18%  Similarity=0.381  Sum_probs=44.3

Q ss_pred             hcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCceeCCcccCccccEE
Q 039126           35 VQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKL  114 (295)
Q Consensus        35 ~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L  114 (295)
                      +..+..++.|++++|. +..+|.+  -.+|++|.+++|..++.+|..+  .++|+.|++++|..+..+|     .+|+.|
T Consensus        48 ~~~~~~l~~L~Is~c~-L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L  117 (426)
T PRK15386         48 IEEARASGRLYIKDCD-IESLPVL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRSL  117 (426)
T ss_pred             HHHhcCCCEEEeCCCC-CcccCCC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----cccceE
Confidence            4456777777777774 3444522  2347777777777666666433  2466777777665555555     345555


Q ss_pred             eccC
Q 039126          115 ILSG  118 (295)
Q Consensus       115 ~l~~  118 (295)
                      ++..
T Consensus       118 ~L~~  121 (426)
T PRK15386        118 EIKG  121 (426)
T ss_pred             EeCC
Confidence            5554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.62  E-value=1.1e-08  Score=86.61  Aligned_cols=228  Identities=15%  Similarity=0.123  Sum_probs=144.9

Q ss_pred             CCCCceeEecCCCCccc-----cchhhcCCCCCcEEecCCCCCCC----cCC--------CCCCCCCCcEeecccccccc
Q 039126           14 RPKNLVSPEIPRNSIKQ-----LWKVVQRLVNLKSINLNHSEHLT----EIP--------SLSLATNLESLNFQRYTSLL   76 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~L~~~~~~~----~~~--------~~~~l~~L~~L~l~~~~~~~   76 (295)
                      ....++.+++++|.+..     +.+.+.+-+.|+..+++.- |.|    ++|        .+-.+++|++++||.|..-.
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            46778899999998762     4566677778888888775 233    233        14567789999999876554


Q ss_pred             cccc----chhcccCCcEEccccCcCCceeCC-------------cc-cCccccEEeccCCCCCcccC--------cCCC
Q 039126           77 ETHS----SIRHLNKFVARNLKHCRSLTNLST-------------SI-HLESLKKLILSGCSNLMSFP--------ELFY  130 (295)
Q Consensus        77 ~~~~----~~~~l~~L~~L~l~~~~~l~~l~~-------------~~-~~~~L~~L~l~~~~~~~~~~--------~~~~  130 (295)
                      ..++    .+..+..|++|.+.+|..-..-..             .. ..+.|+.+....|. +..-+        ...+
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHP  185 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhcc
Confidence            4443    356678888888887632221110             01 25678888887764 33222        2345


Q ss_pred             CCceEEccCcccc--c---cchhhhCCCCCcEEecCCCcCCcC----cccccCCCCCCCeeeccCCCCCCCchhhhhccC
Q 039126          131 NIKELSLDGTAIN--E---LPSSIEYLSKLVILNLGNSSRLEG----LPSKICKLKSLQHLNLSCCSNLESFPNELRNLF  201 (295)
Q Consensus       131 ~L~~L~l~~~~i~--~---~~~~~~~~~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~  201 (295)
                      +|+.+.+..|.|.  .   +...+.++++|+.|++..|.....    +...+..+++|+.|++++|.+.......+..-+
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al  265 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL  265 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence            7888888888775  2   244567888999999988865432    233466688889999999877665444332211


Q ss_pred             ---CCCcceeecccccccccccccchhhhccCCcccEEeecCCCC
Q 039126          202 ---PCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFK  243 (295)
Q Consensus       202 ---~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~  243 (295)
                         -++|+.|.+.+|..-.+-......-....+.|..|++++|.-
T Consensus       266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence               278888888886532221111111123578888888888853

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.60  E-value=1e-08  Score=85.29  Aligned_cols=13  Identities=23%  Similarity=0.309  Sum_probs=7.6

Q ss_pred             ccCcccccccCCC
Q 039126          282 SAQSNVNRDVREP  294 (295)
Q Consensus       282 ~~~~~~~~~~~~~  294 (295)
                      .++.+|++.+.-+
T Consensus       477 isgedvnPnvSgs  489 (490)
T KOG1259|consen  477 ISGEDVNPNVSGS  489 (490)
T ss_pred             cccccCCCCCCCC
Confidence            4566666666544

>PLN03150 hypothetical protein; Provisional

Probab=98.60  E-value=1.2e-07  Score=89.70  Aligned_cols=104  Identities=21%  Similarity=0.246  Sum_probs=70.6

Q ss_pred             ccEEeccCCCCCcccCcCC---CCCceEEccCcccc-ccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccC
Q 039126          111 LKKLILSGCSNLMSFPELF---YNIKELSLDGTAIN-ELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSC  186 (295)
Q Consensus       111 L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~  186 (295)
                      ++.|+|++|...+.+|..+   .+|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|..++++++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            5667777776666666543   35667777777776 6676777777777777777766666777777777777777777


Q ss_pred             CCCCCCchhhhhccCCCCcceeecccccc
Q 039126          187 CSNLESFPNELRNLFPCDLYDIEAHWCSS  215 (295)
Q Consensus       187 ~~~~~~~~~~l~~~~~~~L~~L~l~~~~~  215 (295)
                      |.+.+.+|..+... +.++..+++.+++.
T Consensus       500 N~l~g~iP~~l~~~-~~~~~~l~~~~N~~  527 (623)
T PLN03150        500 NSLSGRVPAALGGR-LLHRASFNFTDNAG  527 (623)
T ss_pred             CcccccCChHHhhc-cccCceEEecCCcc
Confidence            77777777776553 14556666665543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.59  E-value=1e-08  Score=85.27  Aligned_cols=126  Identities=24%  Similarity=0.215  Sum_probs=69.6

Q ss_pred             CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccc
Q 039126           15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLK   94 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   94 (295)
                      +..|+.+||++|.|+.+-+++.-.++++.|++++|.+. .+..+..+++|++||+++| .+.++..--..+-+.+.|.++
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehh
Confidence            44566677777777666666666677777777776643 3333566666666666663 333333222244455555555


Q ss_pred             cCcCCceeCCcccCccccEEeccCCCCCcccCcCCCCCceEEccCcccccc--chhhhCCCCCcEEecCCCc
Q 039126           95 HCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINEL--PSSIEYLSKLVILNLGNSS  164 (295)
Q Consensus        95 ~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~--~~~~~~~~~L~~L~l~~~~  164 (295)
                      + +.++.+.....+.+|..|++++|                     .|..+  ...++++|.|+++.+.+|+
T Consensus       361 ~-N~iE~LSGL~KLYSLvnLDl~~N---------------------~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  361 Q-NKIETLSGLRKLYSLVNLDLSSN---------------------QIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             h-hhHhhhhhhHhhhhheecccccc---------------------chhhHHHhcccccccHHHHHhhcCCC
Confidence            5 34444443334555555555554                     44422  2345666666666666663

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.58  E-value=5.1e-08  Score=63.02  Aligned_cols=58  Identities=22%  Similarity=0.342  Sum_probs=46.7

Q ss_pred             CCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccc
Q 039126           16 KNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYT   73 (295)
Q Consensus        16 ~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~   73 (295)
                      ++|++|++++|++..++ ..+.++++|++|++++|.+....+ .|..+++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            57889999999888887 466889999999999888754444 48888888888888864

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.51  E-value=1.6e-08  Score=85.47  Aligned_cols=210  Identities=12%  Similarity=0.081  Sum_probs=144.7

Q ss_pred             chhhcCCCCCcEEecCCCCCCCcC-----CCCCCCCCCcEeecccc---ccccccccc-------hhcccCCcEEccccC
Q 039126           32 WKVVQRLVNLKSINLNHSEHLTEI-----PSLSLATNLESLNFQRY---TSLLETHSS-------IRHLNKFVARNLKHC   96 (295)
Q Consensus        32 ~~~~~~l~~L~~L~L~~~~~~~~~-----~~~~~l~~L~~L~l~~~---~~~~~~~~~-------~~~l~~L~~L~l~~~   96 (295)
                      -+....+..++.+++++|.|..+-     +.+...++|+..+++.-   +....+|..       +...++|+++++++|
T Consensus        23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            345677889999999999874432     13677789999998862   122234433       345579999999998


Q ss_pred             cCCceeCCcc-----cCccccEEeccCCCCCcc----------------cCcCCCCCceEEccCccccc-----cchhhh
Q 039126           97 RSLTNLSTSI-----HLESLKKLILSGCSNLMS----------------FPELFYNIKELSLDGTAINE-----LPSSIE  150 (295)
Q Consensus        97 ~~l~~l~~~~-----~~~~L~~L~l~~~~~~~~----------------~~~~~~~L~~L~l~~~~i~~-----~~~~~~  150 (295)
                      ..-...+..+     .+.+|++|++.+|.....                -...-..|+.+...+|.+..     +...+.
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~  182 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ  182 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence            6555544433     388999999999964321                01122368889999987753     334566


Q ss_pred             CCCCCcEEecCCCcCCcC----cccccCCCCCCCeeeccCCCCCCCchhhhhccCC--CCcceeeccccccccccccc--
Q 039126          151 YLSKLVILNLGNSSRLEG----LPSKICKLKSLQHLNLSCCSNLESFPNELRNLFP--CDLYDIEAHWCSSLETLSGL--  222 (295)
Q Consensus       151 ~~~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~--~~L~~L~l~~~~~l~~~~~~--  222 (295)
                      ..+.|+.+.+..|+.-..    +...+.+|++|++|++.+|-+.......++..+|  ++|+.|++++|. ++.-...  
T Consensus       183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~  261 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAF  261 (382)
T ss_pred             hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHH
Confidence            778999999999864322    3345789999999999998776655555544343  899999999995 4432211  


Q ss_pred             chhhhccCCcccEEeecCCC
Q 039126          223 SIIFTKISRNTQSFDFINCF  242 (295)
Q Consensus       223 ~~~~~~~~~~L~~L~l~~c~  242 (295)
                      ..++....|+|+.+.+.+|.
T Consensus       262 ~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  262 VDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             HHHHhccCCCCceeccCcch
Confidence            12334568999999999974

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.49  E-value=2e-08  Score=86.87  Aligned_cols=231  Identities=19%  Similarity=0.249  Sum_probs=117.8

Q ss_pred             CCCCceeEecCCCC-ccc--cchhhcCCCCCcEEecCCCCCCCcCC--C-CCCCCCCcEeeccccccccc--cccchhcc
Q 039126           14 RPKNLVSPEIPRNS-IKQ--LWKVVQRLVNLKSINLNHSEHLTEIP--S-LSLATNLESLNFQRYTSLLE--THSSIRHL   85 (295)
Q Consensus        14 ~~~~L~~L~l~~~~-~~~--l~~~~~~l~~L~~L~L~~~~~~~~~~--~-~~~l~~L~~L~l~~~~~~~~--~~~~~~~l   85 (295)
                      ++++++.|++.+|. +++  +-..-..|++|++|++..|....+..  . ...+++|.++++++|..+..  +-...+++
T Consensus       162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~  241 (483)
T KOG4341|consen  162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC  241 (483)
T ss_pred             hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence            47777777777763 332  11223567777777777765433322  1 34577777777777755443  11112333


Q ss_pred             cCCcEE--------------------------ccccCcCCceeCCcc---cCccccEEeccCCCCCcccC-----cCCCC
Q 039126           86 NKFVAR--------------------------NLKHCRSLTNLSTSI---HLESLKKLILSGCSNLMSFP-----ELFYN  131 (295)
Q Consensus        86 ~~L~~L--------------------------~l~~~~~l~~l~~~~---~~~~L~~L~l~~~~~~~~~~-----~~~~~  131 (295)
                      ..++.+                          ++.+|..+++.....   ++..|+.+..++|...+..+     +...+
T Consensus       242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~  321 (483)
T KOG4341|consen  242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN  321 (483)
T ss_pred             hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence            333333                          333443333322111   24556666666654433211     23345


Q ss_pred             CceEEccCcc-cc--ccchhhhCCCCCcEEecCCCcCCcCc--ccccCCCCCCCeeeccCCCCCCCc-hhhh----hccC
Q 039126          132 IKELSLDGTA-IN--ELPSSIEYLSKLVILNLGNSSRLEGL--PSKICKLKSLQHLNLSCCSNLESF-PNEL----RNLF  201 (295)
Q Consensus       132 L~~L~l~~~~-i~--~~~~~~~~~~~L~~L~l~~~~~~~~~--p~~l~~l~~L~~L~l~~~~~~~~~-~~~l----~~~~  201 (295)
                      |+.|.++++. ++  .+..--.+++.|+.+++..|..+...  -..-.+++.|+++.+++|....+- ...+    ... 
T Consensus       322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~-  400 (483)
T KOG4341|consen  322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL-  400 (483)
T ss_pred             eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccc-
Confidence            6666666663 33  22222244566777776666544322  222235677777777777544322 1111    122 


Q ss_pred             CCCcceeecccccccccccccchhhhccCCcccEEeecCCCCChhhhH
Q 039126          202 PCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNVV  249 (295)
Q Consensus       202 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  249 (295)
                       ..|+.+.+++|+.+++-..   .....+++|+.+++..|-..+..+.
T Consensus       401 -~~l~~lEL~n~p~i~d~~L---e~l~~c~~Leri~l~~~q~vtk~~i  444 (483)
T KOG4341|consen  401 -EGLEVLELDNCPLITDATL---EHLSICRNLERIELIDCQDVTKEAI  444 (483)
T ss_pred             -cccceeeecCCCCchHHHH---HHHhhCcccceeeeechhhhhhhhh
Confidence             5667777777776555332   2234666777777777755555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.40  E-value=1.1e-06  Score=77.65  Aligned_cols=133  Identities=20%  Similarity=0.221  Sum_probs=84.5

Q ss_pred             CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEcc
Q 039126           14 RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNL   93 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   93 (295)
                      .+++++.|++++|.++.+|.   --..|+.|.+++|.-...+|..- .++|++|++++|..+..+|..      |+.|++
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L  119 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPES------VRSLEI  119 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccccc------cceEEe
Confidence            47889999999999998882   22369999999987766777421 368999999999888877754      555555


Q ss_pred             cc--CcCCceeCCcccCccccEEeccCCCCC--cccCcCC-CCCceEEccCccccccchhhhCCCCCcEEecCCC
Q 039126           94 KH--CRSLTNLSTSIHLESLKKLILSGCSNL--MSFPELF-YNIKELSLDGTAINELPSSIEYLSKLVILNLGNS  163 (295)
Q Consensus        94 ~~--~~~l~~l~~~~~~~~L~~L~l~~~~~~--~~~~~~~-~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~  163 (295)
                      .+  +..+..+|     ++|+.|.+.+++..  ..+|..+ .+|++|++.+|....+|..+  ..+|+.|+++.+
T Consensus       120 ~~n~~~~L~~LP-----ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~L--P~SLk~L~ls~n  187 (426)
T PRK15386        120 KGSATDSIKNVP-----NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKL--PESLQSITLHIE  187 (426)
T ss_pred             CCCCCcccccCc-----chHhheeccccccccccccccccCCcccEEEecCCCcccCcccc--cccCcEEEeccc
Confidence            54  22344444     46777777543211  1122222 35667777666554444322  246666666553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.38  E-value=4e-07  Score=58.79  Aligned_cols=58  Identities=29%  Similarity=0.443  Sum_probs=37.7

Q ss_pred             CCceEEccCccccccch-hhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCC
Q 039126          131 NIKELSLDGTAINELPS-SIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCS  188 (295)
Q Consensus       131 ~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  188 (295)
                      +|++|++++|.++.+|. .|..+++|+.|++++|.....-|..+.++++|++|++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45666677776776654 45667777777777764333333566777777777777764

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.28  E-value=3.9e-08  Score=85.10  Aligned_cols=96  Identities=11%  Similarity=0.089  Sum_probs=63.9

Q ss_pred             hCCCCCcEEecCCCcCCcCcc--cccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhh
Q 039126          150 EYLSKLVILNLGNSSRLEGLP--SKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFT  227 (295)
Q Consensus       150 ~~~~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  227 (295)
                      ..+..|+.++.++|..++..+  .-..++++|+.+-++.|...+..--...+-.+++|+.+++.+|....+-.  +....
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t--L~sls  368 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT--LASLS  368 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh--Hhhhc
Confidence            345678888888877665443  22347788888888888755443333222244888888888876555431  22233


Q ss_pred             ccCCcccEEeecCCCCChhh
Q 039126          228 KISRNTQSFDFINCFKLHQN  247 (295)
Q Consensus       228 ~~~~~L~~L~l~~c~~l~~~  247 (295)
                      ..++.|+.+.+++|...++.
T Consensus       369 ~~C~~lr~lslshce~itD~  388 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDE  388 (483)
T ss_pred             cCCchhccCChhhhhhhhhh
Confidence            57899999999999887777

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.20  E-value=8.1e-07  Score=74.04  Aligned_cols=176  Identities=17%  Similarity=0.199  Sum_probs=96.5

Q ss_pred             CCCceeEecCCCCccc---cchhhcCCCCCcEEecCCCCCCCcCCCC-CCCCCCcEeeccccccc-cccccchhcccCCc
Q 039126           15 PKNLVSPEIPRNSIKQ---LWKVVQRLVNLKSINLNHSEHLTEIPSL-SLATNLESLNFQRYTSL-LETHSSIRHLNKFV   89 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~---l~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~   89 (295)
                      +.+++.+||.+|.|++   +...+.++++|+.|+++.|.+...+..+ ...++|++|-+.+...- +.....+..++.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            6677778888887763   5555678888888888888766555544 46677888877663211 22223456677777


Q ss_pred             EEccccCcCCceeCCc-----ccCccccEEeccCCCC-----CcccCcCCCCCceEEccCccccccc--hhhhCCCCCcE
Q 039126           90 ARNLKHCRSLTNLSTS-----IHLESLKKLILSGCSN-----LMSFPELFYNIKELSLDGTAINELP--SSIEYLSKLVI  157 (295)
Q Consensus        90 ~L~l~~~~~l~~l~~~-----~~~~~L~~L~l~~~~~-----~~~~~~~~~~L~~L~l~~~~i~~~~--~~~~~~~~L~~  157 (295)
                      .|+++.|.. ..+-.+     -.-+.++.++...|..     ...+...++++..+.+..|++.+..  +....++.+..
T Consensus       150 elHmS~N~~-rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  150 ELHMSDNSL-RQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhccchh-hhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            777776421 111100     0122344455444421     1123345556666666666665332  22333455555


Q ss_pred             EecCCCcCCcCc--ccccCCCCCCCeeeccCCCCCCC
Q 039126          158 LNLGNSSRLEGL--PSKICKLKSLQHLNLSCCSNLES  192 (295)
Q Consensus       158 L~l~~~~~~~~~--p~~l~~l~~L~~L~l~~~~~~~~  192 (295)
                      |+++.+ .+...  -.++.+++.|.-|.++++++++.
T Consensus       229 LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  229 LNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             hhhccc-ccccHHHHHHHcCCchhheeeccCCccccc
Confidence            666554 23322  13455666666666666665543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.13  E-value=2.8e-07  Score=83.31  Aligned_cols=170  Identities=25%  Similarity=0.281  Sum_probs=79.5

Q ss_pred             CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccc
Q 039126           15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLK   94 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   94 (295)
                      +.+++.|++.+|.|..+...+..+.+|++|++++|. +..+..+..++.|+.|++++| .+..+. .+..+..|+.++++
T Consensus        94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSGN-LISDIS-GLESLKSLKLLDLS  170 (414)
T ss_pred             ccceeeeeccccchhhcccchhhhhcchheeccccc-cccccchhhccchhhheeccC-cchhcc-CCccchhhhcccCC
Confidence            455555555555555544434555555555555554 234444444445555555553 223222 22335555555555


Q ss_pred             cCcCCceeCC--cccCccccEEeccCCCCCccc-CcCCCCCceEEccCccccccchhhhCCC--CCcEEecCCCcCCcCc
Q 039126           95 HCRSLTNLST--SIHLESLKKLILSGCSNLMSF-PELFYNIKELSLDGTAINELPSSIEYLS--KLVILNLGNSSRLEGL  169 (295)
Q Consensus        95 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~i~~~~~~~~~~~--~L~~L~l~~~~~~~~~  169 (295)
                      +| .+..+..  ...+.+++.+.+.+|.+...- ......+..+++..|.++.+... ..+.  +|+.+++.++. +...
T Consensus       171 ~n-~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l-~~~~~~~L~~l~l~~n~-i~~~  247 (414)
T KOG0531|consen  171 YN-RIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGL-NELVMLHLRELYLSGNR-ISRS  247 (414)
T ss_pred             cc-hhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCc-ccchhHHHHHHhcccCc-cccc
Confidence            53 2222222  123445555555554321110 01111222334444444433211 1112  26777777763 4444


Q ss_pred             ccccCCCCCCCeeeccCCCCC
Q 039126          170 PSKICKLKSLQHLNLSCCSNL  190 (295)
Q Consensus       170 p~~l~~l~~L~~L~l~~~~~~  190 (295)
                      +..+..+..+..+++..+.+.
T Consensus       248 ~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  248 PEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             cccccccccccccchhhcccc
Confidence            345666777777887776543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.09  E-value=5.2e-06  Score=49.50  Aligned_cols=37  Identities=30%  Similarity=0.384  Sum_probs=30.7

Q ss_pred             CCceeEecCCCCccccchhhcCCCCCcEEecCCCCCC
Q 039126           16 KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHL   52 (295)
Q Consensus        16 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~   52 (295)
                      ++|++|++++|+|+++|..+++|++|+.|++++|.+.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            5789999999999999888899999999999999754

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.09  E-value=7.4e-07  Score=80.59  Aligned_cols=188  Identities=24%  Similarity=0.292  Sum_probs=118.7

Q ss_pred             CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCC-CCCCCCCcEeeccccccccccccchhcccCCcEEcc
Q 039126           15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPS-LSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNL   93 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   93 (295)
                      +..+..++++.|.+..+-..++.+..|..|++.+|.+. .+.. +..+++|++|++++| .++.+. .+..+..|+.|++
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNL  147 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchh-hcccchhhhhcchheecccc-cccccc-chhhccchhhhee
Confidence            55666777788877775555788888999999998753 4444 788889999999884 555543 4556667888888


Q ss_pred             ccCcCCceeCCcccCccccEEeccCCCCCcccC---cCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcc
Q 039126           94 KHCRSLTNLSTSIHLESLKKLILSGCSNLMSFP---ELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLP  170 (295)
Q Consensus        94 ~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p  170 (295)
                      .+ ..++.+...-.+.+|+.+++++|.+...-+   ....+++.+.+.+|.+..+.. +..+..+..+++..|. +..+-
T Consensus       148 ~~-N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~-~~~~~~l~~~~l~~n~-i~~~~  224 (414)
T KOG0531|consen  148 SG-NLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG-LDLLKKLVLLSLLDNK-ISKLE  224 (414)
T ss_pred             cc-CcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc-hHHHHHHHHhhccccc-ceecc
Confidence            88 455666555457888888888886554434   455577788888888875542 1223344444555542 22221


Q ss_pred             cccCCCC--CCCeeeccCCCCCCCchhhhhccCCCCcceeeccc
Q 039126          171 SKICKLK--SLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHW  212 (295)
Q Consensus       171 ~~l~~l~--~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~  212 (295)
                       .+..+.  +|+.+.++++.+.. .+..+...  ..+..|++.+
T Consensus       225 -~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~--~~l~~l~~~~  264 (414)
T KOG0531|consen  225 -GLNELVMLHLRELYLSGNRISR-SPEGLENL--KNLPVLDLSS  264 (414)
T ss_pred             -CcccchhHHHHHHhcccCcccc-cccccccc--ccccccchhh
Confidence             122233  37888888876543 22333333  5555555553

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.96  E-value=1.3e-07  Score=87.20  Aligned_cols=123  Identities=27%  Similarity=0.276  Sum_probs=81.7

Q ss_pred             CCcEeeccccccccccccchhcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccCc---CCCCCceEEccC
Q 039126           63 NLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPE---LFYNIKELSLDG  139 (295)
Q Consensus        63 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~  139 (295)
                      .|...+.++ +.+..++..+..++.++.|++++| +++.......++.|++|+|++|. +..+|.   .-..|..|.+++
T Consensus       165 ~L~~a~fsy-N~L~~mD~SLqll~ale~LnLshN-k~~~v~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  165 KLATASFSY-NRLVLMDESLQLLPALESLNLSHN-KFTKVDNLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             hHhhhhcch-hhHHhHHHHHHHHHHhhhhccchh-hhhhhHHHHhcccccccccccch-hccccccchhhhhheeeeecc
Confidence            455556655 567777777888888999999884 44555544458888899998874 444443   233578888888


Q ss_pred             ccccccchhhhCCCCCcEEecCCCcCCcCccc--ccCCCCCCCeeeccCCCCC
Q 039126          140 TAINELPSSIEYLSKLVILNLGNSSRLEGLPS--KICKLKSLQHLNLSCCSNL  190 (295)
Q Consensus       140 ~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~l~~~~~~  190 (295)
                      |.++++-. +.++.+|+.||+++|- +..+.+  -+..+..|+.|.+.+|++.
T Consensus       242 N~l~tL~g-ie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  242 NALTTLRG-IENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cHHHhhhh-HHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            88876643 4577788888888873 322211  1334666777888887643

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.69  E-value=6.9e-05  Score=44.62  Aligned_cols=33  Identities=39%  Similarity=0.664  Sum_probs=18.2

Q ss_pred             CCceEEccCccccccchhhhCCCCCcEEecCCC
Q 039126          131 NIKELSLDGTAINELPSSIEYLSKLVILNLGNS  163 (295)
Q Consensus       131 ~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~  163 (295)
                      +|++|++++|.++.+|..++.+++|+.|++++|
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence            355555555555555555556666666666655

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.60  E-value=7.7e-05  Score=71.20  Aligned_cols=100  Identities=27%  Similarity=0.385  Sum_probs=55.8

Q ss_pred             cCCcEEccccCcCCceeC-Ccc--cCccccEEeccCCCC----CcccCcCCCCCceEEccCccccccchhhhCCCCCcEE
Q 039126           86 NKFVARNLKHCRSLTNLS-TSI--HLESLKKLILSGCSN----LMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVIL  158 (295)
Q Consensus        86 ~~L~~L~l~~~~~l~~l~-~~~--~~~~L~~L~l~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L  158 (295)
                      .+|++|++++...+..-. ...  .+|+|++|.+++-.+    ..++...+++|..||+++++++.+ ..++++++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            567788887743322111 111  277777777776332    123455666777777777777666 345566666666


Q ss_pred             ecCCCcCCcCcc--cccCCCCCCCeeeccCC
Q 039126          159 NLGNSSRLEGLP--SKICKLKSLQHLNLSCC  187 (295)
Q Consensus       159 ~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~  187 (295)
                      .+.+-. .....  ..+.++++|+.||+|..
T Consensus       201 ~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  201 SMRNLE-FESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             hccCCC-CCchhhHHHHhcccCCCeeecccc
Confidence            665432 11111  23456677777777664

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.53  E-value=2.3e-05  Score=71.99  Aligned_cols=107  Identities=22%  Similarity=0.276  Sum_probs=48.9

Q ss_pred             CCCceeEecCCC-Cccc--cchhhcCCCCCcEEecCCC-CCCCcCC-----CCCCCCCCcEeeccccccccccc--cchh
Q 039126           15 PKNLVSPEIPRN-SIKQ--LWKVVQRLVNLKSINLNHS-EHLTEIP-----SLSLATNLESLNFQRYTSLLETH--SSIR   83 (295)
Q Consensus        15 ~~~L~~L~l~~~-~~~~--l~~~~~~l~~L~~L~L~~~-~~~~~~~-----~~~~l~~L~~L~l~~~~~~~~~~--~~~~   83 (295)
                      ++.|+.+.+.++ .+..  +-.....++.|+.|+++++ ......+     ....+.+|+.|++++|..++...  ....
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            455555555554 2332  3344455666666666552 1111111     12345556666666654333221  1122


Q ss_pred             cccCCcEEccccCcCCceeCCcc---cCccccEEeccCCCC
Q 039126           84 HLNKFVARNLKHCRSLTNLSTSI---HLESLKKLILSGCSN  121 (295)
Q Consensus        84 ~l~~L~~L~l~~~~~l~~l~~~~---~~~~L~~L~l~~~~~  121 (295)
                      .+++|+.|.+.+|..+++.....   .+++|+.|++++|..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            35566666655554433222111   255566666665543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.47  E-value=8.8e-05  Score=70.79  Aligned_cols=127  Identities=20%  Similarity=0.188  Sum_probs=70.6

Q ss_pred             CCCceeEecCCCCcc--ccchhh-cCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeeccccccccccccchhcccCCc
Q 039126           15 PKNLVSPEIPRNSIK--QLWKVV-QRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETHSSIRHLNKFV   89 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~--~l~~~~-~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (295)
                      -.+|+.||+++....  .=+..+ .-|+.|+.|.+++-.+..+-.  -...+++|..||+|++ .+..+ .++..+++|+
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq  198 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQ  198 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHH
Confidence            456777777765432  223334 346777777777755433322  2456777777777773 34444 4566777777


Q ss_pred             EEccccCcCCc--eeCCcccCccccEEeccCCCCCcc---------cCcCCCCCceEEccCcccc
Q 039126           90 ARNLKHCRSLT--NLSTSIHLESLKKLILSGCSNLMS---------FPELFYNIKELSLDGTAIN  143 (295)
Q Consensus        90 ~L~l~~~~~l~--~l~~~~~~~~L~~L~l~~~~~~~~---------~~~~~~~L~~L~l~~~~i~  143 (295)
                      .|.+.+-....  ++-..+.+++|+.|++|.......         -...+++|+.||.+++.+.
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            77665522221  122233477777777776432211         1234557777777766554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.47  E-value=2.4e-06  Score=79.18  Aligned_cols=100  Identities=24%  Similarity=0.276  Sum_probs=57.8

Q ss_pred             CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCC--CCCCCCcEeeccccccccccccchhcccCCcEEc
Q 039126           15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSL--SLATNLESLNFQRYTSLLETHSSIRHLNKFVARN   92 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   92 (295)
                      ++.++.|||++|++.++- .+..|++|++|||++|.+ ..+|.+  ..|+ |+.|.+++| .++.+- ++.++++|+.||
T Consensus       186 l~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc~-L~~L~lrnN-~l~tL~-gie~LksL~~LD  260 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCL-RHVPQLSMVGCK-LQLLNLRNN-ALTTLR-GIENLKSLYGLD  260 (1096)
T ss_pred             HHHhhhhccchhhhhhhH-HHHhcccccccccccchh-ccccccchhhhh-heeeeeccc-HHHhhh-hHHhhhhhhccc
Confidence            456666777777666654 566777777777777753 345532  2333 666777663 334332 456667777777


Q ss_pred             cccCcCCcee---CCcccCccccEEeccCCC
Q 039126           93 LKHCRSLTNL---STSIHLESLKKLILSGCS  120 (295)
Q Consensus        93 l~~~~~l~~l---~~~~~~~~L~~L~l~~~~  120 (295)
                      +++| .+...   .....+..|+.|+|.+|.
T Consensus       261 lsyN-ll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  261 LSYN-LLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             hhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            7763 22222   222235666667776664

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=6.8e-05  Score=62.85  Aligned_cols=87  Identities=13%  Similarity=0.047  Sum_probs=51.6

Q ss_pred             CCCCCcEEecCCCcCCc-CcccccCCCCCCCeeeccCCCCCC-CchhhhhccCCCCcceeeccccccccccccc--chhh
Q 039126          151 YLSKLVILNLGNSSRLE-GLPSKICKLKSLQHLNLSCCSNLE-SFPNELRNLFPCDLYDIEAHWCSSLETLSGL--SIIF  226 (295)
Q Consensus       151 ~~~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~  226 (295)
                      .++++..+.+..|+.-. ..-.....++.+..|.++.+++.. ...+.+..+  ++|..|+++..+....+...  .+.+
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f--~~l~dlRv~~~Pl~d~l~~~err~ll  274 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGF--PQLVDLRVSENPLSDPLRGGERRFLL  274 (418)
T ss_pred             hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCC--chhheeeccCCcccccccCCcceEEE
Confidence            35677777666663211 111234456667778888876544 234556666  99999999988866655432  2223


Q ss_pred             hccCCcccEEeec
Q 039126          227 TKISRNTQSFDFI  239 (295)
Q Consensus       227 ~~~~~~L~~L~l~  239 (295)
                      ...+++++.|+=+
T Consensus       275 IaRL~~v~vLNGs  287 (418)
T KOG2982|consen  275 IARLTKVQVLNGS  287 (418)
T ss_pred             EeeccceEEecCc
Confidence            3456666666544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.36  E-value=0.00041  Score=55.03  Aligned_cols=108  Identities=15%  Similarity=0.160  Sum_probs=64.8

Q ss_pred             CCCCCCCCceeEecCCCCccccchhhc-CCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccc-hhcccC
Q 039126           10 SSIIRPKNLVSPEIPRNSIKQLWKVVQ-RLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSS-IRHLNK   87 (295)
Q Consensus        10 p~~~~~~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~   87 (295)
                      |.+++...=+.+++++.++..+.. ++ -+.....+||++|.+ ..++.|..++.|..|.+++| .+..+... -..+++
T Consensus        13 pqy~~~~~e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl-~~l~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~   89 (233)
T KOG1644|consen   13 PQYINSVRERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDL-RKLDNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPN   89 (233)
T ss_pred             hhhhhhccccccccccccccchhh-ccccccccceecccccch-hhcccCCCccccceEEecCC-cceeeccchhhhccc
Confidence            444444445667777776554333 32 234566788888873 45667777888888888774 44444434 345567


Q ss_pred             CcEEccccCc--CCceeCCcccCccccEEeccCCC
Q 039126           88 FVARNLKHCR--SLTNLSTSIHLESLKKLILSGCS  120 (295)
Q Consensus        88 L~~L~l~~~~--~l~~l~~~~~~~~L~~L~l~~~~  120 (295)
                      |+.|.+.+|.  .+.++.....++.|++|.+-+|.
T Consensus        90 l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   90 LKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP  124 (233)
T ss_pred             cceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence            7888777742  22233333446777777776664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.25  E-value=8.8e-05  Score=61.43  Aligned_cols=196  Identities=18%  Similarity=0.224  Sum_probs=104.1

Q ss_pred             CCCceeEecCCCCccc-----cchhhcCCCCCcEEecCCCCCCCc----C--------CCCCCCCCCcEeeccccccccc
Q 039126           15 PKNLVSPEIPRNSIKQ-----LWKVVQRLVNLKSINLNHSEHLTE----I--------PSLSLATNLESLNFQRYTSLLE   77 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~L~~~~~~~~----~--------~~~~~l~~L~~L~l~~~~~~~~   77 (295)
                      ...+..+|||+|-|.+     +..-+..-.+|+..+++.-. .+.    +        +.+-+|++|+..++|.|.+...
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            5566777788776652     34445555667777766642 221    1        2246677777777777665555


Q ss_pred             cccc----hhcccCCcEEccccCcCCceeCCc---------------ccCccccEEeccCCCCCcccCc--------CCC
Q 039126           78 THSS----IRHLNKFVARNLKHCRSLTNLSTS---------------IHLESLKKLILSGCSNLMSFPE--------LFY  130 (295)
Q Consensus        78 ~~~~----~~~l~~L~~L~l~~~~~l~~l~~~---------------~~~~~L~~L~l~~~~~~~~~~~--------~~~  130 (295)
                      .|..    +..-..|.+|.+++|. +.-+...               ..-+.|+.+....|... ..|.        +=.
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~  185 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHE  185 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhc
Confidence            5543    3344667777777643 2221110               01355666666655422 1121        112


Q ss_pred             CCceEEccCcccc-c-c----chhhhCCCCCcEEecCCCcCCcC----cccccCCCCCCCeeeccCCCCCCCchhhhhc-
Q 039126          131 NIKELSLDGTAIN-E-L----PSSIEYLSKLVILNLGNSSRLEG----LPSKICKLKSLQHLNLSCCSNLESFPNELRN-  199 (295)
Q Consensus       131 ~L~~L~l~~~~i~-~-~----~~~~~~~~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-  199 (295)
                      +|+.+.+..|.|. . +    -..+..+.+|+.|++..|.....    +..++..++.|+.|.+.+|-.......++.. 
T Consensus       186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~  265 (388)
T COG5238         186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR  265 (388)
T ss_pred             CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence            5666777777665 1 1    11234556777777777644321    2233445666777777777555443333221 


Q ss_pred             ---cCCCCcceeecccc
Q 039126          200 ---LFPCDLYDIEAHWC  213 (295)
Q Consensus       200 ---~~~~~L~~L~l~~~  213 (295)
                         ..-++|..|...+.
T Consensus       266 f~e~~~p~l~~L~~~Yn  282 (388)
T COG5238         266 FNEKFVPNLMPLPGDYN  282 (388)
T ss_pred             hhhhcCCCccccccchh
Confidence               22256666665543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.19  E-value=0.00018  Score=59.69  Aligned_cols=182  Identities=12%  Similarity=0.036  Sum_probs=114.6

Q ss_pred             chhhcCCCCCcEEecCCCCCCCcCC-----CCCCCCCCcEeecccc---ccccccc-------cchhcccCCcEEccccC
Q 039126           32 WKVVQRLVNLKSINLNHSEHLTEIP-----SLSLATNLESLNFQRY---TSLLETH-------SSIRHLNKFVARNLKHC   96 (295)
Q Consensus        32 ~~~~~~l~~L~~L~L~~~~~~~~~~-----~~~~l~~L~~L~l~~~---~~~~~~~-------~~~~~l~~L~~L~l~~~   96 (295)
                      -..+.-+..++.++|+||.+..+-.     .+.+-.+|+..+++.-   .....++       ..+-.+++|+..++++|
T Consensus        23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN  102 (388)
T COG5238          23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN  102 (388)
T ss_pred             HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence            3445557888899999998654332     2566778888887752   1111222       23456788999999987


Q ss_pred             cCCceeCCcc-----cCccccEEeccCCCCCccc-----C------------cCCCCCceEEccCccccccchhh-----
Q 039126           97 RSLTNLSTSI-----HLESLKKLILSGCSNLMSF-----P------------ELFYNIKELSLDGTAINELPSSI-----  149 (295)
Q Consensus        97 ~~l~~l~~~~-----~~~~L~~L~l~~~~~~~~~-----~------------~~~~~L~~L~l~~~~i~~~~~~~-----  149 (295)
                      ..-..+|...     .-..|++|.+++|.. |.+     -            ..-+.|+......|.+...+...     
T Consensus       103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l  181 (388)
T COG5238         103 AFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALL  181 (388)
T ss_pred             ccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHH
Confidence            6666666543     256788899988753 211     1            11235677777777766444321     


Q ss_pred             hCCCCCcEEecCCCcCCcC-----cccccCCCCCCCeeeccCCCCCCCchhhhhccCC--CCcceeeccccc
Q 039126          150 EYLSKLVILNLGNSSRLEG-----LPSKICKLKSLQHLNLSCCSNLESFPNELRNLFP--CDLYDIEAHWCS  214 (295)
Q Consensus       150 ~~~~~L~~L~l~~~~~~~~-----~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~--~~L~~L~l~~~~  214 (295)
                      ..=..|+.+.+.+|+.-..     +-..+..+.+|+.||+++|-+.-.....++..+|  +.|+.|.+.+|-
T Consensus       182 ~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         182 ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence            1225788888888754322     1122456888999999998776655555555444  668888888874

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.18  E-value=0.00069  Score=53.77  Aligned_cols=103  Identities=17%  Similarity=0.161  Sum_probs=70.4

Q ss_pred             CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCC-CCCCCcEeeccccccccccc-cchhcccCCcEEc
Q 039126           15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLS-LATNLESLNFQRYTSLLETH-SSIRHLNKFVARN   92 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~   92 (295)
                      ......+||++|.+..+. -+.++.+|..|.++.|.+...-|.+. .+++|..|.+++|+..+--. ..+..++.|++|.
T Consensus        41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            445667889988877654 36688889999999998776667654 46779999998864333221 2366788888888


Q ss_pred             cccCcCCceeCCc-----ccCccccEEeccCC
Q 039126           93 LKHCRSLTNLSTS-----IHLESLKKLILSGC  119 (295)
Q Consensus        93 l~~~~~l~~l~~~-----~~~~~L~~L~l~~~  119 (295)
                      +-+|+ ++..+..     ..+++|+.|+...-
T Consensus       120 ll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  120 LLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence            88753 3332221     13788888888653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.14  E-value=3.4e-05  Score=57.37  Aligned_cols=77  Identities=27%  Similarity=0.372  Sum_probs=36.0

Q ss_pred             ccccEEeccCCCCCcccCcC----CCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeec
Q 039126          109 ESLKKLILSGCSNLMSFPEL----FYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNL  184 (295)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~----~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l  184 (295)
                      ..|+..+|++|. ...+|..    ++.++.+++++|.++++|.++..++.|+.++++.|. +...|+.+..+.++-.|+.
T Consensus        53 ~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   53 YELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             ceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcC
Confidence            344445555543 2233322    223445555555555555555555555555555542 3334444444445555554


Q ss_pred             cCC
Q 039126          185 SCC  187 (295)
Q Consensus       185 ~~~  187 (295)
                      .+|
T Consensus       131 ~~n  133 (177)
T KOG4579|consen  131 PEN  133 (177)
T ss_pred             CCC
Confidence            443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.12  E-value=0.00034  Score=57.57  Aligned_cols=102  Identities=21%  Similarity=0.188  Sum_probs=61.2

Q ss_pred             CCCceeEecCCCCccccchhhcCCCCCcEEecCCC--CCCCcCCC-CCCCCCCcEeecccccccc-ccccchhcccCCcE
Q 039126           15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHS--EHLTEIPS-LSLATNLESLNFQRYTSLL-ETHSSIRHLNKFVA   90 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~--~~~~~~~~-~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~   90 (295)
                      ...|+.+.+.+..++.+. .+..+++||+|.++.|  ...+.++. ...+++|+++++++|..-. +.-..+..+.+|..
T Consensus        42 ~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             ccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            555666666666555432 2456778888888888  44444442 4556888888888854221 11234667778888


Q ss_pred             EccccCcCCceeCCc---cc--CccccEEeccC
Q 039126           91 RNLKHCRSLTNLSTS---IH--LESLKKLILSG  118 (295)
Q Consensus        91 L~l~~~~~l~~l~~~---~~--~~~L~~L~l~~  118 (295)
                      |++.+|.... +...   .+  +++|++|+-..
T Consensus       121 Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  121 LDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhcccCCccc-cccHHHHHHHHhhhhccccccc
Confidence            8887764333 2211   11  67777766544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=9.4e-05  Score=61.44  Aligned_cols=59  Identities=22%  Similarity=0.188  Sum_probs=25.5

Q ss_pred             CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCC--cCCCCCCCCCCcEeeccccc
Q 039126           14 RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLT--EIPSLSLATNLESLNFQRYT   73 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~--~~~~~~~l~~L~~L~l~~~~   73 (295)
                      .++.|++|.|+-|+|+.+. .+.+|++|+.|.|..|.+..  ++..+.++++|+.|.|..|.
T Consensus        39 kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP   99 (388)
T ss_pred             hcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence            3444555555555444442 23444555555554443211  11123444445555444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.54  E-value=0.0004  Score=51.80  Aligned_cols=103  Identities=14%  Similarity=0.114  Sum_probs=70.2

Q ss_pred             CCceeEecCCCCccccc---hhhcCCCCCcEEecCCCCCCCcCCCC-CCCCCCcEeeccccccccccccchhcccCCcEE
Q 039126           16 KNLVSPEIPRNSIKQLW---KVVQRLVNLKSINLNHSEHLTEIPSL-SLATNLESLNFQRYTSLLETHSSIRHLNKFVAR   91 (295)
Q Consensus        16 ~~L~~L~l~~~~~~~l~---~~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   91 (295)
                      .-+..+||+.|.+..++   ..+.+...|+..+|++|.+-...+.| .+++.++.|++++ +.+..+|..+..|+.|+.+
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSL  105 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhc
Confidence            34556788888776554   44566677777888888764333344 4566788888887 5777888888888888888


Q ss_pred             ccccCcCCceeCCcc-cCccccEEeccCCC
Q 039126           92 NLKHCRSLTNLSTSI-HLESLKKLILSGCS  120 (295)
Q Consensus        92 ~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~  120 (295)
                      +++.| .+...|.-+ .+.++-+|+..+|.
T Consensus       106 Nl~~N-~l~~~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen  106 NLRFN-PLNAEPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             ccccC-ccccchHHHHHHHhHHHhcCCCCc
Confidence            88884 344444433 36677777777664

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.49  E-value=0.00017  Score=59.94  Aligned_cols=98  Identities=14%  Similarity=0.166  Sum_probs=74.0

Q ss_pred             CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeecccccccccccc--chhcccCCcEEc
Q 039126           15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHS--SIRHLNKFVARN   92 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~   92 (295)
                      +.+++.|+..+|.+.++.. ..+|+.|++|.|+-|.+ ..+..+..|++|++|+|.. +.+..+.+  .+.++++|+.|.
T Consensus        18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkI-ssL~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKI-SSLAPLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCccHHHH-HHhcccceeEEeecccc-ccchhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHh
Confidence            6678899999999988753 47899999999999984 5666788999999999998 46666664  367899999999


Q ss_pred             cccCcCCceeCCcc------cCccccEEe
Q 039126           93 LKHCRSLTNLSTSI------HLESLKKLI  115 (295)
Q Consensus        93 l~~~~~l~~l~~~~------~~~~L~~L~  115 (295)
                      |..|+=...-+..-      .+++|+.|+
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            98865433333221      167777764

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.49  E-value=0.002  Score=53.14  Aligned_cols=82  Identities=22%  Similarity=0.222  Sum_probs=41.7

Q ss_pred             CccccEEeccCCCCCcc-cCcCCCCCceEEccCc--ccc-ccchhhhCCCCCcEEecCCCcCC--cCcccccCCCCCCCe
Q 039126          108 LESLKKLILSGCSNLMS-FPELFYNIKELSLDGT--AIN-ELPSSIEYLSKLVILNLGNSSRL--EGLPSKICKLKSLQH  181 (295)
Q Consensus       108 ~~~L~~L~l~~~~~~~~-~~~~~~~L~~L~l~~~--~i~-~~~~~~~~~~~L~~L~l~~~~~~--~~~p~~l~~l~~L~~  181 (295)
                      +..|+.+++.++..++- --+.+++|++|.++.|  +++ .++.-...+++|+++++++|+.-  ..++ .+..+++|.+
T Consensus        42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~  120 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKS  120 (260)
T ss_pred             ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhh
Confidence            34455555554432211 1123446677777777  443 34333344577777777776422  1222 2445566667


Q ss_pred             eeccCCCCC
Q 039126          182 LNLSCCSNL  190 (295)
Q Consensus       182 L~l~~~~~~  190 (295)
                      |++.+|+..
T Consensus       121 Ldl~n~~~~  129 (260)
T KOG2739|consen  121 LDLFNCSVT  129 (260)
T ss_pred             hhcccCCcc
Confidence            777766544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.42  E-value=0.0032  Score=57.79  Aligned_cols=64  Identities=22%  Similarity=0.277  Sum_probs=26.4

Q ss_pred             CCCCcEEecCCCcCCcCcc-ccc-CCCCCCCeeeccCCC-CCCCchhhhhccCCCCcceeeccccccc
Q 039126          152 LSKLVILNLGNSSRLEGLP-SKI-CKLKSLQHLNLSCCS-NLESFPNELRNLFPCDLYDIEAHWCSSL  216 (295)
Q Consensus       152 ~~~L~~L~l~~~~~~~~~p-~~l-~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~~~L~~L~l~~~~~l  216 (295)
                      +++|+.++++++..+...- ..+ ..|+.|++|.+..|. ..+.....+.. .+++|++|++++|..+
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~-~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE-RCPSLRELDLSGCHGL  308 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH-hcCcccEEeeecCccc
Confidence            3455555555544222211 111 125555555555544 22222222222 1144555555555544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.33  E-value=0.0017  Score=32.21  Aligned_cols=21  Identities=14%  Similarity=0.191  Sum_probs=15.6

Q ss_pred             CceeEecCCCCccccchhhcC
Q 039126           17 NLVSPEIPRNSIKQLWKVVQR   37 (295)
Q Consensus        17 ~L~~L~l~~~~~~~l~~~~~~   37 (295)
                      +|++||+++|+++.+|..+++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            477888888888877776654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.15  E-value=0.0025  Score=50.68  Aligned_cols=89  Identities=15%  Similarity=0.189  Sum_probs=51.3

Q ss_pred             CCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCC-CchhhhhccCCCCcceeecccccccccccccchhhhccCCc
Q 039126          154 KLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLE-SFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRN  232 (295)
Q Consensus       154 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  232 (295)
                      .++.++.+++.....--+-+..++.++.|.+.+|.-.+ ...+.++. .-++|+.|+|++|+.+++-..   +....+++
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~GL---~~L~~lkn  177 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGGL---ACLLKLKN  177 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhHH---HHHHHhhh
Confidence            35666666554333333445666777777777775443 23333444 227777777777777666332   33356677


Q ss_pred             ccEEeecCCCCChh
Q 039126          233 TQSFDFINCFKLHQ  246 (295)
Q Consensus       233 L~~L~l~~c~~l~~  246 (295)
                      |+.|.+.+.+....
T Consensus       178 Lr~L~l~~l~~v~~  191 (221)
T KOG3864|consen  178 LRRLHLYDLPYVAN  191 (221)
T ss_pred             hHHHHhcCchhhhc
Confidence            77777776654443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.25  E-value=0.01  Score=29.39  Aligned_cols=15  Identities=33%  Similarity=0.676  Sum_probs=6.3

Q ss_pred             ceEEccCccccccch
Q 039126          133 KELSLDGTAINELPS  147 (295)
Q Consensus       133 ~~L~l~~~~i~~~~~  147 (295)
                      ++|++++|.++.+|.
T Consensus         3 ~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    3 EYLDLSGNNLTSIPS   17 (22)
T ss_dssp             SEEEETSSEESEEGT
T ss_pred             cEEECCCCcCEeCCh
Confidence            344444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.04  E-value=0.014  Score=26.87  Aligned_cols=17  Identities=24%  Similarity=0.321  Sum_probs=8.0

Q ss_pred             CCceeEecCCCCccccc
Q 039126           16 KNLVSPEIPRNSIKQLW   32 (295)
Q Consensus        16 ~~L~~L~l~~~~~~~l~   32 (295)
                      ++|+.|++++|+++++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            35666666666665554

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.38  E-value=0.0075  Score=48.02  Aligned_cols=75  Identities=12%  Similarity=0.190  Sum_probs=43.8

Q ss_pred             CCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCChhhhHhhHHHHHH
Q 039126          179 LQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNVVQGIINNAQ  257 (295)
Q Consensus       179 L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~  257 (295)
                      ++.++.+++.+..+..+.+.++  ++++.|.+.+|..+.+-..  ..+.+..++|+.|+++.|+.+++-....+.....
T Consensus       103 IeaVDAsds~I~~eGle~L~~l--~~i~~l~l~~ck~~dD~~L--~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn  177 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDL--RSIKSLSLANCKYFDDWCL--ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN  177 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhcc--chhhhheeccccchhhHHH--HHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence            4566666666666666666666  6666666666665554433  2233456666666666666666665555444443

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=93.83  E-value=0.061  Score=27.72  Aligned_cols=23  Identities=17%  Similarity=0.430  Sum_probs=16.1

Q ss_pred             CCcccEEeecCCCCChhhhHhhH
Q 039126          230 SRNTQSFDFINCFKLHQNVVQGI  252 (295)
Q Consensus       230 ~~~L~~L~l~~c~~l~~~~~~~~  252 (295)
                      +++|++|++++|+++++.....+
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHH
Confidence            46778888888888777755443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=91.28  E-value=1.2  Score=32.65  Aligned_cols=96  Identities=25%  Similarity=0.363  Sum_probs=43.6

Q ss_pred             CCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeecccccccccccc-chhcccCCc
Q 039126           14 RPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETHS-SIRHLNKFV   89 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~   89 (295)
                      .+++|+.+.+.. .+..++ ..+..++.|+.+.+..+  ...++  .+..++.++.+.+..  .+..++. .+..+++++
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTEC
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--ccccccccccccccccc
Confidence            466777777764 455665 34567777888877764  23333  467776777777754  3333332 345566777


Q ss_pred             EEccccCcCCceeCCccc--CccccEEecc
Q 039126           90 ARNLKHCRSLTNLSTSIH--LESLKKLILS  117 (295)
Q Consensus        90 ~L~l~~~~~l~~l~~~~~--~~~L~~L~l~  117 (295)
                      .+++..  .+..++....  + .|+.+.+.
T Consensus        85 ~i~~~~--~~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   85 NIDIPS--NITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             EEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred             ccccCc--cccEEchhhhcCC-CceEEEEC
Confidence            766643  2444443321  3 55555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=91.25  E-value=1.3  Score=32.44  Aligned_cols=79  Identities=19%  Similarity=0.325  Sum_probs=35.9

Q ss_pred             hhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeecccccccccccc-chhcccCCcEEccccCcCCceeCCcc--cC
Q 039126           34 VVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETHS-SIRHLNKFVARNLKHCRSLTNLSTSI--HL  108 (295)
Q Consensus        34 ~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~--~~  108 (295)
                      .+.++.+|+.+.+...  ...++  .|..+.+|+.+.+..  .+..++. .+..+++++.+.+.+  .+..++...  .+
T Consensus         7 ~F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~   80 (129)
T PF13306_consen    7 AFYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNC   80 (129)
T ss_dssp             TTTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-
T ss_pred             HHhCCCCCCEEEECCC--eeEeChhhcccccccccccccc--cccccceeeeecccccccccccc--ccccccccccccc
Confidence            3466777777777643  22333  366777777777765  2444443 355565666666643  333444332  15


Q ss_pred             ccccEEeccC
Q 039126          109 ESLKKLILSG  118 (295)
Q Consensus       109 ~~L~~L~l~~  118 (295)
                      .+|+.+.+..
T Consensus        81 ~~l~~i~~~~   90 (129)
T PF13306_consen   81 TNLKNIDIPS   90 (129)
T ss_dssp             TTECEEEETT
T ss_pred             ccccccccCc
Confidence            5666665543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.12  E-value=0.2  Score=25.67  Aligned_cols=21  Identities=19%  Similarity=0.150  Sum_probs=14.9

Q ss_pred             CCCceeEecCCCCccccchhh
Q 039126           15 PKNLVSPEIPRNSIKQLWKVV   35 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~~~~   35 (295)
                      +++|+.|+|++|.+..+|..+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            356778888888877777543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.12  E-value=0.2  Score=25.67  Aligned_cols=21  Identities=19%  Similarity=0.150  Sum_probs=14.9

Q ss_pred             CCCceeEecCCCCccccchhh
Q 039126           15 PKNLVSPEIPRNSIKQLWKVV   35 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~~~~   35 (295)
                      +++|+.|+|++|.+..+|..+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            356778888888877777543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.60  E-value=0.31  Score=24.35  Aligned_cols=14  Identities=29%  Similarity=0.254  Sum_probs=5.7

Q ss_pred             CCCCeeeccCCCCC
Q 039126          177 KSLQHLNLSCCSNL  190 (295)
Q Consensus       177 ~~L~~L~l~~~~~~  190 (295)
                      ++|++|++++|.+.
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34455555554433

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=80.41  E-value=0.038  Score=45.18  Aligned_cols=82  Identities=12%  Similarity=0.098  Sum_probs=60.4

Q ss_pred             CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEc
Q 039126           14 RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARN   92 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   92 (295)
                      ..+..+.||++.|.+..+...++-++.|..|+++.|.+ ...| ++.....++++++.. +..+..|...+..+++++++
T Consensus        40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNE  117 (326)
T ss_pred             ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhh
Confidence            46777888888887776666677777788888887763 4455 677777777777766 56677887888888888888


Q ss_pred             cccCc
Q 039126           93 LKHCR   97 (295)
Q Consensus        93 l~~~~   97 (295)
                      .-++.
T Consensus       118 ~k~~~  122 (326)
T KOG0473|consen  118 QKKTE  122 (326)
T ss_pred             hccCc
Confidence            77654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	295
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		5e-04

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 36  QRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKH 95
           Q LVNL+S+ L  +   +   S++   NL+SL   R + L     +I HL K    +L+ 
Sbjct: 180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKI-RNSPLSALGPAIHHLPKLEELDLRG 238
Query: 96  CRSLTNLSTSIHLES-LKKLILSGCSNLMSFP---ELFYNIKELSLDGTA-INELPSSIE 150
           C +L N        + LK+LIL  CSNL++ P        +++L L G   ++ LPS I 
Sbjct: 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298
Query: 151 YL 152
            L
Sbjct: 299 QL 300

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	295
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (253), Expect = 4e-25
 Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 19/218 (8%)

Query: 16  KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTS 74
              V+ E+    + Q      RL +L+ + ++ +  L E+P ++     LE+L       
Sbjct: 81  PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTL-ARNP 138

Query: 75  LLETHSSIRHLNKFVARNLKHCRSLTNLSTSI----------HLESLKKLILSGCSNLMS 124
           L    +SI  LN+    +++ C  LT L   +           L +L+ L L   + + S
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE-WTGIRS 197

Query: 125 FPELFY---NIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQH 181
            P       N+K L +  + ++ L  +I +L KL  L+L   + L   P        L+ 
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257

Query: 182 LNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETL 219
           L L  CSNL + P ++  L    L  ++   C +L  L
Sbjct: 258 LILKDCSNLLTLPLDIHRL--TQLEKLDLRGCVNLSRL 293

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.3 bits (217), Expect = 5e-20
 Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 19/216 (8%)

Query: 1   WHGCPFKSL-SSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SL 58
               P         R  +L    I    + +L   +Q+   L+++ L  +  L  +P S+
Sbjct: 88  LRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASI 146

Query: 59  SLATNLESLNFQRYTSL---------LETHSSIRHLNKFVARNLKHCRSLTNLSTSI-HL 108
           +    L  L+ +    L          +     + L    +  L+    + +L  SI +L
Sbjct: 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANL 205

Query: 109 ESLKKLILSGCSNLMSFPELF---YNIKELSLDG-TAINELPSSIEYLSKLVILNLGNSS 164
           ++LK L +     L +          ++EL L G TA+   P      + L  L L + S
Sbjct: 206 QNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

Query: 165 RLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNL 200
            L  LP  I +L  L+ L+L  C NL   P+ +  L
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.5 bits (207), Expect = 1e-18
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 12/190 (6%)

Query: 35  VQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNL 93
                  +++    S  L      LS      + +  R+ S     +S  +  +   R  
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS--NNPQIETRTG 65

Query: 94  KHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIK---ELSLDGTAINELPSSIE 150
           +  ++  +L           L L     L  FP+  + +     +++D   + ELP +++
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQ 124

Query: 151 YLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEA 210
             + L  L L  +  L  LP+ I  L  L+ L++  C  L   P  L +         E 
Sbjct: 125 QFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASG----EH 179

Query: 211 HWCSSLETLS 220
               +L++L 
Sbjct: 180 QGLVNLQSLR 189

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 18/129 (13%), Positives = 40/129 (31%), Gaps = 6/129 (4%)

Query: 75  LLETHSSIRHLNKFVARNLKHCRSLTNLSTSIH-LESLKKLILSGCSNLMSFPELFYNIK 133
           +  +H    H +       +   +L      +   +       +   +         N +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-NNPQ 59

Query: 134 ELSLDGTAINELPSSIEYLS--KLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLE 191
             +  G A+      +E  +    V L L +   L   P +  +L  LQH+ +     L 
Sbjct: 60  IETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAG-LM 117

Query: 192 SFPNELRNL 200
             P+ ++  
Sbjct: 118 ELPDTMQQF 126

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 8/147 (5%)

Query: 30  QLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKF 88
                 Q LVNL+S+ L  +  +  +P S++   NL+SL   R + L     +I HL K 
Sbjct: 174 DASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKI-RNSPLSALGPAIHHLPKL 231

Query: 89  VARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPELFYNIK---ELSLDG-TAIN 143
              +L+ C +L N          LK+LIL  CSNL++ P   + +    +L L G   ++
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 144 ELPSSIEYLSKLVILNLGNSSRLEGLP 170
            LPS I  L    I+ +    + +   
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 34/134 (25%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 4   CPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLAT 62
               +        NL S  +    I+ L   +  L NLKS+ + +S  L+ +  ++    
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLP 229

Query: 63  NLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSN 121
            LE L+ +  T+L                 LK C +L  L   I  L  L+KL L GC N
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289

Query: 122 LMSFPELFYNIKEL 135
           L   P L   +   
Sbjct: 290 LSRLPSLIAQLPAN 303

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.1 bits (156), Expect = 1e-11
 Identities = 42/174 (24%), Positives = 61/174 (35%), Gaps = 24/174 (13%)

Query: 40  NLKSINLNHSEHLTEIPSLSLATNLESLNFQ--RYTSLLETHSSIRHLN------KFVAR 91
               +N+  S  LT +P   L  ++ +L       TSL      +R L         +  
Sbjct: 41  GNAVLNVGES-GLTTLPD-CLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPV 98

Query: 92  NLKHCRSLTNLSTSIH-----LESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELP 146
                  L+  S  +         L KL + G   L S P L   ++ELS+    +  LP
Sbjct: 99  LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLP 157

Query: 147 SSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNL 200
           +    L KL   N     +L  LP        LQ L++S    L S P     L
Sbjct: 158 ALPSELCKLWAYNN----QLTSLPMLPS---GLQELSVSDN-QLASLPTLPSEL 203

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 47/188 (25%), Positives = 69/188 (36%), Gaps = 26/188 (13%)

Query: 15  PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQ--RY 72
           P  L + E+  N +  L  +   L+ L   +     HL  +P     + L  L     + 
Sbjct: 80  PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPL-THLPALP-----SGLCKLWIFGNQL 133

Query: 73  TSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNI 132
           TSL      ++ L+  V+ N      L +L        L KL       L S P L   +
Sbjct: 134 TSLPVLPPGLQELS--VSDN-----QLASLPALP--SELCKLWAYNN-QLTSLPMLPSGL 183

Query: 133 KELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLES 192
           +ELS+    +  LP+    L KL   N     RL  LP+       L+ L +S    L S
Sbjct: 184 QELSVSDNQLASLPTLPSELYKLWAYNN----RLTSLPALPS---GLKELIVSGN-RLTS 235

Query: 193 FPNELRNL 200
            P     L
Sbjct: 236 LPVLPSEL 243

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.4 bits (136), Expect = 4e-09
 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 10/112 (8%)

Query: 96  CRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKL 155
              LT L   +    +  L++    NL S P L   ++ L + G  +  LP     L +L
Sbjct: 49  ESGLTTLPDCL-PAHITTLVIPDN-NLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLEL 106

Query: 156 VILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYD 207
            I +   +  L  LPS       L  L +     L S P     L    + D
Sbjct: 107 SIFSNPLTH-LPALPS------GLCKLWIFGN-QLTSLPVLPPGLQELSVSD 150

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.7 bits (121), Expect = 3e-07
 Identities = 47/237 (19%), Positives = 83/237 (35%), Gaps = 33/237 (13%)

Query: 38  LVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHC 96
              L+ ++++ +  L  +P   S    L + N  R TSL    S ++ L   V+ N    
Sbjct: 180 PSGLQELSVSDN-QLASLPTLPSELYKLWAYN-NRLTSLPALPSGLKELI--VSGN---- 231

Query: 97  RSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLV 156
             LT+L        LK+L++SG   L S P L   +  LS+    +  LP S+ +LS   
Sbjct: 232 -RLTSLPVLP--SELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSET 287

Query: 157 ILNL-GNSSRLEGLPSKIC-KLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCS 214
            +NL GN   L     +   ++ S    +        +  +  R      L+   A W  
Sbjct: 288 TVNLEGN--PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRA--LHLAAADWLV 343

Query: 215 --------------SLETLSGLSIIFTKISRNTQSFDFINCFKLHQNVVQGIINNAQ 257
                                       + R +++ +FI        +   +   A+
Sbjct: 344 PAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAE 400

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 59.2 bits (143), Expect = 4e-10
 Identities = 32/201 (15%), Positives = 61/201 (30%), Gaps = 27/201 (13%)

Query: 4   CPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATN 63
            P  +  S+              +    +    +         N +E ++ +    +   
Sbjct: 5   LPINNNFSLS---QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLI-NQ 60

Query: 64  LESLNFQRYTSLLETHSSIRHLNKFVARNLKH----CRSLTNLSTSIHLESLKKLILSGC 119
              L             ++  L   +   +        +L +L       SL+ L     
Sbjct: 61  FSELQLN--------RLNLSSLPDNLPPQITVLEITQNALISLPELP--ASLEYLDACDN 110

Query: 120 SNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSL 179
             L + PEL  ++K L +D   +  LP        L  +N  N ++L  LP       SL
Sbjct: 111 -RLSTLPELPASLKHLDVDNNQLTMLPELPA---LLEYINADN-NQLTMLPELPT---SL 162

Query: 180 QHLNLSCCSNLESFPNELRNL 200
           + L++     L   P    +L
Sbjct: 163 EVLSVRNN-QLTFLPELPESL 182

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.7 bits (134), Expect = 5e-09
 Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 22/163 (13%)

Query: 40  NLKSINLNHSEHLTEIPSLSLATNLESLN--FQRYTSLLETHSSIRHL----NKFVA--- 90
            +  + +     L  +P L    +LE L+    R ++L E  +S++HL    N+      
Sbjct: 81  QITVLEITQ-NALISLPELP--ASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPE 137

Query: 91  --RNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELP 146
               L++  +  N  T +     SL+ L +     L   PEL  +++ L +    +  LP
Sbjct: 138 LPALLEYINADNNQLTMLPELPTSLEVLSVRNN-QLTFLPELPESLEALDVSTNLLESLP 196

Query: 147 SSIEYLSKL----VILNLGNSSRLEGLPSKICKLKSLQHLNLS 185
           +            +       +R+  +P  I  L     + L 
Sbjct: 197 AVPVRNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILE 238

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 44/213 (20%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 2   HGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLA 61
                + L  +     L   ++  NS+K+L  +     +L+ I   ++  L E+P L   
Sbjct: 139 SNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNN-QLEELPELQNL 194

Query: 62  TNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSN 121
             L ++      SL +       L   VA N      L  L    +L  L  +       
Sbjct: 195 PFLTAIYA-DNNSLKKLPDLPLSLESIVAGNNI----LEELPELQNLPFLTTIYADNN-L 248

Query: 122 LMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKL----- 176
           L + P+L  +++ L++    + +LP   + L+ L +     S  L  LP  +  L     
Sbjct: 249 LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG-LSELPPNLYYLNASSN 307

Query: 177 ---------KSLQHLNLSCCSNLESFPNELRNL 200
                     SL+ LN+S    L   P     L
Sbjct: 308 EIRSLCDLPPSLEELNVSNN-KLIELPALPPRL 339

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 41/202 (20%), Positives = 75/202 (37%), Gaps = 28/202 (13%)

Query: 15  PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSE----------------HLTEIPSL 58
           P +L S     NS+ +L ++ Q L +L   N N                    L ++P L
Sbjct: 90  PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPEL 149

Query: 59  SLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSG 118
             ++ L+ ++     SL +       L    A N +    L  L    +L  L  +    
Sbjct: 150 QNSSFLKIIDV-DNNSLKKLPDLPPSLEFIAAGNNQ----LEELPELQNLPFLTAIYADN 204

Query: 119 CSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKS 178
             +L   P+L  +++ +      + ELP  ++ L  L  +   N + L+ LP     L++
Sbjct: 205 N-SLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADN-NLLKTLPDLPPSLEA 261

Query: 179 LQHLNLSCCSNLESFPNELRNL 200
           L   +      L   P   ++L
Sbjct: 262 LNVRDNY----LTDLPELPQSL 279

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 30/173 (17%)

Query: 45  NLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLS 103
            L HS +LTE+P       +                       +     L+ C       
Sbjct: 16  PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL------ 69

Query: 104 TSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNS 163
                    +L L+    L S PEL  +++ L     ++ ELP   + L  L++ N  N 
Sbjct: 70  ----DRQAHELELNNL-GLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNN-NL 123

Query: 164 SRLEGLPSK----------------ICKLKSLQHLNLSCCSNLESFPNELRNL 200
             L  LP                  +     L+ +++    +L+  P+   +L
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN-SLKKLPDLPPSL 175

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 43/188 (22%), Positives = 74/188 (39%), Gaps = 27/188 (14%)

Query: 15  PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQ--RY 72
           P +L +  +  N +  L ++ Q L  L           + +  L    NL  LN      
Sbjct: 256 PPSLEALNVRDNYLTDLPELPQSLTFLDVSEN----IFSGLSEL--PPNLYYLNASSNEI 309

Query: 73  TSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNI 132
            SL +   S+  LN  V+ N      L  L        L++LI S   +L   PEL  N+
Sbjct: 310 RSLCDLPPSLEELN--VSNN-----KLIELPALP--PRLERLIASFN-HLAEVPELPQNL 359

Query: 133 KELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLES 192
           K+L ++   + E P   E +  L + +      L  +P      ++L+ L++     L  
Sbjct: 360 KQLHVEYNPLREFPDIPESVEDLRMNS-----HLAEVPELP---QNLKQLHVETN-PLRE 410

Query: 193 FPNELRNL 200
           FP+   ++
Sbjct: 411 FPDIPESV 418

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 8e-10
 Identities = 23/193 (11%), Positives = 52/193 (26%), Gaps = 16/193 (8%)

Query: 18  LVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLE 77
           +         +       ++            ++   +    L  +  + N +      +
Sbjct: 361 VSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420

Query: 78  THSSIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPELFYNIKELS 136
           +  S++        N      +T +S +I  L  L+ +  +                  S
Sbjct: 421 SRISLKDTQIGNLTNR-----ITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANS 474

Query: 137 LDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSC---------C 187
                      S   L  L  + L N   +  LP  +  L  LQ LN++C          
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534

Query: 188 SNLESFPNELRNL 200
           ++     ++    
Sbjct: 535 ADWTRLADDEDTG 547

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 5e-09
 Identities = 34/187 (18%), Positives = 72/187 (38%), Gaps = 22/187 (11%)

Query: 26  NSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHL 85
           N I  + K +QRL  L+ I   +S   T         +  S   ++Y +   + S+++ L
Sbjct: 435 NRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDL 493

Query: 86  NKFVARNLKHCRSLTNLSTSI-HLESLKKLILSG---------CSNLMSFPELF---YNI 132
                  L +C ++T L   +  L  L+ L ++           ++     +       I
Sbjct: 494 TDV---ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 133 KELSLDGTAINELPSS--IEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNL 190
           +   +    + E P+S  ++ + KL +L+  ++ ++  L +       L  L L     +
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLEA-FGTNVKLTDLKLDYN-QI 607

Query: 191 ESFPNEL 197
           E  P + 
Sbjct: 608 EEIPEDF 614

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 4e-07
 Identities = 19/174 (10%), Positives = 51/174 (29%), Gaps = 32/174 (18%)

Query: 37  RLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLK 94
           + +N  ++ L+++  + + P    +  + + ++                  N     ++ 
Sbjct: 671 KGINASTVTLSYN-EIQKFPTELFATGSPISTIILSN--------------NLM--TSIP 713

Query: 95  HCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELF-----YNIKELSLDGTAINELPSSI 149
                       +   L  + L     L S  + F       +  + +     +  P+  
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQP 772

Query: 150 EYLSKLVILNL------GNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNEL 197
              S+L    +        +  L   P+ I    SL  L +    ++     +L
Sbjct: 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 9e-06
 Identities = 27/196 (13%), Positives = 60/196 (30%), Gaps = 22/196 (11%)

Query: 16  KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSL 75
           K+ +     +  +    ++   L +L    +N +  +  I   S   +L+       T+ 
Sbjct: 380 KHRIRMHYKKMFLDYDQRL--NLSDLLQDAINRNPEMKPIKKDSR-ISLKDTQIGNLTNR 436

Query: 76  LET-HSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKE 134
           +     +I+ L K       +       +        +           +    + N+K+
Sbjct: 437 ITFISKAIQRLTKLQIIYFANS----PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD 492

Query: 135 LS----LDGTAINELPSSIEYLSKLVILNLGN---------SSRLEGLPSKICKLKSLQH 181
           L+     +   + +LP  +  L +L  LN+            +    L         +Q 
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 182 LNLSCCSNLESFPNEL 197
             +    NLE FP   
Sbjct: 553 FYMGYN-NLEEFPASA 567

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 36/206 (17%), Positives = 66/206 (32%), Gaps = 21/206 (10%)

Query: 17  NLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLL 76
           N    E  + S K L  + +   +L S+ +   E L  +     A NLE          +
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDI 257

Query: 77  ETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELS 136
                          NL   R L  L  S    +   ++    + +          ++L 
Sbjct: 258 GMPEK--------YMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI----------RKLD 299

Query: 137 LDGTAI--NELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFP 194
           L    +   +  + I+    L +L   N     GL       K L+ L +   ++ +   
Sbjct: 300 LLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGME 359

Query: 195 NELRNLFPCDLYDIEAHWCSSLETLS 220
           +E   +    L  + A  C  LE ++
Sbjct: 360 DEEGLVSQRGLIAL-AQGCQELEYMA 384

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 3e-09
 Identities = 49/298 (16%), Positives = 102/298 (34%), Gaps = 68/298 (22%)

Query: 17  NLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQR-Y-TS 74
           NL +   P   ++ L K++ ++    +   +HS ++ ++   S+   L  L   + Y   
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYENC 246

Query: 75  L--LETHSSIRHLNKFVARNLKHCRSL-----TNLSTSIHLESLKKLILSGCSNLMSFPE 127
           L  L    + +  N F   NL  C+ L       ++  +   +   + L   S  ++  E
Sbjct: 247 LLVLLNVQNAKAWNAF---NLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 128 LFYNIKELSLD--GTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNL- 184
           +    K L L        +LP  +   +   +  +      E +   +    + +H+N  
Sbjct: 303 V----KSLLLKYLDCRPQDLPREVLTTNPRRLSIIA-----ESIRDGLATWDNWKHVNCD 353

Query: 185 -------SCCSNLESFPNELRNL------FPCDLYDIEAH-----WCSS--------LET 218
                  S  + LE  P E R +      FP     I        W           +  
Sbjct: 354 KLTTIIESSLNVLE--PAEYRKMFDRLSVFPPSA-HIPTILLSLIWFDVIKSDVMVVVNK 410

Query: 219 LSGLSIIFTKISRNTQS-----FDFI----NCFKLHQNVVQGIINNAQLKLQLPTSNL 267
           L   S++  +   +T S      +      N + LH++    I+++  +     + +L
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS----IVDHYNIPKTFDSDDL 464

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 6e-08
 Identities = 37/215 (17%), Positives = 67/215 (31%), Gaps = 60/215 (27%)

Query: 6   FKSLSSIIRPKNLVSPEIPRNSIKQLW---------KVVQRLVNLKSINLNHSEHLTEIP 56
           F  LS  + P +     IP   +  +W          VV +L     +     E    IP
Sbjct: 375 FDRLS--VFPPSA---HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 57  SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSI---------- 106
           S+ L   ++  N          H SI  ++ +   N+       +L              
Sbjct: 430 SIYLELKVKLEN------EYALHRSI--VDHY---NIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 107 -HLESLKKLILSGCSNLMSFPELFYNI----KELSLDGTAINELPSSIEYLSKL------ 155
            HL++++         +  F  +F +     +++  D TA N   S +  L +L      
Sbjct: 479 HHLKNIEHP-----ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533

Query: 156 VILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNL 190
           +  N     RL         + ++         NL
Sbjct: 534 ICDNDPKYERL---------VNAILDFLPKIEENL 559

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 19/189 (10%), Positives = 56/189 (29%), Gaps = 13/189 (6%)

Query: 37  RLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHS--SIRHLNKFVARNLK 94
             ++ +        +           +   L      S  +  S      +     +  +
Sbjct: 131 ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQ 190

Query: 95  HCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLS 153
              ++T +S ++  L  L++  +     +       +  +                + L 
Sbjct: 191 LSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ-YKTEDLKWDNLK 249

Query: 154 KLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCC--SNLESFPNELRNLFPCDLYDIEAH 211
            L  + + N   L  LP+ +  L  +Q +N++C    + E   ++ + L    +      
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV------ 303

Query: 212 WCSSLETLS 220
               ++ + 
Sbjct: 304 -GEKIQIIY 311

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 34/192 (17%), Positives = 68/192 (35%), Gaps = 22/192 (11%)

Query: 26  NSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHL 85
           N+I  + K V RL  L+   + +S             N  S   Q+Y +      +++ L
Sbjct: 193 NNITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL 251

Query: 86  NKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAIN- 143
                  + +C +LT L T +  L  ++ + ++     +S  +L  + + L+        
Sbjct: 252 TDV---EVYNCPNLTKLPTFLKALPEMQLINVACN-RGISGEQLKDDWQALADAPVGEKI 307

Query: 144 -------------ELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNL 190
                         + +S++ + KL +L    + +LEG          L  LNL+    +
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAYN-QI 365

Query: 191 ESFPNELRNLFP 202
              P        
Sbjct: 366 TEIPANFCGFTE 377

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 29/189 (15%), Positives = 64/189 (33%), Gaps = 34/189 (17%)

Query: 23  IPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETHS 80
           +   +   L     + +N+ SINL+++  +++ P    S  + L S+N           +
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLM--------GN 467

Query: 81  SIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPELFY-----NIKE 134
            +  + K          SL + + +  +   L  + L     L    + F       +  
Sbjct: 468 MLTEIPK---------NSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVG 517

Query: 135 LSLDGTAINELPSSIEYLSKLVILNLGNSSRLEG------LPSKICKLKSLQHLNLSCCS 188
           + L   + ++ P+     S L    + N    +G       P  I    SL  L +    
Sbjct: 518 IDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN- 576

Query: 189 NLESFPNEL 197
           ++     ++
Sbjct: 577 DIRKVNEKI 585

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 25/186 (13%), Positives = 59/186 (31%), Gaps = 29/186 (15%)

Query: 37  RLVNLKSINLNH---------SEHLTEIPSLSLATNLESLNFQRYTSL--LETHSSIRHL 85
            L  ++ IN+            +    +    +   ++ +    Y +L      +S++ +
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI-GYNNLKTFPVETSLQKM 329

Query: 86  NKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPE----LFYNIKELSLDGT 140
            K       + + L     +      L  L L+    +   P         ++ LS    
Sbjct: 330 KKLGMLECLYNQ-LEGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHN 387

Query: 141 AINELPSSIE--YLSKLVILNLGN-------SSRLEGLPSKICKLKSLQHLNLSCCSNLE 191
            +  +P+  +   +S +  ++              + L     K  ++  +NLS    + 
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QIS 446

Query: 192 SFPNEL 197
            FP EL
Sbjct: 447 KFPKEL 452

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 53.6 bits (128), Expect = 3e-08
 Identities = 46/263 (17%), Positives = 93/263 (35%), Gaps = 20/263 (7%)

Query: 26  NSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHL 85
             IKQ++            NL     +T+  + +   +++ +      S +++   I++L
Sbjct: 9   TPIKQIFPD-DAFAETIKDNLKKKS-VTDAVTQNELNSIDQIIA--NNSDIKSVQGIQYL 64

Query: 86  NKFVARNLKHCRSLTNLSTSIHLESLKKLILSGC--SNLMSFPELFYNIKELSLDGTAIN 143
                  L   + LT++    +L++L  L L      +L S  +L   +K LSL+   I+
Sbjct: 65  PNVTKLFLNGNK-LTDIKPLTNLKNLGWLFLDENKIKDLSSLKDL-KKLKSLSLEHNGIS 122

Query: 144 ELPSSIEYLSKLVILNLGNS--SRLEGLPSKICKLKSLQHLNLSCC--SNLESFPNELRN 199
           ++ + + +L +L  L LGN+  + +  L     +L  L  L+L     S++      L  
Sbjct: 123 DI-NGLVHLPQLESLYLGNNKITDITVL----SRLTKLDTLSLEDNQISDIVPLAG-LTK 176

Query: 200 LFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNVVQGIINNAQLK 259
           L    L         +L  L  L ++  ++         IN              +  L 
Sbjct: 177 LQNLYLSKNHISDLRALAGLKNLDVL--ELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

Query: 260 LQLPTSNLKTQAIIIIVLKYNNS 282
                S+        +       
Sbjct: 235 TPEIISDDGDYEKPNVKWHLPEF 257

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.4 bits (125), Expect = 7e-08
 Identities = 47/198 (23%), Positives = 86/198 (43%), Gaps = 15/198 (7%)

Query: 7   KSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLES 66
               +     ++       + IK + + +Q L N+  + LN +  LT+I  L+   NL  
Sbjct: 34  TDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGW 91

Query: 67  LNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGC--SNLMS 124
           L      + ++  SS++ L K  + +L+H   +++++  +HL  L+ L L     +++  
Sbjct: 92  LFLDE--NKIKDLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDITV 148

Query: 125 FPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNS--SRLEGLPSKICKLKSLQHL 182
              L   +  LSL+   I+++   +  L+KL  L L  +  S L  L      LK+L  L
Sbjct: 149 LSRL-TKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLRAL----AGLKNLDVL 202

Query: 183 NLSCCSNLESFPNELRNL 200
            L     L    N   NL
Sbjct: 203 ELFSQECLNKPINHQSNL 220

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.0 bits (127), Expect = 5e-08
 Identities = 38/167 (22%), Positives = 59/167 (35%), Gaps = 21/167 (12%)

Query: 31  LWKVVQRLVNLKSINLNHSEHLTEIPSLSL-ATNLESLNFQRYTSLLETHSSIRHLNKFV 89
           L ++V R  NLKS+ LN +  L ++ +L   A  LE L    YT+ +            +
Sbjct: 203 LERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-----L 257

Query: 90  ARNLKHCRSLTNLS--TSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAI--NEL 145
           +  L  C+ L  LS         L   + S CS L            L+L    +   +L
Sbjct: 258 SVALSGCKELRCLSGFWDAVPAYLPA-VYSVCSRL----------TTLNLSYATVQSYDL 306

Query: 146 PSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLES 192
              +    KL  L + +     GL       K L+ L +        
Sbjct: 307 VKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVM 353

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 50.3 bits (120), Expect = 4e-07
 Identities = 45/211 (21%), Positives = 74/211 (35%), Gaps = 35/211 (16%)

Query: 31  LWKVVQRLVNLKSINLNHSEHLTEIPSLSLA------TNLESLNFQRYTSLLETHSSIRH 84
           L  +     NLK ++L  S  + ++    L+      T+L SLN     S + + S++  
Sbjct: 148 LAAIAATCRNLKELDLRES-DVDDVSGHWLSHFPDTYTSLVSLNISCLASEV-SFSALER 205

Query: 85  LNKFVARNLKHCRSLT--NLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAI 142
           L       +  C +L    L+ ++ LE L  L L     L    EL        +     
Sbjct: 206 L-------VTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLE---ELGTGGYTAEVRPDVY 254

Query: 143 NELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSN--------LESFP 194
           + L  ++    +L  L+    +    LP+       L  LNLS  +         L   P
Sbjct: 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP 314

Query: 195 NELRNLFPCDLYDIE-----AHWCSSLETLS 220
             L+ L+  D  +       A  C  L  L 
Sbjct: 315 K-LQRLWVLDYIEDAGLEVLASTCKDLRELR 344

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 38/226 (16%), Positives = 63/226 (27%), Gaps = 31/226 (13%)

Query: 8   SLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHS----EHLTEIPSLSLATN 63
                    NLV           +  +      L+ I L       + L  I       N
Sbjct: 74  KGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI--AKSFKN 131

Query: 64  LESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLM 123
            + L          +   +  +          CR+L  L     L       +SG   L 
Sbjct: 132 FKVLVLSSCEGF--STDGLAAI-------AATCRNLKEL----DLRESDVDDVSGHW-LS 177

Query: 124 SFPELFYNIKELSLDGTAINELPSSIEYLSK----LVILNLGNSSRLEGLPSKICKLKSL 179
            FP+ + ++  L++   A     S++E L      L  L L  +  LE L + + +   L
Sbjct: 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQL 237

Query: 180 QHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSII 225
           + L     +                   +    C  L  LSG    
Sbjct: 238 EELGTGGYTA-------EVRPDVYSGLSVALSGCKELRCLSGFWDA 276

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.8 bits (125), Expect = 9e-08
 Identities = 32/183 (17%), Positives = 72/183 (39%), Gaps = 10/183 (5%)

Query: 5   PFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNL 64
           P   +         +   + + S+  +    + L ++  + +     +  I  +   TNL
Sbjct: 11  PINQIFPDADLAEGIRAVLQKASVTDV-VTQEELESITKLVVAGE-KVASIQGIEYLTNL 68

Query: 65  ESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMS 124
           E LN     + +   S + +L K     +   + +T++S   +L +L++L L+   N+  
Sbjct: 69  EYLNLNG--NQITDISPLSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNED-NISD 124

Query: 125 FPEL--FYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHL 182
              L     +  L+L         S +  ++ L  L +   S+++ +   I  L  L  L
Sbjct: 125 ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE-SKVKDVTP-IANLTDLYSL 182

Query: 183 NLS 185
           +L+
Sbjct: 183 SLN 185

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 8e-06
 Identities = 34/181 (18%), Positives = 78/181 (43%), Gaps = 10/181 (5%)

Query: 7   KSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLES 66
             +S++    NL    +  ++I  +   +  L  + S+NL  + +L+++  LS  T L  
Sbjct: 101 TDISALQNLTNLRELYLNEDNISDI-SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNY 159

Query: 67  LNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGC--SNLMS 124
           L      S ++  + I +L    + +L + + + ++S    L SL          +++  
Sbjct: 160 LTVTE--SKVKDVTPIANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDITP 216

Query: 125 FPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNL 184
              +   +  L +    I +L   +  LS+L  L +G  +++  + + +  L  L+ LN+
Sbjct: 217 VANM-TRLNSLKIGNNKITDLS-PLANLSQLTWLEIGT-NQISDINA-VKDLTKLKMLNV 272

Query: 185 S 185
            
Sbjct: 273 G 273

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 28/173 (16%), Positives = 66/173 (38%), Gaps = 11/173 (6%)

Query: 16  KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSL 75
            +L S  +  N I+ +   +  L +L       +  +T+I  ++  T L SL      + 
Sbjct: 177 TDLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVN-QITDITPVANMTRLNSLKIGN--NK 232

Query: 76  LETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGC--SNLMSFPELFYNIK 133
           +   S + +L++     +   + +++++    L  LK L +     S++     L   + 
Sbjct: 233 ITDLSPLANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSNQISDISVLNNL-SQLN 290

Query: 134 ELSLDGTAINEL-PSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLS 185
            L L+   +       I  L+ L  L L  +  +  +   +  L  +   + +
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP-LASLSKMDSADFA 341

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 8e-07
 Identities = 33/200 (16%), Positives = 77/200 (38%), Gaps = 15/200 (7%)

Query: 5   PFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNL 64
           P   + +       +   + + ++         L  + ++  +    +  I  +    NL
Sbjct: 13  PINQIFTDTALAEKMKTVLGKTNVTDT-VSQTDLDQVTTLQADRLG-IKSIDGVEYLNNL 70

Query: 65  ESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMS 124
             +NF    + L   + +++L K V   + + + + +++   +L +L  L L     +  
Sbjct: 71  TQINFSN--NQLTDITPLKNLTKLVDILMNNNQ-IADITPLANLTNLTGLTLFNN-QITD 126

Query: 125 FPELFY--NIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHL 182
              L    N+  L L    I+++ + +  L+ L  L+ GN          +  L +L+ L
Sbjct: 127 IDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVT---DLKPLANLTTLERL 182

Query: 183 NLSCC--SNLESFPNELRNL 200
           ++S    S++      L NL
Sbjct: 183 DISSNKVSDISVLAK-LTNL 201

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 40/186 (21%), Positives = 79/186 (42%), Gaps = 11/186 (5%)

Query: 2   HGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLA 61
                  +S + +  NL S     N I  +   +  L NL  ++LN +  L +I +L+  
Sbjct: 185 SSNKVSDISVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGN-QLKDIGTLASL 242

Query: 62  TNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSN 121
           TNL  L+     + +   + +  L K     L   + ++N+S    L +L  L L+    
Sbjct: 243 TNLTDLDL--ANNQISNLAPLSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNEN-Q 298

Query: 122 LMSFPELFY--NIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSL 179
           L     +    N+  L+L    I+++ S +  L+KL  L    ++++  + S +  L ++
Sbjct: 299 LEDISPISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFF-YNNKVSDVSS-LANLTNI 355

Query: 180 QHLNLS 185
             L+  
Sbjct: 356 NWLSAG 361

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 34/201 (16%), Positives = 79/201 (39%), Gaps = 11/201 (5%)

Query: 2   HGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLA 61
                  ++ +    NL    +  N +K +   +  L NL  ++L ++  ++ +  LS  
Sbjct: 207 TNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN-QISNLAPLSGL 264

Query: 62  TNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSN 121
           T L  L      + +   S +  L       L   + L ++S   +L++L  L L    N
Sbjct: 265 TKLTELKLGA--NQISNISPLAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFN-N 320

Query: 122 LMSFPELFY--NIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSL 179
           +     +     ++ L      ++++ S +  L+ +  L+ G++ ++  L   +  L  +
Sbjct: 321 ISDISPVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHN-QISDLTP-LANLTRI 377

Query: 180 QHLNLSCCSNLESFPNELRNL 200
             L L+  +   +  N   N+
Sbjct: 378 TQLGLNDQAWTNAPVNYKANV 398

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 9e-07
 Identities = 34/199 (17%), Positives = 67/199 (33%), Gaps = 28/199 (14%)

Query: 25  RNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQR-YTSLLETHSSI 82
            N + Q+    +     L+ +NL+ +  L E   L   + L +L+    Y   L    SI
Sbjct: 43  GNPLSQISAADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNYVQELLVGPSI 101

Query: 83  RHL----NKFVARNLKHCRSLTNLS------TSI------HLESLKKLILSGCS----NL 122
             L    N     +    +   N+       T +          ++ L L        N 
Sbjct: 102 ETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 123 MSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHL 182
                    ++ L+L    I ++   +   +KL  L+L + ++L  +  +      +  +
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWI 219

Query: 183 NLSCCSN-LESFPNELRNL 200
           +L   +N L      LR  
Sbjct: 220 SLR--NNKLVLIEKALRFS 236

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 16/164 (9%), Positives = 58/164 (35%), Gaps = 26/164 (15%)

Query: 35  VQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLK 94
           +    ++++++  ++ +++ +         +++           ++ I  L         
Sbjct: 95  LLVGPSIETLHAANN-NISRVSCSRG-QGKKNIYLA--------NNKITMLRDLDEGCRS 144

Query: 95  HCRSLTNLS----TSI-------HLESLKKLILSGCSNLMSFPELFY--NIKELSLDGTA 141
             + L +L      ++         ++L+ L L     +           +K L L    
Sbjct: 145 RVQYL-DLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNK 202

Query: 142 INELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLS 185
           +  +    +  + +  ++L N ++L  +   +   ++L+H +L 
Sbjct: 203 LAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLR 245

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 33/224 (14%), Positives = 74/224 (33%), Gaps = 37/224 (16%)

Query: 9   LSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLA--TNLES 66
           +  ++   ++ +     N+I ++     R    K+I L ++  +T +  L     + ++ 
Sbjct: 92  VQELLVGPSIETLHAANNNISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQY 148

Query: 67  LNFQR-YTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSF 125
           L+ +      +         +     NL++   + ++   +    LK L LS    L   
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSN-KLAFM 206

Query: 126 PELF---YNIKELSLDGTAINELPSSIEYLSKLVILNLGN-------------------- 162
              F     +  +SL    +  +  ++ +   L   +L                      
Sbjct: 207 GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266

Query: 163 -----SSRLEGLPSKICKLKSLQHLNLSCCSNL-ESFPNELRNL 200
                  +L G   + C + +L H    CC +L   F + L  L
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 31/171 (18%), Positives = 59/171 (34%), Gaps = 18/171 (10%)

Query: 36  QRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKH 95
             L N+ S +L     +  +   S     + L      +          L          
Sbjct: 279 NCLTNVSSFSLVSV-TIERVKDFSYNFGWQHLE---LVNCKFGQFPTLKLKSLKRLTFTS 334

Query: 96  CRSLTNLSTSIHLESLKKLILSGCSNLMSFPELF-------YNIKELSLDGTAINELPSS 148
            +   N  + + L SL+ L LS   N +SF            ++K L L    +  + S+
Sbjct: 335 NK-GGNAFSEVDLPSLEFLDLSR--NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391

Query: 149 IEYLSKLVILNLGNSSRLEGLPSKI--CKLKSLQHLNLSCCSNLESFPNEL 197
              L +L  L+  + S L+ +        L++L +L++S   +     N +
Sbjct: 392 FLGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGI 440

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 15/160 (9%)

Query: 38  LVNLKSINLNHSEHLTEIPSLSLA----TNLESLNFQRYTSLLETHSSIRHLNKFVARNL 93
           L +L+ ++L+ +  L+     S +    T+L+ L+   +  ++   S+   L +    + 
Sbjct: 346 LPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLS-FNGVITMSSNFLGLEQLEHLDF 403

Query: 94  KHCR--SLTNLSTSIHLESLKKLILSGCSNLMSFPELFY---NIKELSLDGTAINE--LP 146
           +H     ++  S  + L +L  L +S     ++F  +F    +++ L + G +  E  LP
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 147 SSIEYLSKLVILNLGNSSRLEGLPSKI-CKLKSLQHLNLS 185
                L  L  L+L +  +LE L       L SLQ LN++
Sbjct: 464 DIFTELRNLTFLDL-SQCQLEQLSPTAFNSLSSLQVLNMA 502

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 51/271 (18%), Positives = 97/271 (35%), Gaps = 47/271 (17%)

Query: 4   CPFKSLSSIIR--PKNLVSPEIPRNSIKQLWKVV-QRLVNLKSINLNHSEHLTEIPSLSL 60
           C  K   ++    P      ++ +N IK L +       +L+ + LN +  ++ +   + 
Sbjct: 18  CHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAF 76

Query: 61  A--TNLESLN-------------FQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLS-- 103
               NL +L              F   ++L +   S   +   +    +   +L +L   
Sbjct: 77  NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136

Query: 104 ----TSI------HLESLKKLILSGCSNLMSFP-ELFY---NIKELSLDGTAINELPSSI 149
                 I       L SL++L L  C NL S P E       +  L L    IN +    
Sbjct: 137 DNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195

Query: 150 -EYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNE----LRNLFPCD 204
            + L +L +L + +   L+ +        +L  L+++ C NL + P      L  L   +
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLN 254

Query: 205 LYD-----IEAHWCSSLETLSGLSIIFTKIS 230
           L       IE      L  L  + ++  +++
Sbjct: 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 13/172 (7%)

Query: 36  QRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKH 95
             L N+ +++L     +  +  +      +SL+  R             L    +  L  
Sbjct: 282 HCLANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIR---CQLKQFPTLDLPFLKSLTLTM 337

Query: 96  CRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFY-----NIKELSLDGTAINELPSSIE 150
            +  +     + L SL  L LS  +   S    +      +++ L L       + ++  
Sbjct: 338 NK-GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFM 396

Query: 151 YLSKLVILNLGNSSRLEGLP--SKICKLKSLQHLNLSCCSNLESFPNELRNL 200
            L +L  L+  + S L+ +   S    L+ L +L++S  +    F      L
Sbjct: 397 GLEELQHLDFQH-STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 16/176 (9%)

Query: 38  LVNLKSINLNHSEHLTEIPSLSLATNLESLNFQ--RYTSLLETHSSIRHLNKFVARNLKH 95
             +L+ ++L+ +  +    +      L+ L+FQ      + E  S+   L K +  ++ +
Sbjct: 375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF-SAFLSLEKLLYLDISY 433

Query: 96  CRSLTNLSTSI--HLESLKKLILSGCSNLMSFPELF----YNIKELSLDGTAINELP-SS 148
                     I   L SL  L ++G S   +          N+  L L    + ++    
Sbjct: 434 TN-TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492

Query: 149 IEYLSKLVILNLGNSSRLEGLPSK-ICKLKSLQHLNLSCCSN-LESFPNELRNLFP 202
            + L +L +LN+ ++  L  L S    +L SL  L+ S   N +E+    L++   
Sbjct: 493 FDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCS--FNRIETSKGILQHFPK 545

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 17/178 (9%)

Query: 25  RNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQR-YTSLLETHSSIR 83
            N I  +     + + L  + L  + + + I    L  NL  L+  R      +   ++ 
Sbjct: 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCL-QNLAGLHVHRLILGEFKDERNLE 248

Query: 84  HLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAIN 143
                +   L          T  +  S   +     +N+            +SL G +I 
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV----------SAMSLAGVSIK 298

Query: 144 ELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPN-ELRNL 200
            L   +    K   L++    +L+  P+    L  L+ L L+      SF    L +L
Sbjct: 299 YLE-DVPKHFKWQSLSIIR-CQLKQFPTL--DLPFLKSLTLTMNKGSISFKKVALPSL 352

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 21/174 (12%)

Query: 38  LVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCR 97
           L N+ S +L     +  +   S     + L           +           ++LK   
Sbjct: 281 LTNVSSFSLVSV-TIERVKDFSYNFGWQHLEL--------VNCKFGQFPTLKLKSLKRLT 331

Query: 98  ----SLTNLSTSIHLESLKKLILSGCSNLMS--FPELFY---NIKELSLDGTAINELPSS 148
                  N  + + L SL+ L LS           +  +   ++K L L    +  + S+
Sbjct: 332 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391

Query: 149 IEYLSKLVILNLGNSSRLEGL--PSKICKLKSLQHLNLSCCSNLESFPNELRNL 200
              L +L  L+  + S L+ +   S    L++L +L++S      +F      L
Sbjct: 392 FLGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 38/171 (22%), Positives = 63/171 (36%), Gaps = 9/171 (5%)

Query: 38  LVNLKSINLNHSEHLTEIPSLSLATNLESLNFQ--RYTSLLETHSSIRHLNKFVARNLKH 95
           L +LK +    ++       + L  +LE L+      +       S          +L  
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 96  CRSLTNLSTSIHLESLKKLILSGCS-NLMSFPELFY---NIKELSLDGTAINEL-PSSIE 150
              +T  S  + LE L+ L     +   MS   +F    N+  L +  T           
Sbjct: 383 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442

Query: 151 YLSKLVILNL-GNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNL 200
            LS L +L + GNS +   LP    +L++L  L+LS C   +  P    +L
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 21/260 (8%), Positives = 75/260 (28%), Gaps = 20/260 (7%)

Query: 35  VQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQ--RYTSLLETHSSIRHLNKFVARN 92
           +    ++++++  ++ +++ +         +++     + T L +        ++    +
Sbjct: 95  LLVGPSIETLHAANN-NISRVSCSRG-QGKKNIYLANNKITMLRD--LDEGCRSRVQYLD 150

Query: 93  LKHCR--SLTNLSTSIHLESLKKLILSGCSNLMSFPELFY--NIKELSLDGTAINELPSS 148
           LK     ++     +   ++L+ L L     +           +K L L    +  +   
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKLAFMGPE 209

Query: 149 IEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLS-------CCSNLESFPNELRNLF 201
            +  + +  ++L N ++L  +   +   ++L+H +L           +  S    ++ + 
Sbjct: 210 FQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

Query: 202 PCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNVVQGIINNAQLKLQ 261
              +  +           +               F       L +     +        +
Sbjct: 269 KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF-ADRLIALKRKEHALLSGQGSETER 327

Query: 262 LPTSNLKTQAIIIIVLKYNN 281
           L            I      
Sbjct: 328 LECERENQARQREIDALKEQ 347

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 27/187 (14%)

Query: 36  QRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQR-YTSLLETHSSIRHL----NKFVA 90
                L+ +NL+ +  L E   L   + L +L+    Y   L    SI  L    N    
Sbjct: 55  APFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR 113

Query: 91  RNLKHCRSLTNLS------TSI------HLESLKKLILSGCS----NLMSFPELFYNIKE 134
            +    +   N+       T +          ++ L L        N          ++ 
Sbjct: 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 135 LSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSN-LESF 193
           L+L    I ++   +   +KL  L+L + ++L  +  +      +  ++L   +N L   
Sbjct: 174 LNLQYNFIYDVKGQV-VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLR--NNKLVLI 229

Query: 194 PNELRNL 200
              LR  
Sbjct: 230 EKALRFS 236

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 26/157 (16%), Positives = 62/157 (39%), Gaps = 24/157 (15%)

Query: 38  LVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCR 97
           + +L   N+++      + +L++   +E L+          H+SI  +   V   L   +
Sbjct: 185 IPSLFHANVSY----NLLSTLAIPIAVEELDAS--------HNSINVVRGPVNVELTILK 232

Query: 98  ----SLTNLSTSIHLESLKKLILSGCSNLMSF--PELFY---NIKELSLDGTAINELPSS 148
               +LT+ +  ++   L ++ LS   N +       F     ++ L +    +  L   
Sbjct: 233 LQHNNLTDTAWLLNYPGLVEVDLSY--NELEKIMYHPFVKMQRLERLYISNNRLVALNLY 290

Query: 149 IEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLS 185
            + +  L +L+L + + L  +     +   L++L L 
Sbjct: 291 GQPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLD 326

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.6 bits (108), Expect = 9e-06
 Identities = 49/257 (19%), Positives = 95/257 (36%), Gaps = 21/257 (8%)

Query: 16  KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTE--IPSLSLATNLESLNFQRYT 73
           + +++   PR+ + Q          ++ ++L++S          LS  + L++L+ +   
Sbjct: 70  QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 129

Query: 74  SLLETHSSIRHLNKFVARNLKHCRSLTNLSTSI---HLESLKKLILSGCSNL------MS 124
                 +++   +  V  NL  C   +  +          L +L LS C +       ++
Sbjct: 130 LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189

Query: 125 FPELFYNIKELSLDG--TAINE--LPSSIEYLSKLVILNLGNSSRL--EGLPSKICKLKS 178
              +   I +L+L G    + +  L + +     LV L+L +S  L  +    +  +L  
Sbjct: 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNY 248

Query: 179 LQHLNLSCCSNLESFPNELRNLFPC-DLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFD 237
           LQHL+LS C ++   P  L  L     L  ++        TL  L      +  N   F 
Sbjct: 249 LQHLSLSRCYDII--PETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFT 306

Query: 238 FINCFKLHQNVVQGIIN 254
            I    +     Q I  
Sbjct: 307 TIARPTIGNKKNQEIWG 323

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 37/178 (20%), Positives = 63/178 (35%), Gaps = 18/178 (10%)

Query: 25  RNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRH 84
            N I  +          +S+N   +++L  I      + ++SL    +  + +   S   
Sbjct: 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 85  LNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINE 144
                  +++      NL    +  ++        S L          +EL L  T ++E
Sbjct: 248 FEGLCEMSVESI----NLQ-KHYFFNISSNTFHCFSGL----------QELDLTATHLSE 292

Query: 145 LPSSIEYLSKLVILNLGNSSRLEGLPSKICK-LKSLQHLNLS-CCSNLESFPNELRNL 200
           LPS +  LS L  L L   ++ E L         SL HL++      LE     L NL
Sbjct: 293 LPSGLVGLSTLKKLVLSA-NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 43/208 (20%), Positives = 72/208 (34%), Gaps = 24/208 (11%)

Query: 25  RNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLA--TNLESLNFQR-YTSLLETHSS 81
              + +L   +  L  LK + L+ +     +  +S +   +L  L+ +     L      
Sbjct: 287 ATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

Query: 82  IRHLNKFVARNLKHCR---SLTNLSTSIHLESLKKLILSGCSNLMSFPELFY---NIKEL 135
           + +L      +L H     S        +L  L+ L LS    L    E F     ++ L
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405

Query: 136 SLDGTAINEL--PSSIEYLSKLVILNLGNSSRLEGLPSKICK-LKSLQHLNLSCCSNLES 192
            L  T +      S  + L  L +LNL +S  L+    ++   L +LQHLNL    +   
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGN-HFPK 463

Query: 193 FPNELRNLFPCDLYDIEAHWCSSLETLS 220
              +  N                LE L 
Sbjct: 464 GNIQKTNSL---------QTLGRLEILV 482

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 40/216 (18%), Positives = 66/216 (30%), Gaps = 30/216 (13%)

Query: 25  RNSIKQLWK--VVQRLVNLKSINLNHSEHLTEIPSLSLA--TNLESLNFQRYTSLLETHS 80
              +K        Q L  LK +NL+HS  L             L+ LN Q         +
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQ--------GN 459

Query: 81  SIRHLNKFVARNLKHCRSLTNLS-TSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDG 139
                N     +L+    L  L  +   L S+ +   +    +            + L  
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM----------NHVDLSH 509

Query: 140 TAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLS-----CCSNLESFP 194
             +           K + LNL ++     LPS +  L   + +NL      C  +   F 
Sbjct: 510 NRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFL 569

Query: 195 NELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKIS 230
              +      L D E   C +   L G+ +    +S
Sbjct: 570 EWYKENMQ-KLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 40/211 (18%), Positives = 73/211 (34%), Gaps = 37/211 (17%)

Query: 25  RNSIKQLWKVV-QRLVNLKSINLNHSEHLTEIPSLSLA--TNLESLNFQRYTSLLETHSS 81
            N I+ +      R+ +L  ++L   + L  I   +     NL+ LN            +
Sbjct: 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG--------MCN 207

Query: 82  IRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPELFYNIKELSLDGT 140
           I+ +             L  L  S  H   ++     G S+L          K+L +  +
Sbjct: 208 IKDMPNL-----TPLVGLEELEMSGNHFPEIRPGSFHGLSSL----------KKLWVMNS 252

Query: 141 AINELPS-SIEYLSKLVILNLGNSSRLEGLPSKICK-LKSLQHLNLS-----CCSNLESF 193
            ++ +   + + L+ LV LNL   + L  LP  +   L+ L  L+L      C  ++   
Sbjct: 253 QVSLIERNAFDGLASLVELNL-AHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWL 311

Query: 194 PNELRNLFPCDLYDIEAHWCSSLETLSGLSI 224
              LR   P          C +   + G  +
Sbjct: 312 AWWLREYIP--TNSTCCGRCHAPMHMRGRYL 340

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 30/190 (15%)

Query: 36  QRLVNLKSINLNHSEHLTEIPSLSLA--TNLESLNFQRYTSLLETHSSIRHLNKFVARNL 93
             L  L+   L ++ ++  + S SL    N+  LN +R  S  +   S+  L K    + 
Sbjct: 269 AWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKR--SFTKQSISLASLPKIDDFSF 325

Query: 94  KHCRSLTNL------------STSIHLESLKKLILSGCSNLMSFPEL---------FYNI 132
           +  + L +L            +    L +LK L LS   +  S   L            +
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN--SFTSLRTLTNETFVSLAHSPL 383

Query: 133 KELSLDGTAINEL-PSSIEYLSKLVILNL-GNSSRLEGLPSKICKLKSLQHLNLSCCSNL 190
             L+L    I+++   +  +L  L +L+L  N    E    +   L+++  + LS    L
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 191 ESFPNELRNL 200
           +   N    +
Sbjct: 444 QLTRNSFALV 453

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 46/254 (18%), Positives = 83/254 (32%), Gaps = 47/254 (18%)

Query: 7   KSLSSIIRPKNLVSPEIPRNSIKQLWKVV-QRLVNLKSINLNHSEHLTEIPSLSLA--TN 63
            ++  +   ++     I   S+ ++     Q L  L+ +N+  +  +  I S       N
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLIN 354

Query: 64  LESLNFQRYTSLLET----------HSSIRHLN-------KFVARNLKHCRSLTNL---- 102
           L+ L+     + L T          HS +  LN       K  +        L  L    
Sbjct: 355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414

Query: 103 ---------STSIHLESLKKLILSGCSNLMSFPELFY---NIKELSLDG---TAINELPS 147
                         LE++ ++ LS    L      F    +++ L L       ++  PS
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474

Query: 148 SIEYLSKLVILNLGNSSRLEGLPSK-ICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLY 206
             + L  L IL+L N + +  +    +  L+ L+ L+L    NL           P    
Sbjct: 475 PFQPLRNLTILDLSN-NNIANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFL 532

Query: 207 DIEAHWCSSLETLS 220
                  S L  L+
Sbjct: 533 KG----LSHLHILN 542

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 36/199 (18%), Positives = 74/199 (37%), Gaps = 36/199 (18%)

Query: 36  QRLVNLKSINLNHSEHLTEIPSLSLA--TNLESLNFQRYTSLLETHSSIRHLNKFVARNL 93
            R+ +L+ ++L   + L+ I   +    +NL  LN            ++R +        
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA--------MCNLREIPNL----- 203

Query: 94  KHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPS-SIEY 151
                L  L  S  HL +++     G  +L          ++L +  + I  +   + + 
Sbjct: 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHL----------QKLWMIQSQIQVIERNAFDN 253

Query: 152 LSKLVILNLGNSSRLEGLPSKICK-LKSLQHLNLS-----CCSNLESFPNELRNLFPCDL 205
           L  LV +NL   + L  LP  +   L  L+ ++L      C  ++      ++++ P + 
Sbjct: 254 LQSLVEINL-AHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNT 312

Query: 206 YDIEAHWCSSLETLSGLSI 224
                  C++   L G  I
Sbjct: 313 ACCAR--CNTPPNLKGRYI 329

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 44/211 (20%), Positives = 71/211 (33%), Gaps = 45/211 (21%)

Query: 48  HSEHLTEIPS--------LSLATN----LESLNFQRYTSLLETHSSIRHLNKFVARNLKH 95
             ++L E+P         L+L  N    ++  +F+    L                 L  
Sbjct: 51  VRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQ-------------LSR 97

Query: 96  CRSLTNLSTSI--HLESLKKLILSGCSNLMSF--PELFY---NIKELSLDGTAINELPSS 148
              +  +       L +L  L L    N ++      F     +KEL L    I  +PS 
Sbjct: 98  NH-IRTIEIGAFNGLANLNTLELF--DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY 154

Query: 149 I-EYLSKLVILNLGNSSRLEGLPSKI-CKLKSLQHLNLSCC--SNLESFPNELRNLFPCD 204
               +  L  L+LG   RL  +       L +L++LNL+ C    + +    L  L   D
Sbjct: 155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTP-LIKLDELD 213

Query: 205 LYD-----IEAHWCSSLETLSGLSIIFTKIS 230
           L       I       L  L  L +I ++I 
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.0 bits (103), Expect = 4e-05
 Identities = 30/176 (17%), Positives = 58/176 (32%), Gaps = 6/176 (3%)

Query: 12  IIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQR 71
               + L   E+       L   ++    L+ +   +   L  I  L  A +      + 
Sbjct: 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET 404

Query: 72  YTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPEL--F 129
                 T  ++  +      +L+    L N    +    ++ L L+   +L     L   
Sbjct: 405 LQ-YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCHLEQL 462

Query: 130 YNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLS 185
             +  L L    +  LP ++  L  L +L   + + LE +   +  L  LQ L L 
Sbjct: 463 LLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVDG-VANLPRLQELLLC 516

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 5e-05
 Identities = 25/156 (16%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 38  LVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCR 97
           + +L   N+++      + +L++   +E L+          H+SI  +   V   L   +
Sbjct: 191 IPSLFHANVSY----NLLSTLAIPIAVEELDAS--------HNSINVVRGPVNVELTILK 238

Query: 98  ----SLTNLSTSIHLESLKKLILSGCSNLMSFPEL----FYNIKELSLDGTAINELPSSI 149
               +LT+ +  ++   L ++ LS    L             ++ L +    +  L    
Sbjct: 239 LQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYG 297

Query: 150 EYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLS 185
           + +  L +L+L + + L  +     +   L++L L 
Sbjct: 298 QPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLD 332

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 36/208 (17%), Positives = 80/208 (38%), Gaps = 16/208 (7%)

Query: 4   CPFKSLSSIIR--PKNLVSPEIPRNSIKQLWKVV-QRLVNLKSINLNHSEHLTEIPSLSL 60
           C    ++ I    P+N +        ++ + K       +L+ I ++ ++ L  I +   
Sbjct: 16  CQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 75

Query: 61  A--TNLESLNFQRYTSLLETHSSI-RHLNKFVARNLKHCRSLTNLS--TSIHLESLKKLI 115
           +    L  +  ++  +LL  +    ++L       + +   + +L     IH      L 
Sbjct: 76  SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLD 134

Query: 116 LSGCSNLMSFPE-----LFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLP 170
           +    N+ +        L +    L L+   I E+ +S    ++L  LNL +++ LE LP
Sbjct: 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP 194

Query: 171 SKICK-LKSLQHLNLSCCSNLESFPNEL 197
           + +         L++S    + S P+  
Sbjct: 195 NDVFHGASGPVILDISRT-RIHSLPSYG 221

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 45/237 (18%), Positives = 82/237 (34%), Gaps = 40/237 (16%)

Query: 38  LVNLKSINLNHSEHLTEIPS-----------LSLATN----LESLNFQRYTSL----LET 78
           L  L  I +  + +L  I             L ++      L  ++           ++ 
Sbjct: 78  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137

Query: 79  HSSIRHLNKFVARNLKHCRSLTNLS----TSIH-----LESLKKLILSGCSNLMSFPE-L 128
           + +I  + +     L     +  L+      IH        L +L LS  +NL   P  +
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197

Query: 129 FY---NIKELSLDGTAINELPSSI-EYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNL 184
           F+       L +  T I+ LPS   E L KL   +  N   L+ LP+ + KL +L   +L
Sbjct: 198 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN---LKKLPT-LEKLVALMEASL 253

Query: 185 SC---CSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDF 238
           +    C    ++  ++  L P     I       +    G      + + ++ S  F
Sbjct: 254 TYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGF 310

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 39/186 (20%), Positives = 72/186 (38%), Gaps = 33/186 (17%)

Query: 23  IPRNSIKQLWKVV-QRLVNLKSINLNHSEHLTEIPSLSLA--TNLESLNFQRYTSLLETH 79
           IP+  +      V   L  +K I + +S  +  +P        +LE L+           
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSE-------- 343

Query: 80  SSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGC--SNLMSFPELFY---NIKE 134
                 N  V   LK+              SL+ L+LS     ++    E+     N+  
Sbjct: 344 ------NLMVEEYLKNSACKGAWP------SLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391

Query: 135 LSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFP 194
           L +     + +P S ++  K+  LNL + + +  + +  C  ++L+ L++S   NL+SF 
Sbjct: 392 LDISRNTFHPMPDSCQWPEKMRFLNLSS-TGIRVVKT--CIPQTLEVLDVSNN-NLDSFS 447

Query: 195 NELRNL 200
             L  L
Sbjct: 448 LFLPRL 453

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 27/161 (16%), Positives = 59/161 (36%), Gaps = 21/161 (13%)

Query: 36  QRLVNLKSINLNH----SEHLTEIPSLSLATNLESLNFQ--RYTSLLETHSSIRHLNKFV 89
           Q L +L+ ++L+      E+L          +L++L        S+ +T   +  L    
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL---- 386

Query: 90  ARNLKHCR----SLTNLSTSIH-LESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINE 144
            +NL        +   +  S    E ++ L LS     +    +   ++ L +    ++ 
Sbjct: 387 -KNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS 445

Query: 145 LPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLS 185
                  L +L  L + + ++L+ LP        L  + +S
Sbjct: 446 FSLF---LPRLQELYI-SRNKLKTLPD-ASLFPVLLVMKIS 481

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 34/175 (19%), Positives = 70/175 (40%), Gaps = 17/175 (9%)

Query: 16  KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSL 75
              +   + + S+         L ++  I  N+S+ +  +  +    N+  L      + 
Sbjct: 24  AETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFL--NGNK 79

Query: 76  LETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGC-----SNLMSFPELFY 130
           L     + +L       L   + + +LS+   L+ LK L L        + L+  P+L  
Sbjct: 80  LTDIKPLANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL-- 136

Query: 131 NIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLS 185
             + L L    I ++ + +  L+KL  L+L   +++  +   +  L  LQ+L LS
Sbjct: 137 --ESLYLGNNKITDI-TVLSRLTKLDTLSL-EDNQISDIVP-LAGLTKLQNLYLS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 34/150 (22%), Positives = 72/150 (48%), Gaps = 10/150 (6%)

Query: 38  LVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCR 97
           L N   I    S  +T+  + +    + +L+   + + + T   +++LN  +   LK  +
Sbjct: 18  LANAIKIAAGKSN-VTDTVTQADLDGITTLSA--FGTGVTTIEGVQYLNNLIGLELKDNQ 74

Query: 98  SLTNLSTSIHLESLKKLILSGCSNLMSFPELFY--NIKELSLDGTAINELPSSIEYLSKL 155
            +T+L+   +L  + +L LSG   L +   +    +IK L L  T I ++ + +  LS L
Sbjct: 75  -ITDLAPLKNLTKITELELSGN-PLKNVSAIAGLQSIKTLDLTSTQITDV-TPLAGLSNL 131

Query: 156 VILNLGNSSRLEGLPSKICKLKSLQHLNLS 185
            +L L   +++  +   +  L +LQ+L++ 
Sbjct: 132 QVLYLDL-NQITNISP-LAGLTNLQYLSIG 159

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 34/180 (18%), Positives = 76/180 (42%), Gaps = 11/180 (6%)

Query: 8   SLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESL 67
              +      + +       +  + + VQ L NL  + L  +  +T++  L   T +  L
Sbjct: 33  DTVTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDN-QITDLAPLKNLTKITEL 90

Query: 68  NFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGC--SNLMSF 125
                 + L+  S+I  L      +L   + +T+++    L +L+ L L     +N+   
Sbjct: 91  ELSG--NPLKNVSAIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNISPL 147

Query: 126 PELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLS 185
             L  N++ LS+    +++L + +  LSKL  L   + +++  +   +  L +L  ++L 
Sbjct: 148 AGL-TNLQYLSIGNAQVSDL-TPLANLSKLTTLKADD-NKISDISP-LASLPNLIEVHLK 203

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 24/156 (15%), Positives = 49/156 (31%), Gaps = 23/156 (14%)

Query: 36  QRLVNLKSINLNHSEHLTEIPSLSLA--TNLESLNFQRYTSLLETHSSIRHLNKFVARNL 93
             L  L+ + ++ S  L      SL    N+  L                 L +      
Sbjct: 171 AGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILH--------MKQHILLLEIFVDVT 221

Query: 94  KHCRSLT---NLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIE 150
                L        + H   L     +      +F       + + +   ++ ++   + 
Sbjct: 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF-------RNVKITDESLFQVMKLLN 274

Query: 151 YLSKLVILNLGNSSRLEGLPSKICK-LKSLQHLNLS 185
            +S L+ L   + ++L+ +P  I   L SLQ + L 
Sbjct: 275 QISGLLELEF-SRNQLKSVPDGIFDRLTSLQKIWLH 309

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 40/193 (20%), Positives = 74/193 (38%), Gaps = 17/193 (8%)

Query: 4   CPFKSLSSI---IRPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIPSLS 59
           C  ++L+++   + PK+     +  N +       +     L  +NL+ +  LT++    
Sbjct: 17  CDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDG 74

Query: 60  LATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILS 117
               L +L+   +  L       + L      ++   R LT+L       L  L++L L 
Sbjct: 75  TLPVLGTLDLS-HNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLK 132

Query: 118 GCSNLMSFPE-LFY---NIKELSLDGTAINELPSSI-EYLSKLVILNLGNSSRLEGLPSK 172
           G + L + P  L      +++LSL    + ELP+ +   L  L  L L   + L  +P  
Sbjct: 133 G-NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL-QENSLYTIPKG 190

Query: 173 ICKLKSLQHLNLS 185
                 L    L 
Sbjct: 191 FFGSHLLPFAFLH 203

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 32/177 (18%), Positives = 68/177 (38%), Gaps = 18/177 (10%)

Query: 37  RLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQ--RYTSLLETHSSIRHLNKFVARNLK 94
            L  L+S+ L++S     +     + +L SL+      +  + T +S+   +     N+ 
Sbjct: 75  SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 134

Query: 95  HCR--SLTNLSTSIHLESLKKLILSGCSNLMSFPELFY------NIKELSLDGTAINELP 146
                    +S  + L SL+ L LS  S   +    +        +K L++ G   N++ 
Sbjct: 135 SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG---NKIS 191

Query: 147 SSIEY--LSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLE-SFPNELRNL 200
             ++      L  L++ +++        +    +LQHL++S    L   F   +   
Sbjct: 192 GDVDVSRCVNLEFLDVSSNN-FSTGIPFLGDCSALQHLDISGN-KLSGDFSRAISTC 246

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 26/150 (17%), Positives = 55/150 (36%), Gaps = 6/150 (4%)

Query: 16  KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSL 75
            +L    +   ++  L   ++   N+K + +N+  H T    +S  +NLE L        
Sbjct: 44  NSLTYITLANINVTDL-TGIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVT 101

Query: 76  LETHSSIRHLNKFVARNLKHCR-SLTNLSTSIHLESLKKLILSGCSNLMSFPELFY--NI 132
            +   ++  L      ++ H     + L+    L  +  + LS    +     L     +
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPEL 161

Query: 133 KELSLDGTAINELPSSIEYLSKLVILNLGN 162
           K L++    +++    IE   KL  L   +
Sbjct: 162 KSLNIQFDGVHDY-RGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 29/176 (16%), Positives = 62/176 (35%), Gaps = 43/176 (24%)

Query: 38  LVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCR 97
           + +L  I L +   +T++  +  A N++ L           +    + N      +    
Sbjct: 43  MNSLTYITLANIN-VTDLTGIEYAHNIKDLTI--------NNIHATNYN-----PISGLS 88

Query: 98  SLTNLS------TSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAI-NELPSSIE 150
           +L  L       TS  + +L  L                ++  L +  +A  + + + I 
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLT---------------SLTLLDISHSAHDDSILTKIN 133

Query: 151 YLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCC-----SNLESFPNELRNLF 201
            L K+  ++L  +  +  +   +  L  L+ LN+          +E FP  L  L+
Sbjct: 134 TLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIEDFPK-LNQLY 187

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 4/121 (3%)

Query: 104 TSIHLESLKKLILSGCS-NLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGN 162
           T   + SL  + L+  +   ++  E  +NIK+L+++        + I  LS L  L +  
Sbjct: 39  TEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMG 97

Query: 163 SSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGL 222
                     +  L SL  L++S  ++ +S   ++  L    +  I+  +  ++  +  L
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL--PKVNSIDLSYNGAITDIMPL 155

Query: 223 S 223
            
Sbjct: 156 K 156

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 33/163 (20%), Positives = 71/163 (43%), Gaps = 24/163 (14%)

Query: 48  HSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSL---TNLST 104
               L ++P   L  +   L+ Q        ++ I  +     +NLK+  +L    N  +
Sbjct: 39  SDLGLEKVPK-DLPPDTALLDLQ--------NNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 105 SIH------LESLKKLILSGCSNLMSFP-ELFYNIKELSLDGTAINELPSSI-EYLSKLV 156
            I       L  L++L LS  + L   P ++   ++EL +    I ++  S+   L++++
Sbjct: 90  KISPGAFAPLVKLERLYLSK-NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 148

Query: 157 ILNLG-NSSRLEGLPSKI-CKLKSLQHLNLSCCSNLESFPNEL 197
           ++ LG N  +  G+ +     +K L ++ ++   N+ + P  L
Sbjct: 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGL 190

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 27/212 (12%), Positives = 67/212 (31%), Gaps = 16/212 (7%)

Query: 4   CPFKSLSSI-IRPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIPSLSLA 61
              K +  I   P +  + ++    ++ +       L N+  I ++    L ++ S S  
Sbjct: 18  VTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY 77

Query: 62  --TNLESLNFQRYTSLLETHSSI-RHLNKFVARNLKHCR--SLTNLSTSIHLESLKKLIL 116
             + +  +  +   +L        + L       + +       +L+     +    L +
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137

Query: 117 SGCSNLMSFPE-----LFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPS 171
           +    + S P      L      L L       +       +KL  + L  +  L  +  
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197

Query: 172 KICK--LKSLQHLNLSCCSNLESFPNE-LRNL 200
                       L++S   ++ + P++ L +L
Sbjct: 198 DAFGGVYSGPSLLDVSQT-SVTALPSKGLEHL 228

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	295
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.91
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.9
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.9
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.9
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.9
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.9
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.89
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.89
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.88
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.88
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.88
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.88
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.87
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.87
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.87
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.87
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.87
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.86
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.86
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.86
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.85
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.85
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.84
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.84
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.84
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.84
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.84
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.83
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.83
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.83
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.83
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.81
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.81
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.81
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.8
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.8
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.8
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.8
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.8
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.79
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.79
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.78
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.78
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.76
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.71
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.71
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.69
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.68
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.68
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.67
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.63
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.61
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.6
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.6
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.58
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.58
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.57
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.55
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.54
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.54
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.54
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.52
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.52
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.5
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.48
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.46
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.42
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.41
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.41
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.4
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.39
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.38
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.38
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.37
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.31
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.3
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.3
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.27
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.17
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.16
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.16
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.05
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.94
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.9
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.88
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.87
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.8
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.79
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.76
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.59
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.57
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.51
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.5
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.07
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.0
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.97
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.85
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.83
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.71
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.69
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.68
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.18
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.91
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.7
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.59
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.52
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.91

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=2e-27  Score=206.72  Aligned_cols=217  Identities=24%  Similarity=0.347  Sum_probs=196.7

Q ss_pred             CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEcc
Q 039126           15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNL   93 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   93 (295)
                      .++++.|++++|.+..+|..+..+++|++|++++|.+. .+| .+..+++|++|++++|. +..+|..+..+++|++|++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence            48899999999999999999999999999999999977 777 58999999999999964 5588989999999999999


Q ss_pred             ccCcCCceeCCccc----------CccccEEeccCCCCCcccCcCC---CCCceEEccCccccccchhhhCCCCCcEEec
Q 039126           94 KHCRSLTNLSTSIH----------LESLKKLILSGCSNLMSFPELF---YNIKELSLDGTAINELPSSIEYLSKLVILNL  160 (295)
Q Consensus        94 ~~~~~l~~l~~~~~----------~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l  160 (295)
                      ++|...+.+|..+.          +++|+.|++++|.+. .+|..+   .+|++|++++|.++.+|..++.+++|+.|++
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L  236 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL  236 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence            99988888887653          899999999998754 777654   4788999999999999999999999999999


Q ss_pred             CCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecC
Q 039126          161 GNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFIN  240 (295)
Q Consensus       161 ~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~  240 (295)
                      ++|...+.+|..++++++|++|++++|...+.+|..+..+  ++|++|++++|+.++.+|..+    ..+++|+.+.+..
T Consensus       237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l--~~L~~L~L~~n~~~~~iP~~l----~~L~~L~~l~l~~  310 (328)
T 4fcg_A          237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL--TQLEKLDLRGCVNLSRLPSLI----AQLPANCIILVPP  310 (328)
T ss_dssp             TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC--TTCCEEECTTCTTCCCCCGGG----GGSCTTCEEECCG
T ss_pred             cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC--CCCCEEeCCCCCchhhccHHH----hhccCceEEeCCH
Confidence            9998889999999999999999999999999999999998  999999999999999998765    6889999998864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=1.9e-25  Score=192.93  Aligned_cols=219  Identities=12%  Similarity=0.106  Sum_probs=154.0

Q ss_pred             CCceeEecCCCCcc---ccchhhcCCCCCcEEecCC-CCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcE
Q 039126           16 KNLVSPEIPRNSIK---QLWKVVQRLVNLKSINLNH-SEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVA   90 (295)
Q Consensus        16 ~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~L~~-~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   90 (295)
                      .+++.|++++|.+.   .+|..++++++|++|++++ |.+.+.+| .+..+++|++|++++|.....+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            57888888888777   4677788888888888884 77766777 5778888888888886655577777788888888


Q ss_pred             EccccCcCCceeCCcc-cCccccEEeccCCCCCcccCcCCC----CCceEEccCcccc-ccchhhhCCCCCcEEecCCCc
Q 039126           91 RNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPELFY----NIKELSLDGTAIN-ELPSSIEYLSKLVILNLGNSS  164 (295)
Q Consensus        91 L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~----~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~~~  164 (295)
                      |++++|.....+|..+ .+++|++|++++|.+.+.+|..+.    +|++|++++|.++ .+|..++.++ |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            8888765444555554 377888888888776666665443    5677788888777 6666676665 7777777775


Q ss_pred             CCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126          165 RLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF  242 (295)
Q Consensus       165 ~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~  242 (295)
                      .....|..+.++++|+.|++++|.+.+..+. +..+  ++|++|+++++.....++..+    ..+++|++|+++++.
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l--~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS--KNLNGLDLRNNRIYGTLPQGL----TQLKFLHSLNVSFNN  279 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCC--TTCCEEECCSSCCEECCCGGG----GGCTTCCEEECCSSE
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-cccc--CCCCEEECcCCcccCcCChHH----hcCcCCCEEECcCCc
Confidence            5556666777777777777777766555444 4444  777777777765332444433    467777777777763

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.92  E-value=2e-24  Score=207.82  Aligned_cols=230  Identities=20%  Similarity=0.171  Sum_probs=174.3

Q ss_pred             CCCCC-CCCCceeEecCCCCcc-ccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcc
Q 039126            9 LSSII-RPKNLVSPEIPRNSIK-QLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHL   85 (295)
Q Consensus         9 ~p~~~-~~~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l   85 (295)
                      +|..+ .+++|++|++++|.+. .+|..++.+++|++|++++|.+.+.+| .+..+++|++|++++|...+.+|..+..+
T Consensus       410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  489 (768)
T 3rgz_A          410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC  489 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence            44433 4777777777777776 456777777788888888877777777 47777888888888876666777777888


Q ss_pred             cCCcEEccccCcCCceeCCccc-CccccEEeccCCCCCcccCcCCC---CCceEEccCcccc-ccchhh-----------
Q 039126           86 NKFVARNLKHCRSLTNLSTSIH-LESLKKLILSGCSNLMSFPELFY---NIKELSLDGTAIN-ELPSSI-----------  149 (295)
Q Consensus        86 ~~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~i~-~~~~~~-----------  149 (295)
                      ++|++|++++|.....+|..+. +++|+.|++++|.+.+.+|..++   +|++|++++|.++ .+|..+           
T Consensus       490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~  569 (768)
T 3rgz_A          490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF  569 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred             CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence            8888888888765556666553 77888888888877777776544   5678888887765 444332           


Q ss_pred             -----------------------------------------------------------hCCCCCcEEecCCCcCCcCcc
Q 039126          150 -----------------------------------------------------------EYLSKLVILNLGNSSRLEGLP  170 (295)
Q Consensus       150 -----------------------------------------------------------~~~~~L~~L~l~~~~~~~~~p  170 (295)
                                                                                 +.+++|+.|++++|...+.+|
T Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip  649 (768)
T 3rgz_A          570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP  649 (768)
T ss_dssp             TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred             cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence                                                                       234678888999887777888


Q ss_pred             cccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCC
Q 039126          171 SKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKL  244 (295)
Q Consensus       171 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l  244 (295)
                      .++++++.|+.|++++|.+.+.+|..++.+  ++|++|+++++..-..+|..+    ..+++|++|+++++.--
T Consensus       650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L--~~L~~LdLs~N~l~g~ip~~l----~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          650 KEIGSMPYLFILNLGHNDISGSIPDEVGDL--RGLNILDLSSNKLDGRIPQAM----SALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCCSCCCGGGGGC--TTCCEEECCSSCCEECCCGGG----GGCCCCSEEECCSSEEE
T ss_pred             HHHhccccCCEEeCcCCccCCCCChHHhCC--CCCCEEECCCCcccCcCChHH----hCCCCCCEEECcCCccc
Confidence            889999999999999999989999999998  999999999876555666644    67889999999998543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.92  E-value=7.7e-25  Score=189.17  Aligned_cols=231  Identities=17%  Similarity=0.132  Sum_probs=196.4

Q ss_pred             cCCCCC-CCCCceeEecCC-CCcc-ccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchh
Q 039126            8 SLSSII-RPKNLVSPEIPR-NSIK-QLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIR   83 (295)
Q Consensus         8 ~~p~~~-~~~~L~~L~l~~-~~~~-~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~   83 (295)
                      .+|..+ .+++|++|++++ |.+. .+|..++.+++|++|++++|.+.+.+| .+..+++|++|++++|.....+|..+.
T Consensus        67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  146 (313)
T 1ogq_A           67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence            466555 599999999995 8887 678899999999999999999888888 599999999999999877668898999


Q ss_pred             cccCCcEEccccCcCCceeCCccc-Cc-cccEEeccCCCCCcccCcCCC--CCceEEccCcccc-ccchhhhCCCCCcEE
Q 039126           84 HLNKFVARNLKHCRSLTNLSTSIH-LE-SLKKLILSGCSNLMSFPELFY--NIKELSLDGTAIN-ELPSSIEYLSKLVIL  158 (295)
Q Consensus        84 ~l~~L~~L~l~~~~~l~~l~~~~~-~~-~L~~L~l~~~~~~~~~~~~~~--~L~~L~l~~~~i~-~~~~~~~~~~~L~~L  158 (295)
                      .+++|++|++++|.....+|..+. ++ +|+.|++++|.+.+.+|..+.  +|++|++++|.++ ..|..+..+++|+.|
T Consensus       147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  226 (313)
T 1ogq_A          147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI  226 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred             cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEE
Confidence            999999999999765557777664 65 999999999988777887655  4789999999998 567778999999999


Q ss_pred             ecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEee
Q 039126          159 NLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDF  238 (295)
Q Consensus       159 ~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l  238 (295)
                      ++++|.....+| .+..+++|++|++++|.+.+.+|..+..+  ++|++|+++++..-..+|..     ..+++|+.+++
T Consensus       227 ~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~ip~~-----~~l~~L~~l~l  298 (313)
T 1ogq_A          227 HLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQL--KFLHSLNVSFNNLCGEIPQG-----GNLQRFDVSAY  298 (313)
T ss_dssp             ECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGC--TTCCEEECCSSEEEEECCCS-----TTGGGSCGGGT
T ss_pred             ECCCCceeeecC-cccccCCCCEEECcCCcccCcCChHHhcC--cCCCEEECcCCcccccCCCC-----ccccccChHHh
Confidence            999996554555 48899999999999999988999999998  99999999998654466652     57889999999


Q ss_pred             cCCCCChh
Q 039126          239 INCFKLHQ  246 (295)
Q Consensus       239 ~~c~~l~~  246 (295)
                      .+++.+..
T Consensus       299 ~~N~~lc~  306 (313)
T 1ogq_A          299 ANNKCLCG  306 (313)
T ss_dssp             CSSSEEES
T ss_pred             cCCCCccC
Confidence            99886654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=1.3e-24  Score=188.94  Aligned_cols=205  Identities=22%  Similarity=0.299  Sum_probs=180.8

Q ss_pred             CCCCCcCCCCC-CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc
Q 039126            3 GCPFKSLSSII-RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS   80 (295)
Q Consensus         3 ~~~~~~~p~~~-~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~   80 (295)
                      +..+..+|..+ .+++|++|++++|.+..+|..++.+++|++|++++|.+. .+| .+..+++|++|++++|+..+.+|.
T Consensus        90 ~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~  168 (328)
T 4fcg_A           90 SVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE  168 (328)
T ss_dssp             SSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS
T ss_pred             CCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh
Confidence            34567788744 699999999999999999999999999999999999876 677 699999999999999999998887


Q ss_pred             chhc---------ccCCcEEccccCcCCceeCCccc-CccccEEeccCCCCCcccCcCC---CCCceEEccCcccc-ccc
Q 039126           81 SIRH---------LNKFVARNLKHCRSLTNLSTSIH-LESLKKLILSGCSNLMSFPELF---YNIKELSLDGTAIN-ELP  146 (295)
Q Consensus        81 ~~~~---------l~~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~i~-~~~  146 (295)
                      .+..         +++|++|++++| .++.+|..+. +++|+.|++++|.+. .+|..+   .+|++|++++|.+. .+|
T Consensus       169 ~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p  246 (328)
T 4fcg_A          169 PLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYP  246 (328)
T ss_dssp             CSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCC
T ss_pred             hHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhH
Confidence            7654         999999999996 5567777664 899999999999755 566544   57889999998776 788


Q ss_pred             hhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccc
Q 039126          147 SSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHW  212 (295)
Q Consensus       147 ~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~  212 (295)
                      ..++.+++|+.|++++|...+.+|..++++++|++|++++|.+.+.+|..+..+  ++|+.+++..
T Consensus       247 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L--~~L~~l~l~~  310 (328)
T 4fcg_A          247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL--PANCIILVPP  310 (328)
T ss_dssp             CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS--CTTCEEECCG
T ss_pred             HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc--cCceEEeCCH
Confidence            889999999999999999999999999999999999999999999999999998  9999998875

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.92  E-value=2.9e-24  Score=206.70  Aligned_cols=232  Identities=19%  Similarity=0.198  Sum_probs=196.2

Q ss_pred             CCCCC-CCCCceeEecCCCCcc-ccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcc
Q 039126            9 LSSII-RPKNLVSPEIPRNSIK-QLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHL   85 (295)
Q Consensus         9 ~p~~~-~~~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l   85 (295)
                      +|..+ .+++|+.|++++|.+. .+|..++.+++|++|++++|.+.+.+| .+..+++|++|++++|...+.+|..++.+
T Consensus       434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l  513 (768)
T 3rgz_A          434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL  513 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC
Confidence            45444 5899999999999988 578889999999999999999888888 58899999999999988777889889999


Q ss_pred             cCCcEEccccCcCCceeCCccc-CccccEEeccCCCCCcccCcCC-----------------------------------
Q 039126           86 NKFVARNLKHCRSLTNLSTSIH-LESLKKLILSGCSNLMSFPELF-----------------------------------  129 (295)
Q Consensus        86 ~~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~-----------------------------------  129 (295)
                      ++|++|++++|.....+|..+. +++|+.|++++|.+.+.+|..+                                   
T Consensus       514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (768)
T 3rgz_A          514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL  593 (768)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred             CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence            9999999999877667777664 8999999999987766655422                                   


Q ss_pred             --------------------------------------CCCceEEccCcccc-ccchhhhCCCCCcEEecCCCcCCcCcc
Q 039126          130 --------------------------------------YNIKELSLDGTAIN-ELPSSIEYLSKLVILNLGNSSRLEGLP  170 (295)
Q Consensus       130 --------------------------------------~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~~~~~~~~p  170 (295)
                                                            .+|++|++++|.++ .+|..++.++.|+.|++++|...+.+|
T Consensus       594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  673 (768)
T 3rgz_A          594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP  673 (768)
T ss_dssp             EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence                                                  35778999999998 889999999999999999998888999


Q ss_pred             cccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCChhh
Q 039126          171 SKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQN  247 (295)
Q Consensus       171 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  247 (295)
                      ..++++++|++|++++|.+.+.+|..+..+  ++|++|++++++.-..+|..     ..+.++....+.+++.|-..
T Consensus       674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l--~~L~~L~ls~N~l~g~iP~~-----~~~~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          674 DEVGDLRGLNILDLSSNKLDGRIPQAMSAL--TMLTEIDLSNNNLSGPIPEM-----GQFETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCEECCCGGGGGC--CCCSEEECCSSEEEEECCSS-----SSGGGSCGGGGCSCTEEEST
T ss_pred             hHHhCCCCCCEEECCCCcccCcCChHHhCC--CCCCEEECcCCcccccCCCc-----hhhccCCHHHhcCCchhcCC
Confidence            999999999999999999999999999998  99999999998766677753     24455555566777766543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=4.2e-23  Score=187.05  Aligned_cols=231  Identities=18%  Similarity=0.162  Sum_probs=191.2

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS   80 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~   80 (295)
                      +..+..+|..+ .++++.|+|++|.+..+ +..++++++|++|++++|.+.+..+ .+..+++|++|++++|. +..++.
T Consensus        63 ~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~  140 (452)
T 3zyi_A           63 RRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPS  140 (452)
T ss_dssp             SSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCT
T ss_pred             CCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccCh
Confidence            34566667533 47899999999999987 4678999999999999999876665 59999999999999965 555554


Q ss_pred             -chhcccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCCcccCc----CCCCCceEEccCccccccchhhhCCC
Q 039126           81 -SIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE----LFYNIKELSLDGTAINELPSSIEYLS  153 (295)
Q Consensus        81 -~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~i~~~~~~~~~~~  153 (295)
                       .+..+++|++|++++| .++.++...  .+++|+.|++++|..++.++.    .+.+|++|++++|.++.+| .+..++
T Consensus       141 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~  218 (452)
T 3zyi_A          141 GAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLV  218 (452)
T ss_dssp             TTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCT
T ss_pred             hhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccc
Confidence             4889999999999995 466666543  489999999999877777765    3558899999999999887 477899


Q ss_pred             CCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcc
Q 039126          154 KLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNT  233 (295)
Q Consensus       154 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L  233 (295)
                      +|+.|++++|......|..+.++++|+.|++++|.+.+..+..+..+  ++|+.|+++++ .++.++....   ..+++|
T Consensus       219 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~N-~l~~~~~~~~---~~l~~L  292 (452)
T 3zyi_A          219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL--ASLVELNLAHN-NLSSLPHDLF---TPLRYL  292 (452)
T ss_dssp             TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC--TTCCEEECCSS-CCSCCCTTSS---TTCTTC
T ss_pred             cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC--CCCCEEECCCC-cCCccChHHh---ccccCC
Confidence            99999999997666668889999999999999999888778888887  99999999997 5777765332   578999


Q ss_pred             cEEeecCCCC
Q 039126          234 QSFDFINCFK  243 (295)
Q Consensus       234 ~~L~l~~c~~  243 (295)
                      ++|++++++-
T Consensus       293 ~~L~L~~Np~  302 (452)
T 3zyi_A          293 VELHLHHNPW  302 (452)
T ss_dssp             CEEECCSSCE
T ss_pred             CEEEccCCCc
Confidence            9999998763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=8.1e-23  Score=184.53  Aligned_cols=232  Identities=19%  Similarity=0.151  Sum_probs=190.4

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS   80 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~   80 (295)
                      +..++.+|..+ .++++.|+|++|.+..++ ..+.++++|++|++++|.+....+ .+..+++|++|++++| .++.++.
T Consensus        52 ~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~  129 (440)
T 3zyj_A           52 RKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPN  129 (440)
T ss_dssp             SCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCT
T ss_pred             CCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCH
Confidence            34566677543 478999999999999876 678999999999999998765555 5899999999999996 5556654


Q ss_pred             -chhcccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCCcccCc----CCCCCceEEccCccccccchhhhCCC
Q 039126           81 -SIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE----LFYNIKELSLDGTAINELPSSIEYLS  153 (295)
Q Consensus        81 -~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~i~~~~~~~~~~~  153 (295)
                       .+..+++|++|++++| .++.++...  .+++|+.|++++|...+.++.    .+.+|++|++++|.++.+|. +..++
T Consensus       130 ~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~  207 (440)
T 3zyj_A          130 GAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLI  207 (440)
T ss_dssp             TTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCS
T ss_pred             hHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCc
Confidence             5889999999999995 466666543  489999999999877777665    35588999999999998884 78899


Q ss_pred             CCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcc
Q 039126          154 KLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNT  233 (295)
Q Consensus       154 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L  233 (295)
                      +|+.|++++|......|..+.++++|+.|++++|.+.+..+..+..+  ++|++|+++++ .++.++....   ..+++|
T Consensus       208 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~N-~l~~~~~~~~---~~l~~L  281 (440)
T 3zyj_A          208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL--QSLVEINLAHN-NLTLLPHDLF---TPLHHL  281 (440)
T ss_dssp             SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC--TTCCEEECTTS-CCCCCCTTTT---SSCTTC
T ss_pred             ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC--CCCCEEECCCC-CCCccChhHh---ccccCC
Confidence            99999999996555557889999999999999999888778888887  99999999996 5777765332   578999


Q ss_pred             cEEeecCCCCC
Q 039126          234 QSFDFINCFKL  244 (295)
Q Consensus       234 ~~L~l~~c~~l  244 (295)
                      +.|++++++--
T Consensus       282 ~~L~L~~Np~~  292 (440)
T 3zyj_A          282 ERIHLHHNPWN  292 (440)
T ss_dssp             CEEECCSSCEE
T ss_pred             CEEEcCCCCcc
Confidence            99999987643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.91  E-value=3.4e-23  Score=178.06  Aligned_cols=238  Identities=18%  Similarity=0.177  Sum_probs=187.4

Q ss_pred             CCCCCCcCCCCCCCCCceeEecCCCCccccchh-hcCCCCCcEEecCCCCCCCcC--C-CCCCCCCCcEeeccccccccc
Q 039126            2 HGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKV-VQRLVNLKSINLNHSEHLTEI--P-SLSLATNLESLNFQRYTSLLE   77 (295)
Q Consensus         2 ~~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~L~~~~~~~~~--~-~~~~l~~L~~L~l~~~~~~~~   77 (295)
                      .+..++++|..+ .+++++|++++|.++.+|.. ++++++|++|++++|.+....  + .+..+++|++|++++| .+..
T Consensus        15 ~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~   92 (306)
T 2z66_A           15 NSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVIT   92 (306)
T ss_dssp             CSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEE
T ss_pred             CCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-cccc
Confidence            345577777633 47899999999999999865 689999999999999875432  3 4667899999999996 5567


Q ss_pred             cccchhcccCCcEEccccCcCCceeCC--cc-cCccccEEeccCCCCCcccCcC---CCCCceEEccCccccc--cchhh
Q 039126           78 THSSIRHLNKFVARNLKHCRSLTNLST--SI-HLESLKKLILSGCSNLMSFPEL---FYNIKELSLDGTAINE--LPSSI  149 (295)
Q Consensus        78 ~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~-~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~i~~--~~~~~  149 (295)
                      +|..+..+++|++|++++| .++.++.  .+ .+++|++|++++|...+..+..   +.+|++|++++|.++.  +|..+
T Consensus        93 l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  171 (306)
T 2z66_A           93 MSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF  171 (306)
T ss_dssp             EEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred             ChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH
Confidence            8877899999999999995 4455543  22 4899999999999866555554   4578899999999985  78889


Q ss_pred             hCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhcc
Q 039126          150 EYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKI  229 (295)
Q Consensus       150 ~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  229 (295)
                      ..+++|+.|++++|......|..+..+++|++|++++|.+.+..+..+..+  ++|++|+++++......+...    ..
T Consensus       172 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~----~~  245 (306)
T 2z66_A          172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL--NSLQVLDYSLNHIMTSKKQEL----QH  245 (306)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC--TTCCEEECTTSCCCBCSSSSC----CC
T ss_pred             hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc--ccCCEeECCCCCCcccCHHHH----Hh
Confidence            999999999999996555557889999999999999998877666677777  999999999975433333322    34


Q ss_pred             C-CcccEEeecCCCCChhhh
Q 039126          230 S-RNTQSFDFINCFKLHQNV  248 (295)
Q Consensus       230 ~-~~L~~L~l~~c~~l~~~~  248 (295)
                      + ++|++|++++++--.+..
T Consensus       246 ~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          246 FPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             CCTTCCEEECTTCCEECSGG
T ss_pred             hhccCCEEEccCCCeecccC
Confidence            4 599999999986444433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.90  E-value=5.2e-24  Score=200.80  Aligned_cols=204  Identities=14%  Similarity=0.131  Sum_probs=158.3

Q ss_pred             CCCcCCCCC-CCCCceeEecCCCCccc------------------cchhhc--CCCCCcEEecCCCCCCCcCC-CCCCCC
Q 039126            5 PFKSLSSII-RPKNLVSPEIPRNSIKQ------------------LWKVVQ--RLVNLKSINLNHSEHLTEIP-SLSLAT   62 (295)
Q Consensus         5 ~~~~~p~~~-~~~~L~~L~l~~~~~~~------------------l~~~~~--~l~~L~~L~L~~~~~~~~~~-~~~~l~   62 (295)
                      .++.+|..+ .+++|++|++++|.++.                  +|..++  ++++|++|++++|.+.+.+| .+..++
T Consensus       194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  273 (636)
T 4eco_A          194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP  273 (636)
T ss_dssp             EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred             CCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence            344577655 69999999999999998                  999988  99999999999999999999 699999


Q ss_pred             CCcEeeccccc-ccc-ccccchhcc------cCCcEEccccCcCCceeCC--cc-cCccccEEeccCCCCCcccCcCCC-
Q 039126           63 NLESLNFQRYT-SLL-ETHSSIRHL------NKFVARNLKHCRSLTNLST--SI-HLESLKKLILSGCSNLMSFPELFY-  130 (295)
Q Consensus        63 ~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~l~~l~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~-  130 (295)
                      +|++|++++|. ... .+|..+..+      ++|++|++++|. ++.+|.  .+ .+++|+.|++++|.+.+.+| .++ 
T Consensus       274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~  351 (636)
T 4eco_A          274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS  351 (636)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred             CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence            99999999987 444 688888776      999999999964 447887  44 48899999999998777888 544 


Q ss_pred             --CCceEEccCccccccchhhhCCCC-CcEEecCCCcCCcCcccccCCCC--CCCeeeccCCCCCCCchhhhh-------
Q 039126          131 --NIKELSLDGTAINELPSSIEYLSK-LVILNLGNSSRLEGLPSKICKLK--SLQHLNLSCCSNLESFPNELR-------  198 (295)
Q Consensus       131 --~L~~L~l~~~~i~~~~~~~~~~~~-L~~L~l~~~~~~~~~p~~l~~l~--~L~~L~l~~~~~~~~~~~~l~-------  198 (295)
                        +|++|++++|.++.+|..++.+++ |+.|++++|. +..+|..+..++  +|++|++++|.+.+..|..+.       
T Consensus       352 l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~  430 (636)
T 4eco_A          352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF  430 (636)
T ss_dssp             EEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred             CCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence              567888888888888887888877 8888888874 446776665543  677777777666665555544       


Q ss_pred             ccCCCCcceeecccc
Q 039126          199 NLFPCDLYDIEAHWC  213 (295)
Q Consensus       199 ~~~~~~L~~L~l~~~  213 (295)
                      .+  ++|++|+++++
T Consensus       431 ~~--~~L~~L~Ls~N  443 (636)
T 4eco_A          431 KG--INVSSINLSNN  443 (636)
T ss_dssp             CC--CCEEEEECCSS
T ss_pred             cC--CCCCEEECcCC
Confidence            33  45555555553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.90  E-value=1.5e-22  Score=183.24  Aligned_cols=89  Identities=16%  Similarity=0.167  Sum_probs=42.3

Q ss_pred             CCCcCCCCCCCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeeccccccccccccc
Q 039126            5 PFKSLSSIIRPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETHSS   81 (295)
Q Consensus         5 ~~~~~p~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~   81 (295)
                      .++.+|.  ..++|++|++++|.+.++ |..++++++|++|++++|.+.+.++  .+..+++|++|++++|......|..
T Consensus        21 ~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   98 (455)
T 3v47_A           21 GLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA   98 (455)
T ss_dssp             CCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT
T ss_pred             CcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh
Confidence            3444554  235555555555555544 3445555555555555555443332  2455555555555554333333333


Q ss_pred             hhcccCCcEEcccc
Q 039126           82 IRHLNKFVARNLKH   95 (295)
Q Consensus        82 ~~~l~~L~~L~l~~   95 (295)
                      +..+++|++|++++
T Consensus        99 ~~~l~~L~~L~L~~  112 (455)
T 3v47_A           99 FNGLANLEVLTLTQ  112 (455)
T ss_dssp             TTTCTTCCEEECTT
T ss_pred             ccCcccCCEEeCCC
Confidence            44444444444444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.90  E-value=3.2e-22  Score=173.89  Aligned_cols=225  Identities=16%  Similarity=0.147  Sum_probs=145.1

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS   80 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~   80 (295)
                      +..+..+|..+ .++++.|++++|.++.++. .++++++|++|++++|.+.+..| .+..+++|++|++++| .++.+|.
T Consensus        40 ~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~  117 (330)
T 1xku_A           40 DLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPE  117 (330)
T ss_dssp             TSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCS
T ss_pred             CCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccCh
Confidence            34556666533 4678888998888888765 67888889999998888776656 5888888888888885 4555654


Q ss_pred             chhcccCCcEEccccCcCCceeCCc-c-cCccccEEeccCCCCCc--ccCc---CCCCCceEEccCccccccchhhhCCC
Q 039126           81 SIRHLNKFVARNLKHCRSLTNLSTS-I-HLESLKKLILSGCSNLM--SFPE---LFYNIKELSLDGTAINELPSSIEYLS  153 (295)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~--~~~~---~~~~L~~L~l~~~~i~~~~~~~~~~~  153 (295)
                      .+.  ++|+.|++++| .++.++.. + .+++|+.|++++|....  ..+.   .+.+|++|++++|.++.+|..+.  +
T Consensus       118 ~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~  192 (330)
T 1xku_A          118 KMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--P  192 (330)
T ss_dssp             SCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--T
T ss_pred             hhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--c
Confidence            433  67777777764 33344332 2 36677777777765432  2222   23456677777777766665432  5


Q ss_pred             CCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcc
Q 039126          154 KLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNT  233 (295)
Q Consensus       154 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L  233 (295)
                      +|++|++++|......|..+.++++|++|++++|.+.+..+..+..+  ++|++|+++++ .++.++...    ..+++|
T Consensus       193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~N-~l~~lp~~l----~~l~~L  265 (330)
T 1xku_A          193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT--PHLRELHLNNN-KLVKVPGGL----ADHKYI  265 (330)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS--TTCCEEECCSS-CCSSCCTTT----TTCSSC
T ss_pred             cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC--CCCCEEECCCC-cCccCChhh----ccCCCc
Confidence            67777777764333345566677777777777766655555556655  67777777765 355555433    456677


Q ss_pred             cEEeecCC
Q 039126          234 QSFDFINC  241 (295)
Q Consensus       234 ~~L~l~~c  241 (295)
                      ++|+++++
T Consensus       266 ~~L~l~~N  273 (330)
T 1xku_A          266 QVVYLHNN  273 (330)
T ss_dssp             CEEECCSS
T ss_pred             CEEECCCC
Confidence            77777665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.90  E-value=4.5e-22  Score=169.40  Aligned_cols=214  Identities=19%  Similarity=0.183  Sum_probs=94.8

Q ss_pred             eEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcC
Q 039126           20 SPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRS   98 (295)
Q Consensus        20 ~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   98 (295)
                      +++.+++.++.+|..+  .++|++|++++|.+.+..+ .+..+++|++|++++|......+..+..+++|++|++++|..
T Consensus        15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~   92 (285)
T 1ozn_A           15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (285)
T ss_dssp             EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence            3444444444444322  2344444444444333222 244444455555444322222233344444455555544433


Q ss_pred             CceeCC-cc-cCccccEEeccCCCCCcccCcC---CCCCceEEccCccccccchh-hhCCCCCcEEecCCCcCCcCcc-c
Q 039126           99 LTNLST-SI-HLESLKKLILSGCSNLMSFPEL---FYNIKELSLDGTAINELPSS-IEYLSKLVILNLGNSSRLEGLP-S  171 (295)
Q Consensus        99 l~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~~~~~~~~~p-~  171 (295)
                      ++.++. .+ .+++|+.|++++|.+.+..+..   +.+|++|++++|.++.++.. ++.+++|+.|++++|. +..+| .
T Consensus        93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~  171 (285)
T 1ozn_A           93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPER  171 (285)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTT
T ss_pred             ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHH
Confidence            333322 11 2444555555544433222222   22444555555555544332 4455555555555552 33332 2


Q ss_pred             ccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126          172 KICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF  242 (295)
Q Consensus       172 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~  242 (295)
                      .+.++++|++|++++|.+.+..|..+..+  ++|++|+++++ .++.++...   ...+++|++|++++++
T Consensus       172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDL--GRLMTLYLFAN-NLSALPTEA---LAPLRALQYLRLNDNP  236 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTC--TTCCEEECCSS-CCSCCCHHH---HTTCTTCCEEECCSSC
T ss_pred             HhcCccccCEEECCCCcccccCHhHccCc--ccccEeeCCCC-cCCcCCHHH---cccCcccCEEeccCCC
Confidence            35555555555555555544445555544  55555555554 233333211   1345555555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.90  E-value=3.6e-22  Score=173.73  Aligned_cols=225  Identities=14%  Similarity=0.125  Sum_probs=148.7

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS   80 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~   80 (295)
                      +..+..+|..+ .++++.|++++|.+..++ ..++++++|++|++++|.+.+..| .+..+++|++|++++| .++.+|.
T Consensus        42 ~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~  119 (332)
T 2ft3_A           42 DLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPP  119 (332)
T ss_dssp             SSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCS
T ss_pred             CCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCc
Confidence            34556666543 467888888888888774 467888888888888888766555 5788888888888885 4556665


Q ss_pred             chhcccCCcEEccccCcCCceeCCc-c-cCccccEEeccCCCCCc--ccCcCCC--CCceEEccCccccccchhhhCCCC
Q 039126           81 SIRHLNKFVARNLKHCRSLTNLSTS-I-HLESLKKLILSGCSNLM--SFPELFY--NIKELSLDGTAINELPSSIEYLSK  154 (295)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~--~~~~~~~--~L~~L~l~~~~i~~~~~~~~~~~~  154 (295)
                      .+.  ++|++|++++| .++.++.. + .+++|+.|++++|....  ..+..+.  +|++|++++|.++.+|..+.  ++
T Consensus       120 ~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~--~~  194 (332)
T 2ft3_A          120 NLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ET  194 (332)
T ss_dssp             SCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC--SS
T ss_pred             ccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc--CC
Confidence            443  67888888774 34455543 2 37788888888776532  2333333  56677777777776665432  56


Q ss_pred             CcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCccc
Q 039126          155 LVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQ  234 (295)
Q Consensus       155 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~  234 (295)
                      |+.|++++|......+..+.++++|++|++++|.+.+..+..+..+  ++|++|+++++ .++.++...    ..+++|+
T Consensus       195 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N-~l~~lp~~l----~~l~~L~  267 (332)
T 2ft3_A          195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL--PTLRELHLDNN-KLSRVPAGL----PDLKLLQ  267 (332)
T ss_dssp             CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC--TTCCEEECCSS-CCCBCCTTG----GGCTTCC
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC--CCCCEEECCCC-cCeecChhh----hcCccCC
Confidence            7777777764433344566777777777777776665555566665  77777777765 355555533    4667777


Q ss_pred             EEeecCC
Q 039126          235 SFDFINC  241 (295)
Q Consensus       235 ~L~l~~c  241 (295)
                      +|+++++
T Consensus       268 ~L~l~~N  274 (332)
T 2ft3_A          268 VVYLHTN  274 (332)
T ss_dssp             EEECCSS
T ss_pred             EEECCCC
Confidence            7777765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.90  E-value=7.4e-23  Score=192.90  Aligned_cols=224  Identities=13%  Similarity=0.184  Sum_probs=161.2

Q ss_pred             cCCCCCCCCCceeEecCCCCccccchhhcCCCC-CcEEecCCCCCCCcCC-CCCCC--CCCcEeeccccccccccccchh
Q 039126            8 SLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVN-LKSINLNHSEHLTEIP-SLSLA--TNLESLNFQRYTSLLETHSSIR   83 (295)
Q Consensus         8 ~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~-L~~L~L~~~~~~~~~~-~~~~l--~~L~~L~l~~~~~~~~~~~~~~   83 (295)
                      .+|.+..+++|+.|++++|.+..+|..+..+++ |++|++++|.+. .+| .+..+  ++|++|++++|......|..+.
T Consensus       345 ~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  423 (636)
T 4eco_A          345 KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD  423 (636)
T ss_dssp             ECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred             chhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence            344222355555555555555555555666666 666666666654 555 23333  3677777777655555555555


Q ss_pred             -------cccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCCcccCcCCC-----------CCceEEccCcccc
Q 039126           84 -------HLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPELFY-----------NIKELSLDGTAIN  143 (295)
Q Consensus        84 -------~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~-----------~L~~L~l~~~~i~  143 (295)
                             .+++|++|++++| .++.+|...  .+++|+.|++++|.+. .+|....           +|++|++++|.++
T Consensus       424 ~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  501 (636)
T 4eco_A          424 PLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT  501 (636)
T ss_dssp             TTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred             ccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC
Confidence                   6667888888774 444666554  2788999999998755 6665432           7889999999999


Q ss_pred             ccchhhh--CCCCCcEEecCCCcCCcCcccccCCCCCCCeeec------cCCCCCCCchhhhhccCCCCcceeecccccc
Q 039126          144 ELPSSIE--YLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNL------SCCSNLESFPNELRNLFPCDLYDIEAHWCSS  215 (295)
Q Consensus       144 ~~~~~~~--~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l------~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~  215 (295)
                      .+|..+.  .+++|+.|++++|. +..+|..+.++++|++|++      ++|.+.+.+|..+..+  ++|++|++++|. 
T Consensus       502 ~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l--~~L~~L~Ls~N~-  577 (636)
T 4eco_A          502 KLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC--PSLTQLQIGSND-  577 (636)
T ss_dssp             BCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC--SSCCEEECCSSC-
T ss_pred             ccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC--CCCCEEECCCCc-
Confidence            9998887  89999999999985 4458988999999999999      4567788899999888  999999999975 


Q ss_pred             cccccccchhhhccCCcccEEeecCCCCC
Q 039126          216 LETLSGLSIIFTKISRNTQSFDFINCFKL  244 (295)
Q Consensus       216 l~~~~~~~~~~~~~~~~L~~L~l~~c~~l  244 (295)
                      ++.+|..      ..++|++|++++|+-.
T Consensus       578 l~~ip~~------~~~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          578 IRKVNEK------ITPNISVLDIKDNPNI  600 (636)
T ss_dssp             CCBCCSC------CCTTCCEEECCSCTTC
T ss_pred             CCccCHh------HhCcCCEEECcCCCCc
Confidence            5888873      3489999999998643

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.89  E-value=9.4e-22  Score=184.29  Aligned_cols=177  Identities=24%  Similarity=0.171  Sum_probs=93.2

Q ss_pred             CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc-hhcccCCcEE
Q 039126           14 RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS-IRHLNKFVAR   91 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L   91 (295)
                      .+++|++|++++|.++.+|..++.+++|++|++++|.+.+..| .+..+++|++|++++|.....++.. +..+++|++|
T Consensus       276 ~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  355 (606)
T 3t6q_A          276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL  355 (606)
T ss_dssp             TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred             cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence            4667777777777777777666777777777777776554444 4566666666666665544444433 5556666666


Q ss_pred             ccccCcCCcee--CCcc-cCccccEEeccCCCCCcccCcCC---CCCceEEccCcccccc-c-hhhhCCCCCcEEecCCC
Q 039126           92 NLKHCRSLTNL--STSI-HLESLKKLILSGCSNLMSFPELF---YNIKELSLDGTAINEL-P-SSIEYLSKLVILNLGNS  163 (295)
Q Consensus        92 ~l~~~~~l~~l--~~~~-~~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~i~~~-~-~~~~~~~~L~~L~l~~~  163 (295)
                      ++++|......  +..+ .+++|+.|++++|...+..|..+   .+|++|++++|.+... + ..+..+++|+.|++++|
T Consensus       356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  435 (606)
T 3t6q_A          356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS  435 (606)
T ss_dssp             ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred             ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence            66654322221  2222 25555555555554433333322   2444555555554422 1 22444555555555554


Q ss_pred             cCCcCcccccCCCCCCCeeeccCCCCC
Q 039126          164 SRLEGLPSKICKLKSLQHLNLSCCSNL  190 (295)
Q Consensus       164 ~~~~~~p~~l~~l~~L~~L~l~~~~~~  190 (295)
                      ......|..++++++|++|++++|.+.
T Consensus       436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~  462 (606)
T 3t6q_A          436 LLDISSEQLFDGLPALQHLNLQGNHFP  462 (606)
T ss_dssp             CCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred             ccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence            333333444444555555555554443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=8.1e-22  Score=179.65  Aligned_cols=231  Identities=17%  Similarity=0.209  Sum_probs=143.9

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS   80 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~   80 (295)
                      +..+..+|..+ .++++.|++++|.++.++ ..+.++++|++|++++|.+.+..| .+..+++|++|++++| .+..+|.
T Consensus        20 ~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~   97 (477)
T 2id5_A           20 RKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPL   97 (477)
T ss_dssp             SCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCT
T ss_pred             CCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCc
Confidence            34556666533 467888888888888764 567888888888888887766656 5888888888888885 4555554


Q ss_pred             -chhcccCCcEEccccCcCCceeCCcc-cCccccEEeccCCCCCcccCcC---CCCCceEEccCccccccch-hhhCCCC
Q 039126           81 -SIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPEL---FYNIKELSLDGTAINELPS-SIEYLSK  154 (295)
Q Consensus        81 -~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~i~~~~~-~~~~~~~  154 (295)
                       .+..+++|++|++++|......+..+ .+++|+.|++++|.+....+..   +.+|++|++++|.++.++. .+..+++
T Consensus        98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  177 (477)
T 2id5_A           98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG  177 (477)
T ss_dssp             TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred             ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence             46778888888888754433333333 3778888888877654443433   3366677777777776654 3566666


Q ss_pred             CcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchh------------------------hhhccCCCCcceeec
Q 039126          155 LVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPN------------------------ELRNLFPCDLYDIEA  210 (295)
Q Consensus       155 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~------------------------~l~~~~~~~L~~L~l  210 (295)
                      |+.|++++|......+..+..+++|+.|++++|...+.++.                        .+..+  ++|++|++
T Consensus       178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L  255 (477)
T 2id5_A          178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL--VYLRFLNL  255 (477)
T ss_dssp             CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC--TTCCEEEC
T ss_pred             CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc--cccCeeEC
Confidence            66666666643333334455555555555555544444433                        34444  56666666


Q ss_pred             ccccccccccccchhhhccCCcccEEeecCC
Q 039126          211 HWCSSLETLSGLSIIFTKISRNTQSFDFINC  241 (295)
Q Consensus       211 ~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c  241 (295)
                      +++. ++.++...   ...+++|++|+++++
T Consensus       256 s~n~-l~~~~~~~---~~~l~~L~~L~L~~n  282 (477)
T 2id5_A          256 SYNP-ISTIEGSM---LHELLRLQEIQLVGG  282 (477)
T ss_dssp             CSSC-CCEECTTS---CTTCTTCCEEECCSS
T ss_pred             CCCc-CCccChhh---ccccccCCEEECCCC
Confidence            6543 34433321   135566666666654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.89  E-value=8.1e-22  Score=178.46  Aligned_cols=111  Identities=16%  Similarity=0.050  Sum_probs=71.2

Q ss_pred             CCceEEccCcccccc-chhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceee
Q 039126          131 NIKELSLDGTAINEL-PSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIE  209 (295)
Q Consensus       131 ~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~  209 (295)
                      +|++|++++|.++.+ +..++.+++|+.|++++|......|..+.++++|++|++++|.+.+..|..+..+  ++|++|+
T Consensus       300 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~  377 (455)
T 3v47_A          300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL--PNLKELA  377 (455)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC--TTCCEEE
T ss_pred             CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc--ccccEEE
Confidence            455666666666644 3456666777777777764433345566777777777777777666666666666  7777777


Q ss_pred             cccccccccccccchhhhccCCcccEEeecCCCCChhh
Q 039126          210 AHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQN  247 (295)
Q Consensus       210 l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  247 (295)
                      ++++ .++.++...   ...+++|++|++++++--.+.
T Consensus       378 L~~N-~l~~~~~~~---~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          378 LDTN-QLKSVPDGI---FDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             CCSS-CCSCCCTTT---TTTCTTCCEEECCSSCBCCCT
T ss_pred             CCCC-ccccCCHhH---hccCCcccEEEccCCCcccCC
Confidence            7775 356555422   146778888888776544443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.89  E-value=1.3e-21  Score=183.27  Aligned_cols=238  Identities=15%  Similarity=0.097  Sum_probs=141.0

Q ss_pred             CCCCCcCCCCC-CCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeecccccccccc
Q 039126            3 GCPFKSLSSII-RPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLET   78 (295)
Q Consensus         3 ~~~~~~~p~~~-~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~   78 (295)
                      +..+.++|..+ .+++|++|++++|.+..+ |..++.+++|++|++++|.+.+.+|  .+..+++|++|++++|......
T Consensus       287 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  366 (606)
T 3t6q_A          287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD  366 (606)
T ss_dssp             TSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred             CCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence            45677788655 589999999999999876 4677899999999999998876776  3788888888888886544333


Q ss_pred             --ccchhcccCCcEEccccCcCCceeCCcc-cCccccEEeccCCCCCcccCc----CCCCCceEEccCcccccc-chh--
Q 039126           79 --HSSIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPE----LFYNIKELSLDGTAINEL-PSS--  148 (295)
Q Consensus        79 --~~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~i~~~-~~~--  148 (295)
                        +..+..+++|++|++++|......+..+ .+++|+.|++++|...+..+.    .+.+|++|++++|.++.. +..  
T Consensus       367 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  446 (606)
T 3t6q_A          367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD  446 (606)
T ss_dssp             ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred             CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh
Confidence              4557777788888887754333323322 255566666665543332221    123444555555544422 333  


Q ss_pred             -------------------------hhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCC
Q 039126          149 -------------------------IEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPC  203 (295)
Q Consensus       149 -------------------------~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~  203 (295)
                                               +..+++|+.|++++|......|..+.++++|++|++++|.+.+..|..+..+  +
T Consensus       447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l--~  524 (606)
T 3t6q_A          447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL--K  524 (606)
T ss_dssp             TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC--C
T ss_pred             CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcc--c
Confidence                                     4444555555555553333334445555555555555555555555555554  5


Q ss_pred             CcceeecccccccccccccchhhhccCCcccEEeecCCCCChhh
Q 039126          204 DLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQN  247 (295)
Q Consensus       204 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  247 (295)
                      +| +|+++++. ++.++...   ...+++|+.+++++++-..+.
T Consensus       525 ~L-~L~L~~N~-l~~~~~~~---~~~l~~L~~L~l~~N~~~c~c  563 (606)
T 3t6q_A          525 GI-YLNLASNH-ISIILPSL---LPILSQQRTINLRQNPLDCTC  563 (606)
T ss_dssp             SC-EEECCSSC-CCCCCGGG---HHHHHTSSEEECTTCCEECSG
T ss_pred             cc-EEECcCCc-ccccCHhh---cccCCCCCEEeCCCCCccccC
Confidence            55 55555543 33333211   134566666666666543333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.89  E-value=2.9e-22  Score=178.09  Aligned_cols=104  Identities=13%  Similarity=0.122  Sum_probs=53.3

Q ss_pred             CCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc-hhcccCCcEE
Q 039126           15 PKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS-IRHLNKFVAR   91 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L   91 (295)
                      +++|++|++++|.+..++. .++.+++|++|++++|.+.+..| .+..+++|++|++++| .++.+|.. +..+++|++|
T Consensus        68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L  146 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTL  146 (390)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEE
Confidence            5556666666665555542 45556666666666665544434 2555666666666553 33344433 3555566666


Q ss_pred             ccccCcCCceeCCc-c-cCccccEEeccCCC
Q 039126           92 NLKHCRSLTNLSTS-I-HLESLKKLILSGCS  120 (295)
Q Consensus        92 ~l~~~~~l~~l~~~-~-~~~~L~~L~l~~~~  120 (295)
                      ++++|. ++.++.. + .+++|+.|++++|.
T Consensus       147 ~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          147 SMSNNN-LERIEDDTFQATTSLQNLQLSSNR  176 (390)
T ss_dssp             ECCSSC-CCBCCTTTTSSCTTCCEEECCSSC
T ss_pred             ECCCCc-cCccChhhccCCCCCCEEECCCCc
Confidence            665543 2222221 2 24555555555543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=1.1e-21  Score=178.76  Aligned_cols=224  Identities=20%  Similarity=0.179  Sum_probs=154.5

Q ss_pred             CCCCceeEecCCCCccccchh-hcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEE
Q 039126           14 RPKNLVSPEIPRNSIKQLWKV-VQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVAR   91 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   91 (295)
                      .+++|++|+|++|.+..+|.. +.++++|++|++++|.+.+..+ .+..+++|++|++++|......+..+..+++|+.|
T Consensus        78 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  157 (477)
T 2id5_A           78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL  157 (477)
T ss_dssp             TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred             CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE
Confidence            467777777777777666543 4666777777777766555444 35666666666666643333333344455555555


Q ss_pred             ccccCc-----------------------CCceeCC-cc-cCccccEEeccCCCCCcccCcCCC---CCceEEccCcccc
Q 039126           92 NLKHCR-----------------------SLTNLST-SI-HLESLKKLILSGCSNLMSFPELFY---NIKELSLDGTAIN  143 (295)
Q Consensus        92 ~l~~~~-----------------------~l~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~i~  143 (295)
                      ++++|.                       .+..++. .+ .+++|+.|++++|...+.+|....   +|++|++++|.++
T Consensus       158 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  237 (477)
T 2id5_A          158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT  237 (477)
T ss_dssp             EEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC
T ss_pred             ECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc
Confidence            555432                       2222222 12 266777777777766666655332   7889999999999


Q ss_pred             ccch-hhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccccccccccc
Q 039126          144 ELPS-SIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGL  222 (295)
Q Consensus       144 ~~~~-~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~  222 (295)
                      .+|. .+..+++|+.|++++|......+..+.++++|+.|++++|.+.+..|..+..+  ++|++|+++++ .++.++..
T Consensus       238 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~N-~l~~~~~~  314 (477)
T 2id5_A          238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL--NYLRVLNVSGN-QLTTLEES  314 (477)
T ss_dssp             SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC--TTCCEEECCSS-CCSCCCGG
T ss_pred             ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCc--ccCCEEECCCC-cCceeCHh
Confidence            8874 57889999999999986544445678899999999999999888888888888  99999999996 56776653


Q ss_pred             chhhhccCCcccEEeecCCCC
Q 039126          223 SIIFTKISRNTQSFDFINCFK  243 (295)
Q Consensus       223 ~~~~~~~~~~L~~L~l~~c~~  243 (295)
                      ..   ..+++|++|++++++-
T Consensus       315 ~~---~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          315 VF---HSVGNLETLILDSNPL  332 (477)
T ss_dssp             GB---SCGGGCCEEECCSSCE
T ss_pred             Hc---CCCcccCEEEccCCCc
Confidence            21   5789999999998764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.89  E-value=2.2e-21  Score=169.53  Aligned_cols=229  Identities=20%  Similarity=0.260  Sum_probs=150.3

Q ss_pred             CCCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccc
Q 039126            2 HGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSS   81 (295)
Q Consensus         2 ~~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~   81 (295)
                      .+..+.++|.+..+++|++|++++|.+++++. +..+++|++|++++|.+. .++.+..+++|++|++++|. +..++. 
T Consensus        52 ~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~-~~~~~~~l~~L~~L~l~~n~-i~~~~~-  127 (347)
T 4fmz_A           52 AGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKIT-DISALQNLTNLRELYLNEDN-ISDISP-  127 (347)
T ss_dssp             CSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGGGTTCTTCSEEECTTSC-CCCCGG-
T ss_pred             eCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCccc-CchHHcCCCcCCEEECcCCc-ccCchh-
Confidence            35566777776678889999999888888776 888888999998888753 45678888888888888854 444443 


Q ss_pred             hhcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccC-cCCCCCceEEccCccc------------------
Q 039126           82 IRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFP-ELFYNIKELSLDGTAI------------------  142 (295)
Q Consensus        82 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~i------------------  142 (295)
                      +..+++|+.|++++|......+....+++|++|++++|......+ ..+.+|++|++++|.+                  
T Consensus       128 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~  207 (347)
T 4fmz_A          128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAY  207 (347)
T ss_dssp             GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred             hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecc
Confidence            677777888888777666655543345666666666554322111 1233444555555444                  


Q ss_pred             ----cccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccccccc
Q 039126          143 ----NELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLET  218 (295)
Q Consensus       143 ----~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~  218 (295)
                          ..++. +..+++|+.|++++|. +..++. +..+++|++|++++|.+.+ + ..+..+  ++|++|++++| .++.
T Consensus       208 ~n~l~~~~~-~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l--~~L~~L~l~~n-~l~~  279 (347)
T 4fmz_A          208 VNQITDITP-VANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTNQISD-I-NAVKDL--TKLKMLNVGSN-QISD  279 (347)
T ss_dssp             SSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCC-C-GGGTTC--TTCCEEECCSS-CCCC
T ss_pred             cCCCCCCch-hhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCCccCC-C-hhHhcC--CCcCEEEccCC-ccCC
Confidence                43333 5566677777777763 444444 6777788888888776544 3 345555  78888888876 4555


Q ss_pred             ccccchhhhccCCcccEEeecCCCCChhhh
Q 039126          219 LSGLSIIFTKISRNTQSFDFINCFKLHQNV  248 (295)
Q Consensus       219 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  248 (295)
                      ++.     ...+++|++|++++|. ++...
T Consensus       280 ~~~-----~~~l~~L~~L~L~~n~-l~~~~  303 (347)
T 4fmz_A          280 ISV-----LNNLSQLNSLFLNNNQ-LGNED  303 (347)
T ss_dssp             CGG-----GGGCTTCSEEECCSSC-CCGGG
T ss_pred             Chh-----hcCCCCCCEEECcCCc-CCCcC
Confidence            542     2577888888888884 44443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=3.6e-22  Score=186.94  Aligned_cols=216  Identities=13%  Similarity=0.072  Sum_probs=108.8

Q ss_pred             CCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc-hhcccCCcEE
Q 039126           15 PKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS-IRHLNKFVAR   91 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L   91 (295)
                      +++|++|++++|.+..++ ..++.+++|++|++++|.+.+..| .+..+++|++|++++| .+..+|.. +..+++|++|
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTL  152 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEE
Confidence            555555555555555543 245555555555555555444333 2455555555555553 23334333 3555555555


Q ss_pred             ccccCcCCceeCCcc-cCccccEEeccCCCCCcccC--------------------------------------------
Q 039126           92 NLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFP--------------------------------------------  126 (295)
Q Consensus        92 ~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~--------------------------------------------  126 (295)
                      ++++|......+..+ .+++|+.|++++|.+.+.-+                                            
T Consensus       153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~  232 (597)
T 3oja_B          153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV  232 (597)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCS
T ss_pred             EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCC
Confidence            555542222222112 24445555554443221100                                            


Q ss_pred             ------------------cCCCCCceEEccCcccccc-chhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCC
Q 039126          127 ------------------ELFYNIKELSLDGTAINEL-PSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCC  187 (295)
Q Consensus       127 ------------------~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~  187 (295)
                                        ..+++|++|++++|.++.+ |..++.+++|+.|++++| .+..+|..+..+++|+.|++++|
T Consensus       233 ~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N  311 (597)
T 3oja_B          233 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN  311 (597)
T ss_dssp             CCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS
T ss_pred             CCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC
Confidence                              0122444555555555432 444555555666666555 33444555555666666666665


Q ss_pred             CCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126          188 SNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF  242 (295)
Q Consensus       188 ~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~  242 (295)
                      .+. .+|..+..+  ++|++|++++|. ++.++.      ..+++|+.|++++++
T Consensus       312 ~l~-~i~~~~~~l--~~L~~L~L~~N~-l~~~~~------~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          312 HLL-HVERNQPQF--DRLENLYLDHNS-IVTLKL------STHHTLKNLTLSHND  356 (597)
T ss_dssp             CCC-CCGGGHHHH--TTCSEEECCSSC-CCCCCC------CTTCCCSEEECCSSC
T ss_pred             CCC-ccCcccccC--CCCCEEECCCCC-CCCcCh------hhcCCCCEEEeeCCC
Confidence            543 455555555  666666666653 444443      456677777777764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.89  E-value=2.5e-21  Score=169.16  Aligned_cols=226  Identities=19%  Similarity=0.214  Sum_probs=135.3

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeecccccccccccc--
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHS--   80 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--   80 (295)
                      ++.+.+++.+..+++|++|++++|.++.++ .+..+++|++|++++|.+. ..+.+..+++|++|++++|.....++.  
T Consensus        75 ~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  152 (347)
T 4fmz_A           75 GNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNIS-DISPLANLTKMYSLNLGANHNLSDLSPLS  152 (347)
T ss_dssp             SSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCC-CCGGGTTCTTCCEEECTTCTTCCCCGGGT
T ss_pred             CCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCccc-CchhhccCCceeEEECCCCCCcccccchh
Confidence            345555555445777777777777666654 4666777777777776643 333355666666666666544433332  


Q ss_pred             -------------------chhcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCccc-CcCCCCCceEEccCc
Q 039126           81 -------------------SIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSF-PELFYNIKELSLDGT  140 (295)
Q Consensus        81 -------------------~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~  140 (295)
                                         .+..+++|+.|++++| .++.++....+++|+.+++++|...... ...+.+|++|++++|
T Consensus       153 ~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n  231 (347)
T 4fmz_A          153 NMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYN-QIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN  231 (347)
T ss_dssp             TCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTS-CCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred             hCCCCcEEEecCCCcCCchhhccCCCCCEEEccCC-cccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCC
Confidence                               1334444445544443 2223332223455555555555432211 123457788888888


Q ss_pred             cccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccccccccc
Q 039126          141 AINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLS  220 (295)
Q Consensus       141 ~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~  220 (295)
                      .++.++. +..+++|+.|++++| .+..++ .+..+++|++|++++|.+.+ + ..+..+  ++|++|++++|. ++...
T Consensus       232 ~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~n~l~~-~-~~~~~l--~~L~~L~L~~n~-l~~~~  303 (347)
T 4fmz_A          232 KITDLSP-LANLSQLTWLEIGTN-QISDIN-AVKDLTKLKMLNVGSNQISD-I-SVLNNL--SQLNSLFLNNNQ-LGNED  303 (347)
T ss_dssp             CCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCCCC-C-GGGGGC--TTCSEEECCSSC-CCGGG
T ss_pred             ccCCCcc-hhcCCCCCEEECCCC-ccCCCh-hHhcCCCcCEEEccCCccCC-C-hhhcCC--CCCCEEECcCCc-CCCcC
Confidence            8887766 777888888888887 344453 47778888888888876544 3 345555  888888888775 34333


Q ss_pred             ccchhhhccCCcccEEeecCCC
Q 039126          221 GLSIIFTKISRNTQSFDFINCF  242 (295)
Q Consensus       221 ~~~~~~~~~~~~L~~L~l~~c~  242 (295)
                      ...   ...+++|++|++++|+
T Consensus       304 ~~~---l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          304 MEV---IGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             HHH---HHTCTTCSEEECCSSS
T ss_pred             hhH---hhccccCCEEEccCCc
Confidence            211   1467888888888875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.88  E-value=4.6e-21  Score=166.54  Aligned_cols=233  Identities=16%  Similarity=0.183  Sum_probs=181.3

Q ss_pred             CCCCCcCCC--CCCCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccc
Q 039126            3 GCPFKSLSS--IIRPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLET   78 (295)
Q Consensus         3 ~~~~~~~p~--~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~   78 (295)
                      +..+..++.  +..+++|++|++++|.+..+ |..++.+++|++|++++|.+. .+| .+.  ++|++|++++|......
T Consensus        61 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~  137 (330)
T 1xku_A           61 NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVR  137 (330)
T ss_dssp             SSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBC
T ss_pred             CCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccC
Confidence            455667765  34699999999999999987 778999999999999999865 566 333  79999999997554444


Q ss_pred             ccchhcccCCcEEccccCcCCc--eeCCcc-cCccccEEeccCCCCCcccCcCC-CCCceEEccCcccccc-chhhhCCC
Q 039126           79 HSSIRHLNKFVARNLKHCRSLT--NLSTSI-HLESLKKLILSGCSNLMSFPELF-YNIKELSLDGTAINEL-PSSIEYLS  153 (295)
Q Consensus        79 ~~~~~~l~~L~~L~l~~~~~l~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~i~~~-~~~~~~~~  153 (295)
                      +..+..+++|+.|++++|..-.  ..+..+ .+++|+.|++++|.+ ..+|..+ .+|++|++++|.++.+ +..+..++
T Consensus       138 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  216 (330)
T 1xku_A          138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLPPSLTELHLDGNKITKVDAASLKGLN  216 (330)
T ss_dssp             HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred             HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-ccCCccccccCCEEECCCCcCCccCHHHhcCCC
Confidence            4568899999999999965432  333333 489999999999864 4566543 5899999999999866 56788999


Q ss_pred             CCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhh---hccC
Q 039126          154 KLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIF---TKIS  230 (295)
Q Consensus       154 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~  230 (295)
                      +|+.|++++|......+..+..+++|++|++++|.+. .+|..+..+  ++|++|+++++. ++.++......   ....
T Consensus       217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l--~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~  292 (330)
T 1xku_A          217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH--KYIQVVYLHNNN-ISAIGSNDFCPPGYNTKK  292 (330)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC--SSCCEEECCSSC-CCCCCTTSSSCSSCCTTS
T ss_pred             CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccC--CCcCEEECCCCc-CCccChhhcCCccccccc
Confidence            9999999998654444557889999999999998765 788888887  999999999864 67776532210   1135


Q ss_pred             CcccEEeecCCCC
Q 039126          231 RNTQSFDFINCFK  243 (295)
Q Consensus       231 ~~L~~L~l~~c~~  243 (295)
                      ++++.+++.+++-
T Consensus       293 ~~l~~l~l~~N~~  305 (330)
T 1xku_A          293 ASYSGVSLFSNPV  305 (330)
T ss_dssp             CCCSEEECCSSSS
T ss_pred             ccccceEeecCcc
Confidence            7889999998874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.88  E-value=1.1e-21  Score=189.35  Aligned_cols=216  Identities=14%  Similarity=0.196  Sum_probs=122.8

Q ss_pred             CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCC-CcEeeccccccccccccchhccc--CCc
Q 039126           14 RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATN-LESLNFQRYTSLLETHSSIRHLN--KFV   89 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l~--~L~   89 (295)
                      .+++|+.|++++|.+..+| .++.+++|+.|++++|.+. .+| .+..+++ |++|++++|. +..+|..+..+.  +|+
T Consensus       571 ~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~  647 (876)
T 4ecn_A          571 KMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMG  647 (876)
T ss_dssp             TCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEE
T ss_pred             cCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCC
Confidence            3555555555555555444 4455555555555555443 344 3444554 5555555533 223443332221  133


Q ss_pred             EEccccCcC----------------------------CceeCCcc--cCccccEEeccCCCCCcccCcCCC---------
Q 039126           90 ARNLKHCRS----------------------------LTNLSTSI--HLESLKKLILSGCSNLMSFPELFY---------  130 (295)
Q Consensus        90 ~L~l~~~~~----------------------------l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~---------  130 (295)
                      .|++++|..                            ++.+|...  .+++|+.|++++|.+. .+|....         
T Consensus       648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~n  726 (876)
T 4ecn_A          648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKN  726 (876)
T ss_dssp             EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTT
T ss_pred             EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccc
Confidence            333333221                            22233222  2456666666666433 4554321         


Q ss_pred             --CCceEEccCccccccchhhh--CCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccC------CCCCCCchhhhhcc
Q 039126          131 --NIKELSLDGTAINELPSSIE--YLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSC------CSNLESFPNELRNL  200 (295)
Q Consensus       131 --~L~~L~l~~~~i~~~~~~~~--~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~------~~~~~~~~~~l~~~  200 (295)
                        +|++|++++|.++.+|..+.  .+++|+.|++++|. +..+|..+..+++|+.|++++      |.+.+.+|..+..+
T Consensus       727 l~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L  805 (876)
T 4ecn_A          727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC  805 (876)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred             cCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence              56677777777777777665  67777777777774 444677777777777777755      55666777777776


Q ss_pred             CCCCcceeecccccccccccccchhhhccCCcccEEeecCCCC
Q 039126          201 FPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFK  243 (295)
Q Consensus       201 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~  243 (295)
                        ++|+.|++++|. ++.+|..      ..++|+.|++++|+.
T Consensus       806 --~~L~~L~Ls~N~-L~~Ip~~------l~~~L~~LdLs~N~l  839 (876)
T 4ecn_A          806 --PSLIQLQIGSND-IRKVDEK------LTPQLYILDIADNPN  839 (876)
T ss_dssp             --SSCCEEECCSSC-CCBCCSC------CCSSSCEEECCSCTT
T ss_pred             --CCCCEEECCCCC-CCccCHh------hcCCCCEEECCCCCC
Confidence              778888887765 4666662      336788888888763

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.88  E-value=2.3e-22  Score=176.44  Aligned_cols=236  Identities=19%  Similarity=0.152  Sum_probs=181.4

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS   80 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~   80 (295)
                      +..++++|..+ .++|++|++++|.++.++. .++++++|++|++++|.+.+..+ .+..+++|++|++++| .++.++.
T Consensus        40 ~~~l~~iP~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~  117 (353)
T 2z80_A           40 SGSLNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSS  117 (353)
T ss_dssp             STTCSSCCTTC-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCH
T ss_pred             CCCcccccccc-cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCH
Confidence            34566777633 3589999999999998875 78999999999999998776666 5899999999999996 4556665


Q ss_pred             c-hhcccCCcEEccccCcCCceeCC--cc-cCccccEEeccCCCCCcccC-cCC---CCCceEEccCcccccc-chhhhC
Q 039126           81 S-IRHLNKFVARNLKHCRSLTNLST--SI-HLESLKKLILSGCSNLMSFP-ELF---YNIKELSLDGTAINEL-PSSIEY  151 (295)
Q Consensus        81 ~-~~~l~~L~~L~l~~~~~l~~l~~--~~-~~~~L~~L~l~~~~~~~~~~-~~~---~~L~~L~l~~~~i~~~-~~~~~~  151 (295)
                      . +..+++|++|++++| .++.++.  .+ .+++|++|++++|...+.++ ..+   .+|++|++++|.++.+ |..++.
T Consensus       118 ~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~  196 (353)
T 2z80_A          118 SWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS  196 (353)
T ss_dssp             HHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred             hHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc
Confidence            4 889999999999985 5556665  23 48999999999986555553 333   4667889999998855 777888


Q ss_pred             CCCCcEEecCCCcCCcCcccc-cCCCCCCCeeeccCCCCCCC-------------------------------chhhhhc
Q 039126          152 LSKLVILNLGNSSRLEGLPSK-ICKLKSLQHLNLSCCSNLES-------------------------------FPNELRN  199 (295)
Q Consensus       152 ~~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~~~-------------------------------~~~~l~~  199 (295)
                      +++|++|++++|. +..+|.. +..+++|++|++++|.+.+.                               +|..+..
T Consensus       197 l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~  275 (353)
T 2z80_A          197 IQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ  275 (353)
T ss_dssp             CSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHT
T ss_pred             cccCCeecCCCCc-cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhc
Confidence            8999999999885 5556543 34578888888888876552                               4556667


Q ss_pred             cCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCChhhh
Q 039126          200 LFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNV  248 (295)
Q Consensus       200 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  248 (295)
                      +  ++|++|+++++ .++.++....   ..+++|++|++++++-..+.+
T Consensus       276 l--~~L~~L~Ls~N-~l~~i~~~~~---~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          276 I--SGLLELEFSRN-QLKSVPDGIF---DRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             C--TTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSSCBCCCHH
T ss_pred             c--cCCCEEECCCC-CCCccCHHHH---hcCCCCCEEEeeCCCccCcCC
Confidence            6  99999999997 5677776421   578999999999997655543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.88  E-value=4.4e-21  Score=163.25  Aligned_cols=210  Identities=17%  Similarity=0.082  Sum_probs=171.8

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccc-c
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLET-H   79 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~-~   79 (295)
                      +..++.+|.. ..+++++|++++|.++.++ ..++.+++|++|++++|.+.+..| .+..+++|++|++++|..++.+ +
T Consensus        20 ~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~   98 (285)
T 1ozn_A           20 QQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP   98 (285)
T ss_dssp             SSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred             cCCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence            3456667643 3679999999999999887 568999999999999998876656 6999999999999998756666 5


Q ss_pred             cchhcccCCcEEccccCcCCceeCCcc-cCccccEEeccCCCCCcccCc---CCCCCceEEccCccccccch-hhhCCCC
Q 039126           80 SSIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPE---LFYNIKELSLDGTAINELPS-SIEYLSK  154 (295)
Q Consensus        80 ~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~~~-~~~~~~~  154 (295)
                      ..+..+++|++|++++|......+..+ .+++|++|++++|.+....+.   .+.+|++|++++|.++.++. .+..+++
T Consensus        99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  178 (285)
T 1ozn_A           99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS  178 (285)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccc
Confidence            678999999999999965433334333 489999999999875543333   34588999999999998876 4788999


Q ss_pred             CcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccc
Q 039126          155 LVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSS  215 (295)
Q Consensus       155 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~  215 (295)
                      |+.|++++|......|..+.++++|+.|++++|.+.+..+..+..+  ++|++|++++++-
T Consensus       179 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~N~~  237 (285)
T 1ozn_A          179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL--RALQYLRLNDNPW  237 (285)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC--TTCCEEECCSSCE
T ss_pred             cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccC--cccCEEeccCCCc
Confidence            9999999997655668889999999999999998887666778887  9999999998753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.88  E-value=9e-21  Score=168.42  Aligned_cols=225  Identities=16%  Similarity=0.132  Sum_probs=152.8

Q ss_pred             CCCCCcCCC-C-CCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-C-CCCCCCCcEeeccccccccc
Q 039126            3 GCPFKSLSS-I-IRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-S-LSLATNLESLNFQRYTSLLE   77 (295)
Q Consensus         3 ~~~~~~~p~-~-~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~-~~~l~~L~~L~l~~~~~~~~   77 (295)
                      +..+..++. . ..+++|++|++++|.+..++ ..++.+++|++|++++|.+. .+| . +..+++|++|++++|.....
T Consensus        78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~  156 (390)
T 3o6n_A           78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI  156 (390)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCcc
Confidence            345566654 3 35889999999999888775 45788999999999999865 455 3 68889999999998655444


Q ss_pred             cccchhcccCCcEEccccCcCCceeCCcccC----------------------------------------ccccEEecc
Q 039126           78 THSSIRHLNKFVARNLKHCRSLTNLSTSIHL----------------------------------------ESLKKLILS  117 (295)
Q Consensus        78 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~----------------------------------------~~L~~L~l~  117 (295)
                      .+..+..+++|++|++++|. ++.++.. .+                                        ++|+.|+++
T Consensus       157 ~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~  234 (390)
T 3o6n_A          157 EDDTFQATTSLQNLQLSSNR-LTHVDLS-LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ  234 (390)
T ss_dssp             CTTTTSSCTTCCEEECCSSC-CSBCCGG-GCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECC
T ss_pred             ChhhccCCCCCCEEECCCCc-CCccccc-cccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECC
Confidence            45567888888888888853 3322211 11                                        234444444


Q ss_pred             CCCCCcccC--cCCCCCceEEccCcccccc-chhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCch
Q 039126          118 GCSNLMSFP--ELFYNIKELSLDGTAINEL-PSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFP  194 (295)
Q Consensus       118 ~~~~~~~~~--~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~  194 (295)
                      +|.+.+ .+  ..+++|++|++++|.++.+ |..+..+++|+.|++++| .+..+|..+..+++|++|++++|.+. .+|
T Consensus       235 ~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~  311 (390)
T 3o6n_A          235 HNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL-HVE  311 (390)
T ss_dssp             SSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSCCC-CCG
T ss_pred             CCCCcc-cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCcce-ecC
Confidence            433221 11  1234667777777777644 556777777888888776 45556666677788888888887654 567


Q ss_pred             hhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126          195 NELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF  242 (295)
Q Consensus       195 ~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~  242 (295)
                      ..+..+  ++|++|+++++. ++.++.      ..+++|++|++++++
T Consensus       312 ~~~~~l--~~L~~L~L~~N~-i~~~~~------~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          312 RNQPQF--DRLENLYLDHNS-IVTLKL------STHHTLKNLTLSHND  350 (390)
T ss_dssp             GGHHHH--TTCSEEECCSSC-CCCCCC------CTTCCCSEEECCSSC
T ss_pred             cccccc--CcCCEEECCCCc-cceeCc------hhhccCCEEEcCCCC
Confidence            667776  888888888764 566553      577888888888875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=7.4e-21  Score=178.06  Aligned_cols=205  Identities=14%  Similarity=0.106  Sum_probs=149.7

Q ss_pred             CCCCCcCCC--CCCCCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCCC-CCCCCCCcEeecccccccccc
Q 039126            3 GCPFKSLSS--IIRPKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIPS-LSLATNLESLNFQRYTSLLET   78 (295)
Q Consensus         3 ~~~~~~~p~--~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~   78 (295)
                      +..+..++.  +..+++|+.|+|++|.+..++. .++.+++|++|++++|.+.+..+. +..+++|++|++++|......
T Consensus        84 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~  163 (597)
T 3oja_B           84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE  163 (597)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             CCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC
Confidence            344555553  3357788888888888777654 457788888888888876533333 577888888888876544444


Q ss_pred             ccchhcccCCcEEccccCcCCceeC-------------------------------------------------------
Q 039126           79 HSSIRHLNKFVARNLKHCRSLTNLS-------------------------------------------------------  103 (295)
Q Consensus        79 ~~~~~~l~~L~~L~l~~~~~l~~l~-------------------------------------------------------  103 (295)
                      |..+..+++|++|++++|.. +.++                                                       
T Consensus       164 ~~~~~~l~~L~~L~L~~N~l-~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n  242 (597)
T 3oja_B          164 DDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN  242 (597)
T ss_dssp             TTTTTTCTTCCEEECTTSCC-SBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSS
T ss_pred             hhhhhcCCcCcEEECcCCCC-CCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCC
Confidence            45577777777777776532 1111                                                       


Q ss_pred             ------CcccCccccEEeccCCCCCcccCcCC---CCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccC
Q 039126          104 ------TSIHLESLKKLILSGCSNLMSFPELF---YNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKIC  174 (295)
Q Consensus       104 ------~~~~~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~  174 (295)
                            ....+++|+.|++++|.+.+..|..+   .+|++|++++|.++.+|..++.+++|+.|++++| .+..+|..+.
T Consensus       243 ~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~  321 (597)
T 3oja_B          243 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQP  321 (597)
T ss_dssp             CCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHH
T ss_pred             CCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC-CCCccCcccc
Confidence                  01136788889999988766666654   4788999999999999988888999999999998 4667888889


Q ss_pred             CCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccc
Q 039126          175 KLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCS  214 (295)
Q Consensus       175 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~  214 (295)
                      .+++|++|++++|.+.+. +  +..+  ++|++|++++++
T Consensus       322 ~l~~L~~L~L~~N~l~~~-~--~~~~--~~L~~L~l~~N~  356 (597)
T 3oja_B          322 QFDRLENLYLDHNSIVTL-K--LSTH--HTLKNLTLSHND  356 (597)
T ss_dssp             HHTTCSEEECCSSCCCCC-C--CCTT--CCCSEEECCSSC
T ss_pred             cCCCCCEEECCCCCCCCc-C--hhhc--CCCCEEEeeCCC
Confidence            999999999999987654 3  4444  899999999865

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.87  E-value=3e-21  Score=180.89  Aligned_cols=233  Identities=20%  Similarity=0.175  Sum_probs=141.3

Q ss_pred             CCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccc--cccch
Q 039126            5 PFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLE--THSSI   82 (295)
Q Consensus         5 ~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~   82 (295)
                      .+..+|.+..+++|++|++++|.+..+| .+ .+++|+.|++++|...+.. .+..+++|++|++++|.....  .+..+
T Consensus       296 ~~~~l~~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~  372 (606)
T 3vq2_A          296 SIKYLEDVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSD  372 (606)
T ss_dssp             CCCCCCCCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHH
T ss_pred             cchhhhhccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhh
Confidence            4455554445667777777777666666 33 5666666666666433322 344555666666655432211  13344


Q ss_pred             hcccCCcEEccccCcCCceeCCc-------------------------c-cCccccEEeccCCCCCcccCcCC---CCCc
Q 039126           83 RHLNKFVARNLKHCRSLTNLSTS-------------------------I-HLESLKKLILSGCSNLMSFPELF---YNIK  133 (295)
Q Consensus        83 ~~l~~L~~L~l~~~~~l~~l~~~-------------------------~-~~~~L~~L~l~~~~~~~~~~~~~---~~L~  133 (295)
                      ..+++|++|++++|. ++.++..                         + .+++|+.|++++|...+..|..+   .+|+
T Consensus       373 ~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  451 (606)
T 3vq2_A          373 LGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN  451 (606)
T ss_dssp             HCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred             ccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC
Confidence            445555555554432 2222211                         1 25566666666665544444433   3566


Q ss_pred             eEEccCccccc--cchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecc
Q 039126          134 ELSLDGTAINE--LPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAH  211 (295)
Q Consensus       134 ~L~l~~~~i~~--~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~  211 (295)
                      +|++++|.++.  +|..++.+++|+.|++++|...+..|..+.++++|++|++++|.+.+..|..+..+  ++|++|+++
T Consensus       452 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~l~  529 (606)
T 3vq2_A          452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL--YSLSTLDCS  529 (606)
T ss_dssp             EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC--TTCCEEECT
T ss_pred             EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCC--CcCCEEECC
Confidence            77777777764  56667777888888888775555556667788888888888887777777777777  888888888


Q ss_pred             cccccccccccchhhhccCC-cccEEeecCCCCChhhh
Q 039126          212 WCSSLETLSGLSIIFTKISR-NTQSFDFINCFKLHQNV  248 (295)
Q Consensus       212 ~~~~l~~~~~~~~~~~~~~~-~L~~L~l~~c~~l~~~~  248 (295)
                      +|. ++.++..+    ..++ +|++|++++++-..+..
T Consensus       530 ~N~-l~~~p~~~----~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          530 FNR-IETSKGIL----QHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             TSC-CCCEESCG----GGSCTTCCEEECCSCCCCCSST
T ss_pred             CCc-CcccCHhH----hhhcccCcEEEccCCCcccCCc
Confidence            764 66776643    3454 58888888876554443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.87  E-value=9.3e-21  Score=164.76  Aligned_cols=233  Identities=17%  Similarity=0.137  Sum_probs=177.7

Q ss_pred             CCCCCcCCC--CCCCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccc
Q 039126            3 GCPFKSLSS--IIRPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLET   78 (295)
Q Consensus         3 ~~~~~~~p~--~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~   78 (295)
                      +..+..++.  +..+++|++|++++|.++.+ |..++++++|++|++++|.+. .+| .+.  ++|++|++++|. +..+
T Consensus        63 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~-i~~~  138 (332)
T 2ft3_A           63 NNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNR-IRKV  138 (332)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSC-CCCC
T ss_pred             CCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCc-cCcc
Confidence            345666654  34699999999999999987 678899999999999999865 555 333  899999999965 4455


Q ss_pred             c-cchhcccCCcEEccccCcCCc--eeCCcccCccccEEeccCCCCCcccCcCC-CCCceEEccCccccccc-hhhhCCC
Q 039126           79 H-SSIRHLNKFVARNLKHCRSLT--NLSTSIHLESLKKLILSGCSNLMSFPELF-YNIKELSLDGTAINELP-SSIEYLS  153 (295)
Q Consensus        79 ~-~~~~~l~~L~~L~l~~~~~l~--~l~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~i~~~~-~~~~~~~  153 (295)
                      + ..+..+++|+.|++++|..-.  ..+..+...+|+.|++++|.+. .+|..+ .+|++|++++|.++.++ ..+..++
T Consensus       139 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~  217 (332)
T 2ft3_A          139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPETLNELHLDHNKIQAIELEDLLRYS  217 (332)
T ss_dssp             CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCS-SCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCT
T ss_pred             CHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCC-ccCccccCCCCEEECCCCcCCccCHHHhcCCC
Confidence            5 458899999999999965421  3333333228999999998744 466544 48999999999998765 5688899


Q ss_pred             CCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhh---hccC
Q 039126          154 KLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIF---TKIS  230 (295)
Q Consensus       154 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~  230 (295)
                      +|+.|++++|......+..+..+++|++|++++|.+. .+|..+..+  ++|++|+++++ .++.++......   ....
T Consensus       218 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l--~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~  293 (332)
T 2ft3_A          218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL--KLLQVVYLHTN-NITKVGVNDFCPVGFGVKR  293 (332)
T ss_dssp             TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC--TTCCEEECCSS-CCCBCCTTSSSCSSCCSSS
T ss_pred             CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC--ccCCEEECCCC-CCCccChhHcccccccccc
Confidence            9999999998554444557889999999999998765 788888887  99999999986 467766532110   1125


Q ss_pred             CcccEEeecCCCCC
Q 039126          231 RNTQSFDFINCFKL  244 (295)
Q Consensus       231 ~~L~~L~l~~c~~l  244 (295)
                      ++|+.+++.+++..
T Consensus       294 ~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          294 AYYNGISLFNNPVP  307 (332)
T ss_dssp             CCBSEEECCSSSSC
T ss_pred             ccccceEeecCccc
Confidence            77899999998743

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.87  E-value=6.6e-21  Score=172.71  Aligned_cols=175  Identities=17%  Similarity=0.168  Sum_probs=101.5

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccch
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSI   82 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~   82 (295)
                      +..+.++|.+..+++|++|++++|.++.++  ++.+++|++|++++|.+.+ ++ +..+++|++|++++| .++.++  +
T Consensus        51 ~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~-~~~l~~L~~L~L~~N-~l~~l~--~  123 (457)
T 3bz5_A           51 NSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD-VTPLTKLTYLNCDTN-KLTKLD--V  123 (457)
T ss_dssp             SSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECCSS-CCSCCC--C
T ss_pred             CCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee-cCCCCcCCEEECCCC-cCCeec--C
Confidence            456666776667888888888888888775  7788888888888887654 33 777778888888775 334443  5


Q ss_pred             hcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCccc---------------------C-cCCCCCceEEccCc
Q 039126           83 RHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSF---------------------P-ELFYNIKELSLDGT  140 (295)
Q Consensus        83 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~---------------------~-~~~~~L~~L~l~~~  140 (295)
                      ..+++|++|++++|. ++.++ ...+++|+.|++++|...+.+                     | ..+.+|++|++++|
T Consensus       124 ~~l~~L~~L~l~~N~-l~~l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N  201 (457)
T 3bz5_A          124 SQNPLLTYLNCARNT-LTEID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTN  201 (457)
T ss_dssp             TTCTTCCEEECTTSC-CSCCC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSS
T ss_pred             CCCCcCCEEECCCCc-cceec-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccCCCCCEEECcCC
Confidence            666777777776643 33332 112444555555444333332                     2 11223444444444


Q ss_pred             cccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCC
Q 039126          141 AINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLE  191 (295)
Q Consensus       141 ~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~  191 (295)
                      .++.++  ++.+++|+.|++++|. +..+|  ++.+++|++|++++|.+.+
T Consensus       202 ~l~~~~--l~~l~~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          202 NITKLD--LNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSC
T ss_pred             cCCeec--cccCCCCCEEECcCCc-ccccC--ccccCCCCEEEeeCCcCCC
Confidence            444432  4445555555555552 33344  4555566666666655444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.87  E-value=6.5e-21  Score=184.00  Aligned_cols=215  Identities=13%  Similarity=0.161  Sum_probs=134.9

Q ss_pred             CCCCceeEecCCCCccccch--hhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccC-CcE
Q 039126           14 RPKNLVSPEIPRNSIKQLWK--VVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNK-FVA   90 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~   90 (295)
                      .+++|+.|++++|.+..+|.  .++.+++|+.|++++|.+. .+|.+..+++|++|++++|.. ..+|..+..+++ |+.
T Consensus       546 ~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l-~~lp~~l~~l~~~L~~  623 (876)
T 4ecn_A          546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQI-EEIPEDFCAFTDQVEG  623 (876)
T ss_dssp             TTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCC-SCCCTTSCEECTTCCE
T ss_pred             ccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCcc-ccchHHHhhccccCCE
Confidence            34567777777777777776  7777778888888887765 667777788888888887544 377777788887 888


Q ss_pred             EccccCcCCceeCCccc---CccccEEeccCCCCCcccCcCC--------CCCceEEccCccccccchhhh-CCCCCcEE
Q 039126           91 RNLKHCRSLTNLSTSIH---LESLKKLILSGCSNLMSFPELF--------YNIKELSLDGTAINELPSSIE-YLSKLVIL  158 (295)
Q Consensus        91 L~l~~~~~l~~l~~~~~---~~~L~~L~l~~~~~~~~~~~~~--------~~L~~L~l~~~~i~~~~~~~~-~~~~L~~L  158 (295)
                      |++++|. ++.+|..+.   .++|+.|++++|.+.+.+|...        .+|+.|++++|.++.+|..+. .+++|+.|
T Consensus       624 L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L  702 (876)
T 4ecn_A          624 LGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI  702 (876)
T ss_dssp             EECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEE
T ss_pred             EECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEE
Confidence            8888854 446665443   2347777887776655444211        256677777777776666543 56667777


Q ss_pred             ecCCCcCCcCcccccCC--------CCCCCeeeccCCCCCCCchhhhh--ccCCCCcceeecccccccccccccchhhhc
Q 039126          159 NLGNSSRLEGLPSKICK--------LKSLQHLNLSCCSNLESFPNELR--NLFPCDLYDIEAHWCSSLETLSGLSIIFTK  228 (295)
Q Consensus       159 ~l~~~~~~~~~p~~l~~--------l~~L~~L~l~~~~~~~~~~~~l~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  228 (295)
                      ++++|. +..+|..+..        +++|+.|++++|.+. .+|..+.  .+  ++|+.|+++++. ++.++...    .
T Consensus       703 ~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l--~~L~~L~Ls~N~-L~~lp~~l----~  773 (876)
T 4ecn_A          703 ILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTL--PYLSNMDVSYNC-FSSFPTQP----L  773 (876)
T ss_dssp             ECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTC--TTCCEEECCSSC-CSSCCCGG----G
T ss_pred             ECCCCc-CCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccC--CCcCEEEeCCCC-CCccchhh----h
Confidence            776663 3355544332        126666666665544 5555554  44  666666666543 34444322    3


Q ss_pred             cCCcccEEeecC
Q 039126          229 ISRNTQSFDFIN  240 (295)
Q Consensus       229 ~~~~L~~L~l~~  240 (295)
                      .+++|+.|++++
T Consensus       774 ~L~~L~~L~Ls~  785 (876)
T 4ecn_A          774 NSSQLKAFGIRH  785 (876)
T ss_dssp             GCTTCCEEECCC
T ss_pred             cCCCCCEEECCC
Confidence            555555555554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.87  E-value=1.2e-21  Score=183.69  Aligned_cols=201  Identities=19%  Similarity=0.180  Sum_probs=164.9

Q ss_pred             CCCCCceeEecCCCCcccc---chhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccc-cchhcccCC
Q 039126           13 IRPKNLVSPEIPRNSIKQL---WKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETH-SSIRHLNKF   88 (295)
Q Consensus        13 ~~~~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L   88 (295)
                      ..+++|+.|++++|.+..+   +..+..+++|++|++++|.+.+....+..+++|++|++++|...+..+ ..+..+++|
T Consensus       347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  426 (606)
T 3vq2_A          347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL  426 (606)
T ss_dssp             CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred             ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence            3578888888888888765   678899999999999999865433478999999999999976655555 468899999


Q ss_pred             cEEccccCcCCceeCCcc-cCccccEEeccCCCCCcc-cCcCC---CCCceEEccCcccccc-chhhhCCCCCcEEecCC
Q 039126           89 VARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMS-FPELF---YNIKELSLDGTAINEL-PSSIEYLSKLVILNLGN  162 (295)
Q Consensus        89 ~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~-~~~~~---~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~  162 (295)
                      ++|++++|......+..+ .+++|+.|++++|.+.+. +|..+   .+|++|++++|.++.+ |..++.+++|+.|++++
T Consensus       427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  506 (606)
T 3vq2_A          427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH  506 (606)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence            999999976555555555 489999999999987663 56554   5788999999999865 56788999999999999


Q ss_pred             CcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccc
Q 039126          163 SSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSS  215 (295)
Q Consensus       163 ~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~  215 (295)
                      |......|..+.++++|++|++++|.+. .+|..+..+ |.+|++|++++++-
T Consensus       507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l-~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          507 NNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHF-PKSLAFFNLTNNSV  557 (606)
T ss_dssp             SCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGS-CTTCCEEECCSCCC
T ss_pred             CcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhh-cccCcEEEccCCCc
Confidence            9766666888999999999999998865 788877775 34799999998764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=2e-21  Score=167.03  Aligned_cols=209  Identities=22%  Similarity=0.249  Sum_probs=168.6

Q ss_pred             CCCCCcCCCC--CCCCCceeEecCCCCcccc---chhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccc
Q 039126            3 GCPFKSLSSI--IRPKNLVSPEIPRNSIKQL---WKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLL   76 (295)
Q Consensus         3 ~~~~~~~p~~--~~~~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~   76 (295)
                      +..++.+|..  ..+++|++|++++|.+..+   +..+..+++|++|++++|.+. .+| .+..+++|++|++++|. +.
T Consensus        37 ~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~-l~  114 (306)
T 2z66_A           37 SNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN-LK  114 (306)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSE-EE
T ss_pred             CCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCc-cc
Confidence            4567778864  3699999999999998855   677788999999999999865 455 68899999999999964 44


Q ss_pred             ccc--cchhcccCCcEEccccCcCCceeCCcc-cCccccEEeccCCCCCc-ccCcCC---CCCceEEccCcccccc-chh
Q 039126           77 ETH--SSIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLM-SFPELF---YNIKELSLDGTAINEL-PSS  148 (295)
Q Consensus        77 ~~~--~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~-~~~~~~---~~L~~L~l~~~~i~~~-~~~  148 (295)
                      .++  ..+..+++|++|++++|......+..+ .+++|+.|++++|.+.+ .+|..+   .+|++|++++|.++.+ |..
T Consensus       115 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  194 (306)
T 2z66_A          115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA  194 (306)
T ss_dssp             SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred             ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH
Confidence            444  368899999999999975443444434 48999999999997655 355544   4788999999999976 667


Q ss_pred             hhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccc
Q 039126          149 IEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCS  214 (295)
Q Consensus       149 ~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~  214 (295)
                      +..+++|+.|++++|......+..+..+++|++|++++|.+.+..+..+..+ |++|++|++++++
T Consensus       195 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~~~L~~L~L~~N~  259 (306)
T 2z66_A          195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF-PSSLAFLNLTQND  259 (306)
T ss_dssp             TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC-CTTCCEEECTTCC
T ss_pred             hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh-hccCCEEEccCCC
Confidence            8899999999999996544445578899999999999999988888887774 3599999999865

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.87  E-value=1.4e-20  Score=169.77  Aligned_cols=208  Identities=19%  Similarity=0.219  Sum_probs=171.6

Q ss_pred             CCCCCcCCC--CCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccc
Q 039126            3 GCPFKSLSS--IIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLET   78 (295)
Q Consensus         3 ~~~~~~~p~--~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~   78 (295)
                      +..+..++.  +..+++|+.|+|++|.+..++ ..+.++++|++|++++|.+....+ .+..+++|++|++++|. ++.+
T Consensus        73 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~  151 (440)
T 3zyj_A           73 ENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESI  151 (440)
T ss_dssp             SCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEE
T ss_pred             CCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-cccc
Confidence            345555552  336999999999999999876 678999999999999998765444 48999999999999965 4555


Q ss_pred             c-cchhcccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCCcccCc--CCCCCceEEccCcccccc-chhhhCC
Q 039126           79 H-SSIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE--LFYNIKELSLDGTAINEL-PSSIEYL  152 (295)
Q Consensus        79 ~-~~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~-~~~~~~~  152 (295)
                      + ..+..+++|+.|++++|..+..++...  .+++|+.|++++|. +..+|.  .+.+|++|++++|.++.+ +..+..+
T Consensus       152 ~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  230 (440)
T 3zyj_A          152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL  230 (440)
T ss_dssp             CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTC
T ss_pred             CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcccCEEECCCCccCccChhhhccC
Confidence            5 468899999999999988888888754  48999999999986 446664  344889999999999966 6678899


Q ss_pred             CCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccc
Q 039126          153 SKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCS  214 (295)
Q Consensus       153 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~  214 (295)
                      ++|+.|++++|......+..+.++++|+.|++++|.+.+..+..+..+  ++|+.|++++++
T Consensus       231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~Np  290 (440)
T 3zyj_A          231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL--HHLERIHLHHNP  290 (440)
T ss_dssp             TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC--TTCCEEECCSSC
T ss_pred             ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc--cCCCEEEcCCCC
Confidence            999999999996555556789999999999999998876666666777  999999999754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=1.7e-20  Score=169.93  Aligned_cols=207  Identities=20%  Similarity=0.203  Sum_probs=171.0

Q ss_pred             CCCCcCC-CCC-CCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccc
Q 039126            4 CPFKSLS-SII-RPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETH   79 (295)
Q Consensus         4 ~~~~~~p-~~~-~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~   79 (295)
                      ..+..++ ..+ .+++|+.|+|++|.+..++ ..+.++++|++|++++|.+....+ .+..+++|++|++++|. ++.++
T Consensus        85 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~  163 (452)
T 3zyi_A           85 NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIP  163 (452)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEEC
T ss_pred             CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeC
Confidence            4455553 333 6999999999999999876 678999999999999999765555 38999999999999965 45555


Q ss_pred             -cchhcccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCCcccCc--CCCCCceEEccCcccccc-chhhhCCC
Q 039126           80 -SSIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE--LFYNIKELSLDGTAINEL-PSSIEYLS  153 (295)
Q Consensus        80 -~~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~-~~~~~~~~  153 (295)
                       ..+..+++|+.|++++|..++.++...  .+++|+.|++++|.+ ..+|.  .+.+|++|++++|.++.+ |..+..++
T Consensus       164 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  242 (452)
T 3zyi_A          164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLS  242 (452)
T ss_dssp             TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-SSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCT
T ss_pred             HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc-cccccccccccccEEECcCCcCcccCcccccCcc
Confidence             468899999999999999999988754  489999999999864 45554  345899999999999966 66789999


Q ss_pred             CCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccc
Q 039126          154 KLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCS  214 (295)
Q Consensus       154 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~  214 (295)
                      +|+.|++++|......|..+.++++|+.|++++|.+.+..+..+..+  ++|+.|++++++
T Consensus       243 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~Np  301 (452)
T 3zyi_A          243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL--RYLVELHLHHNP  301 (452)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC--TTCCEEECCSSC
T ss_pred             CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc--cCCCEEEccCCC
Confidence            99999999996655567789999999999999998776555666666  999999999754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.86  E-value=3.4e-21  Score=177.31  Aligned_cols=114  Identities=16%  Similarity=0.174  Sum_probs=70.5

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS   80 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~   80 (295)
                      +..++.+|..+. ++|++|++++|.+..++ ..+.++++|++|++++|.+.+..| .+..+++|++|++++| .++.+|.
T Consensus         9 ~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~   86 (520)
T 2z7x_B            9 KNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISC   86 (520)
T ss_dssp             TSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEEC
T ss_pred             CCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCc
Confidence            445666665443 77777777777777665 466777777777777777665555 4777777777777774 3445554


Q ss_pred             chhcccCCcEEccccCcCCc-eeCCcc-cCccccEEeccCCC
Q 039126           81 SIRHLNKFVARNLKHCRSLT-NLSTSI-HLESLKKLILSGCS  120 (295)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~l~-~l~~~~-~~~~L~~L~l~~~~  120 (295)
                      .  .+++|++|++++|.... .+|..+ .+++|++|++++|.
T Consensus        87 ~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~  126 (520)
T 2z7x_B           87 H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH  126 (520)
T ss_dssp             C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred             c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc
Confidence            4  66677777776654322 233333 25555555555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.86  E-value=1e-20  Score=174.11  Aligned_cols=93  Identities=17%  Similarity=0.159  Sum_probs=74.0

Q ss_pred             CCCCCcCCC--CCCCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeecccccccc-cc
Q 039126            3 GCPFKSLSS--IIRPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLL-ET   78 (295)
Q Consensus         3 ~~~~~~~p~--~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~   78 (295)
                      +..+..++.  +..+++|++|++++|.++.+ |..++++++|++|++++|.+. .+|.. .+++|++|++++|.... .+
T Consensus        30 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~L~~N~l~~~~~  107 (520)
T 2z7x_B           30 QNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH-PTVNLKHLDLSFNAFDALPI  107 (520)
T ss_dssp             SSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC-CCCCCSEEECCSSCCSSCCC
T ss_pred             CCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc-ccCCccEEeccCCccccccc
Confidence            345566653  34689999999999999887 678899999999999999865 66755 89999999999976554 46


Q ss_pred             ccchhcccCCcEEccccCc
Q 039126           79 HSSIRHLNKFVARNLKHCR   97 (295)
Q Consensus        79 ~~~~~~l~~L~~L~l~~~~   97 (295)
                      |..++.+++|++|++++|.
T Consensus       108 p~~~~~l~~L~~L~L~~n~  126 (520)
T 2z7x_B          108 CKEFGNMSQLKFLGLSTTH  126 (520)
T ss_dssp             CGGGGGCTTCCEEEEEESS
T ss_pred             hhhhccCCcceEEEecCcc
Confidence            7788889999988888754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.86  E-value=1.9e-20  Score=169.68  Aligned_cols=198  Identities=16%  Similarity=0.185  Sum_probs=103.4

Q ss_pred             CCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccc-------------
Q 039126            5 PFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQR-------------   71 (295)
Q Consensus         5 ~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~-------------   71 (295)
                      .++.+| +..+++|++|++++|.++.++  ++.+++|++|++++|.+.+ ++ +..+++|++|++++             
T Consensus        75 ~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~l~l~~l~~  149 (457)
T 3bz5_A           75 NITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTEIDVSHNTQ  149 (457)
T ss_dssp             CCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSCCCCTTCTT
T ss_pred             cCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccceeccccCCc
Confidence            344443 334555666666666555543  4555555555555555433 22 44444444444444             


Q ss_pred             --------cccccccccchhcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccCcCCCCCceEEccCcccc
Q 039126           72 --------YTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAIN  143 (295)
Q Consensus        72 --------~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~  143 (295)
                              |..++.+  .+..+++|+.|++++| .++.++ ...+++|+.|++++|.+.+.-...+.+|++|++++|.++
T Consensus       150 L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~-l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~  225 (457)
T 3bz5_A          150 LTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD-VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLT  225 (457)
T ss_dssp             CCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC-CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCS
T ss_pred             CCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec-cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCccc
Confidence                    4333333  2445566666666653 344444 223667777777777644332233456778888888877


Q ss_pred             ccchhhhCCCCCcEEecCCCcCCcCcc-cccCCCC-------CCCeeeccCCCCCCCchhhhhccCCCCcceeecccccc
Q 039126          144 ELPSSIEYLSKLVILNLGNSSRLEGLP-SKICKLK-------SLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSS  215 (295)
Q Consensus       144 ~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~l~~l~-------~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~  215 (295)
                      .+|  ++.+++|+.|++++|. +..+| ..+.++.       +|+.|++++|...+.+|.  ..+  ++|+.|++++|..
T Consensus       226 ~ip--~~~l~~L~~L~l~~N~-l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--~~l--~~L~~L~Ls~n~~  298 (457)
T 3bz5_A          226 EID--VTPLTQLTYFDCSVNP-LTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--EGC--RKIKELDVTHNTQ  298 (457)
T ss_dssp             CCC--CTTCTTCSEEECCSSC-CSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--TTC--TTCCCCCCTTCTT
T ss_pred             ccC--ccccCCCCEEEeeCCc-CCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccc--ccc--ccCCEEECCCCcc
Confidence            776  6677778888777774 33332 2222222       334444444444444442  222  5555555555543


Q ss_pred             ccc
Q 039126          216 LET  218 (295)
Q Consensus       216 l~~  218 (295)
                      ++.
T Consensus       299 l~~  301 (457)
T 3bz5_A          299 LYL  301 (457)
T ss_dssp             CCE
T ss_pred             cce
Confidence            333

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.85  E-value=4.1e-20  Score=171.78  Aligned_cols=113  Identities=18%  Similarity=0.204  Sum_probs=71.3

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS   80 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~   80 (295)
                      +..++.+|... .+++++|++++|.+..++ ..++++++|++|++++|.+.+..| .+..+++|++|++++|. ++.+|.
T Consensus        40 ~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~  117 (562)
T 3a79_B           40 NRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISC  117 (562)
T ss_dssp             TSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECS
T ss_pred             CCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCc
Confidence            34566666533 367788888888777765 467777888888888877665555 47777777777777753 445654


Q ss_pred             chhcccCCcEEccccCcCCceeC--Ccc-cCccccEEeccCCC
Q 039126           81 SIRHLNKFVARNLKHCRSLTNLS--TSI-HLESLKKLILSGCS  120 (295)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~l~~l~--~~~-~~~~L~~L~l~~~~  120 (295)
                      .  .+++|++|++++|. ++.++  ..+ .+++|++|++++|.
T Consensus       118 ~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~  157 (562)
T 3a79_B          118 C--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK  157 (562)
T ss_dssp             C--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred             c--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc
Confidence            4  66677777776643 33332  222 25555555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.85  E-value=5.2e-20  Score=167.30  Aligned_cols=222  Identities=18%  Similarity=0.252  Sum_probs=159.0

Q ss_pred             CCCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccc
Q 039126            2 HGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSS   81 (295)
Q Consensus         2 ~~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~   81 (295)
                      .+..+..+|.+..+++|++|++++|.+..++. ++.+++|++|++++|.+.+..+ +..+++|++|++++| .++.++. 
T Consensus        54 ~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-  129 (466)
T 1o6v_A           54 DRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDP-  129 (466)
T ss_dssp             CSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-
T ss_pred             CCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-CCCCChH-
Confidence            45667778877779999999999999998877 8899999999999998755444 888999999999986 4555553 


Q ss_pred             hhcccCCcEEccccCcCCceeCCc---------------------ccCccccEEeccCCCCCcccC--cCCCCCceEEcc
Q 039126           82 IRHLNKFVARNLKHCRSLTNLSTS---------------------IHLESLKKLILSGCSNLMSFP--ELFYNIKELSLD  138 (295)
Q Consensus        82 ~~~l~~L~~L~l~~~~~l~~l~~~---------------------~~~~~L~~L~l~~~~~~~~~~--~~~~~L~~L~l~  138 (295)
                      +..+++|++|++++|. +..++..                     ..+++|+.|++++|... .++  ..+.+|++|+++
T Consensus       130 ~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~  207 (466)
T 1o6v_A          130 LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DISVLAKLTNLESLIAT  207 (466)
T ss_dssp             GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECC
T ss_pred             HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC-CChhhccCCCCCEEEec
Confidence            7788888888888753 3333321                     13566777777776532 222  234467777777


Q ss_pred             CccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccccccc
Q 039126          139 GTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLET  218 (295)
Q Consensus       139 ~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~  218 (295)
                      +|.+..++. ++.+++|+.|++++|. +..++ .+..+++|++|++++|.+.+..+  +..+  ++|++|++++|. ++.
T Consensus       208 ~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l--~~L~~L~l~~n~-l~~  279 (466)
T 1o6v_A          208 NNQISDITP-LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLAP--LSGL--TKLTELKLGANQ-ISN  279 (466)
T ss_dssp             SSCCCCCGG-GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTC--TTCSEEECCSSC-CCC
T ss_pred             CCccccccc-ccccCCCCEEECCCCC-cccch-hhhcCCCCCEEECCCCccccchh--hhcC--CCCCEEECCCCc-cCc
Confidence            777776554 5667788888888774 44444 46778888888888877655443  5555  888888888864 455


Q ss_pred             ccccchhhhccCCcccEEeecCCC
Q 039126          219 LSGLSIIFTKISRNTQSFDFINCF  242 (295)
Q Consensus       219 ~~~~~~~~~~~~~~L~~L~l~~c~  242 (295)
                      ++.     ...+++|++|++++|.
T Consensus       280 ~~~-----~~~l~~L~~L~L~~n~  298 (466)
T 1o6v_A          280 ISP-----LAGLTALTNLELNENQ  298 (466)
T ss_dssp             CGG-----GTTCTTCSEEECCSSC
T ss_pred             ccc-----ccCCCccCeEEcCCCc
Confidence            543     2578889999998874

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.85  E-value=1.8e-20  Score=173.48  Aligned_cols=85  Identities=16%  Similarity=0.092  Sum_probs=44.0

Q ss_pred             CCCCCcEEecCCCcCCcCcc---cccCCCCCCCeeeccCCCCCCCch--hhhhccCCCCcceeecccccccccccccchh
Q 039126          151 YLSKLVILNLGNSSRLEGLP---SKICKLKSLQHLNLSCCSNLESFP--NELRNLFPCDLYDIEAHWCSSLETLSGLSII  225 (295)
Q Consensus       151 ~~~~L~~L~l~~~~~~~~~p---~~l~~l~~L~~L~l~~~~~~~~~~--~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~  225 (295)
                      .+++|+.|++++|...+.+|   ..++.+++|++|++++|.+.+..+  ..+..+  ++|++|++++| .++.++...  
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l--~~L~~L~Ls~N-~l~~lp~~~--  406 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL--KNLTSLDISRN-TFHPMPDSC--  406 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC--TTCCEEECTTC-CCCCCCSCC--
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcC--CCCCEEECCCC-CCccCChhh--
Confidence            45556666666654333332   224555666666666655433211  234444  66666666665 345555432  


Q ss_pred             hhccCCcccEEeecCCC
Q 039126          226 FTKISRNTQSFDFINCF  242 (295)
Q Consensus       226 ~~~~~~~L~~L~l~~c~  242 (295)
                        ..+++|++|++++|.
T Consensus       407 --~~~~~L~~L~Ls~N~  421 (549)
T 2z81_A          407 --QWPEKMRFLNLSSTG  421 (549)
T ss_dssp             --CCCTTCCEEECTTSC
T ss_pred             --cccccccEEECCCCC
Confidence              345566666666553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.85  E-value=5.9e-20  Score=155.55  Aligned_cols=116  Identities=16%  Similarity=0.168  Sum_probs=70.8

Q ss_pred             CCCCcCCCCCCCCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc
Q 039126            4 CPFKSLSSIIRPKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS   81 (295)
Q Consensus         4 ~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~   81 (295)
                      ..+.++|..+ .+++++|++++|.++.++. .+.++++|++|++++|.+.+..+ .+..+++|++|++++|......+..
T Consensus        17 ~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (276)
T 2z62_A           17 LNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA   95 (276)
T ss_dssp             SCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             CCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence            3445555433 3567777777777777654 56777777777777776654444 4777777777777775443333455


Q ss_pred             hhcccCCcEEccccCcCCceeCC-cc-cCccccEEeccCCCC
Q 039126           82 IRHLNKFVARNLKHCRSLTNLST-SI-HLESLKKLILSGCSN  121 (295)
Q Consensus        82 ~~~l~~L~~L~l~~~~~l~~l~~-~~-~~~~L~~L~l~~~~~  121 (295)
                      +..+++|++|++++|. +..++. .+ .+++|+.|++++|.+
T Consensus        96 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l  136 (276)
T 2z62_A           96 FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLI  136 (276)
T ss_dssp             TTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred             hcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCcc
Confidence            6677777777777643 333332 12 255566666655543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.84  E-value=2.5e-20  Score=173.23  Aligned_cols=225  Identities=17%  Similarity=0.112  Sum_probs=162.9

Q ss_pred             CCCceeEecCCCCccccchhhcC--------------------CCCCcEEecCCCCCCCcCCCCCCCCCCcEeecccccc
Q 039126           15 PKNLVSPEIPRNSIKQLWKVVQR--------------------LVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTS   74 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~~~~~~--------------------l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~   74 (295)
                      +++|+.|++++|.+.++|..+..                    +++|+.|++.+|.+.+..+. ..+++|++|++++|..
T Consensus       281 l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l  359 (570)
T 2z63_A          281 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGL  359 (570)
T ss_dssp             GTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCC
T ss_pred             cCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCcc
Confidence            45555555555555555544444                    44455555555443332222 6678888888888653


Q ss_pred             cccc--ccchhcccCCcEEccccCcCCceeCCcc-cCccccEEeccCCCCCcccC----cCCCCCceEEccCccccc-cc
Q 039126           75 LLET--HSSIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFP----ELFYNIKELSLDGTAINE-LP  146 (295)
Q Consensus        75 ~~~~--~~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~i~~-~~  146 (295)
                      ....  +..+..+++|++|++++|. +..++..+ .+++|+.|++++|...+..+    ..+.+|++|++++|.+.. .+
T Consensus       360 ~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  438 (570)
T 2z63_A          360 SFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN  438 (570)
T ss_dssp             BEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT
T ss_pred             CccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch
Confidence            3322  5667889999999999864 44444434 48999999999987554433    234588999999999884 56


Q ss_pred             hhhhCCCCCcEEecCCCcCC-cCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchh
Q 039126          147 SSIEYLSKLVILNLGNSSRL-EGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSII  225 (295)
Q Consensus       147 ~~~~~~~~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~  225 (295)
                      ..+..+++|+.|++++|... ..+|..+..+++|++|++++|.+.+..|..+..+  ++|++|++++| .++.++...  
T Consensus       439 ~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n-~l~~~~~~~--  513 (570)
T 2z63_A          439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL--SSLQVLNMASN-QLKSVPDGI--  513 (570)
T ss_dssp             TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC--TTCCEEECCSS-CCSCCCTTT--
T ss_pred             hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcc--cCCCEEeCCCC-cCCCCCHHH--
Confidence            67889999999999999654 4688889999999999999999888778888887  99999999997 466665432  


Q ss_pred             hhccCCcccEEeecCCCCChhh
Q 039126          226 FTKISRNTQSFDFINCFKLHQN  247 (295)
Q Consensus       226 ~~~~~~~L~~L~l~~c~~l~~~  247 (295)
                       ...+++|++|++++++--...
T Consensus       514 -~~~l~~L~~L~l~~N~~~~~~  534 (570)
T 2z63_A          514 -FDRLTSLQKIWLHTNPWDCSC  534 (570)
T ss_dssp             -TTTCTTCCEEECCSSCBCCCT
T ss_pred             -hhcccCCcEEEecCCcccCCC
Confidence             157899999999998654443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.84  E-value=5.6e-20  Score=178.56  Aligned_cols=169  Identities=15%  Similarity=0.141  Sum_probs=124.3

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcC-C-CCCCCCCCcEeeccccccccccc
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEI-P-SLSLATNLESLNFQRYTSLLETH   79 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~-~-~~~~l~~L~~L~l~~~~~~~~~~   79 (295)
                      +..++.+|.  .++++++|+|++|.++.+ +..++++++|++|++++|...+.+ | .+..+++|++|++++|......|
T Consensus        13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p   90 (844)
T 3j0a_A           13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP   90 (844)
T ss_dssp             CCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred             CCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence            456788887  678999999999999876 577899999999999999777776 4 58999999999999976666667


Q ss_pred             cchhcccCCcEEccccCcCCceeCCc--c-cCccccEEeccCCCCCcccC-c---CCCCCceEEccCccccc-cchhhhC
Q 039126           80 SSIRHLNKFVARNLKHCRSLTNLSTS--I-HLESLKKLILSGCSNLMSFP-E---LFYNIKELSLDGTAINE-LPSSIEY  151 (295)
Q Consensus        80 ~~~~~l~~L~~L~l~~~~~l~~l~~~--~-~~~~L~~L~l~~~~~~~~~~-~---~~~~L~~L~l~~~~i~~-~~~~~~~  151 (295)
                      ..+..+++|++|++++|......+..  + .+++|++|++++|.+.+..+ .   .+.+|++|++++|.++. .+..+..
T Consensus        91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~  170 (844)
T 3j0a_A           91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP  170 (844)
T ss_dssp             TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred             hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence            78999999999999997555444443  2 48899999999987655433 2   34577889999888763 3444444


Q ss_pred             C--CCCcEEecCCCcCCcCccccc
Q 039126          152 L--SKLVILNLGNSSRLEGLPSKI  173 (295)
Q Consensus       152 ~--~~L~~L~l~~~~~~~~~p~~l  173 (295)
                      +  ++|+.|++++|......|..+
T Consensus       171 l~~~~L~~L~L~~n~l~~~~~~~~  194 (844)
T 3j0a_A          171 LQGKTLSFFSLAANSLYSRVSVDW  194 (844)
T ss_dssp             HHHCSSCCCEECCSBSCCCCCCCC
T ss_pred             ccCCccceEECCCCccccccccch
Confidence            3  455555555554333333333

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.84  E-value=1.7e-19  Score=164.01  Aligned_cols=222  Identities=22%  Similarity=0.310  Sum_probs=130.2

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccc---
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETH---   79 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---   79 (295)
                      ++.+..+|.+..+++|++|++++|.+..++. ++.+++|++|++++|.+. .++.+..+++|++|++++|.. ..++   
T Consensus        77 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~  153 (466)
T 1o6v_A           77 NNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQIT-DIDPLKNLTNLNRLELSSNTI-SDISALS  153 (466)
T ss_dssp             SSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGGGTTCTTCSEEEEEEEEE-CCCGGGT
T ss_pred             CCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCC-CChHHcCCCCCCEEECCCCcc-CCChhhc
Confidence            4566667765568888888888888887766 888888888888888754 344477788888888877532 2221   


Q ss_pred             -----------------cchhcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccC-cCCCCCceEEccCc-
Q 039126           80 -----------------SSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFP-ELFYNIKELSLDGT-  140 (295)
Q Consensus        80 -----------------~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~-  140 (295)
                                       ..+..+++|+.|++++|. ++.++....+++|++|++++|...+..+ ..+.+|++|++++| 
T Consensus       154 ~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~  232 (466)
T 1o6v_A          154 GLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ  232 (466)
T ss_dssp             TCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             cCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCC
Confidence                             124556677777777643 4444433346666666666665433222 12234444555444 


Q ss_pred             ---------------------cccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhc
Q 039126          141 ---------------------AINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRN  199 (295)
Q Consensus       141 ---------------------~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~  199 (295)
                                           .++.++. +..+++|+.|++++|. +..++. +..+++|++|++++|.+.+..+  +..
T Consensus       233 l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~  307 (466)
T 1o6v_A          233 LKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDISP--ISN  307 (466)
T ss_dssp             CCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGG
T ss_pred             cccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCchh--hcC
Confidence                                 4443333 4445555555555552 333333 5556666666666655443222  444


Q ss_pred             cCCCCcceeecccccccccccccchhhhccCCcccEEeecCC
Q 039126          200 LFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINC  241 (295)
Q Consensus       200 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c  241 (295)
                      +  ++|++|++++|. ++.++.     ...+++|++|++++|
T Consensus       308 l--~~L~~L~L~~n~-l~~~~~-----~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          308 L--KNLTYLTLYFNN-ISDISP-----VSSLTKLQRLFFYNN  341 (466)
T ss_dssp             C--TTCSEEECCSSC-CSCCGG-----GGGCTTCCEEECCSS
T ss_pred             C--CCCCEEECcCCc-CCCchh-----hccCccCCEeECCCC
Confidence            4  666777776653 343332     146677777777776

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.84  E-value=7.5e-20  Score=173.62  Aligned_cols=159  Identities=18%  Similarity=0.198  Sum_probs=103.7

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCCC-CCCCCCCcEeecccccccccccc
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIPS-LSLATNLESLNFQRYTSLLETHS   80 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~   80 (295)
                      +..++.+|..+ .+++++|++++|.++.++. .++++++|++|++++|.+.+..|. +..+++|++|++++| .+..+|.
T Consensus        13 ~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~   90 (680)
T 1ziw_A           13 HLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSD   90 (680)
T ss_dssp             SSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCT
T ss_pred             CCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccCh
Confidence            34566677543 3678888888888877664 467788888888888876665553 677788888888775 4445554


Q ss_pred             -chhcccCCcEEccccCcCCceeCC-cc-cCccccEEeccCCCCCcccCcC---CCCCceEEccCccccccchh-h--hC
Q 039126           81 -SIRHLNKFVARNLKHCRSLTNLST-SI-HLESLKKLILSGCSNLMSFPEL---FYNIKELSLDGTAINELPSS-I--EY  151 (295)
Q Consensus        81 -~~~~l~~L~~L~l~~~~~l~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~i~~~~~~-~--~~  151 (295)
                       .+..+++|++|++++|. ++.++. .+ .+++|++|++++|...+..|..   +.+|++|++++|.++.++.. +  ..
T Consensus        91 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  169 (680)
T 1ziw_A           91 KTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA  169 (680)
T ss_dssp             TTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred             hhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccc
Confidence             47777888888887753 344443 23 3777777777777655544443   33566777777777655432 2  23


Q ss_pred             CCCCcEEecCCCc
Q 039126          152 LSKLVILNLGNSS  164 (295)
Q Consensus       152 ~~~L~~L~l~~~~  164 (295)
                      +++|+.|++++|.
T Consensus       170 ~~~L~~L~L~~n~  182 (680)
T 1ziw_A          170 NSSLKKLELSSNQ  182 (680)
T ss_dssp             TCEESEEECTTCC
T ss_pred             cccccEEECCCCc
Confidence            4566666666663

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.84  E-value=1.1e-20  Score=162.88  Aligned_cols=212  Identities=17%  Similarity=0.181  Sum_probs=166.6

Q ss_pred             ceeEecCCCCccc--cchhhc-------CCCCCcEEecCCCCCCCcCCC-C--CCCCCCcEeeccccccccccccchhcc
Q 039126           18 LVSPEIPRNSIKQ--LWKVVQ-------RLVNLKSINLNHSEHLTEIPS-L--SLATNLESLNFQRYTSLLETHSSIRHL   85 (295)
Q Consensus        18 L~~L~l~~~~~~~--l~~~~~-------~l~~L~~L~L~~~~~~~~~~~-~--~~l~~L~~L~l~~~~~~~~~~~~~~~l   85 (295)
                      ++.|++++|.+..  ++..+.       .+++|++|++++|.+.+..|. +  ..+++|++|++++|. +...|..+..+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHH
Confidence            7788888888753  555554       799999999999999888884 4  899999999999965 44447777777


Q ss_pred             -----cCCcEEccccCcCCceeC-Ccc-cCccccEEeccCCCCCcc--cC-----cCCCCCceEEccCccccccc---hh
Q 039126           86 -----NKFVARNLKHCRSLTNLS-TSI-HLESLKKLILSGCSNLMS--FP-----ELFYNIKELSLDGTAINELP---SS  148 (295)
Q Consensus        86 -----~~L~~L~l~~~~~l~~l~-~~~-~~~~L~~L~l~~~~~~~~--~~-----~~~~~L~~L~l~~~~i~~~~---~~  148 (295)
                           ++|++|++++|. ++.++ ..+ .+++|+.|++++|+..+.  ++     ..+.+|++|++++|.++.++   ..
T Consensus       144 ~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  222 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA  222 (312)
T ss_dssp             HTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred             HHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence                 999999999965 45554 444 489999999999986654  22     45678999999999998443   33


Q ss_pred             -hhCCCCCcEEecCCCcCCcCcc-cccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhh
Q 039126          149 -IEYLSKLVILNLGNSSRLEGLP-SKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIF  226 (295)
Q Consensus       149 -~~~~~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  226 (295)
                       +..+++|+.|++++|......| ..+..+++|++|++++|.+. .+|..+.    ++|++|+++++ .++.++. .   
T Consensus       223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~----~~L~~L~Ls~N-~l~~~p~-~---  292 (312)
T 1wwl_A          223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP----AKLSVLDLSYN-RLDRNPS-P---  292 (312)
T ss_dssp             HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC----SEEEEEECCSS-CCCSCCC-T---
T ss_pred             HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc----CCceEEECCCC-CCCCChh-H---
Confidence             3577999999999996555454 45667899999999998875 6777532    79999999986 5777754 2   


Q ss_pred             hccCCcccEEeecCCC
Q 039126          227 TKISRNTQSFDFINCF  242 (295)
Q Consensus       227 ~~~~~~L~~L~l~~c~  242 (295)
                       ..+++|++|++++++
T Consensus       293 -~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          293 -DELPQVGNLSLKGNP  307 (312)
T ss_dssp             -TTSCEEEEEECTTCT
T ss_pred             -hhCCCCCEEeccCCC
Confidence             688999999999874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.84  E-value=6.7e-20  Score=158.40  Aligned_cols=213  Identities=15%  Similarity=0.109  Sum_probs=169.0

Q ss_pred             CCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEc
Q 039126           14 RPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARN   92 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   92 (295)
                      .+++|++|++++|.++.++ ..++.+++|++|++++|.+.+..+ +..+++|++|++++|. ++.++    ..++|++|+
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~  105 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLH  105 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE----ECTTCCEEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc----CCCCcCEEE
Confidence            3678999999999999875 678999999999999998765444 8999999999999964 44444    348999999


Q ss_pred             cccCcCCceeCCcccCccccEEeccCCCCCcccCcC---CCCCceEEccCcccccc-chhh-hCCCCCcEEecCCCcCCc
Q 039126           93 LKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPEL---FYNIKELSLDGTAINEL-PSSI-EYLSKLVILNLGNSSRLE  167 (295)
Q Consensus        93 l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~i~~~-~~~~-~~~~~L~~L~l~~~~~~~  167 (295)
                      +++|. ++.++.. .+++|+.|++++|.+.+..+..   +.+|++|++++|.++.+ +..+ ..+++|++|++++|. +.
T Consensus       106 l~~n~-l~~~~~~-~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~  182 (317)
T 3o53_A          106 AANNN-ISRVSCS-RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IY  182 (317)
T ss_dssp             CCSSC-CSEEEEC-CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CC
T ss_pred             CCCCc-cCCcCcc-ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cc
Confidence            99964 4554433 3688999999999765544433   45788999999999865 3444 478999999999984 55


Q ss_pred             CcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCC
Q 039126          168 GLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKL  244 (295)
Q Consensus       168 ~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l  244 (295)
                      .++. ...+++|++|++++|.+. .+|..+..+  ++|++|+++++ .++.++...    ..+++|++|++++++--
T Consensus       183 ~~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l--~~L~~L~L~~N-~l~~l~~~~----~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          183 DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSA--AGVTWISLRNN-KLVLIEKAL----RFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             EEEC-CCCCTTCCEEECCSSCCC-EECGGGGGG--TTCSEEECTTS-CCCEECTTC----CCCTTCCEEECTTCCCB
T ss_pred             cccc-ccccccCCEEECCCCcCC-cchhhhccc--CcccEEECcCC-cccchhhHh----hcCCCCCEEEccCCCcc
Confidence            5654 446999999999998765 456668877  99999999997 577777643    67899999999998765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.84  E-value=1.6e-19  Score=152.52  Aligned_cols=191  Identities=18%  Similarity=0.189  Sum_probs=115.0

Q ss_pred             CCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc-hhcccCCcEEcc
Q 039126           16 KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS-IRHLNKFVARNL   93 (295)
Q Consensus        16 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l   93 (295)
                      .+.+.++++++.++.+|..+.  ..|+.|++++|.+....+ .+..+++|++|++++| .+..++.. +..+++|++|++
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEEC
Confidence            457889999999888886554  678999999998765444 5888999999999885 44555544 577888888888


Q ss_pred             ccCcCCceeCCcc--cCccccEEeccCCCCCcccCc---CCCCCceEEccCccccccchh-hhCCCCCcEEecCCCcCCc
Q 039126           94 KHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE---LFYNIKELSLDGTAINELPSS-IEYLSKLVILNLGNSSRLE  167 (295)
Q Consensus        94 ~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~~~~~~~  167 (295)
                      ++| .++.++...  .+++|++|++++|.+....+.   .+.+|++|++++|.++.++.. +..+++|+.|++++|. +.
T Consensus        93 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~  170 (270)
T 2o6q_A           93 TDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LK  170 (270)
T ss_dssp             CSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CS
T ss_pred             CCC-cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-Cc
Confidence            874 345555432  366777777777654332222   223455555555555544433 4455555555555553 22


Q ss_pred             Ccc-cccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccc
Q 039126          168 GLP-SKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWC  213 (295)
Q Consensus       168 ~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~  213 (295)
                      .++ ..+.++++|++|++++|.+.+..+..+..+  ++|+.|+++++
T Consensus       171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~l~~N  215 (270)
T 2o6q_A          171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL--EKLKMLQLQEN  215 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC--TTCCEEECCSS
T ss_pred             EeChhHhccCCCcCEEECCCCcCCcCCHHHhccc--cCCCEEEecCC
Confidence            222 234555555555555554433222233333  45555555543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.84  E-value=9e-20  Score=173.11  Aligned_cols=238  Identities=18%  Similarity=0.192  Sum_probs=133.6

Q ss_pred             CCCCCcCCC--CCCCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccc
Q 039126            3 GCPFKSLSS--IIRPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLET   78 (295)
Q Consensus         3 ~~~~~~~p~--~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~   78 (295)
                      +..+..+|.  +..+++|++|++++|.+..+ |..++++++|++|++++|.+....+ .+..+++|++|++++|...+..
T Consensus        34 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  113 (680)
T 1ziw_A           34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK  113 (680)
T ss_dssp             SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred             CCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccC
Confidence            344555554  23577788888888777765 4556777888888888777553333 3777777888887775443333


Q ss_pred             ccchhcccCCcEEccccCcCCceeCCcc-cCccccEEeccCCCCCcccCc-----CCCCCceEEccCcccccc-------
Q 039126           79 HSSIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPE-----LFYNIKELSLDGTAINEL-------  145 (295)
Q Consensus        79 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~-----~~~~L~~L~l~~~~i~~~-------  145 (295)
                      +..+..+++|++|++++|......+..+ .+++|++|++++|.+.+..+.     ...+|++|++++|.++.+       
T Consensus       114 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  193 (680)
T 1ziw_A          114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA  193 (680)
T ss_dssp             SCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGG
T ss_pred             hhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhh
Confidence            3457777777777777754333333222 356666666666543332221     113445555555544422       


Q ss_pred             ---------------------------------------------chhhhCCC--CCcEEecCCCcCCcCcccccCCCCC
Q 039126          146 ---------------------------------------------PSSIEYLS--KLVILNLGNSSRLEGLPSKICKLKS  178 (295)
Q Consensus       146 ---------------------------------------------~~~~~~~~--~L~~L~l~~~~~~~~~p~~l~~l~~  178 (295)
                                                                   +..+..++  +|+.|++++|......|..++.+++
T Consensus       194 l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  273 (680)
T 1ziw_A          194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ  273 (680)
T ss_dssp             SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCccc
Confidence                                                         22333332  3666666666433334455666666


Q ss_pred             CCeeeccCCCCCCCchhhhhccCCCCcceeecccccccc-----cccccchhhhccCCcccEEeecCCC
Q 039126          179 LQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLE-----TLSGLSIIFTKISRNTQSFDFINCF  242 (295)
Q Consensus       179 L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~-----~~~~~~~~~~~~~~~L~~L~l~~c~  242 (295)
                      |++|++++|.+.+..|..+..+  ++|++|+++++..-.     .++.-.......+++|++|+++++.
T Consensus       274 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~  340 (680)
T 1ziw_A          274 LEYFFLEYNNIQHLFSHSLHGL--FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND  340 (680)
T ss_dssp             CCEEECCSCCBSEECTTTTTTC--TTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred             ccEeeCCCCccCccChhhhcCC--CCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence            6666666666665556666665  666666666532111     1111000011467777788777763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.83  E-value=1.2e-19  Score=168.69  Aligned_cols=134  Identities=15%  Similarity=0.019  Sum_probs=76.6

Q ss_pred             CccccEEeccCCCCCcccCcCC---CCCceEEccCccccccc---hhhhCCCCCcEEecCCCcCCcCcccc-cCCCCCCC
Q 039126          108 LESLKKLILSGCSNLMSFPELF---YNIKELSLDGTAINELP---SSIEYLSKLVILNLGNSSRLEGLPSK-ICKLKSLQ  180 (295)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~i~~~~---~~~~~~~~L~~L~l~~~~~~~~~p~~-l~~l~~L~  180 (295)
                      +++|++|++++|.+.+.+|..+   .+|++|++++|.++.++   ..++.+++|+.|++++|.....+|.. +..+++|+
T Consensus       352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~  431 (562)
T 3a79_B          352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL  431 (562)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred             CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence            4567777777776655555443   35667777777777543   45667777888888777544435532 44555555


Q ss_pred             eeeccCCCCCC---------------------CchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeec
Q 039126          181 HLNLSCCSNLE---------------------SFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFI  239 (295)
Q Consensus       181 ~L~l~~~~~~~---------------------~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~  239 (295)
                      +|++++|.+.+                     .+|..+..+  ++|++|+++++ .++.++...   ...+++|+.|+++
T Consensus       432 ~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l--~~L~~L~L~~N-~l~~l~~~~---~~~l~~L~~L~l~  505 (562)
T 3a79_B          432 VLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHL--QALQELNVASN-QLKSVPDGV---FDRLTSLQYIWLH  505 (562)
T ss_dssp             EEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSS--CCCSEEECCSS-CCCCCCTTS---TTTCTTCCCEECC
T ss_pred             EEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCC--CCCCEEECCCC-CCCCCCHHH---HhcCCCCCEEEec
Confidence            55555544433                     344444444  56666666654 345555431   1456667777776


Q ss_pred             CCCCChhh
Q 039126          240 NCFKLHQN  247 (295)
Q Consensus       240 ~c~~l~~~  247 (295)
                      +++--.+.
T Consensus       506 ~N~~~c~c  513 (562)
T 3a79_B          506 DNPWDCTC  513 (562)
T ss_dssp             SCCBCCCH
T ss_pred             CCCcCCCc
Confidence            66544333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=8.3e-20  Score=166.82  Aligned_cols=212  Identities=16%  Similarity=0.101  Sum_probs=170.7

Q ss_pred             CCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEcc
Q 039126           15 PKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNL   93 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   93 (295)
                      +++|+.|+|++|.+..++ ..++.+++|++|++++|.+.+..| +..+++|++|++++| .+..++.    .++|++|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L  106 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLHA  106 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEEC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEEEC
Confidence            558999999999999875 678999999999999999765555 899999999999996 4555542    389999999


Q ss_pred             ccCcCCceeCCcccCccccEEeccCCCCCcccCcCC---CCCceEEccCccccc-cchhhh-CCCCCcEEecCCCcCCcC
Q 039126           94 KHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELF---YNIKELSLDGTAINE-LPSSIE-YLSKLVILNLGNSSRLEG  168 (295)
Q Consensus        94 ~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~i~~-~~~~~~-~~~~L~~L~l~~~~~~~~  168 (295)
                      ++|. ++.++.. .+++|+.|++++|.+.+..|..+   .+|++|++++|.++. .|..+. .+++|+.|++++|. +..
T Consensus       107 ~~N~-l~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~  183 (487)
T 3oja_A          107 ANNN-ISRVSCS-RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYD  183 (487)
T ss_dssp             CSSC-CCCEEEC-CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCE
T ss_pred             cCCc-CCCCCcc-ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccc
Confidence            9964 4444432 36899999999998766656544   578899999999985 455664 78999999999995 555


Q ss_pred             cccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCC
Q 039126          169 LPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKL  244 (295)
Q Consensus       169 ~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l  244 (295)
                      +|. ...+++|++|++++|.+.+ +|..+..+  ++|+.|+++++ .++.++...    ..+++|+.|++++++-.
T Consensus       184 ~~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l--~~L~~L~Ls~N-~l~~lp~~l----~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          184 VKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSA--AGVTWISLRNN-KLVLIEKAL----RFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EEC-CCCCTTCCEEECCSSCCCE-ECGGGGGG--TTCSEEECTTS-CCCEECTTC----CCCTTCCEEECTTCCBC
T ss_pred             ccc-cccCCCCCEEECCCCCCCC-CCHhHcCC--CCccEEEecCC-cCcccchhh----ccCCCCCEEEcCCCCCc
Confidence            554 4569999999999988765 55568777  99999999996 467777643    57899999999998765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.83  E-value=3.7e-20  Score=162.34  Aligned_cols=209  Identities=18%  Similarity=0.137  Sum_probs=166.4

Q ss_pred             CCCCCcCCC--CCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCCC-CCCCCCCcEeecccccccccc
Q 039126            3 GCPFKSLSS--IIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIPS-LSLATNLESLNFQRYTSLLET   78 (295)
Q Consensus         3 ~~~~~~~p~--~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~   78 (295)
                      +..++.+|.  +..+++|++|++++|.+++++ ..++++++|++|++++|.+.+..+. +..+++|++|++++| .+..+
T Consensus        61 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l  139 (353)
T 2z80_A           61 NNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTL  139 (353)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSS
T ss_pred             CCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCccc
Confidence            445667776  346999999999999999875 5689999999999999987643334 899999999999996 55567


Q ss_pred             cc--chhcccCCcEEccccCcCCceeCCc-c-cCccccEEeccCCCCCcccCcCCC---CCceEEccCccccccchhh-h
Q 039126           79 HS--SIRHLNKFVARNLKHCRSLTNLSTS-I-HLESLKKLILSGCSNLMSFPELFY---NIKELSLDGTAINELPSSI-E  150 (295)
Q Consensus        79 ~~--~~~~l~~L~~L~l~~~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~i~~~~~~~-~  150 (295)
                      |.  .+..+++|++|++++|..++.++.. + .+++|+.|++++|.+.+..|..+.   +|++|++++|.+..++..+ .
T Consensus       140 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  219 (353)
T 2z80_A          140 GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD  219 (353)
T ss_dssp             CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHH
T ss_pred             CchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhh
Confidence            65  5889999999999998777777543 3 489999999999987766676655   5668899999998877654 4


Q ss_pred             CCCCCcEEecCCCcCCcC-------------------------------cccccCCCCCCCeeeccCCCCCCCchhhh-h
Q 039126          151 YLSKLVILNLGNSSRLEG-------------------------------LPSKICKLKSLQHLNLSCCSNLESFPNEL-R  198 (295)
Q Consensus       151 ~~~~L~~L~l~~~~~~~~-------------------------------~p~~l~~l~~L~~L~l~~~~~~~~~~~~l-~  198 (295)
                      .+++|+.|++++|.....                               +|..+.++++|++|++++|.+. .+|..+ .
T Consensus       220 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~  298 (353)
T 2z80_A          220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFD  298 (353)
T ss_dssp             HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHh
Confidence            578999999998854331                               3445678899999999998765 677764 6


Q ss_pred             ccCCCCcceeecccccc
Q 039126          199 NLFPCDLYDIEAHWCSS  215 (295)
Q Consensus       199 ~~~~~~L~~L~l~~~~~  215 (295)
                      .+  ++|++|++++++-
T Consensus       299 ~l--~~L~~L~L~~N~~  313 (353)
T 2z80_A          299 RL--TSLQKIWLHTNPW  313 (353)
T ss_dssp             TC--TTCCEEECCSSCB
T ss_pred             cC--CCCCEEEeeCCCc
Confidence            66  9999999998754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.83  E-value=1.7e-19  Score=175.27  Aligned_cols=223  Identities=17%  Similarity=0.132  Sum_probs=141.2

Q ss_pred             CCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCC-C--CCCCCCCcEeeccccccccccc-cchhcccCC
Q 039126           14 RPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIP-S--LSLATNLESLNFQRYTSLLETH-SSIRHLNKF   88 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~-~--~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L   88 (295)
                      .+++|++|+|++|.+..+ |..++++++|++|++++|.+.+..| .  +..+++|++|++++|......+ ..+..+++|
T Consensus        71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L  150 (844)
T 3j0a_A           71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL  150 (844)
T ss_dssp             SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred             CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence            467777777777776655 5566777777777777776665444 2  6677777777777754433333 356777777


Q ss_pred             cEEccccCcCCceeCCccc---------------------------Cc------cccEEeccCCCCCcccCcC-------
Q 039126           89 VARNLKHCRSLTNLSTSIH---------------------------LE------SLKKLILSGCSNLMSFPEL-------  128 (295)
Q Consensus        89 ~~L~l~~~~~l~~l~~~~~---------------------------~~------~L~~L~l~~~~~~~~~~~~-------  128 (295)
                      ++|++++|..-...+..+.                           +.      +|+.|++++|...+..+..       
T Consensus       151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~  230 (844)
T 3j0a_A          151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK  230 (844)
T ss_dssp             CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred             CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence            7777776532221111110                           11      2566666655432222110       


Q ss_pred             ----------------------------------CCCCceEEccCcccccc-chhhhCCCCCcEEecCCCcCCcCccccc
Q 039126          129 ----------------------------------FYNIKELSLDGTAINEL-PSSIEYLSKLVILNLGNSSRLEGLPSKI  173 (295)
Q Consensus       129 ----------------------------------~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~~~p~~l  173 (295)
                                                        ..+++.|++++|.+..+ +..+..+++|+.|++++|......|..+
T Consensus       231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~  310 (844)
T 3j0a_A          231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF  310 (844)
T ss_dssp             CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred             ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence                                              13466677777766644 4456677888888888875545556677


Q ss_pred             CCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126          174 CKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF  242 (295)
Q Consensus       174 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~  242 (295)
                      .++++|++|++++|.+.+..+..+..+  ++|++|+++++ .++.++....   ..+++|++|+++++.
T Consensus       311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~N-~i~~~~~~~~---~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          311 YGLDNLQVLNLSYNLLGELYSSNFYGL--PKVAYIDLQKN-HIAIIQDQTF---KFLEKLQTLDLRDNA  373 (844)
T ss_dssp             TTCSSCCEEEEESCCCSCCCSCSCSSC--TTCCEEECCSC-CCCCCCSSCS---CSCCCCCEEEEETCC
T ss_pred             cCCCCCCEEECCCCCCCccCHHHhcCC--CCCCEEECCCC-CCCccChhhh---cCCCCCCEEECCCCC
Confidence            888888888888887766667777777  88888888876 4566554221   568889999998874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.83  E-value=1.8e-20  Score=162.04  Aligned_cols=213  Identities=13%  Similarity=0.125  Sum_probs=136.8

Q ss_pred             CCCCCcCCC--CCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCC-----------------CCCCCC
Q 039126            3 GCPFKSLSS--IIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPS-----------------LSLATN   63 (295)
Q Consensus         3 ~~~~~~~p~--~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-----------------~~~l~~   63 (295)
                      +..+..++.  +..+++|++|++++|.+..++. ++.+++|++|++++|.+.+..+.                 ...+++
T Consensus        43 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~  121 (317)
T 3o53_A           43 GNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQG  121 (317)
T ss_dssp             TSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSS
T ss_pred             CCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCC
Confidence            345555552  3368899999999998887665 88889999999998875331110                 123455


Q ss_pred             CcEeeccccccccccccchhcccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCCcccCc--CCCCCceEEccC
Q 039126           64 LESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE--LFYNIKELSLDG  139 (295)
Q Consensus        64 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~  139 (295)
                      |++|++++|......+..+..+++|++|++++|......+..+  .+++|+.|++++|.+. .++.  .+.+|++|++++
T Consensus       122 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~l~~L~~L~Ls~  200 (317)
T 3o53_A          122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSS  200 (317)
T ss_dssp             CEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEECCCCCTTCCEEECCS
T ss_pred             CCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-ccccccccccCCEEECCC
Confidence            6666666654333334456667777777777754333333332  2567777777776543 2232  245677777777


Q ss_pred             ccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCC-CCchhhhhccCCCCcceeeccccccccc
Q 039126          140 TAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNL-ESFPNELRNLFPCDLYDIEAHWCSSLET  218 (295)
Q Consensus       140 ~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~-~~~~~~l~~~~~~~L~~L~l~~~~~l~~  218 (295)
                      |.++.+|..+..+++|+.|++++| .+..+|..+..+++|+.|++++|.+. +..+..+..+  +.|+.++++++..++.
T Consensus       201 N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~--~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          201 NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN--QRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC--HHHHHHHHHHHHHHHS
T ss_pred             CcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc--ccceEEECCCchhccC
Confidence            777777666777777777777776 45566666777777777777777766 4566666666  7777777776665554


Q ss_pred             cc
Q 039126          219 LS  220 (295)
Q Consensus       219 ~~  220 (295)
                      ..
T Consensus       278 ~~  279 (317)
T 3o53_A          278 QN  279 (317)
T ss_dssp             SS
T ss_pred             Cc
Confidence            43

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1e-19  Score=159.33  Aligned_cols=226  Identities=17%  Similarity=0.198  Sum_probs=180.2

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeeccccccccccc
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETH   79 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~   79 (295)
                      +..++++|..+ .+++++|+|++|+|+.+|. .++++++|++|+|++|.+.+.+|  .|..+++++++...+++.+..++
T Consensus        18 ~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~   96 (350)
T 4ay9_X           18 ESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN   96 (350)
T ss_dssp             STTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred             CCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence            34577788644 5789999999999999986 57999999999999999877777  48899998887666667777775


Q ss_pred             -cchhcccCCcEEccccCcCCceeCCccc--CccccEEeccCCCCCcccCcC-C----CCCceEEccCccccccchhhhC
Q 039126           80 -SSIRHLNKFVARNLKHCRSLTNLSTSIH--LESLKKLILSGCSNLMSFPEL-F----YNIKELSLDGTAINELPSSIEY  151 (295)
Q Consensus        80 -~~~~~l~~L~~L~l~~~~~l~~l~~~~~--~~~L~~L~l~~~~~~~~~~~~-~----~~L~~L~l~~~~i~~~~~~~~~  151 (295)
                       ..+..+++|++|++++| .++.++....  ...+..+++.++..+..++.. +    ..++.|++++|.++.++..+..
T Consensus        97 ~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~  175 (350)
T 4ay9_X           97 PEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN  175 (350)
T ss_dssp             TTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST
T ss_pred             chhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc
Confidence             55899999999999985 5566665443  556778888776666666642 2    2567899999999999888777


Q ss_pred             CCCCcEEecCCCcCCcCccc-ccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccC
Q 039126          152 LSKLVILNLGNSSRLEGLPS-KICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKIS  230 (295)
Q Consensus       152 ~~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  230 (295)
                      .++|+.+++.++..++.+|. .+.++++|++|++++|.+ ..+|..  .+  .+|++|.+.++.+++.+|. .    ..+
T Consensus       176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l-~~lp~~--~~--~~L~~L~~l~~~~l~~lP~-l----~~l  245 (350)
T 4ay9_X          176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-HSLPSY--GL--ENLKKLRARSTYNLKKLPT-L----EKL  245 (350)
T ss_dssp             TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC-CCCCSS--SC--TTCCEEECTTCTTCCCCCC-T----TTC
T ss_pred             ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc-CccChh--hh--ccchHhhhccCCCcCcCCC-c----hhC
Confidence            78999999988778888885 578999999999999865 456653  23  7889999888889999885 2    589


Q ss_pred             CcccEEeecC
Q 039126          231 RNTQSFDFIN  240 (295)
Q Consensus       231 ~~L~~L~l~~  240 (295)
                      ++|+.+++.+
T Consensus       246 ~~L~~l~l~~  255 (350)
T 4ay9_X          246 VALMEASLTY  255 (350)
T ss_dssp             CSCCEEECSC
T ss_pred             cChhhCcCCC
Confidence            9999999865

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=1.2e-19  Score=150.34  Aligned_cols=200  Identities=14%  Similarity=0.152  Sum_probs=123.0

Q ss_pred             CCcCCCCCCCCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeeccccccccccc-cc
Q 039126            6 FKSLSSIIRPKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETH-SS   81 (295)
Q Consensus         6 ~~~~p~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~-~~   81 (295)
                      ++++|.  ..++++.|++++|.++.++. .++++++|++|++++|.....++  .+..+++|++|++++|+.++.++ ..
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~  100 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA  100 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred             ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence            556666  44578888888888887765 56778888888888886333443  47778888888888755566665 34


Q ss_pred             hhcccCCcEEccccCcCCceeCCcccCcccc---EEeccCCCCCcccCc----CCCCCc-eEEccCccccccchhhhCCC
Q 039126           82 IRHLNKFVARNLKHCRSLTNLSTSIHLESLK---KLILSGCSNLMSFPE----LFYNIK-ELSLDGTAINELPSSIEYLS  153 (295)
Q Consensus        82 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~---~L~l~~~~~~~~~~~----~~~~L~-~L~l~~~~i~~~~~~~~~~~  153 (295)
                      +..+++|++|++++| .++.+|....+++|+   .|++++|..+..++.    .+.+|+ +|++++|.++.+|......+
T Consensus       101 f~~l~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~  179 (239)
T 2xwt_C          101 LKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT  179 (239)
T ss_dssp             EECCTTCCEEEEEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTC
T ss_pred             hCCCCCCCEEeCCCC-CCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCC
Confidence            677788888888774 344566533455665   777777622333333    123555 66666666666655443345


Q ss_pred             CCcEEecCCCcCCcCcc-cccCCC-CCCCeeeccCCCCCCCchhhhhccCCCCcceeecccc
Q 039126          154 KLVILNLGNSSRLEGLP-SKICKL-KSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWC  213 (295)
Q Consensus       154 ~L~~L~l~~~~~~~~~p-~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~  213 (295)
                      +|+.|++++|..+..+| ..+.++ ++|+.|++++|.+. .+|..  .+  ++|++|+++++
T Consensus       180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~--~~L~~L~l~~~  236 (239)
T 2xwt_C          180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GL--EHLKELIARNT  236 (239)
T ss_dssp             EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TC--TTCSEEECTTC
T ss_pred             CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--Hh--ccCceeeccCc
Confidence            66666666664344443 345566 66666666665543 33333  22  55666655554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.82  E-value=6.2e-20  Score=169.92  Aligned_cols=207  Identities=17%  Similarity=0.128  Sum_probs=149.4

Q ss_pred             CCCCcCCCCCCCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc
Q 039126            4 CPFKSLSSIIRPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS   81 (295)
Q Consensus         4 ~~~~~~p~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~   81 (295)
                      ..++++|... .++|++|++++|.++++ |..++++++|++|++++|.+.+..| .+..+++|++|++++|......+..
T Consensus        15 ~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   93 (549)
T 2z81_A           15 RSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW   93 (549)
T ss_dssp             SCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred             CccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH
Confidence            3566777644 47899999999999887 4678999999999999999877666 5899999999999997554444455


Q ss_pred             hhcccCCcEEccccCcCCc-eeCCcc-cCccccEEeccCCCCCcccCc-CC---CCCceEEccCcccc-ccchhhhCCCC
Q 039126           82 IRHLNKFVARNLKHCRSLT-NLSTSI-HLESLKKLILSGCSNLMSFPE-LF---YNIKELSLDGTAIN-ELPSSIEYLSK  154 (295)
Q Consensus        82 ~~~l~~L~~L~l~~~~~l~-~l~~~~-~~~~L~~L~l~~~~~~~~~~~-~~---~~L~~L~l~~~~i~-~~~~~~~~~~~  154 (295)
                      +..+++|++|++++|.... ..+..+ .+++|+.|++++|...+.+|. .+   .+|++|++++|.++ ..|..++.+++
T Consensus        94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  173 (549)
T 2z81_A           94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD  173 (549)
T ss_dssp             HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred             hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence            8999999999999964332 233333 488999999999876666663 33   45678899999888 46777888888


Q ss_pred             CcEEecCCCcCCcCccccc-CCCCCCCeeeccCCCCCCCc--hhhhhccCCCCcceeecccc
Q 039126          155 LVILNLGNSSRLEGLPSKI-CKLKSLQHLNLSCCSNLESF--PNELRNLFPCDLYDIEAHWC  213 (295)
Q Consensus       155 L~~L~l~~~~~~~~~p~~l-~~l~~L~~L~l~~~~~~~~~--~~~l~~~~~~~L~~L~l~~~  213 (295)
                      |++|+++.|. ...+|..+ ..+++|++|++++|.+.+..  +..+.. .+++|++|+++++
T Consensus       174 L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~~L~~L~l~~n  233 (549)
T 2z81_A          174 IHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE-VSSPMKKLAFRGS  233 (549)
T ss_dssp             EEEEEEECSB-STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCC-CCCCCCEEEEESC
T ss_pred             CceEecccCc-ccccchhhHhhcccccEEEccCCccccccccccchhh-hhhcccceecccc
Confidence            8888888774 44455433 45778888888887665521  111111 1255666666554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=1.8e-19  Score=155.12  Aligned_cols=196  Identities=17%  Similarity=0.209  Sum_probs=152.4

Q ss_pred             CCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEE
Q 039126           12 IIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVAR   91 (295)
Q Consensus        12 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   91 (295)
                      ...+++|+.|++++|.+..++ .+..+++|++|++++|.+.+ ++.+..+++|++|++++|. ++.++ .+..+++|++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~-~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L  112 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD-LAPLKNLTKITELELSGNP-LKNVS-AIAGLQSIKTL  112 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGGGTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEE
T ss_pred             HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCC-ChhHccCCCCCEEEccCCc-CCCch-hhcCCCCCCEE
Confidence            335788999999999988886 68889999999999998654 4448899999999999965 55554 67889999999


Q ss_pred             ccccCcCCceeCCcccCccccEEeccCCCCCcccCc--CCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCc
Q 039126           92 NLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPE--LFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGL  169 (295)
Q Consensus        92 ~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~  169 (295)
                      ++++| .++.++....+++|+.|++++|.+. .++.  .+.+|++|++++|.++.++. +..+++|+.|++++|. +..+
T Consensus       113 ~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~  188 (308)
T 1h6u_A          113 DLTST-QITDVTPLAGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDI  188 (308)
T ss_dssp             ECTTS-CCCCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCC
T ss_pred             ECCCC-CCCCchhhcCCCCCCEEECCCCccC-cCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcC
Confidence            99985 4566665446889999999998644 3332  34578899999999888776 7888999999999884 5556


Q ss_pred             ccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccc
Q 039126          170 PSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSG  221 (295)
Q Consensus       170 p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~  221 (295)
                      +. +..+++|++|++++|.+.+..  .+..+  ++|++|++++++ ++..+.
T Consensus       189 ~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l--~~L~~L~l~~N~-i~~~~~  234 (308)
T 1h6u_A          189 SP-LASLPNLIEVHLKNNQISDVS--PLANT--SNLFIVTLTNQT-ITNQPV  234 (308)
T ss_dssp             GG-GGGCTTCCEEECTTSCCCBCG--GGTTC--TTCCEEEEEEEE-EECCCE
T ss_pred             hh-hcCCCCCCEEEccCCccCccc--cccCC--CCCCEEEccCCe-eecCCe
Confidence            54 788999999999998766543  26666  899999999865 565554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.82  E-value=4e-19  Score=165.07  Aligned_cols=183  Identities=18%  Similarity=0.211  Sum_probs=131.2

Q ss_pred             CCCCCCcCCCCCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccc
Q 039126            2 HGCPFKSLSSIIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETH   79 (295)
Q Consensus         2 ~~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~   79 (295)
                      .+..+.++|..+ .++++.|++++|.++.++ ..+.++++|++|++++|.+.+..+ .+..+++|++|++++|......+
T Consensus        15 ~~~~l~~ip~~l-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (570)
T 2z63_A           15 MELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL   93 (570)
T ss_dssp             CSSCCSSCCSSS-CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred             CCCCccccCCCc-cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH
Confidence            345567777633 567999999999998875 468999999999999998766555 48999999999999965444444


Q ss_pred             cchhcccCCcEEccccCcCCceeCCc-c-cCccccEEeccCCCCCc-ccCcCC---CCCceEEccCcccccc-chhhhCC
Q 039126           80 SSIRHLNKFVARNLKHCRSLTNLSTS-I-HLESLKKLILSGCSNLM-SFPELF---YNIKELSLDGTAINEL-PSSIEYL  152 (295)
Q Consensus        80 ~~~~~l~~L~~L~l~~~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~-~~~~~~---~~L~~L~l~~~~i~~~-~~~~~~~  152 (295)
                      ..+..+++|++|++++| .++.++.. + .+++|++|++++|.+.+ .+|..+   .+|++|++++|.++.+ +..++.+
T Consensus        94 ~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  172 (570)
T 2z63_A           94 GAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL  172 (570)
T ss_dssp             TTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHH
T ss_pred             hhhcCcccccccccccc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccch
Confidence            67899999999999985 45655542 2 48899999999987654 456654   4788999999988865 3456666


Q ss_pred             CCC----cEEecCCCcCCcCcccccCCCCCCCeeeccCC
Q 039126          153 SKL----VILNLGNSSRLEGLPSKICKLKSLQHLNLSCC  187 (295)
Q Consensus       153 ~~L----~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~  187 (295)
                      ++|    ..+++++|......|..+..+ +|+.|++++|
T Consensus       173 ~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n  210 (570)
T 2z63_A          173 HQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNN  210 (570)
T ss_dssp             HTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESC
T ss_pred             hccchhhhhcccCCCCceecCHHHhccC-cceeEecccc
Confidence            666    778887774333333333222 4555554443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=4.2e-20  Score=160.63  Aligned_cols=225  Identities=15%  Similarity=0.172  Sum_probs=174.5

Q ss_pred             CCceeEecCCCCccccchhhcCC--CCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccc-cccchhcccCCcEEc
Q 039126           16 KNLVSPEIPRNSIKQLWKVVQRL--VNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLE-THSSIRHLNKFVARN   92 (295)
Q Consensus        16 ~~L~~L~l~~~~~~~l~~~~~~l--~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~   92 (295)
                      ..++.++++++.+.  +..+..+  ..++.|++.+|.+.+..+.+..+++|++|++++|..... ++..+..+++|++|+
T Consensus        47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            44789999998776  4556666  899999999998877777788899999999999875444 777788999999999


Q ss_pred             cccCcCCceeCCcc-cCccccEEeccCCCCCcc--cCc---CCCCCceEEccCc-cccc--cchhhhCCC-CCcEEecCC
Q 039126           93 LKHCRSLTNLSTSI-HLESLKKLILSGCSNLMS--FPE---LFYNIKELSLDGT-AINE--LPSSIEYLS-KLVILNLGN  162 (295)
Q Consensus        93 l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~--~~~---~~~~L~~L~l~~~-~i~~--~~~~~~~~~-~L~~L~l~~  162 (295)
                      +++|..-...+..+ .+++|++|++++|...+.  ++.   .+++|++|++++| .++.  ++..+..++ +|++|++++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            99975433344333 389999999999943332  333   4668999999999 8883  677788899 999999999


Q ss_pred             Cc-CC--cCcccccCCCCCCCeeeccCCC-CCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEee
Q 039126          163 SS-RL--EGLPSKICKLKSLQHLNLSCCS-NLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDF  238 (295)
Q Consensus       163 ~~-~~--~~~p~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l  238 (295)
                      |. .+  ..+|..+.++++|++|++++|. +.+..+..+..+  ++|++|++++|..+.....   .....+++|++|++
T Consensus       205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~---~~l~~~~~L~~L~l  279 (336)
T 2ast_B          205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL--NYLQHLSLSRCYDIIPETL---LELGEIPTLKTLQV  279 (336)
T ss_dssp             CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC--TTCCEEECTTCTTCCGGGG---GGGGGCTTCCEEEC
T ss_pred             CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC--CCCCEeeCCCCCCCCHHHH---HHHhcCCCCCEEec
Confidence            84 23  4466677889999999999998 556778888887  9999999999874443322   11257999999999


Q ss_pred             cCCCCChhhhH
Q 039126          239 INCFKLHQNVV  249 (295)
Q Consensus       239 ~~c~~l~~~~~  249 (295)
                      ++|  +++...
T Consensus       280 ~~~--i~~~~~  288 (336)
T 2ast_B          280 FGI--VPDGTL  288 (336)
T ss_dssp             TTS--SCTTCH
T ss_pred             cCc--cCHHHH
Confidence            999  555433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.82  E-value=5e-19  Score=149.79  Aligned_cols=213  Identities=15%  Similarity=0.072  Sum_probs=161.3

Q ss_pred             eEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcC
Q 039126           20 SPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRS   98 (295)
Q Consensus        20 ~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   98 (295)
                      ..+..+..+..+|..+.  +.|++|++++|.+.+..+ .+..+++|++|++++|......+..+..+++|++|++++|. 
T Consensus        11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-   87 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-   87 (276)
T ss_dssp             EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-
T ss_pred             eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-
Confidence            45556667777887554  579999999999776666 68999999999999975443344568999999999999964 


Q ss_pred             CceeCC-cc-cCccccEEeccCCCCCcccCc---CCCCCceEEccCccccc--cchhhhCCCCCcEEecCCCcCCcCccc
Q 039126           99 LTNLST-SI-HLESLKKLILSGCSNLMSFPE---LFYNIKELSLDGTAINE--LPSSIEYLSKLVILNLGNSSRLEGLPS  171 (295)
Q Consensus        99 l~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~i~~--~~~~~~~~~~L~~L~l~~~~~~~~~p~  171 (295)
                      ++.++. .+ .+++|+.|++++|...+..+.   .+.+|++|++++|.++.  +|..++.+++|+.|++++|......+.
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~  167 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence            555553 33 489999999999875543332   34578899999999985  688999999999999999964444445


Q ss_pred             ccCCCCCCC----eeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126          172 KICKLKSLQ----HLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF  242 (295)
Q Consensus       172 ~l~~l~~L~----~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~  242 (295)
                      .+..+++|+    +|++++|.+.+ ++......  .+|++|+++++. ++.++...   ...+++|++|++++++
T Consensus       168 ~~~~l~~L~~l~l~L~ls~n~l~~-~~~~~~~~--~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          168 DLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKE--IRLKELALDTNQ-LKSVPDGI---FDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             GGHHHHTCTTCCEEEECCSSCCCE-ECTTSSCS--CCEEEEECCSSC-CSCCCTTT---TTTCCSCCEEECCSSC
T ss_pred             HhhhhhhccccceeeecCCCcccc-cCccccCC--CcccEEECCCCc-eeecCHhH---hcccccccEEEccCCc
Confidence            666666666    89999987654 44444343  689999999875 77776532   2578999999999654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.81  E-value=3.7e-19  Score=150.40  Aligned_cols=199  Identities=18%  Similarity=0.093  Sum_probs=142.8

Q ss_pred             CCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcE
Q 039126           11 SIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVA   90 (295)
Q Consensus        11 ~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   90 (295)
                      ....+++|+.|++++|.+..++ .++.+++|++|++++|.+.+ ++.+..+++|++|++++|......+..+..+++|++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            3345788899999988887765 47788999999999988643 567888899999999886443333344788899999


Q ss_pred             EccccCcCCceeCCcc--cCccccEEeccCCCCCcccCc---CCCCCceEEccCccccccchh-hhCCCCCcEEecCCCc
Q 039126           91 RNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE---LFYNIKELSLDGTAINELPSS-IEYLSKLVILNLGNSS  164 (295)
Q Consensus        91 L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~~~~  164 (295)
                      |++++|. ++.++...  .+++|+.|++++|.+.+..+.   .+.+|++|++++|.++.++.. ++.+++|+.|++++|.
T Consensus       114 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          114 LVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             EECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence            9998854 45555432  478899999988865433332   245788888888888876654 5778889999998885


Q ss_pred             CCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccc
Q 039126          165 RLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSG  221 (295)
Q Consensus       165 ~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~  221 (295)
                      .....+..+..+++|+.|++++|.+.+.         +++|+.+++..+.....+|.
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~---------~~~l~~l~~~~n~~~g~ip~  240 (272)
T 3rfs_A          193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT---------CPGIRYLSEWINKHSGVVRN  240 (272)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCCC---------TTTTHHHHHHHHHTGGGBBC
T ss_pred             CCccCHHHHhCCcCCCEEEccCCCcccc---------CcHHHHHHHHHHhCCCcccC
Confidence            4444445578888899999988876543         26677777776554444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.81  E-value=3.1e-18  Score=144.56  Aligned_cols=185  Identities=23%  Similarity=0.285  Sum_probs=146.7

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCCC-CCCCCCCcEeeccccccccccc-
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIPS-LSLATNLESLNFQRYTSLLETH-   79 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-   79 (295)
                      +..++.+|..+ .++++.|++++|.+..++. .++++++|++|++++|.+....+. +..+++|++|++++|. +..++ 
T Consensus        25 ~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~  102 (270)
T 2o6q_A           25 SKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPI  102 (270)
T ss_dssp             TSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCT
T ss_pred             CCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCH
Confidence            34566677543 3789999999999998875 689999999999999987644343 6899999999999965 45555 


Q ss_pred             cchhcccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCCcccCc----CCCCCceEEccCccccccchh-hhCC
Q 039126           80 SSIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE----LFYNIKELSLDGTAINELPSS-IEYL  152 (295)
Q Consensus        80 ~~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~i~~~~~~-~~~~  152 (295)
                      ..+..+++|++|++++| .++.++...  .+++|+.|++++|.+. .+|.    .+.+|++|++++|.++.++.. +..+
T Consensus       103 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  180 (270)
T 2o6q_A          103 GVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL  180 (270)
T ss_dssp             TTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             hHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccC
Confidence            45789999999999995 455555433  4899999999998754 4443    345889999999999988764 7889


Q ss_pred             CCCcEEecCCCcCCcCcc-cccCCCCCCCeeeccCCCCCCC
Q 039126          153 SKLVILNLGNSSRLEGLP-SKICKLKSLQHLNLSCCSNLES  192 (295)
Q Consensus       153 ~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~  192 (295)
                      ++|++|++++|. +..+| ..+..+++|+.|++++|++...
T Consensus       181 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          181 TELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             TTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            999999999984 55555 4588899999999999986543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.81  E-value=1.3e-18  Score=148.37  Aligned_cols=190  Identities=22%  Similarity=0.158  Sum_probs=94.3

Q ss_pred             CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEc
Q 039126           14 RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARN   92 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   92 (295)
                      .+++++.++++++.++.+|..+.  +.++.|++++|.+.+..+ .+..+++|++|++++| .++.++.. ..+++|++|+
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~   83 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLD   83 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEE
T ss_pred             ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEE
Confidence            45556666666666666655443  456666666666544433 3566666666666663 23333322 4555666666


Q ss_pred             cccCcCCceeCCcc-cCccccEEeccCCCCCcccCc---CCCCCceEEccCccccccchh-hhCCCCCcEEecCCCcCCc
Q 039126           93 LKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPE---LFYNIKELSLDGTAINELPSS-IEYLSKLVILNLGNSSRLE  167 (295)
Q Consensus        93 l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~~~~~~~  167 (295)
                      +++| .++.+|..+ .+++|+.|++++|++.+-.+.   .+.+|++|++++|.++.+|.. +..+++|+.|++++|. +.
T Consensus        84 Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~  161 (290)
T 1p9a_G           84 LSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LT  161 (290)
T ss_dssp             CCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CS
T ss_pred             CCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CC
Confidence            6553 334444433 255555555555543322112   122444555555555544332 3445555555555542 33


Q ss_pred             Cccc-ccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccc
Q 039126          168 GLPS-KICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHW  212 (295)
Q Consensus       168 ~~p~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~  212 (295)
                      .+|. .+.++++|+.|++++|.+. .+|..+...  .+|+++++++
T Consensus       162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~--~~L~~l~L~~  204 (290)
T 1p9a_G          162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS--HLLPFAFLHG  204 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT--CCCSEEECCS
T ss_pred             ccCHHHhcCcCCCCEEECCCCcCC-ccChhhccc--ccCCeEEeCC
Confidence            3332 2344555555555554432 444444443  4555555554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.80  E-value=6.1e-19  Score=149.08  Aligned_cols=190  Identities=18%  Similarity=0.179  Sum_probs=154.6

Q ss_pred             CCCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCC-CCCCCCCcEeecccccccccccc
Q 039126            2 HGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPS-LSLATNLESLNFQRYTSLLETHS   80 (295)
Q Consensus         2 ~~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~   80 (295)
                      .+..+..++.+..+++|++|++++|.+..++ .++.+++|++|++++|.+.+..+. +..+++|++|++++|......+.
T Consensus        49 ~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  127 (272)
T 3rfs_A           49 NNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG  127 (272)
T ss_dssp             TTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred             CCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHH
Confidence            3456777787778999999999999998875 789999999999999987755553 79999999999999754444444


Q ss_pred             chhcccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCCcccCc---CCCCCceEEccCccccccchh-hhCCCC
Q 039126           81 SIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE---LFYNIKELSLDGTAINELPSS-IEYLSK  154 (295)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~~~~-~~~~~~  154 (295)
                      .+..+++|++|++++| .++.++...  .+++|+.|++++|.+.+..+.   .+.+|++|++++|.++.++.. ++.+++
T Consensus       128 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  206 (272)
T 3rfs_A          128 VFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS  206 (272)
T ss_dssp             TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             HhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence            5789999999999996 566666543  489999999999976544333   345789999999999977654 688999


Q ss_pred             CcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhcc
Q 039126          155 LVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNL  200 (295)
Q Consensus       155 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~  200 (295)
                      |+.|++++|..       .+.++.|+.++++.|.+.+.+|..++.+
T Consensus       207 L~~L~l~~N~~-------~~~~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          207 LQYIWLHDNPW-------DCTCPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             CCEEECCSSCB-------CCCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             CCEEEccCCCc-------cccCcHHHHHHHHHHhCCCcccCccccc
Confidence            99999999853       3457789999999999999999887765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.80  E-value=8.9e-19  Score=150.83  Aligned_cols=217  Identities=16%  Similarity=0.142  Sum_probs=165.7

Q ss_pred             CCCCceeEecCCCCccc--cch--hhcCCCCCcEEecCCCCCCCcCC-CC--CCCCCCcEeeccccccccccc----cch
Q 039126           14 RPKNLVSPEIPRNSIKQ--LWK--VVQRLVNLKSINLNHSEHLTEIP-SL--SLATNLESLNFQRYTSLLETH----SSI   82 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~--l~~--~~~~l~~L~~L~L~~~~~~~~~~-~~--~~l~~L~~L~l~~~~~~~~~~----~~~   82 (295)
                      ....++.+.+.++.+..  +..  ....+++|++|++++|.+.+..| .+  ..+++|++|++++|......+    ..+
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            34457788888877653  221  22345779999999999888887 45  899999999999976555433    234


Q ss_pred             hcccCCcEEccccCcCCceeC-Ccc-cCccccEEeccCCCCCcc--c-----CcCCCCCceEEccCccccccchh----h
Q 039126           83 RHLNKFVARNLKHCRSLTNLS-TSI-HLESLKKLILSGCSNLMS--F-----PELFYNIKELSLDGTAINELPSS----I  149 (295)
Q Consensus        83 ~~l~~L~~L~l~~~~~l~~l~-~~~-~~~~L~~L~l~~~~~~~~--~-----~~~~~~L~~L~l~~~~i~~~~~~----~  149 (295)
                      ..+++|++|++++|.. ...+ ..+ .+++|++|++++|+..+.  +     ...+++|++|++++|.++.++..    +
T Consensus       142 ~~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~  220 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA  220 (310)
T ss_dssp             TBCSCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred             hhccCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence            5799999999999655 4444 333 489999999999986542  2     23566899999999999866553    4


Q ss_pred             hCCCCCcEEecCCCcCCcCcccccCCC---CCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhh
Q 039126          150 EYLSKLVILNLGNSSRLEGLPSKICKL---KSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIF  226 (295)
Q Consensus       150 ~~~~~L~~L~l~~~~~~~~~p~~l~~l---~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  226 (295)
                      +.+++|++|++++|......|..+..+   ++|++|++++|.+. .+|..+    +++|++|+++++ .++.++. .   
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~----~~~L~~L~Ls~N-~l~~~~~-~---  290 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL----PAKLRVLDLSSN-RLNRAPQ-P---  290 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC----CSCCSCEECCSC-CCCSCCC-T---
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh----cCCCCEEECCCC-cCCCCch-h---
Confidence            778999999999997555557777766   69999999998876 677653    389999999986 4676654 1   


Q ss_pred             hccCCcccEEeecCCC
Q 039126          227 TKISRNTQSFDFINCF  242 (295)
Q Consensus       227 ~~~~~~L~~L~l~~c~  242 (295)
                       ..+++|++|++++++
T Consensus       291 -~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          291 -DELPEVDNLTLDGNP  305 (310)
T ss_dssp             -TSCCCCSCEECSSTT
T ss_pred             -hhCCCccEEECcCCC
Confidence             578999999999875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=2.7e-19  Score=148.28  Aligned_cols=205  Identities=17%  Similarity=0.179  Sum_probs=159.0

Q ss_pred             CccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc-chhcccCCcEEccccCcCCceeCC
Q 039126           27 SIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS-SIRHLNKFVARNLKHCRSLTNLST  104 (295)
Q Consensus        27 ~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~  104 (295)
                      .++++|. +.  ..|++|++++|.+.+..+ .+..+++|++|++++|..++.++. .+..+++|++|++++|..++.++.
T Consensus        22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            4777776 43  489999999999765555 589999999999999765777775 588999999999998667778775


Q ss_pred             cc--cCccccEEeccCCCCCcccCc--CCCCCc---eEEccCc-cccccchh-hhCCCCCc-EEecCCCcCCcCcccccC
Q 039126          105 SI--HLESLKKLILSGCSNLMSFPE--LFYNIK---ELSLDGT-AINELPSS-IEYLSKLV-ILNLGNSSRLEGLPSKIC  174 (295)
Q Consensus       105 ~~--~~~~L~~L~l~~~~~~~~~~~--~~~~L~---~L~l~~~-~i~~~~~~-~~~~~~L~-~L~l~~~~~~~~~p~~l~  174 (295)
                      ..  .+++|+.|++++|.+. .+|.  .+.+|+   +|++++| .++.++.. +..+++|+ .|++++|. +..+|....
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~  176 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAF  176 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCC-SCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTT
T ss_pred             HHhCCCCCCCEEeCCCCCCc-cccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhc
Confidence            44  4899999999998754 4675  334666   9999999 99988764 78899999 99999984 557776555


Q ss_pred             CCCCCCeeeccCCCCCCCchh-hhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCC
Q 039126          175 KLKSLQHLNLSCCSNLESFPN-ELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKL  244 (295)
Q Consensus       175 ~l~~L~~L~l~~~~~~~~~~~-~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l  244 (295)
                      ..++|+.|++++|.....++. .+..+ .++|+.|+++++ .++.++.      ..+++|+.|++.++..|
T Consensus       177 ~~~~L~~L~L~~n~~l~~i~~~~~~~l-~~~L~~L~l~~N-~l~~l~~------~~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          177 NGTKLDAVYLNKNKYLTVIDKDAFGGV-YSGPSLLDVSQT-SVTALPS------KGLEHLKELIARNTWTL  239 (239)
T ss_dssp             TTCEEEEEECTTCTTCCEECTTTTTTC-SBCCSEEECTTC-CCCCCCC------TTCTTCSEEECTTC---
T ss_pred             CCCCCCEEEcCCCCCcccCCHHHhhcc-ccCCcEEECCCC-ccccCCh------hHhccCceeeccCccCC
Confidence            558999999999853344544 44432 268999999985 5788776      47899999999998653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.80  E-value=4e-18  Score=154.33  Aligned_cols=131  Identities=16%  Similarity=0.173  Sum_probs=55.2

Q ss_pred             CCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcc
Q 039126            6 FKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHL   85 (295)
Q Consensus         6 ~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l   85 (295)
                      +..+|.+..+++|++|++++|.++.+|..+   .+|++|++++|.+.+ +|++..+++|++|++++|. +..+|..   .
T Consensus       143 l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~-l~~l~~~---~  214 (454)
T 1jl5_A          143 LEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNS-LKKLPDL---P  214 (454)
T ss_dssp             CSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC-CSSCCCC---C
T ss_pred             CCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-CccccCCCCCCEEECCCCc-CCcCCCC---c
Confidence            333443333444444444444444433221   244444444444322 3444555555555555532 2222211   1


Q ss_pred             cCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccCcCCCCCceEEccCccccccc
Q 039126           86 NKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELP  146 (295)
Q Consensus        86 ~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~  146 (295)
                      ++|++|++++| .++.+|....+++|+.|++++|++. .+|....+|++|++++|.++.+|
T Consensus       215 ~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~l~~N~l~-~l~~~~~~L~~L~l~~N~l~~l~  273 (454)
T 1jl5_A          215 LSLESIVAGNN-ILEELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLP  273 (454)
T ss_dssp             TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSCCS-SCCSCCTTCCEEECCSSCCSCCC
T ss_pred             CcccEEECcCC-cCCcccccCCCCCCCEEECCCCcCC-cccccccccCEEECCCCcccccC
Confidence            23444444443 2223333223455555555555422 34444444555555554444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.80  E-value=5.6e-18  Score=158.44  Aligned_cols=219  Identities=20%  Similarity=0.220  Sum_probs=126.9

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccch
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSI   82 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~   82 (295)
                      +..++.+|..+. ++|+.|++++|.++.+|.   .+++|++|++++|.+. .+|.  .+++|++|++++| .+..+|.  
T Consensus        49 ~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~--~l~~L~~L~Ls~N-~l~~l~~--  118 (622)
T 3g06_A           49 ESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT-SLPV--LPPGLLELSIFSN-PLTHLPA--  118 (622)
T ss_dssp             SSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS-CCCC--CCTTCCEEEECSC-CCCCCCC--
T ss_pred             CCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC-cCCC--CCCCCCEEECcCC-cCCCCCC--
Confidence            455666776443 678888888887777765   5677888888887753 4554  5566777777664 3333433  


Q ss_pred             hcc--------------------cCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccCcCCCCCceEEccCccc
Q 039126           83 RHL--------------------NKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAI  142 (295)
Q Consensus        83 ~~l--------------------~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i  142 (295)
                       .+                    ++|++|++++| .++.+|..  +.+|+.|++++|. +..+|..+.+|+.|++++|.+
T Consensus       119 -~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N-~l~~l~~~--~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~l  193 (622)
T 3g06_A          119 -LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN-QLASLPAL--PSELCKLWAYNNQ-LTSLPMLPSGLQELSVSDNQL  193 (622)
T ss_dssp             -CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCC
T ss_pred             -CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCC-cCCCcCCc--cCCCCEEECCCCC-CCCCcccCCCCcEEECCCCCC
Confidence             23                    44555555553 22333221  2233333333332 112333333444444444444


Q ss_pred             cccchhhh-----------------CCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCc
Q 039126          143 NELPSSIE-----------------YLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDL  205 (295)
Q Consensus       143 ~~~~~~~~-----------------~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L  205 (295)
                      +.+|..+.                 .+++|+.|++++| .+..+|   ..+++|+.|++++|.+. .+|.   .  +++|
T Consensus       194 ~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N~L~-~lp~---~--~~~L  263 (622)
T 3g06_A          194 ASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLP---VLPSELKELMVSGNRLT-SLPM---L--PSGL  263 (622)
T ss_dssp             SCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSCCS-CCCC---C--CTTC
T ss_pred             CCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCCCCC-cCCc---c--cccC
Confidence            43332110                 1256777777766 345555   34677888888887654 4555   2  3889


Q ss_pred             ceeecccccccccccccchhhhccCCcccEEeecCCCCChhhhHhhH
Q 039126          206 YDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNVVQGI  252 (295)
Q Consensus       206 ~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  252 (295)
                      ++|++++| .++.+|..+    ..+++|+.|++++++ +.......+
T Consensus       264 ~~L~Ls~N-~L~~lp~~l----~~l~~L~~L~L~~N~-l~~~~~~~l  304 (622)
T 3g06_A          264 LSLSVYRN-QLTRLPESL----IHLSSETTVNLEGNP-LSERTLQAL  304 (622)
T ss_dssp             CEEECCSS-CCCSCCGGG----GGSCTTCEEECCSCC-CCHHHHHHH
T ss_pred             cEEeCCCC-CCCcCCHHH----hhccccCEEEecCCC-CCCcCHHHH
Confidence            99999986 567777543    688999999999986 444433333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.80  E-value=4.2e-18  Score=159.28  Aligned_cols=193  Identities=22%  Similarity=0.241  Sum_probs=134.8

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCC-------------------cCCCCCCCCC
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLT-------------------EIPSLSLATN   63 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~-------------------~~~~~~~l~~   63 (295)
                      +..++.+|.  .+++|++|++++|.++.+|.   .+++|++|++++|.+.+                   .+|.  .+++
T Consensus        70 ~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~--~l~~  142 (622)
T 3g06_A           70 DNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV--LPPG  142 (622)
T ss_dssp             SCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCC--CCTT
T ss_pred             CCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCC--CCCC
Confidence            345555665  46677777777777766665   55666666666665432                   1221  1367


Q ss_pred             CcEeeccccccccccccc---hhcc--------------cCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccC
Q 039126           64 LESLNFQRYTSLLETHSS---IRHL--------------NKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFP  126 (295)
Q Consensus        64 L~~L~l~~~~~~~~~~~~---~~~l--------------~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~  126 (295)
                      |++|++++| .+..+|..   +..+              ++|+.|++++| .++.+|..  +++|+.|++++|. +..+|
T Consensus       143 L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~l~~l~~~--~~~L~~L~L~~N~-l~~l~  217 (622)
T 3g06_A          143 LQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDN-QLASLPTL--PSELYKLWAYNNR-LTSLP  217 (622)
T ss_dssp             CCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSC-CSSCC
T ss_pred             CCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCC-CCCCCCCc--cchhhEEECcCCc-ccccC
Confidence            888888875 33444432   2222              66677777664 34444432  4677888888775 44677


Q ss_pred             cCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcc
Q 039126          127 ELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLY  206 (295)
Q Consensus       127 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~  206 (295)
                      ..+.+|+.|++++|.++.+|   ..+++|+.|++++| .+..+|.   .+++|+.|++++|.+. .+|..+..+  ++|+
T Consensus       218 ~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l--~~L~  287 (622)
T 3g06_A          218 ALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHL--SSET  287 (622)
T ss_dssp             CCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGS--CTTC
T ss_pred             CCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhc--cccC
Confidence            77788999999999999888   46689999999998 5677876   6889999999998766 789999988  9999


Q ss_pred             eeecccccccc
Q 039126          207 DIEAHWCSSLE  217 (295)
Q Consensus       207 ~L~l~~~~~l~  217 (295)
                      .|++++++.-.
T Consensus       288 ~L~L~~N~l~~  298 (622)
T 3g06_A          288 TVNLEGNPLSE  298 (622)
T ss_dssp             EEECCSCCCCH
T ss_pred             EEEecCCCCCC
Confidence            99999976433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.80  E-value=2.9e-20  Score=161.68  Aligned_cols=196  Identities=21%  Similarity=0.272  Sum_probs=154.3

Q ss_pred             CCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCc-CC-CCCCCCCCcEeeccccccccccccchhcccCCcEEcc
Q 039126           16 KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTE-IP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNL   93 (295)
Q Consensus        16 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~-~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   93 (295)
                      ++++.|++++|.+...+..+..+++|++|++++|.+.+. ++ .+..+++|++|++++|......+..+..+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            789999999999887776677899999999999986554 55 4788999999999998655567777888999999999


Q ss_pred             ccCcCCce--eCCcc-cCccccEEeccCC-CCCcc-cC---cCCC-CCceEEccCcc--cc--ccchhhhCCCCCcEEec
Q 039126           94 KHCRSLTN--LSTSI-HLESLKKLILSGC-SNLMS-FP---ELFY-NIKELSLDGTA--IN--ELPSSIEYLSKLVILNL  160 (295)
Q Consensus        94 ~~~~~l~~--l~~~~-~~~~L~~L~l~~~-~~~~~-~~---~~~~-~L~~L~l~~~~--i~--~~~~~~~~~~~L~~L~l  160 (295)
                      ++|..++.  ++... .+++|+.|++++| ..... ++   ..++ +|++|++++|.  ++  .++..+..+++|+.|++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            99866663  44433 4889999999998 55432 23   3456 89999999994  43  67777888999999999


Q ss_pred             CCCcCC-cCcccccCCCCCCCeeeccCCC-CCCCchhhhhccCCCCcceeecccc
Q 039126          161 GNSSRL-EGLPSKICKLKSLQHLNLSCCS-NLESFPNELRNLFPCDLYDIEAHWC  213 (295)
Q Consensus       161 ~~~~~~-~~~p~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~~~L~~L~l~~~  213 (295)
                      ++|..+ ...+..+.++++|++|++++|. ........+..+  ++|++|++++|
T Consensus       230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~  282 (336)
T 2ast_B          230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI--PTLKTLQVFGI  282 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC--TTCCEEECTTS
T ss_pred             CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC--CCCCEEeccCc
Confidence            999744 4566778899999999999985 223333356666  99999999998

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.80  E-value=7.9e-18  Score=152.35  Aligned_cols=140  Identities=19%  Similarity=0.207  Sum_probs=86.2

Q ss_pred             CCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCceeCCcccCccccEEeccC
Q 039126           39 VNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSG  118 (295)
Q Consensus        39 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~  118 (295)
                      ++|++|++++|.+.+ +|++..+++|++|++++| .++.+|..   ..+|++|++++| .++.+|....+++|+.|++++
T Consensus       131 ~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N-~l~~lp~~---~~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~  204 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNN-SLKKLPDL---PPSLEFIAAGNN-QLEELPELQNLPFLTAIYADN  204 (454)
T ss_dssp             TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCS
T ss_pred             CCCCEEECcCCCCCC-CcccCCCCCCCEEECCCC-cCcccCCC---cccccEEECcCC-cCCcCccccCCCCCCEEECCC
Confidence            456666666665543 556666677777777664 33445432   246667777664 344455433477777777777


Q ss_pred             CCCCcccCcCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCC
Q 039126          119 CSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNL  190 (295)
Q Consensus       119 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~  190 (295)
                      |.+. .+|....+|++|++++|.++.+|. ++.+++|+.|++++|. +..+|..   +++|++|++++|.+.
T Consensus       205 N~l~-~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~N~l~  270 (454)
T 1jl5_A          205 NSLK-KLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNL-LKTLPDL---PPSLEALNVRDNYLT  270 (454)
T ss_dssp             SCCS-SCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSC-CSSCCSC---CTTCCEEECCSSCCS
T ss_pred             CcCC-cCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCc-CCccccc---ccccCEEECCCCccc
Confidence            7543 466666677777777777777763 6777777777777763 4445532   355666666665443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.79  E-value=7.1e-20  Score=157.90  Aligned_cols=193  Identities=17%  Similarity=0.170  Sum_probs=153.2

Q ss_pred             CCCCceeEecCCCCcc-ccchhh--cCCCCCcEEecCCCCCCCcCC-CCCCC-----CCCcEeeccccccccccccchhc
Q 039126           14 RPKNLVSPEIPRNSIK-QLWKVV--QRLVNLKSINLNHSEHLTEIP-SLSLA-----TNLESLNFQRYTSLLETHSSIRH   84 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~-~l~~~~--~~l~~L~~L~L~~~~~~~~~~-~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~   84 (295)
                      .+++|++|++++|.+. .+|..+  +.+++|++|++++|.+.+. | .+..+     ++|++|++++|......+..+..
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            4889999999999998 567765  8999999999999998766 5 34444     89999999997655555577999


Q ss_pred             ccCCcEEccccCcCCce--eCCc---ccCccccEEeccCCCCCc--ccCc----CCCCCceEEccCccccccc--hhhhC
Q 039126           85 LNKFVARNLKHCRSLTN--LSTS---IHLESLKKLILSGCSNLM--SFPE----LFYNIKELSLDGTAINELP--SSIEY  151 (295)
Q Consensus        85 l~~L~~L~l~~~~~l~~--l~~~---~~~~~L~~L~l~~~~~~~--~~~~----~~~~L~~L~l~~~~i~~~~--~~~~~  151 (295)
                      +++|++|++++|...+.  ++..   ..+++|++|++++|.+.+  .++.    .+.+|++|++++|.++..+  ..+..
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence            99999999999875543  2222   248999999999997552  3332    3468999999999998654  34566


Q ss_pred             CCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccc
Q 039126          152 LSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCS  214 (295)
Q Consensus       152 ~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~  214 (295)
                      +++|+.|++++|. ++.+|..+.  ++|++|++++|.+.+. |. +..+  ++|++|++++++
T Consensus       252 l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l--~~L~~L~L~~N~  307 (312)
T 1wwl_A          252 PSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDEL--PQVGNLSLKGNP  307 (312)
T ss_dssp             CTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTS--CEEEEEECTTCT
T ss_pred             cCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCCCCCC-hh-HhhC--CCCCEEeccCCC
Confidence            8999999999985 568888776  8999999999887654 65 7777  999999999864

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=8.7e-18  Score=143.31  Aligned_cols=200  Identities=20%  Similarity=0.149  Sum_probs=159.0

Q ss_pred             hhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCceeCCcccCcccc
Q 039126           34 VVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLK  112 (295)
Q Consensus        34 ~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~  112 (295)
                      .++.+++++.++++++.+. .+| .+.  +++++|++++|......+..+..+++|++|++++| .++.++....+++|+
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~   80 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLG   80 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCC
T ss_pred             cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCCCCCCcCC
Confidence            3578899999999999864 555 443  78999999997655555667999999999999995 567777666799999


Q ss_pred             EEeccCCCCCcccCcC---CCCCceEEccCccccccc-hhhhCCCCCcEEecCCCcCCcCcc-cccCCCCCCCeeeccCC
Q 039126          113 KLILSGCSNLMSFPEL---FYNIKELSLDGTAINELP-SSIEYLSKLVILNLGNSSRLEGLP-SKICKLKSLQHLNLSCC  187 (295)
Q Consensus       113 ~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~  187 (295)
                      .|++++|.+ ..+|..   +.+|++|++++|.++.++ ..+..+++|+.|++++|. +..+| ..+..+++|+.|++++|
T Consensus        81 ~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           81 TLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             EEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCC
Confidence            999999864 466664   457889999999999886 568899999999999995 44554 55789999999999998


Q ss_pred             CCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCChh
Q 039126          188 SNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQ  246 (295)
Q Consensus       188 ~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  246 (295)
                      .+.+..+..+..+  ++|++|+++++ .++.++...    ...++|+.+++.+++---+
T Consensus       159 ~l~~l~~~~~~~l--~~L~~L~L~~N-~l~~ip~~~----~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          159 NLTELPAGLLNGL--ENLDTLLLQEN-SLYTIPKGF----FGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCSCCCTTTTTTC--TTCCEEECCSS-CCCCCCTTT----TTTCCCSEEECCSCCBCCS
T ss_pred             cCCccCHHHhcCc--CCCCEEECCCC-cCCccChhh----cccccCCeEEeCCCCccCc
Confidence            8765444445666  99999999986 578887754    4567899999998764433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.79  E-value=3e-18  Score=147.42  Aligned_cols=181  Identities=15%  Similarity=0.268  Sum_probs=151.1

Q ss_pred             CCCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccc
Q 039126            2 HGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSS   81 (295)
Q Consensus         2 ~~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~   81 (295)
                      .++.+.++|.+..+++|++|++++|.+..++. +..+++|++|++++|.+. .++.+..+++|++|++++|. +..++. 
T Consensus        49 ~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~l~~n~-l~~~~~-  124 (308)
T 1h6u_A           49 FGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQ-ITDVTP-  124 (308)
T ss_dssp             TTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS-CCGGGTTCTTCCEEECTTSC-CCCCGG-
T ss_pred             eCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC-CchhhcCCCCCCEEECCCCC-CCCchh-
Confidence            35677788877789999999999999999887 999999999999999854 56789999999999999964 555653 


Q ss_pred             hhcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccCc--CCCCCceEEccCccccccchhhhCCCCCcEEe
Q 039126           82 IRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPE--LFYNIKELSLDGTAINELPSSIEYLSKLVILN  159 (295)
Q Consensus        82 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~  159 (295)
                      +..+++|++|++++| .++.++....+++|+.|++++|.+. .++.  .+.+|++|++++|.++.++. +..+++|++|+
T Consensus       125 l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~  201 (308)
T 1h6u_A          125 LAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVH  201 (308)
T ss_dssp             GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred             hcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCCcCC-CChhhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEE
Confidence            889999999999996 5566665446899999999998654 4443  45588999999999998876 78899999999


Q ss_pred             cCCCcCCcCcccccCCCCCCCeeeccCCCCCC
Q 039126          160 LGNSSRLEGLPSKICKLKSLQHLNLSCCSNLE  191 (295)
Q Consensus       160 l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~  191 (295)
                      +++|. +..++. +..+++|+.|++++|.+.+
T Consensus       202 L~~N~-l~~~~~-l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          202 LKNNQ-ISDVSP-LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CTTSC-CCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred             ccCCc-cCcccc-ccCCCCCCEEEccCCeeec
Confidence            99984 555653 8899999999999987644

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=1.3e-18  Score=158.82  Aligned_cols=198  Identities=16%  Similarity=0.082  Sum_probs=159.3

Q ss_pred             ccchhhcCCC----CCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCceeCC
Q 039126           30 QLWKVVQRLV----NLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLST  104 (295)
Q Consensus        30 ~l~~~~~~l~----~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~  104 (295)
                      .+|..+..+.    +|++|++++|.+.+..| .+..+++|++|++++|......|  +..+++|++|++++| .++.++.
T Consensus        21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~   97 (487)
T 3oja_A           21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV   97 (487)
T ss_dssp             THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE
T ss_pred             hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC
Confidence            4555554444    89999999999877666 69999999999999976444443  889999999999996 5555553


Q ss_pred             cccCccccEEeccCCCCCcccCcCCCCCceEEccCcccccc-chhhhCCCCCcEEecCCCcCCcCcccccC-CCCCCCee
Q 039126          105 SIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINEL-PSSIEYLSKLVILNLGNSSRLEGLPSKIC-KLKSLQHL  182 (295)
Q Consensus       105 ~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~~~p~~l~-~l~~L~~L  182 (295)
                         .++|+.|++++|.+.+..+..+++|+.|++++|.++.+ |..++.+++|+.|++++|...+..|..+. .+++|++|
T Consensus        98 ---~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L  174 (487)
T 3oja_A           98 ---GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL  174 (487)
T ss_dssp             ---CTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred             ---CCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence               38999999999987776677788999999999999966 55788899999999999976666677775 79999999


Q ss_pred             eccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126          183 NLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF  242 (295)
Q Consensus       183 ~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~  242 (295)
                      ++++|.+.+. +... .+  ++|++|+++++ .++.++..+    ..+++|+.|+++++.
T Consensus       175 ~Ls~N~l~~~-~~~~-~l--~~L~~L~Ls~N-~l~~~~~~~----~~l~~L~~L~Ls~N~  225 (487)
T 3oja_A          175 NLQYNFIYDV-KGQV-VF--AKLKTLDLSSN-KLAFMGPEF----QSAAGVTWISLRNNK  225 (487)
T ss_dssp             ECTTSCCCEE-ECCC-CC--TTCCEEECCSS-CCCEECGGG----GGGTTCSEEECTTSC
T ss_pred             ecCCCccccc-cccc-cC--CCCCEEECCCC-CCCCCCHhH----cCCCCccEEEecCCc
Confidence            9999987654 3322 34  99999999986 467776643    578999999999873

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.78  E-value=1.2e-19  Score=160.89  Aligned_cols=229  Identities=13%  Similarity=0.115  Sum_probs=171.2

Q ss_pred             CCCCceeEecCCCCccc-----cchhhcCCCCCcEEecCCCC---CCCcCC-C-------CCCCCCCcEeecccccccc-
Q 039126           14 RPKNLVSPEIPRNSIKQ-----LWKVVQRLVNLKSINLNHSE---HLTEIP-S-------LSLATNLESLNFQRYTSLL-   76 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~L~~~~---~~~~~~-~-------~~~l~~L~~L~l~~~~~~~-   76 (295)
                      .+++|++|++++|.+..     ++..+..+++|++|++++|.   +.+.+| .       +..+++|++|++++|.... 
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            47899999999998875     34557789999999999974   333444 2       3789999999999976554 


Q ss_pred             ---ccccchhcccCCcEEccccCcCCceeCCcc-----cC---------ccccEEeccCCCCC-cccC---c---CCCCC
Q 039126           77 ---ETHSSIRHLNKFVARNLKHCRSLTNLSTSI-----HL---------ESLKKLILSGCSNL-MSFP---E---LFYNI  132 (295)
Q Consensus        77 ---~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~-----~~---------~~L~~L~l~~~~~~-~~~~---~---~~~~L  132 (295)
                         .++..+..+++|++|++++|..-...+..+     .+         ++|+.|++++|.+. ..++   .   ...+|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence               367778999999999999975422111111     13         89999999999865 3344   2   45589


Q ss_pred             ceEEccCcccc--c---c-chhhhCCCCCcEEecCCCcCC----cCcccccCCCCCCCeeeccCCCCCCC----chhhhh
Q 039126          133 KELSLDGTAIN--E---L-PSSIEYLSKLVILNLGNSSRL----EGLPSKICKLKSLQHLNLSCCSNLES----FPNELR  198 (295)
Q Consensus       133 ~~L~l~~~~i~--~---~-~~~~~~~~~L~~L~l~~~~~~----~~~p~~l~~l~~L~~L~l~~~~~~~~----~~~~l~  198 (295)
                      ++|++++|.++  .   + +..+..+++|+.|++++|...    ..+|..+..+++|++|++++|.+.+.    ++..+.
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  269 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS  269 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence            99999999987  2   3 337788999999999999642    56777889999999999999987765    455554


Q ss_pred             ccCCCCcceeeccccccccc-----ccccchhhhccCCcccEEeecCCCCChh
Q 039126          199 NLFPCDLYDIEAHWCSSLET-----LSGLSIIFTKISRNTQSFDFINCFKLHQ  246 (295)
Q Consensus       199 ~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~~~~~L~~L~l~~c~~l~~  246 (295)
                      ....++|++|++++|. ++.     ++...   ...+++|++|++++|+--..
T Consensus       270 ~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l---~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          270 KLENIGLQTLRLQYNE-IELDAVRTLKTVI---DEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             TCSSCCCCEEECCSSC-CBHHHHHHHHHHH---HHHCTTCCEEECTTSBSCTT
T ss_pred             hccCCCeEEEECcCCc-CCHHHHHHHHHHH---HhcCCCceEEEccCCcCCcc
Confidence            3112999999999975 454     44321   13579999999999864433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.76  E-value=2.4e-17  Score=137.60  Aligned_cols=173  Identities=20%  Similarity=0.217  Sum_probs=130.0

Q ss_pred             CCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccc
Q 039126           16 KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLK   94 (295)
Q Consensus        16 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   94 (295)
                      ...+.++++++.++.+|..+.  ..++.|++++|.+.+..+ .+..+++|++|++++|......+..+..+++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            456788899888888887655  588999999998776666 58889999999999865444444557888999999998


Q ss_pred             cCcCCceeCCcc--cCccccEEeccCCCCCcccCc----CCCCCceEEccCccccccch-hhhCCCCCcEEecCCCcCCc
Q 039126           95 HCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE----LFYNIKELSLDGTAINELPS-SIEYLSKLVILNLGNSSRLE  167 (295)
Q Consensus        95 ~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~~~~  167 (295)
                      +| .++.++...  .+++|+.|++++|.+. .++.    .+.+|++|++++|.++.++. .++.+++|++|++++|....
T Consensus        92 ~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           92 NN-QLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             TS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CC-cccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            85 455555443  4788888988888654 4443    24577888888888887766 57788889999999885444


Q ss_pred             CcccccCCCCCCCeeeccCCCCCCC
Q 039126          168 GLPSKICKLKSLQHLNLSCCSNLES  192 (295)
Q Consensus       168 ~~p~~l~~l~~L~~L~l~~~~~~~~  192 (295)
                      ..+..+..+++|+.|++++|.+...
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCHHHHhCCCCCCEEEeeCCceeCC
Confidence            3445678888999999998887654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.76  E-value=1.8e-18  Score=148.88  Aligned_cols=192  Identities=17%  Similarity=0.128  Sum_probs=150.5

Q ss_pred             CCCceeEecCCCCccc-cchhh--cCCCCCcEEecCCCCCCCcCCC-----CCCCCCCcEeeccccccccccccchhccc
Q 039126           15 PKNLVSPEIPRNSIKQ-LWKVV--QRLVNLKSINLNHSEHLTEIPS-----LSLATNLESLNFQRYTSLLETHSSIRHLN   86 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~-l~~~~--~~l~~L~~L~L~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~~~~~~~l~   86 (295)
                      .++|++|++++|.+.. .|..+  ..+++|++|++++|.+.+..+.     +..+++|++|++++|......+..+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            4669999999999885 45655  8899999999999998765552     45799999999999766555556788999


Q ss_pred             CCcEEccccCcCCce--eCCc---ccCccccEEeccCCCCCcccCc-------CCCCCceEEccCcccccc-chhhhCC-
Q 039126           87 KFVARNLKHCRSLTN--LSTS---IHLESLKKLILSGCSNLMSFPE-------LFYNIKELSLDGTAINEL-PSSIEYL-  152 (295)
Q Consensus        87 ~L~~L~l~~~~~l~~--l~~~---~~~~~L~~L~l~~~~~~~~~~~-------~~~~L~~L~l~~~~i~~~-~~~~~~~-  152 (295)
                      +|++|++++|.....  ++..   ..+++|++|++++|++. .++.       .+.+|++|++++|.++.. |..+..+ 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            999999999765442  2222   24889999999999753 3222       347899999999999966 7666665 


Q ss_pred             --CCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccc
Q 039126          153 --SKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCS  214 (295)
Q Consensus       153 --~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~  214 (295)
                        ++|++|++++|. +..+|..+.  ++|++|++++|.+.+ +|. +..+  ++|+.|++++++
T Consensus       249 ~~~~L~~L~Ls~N~-l~~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l--~~L~~L~L~~N~  305 (310)
T 4glp_A          249 WSSALNSLNLSFAG-LEQVPKGLP--AKLRVLDLSSNRLNR-APQ-PDEL--PEVDNLTLDGNP  305 (310)
T ss_dssp             CCTTCCCEECCSSC-CCSCCSCCC--SCCSCEECCSCCCCS-CCC-TTSC--CCCSCEECSSTT
T ss_pred             CcCcCCEEECCCCC-CCchhhhhc--CCCCEEECCCCcCCC-Cch-hhhC--CCccEEECcCCC
Confidence              699999999984 668887774  899999999998765 333 4555  999999999864

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=2.3e-17  Score=152.64  Aligned_cols=182  Identities=15%  Similarity=0.171  Sum_probs=128.1

Q ss_pred             CCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEcccc
Q 039126           16 KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKH   95 (295)
Q Consensus        16 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   95 (295)
                      .+++.|++++|.++.+|..+  +++|++|++++|.+. .+|  ..+++|++|++++| .++.+|. +..  +|++|++++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred             CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence            37888888888888777655  367888888888765 566  55778888888885 4445666 433  788888887


Q ss_pred             CcCCceeCCcccCccccEEeccCCCCCcccCcCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCC
Q 039126           96 CRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICK  175 (295)
Q Consensus        96 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~  175 (295)
                      | .++.+|.  .+++|+.|++++|.+. .+|..+.+|++|++++|.++.+|. +.  ++|+.|++++| .+..+|. +..
T Consensus       130 N-~l~~lp~--~l~~L~~L~Ls~N~l~-~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~-~~~  200 (571)
T 3cvr_A          130 N-QLTMLPE--LPALLEYINADNNQLT-MLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN-LLESLPA-VPV  200 (571)
T ss_dssp             S-CCSCCCC--CCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS-CCSSCCC-CC-
T ss_pred             C-cCCCCCC--cCccccEEeCCCCccC-cCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC-CCCchhh-HHH
Confidence            5 4555666  5778888888887644 477766778888888888887776 54  78888888887 4556766 543


Q ss_pred             CCCC-------CeeeccCCCCCCCchhhhhccCCCCcceeeccccccccccc
Q 039126          176 LKSL-------QHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLS  220 (295)
Q Consensus       176 l~~L-------~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~  220 (295)
                        +|       +.|++++|.+. .+|..+..+  ++|++|++++++.-..++
T Consensus       201 --~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l--~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          201 --RNHHSEETEIFFRCRENRIT-HIPENILSL--DPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             ---------CCEEEECCSSCCC-CCCGGGGGS--CTTEEEECCSSSCCHHHH
T ss_pred             --hhhcccccceEEecCCCcce-ecCHHHhcC--CCCCEEEeeCCcCCCcCH
Confidence              66       88888887654 577777776  888888888765433333

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=3.1e-17  Score=151.72  Aligned_cols=166  Identities=18%  Similarity=0.211  Sum_probs=70.4

Q ss_pred             CCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEcccc
Q 039126           16 KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKH   95 (295)
Q Consensus        16 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   95 (295)
                      ++|+.|++++|.++.+|   ..+++|++|++++|.+.+ +|.+..  +|++|++++| .+..+|.   .+++|+.|++++
T Consensus        80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~  149 (571)
T 3cvr_A           80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPELPA--SLKHLDVDNN-QLTMLPE---LPALLEYINADN  149 (571)
T ss_dssp             TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECCS
T ss_pred             CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cchhhc--CCCEEECCCC-cCCCCCC---cCccccEEeCCC
Confidence            44444555444444444   334444455554444333 333222  4444444443 2222333   344444444444


Q ss_pred             CcCCceeCCcccCccccEEeccCCCCCcccCcCCCCCceEEccCccccccchhhhCCCCC-------cEEecCCCcCCcC
Q 039126           96 CRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKL-------VILNLGNSSRLEG  168 (295)
Q Consensus        96 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L-------~~L~l~~~~~~~~  168 (295)
                      | .++.+|.  .+++|+.|++++|.+. .+|....+|++|++++|.++.+|. +..  +|       +.|++++| .+..
T Consensus       150 N-~l~~lp~--~l~~L~~L~Ls~N~L~-~lp~l~~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~  221 (571)
T 3cvr_A          150 N-QLTMLPE--LPTSLEVLSVRNNQLT-FLPELPESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCREN-RITH  221 (571)
T ss_dssp             S-CCSCCCC--CCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSSCCC-CC----------CCEEEECCSS-CCCC
T ss_pred             C-ccCcCCC--cCCCcCEEECCCCCCC-CcchhhCCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCC-ccee
Confidence            2 2233333  2344444444444322 233322344444454444444443 221  33       44444444 2334


Q ss_pred             cccccCCCCCCCeeeccCCCCCCCchhhhhc
Q 039126          169 LPSKICKLKSLQHLNLSCCSNLESFPNELRN  199 (295)
Q Consensus       169 ~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~  199 (295)
                      +|..+..+++|+.|++++|.+.+.+|..+..
T Consensus       222 lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          222 IPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            4444444444445555444444444444433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.73  E-value=1.9e-18  Score=151.99  Aligned_cols=229  Identities=15%  Similarity=0.106  Sum_probs=161.2

Q ss_pred             CCCCC-CCCceeEecCCCCccccc-----hhhcCCC-CCcEEecCCCCCCCcCC-CCCCC-----CCCcEeecccccccc
Q 039126           10 SSIIR-PKNLVSPEIPRNSIKQLW-----KVVQRLV-NLKSINLNHSEHLTEIP-SLSLA-----TNLESLNFQRYTSLL   76 (295)
Q Consensus        10 p~~~~-~~~L~~L~l~~~~~~~l~-----~~~~~l~-~L~~L~L~~~~~~~~~~-~~~~l-----~~L~~L~l~~~~~~~   76 (295)
                      |.+.. .++|++|++++|.++..+     ..+..++ +|++|++++|.+....+ .+..+     ++|++|++++|....
T Consensus        15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~   94 (362)
T 3goz_A           15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY   94 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence            33444 566999999999998765     5678888 89999999998766555 34433     999999999986544


Q ss_pred             ccccc----hhcc-cCCcEEccccCcCCceeCCcc------c-CccccEEeccCCCCCcc----cCc---CC-CCCceEE
Q 039126           77 ETHSS----IRHL-NKFVARNLKHCRSLTNLSTSI------H-LESLKKLILSGCSNLMS----FPE---LF-YNIKELS  136 (295)
Q Consensus        77 ~~~~~----~~~l-~~L~~L~l~~~~~l~~l~~~~------~-~~~L~~L~l~~~~~~~~----~~~---~~-~~L~~L~  136 (295)
                      ..+..    +..+ ++|++|++++|. ++..+...      . .++|++|++++|.+...    ++.   .. .+|++|+
T Consensus        95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~  173 (362)
T 3goz_A           95 KSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN  173 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred             HHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence            44443    3444 899999999975 44444321      1 36999999999976532    222   22 3899999


Q ss_pred             ccCccccccc-h----hhhCC-CCCcEEecCCCcCCcC-----cccccCC-CCCCCeeeccCCCCCCCchhhh----hcc
Q 039126          137 LDGTAINELP-S----SIEYL-SKLVILNLGNSSRLEG-----LPSKICK-LKSLQHLNLSCCSNLESFPNEL----RNL  200 (295)
Q Consensus       137 l~~~~i~~~~-~----~~~~~-~~L~~L~l~~~~~~~~-----~p~~l~~-l~~L~~L~l~~~~~~~~~~~~l----~~~  200 (295)
                      +++|.++... .    .+... ++|+.|++++|. ++.     ++..+.. .++|++|++++|.+.+..+..+    ..+
T Consensus       174 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l  252 (362)
T 3goz_A          174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL  252 (362)
T ss_dssp             CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT
T ss_pred             ecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC
Confidence            9999997443 2    34455 599999999995 443     5555555 4599999999998877665443    334


Q ss_pred             CCCCcceeeccccccccccccc----chhhhccCCcccEEeecCCCC
Q 039126          201 FPCDLYDIEAHWCSSLETLSGL----SIIFTKISRNTQSFDFINCFK  243 (295)
Q Consensus       201 ~~~~L~~L~l~~~~~l~~~~~~----~~~~~~~~~~L~~L~l~~c~~  243 (295)
                        ++|++|++++|. +..+...    .......+++|++|+++++.-
T Consensus       253 --~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l  296 (362)
T 3goz_A          253 --KHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKEI  296 (362)
T ss_dssp             --TTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred             --CCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence              899999999975 2222221    011124678899999999863

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=2.8e-17  Score=140.24  Aligned_cols=167  Identities=22%  Similarity=0.270  Sum_probs=81.8

Q ss_pred             CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccc
Q 039126           15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLK   94 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   94 (295)
                      +++|+.|++++|.+..++ .++.+++|++|++++|.+.+.. .+..+++|++|++++|. ++.++ .+..+++|++|+++
T Consensus        45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~  120 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSLE  120 (291)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEECT
T ss_pred             cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCc-ccccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEECC
Confidence            444555555555544443 2444555555555555433222 24445555555555432 22222 24444444444444


Q ss_pred             cCcCCceeCCcccCccccEEeccCCCCCcccCcCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccC
Q 039126           95 HCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKIC  174 (295)
Q Consensus        95 ~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~  174 (295)
                      +| .++.++....++                     +|++|++++|.++.+ ..+..+++|+.|++++|. +..++. +.
T Consensus       121 ~n-~i~~~~~l~~l~---------------------~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~  175 (291)
T 1h6t_A          121 HN-GISDINGLVHLP---------------------QLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LA  175 (291)
T ss_dssp             TS-CCCCCGGGGGCT---------------------TCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG-GT
T ss_pred             CC-cCCCChhhcCCC---------------------CCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh-hc
Confidence            43 222222222234                     455555555555554 345566666666666663 344433 66


Q ss_pred             CCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccc
Q 039126          175 KLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCS  214 (295)
Q Consensus       175 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~  214 (295)
                      .+++|+.|++++|.+.+ ++. +..+  ++|+.|++++++
T Consensus       176 ~l~~L~~L~L~~N~i~~-l~~-l~~l--~~L~~L~l~~n~  211 (291)
T 1h6t_A          176 GLTKLQNLYLSKNHISD-LRA-LAGL--KNLDVLELFSQE  211 (291)
T ss_dssp             TCTTCCEEECCSSCCCB-CGG-GTTC--TTCSEEEEEEEE
T ss_pred             CCCccCEEECCCCcCCC-Chh-hccC--CCCCEEECcCCc
Confidence            66666666666665433 332 4444  666666666643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.71  E-value=8.6e-17  Score=140.78  Aligned_cols=216  Identities=16%  Similarity=0.172  Sum_probs=167.2

Q ss_pred             eeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeecccccccccccc-chhcccCCcEEcccc
Q 039126           19 VSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETHS-SIRHLNKFVARNLKH   95 (295)
Q Consensus        19 ~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~   95 (295)
                      ++++.++++++++|..+  .+++++|+|++|.+. .+|  .|..+++|++|++++|...+.++. .+.++++++.+...+
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            56788889999999766  368999999999865 555  489999999999999887787775 478899988766666


Q ss_pred             CcCCceeCCcc--cCccccEEeccCCCCCcccCc-CC---CCCceEEccC-ccccccchh-hhCC-CCCcEEecCCCcCC
Q 039126           96 CRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE-LF---YNIKELSLDG-TAINELPSS-IEYL-SKLVILNLGNSSRL  166 (295)
Q Consensus        96 ~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~-~~---~~L~~L~l~~-~~i~~~~~~-~~~~-~~L~~L~l~~~~~~  166 (295)
                      +..++.++...  .+++|++|++++|.+. .+|. .+   .++..+++.+ +.+..++.. +..+ ..++.|++++| .+
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i  166 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GI  166 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CC
T ss_pred             CCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cc
Confidence            57788886554  4899999999998754 4443 22   2455777766 467777653 4444 56899999998 57


Q ss_pred             cCcccccCCCCCCCeeeccCCCCCCCchhh-hhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCCh
Q 039126          167 EGLPSKICKLKSLQHLNLSCCSNLESFPNE-LRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLH  245 (295)
Q Consensus       167 ~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  245 (295)
                      +.+|..+....+|+.+++.+++..+.+|.. +..+  ++|+.|+++++ .++.++.      ..+.+|+.|.+.++.+++
T Consensus       167 ~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l--~~L~~LdLs~N-~l~~lp~------~~~~~L~~L~~l~~~~l~  237 (350)
T 4ay9_X          167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA--SGPVILDISRT-RIHSLPS------YGLENLKKLRARSTYNLK  237 (350)
T ss_dssp             CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTE--ECCSEEECTTS-CCCCCCS------SSCTTCCEEECTTCTTCC
T ss_pred             cCCChhhccccchhHHhhccCCcccCCCHHHhccC--cccchhhcCCC-CcCccCh------hhhccchHhhhccCCCcC
Confidence            778877777889999999988888888865 5677  99999999986 6898887      567788888887777666


Q ss_pred             hhh
Q 039126          246 QNV  248 (295)
Q Consensus       246 ~~~  248 (295)
                      ..+
T Consensus       238 ~lP  240 (350)
T 4ay9_X          238 KLP  240 (350)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.71  E-value=5.2e-16  Score=129.43  Aligned_cols=162  Identities=21%  Similarity=0.238  Sum_probs=130.8

Q ss_pred             CCCCCCcCCCCCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccc
Q 039126            2 HGCPFKSLSSIIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETH   79 (295)
Q Consensus         2 ~~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~   79 (295)
                      .+..++++|..+. ++++.|++++|.+..++ ..++++++|++|++++|.+.+..+ .+..+++|++|++++|......+
T Consensus        22 ~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  100 (251)
T 3m19_A           22 QGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL  100 (251)
T ss_dssp             TTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             CCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh
Confidence            3456777776543 78999999999999876 468999999999999999877666 48999999999999965444444


Q ss_pred             cchhcccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCCcccCc-C---CCCCceEEccCccccccch-hhhCC
Q 039126           80 SSIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE-L---FYNIKELSLDGTAINELPS-SIEYL  152 (295)
Q Consensus        80 ~~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~-~---~~~L~~L~l~~~~i~~~~~-~~~~~  152 (295)
                      ..+..+++|++|++++| .++.++...  .+++|+.|++++|.+. .++. .   +.+|++|++++|.++.++. .+..+
T Consensus       101 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  178 (251)
T 3m19_A          101 GVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL  178 (251)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             hHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC
Confidence            56789999999999995 566776653  4899999999999754 4443 3   3578899999999997765 67889


Q ss_pred             CCCcEEecCCCcCC
Q 039126          153 SKLVILNLGNSSRL  166 (295)
Q Consensus       153 ~~L~~L~l~~~~~~  166 (295)
                      ++|+.|++++|...
T Consensus       179 ~~L~~L~l~~N~~~  192 (251)
T 3m19_A          179 GKLQTITLFGNQFD  192 (251)
T ss_dssp             TTCCEEECCSCCBC
T ss_pred             CCCCEEEeeCCcee
Confidence            99999999998643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.70  E-value=1.7e-17  Score=147.16  Aligned_cols=226  Identities=12%  Similarity=0.058  Sum_probs=163.5

Q ss_pred             CCCCceeEecCCCCcc----ccchh-------hcCCCCCcEEecCCCCCCCc----CC-CCCCCCCCcEeeccccccccc
Q 039126           14 RPKNLVSPEIPRNSIK----QLWKV-------VQRLVNLKSINLNHSEHLTE----IP-SLSLATNLESLNFQRYTSLLE   77 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~----~l~~~-------~~~l~~L~~L~L~~~~~~~~----~~-~~~~l~~L~~L~l~~~~~~~~   77 (295)
                      .+++|++|+|++|.+.    .+|..       +..+++|++|++++|.+...    ++ .+..+++|++|++++|.....
T Consensus        58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~  137 (386)
T 2ca6_A           58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ  137 (386)
T ss_dssp             TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred             hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence            5899999999998554    23444       47899999999999998663    44 478899999999999865332


Q ss_pred             ----cccchhcc---------cCCcEEccccCcCC-ceeC---Ccc-cCccccEEeccCCCCCcc-----cC---cCCCC
Q 039126           78 ----THSSIRHL---------NKFVARNLKHCRSL-TNLS---TSI-HLESLKKLILSGCSNLMS-----FP---ELFYN  131 (295)
Q Consensus        78 ----~~~~~~~l---------~~L~~L~l~~~~~l-~~l~---~~~-~~~~L~~L~l~~~~~~~~-----~~---~~~~~  131 (295)
                          ++..+..+         ++|++|++++|..- ..++   ..+ .+++|+.|++++|.+...     .+   ....+
T Consensus       138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~  217 (386)
T 2ca6_A          138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE  217 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred             HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence                33334455         89999999997543 2233   122 378999999999976521     22   24568


Q ss_pred             CceEEccCccc-----cccchhhhCCCCCcEEecCCCcCCcC----ccccc--CCCCCCCeeeccCCCCCC----Cchhh
Q 039126          132 IKELSLDGTAI-----NELPSSIEYLSKLVILNLGNSSRLEG----LPSKI--CKLKSLQHLNLSCCSNLE----SFPNE  196 (295)
Q Consensus       132 L~~L~l~~~~i-----~~~~~~~~~~~~L~~L~l~~~~~~~~----~p~~l--~~l~~L~~L~l~~~~~~~----~~~~~  196 (295)
                      |++|++++|.+     ..+|..+..+++|++|++++|.....    ++..+  +.+++|++|++++|.+.+    .+|..
T Consensus       218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~  297 (386)
T 2ca6_A          218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV  297 (386)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred             ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH
Confidence            99999999999     46788888999999999999964433    45556  459999999999998877    47887


Q ss_pred             h-hccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126          197 L-RNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF  242 (295)
Q Consensus       197 l-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~  242 (295)
                      + ..+  ++|++|++++|. ++........+...+++++...+..-.
T Consensus       298 l~~~l--~~L~~L~l~~N~-l~~~~~~~~~l~~~l~~~~~~~l~~~d  341 (386)
T 2ca6_A          298 IDEKM--PDLLFLELNGNR-FSEEDDVVDEIREVFSTRGRGELDELD  341 (386)
T ss_dssp             HHHHC--TTCCEEECTTSB-SCTTSHHHHHHHHHHHHHTCCEECCCC
T ss_pred             HHhcC--CCceEEEccCCc-CCcchhHHHHHHHHhhhcCcchhhhcc
Confidence            7 546  999999999975 444332122333456666655554443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=9.1e-17  Score=149.96  Aligned_cols=174  Identities=22%  Similarity=0.273  Sum_probs=120.5

Q ss_pred             CCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCC
Q 039126            9 LSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKF   88 (295)
Q Consensus         9 ~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (295)
                      +.....+++|+.|++++|.+..++ .++.|++|+.|+|++|.+.+ ++.+..+++|++|++++| .+..++ .+..+++|
T Consensus        36 ~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L  111 (605)
T 1m9s_A           36 AVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD-IKPLTNLKNLGWLFLDEN-KIKDLS-SLKDLKKL  111 (605)
T ss_dssp             EECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSS-CCCCCT-TSTTCTTC
T ss_pred             ccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCC-ChhhccCCCCCEEECcCC-CCCCCh-hhccCCCC
Confidence            333335777888888888877775 47778888888888887544 334777888888888875 344444 57778888


Q ss_pred             cEEccccCcCCceeCCcccCccccEEeccCCCCCcccC--cCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCC
Q 039126           89 VARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFP--ELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRL  166 (295)
Q Consensus        89 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~  166 (295)
                      +.|++++| .+..++....+++|+.|+|++|.+.+ ++  ..+.+|+.|++++|.+..++. +..+++|+.|++++| .+
T Consensus       112 ~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~i  187 (605)
T 1m9s_A          112 KSLSLEHN-GISDINGLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN-HI  187 (605)
T ss_dssp             CEEECTTS-CCCCCGGGGGCTTCSEEECCSSCCCC-CGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CC
T ss_pred             CEEEecCC-CCCCCccccCCCccCEEECCCCccCC-chhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCC-CC
Confidence            88888875 34455544457788888888876433 32  234567788888888776655 777788888888877 34


Q ss_pred             cCcccccCCCCCCCeeeccCCCCCC
Q 039126          167 EGLPSKICKLKSLQHLNLSCCSNLE  191 (295)
Q Consensus       167 ~~~p~~l~~l~~L~~L~l~~~~~~~  191 (295)
                      ..+| .+..+++|+.|++++|.+.+
T Consensus       188 ~~l~-~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          188 SDLR-ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred             CCCh-HHccCCCCCEEEccCCcCcC
Confidence            5554 47778888888888776554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.69  E-value=1.3e-17  Score=151.00  Aligned_cols=60  Identities=13%  Similarity=0.201  Sum_probs=33.2

Q ss_pred             CCCCceeEecCCCCcccc-chh-hcCCC----CCcEEecCCCCCCC----cCC-CCCCCCCCcEeeccccc
Q 039126           14 RPKNLVSPEIPRNSIKQL-WKV-VQRLV----NLKSINLNHSEHLT----EIP-SLSLATNLESLNFQRYT   73 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~l-~~~-~~~l~----~L~~L~L~~~~~~~----~~~-~~~~l~~L~~L~l~~~~   73 (295)
                      .+++|++|++++|.+.+. +.. ...+.    +|++|++++|.+..    .++ .+..+++|++|++++|.
T Consensus        54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~  124 (461)
T 1z7x_W           54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  124 (461)
T ss_dssp             TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence            356667777776666532 222 23343    56667776666543    223 35666666666666654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.68  E-value=1e-15  Score=143.56  Aligned_cols=225  Identities=16%  Similarity=0.137  Sum_probs=140.2

Q ss_pred             CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCc--CC-CCCCCCCCcEeeccccccccccccchhcccCCcEE
Q 039126           15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTE--IP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVAR   91 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~--~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   91 (295)
                      ++.++.+++..+.+...+ ....++.|+.|+++.|.+...  .+ .+..+.+|+++++..+. ....+..+..+++|+.+
T Consensus       348 l~~L~~l~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l  425 (635)
T 4g8a_A          348 LKSLKRLTFTSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHL  425 (635)
T ss_dssp             CTTCCEEEEESCCSCCBC-CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEE
T ss_pred             chhhhhcccccccCCCCc-ccccccccccchhhccccccccccccchhhhhhhhhhhccccc-cccccccccccccccch
Confidence            566777777776555433 234577777777777765332  22 24556677777777643 33444456677777777


Q ss_pred             ccccCcCCceeCCcc--cCccccEEeccCCCCCcccCcC---CCCCceEEccCcccc--ccchhhhCCCCCcEEecCCCc
Q 039126           92 NLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPEL---FYNIKELSLDGTAIN--ELPSSIEYLSKLVILNLGNSS  164 (295)
Q Consensus        92 ~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~i~--~~~~~~~~~~~L~~L~l~~~~  164 (295)
                      ++.++......+...  .+.+++.++++.|......+..   ...++.|++++|.+.  ..|..+..+++|+.|++++|.
T Consensus       426 ~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~  505 (635)
T 4g8a_A          426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  505 (635)
T ss_dssp             ECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             hhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc
Confidence            777654433333222  3677777777777654443332   346677777777643  345667777888888888875


Q ss_pred             CCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCC
Q 039126          165 RLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKL  244 (295)
Q Consensus       165 ~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l  244 (295)
                      ..+..|..+.++++|++|++++|.+.+..+..+..+  ++|++|+++++. ++.++....  ....++|++|+++++|--
T Consensus       506 L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l--~~L~~L~Ls~N~-l~~~~~~~l--~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          506 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL--NSLQVLDYSLNH-IMTSKKQEL--QHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTC--TTCCEEECTTSC-CCBCCSSCT--TCCCTTCCEEECTTCCBC
T ss_pred             cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCC--CCCCEEECCCCc-CCCCCHHHH--HhhhCcCCEEEeeCCCCc
Confidence            444456677788888888888877766666667776  788888888754 455443211  122367888888776543


Q ss_pred             hh
Q 039126          245 HQ  246 (295)
Q Consensus       245 ~~  246 (295)
                      -+
T Consensus       581 C~  582 (635)
T 4g8a_A          581 CT  582 (635)
T ss_dssp             CS
T ss_pred             cc
Confidence            33

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.68  E-value=2.6e-17  Score=144.76  Aligned_cols=220  Identities=13%  Similarity=0.080  Sum_probs=156.4

Q ss_pred             eEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCC-----CCCCCC-CCcEeeccccccccccccchhcc-----cC
Q 039126           20 SPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIP-----SLSLAT-NLESLNFQRYTSLLETHSSIRHL-----NK   87 (295)
Q Consensus        20 ~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~-----~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~   87 (295)
                      .+++++|.+++. |..+....+|++|++++|.+....+     .+..++ +|++|++++|......+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            467889998865 4445666669999999998655443     266788 89999999986555545555554     99


Q ss_pred             CcEEccccCcCCceeCCc-c-----cC-ccccEEeccCCCCCcccCcC--------CCCCceEEccCcccc-----ccch
Q 039126           88 FVARNLKHCRSLTNLSTS-I-----HL-ESLKKLILSGCSNLMSFPEL--------FYNIKELSLDGTAIN-----ELPS  147 (295)
Q Consensus        88 L~~L~l~~~~~l~~l~~~-~-----~~-~~L~~L~l~~~~~~~~~~~~--------~~~L~~L~l~~~~i~-----~~~~  147 (295)
                      |++|++++|. ++..+.. +     .+ ++|+.|++++|.+....+..        ..+|++|++++|.++     .++.
T Consensus        82 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           82 VTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             CCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             ccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            9999999975 4433322 1     23 79999999999754332221        248999999999988     4455


Q ss_pred             hhhCCC-CCcEEecCCCcCCcCcccc----cCCC-CCCCeeeccCCCCCCC----chhhhhccCCCCcceeecccccccc
Q 039126          148 SIEYLS-KLVILNLGNSSRLEGLPSK----ICKL-KSLQHLNLSCCSNLES----FPNELRNLFPCDLYDIEAHWCSSLE  217 (295)
Q Consensus       148 ~~~~~~-~L~~L~l~~~~~~~~~p~~----l~~l-~~L~~L~l~~~~~~~~----~~~~l~~~~~~~L~~L~l~~~~~l~  217 (295)
                      .+..++ +|++|++++|......+..    +..+ ++|++|++++|.+.+.    ++..+... +++|++|+++++. ++
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~-~~~L~~L~Ls~N~-l~  238 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI-PNHVVSLNLCLNC-LH  238 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS-CTTCCEEECCSSC-CC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC-CCCceEEECcCCC-CC
Confidence            566665 9999999999644444433    4455 5999999999987664    45555542 3699999999974 56


Q ss_pred             ccccc-chhhhccCCcccEEeecCCC
Q 039126          218 TLSGL-SIIFTKISRNTQSFDFINCF  242 (295)
Q Consensus       218 ~~~~~-~~~~~~~~~~L~~L~l~~c~  242 (295)
                      ..+.. .......+++|++|++++|.
T Consensus       239 ~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          239 GPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             CCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             cHHHHHHHHHHhcCCCccEEEeccCC
Confidence            55431 12223578899999999984

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.67  E-value=6.7e-16  Score=125.01  Aligned_cols=171  Identities=15%  Similarity=0.136  Sum_probs=106.5

Q ss_pred             eeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc-chhcccCCcEEccccC
Q 039126           19 VSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS-SIRHLNKFVARNLKHC   96 (295)
Q Consensus        19 ~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~   96 (295)
                      +.++.+++.++.+|..+  .++|++|++++|.+.+..+ .+..+++|++|++++| .++.++. .+..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC
Confidence            35556666666665433  3466667776666543333 2566666777777664 3334443 3456666777777664


Q ss_pred             cCCceeCCcc--cCccccEEeccCCCCCcccCc---CCCCCceEEccCccccccchh-hhCCCCCcEEecCCCcCCcCcc
Q 039126           97 RSLTNLSTSI--HLESLKKLILSGCSNLMSFPE---LFYNIKELSLDGTAINELPSS-IEYLSKLVILNLGNSSRLEGLP  170 (295)
Q Consensus        97 ~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~~~~~~~~~p  170 (295)
                       .++.++...  .+++|+.|++++|.+.+..+.   .+.+|++|++++|.++.++.. +..+++|+.|++++|.      
T Consensus        87 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~------  159 (208)
T 2o6s_A           87 -QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP------  159 (208)
T ss_dssp             -CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC------
T ss_pred             -cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC------
Confidence             344444432  366777777776654322222   234667777777777766654 6778888889888884      


Q ss_pred             cccCCCCCCCeeeccCCCCCCCchhhhhcc
Q 039126          171 SKICKLKSLQHLNLSCCSNLESFPNELRNL  200 (295)
Q Consensus       171 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~  200 (295)
                       ..+.++.|+.|+++.|.+.+.+|..++.+
T Consensus       160 -~~~~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          160 -WDCTCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             -BCCCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             -eecCCCCHHHHHHHHHhCCceeeccCccc
Confidence             23457788888888888888888877665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=5.8e-19  Score=163.72  Aligned_cols=208  Identities=16%  Similarity=0.167  Sum_probs=146.0

Q ss_pred             CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEc-
Q 039126           14 RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARN-   92 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~-   92 (295)
                      ..++|+.|+|++|.++.+|..++.|++|+.|++++|......|.          .+..++..+..|..+..+++|+.|+ 
T Consensus       347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~----------ll~~~~~~~~~~~~l~~l~~L~~L~~  416 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL----------LMRALDPLLYEKETLQYFSTLKAVDP  416 (567)
T ss_dssp             TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH----------HHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred             cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHH----------HHHhcccccCCHHHHHHHHhcccCcc
Confidence            47778888888888888888888888888888765531111110          0011123334455566667777766 


Q ss_pred             cccCcCCceeCCc---------ccCccccEEeccCCCCCcccCc--CCCCCceEEccCccccccchhhhCCCCCcEEecC
Q 039126           93 LKHCRSLTNLSTS---------IHLESLKKLILSGCSNLMSFPE--LFYNIKELSLDGTAINELPSSIEYLSKLVILNLG  161 (295)
Q Consensus        93 l~~~~~l~~l~~~---------~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~  161 (295)
                      ++. ..+..++..         .....|+.|++++|.+ ..+|.  .+.+|+.|++++|.++.+|..++.+++|+.|+++
T Consensus       417 l~~-n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l-~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls  494 (567)
T 1dce_A          417 MRA-AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQAS  494 (567)
T ss_dssp             GGH-HHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCC-SSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECC
T ss_pred             hhh-cccchhhhhhhhcccccccCccCceEEEecCCCC-CCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECC
Confidence            333 222222210         0124688999999864 44665  2337889999999999999999999999999999


Q ss_pred             CCcCCcCcccccCCCCCCCeeeccCCCCCCCc-hhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEee
Q 039126          162 NSSRLEGLPSKICKLKSLQHLNLSCCSNLESF-PNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDF  238 (295)
Q Consensus       162 ~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l  238 (295)
                      +|. +..+| .++++++|++|++++|.+.+.. |..+..+  ++|+.|++++++ ++.++.........+++|+.|++
T Consensus       495 ~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l--~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          495 DNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSC--PRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGC--TTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcC--CCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence            984 56688 7999999999999999887765 8999998  999999999865 67666544444456888888853

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.67  E-value=1.7e-17  Score=150.16  Aligned_cols=150  Identities=13%  Similarity=0.091  Sum_probs=81.6

Q ss_pred             CCCCceeEecCCCCcccc-----chhh-cCCCCCcEEecCCCCCCCcC----C-CCCCCCCCcEeeccccccccccccch
Q 039126           14 RPKNLVSPEIPRNSIKQL-----WKVV-QRLVNLKSINLNHSEHLTEI----P-SLSLATNLESLNFQRYTSLLETHSSI   82 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~l-----~~~~-~~l~~L~~L~L~~~~~~~~~----~-~~~~l~~L~~L~l~~~~~~~~~~~~~   82 (295)
                      .+++|++|++++|.+...     ...+ ...++|++|++++|.+....    + .+..+++|++|++++|......+..+
T Consensus       111 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  190 (461)
T 1z7x_W          111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVL  190 (461)
T ss_dssp             SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred             cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHH
Confidence            578888888888887632     2222 23567888888888765533    2 24556777777777765322222222


Q ss_pred             h-----cccCCcEEccccCcCCce----eCCcc-cCccccEEeccCCCCCcc----c----CcCCCCCceEEccCccccc
Q 039126           83 R-----HLNKFVARNLKHCRSLTN----LSTSI-HLESLKKLILSGCSNLMS----F----PELFYNIKELSLDGTAINE  144 (295)
Q Consensus        83 ~-----~l~~L~~L~l~~~~~l~~----l~~~~-~~~~L~~L~l~~~~~~~~----~----~~~~~~L~~L~l~~~~i~~  144 (295)
                      .     ..++|++|++++|..-..    ++..+ .+++|+.|++++|.+...    +    .....+|++|++++|.++.
T Consensus       191 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~  270 (461)
T 1z7x_W          191 CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA  270 (461)
T ss_dssp             HHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             HHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence            1     244667777766532211    12211 256666666666643221    1    1123456666666665553


Q ss_pred             -----cchhhhCCCCCcEEecCCC
Q 039126          145 -----LPSSIEYLSKLVILNLGNS  163 (295)
Q Consensus       145 -----~~~~~~~~~~L~~L~l~~~  163 (295)
                           ++..+..+++|++|++++|
T Consensus       271 ~~~~~l~~~l~~~~~L~~L~Ls~n  294 (461)
T 1z7x_W          271 KGCGDLCRVLRAKESLKELSLAGN  294 (461)
T ss_dssp             HHHHHHHHHHHHCTTCCEEECTTC
T ss_pred             HHHHHHHHHHhhCCCcceEECCCC
Confidence                 4444555555666666555

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.67  E-value=7.2e-16  Score=131.47  Aligned_cols=187  Identities=19%  Similarity=0.270  Sum_probs=129.4

Q ss_pred             CceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccccC
Q 039126           17 NLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHC   96 (295)
Q Consensus        17 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   96 (295)
                      ++..+.+..+.+.++. ....+++|+.|++++|.+ ..++.+..+++|++|++++| .+..++. +..+++|++|++++|
T Consensus        25 ~~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i-~~~~~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n  100 (291)
T 1h6t_A           25 ETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN  100 (291)
T ss_dssp             HHHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS
T ss_pred             HHHHHHhcCCCccccc-chhhcCcccEEEccCCCc-ccChhHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC
Confidence            3444556655555432 234677888888888864 34566777888888888875 3444443 667777777777764


Q ss_pred             cCCceeCCcccCccccEEeccCCCCCcccCcCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCC
Q 039126           97 RSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKL  176 (295)
Q Consensus        97 ~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l  176 (295)
                       .++.++....+++|                     ++|++++|.++.++ .+..+++|+.|++++|. +..+ ..+..+
T Consensus       101 -~l~~~~~l~~l~~L---------------------~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l  155 (291)
T 1h6t_A          101 -KVKDLSSLKDLKKL---------------------KSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRL  155 (291)
T ss_dssp             -CCCCGGGGTTCTTC---------------------CEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGC
T ss_pred             -cCCCChhhccCCCC---------------------CEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccC
Confidence             33444332234444                     45555555555553 46788999999999984 5555 468899


Q ss_pred             CCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126          177 KSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF  242 (295)
Q Consensus       177 ~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~  242 (295)
                      ++|+.|++++|.+.+..+  +..+  ++|++|+++++ .++.++.     ...+++|+.|++++++
T Consensus       156 ~~L~~L~L~~N~l~~~~~--l~~l--~~L~~L~L~~N-~i~~l~~-----l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          156 TKLDTLSLEDNQISDIVP--LAGL--TKLQNLYLSKN-HISDLRA-----LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTC--TTCCEEECCSS-CCCBCGG-----GTTCTTCSEEEEEEEE
T ss_pred             CCCCEEEccCCccccchh--hcCC--CccCEEECCCC-cCCCChh-----hccCCCCCEEECcCCc
Confidence            999999999998765444  7776  99999999987 5677654     2689999999999874

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=2.3e-16  Score=126.72  Aligned_cols=149  Identities=15%  Similarity=0.169  Sum_probs=84.7

Q ss_pred             cCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCceeCCcc-cCccccEE
Q 039126           36 QRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKL  114 (295)
Q Consensus        36 ~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L  114 (295)
                      +.+++|+.|++++|.+. .+|.+..+++|++|++++| .+..++ .+..+++|++|++++|..-...+..+ .+++|+.|
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCcc-ChHHHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            34455555555555433 3444555555555555554 222222 44455555555555543222222222 25566666


Q ss_pred             eccCCCCCcccCc---CCCCCceEEccCcc-ccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCC
Q 039126          115 ILSGCSNLMSFPE---LFYNIKELSLDGTA-INELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNL  190 (295)
Q Consensus       115 ~l~~~~~~~~~~~---~~~~L~~L~l~~~~-i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~  190 (295)
                      ++++|.+....+.   .+.+|++|++++|. ++.++ .+..+++|+.|++++|. +..++ .+.++++|++|++++|.+.
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECBC---
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeCcccC
Confidence            6666554433332   23456677777776 66666 57788889999998874 55565 5778889999999887653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.66  E-value=1.2e-15  Score=123.40  Aligned_cols=179  Identities=16%  Similarity=0.101  Sum_probs=134.7

Q ss_pred             CCCCcCCCCCCCCCceeEecCCCCccccchh-hcCCCCCcEEecCCCCCCCcCCC-CCCCCCCcEeecccccccccccc-
Q 039126            4 CPFKSLSSIIRPKNLVSPEIPRNSIKQLWKV-VQRLVNLKSINLNHSEHLTEIPS-LSLATNLESLNFQRYTSLLETHS-   80 (295)
Q Consensus         4 ~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~-   80 (295)
                      ..+.++|... .+++++|++++|.++.++.. ++.+++|++|++++|.+.+..+. +..+++|++|++++|. ++.++. 
T Consensus        17 ~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~   94 (208)
T 2o6s_A           17 QGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNG   94 (208)
T ss_dssp             SCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred             CCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHh
Confidence            3455566332 67899999999999988754 68999999999999987644443 7899999999999965 455554 


Q ss_pred             chhcccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCCcccCc---CCCCCceEEccCccccccchhhhCCCCC
Q 039126           81 SIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE---LFYNIKELSLDGTAINELPSSIEYLSKL  155 (295)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~~~~~~~~~~L  155 (295)
                      .+..+++|++|++++| .++.++...  .+++|+.|++++|.+.+..+.   .+.+|++|++++|.+.      +.+++|
T Consensus        95 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l  167 (208)
T 2o6s_A           95 VFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGI  167 (208)
T ss_dssp             TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTT
T ss_pred             HhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCH
Confidence            4789999999999995 556666543  489999999999875543332   2457889999999765      345688


Q ss_pred             cEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchh
Q 039126          156 VILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPN  195 (295)
Q Consensus       156 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~  195 (295)
                      +.|+++.|...+.+|.+++.++.    +...|...+..+.
T Consensus       168 ~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~~  203 (208)
T 2o6s_A          168 RYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPVR  203 (208)
T ss_dssp             HHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBGG
T ss_pred             HHHHHHHHhCCceeeccCccccC----CccccccCCCcce
Confidence            99999988888899988887765    4445544343333

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.66  E-value=1.1e-15  Score=142.60  Aligned_cols=193  Identities=18%  Similarity=0.209  Sum_probs=152.9

Q ss_pred             CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccc
Q 039126           15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLK   94 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   94 (295)
                      +..+..+.+..+.+..+.. +..+.+|+.|++++|.+ ..++.+..+++|++|++++|. +..++. +..+++|+.|+++
T Consensus        20 l~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCC-CCCTTGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECC
T ss_pred             HHHHHHHhccCCCcccccc-hhcCCCCCEEECcCCCC-CCChHHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECc
Confidence            4456667777777776543 46889999999999985 566789999999999999964 455554 8899999999999


Q ss_pred             cCcCCceeCCcccCccccEEeccCCCCCcccCc--CCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccc
Q 039126           95 HCRSLTNLSTSIHLESLKKLILSGCSNLMSFPE--LFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSK  172 (295)
Q Consensus        95 ~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~  172 (295)
                      +| .+..++....+++|+.|++++|.+. .++.  .+.+|+.|++++|.++.+ ..+..+++|+.|++++|. +..++. 
T Consensus        96 ~N-~l~~l~~l~~l~~L~~L~Ls~N~l~-~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~-  170 (605)
T 1m9s_A           96 EN-KIKDLSSLKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-  170 (605)
T ss_dssp             SS-CCCCCTTSTTCTTCCEEECTTSCCC-CCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG-
T ss_pred             CC-CCCCChhhccCCCCCEEEecCCCCC-CCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh-
Confidence            96 5666775556999999999998754 3442  356899999999999988 568899999999999985 455544 


Q ss_pred             cCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccc
Q 039126          173 ICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSG  221 (295)
Q Consensus       173 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~  221 (295)
                      +..+++|+.|++++|.+.+ + ..+..+  ++|+.|++++|+ +...+.
T Consensus       171 l~~l~~L~~L~Ls~N~i~~-l-~~l~~l--~~L~~L~L~~N~-l~~~p~  214 (605)
T 1m9s_A          171 LAGLTKLQNLYLSKNHISD-L-RALAGL--KNLDVLELFSQE-CLNKPI  214 (605)
T ss_dssp             GTTCTTCCEEECCSSCCCB-C-GGGTTC--TTCSEEECCSEE-EECCCC
T ss_pred             hccCCCCCEEECcCCCCCC-C-hHHccC--CCCCEEEccCCc-CcCCcc
Confidence            8899999999999987755 4 357776  999999999875 444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=1.1e-16  Score=134.64  Aligned_cols=167  Identities=19%  Similarity=0.305  Sum_probs=113.2

Q ss_pred             CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEcc
Q 039126           14 RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNL   93 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   93 (295)
                      .+.++..++++++.+++++ .+..+++|++|++++|.+ ..++.+..+++|++|++++| .+..++. +..+++|++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNI-QSLAGMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCC-CCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred             HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCc-ccchHHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence            4666778888888888877 578889999999999975 45677888899999999885 4555555 788888888888


Q ss_pred             ccCcCCceeCCcccCccccEEeccCCCCCcccCc--CCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCccc
Q 039126           94 KHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPE--LFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPS  171 (295)
Q Consensus        94 ~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~  171 (295)
                      ++| .++.++.... ++|+.|++++|.+. .++.  .+.+|++|++++|.++.++ .++.+++|+.|++++|. +..+ .
T Consensus        93 ~~N-~l~~l~~~~~-~~L~~L~L~~N~l~-~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~-~  166 (263)
T 1xeu_A           93 NRN-RLKNLNGIPS-ACLSRLFLDNNELR-DTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNT-G  166 (263)
T ss_dssp             CSS-CCSCCTTCCC-SSCCEEECCSSCCS-BSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBC-T
T ss_pred             CCC-ccCCcCcccc-CcccEEEccCCccC-CChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-Ccch-H
Confidence            885 4555554434 67777777776533 2322  2335666666666666654 45566666666666663 3333 3


Q ss_pred             ccCCCCCCCeeeccCCCCC
Q 039126          172 KICKLKSLQHLNLSCCSNL  190 (295)
Q Consensus       172 ~l~~l~~L~~L~l~~~~~~  190 (295)
                      .+..+++|+.|++++|.+.
T Consensus       167 ~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          167 GLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             TSTTCCCCCEEEEEEEEEE
T ss_pred             HhccCCCCCEEeCCCCccc
Confidence            4566666666666665543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.63  E-value=9.7e-15  Score=136.85  Aligned_cols=203  Identities=21%  Similarity=0.236  Sum_probs=140.6

Q ss_pred             CCCCCCCceeEecCCCCccc---cchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeecccccccccccc-chhccc
Q 039126           11 SIIRPKNLVSPEIPRNSIKQ---LWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHS-SIRHLN   86 (295)
Q Consensus        11 ~~~~~~~L~~L~l~~~~~~~---l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~   86 (295)
                      ....+++|+.+++++|.+..   .+.....+..|+++++..+......+.+..+++|+.++++.++.....+. .+..+.
T Consensus       366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~  445 (635)
T 4g8a_A          366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR  445 (635)
T ss_dssp             CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred             ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc
Confidence            34457788888888887653   34566777888888888887555445677788888888887665555443 467788


Q ss_pred             CCcEEccccCcCCceeCCcc-cCccccEEeccCCCCCcc-cCcC---CCCCceEEccCcccccc-chhhhCCCCCcEEec
Q 039126           87 KFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMS-FPEL---FYNIKELSLDGTAINEL-PSSIEYLSKLVILNL  160 (295)
Q Consensus        87 ~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~-~~~~---~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l  160 (295)
                      +++.+++++|......+... .+++++.|++++|..... .|..   +.+|++|++++|.++.+ |..++.+++|+.|++
T Consensus       446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L  525 (635)
T 4g8a_A          446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  525 (635)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence            88888888754333333333 377888888888764443 3333   34677888888888865 556778888888888


Q ss_pred             CCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccc
Q 039126          161 GNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCS  214 (295)
Q Consensus       161 ~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~  214 (295)
                      ++|......|..+.++++|++|++++|.+.+..|..+..+ |++|++|++++++
T Consensus       526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~~L~~L~L~~Np  578 (635)
T 4g8a_A          526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF-PSSLAFLNLTQND  578 (635)
T ss_dssp             TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC-CTTCCEEECTTCC
T ss_pred             CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh-hCcCCEEEeeCCC
Confidence            8875434445567788888888888888777777776663 4678888887643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.61  E-value=5.2e-15  Score=118.76  Aligned_cols=148  Identities=17%  Similarity=0.191  Sum_probs=123.3

Q ss_pred             CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEcc
Q 039126           14 RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNL   93 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   93 (295)
                      .+++|+.|++++|.+..++ .+..+++|++|++++|. ....+.+..+++|++|++++|......+..+..+++|++|++
T Consensus        42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            4789999999999999888 78999999999999995 345567899999999999997666557778899999999999


Q ss_pred             ccCcCCceeCCcc-cCccccEEeccCCCCCcccCc--CCCCCceEEccCccccccchhhhCCCCCcEEecCCCc
Q 039126           94 KHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPE--LFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSS  164 (295)
Q Consensus        94 ~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~  164 (295)
                      ++|......+..+ .+++|+.|++++|...+.++.  .+++|++|++++|.++.++ .+..+++|+.|++++|.
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence            9975544344433 489999999999975666663  3458899999999999887 67889999999999985

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.60  E-value=2.3e-14  Score=117.80  Aligned_cols=152  Identities=20%  Similarity=0.218  Sum_probs=102.9

Q ss_pred             ceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc-chhcccCCcEEcccc
Q 039126           18 LVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS-SIRHLNKFVARNLKH   95 (295)
Q Consensus        18 L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~   95 (295)
                      .+.++.+++.++.+|..+.  ++|++|++++|.+.+..| .+..+++|++|++++|. ++.++. .+..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCC
Confidence            4568888888888886554  788888888888776656 47788888888888854 455553 356677777777776


Q ss_pred             CcCCceeCCcccCccccEEeccCCCCCcccCcCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcc-cccC
Q 039126           96 CRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLP-SKIC  174 (295)
Q Consensus        96 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~l~  174 (295)
                      | .++.++....                   ..+.+|++|++++|.++.+|..+..+++|+.|++++|. +..+| ..+.
T Consensus        98 N-~l~~l~~~~~-------------------~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~  156 (229)
T 3e6j_A           98 N-QLTVLPSAVF-------------------DRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFD  156 (229)
T ss_dssp             S-CCCCCCTTTT-------------------TTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTT
T ss_pred             C-cCCccChhHh-------------------CcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHh
Confidence            4 3444433210                   11234455555555566677777788888888888874 44554 4577


Q ss_pred             CCCCCCeeeccCCCCCCCc
Q 039126          175 KLKSLQHLNLSCCSNLESF  193 (295)
Q Consensus       175 ~l~~L~~L~l~~~~~~~~~  193 (295)
                      .+++|+.|++++|.+....
T Consensus       157 ~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          157 RLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             TCTTCCEEECTTSCBCTTB
T ss_pred             CCCCCCEEEeeCCCccCCc
Confidence            8888888888888776554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.60  E-value=1.2e-16  Score=149.12  Aligned_cols=230  Identities=10%  Similarity=-0.003  Sum_probs=158.6

Q ss_pred             CCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-C-CCCCCCCcEeeccccccccccccchhcccCCcE
Q 039126           13 IRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-S-LSLATNLESLNFQRYTSLLETHSSIRHLNKFVA   90 (295)
Q Consensus        13 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   90 (295)
                      ..+++|+.|+++++....+|..+..+++|++|++++|.+..... . +..+++|++|+++++-.-..++.....+++|+.
T Consensus       267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~  346 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR  346 (592)
T ss_dssp             CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred             hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence            35778888888887666778888889999999999998544333 2 578899999999854333344444577889999


Q ss_pred             Ecccc----------CcCCceeCCc---ccCccccEEeccCCCCCcccC----cCCCCCceEEcc----Cccccc-----
Q 039126           91 RNLKH----------CRSLTNLSTS---IHLESLKKLILSGCSNLMSFP----ELFYNIKELSLD----GTAINE-----  144 (295)
Q Consensus        91 L~l~~----------~~~l~~l~~~---~~~~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~----~~~i~~-----  144 (295)
                      |++++          |..++.....   ..+++|++|++..+...+..+    ..+++|++|+++    .+.++.     
T Consensus       347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~  426 (592)
T 3ogk_B          347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN  426 (592)
T ss_dssp             EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred             EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence            99984          5555532211   137899999997665544322    335679999986    456664     


Q ss_pred             -cchhhhCCCCCcEEecCCCcC-C-cCcccccC-CCCCCCeeeccCCCCCCC-chhhhhccCCCCcceeecccccccccc
Q 039126          145 -LPSSIEYLSKLVILNLGNSSR-L-EGLPSKIC-KLKSLQHLNLSCCSNLES-FPNELRNLFPCDLYDIEAHWCSSLETL  219 (295)
Q Consensus       145 -~~~~~~~~~~L~~L~l~~~~~-~-~~~p~~l~-~l~~L~~L~l~~~~~~~~-~~~~l~~~~~~~L~~L~l~~~~~l~~~  219 (295)
                       ++..+..+++|+.|+++.|.. + ...+..+. .+++|++|++++|.+.+. ++..+..+  ++|++|++++|. ++..
T Consensus       427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~--~~L~~L~l~~n~-l~~~  503 (592)
T 3ogk_B          427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGC--PNLQKLEMRGCC-FSER  503 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCC--TTCCEEEEESCC-CBHH
T ss_pred             HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcC--cccCeeeccCCC-CcHH
Confidence             334466789999999977642 2 22222333 488899999999887653 34445566  899999999987 5543


Q ss_pred             cccchhhhccCCcccEEeecCCCCChhhh
Q 039126          220 SGLSIIFTKISRNTQSFDFINCFKLHQNV  248 (295)
Q Consensus       220 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  248 (295)
                      ..  ..+...+++|++|++++|. ++...
T Consensus       504 ~~--~~~~~~l~~L~~L~ls~n~-it~~~  529 (592)
T 3ogk_B          504 AI--AAAVTKLPSLRYLWVQGYR-ASMTG  529 (592)
T ss_dssp             HH--HHHHHHCSSCCEEEEESCB-CCTTC
T ss_pred             HH--HHHHHhcCccCeeECcCCc-CCHHH
Confidence            22  2223578999999999997 66553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.58  E-value=1.1e-14  Score=127.84  Aligned_cols=169  Identities=18%  Similarity=0.202  Sum_probs=119.1

Q ss_pred             eeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCC-CC-CCCCCcEeeccccccccccccchhcccCCcEEccccC
Q 039126           19 VSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPS-LS-LATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHC   96 (295)
Q Consensus        19 ~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   96 (295)
                      +.++++++.++.+|..+.  ..++.|+|++|.+.+..+. +. .+++|++|++++|......+..+..+++|++|++++|
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            578888888888886553  4588899999987655553 55 8889999999886443333355888889999999885


Q ss_pred             cCCceeCCcc--cCccccEEeccCCCCCcccCcC---CCCCceEEccCccccccchhh----hCCCCCcEEecCCCcCCc
Q 039126           97 RSLTNLSTSI--HLESLKKLILSGCSNLMSFPEL---FYNIKELSLDGTAINELPSSI----EYLSKLVILNLGNSSRLE  167 (295)
Q Consensus        97 ~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~i~~~~~~~----~~~~~L~~L~l~~~~~~~  167 (295)
                       .++.++...  .+++|+.|++++|.+....+..   +.+|++|++++|.++.+|..+    ..+++|+.|++++|. +.
T Consensus        99 -~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~  176 (361)
T 2xot_A           99 -HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LK  176 (361)
T ss_dssp             -CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CC
T ss_pred             -cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CC
Confidence             456666543  4788888888888765443443   346778888888888777654    467888888888874 44


Q ss_pred             Ccc-cccCCCCC--CCeeeccCCCCCC
Q 039126          168 GLP-SKICKLKS--LQHLNLSCCSNLE  191 (295)
Q Consensus       168 ~~p-~~l~~l~~--L~~L~l~~~~~~~  191 (295)
                      .+| ..+..++.  ++.|++++|++..
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             ccCHHHhhhccHhhcceEEecCCCccC
Confidence            554 44556665  4778888876653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.58  E-value=3.1e-14  Score=116.34  Aligned_cols=149  Identities=15%  Similarity=0.129  Sum_probs=95.1

Q ss_pred             eeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccccCc
Q 039126           19 VSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCR   97 (295)
Q Consensus        19 ~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~   97 (295)
                      +.++++++.++.+|..+.  ..|+.|++++|.+.+..+ .+..+++|++|++++|......|..+..+++|++|++++| 
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-
Confidence            578888888888887554  678899999988765555 5888888888888886554444667788888888888874 


Q ss_pred             CCceeCCcc--cCccccEEeccCCCCCcccCcCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCC
Q 039126           98 SLTNLSTSI--HLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICK  175 (295)
Q Consensus        98 ~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~  175 (295)
                      .++.++...  .+++|+.|++++|.+.+..|                    ..+..+++|+.|++++|......+..+..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~--------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  150 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRV--------------------DAFQDLHNLNLLSLYDNKLQTIAKGTFSP  150 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------------TTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCH--------------------HHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence            455555543  36666666666654332222                    23445555566666555322222334555


Q ss_pred             CCCCCeeeccCCCCC
Q 039126          176 LKSLQHLNLSCCSNL  190 (295)
Q Consensus       176 l~~L~~L~l~~~~~~  190 (295)
                      +++|++|++++|.+.
T Consensus       151 l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          151 LRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CTTCCEEECCSSCEE
T ss_pred             CCCCCEEEeCCCCcC
Confidence            666666666665543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.57  E-value=1e-14  Score=122.46  Aligned_cols=154  Identities=21%  Similarity=0.208  Sum_probs=125.2

Q ss_pred             CCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchh
Q 039126            4 CPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIR   83 (295)
Q Consensus         4 ~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~   83 (295)
                      ..+++++....+++|+.|++++|.+..++ .++.+++|++|++++|.+.+. +.+..+++|++|++++| .++.++....
T Consensus        29 ~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~L~~N-~l~~l~~~~~  105 (263)
T 1xeu_A           29 QSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRN-RLKNLNGIPS  105 (263)
T ss_dssp             SCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC-GGGTTCSSCCEEECCSS-CCSCCTTCCC
T ss_pred             CCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCC-hhhccCCCCCEEECCCC-ccCCcCcccc
Confidence            45666665557999999999999999988 789999999999999987554 44999999999999996 5555664333


Q ss_pred             cccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccCc--CCCCCceEEccCccccccchhhhCCCCCcEEecC
Q 039126           84 HLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPE--LFYNIKELSLDGTAINELPSSIEYLSKLVILNLG  161 (295)
Q Consensus        84 ~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~  161 (295)
                        ++|+.|++++| .++.++....+++|+.|++++|++. .++.  .+.+|++|++++|.++.+ ..+..+++|+.|+++
T Consensus       106 --~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~-~~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~  180 (263)
T 1xeu_A          106 --ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLT  180 (263)
T ss_dssp             --SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTSCCC-BCGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEE
T ss_pred             --CcccEEEccCC-ccCCChhhcCcccccEEECCCCcCC-CChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCC
Confidence              99999999995 5666665456999999999998754 4442  356899999999999988 668899999999999


Q ss_pred             CCcC
Q 039126          162 NSSR  165 (295)
Q Consensus       162 ~~~~  165 (295)
                      +|..
T Consensus       181 ~N~~  184 (263)
T 1xeu_A          181 GQKC  184 (263)
T ss_dssp             EEEE
T ss_pred             CCcc
Confidence            9853

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.55  E-value=5.6e-14  Score=114.79  Aligned_cols=149  Identities=20%  Similarity=0.207  Sum_probs=92.9

Q ss_pred             eeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeeccccccccccc-cchhcccCCcEEcccc
Q 039126           19 VSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETH-SSIRHLNKFVARNLKH   95 (295)
Q Consensus        19 ~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~   95 (295)
                      +.++++++.++++|..+.  ..+++|++++|.+.+..+  .+..+++|++|++++|. ++.++ ..+..+++|++|++++
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCC
Confidence            478888888888886553  346788888888765544  26778888888888754 44443 3567777777777776


Q ss_pred             CcCCceeCCc-c-cCccccEEeccCCCCCcccCcCCCCCceEEccCcccccc-chhhhCCCCCcEEecCCCcCCcCcccc
Q 039126           96 CRSLTNLSTS-I-HLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINEL-PSSIEYLSKLVILNLGNSSRLEGLPSK  172 (295)
Q Consensus        96 ~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~~~p~~  172 (295)
                      |. ++.++.. + .+++|++|++++|.                     ++.+ |..+..+++|+.|++++|......|..
T Consensus        91 N~-l~~~~~~~~~~l~~L~~L~Ls~N~---------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  148 (220)
T 2v70_A           91 NR-LENVQHKMFKGLESLKTLMLRSNR---------------------ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA  148 (220)
T ss_dssp             SC-CCCCCGGGGTTCSSCCEEECTTSC---------------------CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred             Cc-cCccCHhHhcCCcCCCEEECCCCc---------------------CCeECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence            43 3433332 2 25555555555554                     4433 334555666777777666433333566


Q ss_pred             cCCCCCCCeeeccCCCCCCC
Q 039126          173 ICKLKSLQHLNLSCCSNLES  192 (295)
Q Consensus       173 l~~l~~L~~L~l~~~~~~~~  192 (295)
                      +..+++|++|++++|.+...
T Consensus       149 ~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          149 FDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             TTTCTTCCEEECCSCCEECS
T ss_pred             hcCCCCCCEEEecCcCCcCC
Confidence            66677777777777665543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.54  E-value=1e-13  Score=113.17  Aligned_cols=117  Identities=18%  Similarity=0.216  Sum_probs=92.8

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS   80 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~   80 (295)
                      +..++.+|... .++++.|++++|.+..++. .+..+++|++|++++|.+.+..| .+..+++|++|++++| .++.+|.
T Consensus        20 ~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~   97 (220)
T 2v9t_B           20 GKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPK   97 (220)
T ss_dssp             TSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCT
T ss_pred             CCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCH
Confidence            45677777644 3789999999999998875 67999999999999999877667 6999999999999995 5566665


Q ss_pred             c-hhcccCCcEEccccCcCCceeCC-cc-cCccccEEeccCCCCC
Q 039126           81 S-IRHLNKFVARNLKHCRSLTNLST-SI-HLESLKKLILSGCSNL  122 (295)
Q Consensus        81 ~-~~~l~~L~~L~l~~~~~l~~l~~-~~-~~~~L~~L~l~~~~~~  122 (295)
                      . +..+++|++|++++|. ++.++. .+ .+++|+.|++++|.+.
T Consensus        98 ~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~  141 (220)
T 2v9t_B           98 SLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQ  141 (220)
T ss_dssp             TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             hHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCC
Confidence            4 7899999999999964 455443 33 3777888888777543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.54  E-value=7.7e-14  Score=122.49  Aligned_cols=159  Identities=19%  Similarity=0.227  Sum_probs=124.8

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccchh-hc-CCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccc
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKV-VQ-RLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETH   79 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~-~~-~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~   79 (295)
                      +..++.+|..+ .+.++.|+|++|.++.++.. +. .+++|++|++++|.+.+..+ .+..+++|++|++++|. ++.++
T Consensus        27 ~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~  104 (361)
T 2xot_A           27 KQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLD  104 (361)
T ss_dssp             SSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEEC
T ss_pred             CCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCC
Confidence            44567777533 45689999999999988754 45 89999999999999876665 59999999999999965 55555


Q ss_pred             -cchhcccCCcEEccccCcCCceeC-Ccc-cCccccEEeccCCCCCcccCcC-------CCCCceEEccCccccccch-h
Q 039126           80 -SSIRHLNKFVARNLKHCRSLTNLS-TSI-HLESLKKLILSGCSNLMSFPEL-------FYNIKELSLDGTAINELPS-S  148 (295)
Q Consensus        80 -~~~~~l~~L~~L~l~~~~~l~~l~-~~~-~~~~L~~L~l~~~~~~~~~~~~-------~~~L~~L~l~~~~i~~~~~-~  148 (295)
                       ..+..+++|++|++++|. +..++ ..+ .+++|+.|++++|.+. .+|..       +.+|++|++++|.++.+|. .
T Consensus       105 ~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~  182 (361)
T 2xot_A          105 EFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD  182 (361)
T ss_dssp             TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCHHH
T ss_pred             HHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCHHH
Confidence             458899999999999965 55554 334 4899999999998644 45543       5688999999999998874 4


Q ss_pred             hhCCCC--CcEEecCCCcC
Q 039126          149 IEYLSK--LVILNLGNSSR  165 (295)
Q Consensus       149 ~~~~~~--L~~L~l~~~~~  165 (295)
                      +..++.  ++.|++++|..
T Consensus       183 ~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          183 LQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             HHHSCHHHHTTEECCSSCE
T ss_pred             hhhccHhhcceEEecCCCc
Confidence            666766  48899998853

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.54  E-value=5.8e-15  Score=137.68  Aligned_cols=194  Identities=13%  Similarity=0.097  Sum_probs=109.1

Q ss_pred             CCCCceeEecCCCCccc-----cchhhcCCCCCcEEecCCCCCCC----cCC-CCCCCCCCcEeeccccccccccccchh
Q 039126           14 RPKNLVSPEIPRNSIKQ-----LWKVVQRLVNLKSINLNHSEHLT----EIP-SLSLATNLESLNFQRYTSLLETHSSIR   83 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~L~~~~~~~----~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~   83 (295)
                      .+++|++|+|++|.+.+     ++.....+++|++|++++|.+.+    .++ .+..+++|++|++++|. +..++..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHh
Confidence            47888888888887653     33445678888888888887652    222 14567888888888854 344565666


Q ss_pred             cccCCcEEccccCcCC--------------------------ceeCCcc-cCccccEEeccCCCCCccc----CcCCCCC
Q 039126           84 HLNKFVARNLKHCRSL--------------------------TNLSTSI-HLESLKKLILSGCSNLMSF----PELFYNI  132 (295)
Q Consensus        84 ~l~~L~~L~l~~~~~l--------------------------~~l~~~~-~~~~L~~L~l~~~~~~~~~----~~~~~~L  132 (295)
                      .+++|+.|+++.+...                          ..++... .+++|++|++++|......    ...+++|
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L  320 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL  320 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence            7777777776532111                          1111111 2556777777766532221    1344566


Q ss_pred             ceEEccCcccc--ccchhhhCCCCCcEEecCC----------CcCCcC--cccccCCCCCCCeeeccCCCCCCCchhhhh
Q 039126          133 KELSLDGTAIN--ELPSSIEYLSKLVILNLGN----------SSRLEG--LPSKICKLKSLQHLNLSCCSNLESFPNELR  198 (295)
Q Consensus       133 ~~L~l~~~~i~--~~~~~~~~~~~L~~L~l~~----------~~~~~~--~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~  198 (295)
                      ++|+++ +.+.  .++..+..+++|++|++++          |..+..  ++.....+++|++|+++.+.+.+..+..+.
T Consensus       321 ~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~  399 (592)
T 3ogk_B          321 EVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG  399 (592)
T ss_dssp             CEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred             CEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence            666665 2222  3333345566677777763          333321  122233466666666655555554555444


Q ss_pred             c-cCCCCcceeecc
Q 039126          199 N-LFPCDLYDIEAH  211 (295)
Q Consensus       199 ~-~~~~~L~~L~l~  211 (295)
                      . +  ++|++|+++
T Consensus       400 ~~~--~~L~~L~l~  411 (592)
T 3ogk_B          400 TYL--KNLCDFRLV  411 (592)
T ss_dssp             HHC--CSCCEEEEE
T ss_pred             hhC--CCCcEEEEe
Confidence            3 3  566666665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.52  E-value=2e-13  Score=111.42  Aligned_cols=119  Identities=16%  Similarity=0.185  Sum_probs=90.8

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccc--hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccc
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLW--KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETH   79 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~   79 (295)
                      +..++++|..+ .+.++.|++++|.++.++  ..++.+++|++|++++|.+.+..+ .+..+++|++|++++|......+
T Consensus        20 ~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~   98 (220)
T 2v70_A           20 NQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH   98 (220)
T ss_dssp             SSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCG
T ss_pred             CCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCH
Confidence            34566777533 456799999999999884  347899999999999999876666 59999999999999975544445


Q ss_pred             cchhcccCCcEEccccCcCCcee-CCcc-cCccccEEeccCCCCCc
Q 039126           80 SSIRHLNKFVARNLKHCRSLTNL-STSI-HLESLKKLILSGCSNLM  123 (295)
Q Consensus        80 ~~~~~l~~L~~L~l~~~~~l~~l-~~~~-~~~~L~~L~l~~~~~~~  123 (295)
                      ..+..+++|++|++++|. ++.+ +..+ .+++|+.|++++|++.+
T Consensus        99 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~  143 (220)
T 2v70_A           99 KMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITT  143 (220)
T ss_dssp             GGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCC
T ss_pred             hHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCE
Confidence            568999999999999964 4444 4333 36777777777765443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.52  E-value=3.1e-13  Score=111.00  Aligned_cols=116  Identities=23%  Similarity=0.181  Sum_probs=90.1

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS   80 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~   80 (295)
                      +..+..+|... .++|+.|++++|.+..+ +..+..+++|++|++++|.+....+ .+..+++|++|++++| .+..++.
T Consensus        28 ~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~  105 (229)
T 3e6j_A           28 SKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPS  105 (229)
T ss_dssp             TSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred             CCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccCh
Confidence            34566677533 48999999999999987 5678999999999999999744333 3799999999999996 4555554


Q ss_pred             -chhcccCCcEEccccCcCCceeCCcc-cCccccEEeccCCCC
Q 039126           81 -SIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSN  121 (295)
Q Consensus        81 -~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~  121 (295)
                       .+..+++|++|++++| .++.+|..+ .+++|+.|++++|.+
T Consensus       106 ~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l  147 (229)
T 3e6j_A          106 AVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQL  147 (229)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCC
T ss_pred             hHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCcC
Confidence             4789999999999985 456676555 367777777777653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.50  E-value=6.9e-15  Score=137.17  Aligned_cols=35  Identities=14%  Similarity=0.154  Sum_probs=16.0

Q ss_pred             CCCceeEecCCCCcccc-chhhc-CCCCCcEEecCCC
Q 039126           15 PKNLVSPEIPRNSIKQL-WKVVQ-RLVNLKSINLNHS   49 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l-~~~~~-~l~~L~~L~L~~~   49 (295)
                      +++|++|++++|.++.. +..+. .+++|++|++++|
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            45555555555544421 22221 3445555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.49  E-value=9.4e-14  Score=108.38  Aligned_cols=134  Identities=18%  Similarity=0.221  Sum_probs=89.5

Q ss_pred             CCCCceeEecCCCCcc--ccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEE
Q 039126           14 RPKNLVSPEIPRNSIK--QLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVAR   91 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   91 (295)
                      ..++|+.|++++|.+.  .+|..+..+++|++|++++|.+.+. +.+..+++|++|++++|.....+|..+..+++|++|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            3577888888888887  6777777888888888888876544 667778888888888865444466556667777777


Q ss_pred             ccccCcCCceeCC--cc-cCccccEEeccCCCCCcccCcCCCCCceEEccCccccccch----hhhCCCCCcEEecCCCc
Q 039126           92 NLKHCRSLTNLST--SI-HLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPS----SIEYLSKLVILNLGNSS  164 (295)
Q Consensus        92 ~l~~~~~l~~l~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~----~~~~~~~L~~L~l~~~~  164 (295)
                      ++++| .++.++.  .+ .++                     +|++|++++|.++.++.    .+..+++|+.|++++|.
T Consensus       101 ~Ls~N-~l~~~~~~~~l~~l~---------------------~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          101 NLSGN-KLKDISTLEPLKKLE---------------------CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             ECBSS-SCCSSGGGGGGSSCS---------------------CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             eccCC-ccCcchhHHHHhcCC---------------------CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            77775 3344331  11 234                     45555555555665554    56777888888888773


Q ss_pred             CCcCccc
Q 039126          165 RLEGLPS  171 (295)
Q Consensus       165 ~~~~~p~  171 (295)
                       ...+|.
T Consensus       159 -~~~~~~  164 (168)
T 2ell_A          159 -DQEAPD  164 (168)
T ss_dssp             -SCBCCS
T ss_pred             -hhhccc
Confidence             444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.48  E-value=1.1e-14  Score=135.78  Aligned_cols=214  Identities=12%  Similarity=0.017  Sum_probs=137.4

Q ss_pred             ccchhhcCCCCCcEEecCCCCCCCcCC-C-CCCCCCCcEeeccccccccccccchhcccCCcEEcccc--------CcCC
Q 039126           30 QLWKVVQRLVNLKSINLNHSEHLTEIP-S-LSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKH--------CRSL   99 (295)
Q Consensus        30 ~l~~~~~~l~~L~~L~L~~~~~~~~~~-~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~--------~~~l   99 (295)
                      .++..+..+++|++|++++|.+..... . +..+++|++|++++|-....++.....+++|+.|++.+        +..+
T Consensus       280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l  359 (594)
T 2p1m_B          280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL  359 (594)
T ss_dssp             GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred             hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence            344444567888888888887443322 2 56788888888888622122333344678888888843        2333


Q ss_pred             ceeCCc---ccCccccEEeccCCCCCcccC----cCCCCCceEEcc--C----cccccc------chhhhCCCCCcEEec
Q 039126          100 TNLSTS---IHLESLKKLILSGCSNLMSFP----ELFYNIKELSLD--G----TAINEL------PSSIEYLSKLVILNL  160 (295)
Q Consensus       100 ~~l~~~---~~~~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~--~----~~i~~~------~~~~~~~~~L~~L~l  160 (295)
                      +.....   ..+++|+.|.+..+......+    ..+++|++|+++  +    +.++..      +..+..+++|+.|++
T Consensus       360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L  439 (594)
T 2p1m_B          360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL  439 (594)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred             CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence            321111   127888988776665443222    245689999988  3    455533      233567889999999


Q ss_pred             CCCcCCcCcccccCC-CCCCCeeeccCCCCCCCchhhh-hccCCCCcceeecccccccccccccchhhhccCCcccEEee
Q 039126          161 GNSSRLEGLPSKICK-LKSLQHLNLSCCSNLESFPNEL-RNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDF  238 (295)
Q Consensus       161 ~~~~~~~~~p~~l~~-l~~L~~L~l~~~~~~~~~~~~l-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l  238 (295)
                      +++ .....+..+.. +++|++|++++|.+.+..+..+ ..+  ++|++|++++|.. +....  ..+...+++|++|++
T Consensus       440 ~~~-l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~--~~L~~L~L~~n~~-~~~~~--~~~~~~l~~L~~L~l  513 (594)
T 2p1m_B          440 SGL-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC--DSLRKLEIRDCPF-GDKAL--LANASKLETMRSLWM  513 (594)
T ss_dssp             CSS-CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHC--TTCCEEEEESCSC-CHHHH--HHTGGGGGGSSEEEE
T ss_pred             cCc-ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcC--CCcCEEECcCCCC-cHHHH--HHHHHhCCCCCEEee
Confidence            762 22223334444 8899999999998766666555 455  9999999999875 43332  223356899999999


Q ss_pred             cCCCCChhhhHh
Q 039126          239 INCFKLHQNVVQ  250 (295)
Q Consensus       239 ~~c~~l~~~~~~  250 (295)
                      ++|+. +....+
T Consensus       514 ~~~~~-~~~~~~  524 (594)
T 2p1m_B          514 SSCSV-SFGACK  524 (594)
T ss_dssp             ESSCC-BHHHHH
T ss_pred             eCCCC-CHHHHH
Confidence            99976 444333

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.46  E-value=1.3e-13  Score=131.51  Aligned_cols=187  Identities=16%  Similarity=0.095  Sum_probs=75.7

Q ss_pred             CCCceeEecCCCCccccchhhcCCCCCcEEecCC-----CCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCC
Q 039126           15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNH-----SEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKF   88 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~-----~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (295)
                      .++++.|+|.++.+...+..+-...+|+.+.+..     |.+. ..+ .+..++.|++|+|++|. +..+|..+..+++|
T Consensus       172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L  249 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSC-CSCCCGGGGGCCSC
T ss_pred             CCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCC
Confidence            4567788888887776665554444444444333     2221 223 36777778888887754 44666666677777


Q ss_pred             cEEccccCcCCceeCCcc-cCccccEEeccCCCCCcccCcCCC---CCceEEccCccccccchhhhCCCCCcEEecCCCc
Q 039126           89 VARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPELFY---NIKELSLDGTAINELPSSIEYLSKLVILNLGNSS  164 (295)
Q Consensus        89 ~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~  164 (295)
                      ++|++++| .++.+|..+ .+++|+.|+|++|.+. .+|..++   +|++|++++|.++.+|..++.+++|+.|++++|.
T Consensus       250 ~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          250 TRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             SCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred             CEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence            77777774 344666544 3667777777766543 5554433   4556666666666555555566666666666654


Q ss_pred             CCcCcccccCCCCC-CCeeeccCCCCCCCchhhhhccCCCCcceeecccc
Q 039126          165 RLEGLPSKICKLKS-LQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWC  213 (295)
Q Consensus       165 ~~~~~p~~l~~l~~-L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~  213 (295)
                      ..+.+|..+..+.. +..+++++|.+.+.+        |..|+.|+++.+
T Consensus       328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~--------p~~l~~l~l~~n  369 (727)
T 4b8c_D          328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPL--------PHERRFIEINTD  369 (727)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCCCCCC--------CCC---------
T ss_pred             cCCCChHHHhhcchhhhHHhhccCcccCcC--------ccccceeEeecc
Confidence            44344443322211 112444554444333        345555666543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.44  E-value=6.2e-13  Score=103.68  Aligned_cols=78  Identities=24%  Similarity=0.266  Sum_probs=40.5

Q ss_pred             eEEccCccccc-cchhhhCCCCCcEEecCCCcCCcCcc--cccCCCCCCCeeeccCCCCCCCch---hhhhccCCCCcce
Q 039126          134 ELSLDGTAINE-LPSSIEYLSKLVILNLGNSSRLEGLP--SKICKLKSLQHLNLSCCSNLESFP---NELRNLFPCDLYD  207 (295)
Q Consensus       134 ~L~l~~~~i~~-~~~~~~~~~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~~~L~~  207 (295)
                      +|++++|.++. +|..+..+++|++|++++| .+..+|  ..+..+++|++|++++|.+.+..+   ..+..+  ++|++
T Consensus        75 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l--~~L~~  151 (168)
T 2ell_A           75 KLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL--PQLTY  151 (168)
T ss_dssp             EEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC--SSCCE
T ss_pred             EEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC--ccCcE
Confidence            33333333333 3444445566666666665 334433  455666666666666665443332   244444  66666


Q ss_pred             eeccccc
Q 039126          208 IEAHWCS  214 (295)
Q Consensus       208 L~l~~~~  214 (295)
                      |++++|.
T Consensus       152 L~l~~n~  158 (168)
T 2ell_A          152 LDGYDRE  158 (168)
T ss_dssp             ETTEETT
T ss_pred             ecCCCCC
Confidence            6666653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.42  E-value=5.2e-13  Score=101.97  Aligned_cols=124  Identities=16%  Similarity=0.183  Sum_probs=84.2

Q ss_pred             CCCceeEecCCCCcc--ccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEc
Q 039126           15 PKNLVSPEIPRNSIK--QLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARN   92 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   92 (295)
                      .++++.|++++|.+.  .+|..++.+++|++|++++|.+.+. +.+..+++|++|++++|.....+|..+..+++|++|+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            577888888888887  6777778888888888888876544 6678888888888888655444666666777788888


Q ss_pred             cccCcCCceeC--Ccc-cCccccEEeccCCCCCcccCcCCCCCceEEccCccccccch----hhhCCCCCcEEecC
Q 039126           93 LKHCRSLTNLS--TSI-HLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPS----SIEYLSKLVILNLG  161 (295)
Q Consensus        93 l~~~~~l~~l~--~~~-~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~----~~~~~~~L~~L~l~  161 (295)
                      +++|. ++.++  ..+ .+++|+                     +|++++|.++.++.    .++.+++|+.|+++
T Consensus        95 ls~N~-i~~~~~~~~~~~l~~L~---------------------~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNK-IKDLSTIEPLKKLENLK---------------------SLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSC-CCSHHHHGGGGGCTTCC---------------------EEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCc-CCChHHHHHHhhCCCCC---------------------EEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            77753 33332  111 244444                     44555555555443    46677778877765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.41  E-value=5.8e-14  Score=133.93  Aligned_cols=147  Identities=18%  Similarity=0.209  Sum_probs=95.4

Q ss_pred             cchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCceeCCccc-C
Q 039126           31 LWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIH-L  108 (295)
Q Consensus        31 l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~-~  108 (295)
                      .+..+..+..|+.|+|++|.+. .+| .+..+++|++|+|++| .+..+|..+..+++|++|++++|. ++.+|..+. +
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCC
Confidence            3566788888999999988865 565 5668888999999886 445888888888999999998854 557777664 8


Q ss_pred             ccccEEeccCCCCCcccCcCCC---CCceEEccCcccc-ccchhhhCCC-CCcEEecCCCcCCcCcccccCCCCCCCeee
Q 039126          109 ESLKKLILSGCSNLMSFPELFY---NIKELSLDGTAIN-ELPSSIEYLS-KLVILNLGNSSRLEGLPSKICKLKSLQHLN  183 (295)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~i~-~~~~~~~~~~-~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~  183 (295)
                      ++|++|+|++|. ++.+|..++   +|++|++++|.++ .+|..+.... ....+++.+|.....+|..      |+.|+
T Consensus       293 ~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~  365 (727)
T 4b8c_D          293 FQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIE  365 (727)
T ss_dssp             TTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------
T ss_pred             CCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeE
Confidence            889999998885 457777654   5678889998888 4455554332 2233567777555555543      45555


Q ss_pred             ccCC
Q 039126          184 LSCC  187 (295)
Q Consensus       184 l~~~  187 (295)
                      ++.|
T Consensus       366 l~~n  369 (727)
T 4b8c_D          366 INTD  369 (727)
T ss_dssp             ----
T ss_pred             eecc
Confidence            6655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.41  E-value=1.5e-14  Score=134.16  Aligned_cols=171  Identities=14%  Similarity=0.106  Sum_probs=132.4

Q ss_pred             CCCCCCCcEeeccccccccccccchhcccCCcEEccccCc-------------CCceeCCcc-cCccccEEe-ccCCCC-
Q 039126           58 LSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCR-------------SLTNLSTSI-HLESLKKLI-LSGCSN-  121 (295)
Q Consensus        58 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~l~~l~~~~-~~~~L~~L~-l~~~~~-  121 (295)
                      +..+++|+.|++++ +.++.+|..++.+++|+.|+++++.             .....|..+ .+++|+.|+ ++.+.. 
T Consensus       345 ~~~~~~L~~L~Ls~-n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          345 SATDEQLFRCELSV-EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             CSTTTTSSSCCCCH-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             cccCccceeccCCh-hhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            46788999999999 4667899999999999999987643             122222222 266677776 333311 


Q ss_pred             -----------CcccCcCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCC
Q 039126          122 -----------LMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNL  190 (295)
Q Consensus       122 -----------~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~  190 (295)
                                 +..++.  ..|+.|++++|.++.+|. ++.+++|+.|++++| .+..+|..++++++|+.|++++|.+.
T Consensus       424 ~L~~l~l~~n~i~~l~~--~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~  499 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEY--ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALE  499 (567)
T ss_dssp             HHHHHHHHHHHHHHHHH--TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             hhhhhhhhcccccccCc--cCceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCC
Confidence                       112222  258999999999999987 899999999999998 46689999999999999999998876


Q ss_pred             CCchhhhhccCCCCcceeecccccccccc--cccchhhhccCCcccEEeecCCC
Q 039126          191 ESFPNELRNLFPCDLYDIEAHWCSSLETL--SGLSIIFTKISRNTQSFDFINCF  242 (295)
Q Consensus       191 ~~~~~~l~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~~L~~L~l~~c~  242 (295)
                      + +| .+..+  ++|+.|+++++ .++.+  |..+    ..+++|+.|++++++
T Consensus       500 ~-lp-~l~~l--~~L~~L~Ls~N-~l~~~~~p~~l----~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          500 N-VD-GVANL--PRLQELLLCNN-RLQQSAAIQPL----VSCPRLVLLNLQGNS  544 (567)
T ss_dssp             C-CG-GGTTC--SSCCEEECCSS-CCCSSSTTGGG----GGCTTCCEEECTTSG
T ss_pred             C-Cc-ccCCC--CCCcEEECCCC-CCCCCCCcHHH----hcCCCCCEEEecCCc
Confidence            5 77 78887  99999999986 46766  4433    689999999999985

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.40  E-value=3.4e-12  Score=101.81  Aligned_cols=122  Identities=16%  Similarity=0.164  Sum_probs=88.6

Q ss_pred             eeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCC--CCCCCCCcEeeccccccccccccchhcccCCcEEccccC
Q 039126           19 VSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPS--LSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHC   96 (295)
Q Consensus        19 ~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   96 (295)
                      ++++++++.++++|..+..  .|+.|++++|.+.+..+.  +..+++|++|++++|......|..+..+++|++|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            6788888888888765543  788888888876555543  778888888888886554445667888888888888885


Q ss_pred             cCCceeCCc-c-cCccccEEeccCCCCCcccCcCCC---CCceEEccCcccc
Q 039126           97 RSLTNLSTS-I-HLESLKKLILSGCSNLMSFPELFY---NIKELSLDGTAIN  143 (295)
Q Consensus        97 ~~l~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~i~  143 (295)
                       .++.++.. + .+++|+.|++++|++.+..|..+.   +|++|++++|.+.
T Consensus        89 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           89 -KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             -CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             -cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence             44555443 3 478888888888876666565443   6778888888876

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.39  E-value=3.2e-12  Score=101.98  Aligned_cols=116  Identities=18%  Similarity=0.187  Sum_probs=57.9

Q ss_pred             CCCcCCCCCCCCCceeEecCCCCccccchh--hcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc
Q 039126            5 PFKSLSSIIRPKNLVSPEIPRNSIKQLWKV--VQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS   81 (295)
Q Consensus         5 ~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~--~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~   81 (295)
                      .++++|... ..+++.|++++|.+..++..  ++.+++|++|++++|.+.+..| .+..+++|++|++++|......+..
T Consensus        19 ~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~   97 (192)
T 1w8a_A           19 GLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM   97 (192)
T ss_dssp             CCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred             CcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHH
Confidence            344444422 22555666666655555432  4555566666666665554444 3555556666666554333333333


Q ss_pred             hhcccCCcEEccccCcCCceeCCcc-cCccccEEeccCCCC
Q 039126           82 IRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSN  121 (295)
Q Consensus        82 ~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~  121 (295)
                      +..+++|++|++++|..-...|..+ .+++|+.|++++|.+
T Consensus        98 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            5555566666665543222223322 255556666655543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.38  E-value=2e-12  Score=101.69  Aligned_cols=85  Identities=11%  Similarity=0.097  Sum_probs=54.5

Q ss_pred             CCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccc-hhcccCC
Q 039126           10 SSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSS-IRHLNKF   88 (295)
Q Consensus        10 p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L   88 (295)
                      +....+.+|+.|++++|.+..++......++|++|++++|.+.+ ++.+..+++|++|++++| .+..+|.. +..+++|
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-LDGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDL   90 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-ECCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred             HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc-ccccccCCCCCEEECCCC-cccccCcchhhcCCCC
Confidence            34446778888888888877775422333478888888887654 366777777777777774 34444433 3566666


Q ss_pred             cEEccccC
Q 039126           89 VARNLKHC   96 (295)
Q Consensus        89 ~~L~l~~~   96 (295)
                      ++|++++|
T Consensus        91 ~~L~L~~N   98 (176)
T 1a9n_A           91 TELILTNN   98 (176)
T ss_dssp             CEEECCSC
T ss_pred             CEEECCCC
Confidence            66666653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.38  E-value=5.5e-12  Score=100.76  Aligned_cols=80  Identities=16%  Similarity=0.086  Sum_probs=35.4

Q ss_pred             CCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccc
Q 039126           16 KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLK   94 (295)
Q Consensus        16 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   94 (295)
                      ++++.|++++|.++.+|..+..+++|++|++++|.+.+..+ .|..+++|++|++++|......+..+..+++|++|+++
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            34445555555444444444445555555555544433322 24444445555554432222222234444444444444


Q ss_pred             c
Q 039126           95 H   95 (295)
Q Consensus        95 ~   95 (295)
                      +
T Consensus       111 ~  111 (193)
T 2wfh_A          111 G  111 (193)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.37  E-value=1.2e-12  Score=99.89  Aligned_cols=64  Identities=25%  Similarity=0.294  Sum_probs=34.6

Q ss_pred             cchhhhCCCCCcEEecCCCcCCcCcc--cccCCCCCCCeeeccCCCCCCCch---hhhhccCCCCcceeecc
Q 039126          145 LPSSIEYLSKLVILNLGNSSRLEGLP--SKICKLKSLQHLNLSCCSNLESFP---NELRNLFPCDLYDIEAH  211 (295)
Q Consensus       145 ~~~~~~~~~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~~~L~~L~l~  211 (295)
                      +|..++.+++|+.|++++|. +..+|  ..+..+++|++|++++|.+.+..+   ..+..+  ++|++|+++
T Consensus        80 ~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l--~~L~~L~l~  148 (149)
T 2je0_A           80 LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL--PQLTYLDGY  148 (149)
T ss_dssp             THHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC--TTCCEETTB
T ss_pred             HHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC--CCcccccCC
Confidence            34444455566666666653 33332  455666666666666665544333   345555  666666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.31  E-value=7e-12  Score=98.51  Aligned_cols=60  Identities=20%  Similarity=0.131  Sum_probs=30.3

Q ss_pred             hCCCCCcEEecCCCcCCcCccc--ccCCCCCCCeeeccCCCCCCCchhh----hhccCCCCcceeecccc
Q 039126          150 EYLSKLVILNLGNSSRLEGLPS--KICKLKSLQHLNLSCCSNLESFPNE----LRNLFPCDLYDIEAHWC  213 (295)
Q Consensus       150 ~~~~~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~l~~~~~~~~~~~~----l~~~~~~~L~~L~l~~~  213 (295)
                      +.+++|+.|++++| .++.+|.  .+..+++|+.|++++|.+. .+|..    +..+  ++|+.|+++++
T Consensus        85 ~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l--~~L~~Ld~~~n  150 (176)
T 1a9n_A           85 QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKV--PQVRVLDFQKV  150 (176)
T ss_dssp             HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHC--TTCSEETTEEC
T ss_pred             hcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHC--CccceeCCCcC
Confidence            44555555555555 2344443  4555555555555555443 23332    4444  56666666554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.30  E-value=2e-11  Score=105.60  Aligned_cols=100  Identities=15%  Similarity=0.095  Sum_probs=60.9

Q ss_pred             CCCCceEEccCccccccchh-hhCCCCCcEEecCCCcCCcCcc-cccCCCCCCC-eeeccCCCCCCCchhhhhccCCCCc
Q 039126          129 FYNIKELSLDGTAINELPSS-IEYLSKLVILNLGNSSRLEGLP-SKICKLKSLQ-HLNLSCCSNLESFPNELRNLFPCDL  205 (295)
Q Consensus       129 ~~~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~~~~~~~~~p-~~l~~l~~L~-~L~l~~~~~~~~~~~~l~~~~~~~L  205 (295)
                      ..+|+.+++.+|.++.++.. |..+++|+.+++..+  +..++ .++.+|++|+ .+++.. ......+..+..+  ++|
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c--~~L  299 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGC--DNL  299 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTC--TTE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCC--ccC
Confidence            45677777777777766653 566777777777765  44443 4567777777 777776 3333333455555  777


Q ss_pred             ceeecccccccccccccchhhhccCCcccEEe
Q 039126          206 YDIEAHWCSSLETLSGLSIIFTKISRNTQSFD  237 (295)
Q Consensus       206 ~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~  237 (295)
                      +.+++++ +.++.++...+   ..+++|+.++
T Consensus       300 ~~l~l~~-n~i~~I~~~aF---~~~~~L~~ly  327 (329)
T 3sb4_A          300 RYVLATG-DKITTLGDELF---GNGVPSKLIY  327 (329)
T ss_dssp             EEEEECS-SCCCEECTTTT---CTTCCCCEEE
T ss_pred             CEEEeCC-CccCccchhhh---cCCcchhhhc
Confidence            7777755 34566655322   3556666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.30  E-value=3.7e-11  Score=95.87  Aligned_cols=126  Identities=16%  Similarity=0.124  Sum_probs=88.6

Q ss_pred             cEEeccCCCCCcccCcCC-CCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCC
Q 039126          112 KKLILSGCSNLMSFPELF-YNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNL  190 (295)
Q Consensus       112 ~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~  190 (295)
                      +.++++++. +.++|..+ .++++|++++|.++.+|..+..+++|+.|++++|......+..+.++++|++|++++|.+.
T Consensus        13 ~~l~~~~~~-l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~   91 (193)
T 2wfh_A           13 TVVRCSNKG-LKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR   91 (193)
T ss_dssp             TEEECTTSC-CSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEcCCCC-CCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence            345666553 44555533 3677888888888888877888888888888887544444456788888888888888777


Q ss_pred             CCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCC
Q 039126          191 ESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKL  244 (295)
Q Consensus       191 ~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l  244 (295)
                      +..+..+..+  ++|++|+++++ .++.++....   ..+++|+.|++++++--
T Consensus        92 ~i~~~~f~~l--~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           92 CIPPRTFDGL--KSLRLLSLHGN-DISVVPEGAF---NDLSALSHLAIGANPLY  139 (193)
T ss_dssp             BCCTTTTTTC--TTCCEEECCSS-CCCBCCTTTT---TTCTTCCEEECCSSCEE
T ss_pred             EeCHHHhCCC--CCCCEEECCCC-CCCeeChhhh---hcCccccEEEeCCCCee
Confidence            6666677777  88888888875 4666665321   46778888888876543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.27  E-value=4.3e-11  Score=94.00  Aligned_cols=122  Identities=14%  Similarity=0.149  Sum_probs=73.1

Q ss_pred             ceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc-chhcccCCcEEcccc
Q 039126           18 LVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS-SIRHLNKFVARNLKH   95 (295)
Q Consensus        18 L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~   95 (295)
                      .+.+++++++++.+|..+  .++|+.|++++|.+.+..+ .+..+++|++|++++| .+..++. .+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence            356666667666666433  2567777777776543333 2566777777777764 3344443 356677777777776


Q ss_pred             CcCCceeCCcc--cCccccEEeccCCCCCcccCcC----CCCCceEEccCccccc
Q 039126           96 CRSLTNLSTSI--HLESLKKLILSGCSNLMSFPEL----FYNIKELSLDGTAINE  144 (295)
Q Consensus        96 ~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~----~~~L~~L~l~~~~i~~  144 (295)
                      | .++.++...  .+++|+.|++++|.+. .+|..    +.+|++|++++|.+..
T Consensus        86 N-~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           86 N-KLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             S-CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             C-CccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeec
Confidence            4 344444432  3677777777776543 34432    3456777777777663

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.17  E-value=4.7e-10  Score=87.97  Aligned_cols=125  Identities=18%  Similarity=0.143  Sum_probs=69.3

Q ss_pred             cEEeccCCCCCcccCcC-CCCCceEEccCccccccchh-hhCCCCCcEEecCCCcCCcCcc-cccCCCCCCCeeeccCCC
Q 039126          112 KKLILSGCSNLMSFPEL-FYNIKELSLDGTAINELPSS-IEYLSKLVILNLGNSSRLEGLP-SKICKLKSLQHLNLSCCS  188 (295)
Q Consensus       112 ~~L~l~~~~~~~~~~~~-~~~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~  188 (295)
                      +.++++++. +..+|.. ..++++|++++|.++.++.. ++.+++|++|++++|. +..+| ..+..+++|++|++++|.
T Consensus        10 ~~l~~~~~~-l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           10 TEIRCNSKG-LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             TEEECCSSC-CSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCC-CccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCC
Confidence            344444443 2333332 23556666666666655443 4566667777777663 33443 335666777777777766


Q ss_pred             CCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCC
Q 039126          189 NLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKL  244 (295)
Q Consensus       189 ~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l  244 (295)
                      +.+..+..+..+  ++|++|+++++ .++.++...   ...+++|++|++++++--
T Consensus        88 l~~~~~~~~~~l--~~L~~L~l~~N-~l~~~~~~~---~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           88 LQSLPNGVFDKL--TQLKELALDTN-QLKSVPDGI---FDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCCCCTTTTTTC--TTCCEEECCSS-CCSCCCTTT---TTTCTTCCEEECCSSCBC
T ss_pred             ccccCHHHhhCC--cccCEEECcCC-cceEeCHHH---hcCCcccCEEEecCCCee
Confidence            554444444555  67777777664 355555422   135667777777776543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.16  E-value=1.3e-12  Score=104.84  Aligned_cols=132  Identities=19%  Similarity=0.190  Sum_probs=71.0

Q ss_pred             ccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCceeCCccc
Q 039126           28 IKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIH  107 (295)
Q Consensus        28 ~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~  107 (295)
                      ++.+|..++.+++|++|++++|.+.+ +|.+..+++|++|++++| .++.+|..+..+++|++|++++| .++.++....
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~~~~  113 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLSGIEK  113 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHHHHHH
T ss_pred             HhhhhHHHhcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCCcccc
Confidence            33444456666666666666665433 445555566666666654 33345544455555555555553 2333332112


Q ss_pred             CccccEEeccCCCCCcccCcCCCCCceEEccCccccccch--hhhCCCCCcEEecCCCcCCcCccc----------ccCC
Q 039126          108 LESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPS--SIEYLSKLVILNLGNSSRLEGLPS----------KICK  175 (295)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~--~~~~~~~L~~L~l~~~~~~~~~p~----------~l~~  175 (295)
                      +++                     |++|++++|.++.++.  .+..+++|++|++++|......|.          .+..
T Consensus       114 l~~---------------------L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~  172 (198)
T 1ds9_A          114 LVN---------------------LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             HHH---------------------SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             CCC---------------------CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence            344                     4555555555554443  566677777777777743333332          2566


Q ss_pred             CCCCCeee
Q 039126          176 LKSLQHLN  183 (295)
Q Consensus       176 l~~L~~L~  183 (295)
                      +++|+.|+
T Consensus       173 l~~L~~Ld  180 (198)
T 1ds9_A          173 LPNLKKLD  180 (198)
T ss_dssp             CSSCSEEC
T ss_pred             CCCcEEEC
Confidence            77777776

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.16  E-value=9.7e-13  Score=105.52  Aligned_cols=110  Identities=21%  Similarity=0.253  Sum_probs=61.0

Q ss_pred             chhcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccCcCC---CCCceEEccCccccccchhhhCCCCCcE
Q 039126           81 SIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELF---YNIKELSLDGTAINELPSSIEYLSKLVI  157 (295)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~i~~~~~~~~~~~~L~~  157 (295)
                      .+..+++|++|++++| .++.+|....+++|+.|++++|.+ ..+|..+   ++|++|++++|.++.+| .++.+++|++
T Consensus        43 ~~~~l~~L~~L~ls~n-~l~~l~~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~  119 (198)
T 1ds9_A           43 TLSTLKACKHLALSTN-NIEKISSLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV  119 (198)
T ss_dssp             HHHHTTTCSEEECSEE-EESCCCCHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSE
T ss_pred             HHhcCCCCCEEECCCC-CCccccccccCCCCCEEECCCCCc-ccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCE
Confidence            4445555555555543 233344111245555555555432 2333322   24556666666666655 4667778888


Q ss_pred             EecCCCcCCcCccc--ccCCCCCCCeeeccCCCCCCCch
Q 039126          158 LNLGNSSRLEGLPS--KICKLKSLQHLNLSCCSNLESFP  194 (295)
Q Consensus       158 L~l~~~~~~~~~p~--~l~~l~~L~~L~l~~~~~~~~~~  194 (295)
                      |++++|. +..++.  .+..+++|++|++++|.+.+..|
T Consensus       120 L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A          120 LYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             EEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred             EECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence            8888773 444432  56777888888888776554433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.09  E-value=5.2e-10  Score=87.29  Aligned_cols=100  Identities=14%  Similarity=0.166  Sum_probs=75.2

Q ss_pred             ceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc-hhcccCCcEEcccc
Q 039126           18 LVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS-IRHLNKFVARNLKH   95 (295)
Q Consensus        18 L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~   95 (295)
                      .+.++++++.++.+|..+.  +.|++|++++|.+.+..| .+..+++|++|++++| .+..++.. +..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence            5788999999998887653  789999999998776666 4888999999999985 45555544 67888888888888


Q ss_pred             CcCCceeCCc-c-cCccccEEeccCCCC
Q 039126           96 CRSLTNLSTS-I-HLESLKKLILSGCSN  121 (295)
Q Consensus        96 ~~~l~~l~~~-~-~~~~L~~L~l~~~~~  121 (295)
                      | .++.++.. + .+++|+.|++++|.+
T Consensus        88 N-~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           88 N-QLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             S-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             C-ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            4 45555553 2 367777777777653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.07  E-value=8.7e-10  Score=86.01  Aligned_cols=94  Identities=19%  Similarity=0.198  Sum_probs=77.8

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCCC-CCCCCCCcEeecccccccccccc
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIPS-LSLATNLESLNFQRYTSLLETHS   80 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~   80 (295)
                      +..++++|... .++++.|++++|.++.+ +..+.++++|++|++++|.+.+..+. +..+++|++|++++| .+..++.
T Consensus        18 ~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~   95 (170)
T 3g39_A           18 GKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPR   95 (170)
T ss_dssp             TSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred             CCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCH
Confidence            45677788644 58999999999999988 56689999999999999997655553 789999999999996 5556665


Q ss_pred             -chhcccCCcEEccccCcC
Q 039126           81 -SIRHLNKFVARNLKHCRS   98 (295)
Q Consensus        81 -~~~~l~~L~~L~l~~~~~   98 (295)
                       .+..+++|++|++++|..
T Consensus        96 ~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           96 GAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             TTTTTCTTCCEEECCSSCB
T ss_pred             HHhcCCCCCCEEEeCCCCC
Confidence             588999999999999753

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.05  E-value=1.1e-09  Score=85.80  Aligned_cols=101  Identities=15%  Similarity=0.171  Sum_probs=82.0

Q ss_pred             ceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc-hhcccCCcEEcccc
Q 039126           18 LVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS-IRHLNKFVARNLKH   95 (295)
Q Consensus        18 L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~   95 (295)
                      -+.++++++.++.+|..+.  +.|++|++++|.+.+..| .+..+++|++|++++| .+..+|.. +..+++|++|++++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence            3688999999999987664  889999999999876666 5899999999999995 56667655 68899999999998


Q ss_pred             CcCCceeCCc-c-cCccccEEeccCCCCC
Q 039126           96 CRSLTNLSTS-I-HLESLKKLILSGCSNL  122 (295)
Q Consensus        96 ~~~l~~l~~~-~-~~~~L~~L~l~~~~~~  122 (295)
                      | .++.++.. + .+++|+.|++++|.+.
T Consensus        91 N-~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 N-HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             S-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             C-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            5 56677765 3 4899999999998643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.05  E-value=9.1e-10  Score=86.26  Aligned_cols=99  Identities=16%  Similarity=0.182  Sum_probs=48.6

Q ss_pred             cEEecCCCCCCCcCCC-CCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCceeCCcc--cCccccEEeccC
Q 039126           42 KSINLNHSEHLTEIPS-LSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSG  118 (295)
Q Consensus        42 ~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~  118 (295)
                      +.++++++.+ +.+|. +.  ++|++|++++|......|..+..+++|++|++++| .++.++...  .+++|+.|++++
T Consensus        15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence            4555555543 34442 22  55566666654332223444555666666666653 444444432  255666666665


Q ss_pred             CCCCcccCcC----CCCCceEEccCcccccc
Q 039126          119 CSNLMSFPEL----FYNIKELSLDGTAINEL  145 (295)
Q Consensus       119 ~~~~~~~~~~----~~~L~~L~l~~~~i~~~  145 (295)
                      |++. .+|..    +.+|++|++++|.+...
T Consensus        91 N~l~-~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           91 NHLK-SIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             SCCC-CCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             Cccc-eeCHHHhccccCCCEEEeCCCCcccc
Confidence            5432 33322    23455566666655533

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.94  E-value=7.4e-08  Score=85.42  Aligned_cols=207  Identities=10%  Similarity=0.087  Sum_probs=137.2

Q ss_pred             CCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeeccccccccccccchhcccCCcEEc
Q 039126           16 KNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARN   92 (295)
Q Consensus        16 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   92 (295)
                      .+|+.++++.+ ++.++. .+.++ +|+.+.+..+ + ..++  .|..|++|+.++++. +.+..++.......+|+.+.
T Consensus       135 ~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~-l-~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~  209 (401)
T 4fdw_A          135 SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST-L-EQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVL  209 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT-C-CEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEE
T ss_pred             CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC-c-cEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEE
Confidence            36888888765 666653 34554 6888888763 2 3343  588889999999987 46666765544467888888


Q ss_pred             cccCcCCceeCCcc--cCccccEEeccCCCCCcccCcC-C--CCCceEEccCccccccc-hhhhCCCCCcEEecCCCcCC
Q 039126           93 LKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPEL-F--YNIKELSLDGTAINELP-SSIEYLSKLVILNLGNSSRL  166 (295)
Q Consensus        93 l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~-~--~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~~~  166 (295)
                      +..  .++.++...  ++++|+.+.+..+  +..++.. +  .+|+.+.+ .+.++.++ ..|..+++|+.+.+.++...
T Consensus       210 lp~--~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~  284 (401)
T 4fdw_A          210 LPV--TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFN  284 (401)
T ss_dssp             CCT--TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred             eCC--chheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCcccc
Confidence            874  366766655  3788999988764  3333322 1  36778877 44566664 45678889999998775322


Q ss_pred             ----cCc-ccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCC
Q 039126          167 ----EGL-PSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINC  241 (295)
Q Consensus       167 ----~~~-p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c  241 (295)
                          ..+ +.++.+|++|+.+.+.. ....-....+..+  ++|+.+.+.+  +++.+....+   ..+ +|+.+.+.+.
T Consensus       285 ~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c--~~L~~l~lp~--~l~~I~~~aF---~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          285 DDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGN--RKVTQLTIPA--NVTQINFSAF---NNT-GIKEVKVEGT  355 (401)
T ss_dssp             CCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTC--CSCCEEEECT--TCCEECTTSS---SSS-CCCEEEECCS
T ss_pred             CCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCC--CCccEEEECc--cccEEcHHhC---CCC-CCCEEEEcCC
Confidence                123 35688899999999885 3333233345555  8899998854  3666665322   456 8888888764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.90  E-value=1.1e-08  Score=88.32  Aligned_cols=188  Identities=10%  Similarity=0.014  Sum_probs=117.3

Q ss_pred             CCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccc---cccccc-cchhcccCC
Q 039126           15 PKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYT---SLLETH-SSIRHLNKF   88 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~---~~~~~~-~~~~~l~~L   88 (295)
                      +++|+.+++++ .++.++ ..+.+|++|+.|++..|.+....+ .|..+.++.++......   ....+. ..+..+..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            78888888888 788776 456888889999988887653333 47777777777654411   011111 112222222


Q ss_pred             c--------------------------EEccccCcCCceeCCcc-cCccccEEeccCCCCCcccCcC----CCCCceEEc
Q 039126           89 V--------------------------ARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPEL----FYNIKELSL  137 (295)
Q Consensus        89 ~--------------------------~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~----~~~L~~L~l  137 (295)
                      +                          .+.+.+.-......... .+++|+.+++++|+ +..++..    +.+|+.+++
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l  257 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKL  257 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEEC
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEEC
Confidence            2                          22222210000000000 26789999999875 4455542    447889999


Q ss_pred             cCccccccch-hhhCCCCCc-EEecCCCcCCcCc-ccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceee
Q 039126          138 DGTAINELPS-SIEYLSKLV-ILNLGNSSRLEGL-PSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIE  209 (295)
Q Consensus       138 ~~~~i~~~~~-~~~~~~~L~-~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~  209 (295)
                      .++ ++.++. .|..+++|+ .+++..  .+..+ +.++.+|++|+.++++.+.+..-.+..+..+  ++|+.+.
T Consensus       258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~--~~L~~ly  327 (329)
T 3sb4_A          258 PHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG--VPSKLIY  327 (329)
T ss_dssp             CTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT--CCCCEEE
T ss_pred             Ccc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCC--cchhhhc
Confidence            887 777755 467889999 999987  45555 4678899999999998876554444455555  7777765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.88  E-value=4.3e-10  Score=98.85  Aligned_cols=59  Identities=15%  Similarity=0.045  Sum_probs=30.0

Q ss_pred             CCCCcEEecCCCCCCCcCC-C----C-CCCCCCcEeeccccccccccc-cchhcccCCcEEccccC
Q 039126           38 LVNLKSINLNHSEHLTEIP-S----L-SLATNLESLNFQRYTSLLETH-SSIRHLNKFVARNLKHC   96 (295)
Q Consensus        38 l~~L~~L~L~~~~~~~~~~-~----~-~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~   96 (295)
                      +..|+.|++++|.+..... .    + ...++|++|++++|....... .....+++|+.|++++|
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n  136 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN  136 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence            3556777777776533221 1    1 123567777776654322211 12334556666666664

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.87  E-value=1.7e-10  Score=101.47  Aligned_cols=151  Identities=15%  Similarity=0.085  Sum_probs=72.5

Q ss_pred             CCCcEeeccccccccccccchhc-----ccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCCcccC--------
Q 039126           62 TNLESLNFQRYTSLLETHSSIRH-----LNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFP--------  126 (295)
Q Consensus        62 ~~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~--------  126 (295)
                      +.|++|++++|.........+..     ..+|+.|++++|..-..-...+  .+++|+.|++++|.+...-.        
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            45666666665432222112211     2466666666653211111111  14556666666665432111        


Q ss_pred             cCCCCCceEEccCccccc-----cchhhhCCCCCcEEecCCCcCCc----CcccccCCCCCCCeeeccCCCCCCC----c
Q 039126          127 ELFYNIKELSLDGTAINE-----LPSSIEYLSKLVILNLGNSSRLE----GLPSKICKLKSLQHLNLSCCSNLES----F  193 (295)
Q Consensus       127 ~~~~~L~~L~l~~~~i~~-----~~~~~~~~~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~~~~~----~  193 (295)
                      ....+|++|++++|.++.     ++..+...++|++|++++|....    .++..+..++.|++|++++|.+.+.    +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            122456666666666642     33334555666666666664211    1233445556666666666655432    2


Q ss_pred             hhhhhccCCCCcceeeccccc
Q 039126          194 PNELRNLFPCDLYDIEAHWCS  214 (295)
Q Consensus       194 ~~~l~~~~~~~L~~L~l~~~~  214 (295)
                      ...+...  ++|++|++++|.
T Consensus       232 ~~~L~~~--~~L~~L~Ls~N~  250 (372)
T 3un9_A          232 ARAAREH--PSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHC--SSCCEEECTTSS
T ss_pred             HHHHHhC--CCCCEEeccCCC
Confidence            2233333  566666666653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.80  E-value=1.8e-08  Score=87.55  Aligned_cols=98  Identities=18%  Similarity=0.173  Sum_probs=48.2

Q ss_pred             EecCCC-CccccchhhcCCCCCcEEecCC-CCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccccCc
Q 039126           21 PEIPRN-SIKQLWKVVQRLVNLKSINLNH-SEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCR   97 (295)
Q Consensus        21 L~l~~~-~~~~l~~~~~~l~~L~~L~L~~-~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~   97 (295)
                      ++.+++ .++.+|. +..+++|+.|+|++ |.+.+..+ .|..+++|++|+|++|......|..+..+++|++|+|++| 
T Consensus        13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-   90 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-   90 (347)
T ss_dssp             EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-
T ss_pred             EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-
Confidence            455554 5555555 55555566666654 54433332 3555555666666554322222334555555555555553 


Q ss_pred             CCceeCCccc-CccccEEeccCCC
Q 039126           98 SLTNLSTSIH-LESLKKLILSGCS  120 (295)
Q Consensus        98 ~l~~l~~~~~-~~~L~~L~l~~~~  120 (295)
                      .++.+|.... ...|+.|++.+|.
T Consensus        91 ~l~~~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           91 ALESLSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             ccceeCHHHcccCCceEEEeeCCC
Confidence            3344443321 2225555555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.79  E-value=1.6e-08  Score=87.87  Aligned_cols=92  Identities=17%  Similarity=0.193  Sum_probs=76.6

Q ss_pred             CCCcCCCCCCCCCceeEecCC-CCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc
Q 039126            5 PFKSLSSIIRPKNLVSPEIPR-NSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS   81 (295)
Q Consensus         5 ~~~~~p~~~~~~~L~~L~l~~-~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~   81 (295)
                      .+..+|.+..+++|+.|+|++ |.+..++ ..++++++|++|+|++|.+.+..| .|..+++|++|+|++| .+..+|..
T Consensus        20 ~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~   98 (347)
T 2ifg_A           20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWK   98 (347)
T ss_dssp             CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCST
T ss_pred             CCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHH
Confidence            577899944689999999996 9999887 568999999999999999877777 4899999999999995 55667655


Q ss_pred             -hhcccCCcEEccccCcC
Q 039126           82 -IRHLNKFVARNLKHCRS   98 (295)
Q Consensus        82 -~~~l~~L~~L~l~~~~~   98 (295)
                       +..+. |+.|++.+|..
T Consensus        99 ~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           99 TVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             TTCSCC-CCEEECCSSCC
T ss_pred             HcccCC-ceEEEeeCCCc
Confidence             44454 99999998653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.76  E-value=2.9e-07  Score=81.58  Aligned_cols=208  Identities=10%  Similarity=0.131  Sum_probs=135.1

Q ss_pred             CCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc-chhcccCCcEEc
Q 039126           16 KNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS-SIRHLNKFVARN   92 (295)
Q Consensus        16 ~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~   92 (295)
                      .+|+.+.++. .+..++ ..+.+|.+|+.+++..|.+..-.. .|. +.+|+.+.+..  .++.++. .+.++++|+.++
T Consensus       157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~  232 (401)
T 4fdw_A          157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIE  232 (401)
T ss_dssp             CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT--TCCEECTTTTTTCTTCCCEE
T ss_pred             CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC--chheehhhHhhCCCCCCEEe
Confidence            4688888875 577665 557889999999998886543333 355 67888888875  3666654 477888899888


Q ss_pred             cccCcCCceeCCccc-CccccEEeccCCCCCcccCc----CCCCCceEEccCcccc-----ccc-hhhhCCCCCcEEecC
Q 039126           93 LKHCRSLTNLSTSIH-LESLKKLILSGCSNLMSFPE----LFYNIKELSLDGTAIN-----ELP-SSIEYLSKLVILNLG  161 (295)
Q Consensus        93 l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~i~-----~~~-~~~~~~~~L~~L~l~  161 (295)
                      +..  .++.++...+ -.+|+.+.+..+  +..++.    .+.+|+.+.+.++.+.     .++ ..|..+++|+.+.+.
T Consensus       233 l~~--~l~~I~~~aF~~~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          233 IPE--NVSTIGQEAFRESGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP  308 (401)
T ss_dssp             CCT--TCCEECTTTTTTCCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred             cCC--CccCccccccccCCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence            875  3566665442 467888888553  334432    3447788888776554     343 356778889999888


Q ss_pred             CCcCCcCcc-cccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecC
Q 039126          162 NSSRLEGLP-SKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFIN  240 (295)
Q Consensus       162 ~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~  240 (295)
                      .  .+..++ .++.+|.+|+.+.+..+  ...+.......  .+|+.+.+.+. ....+....  +.+...+++.+.+-.
T Consensus       309 ~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~--~~L~~l~l~~n-~~~~l~~~~--F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          309 E--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNN--TGIKEVKVEGT-TPPQVFEKV--WYGFPDDITVIRVPA  379 (401)
T ss_dssp             T--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSS--SCCCEEEECCS-SCCBCCCSS--CCCSCTTCCEEEECG
T ss_pred             C--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCC--CCCCEEEEcCC-CCccccccc--ccCCCCCccEEEeCH
Confidence            4  355554 56778899999988664  34444433332  38888888875 344444321  112224667776654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.59  E-value=3.8e-08  Score=76.47  Aligned_cols=92  Identities=12%  Similarity=0.161  Sum_probs=66.5

Q ss_pred             CCcEEecCCCcCCcCcccccCCCCCCCeeeccCCC-CCCCchhhhhcc--CCCCcceeecccccccccccccchhhhccC
Q 039126          154 KLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCS-NLESFPNELRNL--FPCDLYDIEAHWCSSLETLSGLSIIFTKIS  230 (295)
Q Consensus       154 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  230 (295)
                      .|++|++++|......-..+.++++|++|++++|. +.+.....+..+  .+++|++|++++|.++++.....  + ..+
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~--L-~~~  138 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA--L-HHF  138 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH--G-GGC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH--H-hcC
Confidence            68888888886333333456788999999999986 444455555542  12579999999999888865422  2 468


Q ss_pred             CcccEEeecCCCCChhhh
Q 039126          231 RNTQSFDFINCFKLHQNV  248 (295)
Q Consensus       231 ~~L~~L~l~~c~~l~~~~  248 (295)
                      ++|++|++++|+.+++..
T Consensus       139 ~~L~~L~L~~c~~Itd~g  156 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKEKE  156 (176)
T ss_dssp             TTCCEEEEESCTTCCCHH
T ss_pred             CCCCEEECCCCCCCCchH
Confidence            999999999999998863

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.57  E-value=6.7e-08  Score=84.39  Aligned_cols=138  Identities=14%  Similarity=0.131  Sum_probs=83.4

Q ss_pred             CccccEEeccCCCCCcccCc-CCCCCceEEccCcccc-ccchhhh--CCCCCcEEecCCCcC-------CcCccccc--C
Q 039126          108 LESLKKLILSGCSNLMSFPE-LFYNIKELSLDGTAIN-ELPSSIE--YLSKLVILNLGNSSR-------LEGLPSKI--C  174 (295)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~-~~~~L~~L~l~~~~i~-~~~~~~~--~~~~L~~L~l~~~~~-------~~~~p~~l--~  174 (295)
                      +++|+.|.+++|... .++. ...+|++|++..+.+. .....+.  .+++|++|+++.+..       +..+...+  .
T Consensus       171 ~P~L~~L~L~g~~~l-~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~  249 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNL-SIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD  249 (362)
T ss_dssp             CTTCCEEEEECCBTC-BCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred             CCCCcEEEEeCCCCc-eeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence            567777777665211 2221 2457888888877765 2222333  678999998853211       11121222  3


Q ss_pred             CCCCCCeeeccCCCCCCCchhhhhc---cCCCCcceeeccccccccccccc-chhhhccCCcccEEeecCCCCChhhhHh
Q 039126          175 KLKSLQHLNLSCCSNLESFPNELRN---LFPCDLYDIEAHWCSSLETLSGL-SIIFTKISRNTQSFDFINCFKLHQNVVQ  250 (295)
Q Consensus       175 ~l~~L~~L~l~~~~~~~~~~~~l~~---~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~  250 (295)
                      .+++|++|++.+|.+.+..+..+..   +  ++|++|+++.+ .+++.... .......+++|+.|++++|. +.+...+
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~--~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~  325 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDIL--PQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKK  325 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSG--GGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccC--CCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc-CCHHHHH
Confidence            5889999999998876555444442   3  89999999864 46653211 11111467899999999884 6655433

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.51  E-value=3.6e-08  Score=76.59  Aligned_cols=103  Identities=13%  Similarity=0.098  Sum_probs=72.8

Q ss_pred             CCceEEccCcccc-ccchhhhCCCCCcEEecCCCcCCcCcc-cccCCC----CCCCeeeccCCC-CCCCchhhhhccCCC
Q 039126          131 NIKELSLDGTAIN-ELPSSIEYLSKLVILNLGNSSRLEGLP-SKICKL----KSLQHLNLSCCS-NLESFPNELRNLFPC  203 (295)
Q Consensus       131 ~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~l~~l----~~L~~L~l~~~~-~~~~~~~~l~~~~~~  203 (295)
                      .|++|++++|.++ .--..+..+++|++|++++|..++... ..+..+    ++|++|++++|. +++.....+..+  +
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~--~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF--R  139 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC--T
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC--C
Confidence            4667777777766 223346789999999999998775422 335443    579999999996 555666777776  9


Q ss_pred             CcceeecccccccccccccchhhhccCCcccE
Q 039126          204 DLYDIEAHWCSSLETLSGLSIIFTKISRNTQS  235 (295)
Q Consensus       204 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~  235 (295)
                      +|++|++++|+.+++.......+...+|+++.
T Consensus       140 ~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             TCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred             CCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence            99999999999988855333333445666543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.50  E-value=2.1e-07  Score=81.20  Aligned_cols=176  Identities=14%  Similarity=0.166  Sum_probs=95.2

Q ss_pred             chhhcCCCCCcEEecCCCCCC---------CcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCce
Q 039126           32 WKVVQRLVNLKSINLNHSEHL---------TEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTN  101 (295)
Q Consensus        32 ~~~~~~l~~L~~L~L~~~~~~---------~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~  101 (295)
                      ..++.++++|+.|.+......         +.+. -+..+++|+.|++++|... .++. + .+++|+.|++..|..-..
T Consensus       132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~  208 (362)
T 2ra8_A          132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDS  208 (362)
T ss_dssp             HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHH
T ss_pred             HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChH
Confidence            344556667777766554221         0111 1345667777777665322 2222 2 266777777765432111


Q ss_pred             eCCcc---cCccccEEeccCC--CCCcc--------c-C-cCCCCCceEEccCccccc-cchhh---hCCCCCcEEecCC
Q 039126          102 LSTSI---HLESLKKLILSGC--SNLMS--------F-P-ELFYNIKELSLDGTAINE-LPSSI---EYLSKLVILNLGN  162 (295)
Q Consensus       102 l~~~~---~~~~L~~L~l~~~--~~~~~--------~-~-~~~~~L~~L~l~~~~i~~-~~~~~---~~~~~L~~L~l~~  162 (295)
                      ....+   .+++|++|+|+.+  ...+.        . . ..+++|++|++.+|.+.. .+..+   ..+++|++|+++.
T Consensus       209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~  288 (362)
T 2ra8_A          209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA  288 (362)
T ss_dssp             HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred             HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence            11011   3567777766421  10010        1 1 235688888888887762 22222   3578899999988


Q ss_pred             CcCCcC----cccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccc
Q 039126          163 SSRLEG----LPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWC  213 (295)
Q Consensus       163 ~~~~~~----~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~  213 (295)
                      |.....    ++..+..+++|+.|++++|.+.+.....+...   -...+++++.
T Consensus       289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a---lg~~~~~~~~  340 (362)
T 2ra8_A          289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS---LPMKIDVSDS  340 (362)
T ss_dssp             SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH---CCSEEECCSB
T ss_pred             CCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH---cCCEEEecCC
Confidence            743322    33344567899999999987665555555442   1244566553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.07  E-value=0.00015  Score=63.76  Aligned_cols=117  Identities=14%  Similarity=0.145  Sum_probs=58.0

Q ss_pred             CccccEEeccCCCCCcccCc----CCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcc-cccCCCCCCCee
Q 039126          108 LESLKKLILSGCSNLMSFPE----LFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLP-SKICKLKSLQHL  182 (295)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L  182 (295)
                      +..++.+.+..+.  ..+..    ....++.+......+.  ...+..+.+|+.+.+..+  +..++ .++.+|.+|+.+
T Consensus       252 ~~~l~~~~~~~~~--~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i  325 (394)
T 4fs7_A          252 CTDLESISIQNNK--LRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSI  325 (394)
T ss_dssp             CSSCCEEEECCTT--CEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEE
T ss_pred             cccceeEEcCCCc--ceeeccccccccccceeccCceeec--cccccccccccccccccc--cceechhhhcCCCCCCEE
Confidence            6677777776542  11211    1223444433322211  112445666777766543  44333 346667777777


Q ss_pred             eccCCCCCCCch-hhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeec
Q 039126          183 NLSCCSNLESFP-NELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFI  239 (295)
Q Consensus       183 ~l~~~~~~~~~~-~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~  239 (295)
                      ++..+  ...+. ..+.++  .+|+.+.+..  +++.+....+   ..|.+|+.+.+.
T Consensus       326 ~lp~~--v~~I~~~aF~~c--~~L~~i~lp~--~l~~I~~~aF---~~C~~L~~i~lp  374 (394)
T 4fs7_A          326 DLPYL--VEEIGKRSFRGC--TSLSNINFPL--SLRKIGANAF---QGCINLKKVELP  374 (394)
T ss_dssp             CCCTT--CCEECTTTTTTC--TTCCEECCCT--TCCEECTTTB---TTCTTCCEEEEE
T ss_pred             EeCCc--ccEEhHHhccCC--CCCCEEEECc--cccEehHHHh---hCCCCCCEEEEC
Confidence            76542  23332 234444  6777776653  2455544221   456667666664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.00  E-value=6.1e-06  Score=68.63  Aligned_cols=93  Identities=17%  Similarity=0.197  Sum_probs=52.1

Q ss_pred             EecCCCCccccch----hhcCCCCCcEEecCCCCCCC--cCCC-CCCCCCCcEeeccccccccccccchhccc--CCcEE
Q 039126           21 PEIPRNSIKQLWK----VVQRLVNLKSINLNHSEHLT--EIPS-LSLATNLESLNFQRYTSLLETHSSIRHLN--KFVAR   91 (295)
Q Consensus        21 L~l~~~~~~~l~~----~~~~l~~L~~L~L~~~~~~~--~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L   91 (295)
                      ++++.|....++.    ....+++|+.|+|++|.+.+  .+|. +..+++|++|+|++|. +..+. .+..+.  +|+.|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceE
Confidence            5556664433321    12567777777777777654  3332 4567777777777743 33331 233333  77777


Q ss_pred             ccccCcCCceeCCc-------c-cCccccEEe
Q 039126           92 NLKHCRSLTNLSTS-------I-HLESLKKLI  115 (295)
Q Consensus        92 ~l~~~~~l~~l~~~-------~-~~~~L~~L~  115 (295)
                      ++++|+.-..+|..       + .+++|+.|+
T Consensus       226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            77776654444321       1 267777665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.97  E-value=3.2e-06  Score=66.49  Aligned_cols=111  Identities=13%  Similarity=0.042  Sum_probs=51.3

Q ss_pred             hhhcCCCCCcEEecCCC-CCCCcCC-----CCCCCCCCcEeecccccccc----ccccchhcccCCcEEccccCcCCce-
Q 039126           33 KVVQRLVNLKSINLNHS-EHLTEIP-----SLSLATNLESLNFQRYTSLL----ETHSSIRHLNKFVARNLKHCRSLTN-  101 (295)
Q Consensus        33 ~~~~~l~~L~~L~L~~~-~~~~~~~-----~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~-  101 (295)
                      ..+...+.|+.|+|++| .+.....     .+...+.|++|++++|....    .+...+...+.|++|++++|..-.. 
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34455555666666655 4322111     13445556666666543222    1222334445566666665432111 


Q ss_pred             ---eCCcc-cCccccEEec--cCCCCCcc----cCc---CCCCCceEEccCcccc
Q 039126          102 ---LSTSI-HLESLKKLIL--SGCSNLMS----FPE---LFYNIKELSLDGTAIN  143 (295)
Q Consensus       102 ---l~~~~-~~~~L~~L~l--~~~~~~~~----~~~---~~~~L~~L~l~~~~i~  143 (295)
                         +...+ ..++|+.|++  ++|.+..+    +..   ...+|++|++++|.+.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               11111 2455666666  55543321    111   1235667777776654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.85  E-value=1.1e-05  Score=63.47  Aligned_cols=93  Identities=10%  Similarity=0.028  Sum_probs=47.7

Q ss_pred             hhhhCCCCCcEEecCCCcCCcC----cccccCCCCCCCeeeccCCCCCCCc----hhhhhccCCCCcceeec--cccccc
Q 039126          147 SSIEYLSKLVILNLGNSSRLEG----LPSKICKLKSLQHLNLSCCSNLESF----PNELRNLFPCDLYDIEA--HWCSSL  216 (295)
Q Consensus       147 ~~~~~~~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~~~~~~----~~~l~~~~~~~L~~L~l--~~~~~l  216 (295)
                      ..+...++|++|++++|.....    +...+...+.|++|++++|.+.+..    ...+...  ++|++|++  +++ .+
T Consensus        59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n--~~L~~L~L~~~~N-~i  135 (185)
T 1io0_A           59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSN--TSLIELRIDNQSQ-PL  135 (185)
T ss_dssp             HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGC--SSCCEEECCCCSS-CC
T ss_pred             HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhC--CCceEEEecCCCC-CC
Confidence            3344556666666666642211    2223444566777777776655432    3333333  66777777  443 34


Q ss_pred             cccccc-chhhhccCCcccEEeecCCC
Q 039126          217 ETLSGL-SIIFTKISRNTQSFDFINCF  242 (295)
Q Consensus       217 ~~~~~~-~~~~~~~~~~L~~L~l~~c~  242 (295)
                      ++.... +.......++|++|++++|.
T Consensus       136 ~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          136 GNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            432211 11112345678888887764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.83  E-value=0.0012  Score=57.90  Aligned_cols=54  Identities=15%  Similarity=0.306  Sum_probs=32.7

Q ss_pred             CCceeEecCCCCccccc-hhhcCCCCCcEEecCCCC--CCCcCC--CCCCCCCCcEeecc
Q 039126           16 KNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSE--HLTEIP--SLSLATNLESLNFQ   70 (295)
Q Consensus        16 ~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~--~~~~~~--~~~~l~~L~~L~l~   70 (295)
                      ..|+.+.++.+ ++.+. .++.+|.+|+.+.+..+.  -+..+.  .|..+.+|+.+.+.
T Consensus        64 ~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~  122 (394)
T 4gt6_A           64 YVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL  122 (394)
T ss_dssp             SCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG
T ss_pred             CcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccC
Confidence            35888888754 66665 456788888888876542  122222  35666666665553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.71  E-value=0.0024  Score=56.07  Aligned_cols=98  Identities=15%  Similarity=0.191  Sum_probs=57.1

Q ss_pred             CCCCceeEecCCC---Cccccc-hhhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeecccccccccccc-chhccc
Q 039126           14 RPKNLVSPEIPRN---SIKQLW-KVVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETHS-SIRHLN   86 (295)
Q Consensus        14 ~~~~L~~L~l~~~---~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~   86 (295)
                      .+.+|+.+.+..+   .++.+. ..+.+|..|+.+.+..+  ...++  .+..+.+|+.+.+..  .+..+.. .+..+.
T Consensus        85 ~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~  160 (394)
T 4gt6_A           85 NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPE--GVTSVADGMFSYCY  160 (394)
T ss_dssp             TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCT
T ss_pred             CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccccccc--eeeeecccceeccc
Confidence            4788888877654   255554 44577788887777655  22333  477788888888754  3344433 366677


Q ss_pred             CCcEEccccCcCCceeCCccc-CccccEEecc
Q 039126           87 KFVARNLKHCRSLTNLSTSIH-LESLKKLILS  117 (295)
Q Consensus        87 ~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~  117 (295)
                      .|+.+.+..  .++.+....+ ...|+.+.+.
T Consensus       161 ~L~~i~~~~--~~~~I~~~aF~~~~l~~i~ip  190 (394)
T 4gt6_A          161 SLHTVTLPD--SVTAIEERAFTGTALTQIHIP  190 (394)
T ss_dssp             TCCEEECCT--TCCEECTTTTTTCCCSEEEEC
T ss_pred             ccccccccc--eeeEeccccccccceeEEEEC
Confidence            777777654  2333333221 3345555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.69  E-value=0.0029  Score=55.54  Aligned_cols=96  Identities=14%  Similarity=0.141  Sum_probs=51.5

Q ss_pred             CCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchh-hhhccCCCCcceee
Q 039126          131 NIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPN-ELRNLFPCDLYDIE  209 (295)
Q Consensus       131 ~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~~~~~~L~~L~  209 (295)
                      .++.+.+..+...--...+..+..++.+......   .....+..+.+|+.+.+..+  ...+.. .+..+  .+|+.++
T Consensus       254 ~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c--~~L~~i~  326 (394)
T 4fs7_A          254 DLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESC--TSLVSID  326 (394)
T ss_dssp             SCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC--TTCCEEC
T ss_pred             cceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccccccccccc--cceechhhhcCC--CCCCEEE
Confidence            4445554443222122234455666666554321   11234667888888888663  333333 34444  8888888


Q ss_pred             cccccccccccccchhhhccCCcccEEee
Q 039126          210 AHWCSSLETLSGLSIIFTKISRNTQSFDF  238 (295)
Q Consensus       210 l~~~~~l~~~~~~~~~~~~~~~~L~~L~l  238 (295)
                      +.+  .++.+....+   ..|.+|+.+.+
T Consensus       327 lp~--~v~~I~~~aF---~~c~~L~~i~l  350 (394)
T 4fs7_A          327 LPY--LVEEIGKRSF---RGCTSLSNINF  350 (394)
T ss_dssp             CCT--TCCEECTTTT---TTCTTCCEECC
T ss_pred             eCC--cccEEhHHhc---cCCCCCCEEEE
Confidence            853  3566654322   35666766665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.68  E-value=7e-05  Score=62.25  Aligned_cols=64  Identities=27%  Similarity=0.348  Sum_probs=34.4

Q ss_pred             CCCCceEEccCcccccc---chhhhCCCCCcEEecCCCcCCcCcccccCCCC--CCCeeeccCCCCCCCch
Q 039126          129 FYNIKELSLDGTAINEL---PSSIEYLSKLVILNLGNSSRLEGLPSKICKLK--SLQHLNLSCCSNLESFP  194 (295)
Q Consensus       129 ~~~L~~L~l~~~~i~~~---~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~--~L~~L~l~~~~~~~~~~  194 (295)
                      +++|+.|++++|.++.+   +..+..+++|+.|++++|. +..+ ..+..+.  +|++|++++|++.+.+|
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccC
Confidence            44566666666666533   3444566666666666663 3332 1223233  66666666666554443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.18  E-value=0.033  Score=48.29  Aligned_cols=52  Identities=12%  Similarity=0.169  Sum_probs=30.1

Q ss_pred             CCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeec
Q 039126           14 RPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNF   69 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l   69 (295)
                      ...+++.+.++.. ++.++ .++.+|.+|+.+.+..+  ...+.  .|..+ +|+.+.+
T Consensus        44 ~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~   98 (379)
T 4h09_A           44 DRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTG   98 (379)
T ss_dssp             GGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEE
T ss_pred             cccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEEC
Confidence            3566777777643 66665 34677788888877554  22333  35555 3555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.91  E-value=0.065  Score=46.39  Aligned_cols=98  Identities=12%  Similarity=0.188  Sum_probs=45.5

Q ss_pred             CCceEEccCccccccch-hhhCCCCCcEEecCCCcCCcCcc-cccCCCCCCCeeeccCCCCCCCchhhhhccCCCCccee
Q 039126          131 NIKELSLDGTAINELPS-SIEYLSKLVILNLGNSSRLEGLP-SKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDI  208 (295)
Q Consensus       131 ~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L  208 (295)
                      .|+.+.+..+ ++.+.. .+..+.+|+.+.+..+  +..++ ..+.+|.+|+.+.+.++....-....+.++  .+|+++
T Consensus       241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c--~~L~~i  315 (379)
T 4h09_A          241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDC--VKLSSV  315 (379)
T ss_dssp             SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTC--TTCCEE
T ss_pred             cceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCC--CCCCEE
Confidence            4445544332 333322 2345556666666442  33333 345566667766665543322222333443  666666


Q ss_pred             ecccccccccccccchhhhccCCcccEEee
Q 039126          209 EAHWCSSLETLSGLSIIFTKISRNTQSFDF  238 (295)
Q Consensus       209 ~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l  238 (295)
                      .+..  .++.+....+   ..|.+|+.+.+
T Consensus       316 ~lp~--~l~~I~~~aF---~~C~~L~~i~i  340 (379)
T 4h09_A          316 TLPT--ALKTIQVYAF---KNCKALSTISY  340 (379)
T ss_dssp             ECCT--TCCEECTTTT---TTCTTCCCCCC
T ss_pred             EcCc--cccEEHHHHh---hCCCCCCEEEE
Confidence            6642  2444443211   34455555444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.70  E-value=0.019  Score=41.94  Aligned_cols=52  Identities=13%  Similarity=0.119  Sum_probs=31.2

Q ss_pred             eEecCCCCcc--ccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccc
Q 039126           20 SPEIPRNSIK--QLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYT   73 (295)
Q Consensus        20 ~L~l~~~~~~--~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~   73 (295)
                      +++.+++.++  .+|..+.  .+|++|+|++|.+..-.+ .|..+++|++|+|++|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            5666666666  6664321  346777777776543222 36667777777777653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.59  E-value=0.011  Score=46.44  Aligned_cols=94  Identities=13%  Similarity=0.022  Sum_probs=42.2

Q ss_pred             hhhCCCCCcEEecCCCcCCc----CcccccCCCCCCCeeeccCCCCCCCchhhhhccC--CCCcceeeccccc--ccccc
Q 039126          148 SIEYLSKLVILNLGNSSRLE----GLPSKICKLKSLQHLNLSCCSNLESFPNELRNLF--PCDLYDIEAHWCS--SLETL  219 (295)
Q Consensus       148 ~~~~~~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~--~~~L~~L~l~~~~--~l~~~  219 (295)
                      .+..-+.|+.|++++|..-.    .+...+..-+.|++|++++|.+.+.....+...+  ...|++|+++++.  .+..-
T Consensus        65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~  144 (197)
T 1pgv_A           65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  144 (197)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence            33444556666666653221    1222233445566666666665543333322211  1556777766432  12211


Q ss_pred             cc-cchhhhccCCcccEEeecCC
Q 039126          220 SG-LSIIFTKISRNTQSFDFINC  241 (295)
Q Consensus       220 ~~-~~~~~~~~~~~L~~L~l~~c  241 (295)
                      .. .+......-+.|+.|+++.+
T Consensus       145 g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          145 VEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHHhCCCcCeEeccCC
Confidence            10 01111234456777777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.52  E-value=0.029  Score=44.06  Aligned_cols=80  Identities=20%  Similarity=0.176  Sum_probs=45.6

Q ss_pred             CCceEEccCcccc-----ccchhhhCCCCCcEEecCCCcCCc----CcccccCCCCCCCeeeccCCC--CCC-----Cch
Q 039126          131 NIKELSLDGTAIN-----ELPSSIEYLSKLVILNLGNSSRLE----GLPSKICKLKSLQHLNLSCCS--NLE-----SFP  194 (295)
Q Consensus       131 ~L~~L~l~~~~i~-----~~~~~~~~~~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~--~~~-----~~~  194 (295)
                      .|+.|++++|.+.     .+...+..-+.|+.|+++.|....    .+-+.+..-+.|++|++++|.  ..+     .+.
T Consensus        71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia  150 (197)
T 1pgv_A           71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM  150 (197)
T ss_dssp             CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred             CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence            4556666666654     334444455678888887774322    133345555668888887542  122     233


Q ss_pred             hhhhccCCCCcceeeccc
Q 039126          195 NELRNLFPCDLYDIEAHW  212 (295)
Q Consensus       195 ~~l~~~~~~~L~~L~l~~  212 (295)
                      ..+..-  ++|++|+++.
T Consensus       151 ~aL~~N--~tL~~L~l~~  166 (197)
T 1pgv_A          151 MAIEEN--ESLLRVGISF  166 (197)
T ss_dssp             HHHHHC--SSCCEEECCC
T ss_pred             HHHHhC--CCcCeEeccC
Confidence            344444  7888888764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.91  E-value=0.11  Score=37.81  Aligned_cols=51  Identities=27%  Similarity=0.425  Sum_probs=27.2

Q ss_pred             EEeccCCCCCc--ccCcCCC-CCceEEccCccccccchh-hhCCCCCcEEecCCCc
Q 039126          113 KLILSGCSNLM--SFPELFY-NIKELSLDGTAINELPSS-IEYLSKLVILNLGNSS  164 (295)
Q Consensus       113 ~L~l~~~~~~~--~~~~~~~-~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~~~~  164 (295)
                      .++-+++. +.  .+|..++ ++++|++++|.|+.++.. |..+++|+.|++++|.
T Consensus        12 ~v~Cs~~~-L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRG-LTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSC-CCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCC-CccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            34444433 33  5555444 566666666666655443 3445566666666553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	295
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 30/187 (16%), Positives = 71/187 (37%), Gaps = 11/187 (5%)

Query: 1   WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSL 60
                   ++ +    NL    +  N +K +   +  L NL  ++L ++  ++ +  LS 
Sbjct: 204 ATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN-QISNLAPLSG 261

Query: 61  ATNLESLNFQRY--TSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSG 118
            T L  L       +++          N  +  N     S  +   ++   +L    +S 
Sbjct: 262 LTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD 321

Query: 119 CSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKS 178
            S + S  +L    + L      ++++ S +  L+ +  L+ G++ ++  L   +  L  
Sbjct: 322 ISPVSSLTKL----QRLFFANNKVSDVSS-LANLTNINWLSAGHN-QISDLTP-LANLTR 374

Query: 179 LQHLNLS 185
           +  L L+
Sbjct: 375 ITQLGLN 381

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	295
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.86
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.86
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.83
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.83
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.81
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.78
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.78
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.77
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.69
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.59
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.56
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.49
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.38
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.31
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.29
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.29
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.19
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.07
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.0
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.94
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.88
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.85
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.74
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.84
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.66
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.88
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.84
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.55

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.86  E-value=3.1e-22  Score=170.67  Aligned_cols=222  Identities=14%  Similarity=0.129  Sum_probs=152.0

Q ss_pred             CCCceeEecCCCCcc---ccchhhcCCCCCcEEecCC-CCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCc
Q 039126           15 PKNLVSPEIPRNSIK---QLWKVVQRLVNLKSINLNH-SEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFV   89 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~L~~-~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (295)
                      -.+++.|+|+++.+.   .+|..++++++|++|+|++ |.+.+.+| .+.++++|++|++++|...+..+..+..+..|+
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             cEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            346888999988776   4778889999999999986 67777888 588899999999998766666666678888888


Q ss_pred             EEccccCcCCceeCCcc-cCccccEEeccCCCCCcccCcCCCC----CceEEccCcccc---------------------
Q 039126           90 ARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPELFYN----IKELSLDGTAIN---------------------  143 (295)
Q Consensus        90 ~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~----L~~L~l~~~~i~---------------------  143 (295)
                      .+++++|.....+|..+ .++.++.+++++|...+.+|..+.+    ++.+++++|.++                     
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~  208 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM  208 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSE
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            88888876666666655 3788888888888777677765442    245566665554                     


Q ss_pred             ---ccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccc-cc
Q 039126          144 ---ELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLE-TL  219 (295)
Q Consensus       144 ---~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~-~~  219 (295)
                         .+|..++.+++++.+++.+|.....+ ..++.+++|+.|++++|.+.+.+|..+..+  ++|++|+++++. ++ .+
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L--~~L~~L~Ls~N~-l~g~i  284 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQL--KFLHSLNVSFNN-LCGEI  284 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGC--TTCCEEECCSSE-EEEEC
T ss_pred             ccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCC--CCCCEEECcCCc-ccccC
Confidence               22333445556666666666433333 346666777777777776666677777666  677777777654 33 45


Q ss_pred             cccchhhhccCCcccEEeecCCCCCh
Q 039126          220 SGLSIIFTKISRNTQSFDFINCFKLH  245 (295)
Q Consensus       220 ~~~~~~~~~~~~~L~~L~l~~c~~l~  245 (295)
                      |..     ..+++|+.+++.+++.+.
T Consensus       285 P~~-----~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         285 PQG-----GNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             CCS-----TTGGGSCGGGTCSSSEEE
T ss_pred             CCc-----ccCCCCCHHHhCCCcccc
Confidence            431     345666666666655443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.86  E-value=1.1e-21  Score=167.26  Aligned_cols=196  Identities=16%  Similarity=0.123  Sum_probs=151.4

Q ss_pred             CCCcEEecCCCCCCC--cCC-CCCCCCCCcEeeccccc-cccccccchhcccCCcEEccccCcCCceeCCcc-cCccccE
Q 039126           39 VNLKSINLNHSEHLT--EIP-SLSLATNLESLNFQRYT-SLLETHSSIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKK  113 (295)
Q Consensus        39 ~~L~~L~L~~~~~~~--~~~-~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~  113 (295)
                      .+++.|+|+++.+.+  .+| .+.++++|++|++++|+ ..+.+|..+.++++|++|++++|......+..+ .+..|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            479999999998876  466 69999999999999854 445899999999999999999965444444433 3889999


Q ss_pred             EeccCCCCCcccCcCCC---CCceEEccCcccc-ccchhhhCCCCC-cEEecCCCcC-----------------------
Q 039126          114 LILSGCSNLMSFPELFY---NIKELSLDGTAIN-ELPSSIEYLSKL-VILNLGNSSR-----------------------  165 (295)
Q Consensus       114 L~l~~~~~~~~~~~~~~---~L~~L~l~~~~i~-~~~~~~~~~~~L-~~L~l~~~~~-----------------------  165 (295)
                      +++++|.....+|..+.   .++.+++++|.+. .+|..++.+..+ +.+++++|..                       
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~  209 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML  209 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEE
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999988878887665   5679999999987 778877777654 6677666532                       


Q ss_pred             CcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCC
Q 039126          166 LEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINC  241 (295)
Q Consensus       166 ~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c  241 (295)
                      ...+|..+..++.++.+++++|.+.+.++ .+...  ++|++|+++++.....+|..+    ..+++|++|+++++
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~--~~L~~L~Ls~N~l~g~iP~~l----~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLS--KNLNGLDLRNNRIYGTLPQGL----TQLKFLHSLNVSFN  278 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCC--TTCCEEECCSSCCEECCCGGG----GGCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccccccc-ccccc--cccccccCccCeecccCChHH----hCCCCCCEEECcCC
Confidence            23345556778889999999887766554 45555  899999999875433677654    67899999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=4.6e-19  Score=150.16  Aligned_cols=232  Identities=15%  Similarity=0.188  Sum_probs=167.9

Q ss_pred             CCCCCCCcCCCCCCCCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccc
Q 039126            1 WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLET   78 (295)
Q Consensus         1 ~~~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~   78 (295)
                      |.+..++++|.-+ .+++++|+|++|+++++++ .+.++++|++|++++|.+....| .|..+++|++|++++| .++.+
T Consensus        17 C~~~~L~~lP~~l-~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n-~l~~l   94 (305)
T d1xkua_          17 CSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKEL   94 (305)
T ss_dssp             CTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBC
T ss_pred             ecCCCCCccCCCC-CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC-ccCcC
Confidence            4566788898744 5789999999999999986 68999999999999999876666 5999999999999996 45556


Q ss_pred             ccchhcccCCcEEccccCcCCceeC---------------------------Ccc-cCccccEEeccCCCCCcccCc-CC
Q 039126           79 HSSIRHLNKFVARNLKHCRSLTNLS---------------------------TSI-HLESLKKLILSGCSNLMSFPE-LF  129 (295)
Q Consensus        79 ~~~~~~l~~L~~L~l~~~~~l~~l~---------------------------~~~-~~~~L~~L~l~~~~~~~~~~~-~~  129 (295)
                      |..+  ...++.|++.++. +..++                           ..+ .+++|+.+++++|... .+|. ..
T Consensus        95 ~~~~--~~~l~~L~~~~n~-l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~~  170 (305)
T d1xkua_          95 PEKM--PKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP  170 (305)
T ss_dssp             CSSC--CTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC
T ss_pred             ccch--hhhhhhhhccccc-hhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCcccC
Confidence            5432  2345555544421 11111                           011 2567888888887643 4443 45


Q ss_pred             CCCceEEccCcccc-ccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCccee
Q 039126          130 YNIKELSLDGTAIN-ELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDI  208 (295)
Q Consensus       130 ~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L  208 (295)
                      .++++|++++|... ..+..+..++.++.|++++|......+..+.++++|++|++++|.+ ..+|..+..+  ++|++|
T Consensus       171 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L-~~lp~~l~~l--~~L~~L  247 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADH--KYIQVV  247 (305)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC-SSCCTTTTTC--SSCCEE
T ss_pred             CccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccc-cccccccccc--cCCCEE
Confidence            57888999888777 4456677888899999988854444466778889999999999865 4677788877  899999


Q ss_pred             ecccccccccccccchh---hhccCCcccEEeecCCC
Q 039126          209 EAHWCSSLETLSGLSII---FTKISRNTQSFDFINCF  242 (295)
Q Consensus       209 ~l~~~~~l~~~~~~~~~---~~~~~~~L~~L~l~~c~  242 (295)
                      +++++ +++.++...+.   .....++|+.|++.+++
T Consensus       248 ~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         248 YLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             ECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            99985 57777643221   12356788899998876

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.2e-19  Score=148.36  Aligned_cols=206  Identities=18%  Similarity=0.162  Sum_probs=138.3

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccc-
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETH-   79 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-   79 (295)
                      +..++++|... .+++++|+|++|+++++|. .+.+++.|++|++++|.+....+ .+..+..++.++...++.+..++ 
T Consensus        20 ~~~L~~iP~~i-p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~   98 (284)
T d1ozna_          20 QQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP   98 (284)
T ss_dssp             SSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred             CCCCCccCCCC-CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34466666532 3567888888888887774 56788888888888887655444 46677778887776666666664 


Q ss_pred             cchhcccCCcEEccccCcCCceeCCc-c-cCccccEEeccCCCCCcccC-cC---CCCCceEEccCccccccc-hhhhCC
Q 039126           80 SSIRHLNKFVARNLKHCRSLTNLSTS-I-HLESLKKLILSGCSNLMSFP-EL---FYNIKELSLDGTAINELP-SSIEYL  152 (295)
Q Consensus        80 ~~~~~l~~L~~L~l~~~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~~~~-~~---~~~L~~L~l~~~~i~~~~-~~~~~~  152 (295)
                      ..+..+++|++|++++|.. ..++.. . ...+|+.+++++|++. .+| ..   ..+|++|++++|.++.++ ..+..+
T Consensus        99 ~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l  176 (284)
T d1ozna_          99 ATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL  176 (284)
T ss_dssp             TTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             hhhcccccCCEEecCCccc-ccccccccchhcccchhhhcccccc-ccChhHhccccchhhcccccCcccccchhhhccc
Confidence            4477788888888887543 333322 2 2677788888877543 343 22   235667777777777654 345667


Q ss_pred             CCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccc
Q 039126          153 SKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWC  213 (295)
Q Consensus       153 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~  213 (295)
                      ++|+++++++|......|..+.++++|++|++++|.+.+..+..+..+  ++|++|+++++
T Consensus       177 ~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~--~~L~~L~l~~N  235 (284)
T d1ozna_         177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL--RALQYLRLNDN  235 (284)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC--TTCCEEECCSS
T ss_pred             cccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccc--cccCEEEecCC
Confidence            777777777775555556677777777777777777766666666666  77777777764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=9e-19  Score=145.56  Aligned_cols=184  Identities=20%  Similarity=0.207  Sum_probs=134.2

Q ss_pred             CCCCCCcCCCCCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeecccccccccccc
Q 039126            2 HGCPFKSLSSIIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHS   80 (295)
Q Consensus         2 ~~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (295)
                      .+..++++|..+ .+++++|+|++|.++.++ ..+.++++|++|++++|.+ ..++.+..+++|++|++++| .+...+.
T Consensus        18 ~~~~L~~iP~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l-~~l~~~~~l~~L~~L~Ls~N-~l~~~~~   94 (266)
T d1p9ag_          18 DKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTLDLSHN-QLQSLPL   94 (266)
T ss_dssp             TTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECCSCCTTCCEEECCSS-CCSSCCC
T ss_pred             cCCCCCeeCcCc-CcCCCEEECcCCcCCCcCHHHhhccccccccccccccc-cccccccccccccccccccc-ccccccc
Confidence            345667777543 367888999998888887 4578888899999988875 45666778888999999885 4566666


Q ss_pred             chhcccCCcEEccccCcCCceeCCcc-cCccccEEeccCCCCCcccCc----CCCCCceEEccCccccccch-hhhCCCC
Q 039126           81 SIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPE----LFYNIKELSLDGTAINELPS-SIEYLSK  154 (295)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~i~~~~~-~~~~~~~  154 (295)
                      .+..+++|+.|+++++...+..+... .+.+++.|++.+|.+. .++.    .+.+++.+++++|.++.++. .+..+++
T Consensus        95 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~  173 (266)
T d1p9ag_          95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN  173 (266)
T ss_dssp             CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred             ccccccccccccccccccceeeccccccccccccccccccccc-eeccccccccccchhcccccccccccCccccccccc
Confidence            77888888888888854333222222 3778888888887543 4433    23467788888888886654 4677888


Q ss_pred             CcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCC
Q 039126          155 LVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNL  190 (295)
Q Consensus       155 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~  190 (295)
                      |++|++++|. ++.+|+.+..+++|+.|++++|+..
T Consensus       174 L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         174 LDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cceeecccCC-CcccChhHCCCCCCCEEEecCCCCC
Confidence            8888888874 6678877888888888888887654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5e-18  Score=142.29  Aligned_cols=216  Identities=18%  Similarity=0.139  Sum_probs=169.7

Q ss_pred             eeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccccCc
Q 039126           19 VSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCR   97 (295)
Q Consensus        19 ~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~   97 (295)
                      ..++.+++.++.+|..+.  +.+++|+|++|.+....+ .|..+++|++|+++++......+..+..+..++.+.+..+.
T Consensus        14 ~~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             CEEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            345777788888887664  568999999999754444 49999999999999965444444557788999999887777


Q ss_pred             CCceeCCcc--cCccccEEeccCCCCCcccCc---CCCCCceEEccCccccccch-hhhCCCCCcEEecCCCcCCcCccc
Q 039126           98 SLTNLSTSI--HLESLKKLILSGCSNLMSFPE---LFYNIKELSLDGTAINELPS-SIEYLSKLVILNLGNSSRLEGLPS  171 (295)
Q Consensus        98 ~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~~~~~~p~  171 (295)
                      .++.++...  .+++|+.|++++|......+.   ...+|+.+++.+|.++.++. .+..+++|+.|++++|......+.
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence            787776554  489999999999875432222   34478899999999998864 577889999999999854333456


Q ss_pred             ccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126          172 KICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF  242 (295)
Q Consensus       172 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~  242 (295)
                      ++.++++|+.+++++|.+.+..|..+..+  ++|++|+++++. ++.++...   .+.+++|++|++++.+
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l--~~L~~L~l~~N~-i~~~~~~~---~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDL--GRLMTLYLFANN-LSALPTEA---LAPLRALQYLRLNDNP  236 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTC--TTCCEEECCSSC-CSCCCHHH---HTTCTTCCEEECCSSC
T ss_pred             hhccccccchhhhhhccccccChhHhhhh--hhcccccccccc-cccccccc---cccccccCEEEecCCC
Confidence            78899999999999999888888999888  999999999865 56655422   2688999999999864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.4e-18  Score=141.33  Aligned_cols=191  Identities=20%  Similarity=0.106  Sum_probs=125.3

Q ss_pred             CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEcc
Q 039126           15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNL   93 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   93 (295)
                      ...+..+|.++++++.+|..+.  +.+++|+|++|.+.+..+ .|..+++|++|++++| .++.++. +..+++|++|++
T Consensus         9 ~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~-~~~l~~L~~L~L   84 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLDL   84 (266)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEEC
T ss_pred             cCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc-cccccccccccc
Confidence            4455667888888988887654  578999999998654433 4888999999999886 5566653 467888888888


Q ss_pred             ccCcCCceeCCcc-cCccccEEeccCCCCCcccCc---CCCCCceEEccCccccccchh-hhCCCCCcEEecCCCcCCcC
Q 039126           94 KHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPE---LFYNIKELSLDGTAINELPSS-IEYLSKLVILNLGNSSRLEG  168 (295)
Q Consensus        94 ~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~~~~~~~~  168 (295)
                      ++|. ++..+..+ .+++|+.|+++++......+.   ...++++|++.+|.++.++.. +..+++++.+++++|.....
T Consensus        85 s~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          85 SHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             CSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             cccc-ccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            8854 44444433 477888888887754332222   233566777777777666543 34566677777777643333


Q ss_pred             cccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccc
Q 039126          169 LPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWC  213 (295)
Q Consensus       169 ~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~  213 (295)
                      .+..+..+++|++|++++|.+. .+|..+..+  ++|+.|+++++
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~--~~L~~L~L~~N  205 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGS--HLLPFAFLHGN  205 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT--CCCSEEECCSC
T ss_pred             CccccccccccceeecccCCCc-ccChhHCCC--CCCCEEEecCC
Confidence            3344666777777777776543 566666555  66666666653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=3.4e-17  Score=142.38  Aligned_cols=227  Identities=19%  Similarity=0.223  Sum_probs=136.8

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeecccccccc------
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLL------   76 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------   76 (295)
                      ++.++++..+..+++|++|++++|.+++++. ++++++|++|++++|.+. .++.+..+++|+.|+++++....      
T Consensus        53 ~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~-~i~~l~~l~~L~~L~~~~~~~~~~~~~~~  130 (384)
T d2omza2          53 RLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTLFNNQITDIDPLKN  130 (384)
T ss_dssp             SSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCCCCCGGGTT
T ss_pred             CCCCCCccccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccc-ccccccccccccccccccccccccccccc
Confidence            4556667666678888888888888888864 888888888888888754 45567888888888877642111      


Q ss_pred             ---------------------------------------------------------ccccchhcccCCcEEccccCcCC
Q 039126           77 ---------------------------------------------------------ETHSSIRHLNKFVARNLKHCRSL   99 (295)
Q Consensus        77 ---------------------------------------------------------~~~~~~~~l~~L~~L~l~~~~~l   99 (295)
                                                                               ........+++++.++++++ .+
T Consensus       131 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n-~i  209 (384)
T d2omza2         131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN-QI  209 (384)
T ss_dssp             CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CC
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCC-cc
Confidence                                                                     00012234455555555553 23


Q ss_pred             ceeCCcccCccccEEeccCCCCCcccC--cCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcc-------
Q 039126          100 TNLSTSIHLESLKKLILSGCSNLMSFP--ELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLP-------  170 (295)
Q Consensus       100 ~~l~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p-------  170 (295)
                      +.++....+++|+.|++++|.. ..++  ..+.+|+.|++++|.++.++. ++.+++|+.|+++++. +..++       
T Consensus       210 ~~~~~~~~~~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~-l~~~~~~~~~~~  286 (384)
T d2omza2         210 SDITPLGILTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ-ISNISPLAGLTA  286 (384)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CCCCGGGTTCTT
T ss_pred             CCCCcccccCCCCEEECCCCCC-CCcchhhcccccchhccccCccCCCCc-ccccccCCEeeccCcc-cCCCCccccccc
Confidence            3333333456677777776643 2232  234466667777766665543 4556666666666553 22211       


Q ss_pred             --------------cccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEE
Q 039126          171 --------------SKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSF  236 (295)
Q Consensus       171 --------------~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L  236 (295)
                                    ..+..++.++.|++++|.+.+ ++ .+..+  ++|++|++++| .++.++. +    ..+++|++|
T Consensus       287 l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~-l~-~l~~l--~~L~~L~L~~n-~l~~l~~-l----~~l~~L~~L  356 (384)
T d2omza2         287 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISD-IS-PVSSL--TKLQRLFFANN-KVSDVSS-L----ANLTNINWL  356 (384)
T ss_dssp             CSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC-CG-GGGGC--TTCCEEECCSS-CCCCCGG-G----GGCTTCCEE
T ss_pred             cccccccccccccccccchhcccCeEECCCCCCCC-Cc-ccccC--CCCCEEECCCC-CCCCChh-H----cCCCCCCEE
Confidence                          124455666777777765543 22 24555  77777777776 4566542 2    467777777


Q ss_pred             eecCCCCChh
Q 039126          237 DFINCFKLHQ  246 (295)
Q Consensus       237 ~l~~c~~l~~  246 (295)
                      ++++| ++++
T Consensus       357 ~l~~N-~l~~  365 (384)
T d2omza2         357 SAGHN-QISD  365 (384)
T ss_dssp             ECCSS-CCCB
T ss_pred             ECCCC-cCCC
Confidence            77766 3444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=3.6e-17  Score=138.28  Aligned_cols=217  Identities=15%  Similarity=0.082  Sum_probs=167.7

Q ss_pred             CceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEcccc
Q 039126           17 NLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKH   95 (295)
Q Consensus        17 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   95 (295)
                      ..+.+|-++.+++++|..+.  +.+++|++++|.+..-.+ .|..+++|++|++++|......|..+..+++|++|++++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            45678888888999997664  689999999998654444 589999999999999776655567799999999999999


Q ss_pred             CcCCceeCCcccCccccEEeccCCCCCc--------------------------cc---CcCCCCCceEEccCccccccc
Q 039126           96 CRSLTNLSTSIHLESLKKLILSGCSNLM--------------------------SF---PELFYNIKELSLDGTAINELP  146 (295)
Q Consensus        96 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~--------------------------~~---~~~~~~L~~L~l~~~~i~~~~  146 (295)
                      | .++.+|... ...++.|.+..|....                          ..   ...+.+|+++++++|.+..++
T Consensus        89 n-~l~~l~~~~-~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~  166 (305)
T d1xkua_          89 N-QLKELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP  166 (305)
T ss_dssp             S-CCSBCCSSC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred             C-ccCcCccch-hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC
Confidence            5 566666543 3455666655543221                          00   112236778899999888887


Q ss_pred             hhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhh
Q 039126          147 SSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIF  226 (295)
Q Consensus       147 ~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  226 (295)
                      ..  .+++|+.|++++|......+..+.+++.+++|++++|.+.+..+..+..+  ++|++|+++++ +++.++..+   
T Consensus       167 ~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l--~~L~~L~L~~N-~L~~lp~~l---  238 (305)
T d1xkua_         167 QG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT--PHLRELHLNNN-KLVKVPGGL---  238 (305)
T ss_dssp             SS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS--TTCCEEECCSS-CCSSCCTTT---
T ss_pred             cc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccc--ccceeeecccc-ccccccccc---
Confidence            54  46899999999987777777889999999999999998877777777877  99999999997 578887644   


Q ss_pred             hccCCcccEEeecCCCCChhh
Q 039126          227 TKISRNTQSFDFINCFKLHQN  247 (295)
Q Consensus       227 ~~~~~~L~~L~l~~c~~l~~~  247 (295)
                       ..+++|++|+++++ +++.+
T Consensus       239 -~~l~~L~~L~Ls~N-~i~~i  257 (305)
T d1xkua_         239 -ADHKYIQVVYLHNN-NISAI  257 (305)
T ss_dssp             -TTCSSCCEEECCSS-CCCCC
T ss_pred             -ccccCCCEEECCCC-ccCcc
Confidence             57899999999997 46654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=5.4e-17  Score=131.41  Aligned_cols=207  Identities=18%  Similarity=0.225  Sum_probs=137.9

Q ss_pred             CCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEcccc
Q 039126           16 KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKH   95 (295)
Q Consensus        16 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   95 (295)
                      .++..+++..+.+.++. ....+.+|+.|++.+|.+. +++++..+++|++|++++|. +..++ .+..+++++++++++
T Consensus        19 ~~~~~~~l~~~~~~d~~-~~~~l~~L~~L~l~~~~i~-~l~~l~~l~~L~~L~ls~n~-i~~~~-~l~~l~~l~~l~~~~   94 (227)
T d1h6ua2          19 ANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQ-ITDLA-PLKNLTKITELELSG   94 (227)
T ss_dssp             HHHHHHHTTCSSTTSEE-CHHHHHTCCEEECTTSCCC-CCTTGGGCTTCCEEECCSSC-CCCCG-GGTTCCSCCEEECCS
T ss_pred             HHHHHHHhCCCCcCCcC-CHHHcCCcCEEECCCCCCC-cchhHhcCCCCcEeecCCce-eeccc-ccccccccccccccc
Confidence            33445566666665543 3456677777777777643 45667777777788777753 33333 367777777777776


Q ss_pred             CcCCceeCCcccCccccEEeccCCCCCcccC-cCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccC
Q 039126           96 CRSLTNLSTSIHLESLKKLILSGCSNLMSFP-ELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKIC  174 (295)
Q Consensus        96 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~  174 (295)
                      | .++.++....+++|+.+.++++......+ .....++.+.+.++.+..... +..+++|+.|++++|. +...+ .++
T Consensus        95 n-~~~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~-~~~~~-~l~  170 (227)
T d1h6ua2          95 N-PLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLT-PLA  170 (227)
T ss_dssp             C-CCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCG-GGT
T ss_pred             c-cccccccccccccccccccccccccccchhccccchhhhhchhhhhchhhh-hccccccccccccccc-cccch-hhc
Confidence            4 34455544457778888887765433222 233456677777777665433 5577889999998874 34343 378


Q ss_pred             CCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecC
Q 039126          175 KLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFIN  240 (295)
Q Consensus       175 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~  240 (295)
                      ++++|++|++++|.+. .++. +..+  ++|++|++++| .++.++.     .+.+++|++|++++
T Consensus       171 ~l~~L~~L~Ls~n~l~-~l~~-l~~l--~~L~~L~Ls~N-~lt~i~~-----l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         171 NLSKLTTLKADDNKIS-DISP-LASL--PNLIEVHLKNN-QISDVSP-----LANTSNLFIVTLTN  226 (227)
T ss_dssp             TCTTCCEEECCSSCCC-CCGG-GGGC--TTCCEEECTTS-CCCBCGG-----GTTCTTCCEEEEEE
T ss_pred             ccccceecccCCCccC-CChh-hcCC--CCCCEEECcCC-cCCCCcc-----cccCCCCCEEEeeC
Confidence            8999999999998654 4443 6666  89999999987 5787764     26788999998864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=5.6e-16  Score=134.49  Aligned_cols=222  Identities=18%  Similarity=0.203  Sum_probs=143.7

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcC---------------------------
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEI---------------------------   55 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~---------------------------   55 (295)
                      +..++++|.+..+++|++|++++|.+.+++. ++.+++|+.|++.++.+.+..                           
T Consensus        75 ~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  153 (384)
T d2omza2          75 NNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGL  153 (384)
T ss_dssp             SSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTC
T ss_pred             CCcCCCCccccCCcccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4567788877789999999999999988764 789999999999877543210                           


Q ss_pred             -------------------------------------CCCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcC
Q 039126           56 -------------------------------------PSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRS   98 (295)
Q Consensus        56 -------------------------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   98 (295)
                                                           .....+++++.+++++|. +..++ ....+++|+.|++++| .
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~-i~~~~-~~~~~~~L~~L~l~~n-~  230 (384)
T d2omza2         154 TSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ-ISDIT-PLGILTNLDELSLNGN-Q  230 (384)
T ss_dssp             TTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCG-GGGGCTTCCEEECCSS-C
T ss_pred             ccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCc-cCCCC-cccccCCCCEEECCCC-C
Confidence                                                 012234556666666543 22222 1344555666666553 3


Q ss_pred             CceeCCcccCccccEEeccCCCCCcccC-cCCCCCc----------------------eEEccCccccccchhhhCCCCC
Q 039126           99 LTNLSTSIHLESLKKLILSGCSNLMSFP-ELFYNIK----------------------ELSLDGTAINELPSSIEYLSKL  155 (295)
Q Consensus        99 l~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~L~----------------------~L~l~~~~i~~~~~~~~~~~~L  155 (295)
                      ++.++....+++|+.+++++|...+-.+ ....+|+                      .+.+..+.++.++ .+..++++
T Consensus       231 l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l  309 (384)
T d2omza2         231 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS-PISNLKNL  309 (384)
T ss_dssp             CCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG-GGGGCTTC
T ss_pred             CCCcchhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCcccccccccccccccccccccc-ccchhccc
Confidence            3333332234555555555544222111 1122344                      4444444444433 35677899


Q ss_pred             cEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccE
Q 039126          156 VILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQS  235 (295)
Q Consensus       156 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~  235 (295)
                      +.|++++| .+..++. +..+++|++|++++|.+. .++ .+..+  ++|++|+++++ .++.++. .    ..+++|+.
T Consensus       310 ~~L~ls~n-~l~~l~~-l~~l~~L~~L~L~~n~l~-~l~-~l~~l--~~L~~L~l~~N-~l~~l~~-l----~~l~~L~~  377 (384)
T d2omza2         310 TYLTLYFN-NISDISP-VSSLTKLQRLFFANNKVS-DVS-SLANL--TNINWLSAGHN-QISDLTP-L----ANLTRITQ  377 (384)
T ss_dssp             SEEECCSS-CCSCCGG-GGGCTTCCEEECCSSCCC-CCG-GGGGC--TTCCEEECCSS-CCCBCGG-G----TTCTTCSE
T ss_pred             CeEECCCC-CCCCCcc-cccCCCCCEEECCCCCCC-CCh-hHcCC--CCCCEEECCCC-cCCCChh-h----ccCCCCCE
Confidence            99999988 4555653 788999999999999754 454 57777  99999999986 5777654 2    68899999


Q ss_pred             EeecCC
Q 039126          236 FDFINC  241 (295)
Q Consensus       236 L~l~~c  241 (295)
                      |++++.
T Consensus       378 L~L~~N  383 (384)
T d2omza2         378 LGLNDQ  383 (384)
T ss_dssp             EECCCE
T ss_pred             eeCCCC
Confidence            999863

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6.1e-17  Score=132.23  Aligned_cols=188  Identities=19%  Similarity=0.271  Sum_probs=124.5

Q ss_pred             CCCCcCCCCCCCCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeeccccccccccc-
Q 039126            4 CPFKSLSSIIRPKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETH-   79 (295)
Q Consensus         4 ~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~-   79 (295)
                      ..++++|... .+++++|++++|+++.++. .+.++++|++|++++|.+...++  .+..+++++++.+..++.+...+ 
T Consensus        18 ~~l~~iP~~l-~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~   96 (242)
T d1xwdc1          18 SKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP   96 (242)
T ss_dssp             CSCSSCCSCS-CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECT
T ss_pred             CCCCCcCCCC-CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccc
Confidence            4567777533 3578899999998888875 46888999999999988766555  47788888888887766665555 


Q ss_pred             cchhcccCCcEEccccCcCCceeCCcccCccccE---EeccCCCCCcccCc-CC----CCCceEEccCccccccchhhhC
Q 039126           80 SSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKK---LILSGCSNLMSFPE-LF----YNIKELSLDGTAINELPSSIEY  151 (295)
Q Consensus        80 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~---L~l~~~~~~~~~~~-~~----~~L~~L~l~~~~i~~~~~~~~~  151 (295)
                      ..+..+++|+.+++.++ .+...+....+.+++.   +...++ ....++. .+    ..++.+++.+|.++.++..+..
T Consensus        97 ~~~~~l~~L~~l~l~~~-~l~~~~~~~~~~~l~~l~~~~~~n~-~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~  174 (242)
T d1xwdc1          97 EAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN  174 (242)
T ss_dssp             TSEECCTTCCEEEEESC-CCCSCCCCTTTCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTT
T ss_pred             ccccccccccccccchh-hhccccccccccccccccccccccc-ccccccccccccccccceeeeccccccccccccccc
Confidence            44788888999988885 4455544333333333   333333 2333332 22    2455778888888877766666


Q ss_pred             CCCCcEEecCCCcCCcCccc-ccCCCCCCCeeeccCCCCCCCchh
Q 039126          152 LSKLVILNLGNSSRLEGLPS-KICKLKSLQHLNLSCCSNLESFPN  195 (295)
Q Consensus       152 ~~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~~~~~  195 (295)
                      .+++..+....+..++.+|. .+.++++|++|++++|.+. .+|.
T Consensus       175 ~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~  218 (242)
T d1xwdc1         175 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS  218 (242)
T ss_dssp             TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCS
T ss_pred             chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCH
Confidence            66666665444446666664 3677888888888887654 3433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.8e-17  Score=133.14  Aligned_cols=188  Identities=18%  Similarity=0.249  Sum_probs=149.1

Q ss_pred             CCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEc
Q 039126           13 IRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARN   92 (295)
Q Consensus        13 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   92 (295)
                      ..+.+|+.|++.+|.++++ .+++++++|++|++++|.+. .++.+..+++++++++++| ..+.++ .+..+++|+.++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~-~~~~l~~l~~l~~l~~~~n-~~~~i~-~l~~l~~L~~l~  113 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQIT-DLAPLKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLD  113 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCC-CCGGGTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEE
T ss_pred             HHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceee-ccccccccccccccccccc-cccccc-cccccccccccc
Confidence            3578999999999999998 46899999999999999864 4456899999999999986 445554 577899999999


Q ss_pred             cccCcCCceeCCcccCccccEEeccCCCCCcccC-cCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCccc
Q 039126           93 LKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFP-ELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPS  171 (295)
Q Consensus        93 l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~  171 (295)
                      ++++. ....+.....+.++.+.++++......+ ....+|++|++++|.+...+. ++.+++|+.|++++| .+..++.
T Consensus       114 l~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n-~l~~l~~  190 (227)
T d1h6ua2         114 LTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDN-KISDISP  190 (227)
T ss_dssp             CTTSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG
T ss_pred             ccccc-ccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchh-hcccccceecccCCC-ccCCChh
Confidence            99864 3344444457888999998876543322 345579999999999886654 788999999999998 5677764


Q ss_pred             ccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccc
Q 039126          172 KICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHW  212 (295)
Q Consensus       172 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~  212 (295)
                       +.++++|++|++++|.+. .++ .+..+  ++|++|++++
T Consensus       191 -l~~l~~L~~L~Ls~N~lt-~i~-~l~~l--~~L~~L~lsn  226 (227)
T d1h6ua2         191 -LASLPNLIEVHLKNNQIS-DVS-PLANT--SNLFIVTLTN  226 (227)
T ss_dssp             -GGGCTTCCEEECTTSCCC-BCG-GGTTC--TTCCEEEEEE
T ss_pred             -hcCCCCCCEEECcCCcCC-CCc-ccccC--CCCCEEEeeC
Confidence             889999999999999754 455 36676  9999999864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.7e-16  Score=126.89  Aligned_cols=179  Identities=20%  Similarity=0.242  Sum_probs=110.1

Q ss_pred             EecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCc
Q 039126           21 PEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLT  100 (295)
Q Consensus        21 L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  100 (295)
                      .++..+.+.+... ...+..|++|++++|.+ ..++.+..+++|++|++++| .++.++ .+..+++|++|++++| .++
T Consensus        29 ~~l~~~~~~~~~~-~~~L~~L~~L~l~~~~i-~~l~~l~~l~~L~~L~L~~n-~i~~l~-~~~~l~~L~~L~l~~n-~i~  103 (210)
T d1h6ta2          29 DNLKKKSVTDAVT-QNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGN-KLTDIK-PLANLKNLGWLFLDEN-KVK  103 (210)
T ss_dssp             HHTTCSCTTSEEC-HHHHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCC
T ss_pred             HHhCcCccCCccC-HHHhcCccEEECcCCCC-CCchhHhhCCCCCEEeCCCc-cccCcc-ccccCccccccccccc-ccc
Confidence            3444444443221 12455667777777654 34445666777777777764 344444 3556777777777764 455


Q ss_pred             eeCCcccCccccEEeccCCCCCcccC--cCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCC
Q 039126          101 NLSTSIHLESLKKLILSGCSNLMSFP--ELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKS  178 (295)
Q Consensus       101 ~l~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~  178 (295)
                      .++....+++|+.|++++|... .++  ....+++.+++++|.++..+ .+..+++|+.+++++|. +..++. +.++++
T Consensus       104 ~l~~l~~l~~L~~L~l~~~~~~-~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~-l~~i~~-l~~l~~  179 (210)
T d1h6ta2         104 DLSSLKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTK  179 (210)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCC-CCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTT
T ss_pred             cccccccccccccccccccccc-ccccccccccccccccccccccccc-ccccccccccccccccc-cccccc-ccCCCC
Confidence            5554445677777777776432 222  12345667777777776544 35667788888888874 455543 778888


Q ss_pred             CCeeeccCCCCCCCchhhhhccCCCCcceeeccc
Q 039126          179 LQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHW  212 (295)
Q Consensus       179 L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~  212 (295)
                      |++|++++|.+ +.++ .+..+  ++|++|++++
T Consensus       180 L~~L~Ls~N~i-~~l~-~l~~l--~~L~~L~Ls~  209 (210)
T d1h6ta2         180 LQNLYLSKNHI-SDLR-ALAGL--KNLDVLELFS  209 (210)
T ss_dssp             CCEEECCSSCC-CBCG-GGTTC--TTCSEEEEEE
T ss_pred             CCEEECCCCCC-CCCh-hhcCC--CCCCEEEccC
Confidence            88888888765 3454 46666  7888888764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3e-17  Score=137.53  Aligned_cols=61  Identities=28%  Similarity=0.293  Sum_probs=25.8

Q ss_pred             CCCCCcEEecCCCcCCc-CcccccCCCCCCCeeeccCCC-CCCCchhhhhccCCCCcceeecccc
Q 039126          151 YLSKLVILNLGNSSRLE-GLPSKICKLKSLQHLNLSCCS-NLESFPNELRNLFPCDLYDIEAHWC  213 (295)
Q Consensus       151 ~~~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~~~L~~L~l~~~  213 (295)
                      ++++|++|++++|..++ .....+.++++|++|++++|. +.+.....+..+  ++|++|++++|
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~--~~L~~L~l~~~  235 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI--PTLKTLQVFGI  235 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC--TTCCEEECTTS
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcC--CCCCEEeeeCC
Confidence            34445555554443332 222334444445555554442 222233333333  44555544444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.7e-17  Score=134.96  Aligned_cols=203  Identities=18%  Similarity=0.220  Sum_probs=148.0

Q ss_pred             CCCCCCceeEecCCCCccc--cchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccc--cccchhccc
Q 039126           12 IIRPKNLVSPEIPRNSIKQ--LWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLE--THSSIRHLN   86 (295)
Q Consensus        12 ~~~~~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~   86 (295)
                      .+...+|++||++++.+..  +...+.+|++|++|++.+|.+....+ .+..+++|++|++++|..++.  +......++
T Consensus        42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence            3457789999999998763  55667899999999999998655554 578899999999999987764  333356889


Q ss_pred             CCcEEccccCcCCceeCC--cc--cCccccEEeccCCCC-Cc-----ccCcCCCCCceEEccCc-ccc-ccchhhhCCCC
Q 039126           87 KFVARNLKHCRSLTNLST--SI--HLESLKKLILSGCSN-LM-----SFPELFYNIKELSLDGT-AIN-ELPSSIEYLSK  154 (295)
Q Consensus        87 ~L~~L~l~~~~~l~~l~~--~~--~~~~L~~L~l~~~~~-~~-----~~~~~~~~L~~L~l~~~-~i~-~~~~~~~~~~~  154 (295)
                      +|++|++++|..+++...  ..  .+++|+.|+++++.. ..     .+....++|++|++++| .++ .....+..+++
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~  201 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY  201 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             hccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCc
Confidence            999999999877664321  11  267899999998632 21     23345678999999997 466 55667888999


Q ss_pred             CcEEecCCCcCCcC-cccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccccccccc
Q 039126          155 LVILNLGNSSRLEG-LPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLS  220 (295)
Q Consensus       155 L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~  220 (295)
                      |++|++++|..+.. ....++++++|++|++++|-..+.+......+  ++|+   + +|..++.+.
T Consensus       202 L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~l--p~L~---i-~~~~ls~~~  262 (284)
T d2astb2         202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEAL--PHLQ---I-NCSHFTTIA  262 (284)
T ss_dssp             CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHS--TTSE---E-SCCCSCCTT
T ss_pred             CCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhC--cccc---c-cCccCCCCC
Confidence            99999999876653 34568889999999999983333333333344  5554   3 355566553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=7.7e-16  Score=121.99  Aligned_cols=178  Identities=17%  Similarity=0.279  Sum_probs=108.4

Q ss_pred             eeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcC
Q 039126           19 VSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRS   98 (295)
Q Consensus        19 ~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   98 (295)
                      ....++.+.+++.+. ...+.++++|++++|.+ .+++++..+++|++|++++| .++.++ .+..+++|++|++++| .
T Consensus        21 i~~~l~~~~~~~~~~-~~~l~~l~~L~l~~~~i-~~l~~l~~l~nL~~L~Ls~N-~l~~~~-~l~~l~~L~~L~l~~n-~   95 (199)
T d2omxa2          21 MKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGI-KSIDGVEYLNNLTQINFSNN-QLTDIT-PLKNLTKLVDILMNNN-Q   95 (199)
T ss_dssp             HHHHTTCSSTTSEEC-HHHHTTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-C
T ss_pred             HHHHhCCCCCCCccC-HHHhcCCCEEECCCCCC-CCccccccCCCcCcCccccc-cccCcc-cccCCccccccccccc-c
Confidence            344555555554321 23456666777776654 34455666677777777664 344444 2666677777777664 3


Q ss_pred             CceeCCcccCccccEEeccCCCCCccc-CcCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCC
Q 039126           99 LTNLSTSIHLESLKKLILSGCSNLMSF-PELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLK  177 (295)
Q Consensus        99 l~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~  177 (295)
                      +..++....++.|+.|++++|...... ...+.+|+.|++++|.+..++ .+..+++|+.|++.+| .+..++ .+++++
T Consensus        96 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n-~l~~l~-~l~~l~  172 (199)
T d2omxa2          96 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSN-QVTDLK-PLANLT  172 (199)
T ss_dssp             CCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSS-CCCCCG-GGTTCT
T ss_pred             cccccccccccccccccccccccccccccchhhhhHHhhhhhhhhcccc-cccccccccccccccc-cccCCc-cccCCC
Confidence            344443334667777777766543221 123456777777777777665 4667788888888887 455555 377888


Q ss_pred             CCCeeeccCCCCCCCchhhhhccCCCCccee
Q 039126          178 SLQHLNLSCCSNLESFPNELRNLFPCDLYDI  208 (295)
Q Consensus       178 ~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L  208 (295)
                      +|++|++++|.+. +++ .+..+  ++|+.|
T Consensus       173 ~L~~L~ls~N~i~-~i~-~l~~L--~~L~~L  199 (199)
T d2omxa2         173 TLERLDISSNKVS-DIS-VLAKL--TNLESL  199 (199)
T ss_dssp             TCCEEECCSSCCC-CCG-GGGGC--TTCSEE
T ss_pred             CCCEEECCCCCCC-CCc-cccCC--CCCCcC
Confidence            8888888887643 443 45555  666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=3.8e-16  Score=123.77  Aligned_cols=159  Identities=19%  Similarity=0.304  Sum_probs=82.1

Q ss_pred             CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccc
Q 039126           15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLK   94 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   94 (295)
                      +++++.|+++++.+..+. +++.+++|++|++++|.+. .++.+..+++|++|++++|. ...++ .+..++.|+.++++
T Consensus        39 l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~-~~~~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLT-DITPLKNLTKLVDILMNNNQ-IADIT-PLANLTNLTGLTLF  114 (199)
T ss_dssp             HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEECC
T ss_pred             hcCCCEEECCCCCCCCcc-ccccCCCcCcCcccccccc-CcccccCCcccccccccccc-ccccc-cccccccccccccc
Confidence            455666666666555542 3555666666666666543 23345566666666666542 23333 24555666666665


Q ss_pred             cCcCCceeCCcccCccccEEeccCCCCCcccC--cCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccc
Q 039126           95 HCRSLTNLSTSIHLESLKKLILSGCSNLMSFP--ELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSK  172 (295)
Q Consensus        95 ~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~  172 (295)
                      ++.. ...+....+++|+.|++++|+. ..++  ....+++.|++.+|.++.++. ++.+++|++|++++| .++.++ .
T Consensus       115 ~~~~-~~~~~~~~l~~L~~L~l~~n~l-~~~~~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N-~i~~i~-~  189 (199)
T d2omxa2         115 NNQI-TDIDPLKNLTNLNRLELSSNTI-SDISALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSN-KVSDIS-V  189 (199)
T ss_dssp             SSCC-CCCGGGTTCTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-G
T ss_pred             cccc-ccccccchhhhhHHhhhhhhhh-cccccccccccccccccccccccCCcc-ccCCCCCCEEECCCC-CCCCCc-c
Confidence            5332 2222222355666666665542 2222  123355566666666555542 455566666666665 344443 2


Q ss_pred             cCCCCCCCee
Q 039126          173 ICKLKSLQHL  182 (295)
Q Consensus       173 l~~l~~L~~L  182 (295)
                      ++++++|++|
T Consensus       190 l~~L~~L~~L  199 (199)
T d2omxa2         190 LAKLTNLESL  199 (199)
T ss_dssp             GGGCTTCSEE
T ss_pred             ccCCCCCCcC
Confidence            5555555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=8.3e-15  Score=116.91  Aligned_cols=165  Identities=22%  Similarity=0.286  Sum_probs=135.7

Q ss_pred             CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEcc
Q 039126           14 RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNL   93 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   93 (295)
                      .+.+++.|++++|.++.++ +++.+++|++|++++|.+. .++.+..+++|++|++++| .++.++ .+..+++|+.|++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~-~l~~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEEC
T ss_pred             HhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCcccc-CccccccCccccccccccc-cccccc-ccccccccccccc
Confidence            3678999999999998875 5889999999999999864 4666889999999999996 566666 5788999999999


Q ss_pred             ccCcCCceeCCcccCccccEEeccCCCCCcc-cCcCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccc
Q 039126           94 KHCRSLTNLSTSIHLESLKKLILSGCSNLMS-FPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSK  172 (295)
Q Consensus        94 ~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~  172 (295)
                      ++|. ...++....++.++.+++++|..... ....+.+|+++++++|.++.++. +..+++|+.|++++| .++.+| .
T Consensus       120 ~~~~-~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N-~i~~l~-~  195 (210)
T d1h6ta2         120 EHNG-ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN-HISDLR-A  195 (210)
T ss_dssp             TTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCBCG-G
T ss_pred             cccc-cccccccccccccccccccccccccccccccccccccccccccccccccc-ccCCCCCCEEECCCC-CCCCCh-h
Confidence            9864 45555555688999999999865432 22346689999999999998764 788999999999998 577777 5


Q ss_pred             cCCCCCCCeeeccC
Q 039126          173 ICKLKSLQHLNLSC  186 (295)
Q Consensus       173 l~~l~~L~~L~l~~  186 (295)
                      +.++++|++|++++
T Consensus       196 l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         196 LAGLKNLDVLELFS  209 (210)
T ss_dssp             GTTCTTCSEEEEEE
T ss_pred             hcCCCCCCEEEccC
Confidence            89999999999875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.59  E-value=1.3e-13  Score=117.61  Aligned_cols=84  Identities=19%  Similarity=0.216  Sum_probs=52.4

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccch
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSI   82 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~   82 (295)
                      +..++++|..  +++|++|++++|+++++|..+   .+|+.|++.+|.+. .++.+  .+.|++|++++| .+..+|. +
T Consensus        47 ~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~-~l~~l--p~~L~~L~L~~n-~l~~lp~-~  116 (353)
T d1jl5a_          47 NLGLSSLPEL--PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLK-ALSDL--PPLLEYLGVSNN-QLEKLPE-L  116 (353)
T ss_dssp             TSCCSCCCSC--CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCS-CCCSC--CTTCCEEECCSS-CCSSCCC-C
T ss_pred             CCCCCCCCCC--CCCCCEEECCCCCCcccccch---hhhhhhhhhhcccc-hhhhh--cccccccccccc-ccccccc-h
Confidence            3456677753  578899999988888887543   45667777766532 23322  134677777764 3455553 4


Q ss_pred             hcccCCcEEccccC
Q 039126           83 RHLNKFVARNLKHC   96 (295)
Q Consensus        83 ~~l~~L~~L~l~~~   96 (295)
                      ..+++|+.+++.++
T Consensus       117 ~~l~~L~~L~l~~~  130 (353)
T d1jl5a_         117 QNSSFLKIIDVDNN  130 (353)
T ss_dssp             TTCTTCCEEECCSS
T ss_pred             hhhccceeeccccc
Confidence            56667777766654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.5e-14  Score=115.46  Aligned_cols=216  Identities=16%  Similarity=0.168  Sum_probs=150.6

Q ss_pred             eeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc-chhcccCCcEEccccC
Q 039126           19 VSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS-SIRHLNKFVARNLKHC   96 (295)
Q Consensus        19 ~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~   96 (295)
                      +.++.++..++.+|..+.  +.+++|++++|.+....+ .|..+++|++|++++|.....++. .+..++.++.+.+..+
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            578888888999987553  579999999998654333 489999999999999877776654 4788999999998877


Q ss_pred             cCCceeCCcc--cCccccEEeccCCCCCcccCc--CCCCCc---eEEccCccccccch-hhhCC-CCCcEEecCCCcCCc
Q 039126           97 RSLTNLSTSI--HLESLKKLILSGCSNLMSFPE--LFYNIK---ELSLDGTAINELPS-SIEYL-SKLVILNLGNSSRLE  167 (295)
Q Consensus        97 ~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~--~~~~L~---~L~l~~~~i~~~~~-~~~~~-~~L~~L~l~~~~~~~  167 (295)
                      ..+...+...  ++++|+.+++.+|.+. ..+.  ....++   .+...++.+..++. .+..+ ..++.+++.+| .+.
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n-~l~  166 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQ  166 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCC
T ss_pred             ccccccccccccccccccccccchhhhc-ccccccccccccccccccccccccccccccccccccccceeeecccc-ccc
Confidence            7777776654  4899999999998654 3332  233344   44555666776643 33333 57888999887 466


Q ss_pred             CcccccCCCCCCCeeeccCCCCCCCchhh-hhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCC
Q 039126          168 GLPSKICKLKSLQHLNLSCCSNLESFPNE-LRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKL  244 (295)
Q Consensus       168 ~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l  244 (295)
                      .++..+....+++.+....+...+.+|.. +..+  ++|++|+++++ +++.++...+   ..+++|+.+++.++.++
T Consensus       167 ~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l--~~L~~L~Ls~N-~l~~l~~~~~---~~l~~L~~l~~~~l~~l  238 (242)
T d1xwdc1         167 EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA--SGPVILDISRT-RIHSLPSYGL---ENLKKLRARSTYNLKKL  238 (242)
T ss_dssp             EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTS--CCCSEEECTTS-CCCCCCSSSC---TTCCEEESSSEESSSCS
T ss_pred             ccccccccchhhhccccccccccccccHHHhcCC--CCCCEEECCCC-cCCccCHHHH---cCCcccccCcCCCCCcC
Confidence            66666666677666655444555666654 5666  99999999986 4788876321   34555555555554433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.49  E-value=1.5e-12  Score=111.00  Aligned_cols=95  Identities=17%  Similarity=0.119  Sum_probs=73.9

Q ss_pred             CCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEcccc
Q 039126           16 KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKH   95 (295)
Q Consensus        16 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   95 (295)
                      .++++|||++++++.+|+.   .++|++|++++|.+. ++|..  ..+|++|++++| .++.++..   .+.|++|++++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~-~lp~~--~~~L~~L~l~~n-~l~~l~~l---p~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLT-ELPEL--PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCS-SCCCC--CTTCCEEECCSS-CCSCCCSC---CTTCCEEECCS
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCc-ccccc--hhhhhhhhhhhc-ccchhhhh---ccccccccccc
Confidence            4789999999999999853   578999999999864 67743  468999999985 44554421   24699999998


Q ss_pred             CcCCceeCCcccCccccEEeccCCCC
Q 039126           96 CRSLTNLSTSIHLESLKKLILSGCSN  121 (295)
Q Consensus        96 ~~~l~~l~~~~~~~~L~~L~l~~~~~  121 (295)
                      | .++.+|....+++|+.|+++++..
T Consensus       108 n-~l~~lp~~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_         108 N-QLEKLPELQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             S-CCSSCCCCTTCTTCCEEECCSSCC
T ss_pred             c-ccccccchhhhccceeeccccccc
Confidence            5 577787666689999999988753

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.45  E-value=1.8e-13  Score=107.38  Aligned_cols=122  Identities=15%  Similarity=0.162  Sum_probs=76.4

Q ss_pred             eeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeeccccccccccccchhcccCCcEEccccC
Q 039126           19 VSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHC   96 (295)
Q Consensus        19 ~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   96 (295)
                      ++++.++++++.+|..+.  +.+++|+|++|.+...++  .|..+++|++|++++|......+..+..+++|++|++++|
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            467777777777776553  567788888887755443  3677778888888776555555556777777777777774


Q ss_pred             cCCceeCCcc--cCccccEEeccCCCCCcccCcC---CCCCceEEccCcccc
Q 039126           97 RSLTNLSTSI--HLESLKKLILSGCSNLMSFPEL---FYNIKELSLDGTAIN  143 (295)
Q Consensus        97 ~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~i~  143 (295)
                       .++.++...  ++++|+.|+|++|++.+-.+..   +.+|++|++++|.+.
T Consensus        89 -~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          89 -KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             -CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             -cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence             555665543  3667777777766533222222   224455555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.7e-13  Score=101.09  Aligned_cols=108  Identities=15%  Similarity=0.134  Sum_probs=78.4

Q ss_pred             CCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccc-hhcccC
Q 039126            9 LSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSS-IRHLNK   87 (295)
Q Consensus         9 ~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~   87 (295)
                      .|.+.++.+++.|+|++|+|+.++..+..+++|++|++++|.+. .++.+..+++|++|++++|. ++.++.. +..+++
T Consensus        11 ~~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~-~l~~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~   88 (162)
T d1a9na_          11 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPD   88 (162)
T ss_dssp             SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCC-EECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTT
T ss_pred             hHhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCC-ccCCcccCcchhhhhccccc-ccCCCccccccccc
Confidence            45556788899999999999998876688999999999999854 56778889999999999864 5556544 567888


Q ss_pred             CcEEccccCcCCceeCC---cccCccccEEeccCC
Q 039126           88 FVARNLKHCRSLTNLST---SIHLESLKKLILSGC  119 (295)
Q Consensus        88 L~~L~l~~~~~l~~l~~---~~~~~~L~~L~l~~~  119 (295)
                      |+.|++++| .++.++.   ...+++|+.|++++|
T Consensus        89 L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          89 LTELILTNN-SLVELGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             CCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             cccceeccc-cccccccccccccccccchhhcCCC
Confidence            888888875 3333332   112455555555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.38  E-value=1.3e-12  Score=102.48  Aligned_cols=117  Identities=19%  Similarity=0.219  Sum_probs=95.8

Q ss_pred             CCCCCcCCCCCCCCCceeEecCCCCccc-cc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccc
Q 039126            3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQ-LW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETH   79 (295)
Q Consensus         3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~   79 (295)
                      +..++++|... .+++++|+|++|.|+. ++ ..++++++|+.|++++|.+....+ .+..+++|++|++++| .+..++
T Consensus        17 ~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~   94 (192)
T d1w8aa_          17 GRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEIS   94 (192)
T ss_dssp             TSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEEC
T ss_pred             CCCcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc-cccccC
Confidence            45677788643 4789999999999975 43 556899999999999999877666 5899999999999996 556665


Q ss_pred             -cchhcccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCC
Q 039126           80 -SSIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNL  122 (295)
Q Consensus        80 -~~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~  122 (295)
                       ..+.++++|++|++++| .++.++...  .+++|++|++++|.+.
T Consensus        95 ~~~F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          95 NKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             HHHHhCCCcccccccCCc-cccccCHHHhcCCcccccccccccccc
Confidence             45899999999999994 677777664  4899999999998653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.4e-12  Score=97.12  Aligned_cols=56  Identities=23%  Similarity=0.151  Sum_probs=24.8

Q ss_pred             CCCCCcEEecCCCcCCcCcc--cccCCCCCCCeeeccCCCCCCCc---hhhhhccCCCCcceee
Q 039126          151 YLSKLVILNLGNSSRLEGLP--SKICKLKSLQHLNLSCCSNLESF---PNELRNLFPCDLYDIE  209 (295)
Q Consensus       151 ~~~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~~---~~~l~~~~~~~L~~L~  209 (295)
                      .+++|+.|++++|. +..++  ..+..+++|++|++++|++....   +..+..+  ++|++||
T Consensus        85 ~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~l--p~L~~LD  145 (162)
T d1a9na_          85 ALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKV--PQVRVLD  145 (162)
T ss_dssp             HCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHC--TTCSEET
T ss_pred             cccccccceecccc-ccccccccccccccccchhhcCCCccccccchHHHHHHHC--CCcCeeC
Confidence            34455555555542 33222  13445555555555555432211   1223444  5666655

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=9e-12  Score=90.29  Aligned_cols=98  Identities=18%  Similarity=0.228  Sum_probs=55.6

Q ss_pred             eeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccccCc
Q 039126           19 VSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCR   97 (295)
Q Consensus        19 ~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~   97 (295)
                      |.|++++|+++.++ .++.+++|++|++++|.+. .+| .+..+++|++|++++| .++.++ .+..+++|+++++++| 
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~N-   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-   75 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccc-cccccC-ccccccccCeEECCCC-
Confidence            35666666666554 3566666666666666543 444 4666666666666663 444444 3566666666666663 


Q ss_pred             CCceeCC---cccCccccEEeccCCCC
Q 039126           98 SLTNLST---SIHLESLKKLILSGCSN  121 (295)
Q Consensus        98 ~l~~l~~---~~~~~~L~~L~l~~~~~  121 (295)
                      .++.++.   ...+++|+.|++++|.+
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcC
Confidence            3333332   12356666666666643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=2.4e-11  Score=87.95  Aligned_cols=119  Identities=19%  Similarity=0.178  Sum_probs=71.8

Q ss_pred             cEEeccCCCCCcccCc--CCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCC
Q 039126          112 KKLILSGCSNLMSFPE--LFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSN  189 (295)
Q Consensus       112 ~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~  189 (295)
                      |.|++++|++ ..++.  .+.+|++|++++|.++.+|..++.+++|+.|++++| .++.+| .+.++++|++|++++|.+
T Consensus         1 R~L~Ls~n~l-~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCC-SSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCC-CCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccc-cccccC-ccccccccCeEECCCCcc
Confidence            3455666543 23332  233566777777777777766777777888888776 455565 377777888888887765


Q ss_pred             CCCc-hhhhhccCCCCcceeecccccccccccccchhhhccCCcccEE
Q 039126          190 LESF-PNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSF  236 (295)
Q Consensus       190 ~~~~-~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L  236 (295)
                      .+.. +..+..+  ++|++|++++++ ++..+.........+|+|+.+
T Consensus        78 ~~~~~~~~l~~~--~~L~~L~l~~N~-i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          78 QQSAAIQPLVSC--PRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSSTTGGGGGC--TTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCchhhcCC--CCCCEEECCCCc-CCcCccHHHHHHHHCcCcceE
Confidence            4322 2345555  778888887743 444443223333456666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.19  E-value=3.1e-11  Score=102.94  Aligned_cols=228  Identities=11%  Similarity=0.073  Sum_probs=154.4

Q ss_pred             CCCCceeEecCCCCccc-----cchhhcCCCCCcEEecCCCCCCCc---CC--------CCCCCCCCcEeecccccccc-
Q 039126           14 RPKNLVSPEIPRNSIKQ-----LWKVVQRLVNLKSINLNHSEHLTE---IP--------SLSLATNLESLNFQRYTSLL-   76 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~L~~~~~~~~---~~--------~~~~l~~L~~L~l~~~~~~~-   76 (295)
                      ...+++.|+|++|.+..     +...+...+.|+.++++++.....   .+        .+..+++|++|++++|..-. 
T Consensus        29 ~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  108 (344)
T d2ca6a1          29 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  108 (344)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccc
Confidence            37889999999998753     456678889999999998754221   11        14678999999999975433 


Q ss_pred             ---ccccchhcccCCcEEccccCcCCceeC-----C----------cccCccccEEeccCCCCCcc----cC---cCCCC
Q 039126           77 ---ETHSSIRHLNKFVARNLKHCRSLTNLS-----T----------SIHLESLKKLILSGCSNLMS----FP---ELFYN  131 (295)
Q Consensus        77 ---~~~~~~~~l~~L~~L~l~~~~~l~~l~-----~----------~~~~~~L~~L~l~~~~~~~~----~~---~~~~~  131 (295)
                         .+...+...++|++|++++|.. +...     .          ....+.|+.+.+++|.....    +.   ....+
T Consensus       109 ~~~~l~~~l~~~~~L~~L~l~~n~l-~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~  187 (344)
T d2ca6a1         109 AQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL  187 (344)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred             cccchhhhhcccccchheecccccc-cccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhh
Confidence               2444566789999999998742 2110     0          01256889999988764322    11   23457


Q ss_pred             CceEEccCccccc------cchhhhCCCCCcEEecCCCcCCc----CcccccCCCCCCCeeeccCCCCCCCchhhhhc--
Q 039126          132 IKELSLDGTAINE------LPSSIEYLSKLVILNLGNSSRLE----GLPSKICKLKSLQHLNLSCCSNLESFPNELRN--  199 (295)
Q Consensus       132 L~~L~l~~~~i~~------~~~~~~~~~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~--  199 (295)
                      ++.|++++|.++.      +...+...++|+.|++++|....    .+...+..++.|++|++++|.+.+.....+..  
T Consensus       188 L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l  267 (344)
T d2ca6a1         188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF  267 (344)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred             hcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHh
Confidence            9999999998862      23345678899999999985322    24445778999999999999877654444432  


Q ss_pred             --cCCCCcceeeccccccccccccc-ch-hhhccCCcccEEeecCCCC
Q 039126          200 --LFPCDLYDIEAHWCSSLETLSGL-SI-IFTKISRNTQSFDFINCFK  243 (295)
Q Consensus       200 --~~~~~L~~L~l~~~~~l~~~~~~-~~-~~~~~~~~L~~L~l~~c~~  243 (295)
                        ...+.|++|+++++. ++..... .. .+....++|+.|+++++.-
T Consensus       268 ~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         268 SKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             HTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             hhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence              212689999999864 5542211 11 1112578899999988653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=6.4e-13  Score=104.66  Aligned_cols=78  Identities=17%  Similarity=0.118  Sum_probs=43.9

Q ss_pred             CCceeEecCCC--CccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEcc
Q 039126           16 KNLVSPEIPRN--SIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNL   93 (295)
Q Consensus        16 ~~L~~L~l~~~--~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   93 (295)
                      ...+.+++.+.  .+..++.++..+++|++|++++|.+ ..++.+..+++|++|++++| .++.++.....+++|+.|++
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I-~~i~~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-EKISSLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEE-SCCCCHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEEC
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECcccCC-CCcccccCCccccChhhccc-cccccccccccccccccccc
Confidence            33445555543  3555666677777777777777764 34455666666666666664 33444433334445555555


Q ss_pred             cc
Q 039126           94 KH   95 (295)
Q Consensus        94 ~~   95 (295)
                      ++
T Consensus       101 ~~  102 (198)
T d1m9la_         101 SY  102 (198)
T ss_dssp             SE
T ss_pred             cc
Confidence            54

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.07  E-value=3.6e-12  Score=100.28  Aligned_cols=111  Identities=21%  Similarity=0.272  Sum_probs=61.4

Q ss_pred             ccccccchhcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccCcC---CCCCceEEccCccccccchhhhC
Q 039126           75 LLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPEL---FYNIKELSLDGTAINELPSSIEY  151 (295)
Q Consensus        75 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~i~~~~~~~~~  151 (295)
                      ++.++..+..+++|++|++++| .++.++....+++|+.|++++|. +..++..   ..+|+.|++++|.++.++ .+..
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n-~I~~i~~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~  113 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTN-NIEKISSLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIEK  113 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEE-EESCCCCHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEECCCHH-HHHH
T ss_pred             hhhhhhHHhcccccceeECccc-CCCCcccccCCccccChhhcccc-cccccccccccccccccccccccccccc-cccc
Confidence            3444445556666666666653 34444432235566666666654 2233321   224566666666666553 3556


Q ss_pred             CCCCcEEecCCCcCCcCcc--cccCCCCCCCeeeccCCCC
Q 039126          152 LSKLVILNLGNSSRLEGLP--SKICKLKSLQHLNLSCCSN  189 (295)
Q Consensus       152 ~~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~  189 (295)
                      +++|+.|++++| .+..++  ..+..+++|+.|++++|++
T Consensus       114 l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             cccccccccccc-hhccccccccccCCCccceeecCCCcc
Confidence            667777777766 344443  2466677777777777653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.5e-09  Score=81.62  Aligned_cols=106  Identities=20%  Similarity=0.214  Sum_probs=72.4

Q ss_pred             CCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeeccccccccccc-cchhcccCCc
Q 039126           13 IRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETH-SSIRHLNKFV   89 (295)
Q Consensus        13 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~   89 (295)
                      ..+.....++.+++.+.++|..+.++++|+.|++.++..+..++  .|..+++|++|++++| .+..++ ..+..+++|+
T Consensus         5 C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             SCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCC
T ss_pred             CCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCccccccccccccc
Confidence            34445567888888888888888888888888887665444554  4788888888888885 455553 4577788888


Q ss_pred             EEccccCcCCceeCCccc-CccccEEeccCCC
Q 039126           90 ARNLKHCRSLTNLSTSIH-LESLKKLILSGCS  120 (295)
Q Consensus        90 ~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~  120 (295)
                      +|++++| .++.++.... ..+|++|+|++|.
T Consensus        84 ~L~Ls~N-~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          84 RLNLSFN-ALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             EEECCSS-CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             ceeccCC-CCcccChhhhccccccccccCCCc
Confidence            8888874 4555555432 3456666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.94  E-value=1.8e-10  Score=98.06  Aligned_cols=225  Identities=12%  Similarity=0.081  Sum_probs=150.0

Q ss_pred             ccchhhcCCCCCcEEecCCCCCCCcCC-----CCCCCCCCcEeeccccccc--c--------ccccchhcccCCcEEccc
Q 039126           30 QLWKVVQRLVNLKSINLNHSEHLTEIP-----SLSLATNLESLNFQRYTSL--L--------ETHSSIRHLNKFVARNLK   94 (295)
Q Consensus        30 ~l~~~~~~l~~L~~L~L~~~~~~~~~~-----~~~~l~~L~~L~l~~~~~~--~--------~~~~~~~~l~~L~~L~l~   94 (295)
                      .+...+.....|+.|+|++|.+..+..     .+...++|+.++++++..-  .        .+...+...++|+.|+++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            456778889999999999997644321     4678899999999875321  1        122334567899999999


Q ss_pred             cCcCCce----eCCcc-cCccccEEeccCCCCCcc----c------------CcCCCCCceEEccCcccc-----ccchh
Q 039126           95 HCRSLTN----LSTSI-HLESLKKLILSGCSNLMS----F------------PELFYNIKELSLDGTAIN-----ELPSS  148 (295)
Q Consensus        95 ~~~~l~~----l~~~~-~~~~L~~L~l~~~~~~~~----~------------~~~~~~L~~L~l~~~~i~-----~~~~~  148 (295)
                      +|..-..    +.... ..++|++|++++|.+...    +            ......++.+.+.++.+.     .+...
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch
Confidence            8643221    11111 268999999999864321    0            123447889999998875     33445


Q ss_pred             hhCCCCCcEEecCCCcCCcC-----cccccCCCCCCCeeeccCCCCCCC----chhhhhccCCCCcceeecccccccccc
Q 039126          149 IEYLSKLVILNLGNSSRLEG-----LPSKICKLKSLQHLNLSCCSNLES----FPNELRNLFPCDLYDIEAHWCSSLETL  219 (295)
Q Consensus       149 ~~~~~~L~~L~l~~~~~~~~-----~p~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~~~L~~L~l~~~~~l~~~  219 (295)
                      +...+.|+.|++++|.....     +...+..+++|+.|++++|.+...    +...+...  ++|++|++++|. +++.
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~--~~L~~L~Ls~n~-i~~~  258 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW--PNLRELGLNDCL-LSAR  258 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC--TTCCEEECTTCC-CCHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccccccc--ccchhhhhhcCc-cCch
Confidence            66788999999999854321     233467789999999999876543    33444555  899999999985 4543


Q ss_pred             cccch--hhh-ccCCcccEEeecCCCCChhhhHhhHHHHHHH
Q 039126          220 SGLSI--IFT-KISRNTQSFDFINCFKLHQNVVQGIINNAQL  258 (295)
Q Consensus       220 ~~~~~--~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~  258 (295)
                      .....  .+. ...+.|++|+++++. ++......+......
T Consensus       259 g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~  299 (344)
T d2ca6a1         259 GAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDE  299 (344)
T ss_dssp             HHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHH
T ss_pred             hhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHc
Confidence            22111  011 235789999999984 777766666555443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=6.9e-10  Score=97.21  Aligned_cols=83  Identities=13%  Similarity=0.111  Sum_probs=59.5

Q ss_pred             CCCceeEecCCCCccc-----cchhhcCCCCCcEEecCCCCCCCc----CC-CCC-CCCCCcEeecccccccc----ccc
Q 039126           15 PKNLVSPEIPRNSIKQ-----LWKVVQRLVNLKSINLNHSEHLTE----IP-SLS-LATNLESLNFQRYTSLL----ETH   79 (295)
Q Consensus        15 ~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~L~~~~~~~~----~~-~~~-~l~~L~~L~l~~~~~~~----~~~   79 (295)
                      ++++++|+|++|.++.     ++..+..+++|+.|+|++|.+...    +. .+. ...+|++|++++|....    .++
T Consensus        26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~  105 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  105 (460)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccccccc
Confidence            6788999999998762     456678899999999999976321    11 222 34579999999975322    234


Q ss_pred             cchhcccCCcEEccccCc
Q 039126           80 SSIRHLNKFVARNLKHCR   97 (295)
Q Consensus        80 ~~~~~l~~L~~L~l~~~~   97 (295)
                      ..+..+++|++|++++|.
T Consensus       106 ~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1         106 STLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHTTSCTTCCEEECCSSB
T ss_pred             chhhcccccccccccccc
Confidence            456778899999998763

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.5e-09  Score=94.96  Aligned_cols=60  Identities=12%  Similarity=0.143  Sum_probs=45.5

Q ss_pred             CCCCceeEecCCCCccc-----cchhhc-CCCCCcEEecCCCCCCCcC----C-CCCCCCCCcEeeccccc
Q 039126           14 RPKNLVSPEIPRNSIKQ-----LWKVVQ-RLVNLKSINLNHSEHLTEI----P-SLSLATNLESLNFQRYT   73 (295)
Q Consensus        14 ~~~~L~~L~l~~~~~~~-----l~~~~~-~l~~L~~L~L~~~~~~~~~----~-~~~~l~~L~~L~l~~~~   73 (295)
                      ..++|+.|||++|.++.     +...+. ...+|++|++++|.+....    + .+..+++|++|++++|.
T Consensus        53 ~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          53 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             cCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence            58899999999998863     233332 2357999999999875432    2 37889999999999864

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=4e-08  Score=73.49  Aligned_cols=79  Identities=18%  Similarity=0.174  Sum_probs=37.7

Q ss_pred             CCcEEecCCCCCCCcCCCCCCCCCCcEeecccccccccccc-chhcccCCcEEccccCcCCceeCCcc--cCccccEEec
Q 039126           40 NLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHS-SIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLIL  116 (295)
Q Consensus        40 ~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l  116 (295)
                      ....++.+++........+..+++|++|++++++.++.++. .+.++++|+.|++++| .++.++...  .+++|+.|+|
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceec
Confidence            34445555554332222455555666666655444555443 2455555555555552 344443322  2444444444


Q ss_pred             cCC
Q 039126          117 SGC  119 (295)
Q Consensus       117 ~~~  119 (295)
                      ++|
T Consensus        88 s~N   90 (156)
T d2ifga3          88 SFN   90 (156)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=2.3e-06  Score=63.96  Aligned_cols=84  Identities=19%  Similarity=0.114  Sum_probs=55.2

Q ss_pred             cchhhcCCCCCcEEecCCCCCCCcC--CC-CCCCCCCcEeecccccccccccc-chhcccCCcEEccccCcCCceeCCc-
Q 039126           31 LWKVVQRLVNLKSINLNHSEHLTEI--PS-LSLATNLESLNFQRYTSLLETHS-SIRHLNKFVARNLKHCRSLTNLSTS-  105 (295)
Q Consensus        31 l~~~~~~l~~L~~L~L~~~~~~~~~--~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~-  105 (295)
                      +......++.|++|++++|.+....  +. +..+++|++|++++| .++.++. .......|+.+++.+|+........ 
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~  135 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS  135 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcCcccch
Confidence            3344467899999999999864422  22 567899999999984 5555553 2334457889999987554333221 


Q ss_pred             ------c-cCccccEEe
Q 039126          106 ------I-HLESLKKLI  115 (295)
Q Consensus       106 ------~-~~~~L~~L~  115 (295)
                            . .+++|+.|+
T Consensus       136 ~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         136 TYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHTTSTTCCEET
T ss_pred             hHHHHHHHHCCCCCEEC
Confidence                  1 278888885

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=3.8e-06  Score=62.78  Aligned_cols=62  Identities=24%  Similarity=0.228  Sum_probs=30.3

Q ss_pred             CCCCceEEccCcccccc---chhhhCCCCCcEEecCCCcCCcCccc-ccCCCCCCCeeeccCCCCCC
Q 039126          129 FYNIKELSLDGTAINEL---PSSIEYLSKLVILNLGNSSRLEGLPS-KICKLKSLQHLNLSCCSNLE  191 (295)
Q Consensus       129 ~~~L~~L~l~~~~i~~~---~~~~~~~~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~  191 (295)
                      +++|++|++++|.++.+   +..+..+++|+.|++++| .++.+++ ...+...|+.|++++|++.+
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCc
Confidence            34455555555555433   233445566666666665 3333332 11123345666666665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.06  E-value=0.00063  Score=50.40  Aligned_cols=13  Identities=0%  Similarity=-0.171  Sum_probs=7.1

Q ss_pred             cCCcccEEeecCC
Q 039126          229 ISRNTQSFDFINC  241 (295)
Q Consensus       229 ~~~~L~~L~l~~c  241 (295)
                      ..++|++|+++..
T Consensus       129 ~n~sL~~l~l~~~  141 (167)
T d1pgva_         129 ENESLLRVGISFA  141 (167)
T ss_dssp             HCSSCCEEECCCC
T ss_pred             hCCCccEeeCcCC
Confidence            3455666666553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.88  E-value=0.00061  Score=50.50  Aligned_cols=104  Identities=16%  Similarity=0.113  Sum_probs=66.5

Q ss_pred             CccccEEeccCCCCCcc-----cC---cCCCCCceEEccCcccc-----ccchhhhCCCCCcEEecCCCcCCcC----cc
Q 039126          108 LESLKKLILSGCSNLMS-----FP---ELFYNIKELSLDGTAIN-----ELPSSIEYLSKLVILNLGNSSRLEG----LP  170 (295)
Q Consensus       108 ~~~L~~L~l~~~~~~~~-----~~---~~~~~L~~L~l~~~~i~-----~~~~~~~~~~~L~~L~l~~~~~~~~----~p  170 (295)
                      .+.|+.|+|++++..+.     +.   ....+|++|++++|.+.     .+...+...+.|++|++++|.....    +.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            47789999987543321     11   12346889999998876     2334455677899999998853322    33


Q ss_pred             cccCCCCCCCeeeccCCCCCC-------CchhhhhccCCCCcceeecccc
Q 039126          171 SKICKLKSLQHLNLSCCSNLE-------SFPNELRNLFPCDLYDIEAHWC  213 (295)
Q Consensus       171 ~~l~~l~~L~~L~l~~~~~~~-------~~~~~l~~~~~~~L~~L~l~~~  213 (295)
                      ..+...+.|++|++++|....       .+...+...  ++|+.|+++..
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n--~sL~~l~l~~~  141 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN--ESLLRVGISFA  141 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC--SSCCEEECCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhC--CCccEeeCcCC
Confidence            457777889999998764322       133334444  78888887653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.84  E-value=0.0051  Score=45.06  Aligned_cols=111  Identities=12%  Similarity=0.053  Sum_probs=69.0

Q ss_pred             CCCCceEEccCc-ccc-----ccchhhhCCCCCcEEecCCCcCCcC----cccccCCCCCCCeeeccCCCCCCCch----
Q 039126          129 FYNIKELSLDGT-AIN-----ELPSSIEYLSKLVILNLGNSSRLEG----LPSKICKLKSLQHLNLSCCSNLESFP----  194 (295)
Q Consensus       129 ~~~L~~L~l~~~-~i~-----~~~~~~~~~~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~~~~~~~----  194 (295)
                      -++|++|++.++ .++     .+...+...++|++|++++|.....    +...+...+.++.+++++|....+..    
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            457888998874 564     2344556778899999998843222    22335567889999999887665433    


Q ss_pred             hhhhccCCCCcceeeccccc-ccccccc-cchhhhccCCcccEEeecCC
Q 039126          195 NELRNLFPCDLYDIEAHWCS-SLETLSG-LSIIFTKISRNTQSFDFINC  241 (295)
Q Consensus       195 ~~l~~~~~~~L~~L~l~~~~-~l~~~~~-~~~~~~~~~~~L~~L~l~~c  241 (295)
                      ..+...  ++|+.++++.+. .+.+-.. .........++|+.|++...
T Consensus        96 ~~l~~~--~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          96 EALQSN--TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HGGGGC--SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHhC--ccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            333444  788877776432 3333221 11222346888999988764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.55  E-value=0.0048  Score=45.21  Aligned_cols=104  Identities=19%  Similarity=0.169  Sum_probs=63.3

Q ss_pred             CccccEEeccCCCCCc-c----cC---cCCCCCceEEccCcccc-----ccchhhhCCCCCcEEecCCCcCCc----Ccc
Q 039126          108 LESLKKLILSGCSNLM-S----FP---ELFYNIKELSLDGTAIN-----ELPSSIEYLSKLVILNLGNSSRLE----GLP  170 (295)
Q Consensus       108 ~~~L~~L~l~~~~~~~-~----~~---~~~~~L~~L~l~~~~i~-----~~~~~~~~~~~L~~L~l~~~~~~~----~~p  170 (295)
                      .+.|++|+++++..++ +    +.   ....+|++|++++|.++     .+...+...++++.+++++|....    .+.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            4778888888743222 1    11   13346888888888775     233445666788888888875432    233


Q ss_pred             cccCCCCCCCeeecc--CCCCCCC----chhhhhccCCCCcceeecccc
Q 039126          171 SKICKLKSLQHLNLS--CCSNLES----FPNELRNLFPCDLYDIEAHWC  213 (295)
Q Consensus       171 ~~l~~l~~L~~L~l~--~~~~~~~----~~~~l~~~~~~~L~~L~l~~~  213 (295)
                      ..+...+.|+.++++  +|.+...    +...+...  +.|+.|+++..
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n--~~L~~L~l~~~  142 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKN--TTLLKFGYHFT  142 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHC--SSCCEEECCCS
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhC--CCcCEEeCcCC
Confidence            456677888876554  4444332    33334444  78888887653