Citrus Sinensis ID: 039136

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MKMLLMKLSLWIGMALIQLHGYKACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCNDWEGVKCNATTLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEccccccEEEEEcccccccccccccccccccccccccccccccccccEEEcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEcccccEEEEEEEccccccccccccccccccHHHHHHHHcccHHHHHHcccccccc
Coil and Loop (DISEMBL)
MKMLLMKLSLWIGMALIQLHGYKACVETKRIALLEIKSFfisasdvgfddeilsswfdddgmssdccndwegvkcnaTTLRVTQLSLnqktkinysdynsysyGVSFLNMsllfhpfeelqrldlsdklv
Flexible Loop (DISEMBL)
MKMLLMKLSLWIGMALIQLHGYKACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCNDWEGVKCNATTLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEelqrldlsdklv
Low Complexity Region (SEG)
MKMLLMKLSLWIGMALIQLHGYKACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCNDWEGVKCNATTLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV
Disordered region (IsUnstruct)
***LLMKLSLWIGMALIQLHGYKACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCNDWEGVKCNATTLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQ*********
Disordered Region (DISOPRED)
****LMKLSLWIGMALIQLHGYKACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCNDWEGVKCNATTLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV
Disordered Region (DISEMBL)
MKMLLMKLSLWIGMALIQLHGYKACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCNDWEGVKCNATTLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV
Disordered Region (DISPRO)
*KMLLMKLSLWIGMALIQLHGYKACVETKRIALLEIKSFFISASD****DEILSSWFDDDGMSSDCCNDWEGVKCNATTLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSD***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKMLLMKLSLWIGMALIQLHGYKACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCNDWEGVKCNATTLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
Q0WR59	1048	Probable inactive recepto	no	no	0.769	0.095	0.282	0.0006

>sp|Q0WR59|Y5020_ARATH Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 24/124 (19%)

Query: 20  HGYKACVETKRIALLEIKSFFISASDVGFDDEILS---SWFDDDGMS--SDCCNDWEGVK 74
           HG  A  ET+  +LLE +         G  DE      SW D   ++  S C NDW G+ 
Sbjct: 17  HGANAVTETELRSLLEFRK--------GIRDETSHQRISWSDTSSLTDPSTCPNDWPGIS 68

Query: 75  CNATTLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPF-----------EELQRL 123
           C+  T  +  ++L+++       +++ S      N+SL  + F             LQ L
Sbjct: 69  CDPETGSIIAINLDRRGLSGELKFSTLSGLTRLRNLSLSGNSFSGRVVPSLGGISSLQHL 128

Query: 124 DLSD 127
           DLSD
Sbjct: 129 DLSD 132

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
297745031	869	unnamed protein product [Vitis vinifera]	0.846	0.126	0.48	9e-19
240256417	908	receptor like protein 56 [Arabidopsis th	0.769	0.110	0.447	3e-16
10177158	888	disease resistance protein-like [Arabido	0.769	0.112	0.447	4e-16
255553271	135	hypothetical protein RCOM_0901460 [Ricin	0.915	0.881	0.428	5e-15
12323813	951	disease resistance protein, putative; 63	0.807	0.110	0.388	3e-14
240254367	976	receptor like protein 14 [Arabidopsis th	0.807	0.107	0.388	3e-14
359483099	1231	PREDICTED: probable LRR receptor-like se	0.923	0.097	0.450	2e-13
240254535	935	receptor like protein 21 [Arabidopsis th	0.761	0.105	0.424	5e-13
4432858	910	putative disease resistance protein [Ara	0.761	0.108	0.424	6e-13
297821945	910	leucine-rich repeat family protein [Arab	0.761	0.108	0.424	2e-12

>gi|297745031|emb|CBI38623.3| unnamed protein product [Vitis vinifera]

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/125 (48%), Positives = 78/125 (62%), Gaps = 15/125 (12%)

Query: 10  LWIGMALIQLHGYKACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCND 69
           +W  M LIQ+HGYK C+E +R+ LLE K F  S ++    D +L SW +D+   SDCC  
Sbjct: 10  IWALMILIQIHGYKCCLEKERMGLLEFKRFLRSNNEDA--DRLLPSWVNDE--ESDCC-Y 64

Query: 70  WEGVKCNATTLRVTQLSLNQKTKINYSDYNSYSYGVS------FLNMSLLFHPFEELQRL 123
           WE V CN+TT  VTQLSLN   +I   ++    YG++      FLN+S LFHPFEEL  L
Sbjct: 65  WERVVCNSTTGTVTQLSLNNIRQI---EFYHRVYGLAPPKKTWFLNVS-LFHPFEELVSL 120

Query: 124 DLSDK 128
           DLS+ 
Sbjct: 121 DLSEN 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256417|ref|NP_199740.4| receptor like protein 56 [Arabidopsis thaliana] gi|332008410|gb|AED95793.1| receptor like protein 56 [Arabidopsis thaliana]

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 14/114 (12%)

Query: 14  MALIQLHGYKACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCNDWEGV 73
           + L  LHG+ +C+E +R ALLE+K F +S  +    D +L +W +D    SDCC  WE +
Sbjct: 2   LLLGHLHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTND--TKSDCC-QWENI 58

Query: 74  KCNATTLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSD 127
           KCN T+ R+T LSL          Y SY   +S LN+SLL HPFEE++ LDLS+
Sbjct: 59  KCNRTSRRLTGLSL----------YTSYYLEISLLNLSLL-HPFEEVRSLDLSN 101

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177158|dbj|BAB10347.1| disease resistance protein-like [Arabidopsis thaliana]

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 14/114 (12%)

Query: 14  MALIQLHGYKACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCNDWEGV 73
           + L  LHG+ +C+E +R ALLE+K F +S  +    D +L +W +D    SDCC  WE +
Sbjct: 2   LLLGHLHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTND--TKSDCC-QWENI 58

Query: 74  KCNATTLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSD 127
           KCN T+ R+T LSL          Y SY   +S LN+SLL HPFEE++ LDLS+
Sbjct: 59  KCNRTSRRLTGLSL----------YTSYYLEISLLNLSLL-HPFEEVRSLDLSN 101

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553271|ref|XP_002517678.1| hypothetical protein RCOM_0901460 [Ricinus communis] gi|223543310|gb|EEF44842.1| hypothetical protein RCOM_0901460 [Ricinus communis]

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 80/126 (63%), Gaps = 7/126 (5%)

Query: 1   MKMLLMKLSLWIGMALIQLHGYKACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDD 60
           M+ L    +LW+ M ++ L GY++C++ +R++LL+IK+ ++  + V   D + SSW  D 
Sbjct: 1   MEKLTAYYNLWVLMIVVSLSGYQSCLKEERLSLLDIKA-YLKVNGVR-TDHVFSSWIADP 58

Query: 61  GMSSDCCNDWEGVKCNATTLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEEL 120
              SDCCN W  VKCN+TT RV +LSLN  + + Y+        + F+NMS LF PFEEL
Sbjct: 59  W--SDCCN-WVRVKCNSTTGRVVELSLNNTSLLEYNQILE-KQELWFVNMS-LFLPFEEL 113

Query: 121 QRLDLS 126
           + LDLS
Sbjct: 114 RYLDLS 119

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12323813|gb|AAG51872.1|AC079678_2 disease resistance protein, putative; 6346-10057 [Arabidopsis thaliana]

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 74/121 (61%), Gaps = 16/121 (13%)

Query: 10  LWIGMALIQLHGYKACVETKRIALLEIKSFFIS-ASDVGFDDEILSSWFDDDGMSSDCCN 68
           +W+ + L+QL GYK C+E +R ALLE+K + IS  +D G  D +L +W +D    S+CC 
Sbjct: 12  IWVMLLLVQLRGYKCCIEKERKALLELKKYMISKTADWGL-DSVLPTWTND--TKSNCCR 68

Query: 69  DWEGVKCNATTLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDK 128
            WEG+KCN T+ R+ +LS+ Q    N+ + +  +  +         HPFEEL+ L+LS +
Sbjct: 69  -WEGLKCNQTSGRIIELSIGQT---NFKESSLLNLSLL--------HPFEELRSLNLSGE 116

Query: 129 L 129
           +
Sbjct: 117 I 117

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254367|ref|NP_177558.4| receptor like protein 14 [Arabidopsis thaliana] gi|332197442|gb|AEE35563.1| receptor like protein 14 [Arabidopsis thaliana]

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 74/121 (61%), Gaps = 16/121 (13%)

Query: 10  LWIGMALIQLHGYKACVETKRIALLEIKSFFIS-ASDVGFDDEILSSWFDDDGMSSDCCN 68
           +W+ + L+QL GYK C+E +R ALLE+K + IS  +D G  D +L +W +D    S+CC 
Sbjct: 12  IWVMLLLVQLRGYKCCIEKERKALLELKKYMISKTADWGL-DSVLPTWTND--TKSNCCR 68

Query: 69  DWEGVKCNATTLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDK 128
            WEG+KCN T+ R+ +LS+ Q    N+ + +  +  +         HPFEEL+ L+LS +
Sbjct: 69  -WEGLKCNQTSGRIIELSIGQT---NFKESSLLNLSLL--------HPFEELRSLNLSGE 116

Query: 129 L 129
           +
Sbjct: 117 I 117

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483099|ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/131 (45%), Positives = 81/131 (61%), Gaps = 11/131 (8%)

Query: 1   MKMLLMKLSLWIG-MALIQLHGYKACVETKRIALLEIKSFFISASDVGFDDEILSSWFDD 59
           M+ L  K  +W+  + L+Q+ G K C+E +++ LLE K+F +  +D G  D +L SW D+
Sbjct: 1   MESLSSKYLMWVFILLLVQICGCKGCIEEEKMGLLEFKAF-LKLND-GHADFLLPSWIDN 58

Query: 60  DGMSSDCCNDWEGVKCNATTLRVTQLSLNQ-KTKINYSDYNSYSY-GVSF--LNMSLLFH 115
           +   SDCCN WE V CN TT RV +LSLN  + + N  + N Y Y  V F  LN+S LF 
Sbjct: 59  N--ISDCCN-WERVICNPTTGRVKKLSLNDIRQQQNMLEVNWYYYENVKFWLLNVS-LFL 114

Query: 116 PFEELQRLDLS 126
           PFEEL  L+LS
Sbjct: 115 PFEELHHLNLS 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254535|ref|NP_180117.4| receptor like protein 21 [Arabidopsis thaliana] gi|330252611|gb|AEC07705.1| receptor like protein 21 [Arabidopsis thaliana]

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 14/113 (12%)

Query: 14  MALIQLHGYKACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCNDWEGV 73
           + L QLHG  +C+E +R ALLE+K + +S S     D +L +W +D    SDCC  W+G+
Sbjct: 2   LLLGQLHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTND--TKSDCC-QWDGI 58

Query: 74  KCNATTLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLS 126
           KCN T+ RV +LS+           + Y    S LN+SLL HPFEE++ L+LS
Sbjct: 59  KCNRTSGRVIELSVG----------DMYFKESSPLNLSLL-HPFEEVRSLNLS 100

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4432858|gb|AAD20706.1| putative disease resistance protein [Arabidopsis thaliana]

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 14/113 (12%)

Query: 14  MALIQLHGYKACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCNDWEGV 73
           + L QLHG  +C+E +R ALLE+K + +S S     D +L +W +D    SDCC  W+G+
Sbjct: 2   LLLGQLHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTND--TKSDCC-QWDGI 58

Query: 74  KCNATTLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLS 126
           KCN T+ RV +LS+           + Y    S LN+SLL HPFEE++ L+LS
Sbjct: 59  KCNRTSGRVIELSVG----------DMYFKESSPLNLSLL-HPFEEVRSLNLS 100

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821945|ref|XP_002878855.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297324694|gb|EFH55114.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 66/113 (58%), Gaps = 14/113 (12%)

Query: 14  MALIQLHGYKACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCNDWEGV 73
           + L QLHG K C+  +R ALLE+K + +S S     D +L +W +D    SDCC  W+G+
Sbjct: 2   LLLGQLHGCKGCIMKEREALLELKKYLMSRSRESGLDYVLPTWTND--TKSDCC-QWDGI 58

Query: 74  KCNATTLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLS 126
           KCN T+ RV  LS+           + Y    S LN+SLL HPFEE++ L+LS
Sbjct: 59  KCNRTSRRVIGLSVG----------DMYFKESSPLNLSLL-HPFEEVRSLNLS 100

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.807	0.107	0.438	1.4e-18
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.769	0.110	0.447	3.1e-17
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.761	0.105	0.424	5.3e-14
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.792	0.106	0.347	7.5e-12
TAIR|locus:2082274	325	FLR1 "AT3G12145" [Arabidopsis	0.669	0.267	0.355	3e-05
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.653	0.078	0.356	4.6e-05
TAIR|locus:2184058	1048	AT5G10020 [Arabidopsis thalian	0.815	0.101	0.301	0.0004
TAIR|locus:2154463	589	AT5G23400 [Arabidopsis thalian	0.407	0.089	0.421	0.00053
TAIR|locus:2096349	860	RLP31 "receptor like protein 3	0.638	0.096	0.362	0.00085

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 53/121 (43%), Positives = 78/121 (64%)

Query:    10 LWIGMALIQLHGYKACVETKRIALLEIKSFFIS-ASDVGFDDEILSSWFDDDGMSSDCCN 68
             +W+ + L+QL GYK C+E +R ALLE+K + IS  +D G D  +L +W +D    S+CC 
Sbjct:    12 IWVMLLLVQLRGYKCCIEKERKALLELKKYMISKTADWGLDS-VLPTWTNDT--KSNCCR 68

Query:    69 DWEGVKCNATTLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDK 128
              WEG+KCN T+ R+ +LS+ Q    N+ +        S LN+SLL HPFEEL+ L+LS +
Sbjct:    69 -WEGLKCNQTSGRIIELSIGQT---NFKES-------SLLNLSLL-HPFEELRSLNLSGE 116

Query:   129 L 129
             +
Sbjct:   117 I 117

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 3.1e-17, P = 3.1e-17
 Identities = 51/114 (44%), Positives = 70/114 (61%)

Query:    14 MALIQLHGYKACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCNDWEGV 73
             + L  LHG+ +C+E +R ALLE+K F +S  +    D +L +W +D    SDCC  WE +
Sbjct:     2 LLLGHLHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDT--KSDCCQ-WENI 58

Query:    74 KCNATTLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSD 127
             KCN T+ R+T LSL          Y SY   +S LN+SLL HPFEE++ LDLS+
Sbjct:    59 KCNRTSRRLTGLSL----------YTSYYLEISLLNLSLL-HPFEEVRSLDLSN 101

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 5.3e-14, P = 5.3e-14
 Identities = 48/113 (42%), Positives = 68/113 (60%)

Query:    14 MALIQLHGYKACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCNDWEGV 73
             + L QLHG  +C+E +R ALLE+K + +S S     D +L +W +D    SDCC  W+G+
Sbjct:     2 LLLGQLHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTNDT--KSDCCQ-WDGI 58

Query:    74 KCNATTLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLS 126
             KCN T+ RV +LS+           + Y    S LN+SLL HPFEE++ L+LS
Sbjct:    59 KCNRTSGRVIELSVG----------DMYFKESSPLNLSLL-HPFEEVRSLNLS 100

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 7.5e-12, P = 7.5e-12
 Identities = 40/115 (34%), Positives = 67/115 (58%)

Query:     2 KMLLMKLSLWIGMALIQLHGYKACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDG 61
             K+ L    +W+ + + QLHGYK+C++ ++IAL E++   IS ++    + +L +W +D  
Sbjct:     4 KVFLGHNLIWVMLLMGQLHGYKSCIDEEKIALFELRKHMISRTE---SESVLPTWTNDT- 59

Query:    62 MSSDCCNDWEGVKCNATTLRVTQ-----LSLNQKTKINYSDYNSYSYGVSFLNMS 111
              +SDCC  W+GV CN  + RVT+     LSL   + +N S  + +   V  LN+S
Sbjct:    60 -TSDCCR-WKGVACNRVSGRVTEISFGGLSLKDNSLLNLSLLHPFE-DVRSLNLS 111

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2082274 FLR1 "AT3G12145" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 37/104 (35%), Positives = 50/104 (48%)

Query:     1 MKMLLMKLSLWIGMALIQLHGYKACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDD 60
             MK L + LS++  +  I L    +C E  + ALL+IK        +G +  +LSSW    
Sbjct:     1 MK-LFVHLSIFFSILFITLPSSYSCTENDKNALLQIKKA------LG-NPPLLSSW---- 48

Query:    61 GMSSDCCNDWEGVKCNATTLRVTQLSLNQKTKINYSDYNSYSYG 104
                +DCC  W GV+C  T  RVT LS+   T    S   SY  G
Sbjct:    49 NPRTDCCTGWTGVEC--TNRRVTGLSV---TSGEVSGQISYQIG 87

GO:0004857 "enzyme inhibitor activity" evidence=ISS

GO:0008134 "transcription factor binding" evidence=IDA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IEP

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 4.6e-05, P = 4.6e-05
 Identities = 36/101 (35%), Positives = 52/101 (51%)

Query:    31 IALLEIKSFFISASDVGFDDE----ILSSWFDDDGMSSDCCNDWEGVKCN-ATTLRVTQL 85
             + LL++KS+  +  D   ++E    IL SW   +G   DCC  WE VKC+ A    V  L
Sbjct:     1 MGLLQLKSYLKNLVDAEEEEEEGLSILKSWTHHEG---DCCR-WERVKCSDAINGHVIGL 56

Query:    86 SLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLS 126
             SL++   + +            LN+SLL H F +LQ L+LS
Sbjct:    57 SLDRLVPVAFESQTRS------LNLSLL-HSFPQLQSLNLS 90

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2184058 AT5G10020 [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 0.00040, P = 0.00040
 Identities = 38/126 (30%), Positives = 59/126 (46%)

Query:    16 LIQLHGYKACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMS--SDCCNDWEGV 73
             L+ LHG  A  ET+  +LLE +       D      I  SW D   ++  S C NDW G+
Sbjct:    13 LLLLHGANAVTETELRSLLEFRK---GIRDETSHQRI--SWSDTSSLTDPSTCPNDWPGI 67

Query:    74 KCNATTLRVTQLSLNQKTKINYSDYNSYSYGVSFL-NMSLLFHPFE-----------ELQ 121
              C+  T  +  ++L+++       +++ S G++ L N+SL  + F             LQ
Sbjct:    68 SCDPETGSIIAINLDRRGLSGELKFSTLS-GLTRLRNLSLSGNSFSGRVVPSLGGISSLQ 126

Query:   122 RLDLSD 127
              LDLSD
Sbjct:   127 HLDLSD 132

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2154463 AT5G23400 [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00053, P = 0.00053
 Identities = 27/64 (42%), Positives = 32/64 (50%)

Query:    25 CVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCN-DWEGVKCNATTLRVT 83
             C    R  LL  KS  I  +  G    +L SW     +  DCCN DWEGV+CN  T +VT
Sbjct:    31 CSSQDRATLLGFKSSIIEDT-TG----VLDSW-----VGKDCCNGDWEGVQCNPATGKVT 80

Query:    84 QLSL 87
              L L
Sbjct:    81 GLVL 84

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2096349 RLP31 "receptor like protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00085, P = 0.00085
 Identities = 33/91 (36%), Positives = 46/91 (50%)

Query:    25 CVETKRIALLEIKSFF--ISASDVGFDDEILSSWFDDDGMSSDCCNDWEGVKCNATTLRV 82
             C   +R ALLE K  F  ++ S+    D  LSSW      S DCC+ WEGV C+A +  V
Sbjct:    30 CRHDQRNALLEFKHEFPRVNESNQIPYDVSLSSW----NKSIDCCS-WEGVTCDAISSEV 84

Query:    83 TQLSLNQKTKINYSDYNSYSYGVSFL-NMSL 112
               L+L+     N    NS  + +  L N++L
Sbjct:    85 ISLNLSHVPLNNSLKPNSGLFKLQHLHNLTL 115


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      130       130   0.00091  102 3  11 22  0.36    31
                                                     29  0.42    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  149 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.04u 0.11s 12.15t   Elapsed:  00:00:01
  Total cpu time:  12.04u 0.11s 12.15t   Elapsed:  00:00:01
  Start:  Fri May 10 10:35:41 2013   End:  Fri May 10 10:35:42 2013

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	130
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	7e-05

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 37.3 bits (87), Expect = 7e-05
 Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 9/45 (20%)

Query: 32 ALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCNDWEGVKCN 76
          ALL  KS              LSSW       SD C+ W GV C+
Sbjct: 7  ALLAFKSSLNGDPS-----GALSSWNPSS---SDPCS-WTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.99
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.46
PLN03150	623	hypothetical protein; Provisional	98.28
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.05
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	95.91
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	95.65
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.54
PLN03150	623	hypothetical protein; Provisional	93.33
KOG4237	498	consensus Extracellular matrix protein slit, conta	92.67
smart00370	26	LRR Leucine-rich repeats, outliers.	91.99
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.99
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	91.07
KOG0472	565	consensus Leucine-rich repeat protein [Function un	90.68
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	89.83
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.41
KOG0472	565	consensus Leucine-rich repeat protein [Function un	88.05
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	87.78
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	86.93
KOG0617	264	consensus Ras suppressor protein (contains leucine	80.69

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.99  E-value=2.8e-09  Score=92.94  Aligned_cols=89  Identities=27%  Similarity=0.390  Sum_probs=65.6

Q ss_pred             CHHHHHHHHHHHHhcccccCCCCCCccCCCCCCCCCCCCCCCCCCceEEecCCCCceEEEecCCCCCcccCCCC------
Q 039136           26 VETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCNDWEGVKCNATTLRVTQLSLNQKTKINYSDYN------   99 (130)
Q Consensus        26 ~~~~~~aL~~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~~~C~~W~GV~C~~~~~rV~~L~L~~~~~~~l~~~~------   99 (130)
                      .+.|+.+|++||+.+.    ++.+  .+.+|+.  .  .+||. |.||.|+. .++|+.|++.+++   ++|..      
T Consensus        27 ~~~~~~~l~~~~~~~~----~~~~--~~~~w~~--~--~~~c~-w~gv~c~~-~~~v~~L~L~~~~---i~~~~~~~~~~   91 (968)
T PLN00113         27 HAEELELLLSFKSSIN----DPLK--YLSNWNS--S--ADVCL-WQGITCNN-SSRVVSIDLSGKN---ISGKISSAIFR   91 (968)
T ss_pred             CHHHHHHHHHHHHhCC----CCcc--cCCCCCC--C--CCCCc-CcceecCC-CCcEEEEEecCCC---ccccCChHHhC
Confidence            4478899999999986    6654  5788976  2  68999 99999985 4799999999887   65420      


Q ss_pred             ---------CCcccccccccccccccCccCCeEeCCCCCC
Q 039136          100 ---------SYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       100 ---------~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                               ..+.++|.+|..+ |..+++|++|||++|++
T Consensus        92 l~~L~~L~Ls~n~~~~~ip~~~-~~~l~~L~~L~Ls~n~l  130 (968)
T PLN00113         92 LPYIQTINLSNNQLSGPIPDDI-FTTSSSLRYLNLSNNNF  130 (968)
T ss_pred             CCCCCEEECCCCccCCcCChHH-hccCCCCCEEECcCCcc
Confidence                     1223556777766 34778888888887764

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.46  E-value=3.4e-07  Score=51.28  Aligned_cols=41  Identities=39%  Similarity=0.704  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHhcccccCC-CCCCccCCCCCCCCCCCCCCCCCCceEEec
Q 039136           27 ETKRIALLEIKSFFISASDV-GFDDEILSSWFDDDGMSSDCCNDWEGVKCN   76 (130)
Q Consensus        27 ~~~~~aL~~~k~~l~~~~~~-~~~~~~l~~W~~~~~~~~~~C~~W~GV~C~   76 (130)
                      +.|+.+|++||..+.    . +.+  .+.+|+...  ..+||+ |.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~----~~~~~--~l~~W~~~~--~~~~C~-W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLN----NDPSG--VLSSWNPSS--DSDPCS-WSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-----SC-C--CCTT--TT----S-CCC-STTEEE-
T ss_pred             cHHHHHHHHHHHhcc----cccCc--ccccCCCcC--CCCCee-eccEEeC
Confidence            468999999999996    3 333  788998741  158999 9999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PLN03150 hypothetical protein; Provisional

Probab=98.28  E-value=2.6e-06  Score=72.12  Aligned_cols=87  Identities=24%  Similarity=0.302  Sum_probs=62.5

Q ss_pred             CCCHHHHHHHHHHHHhcccccCCCCCCccCCCCCCCCCCCCCCC-----CCCceEEecC--CC--CceEEEecCCCCCcc
Q 039136           24 ACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCC-----NDWEGVKCNA--TT--LRVTQLSLNQKTKIN   94 (130)
Q Consensus        24 ~~~~~~~~aL~~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~~~C-----~~W~GV~C~~--~~--~rV~~L~L~~~~~~~   94 (130)
                      .+.+.|..+|..+|..+.    ++.    ..+|.+      ++|     . |.||.|..  ..  .+|+.|+|.+++   
T Consensus       368 ~t~~~~~~aL~~~k~~~~----~~~----~~~W~g------~~C~p~~~~-w~Gv~C~~~~~~~~~~v~~L~L~~n~---  429 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLG----LPL----RFGWNG------DPCVPQQHP-WSGADCQFDSTKGKWFIDGLGLDNQG---  429 (623)
T ss_pred             ccCchHHHHHHHHHHhcC----Ccc----cCCCCC------CCCCCcccc-cccceeeccCCCCceEEEEEECCCCC---
Confidence            455678999999998875    332    236865      334     5 99999952  11  258999999988   


Q ss_pred             cCCC---------------CCCcccccccccccccccCccCCeEeCCCCCC
Q 039136           95 YSDY---------------NSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        95 l~~~---------------~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      ++|.               -..+.+.|.+|..+  +.+++|+.|||++|+|
T Consensus       430 L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~--~~l~~L~~LdLs~N~l  478 (623)
T PLN03150        430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL--GSITSLEVLDLSYNSF  478 (623)
T ss_pred             ccccCCHHHhCCCCCCEEECCCCcccCcCChHH--hCCCCCCEEECCCCCC
Confidence            7652               02334678888888  8899999999998875

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.05  E-value=0.00047  Score=38.67  Aligned_cols=34  Identities=24%  Similarity=0.379  Sum_probs=27.7

Q ss_pred             eEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136           82 VTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        82 V~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      +..|++.+++   +          ..+|+++  ++|++|++|++++|++
T Consensus         3 L~~L~l~~N~---i----------~~l~~~l--~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    3 LEELDLSNNQ---I----------TDLPPEL--SNLPNLETLNLSNNPI   36 (44)
T ss_dssp             -SEEEETSSS--------------SSHGGHG--TTCTTSSEEEETSSCC
T ss_pred             ceEEEccCCC---C----------cccCchH--hCCCCCCEEEecCCCC
Confidence            5678888888   6          3688888  9999999999999986

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=95.91  E-value=0.006  Score=35.87  Aligned_cols=37  Identities=22%  Similarity=0.337  Sum_probs=28.9

Q ss_pred             CceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136           80 LRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .++..|+++++.   +          ..+++.. |..+++|++|++++|+|
T Consensus        25 ~~L~~L~l~~N~---l----------~~i~~~~-f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen   25 PNLETLDLSNNN---L----------TSIPPDA-FSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSS---E----------SEEETTT-TTTSTTESEEEETSSSB
T ss_pred             CCCCEeEccCCc---c----------CccCHHH-HcCCCCCCEEeCcCCcC
Confidence            468888888888   6          3555543 48999999999999985

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=95.65  E-value=0.008  Score=35.32  Aligned_cols=36  Identities=22%  Similarity=0.364  Sum_probs=28.5

Q ss_pred             ceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136           81 RVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        81 rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      ++..|++.++.   +          -.+|+.. |..+++|++||+++|.+
T Consensus         2 ~L~~L~l~~n~---l----------~~i~~~~-f~~l~~L~~L~l~~N~l   37 (61)
T PF13855_consen    2 NLESLDLSNNK---L----------TEIPPDS-FSNLPNLETLDLSNNNL   37 (61)
T ss_dssp             TESEEEETSST---E----------SEECTTT-TTTGTTESEEEETSSSE
T ss_pred             cCcEEECCCCC---C----------CccCHHH-HcCCCCCCEeEccCCcc
Confidence            46778888888   6          3677654 48999999999999974

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.54  E-value=0.04  Score=24.52  Aligned_cols=13  Identities=38%  Similarity=0.595  Sum_probs=8.8

Q ss_pred             ccCCeEeCCCCCC
Q 039136          118 EELQRLDLSDKLV  130 (130)
Q Consensus       118 ~~L~~LdLs~N~l  130 (130)
                      ++|+.|||++|+|
T Consensus         1 ~~L~~L~l~~n~L   13 (17)
T PF13504_consen    1 PNLRTLDLSNNRL   13 (17)
T ss_dssp             TT-SEEEETSS--
T ss_pred             CccCEEECCCCCC
Confidence            4689999999975

...

>PLN03150 hypothetical protein; Provisional

Probab=93.33  E-value=0.062  Score=45.84  Aligned_cols=46  Identities=17%  Similarity=0.188  Sum_probs=35.0

Q ss_pred             CceEEEecCCCCCcccCCC---------------CCCcccccccccccccccCccCCeEeCCCCCC
Q 039136           80 LRVTQLSLNQKTKINYSDY---------------NSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        80 ~rV~~L~L~~~~~~~l~~~---------------~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .++..|+|.++.   +.|.               -.++.++|.+|..+  ++|++|++|||++|+|
T Consensus       442 ~~L~~L~Ls~N~---l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l--~~L~~L~~L~Ls~N~l  502 (623)
T PLN03150        442 RHLQSINLSGNS---IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL--GQLTSLRILNLNGNSL  502 (623)
T ss_pred             CCCCEEECCCCc---ccCcCChHHhCCCCCCEEECCCCCCCCCCchHH--hcCCCCCEEECcCCcc
Confidence            356777888777   6541               02334789999999  9999999999999975

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=92.67  E-value=0.078  Score=43.29  Aligned_cols=36  Identities=28%  Similarity=0.453  Sum_probs=30.3

Q ss_pred             ceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136           81 RVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        81 rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      ..++|.|+.++   +          -.||+.. |..+.+|+.||||+|++
T Consensus        68 ~tveirLdqN~---I----------~~iP~~a-F~~l~~LRrLdLS~N~I  103 (498)
T KOG4237|consen   68 ETVEIRLDQNQ---I----------SSIPPGA-FKTLHRLRRLDLSKNNI  103 (498)
T ss_pred             cceEEEeccCC---c----------ccCChhh-ccchhhhceecccccch
Confidence            46788999888   7          4788765 69999999999999985

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.99  E-value=0.13  Score=24.98  Aligned_cols=14  Identities=36%  Similarity=0.629  Sum_probs=12.0

Q ss_pred             CccCCeEeCCCCCC
Q 039136          117 FEELQRLDLSDKLV  130 (130)
Q Consensus       117 l~~L~~LdLs~N~l  130 (130)
                      |++|++|+|++|++
T Consensus         1 L~~L~~L~L~~N~l   14 (26)
T smart00370        1 LPNLRELDLSNNQL   14 (26)
T ss_pred             CCCCCEEECCCCcC
Confidence            56899999999975

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.99  E-value=0.13  Score=24.98  Aligned_cols=14  Identities=36%  Similarity=0.629  Sum_probs=12.0

Q ss_pred             CccCCeEeCCCCCC
Q 039136          117 FEELQRLDLSDKLV  130 (130)
Q Consensus       117 l~~L~~LdLs~N~l  130 (130)
                      |++|++|+|++|++
T Consensus         1 L~~L~~L~L~~N~l   14 (26)
T smart00369        1 LPNLRELDLSNNQL   14 (26)
T ss_pred             CCCCCEEECCCCcC
Confidence            56899999999975

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=91.07  E-value=0.064  Score=25.30  Aligned_cols=12  Identities=42%  Similarity=0.540  Sum_probs=10.0

Q ss_pred             cCCeEeCCCCCC
Q 039136          119 ELQRLDLSDKLV  130 (130)
Q Consensus       119 ~L~~LdLs~N~l  130 (130)
                      +|++|||++|+|
T Consensus         1 ~L~~Ldls~n~l   12 (22)
T PF00560_consen    1 NLEYLDLSGNNL   12 (22)
T ss_dssp             TESEEEETSSEE
T ss_pred             CccEEECCCCcC
Confidence            489999999964

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.68  E-value=0.16  Score=41.70  Aligned_cols=35  Identities=20%  Similarity=0.294  Sum_probs=29.7

Q ss_pred             ceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136           81 RVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        81 rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      +++.++|.++.   +          -.||+.+  +++++|++|++++|.|
T Consensus       506 nL~tLDL~nNd---l----------q~IPp~L--gnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  506 NLTTLDLQNND---L----------QQIPPIL--GNMTNLRHLELDGNPF  540 (565)
T ss_pred             hcceeccCCCc---h----------hhCChhh--ccccceeEEEecCCcc
Confidence            46667777776   6          5899999  9999999999999986

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=89.83  E-value=0.26  Score=24.60  Aligned_cols=13  Identities=38%  Similarity=0.595  Sum_probs=11.2

Q ss_pred             ccCCeEeCCCCCC
Q 039136          118 EELQRLDLSDKLV  130 (130)
Q Consensus       118 ~~L~~LdLs~N~l  130 (130)
                      ++|++|||++|.|
T Consensus         2 ~~L~~LdL~~N~i   14 (28)
T smart00368        2 PSLRELDLSNNKL   14 (28)
T ss_pred             CccCEEECCCCCC
Confidence            4789999999975

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.41  E-value=0.17  Score=24.06  Aligned_cols=14  Identities=36%  Similarity=0.529  Sum_probs=9.3

Q ss_pred             CccCCeEeCCCCCC
Q 039136          117 FEELQRLDLSDKLV  130 (130)
Q Consensus       117 l~~L~~LdLs~N~l  130 (130)
                      +++|++|||++|++
T Consensus         1 ~~~L~~L~l~~n~i   14 (24)
T PF13516_consen    1 NPNLETLDLSNNQI   14 (24)
T ss_dssp             -TT-SEEE-TSSBE
T ss_pred             CCCCCEEEccCCcC
Confidence            46799999999974

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.05  E-value=0.26  Score=40.61  Aligned_cols=23  Identities=26%  Similarity=0.192  Sum_probs=21.2

Q ss_pred             cccccccccccCccCCeEeCCCCCC
Q 039136          106 SFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       106 G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      ..+|.++  +.+..||.||+|+|+|
T Consensus       448 n~LP~e~--~~lv~Lq~LnlS~NrF  470 (565)
T KOG0472|consen  448 NDLPEEM--GSLVRLQTLNLSFNRF  470 (565)
T ss_pred             hhcchhh--hhhhhhheeccccccc
Confidence            7899998  8999999999999987

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=87.78  E-value=0.46  Score=23.56  Aligned_cols=14  Identities=36%  Similarity=0.631  Sum_probs=11.8

Q ss_pred             CccCCeEeCCCCCC
Q 039136          117 FEELQRLDLSDKLV  130 (130)
Q Consensus       117 l~~L~~LdLs~N~l  130 (130)
                      +.+|+.|+|++|.+
T Consensus         1 L~~L~~L~L~~NkI   14 (26)
T smart00365        1 LTNLEELDLSQNKI   14 (26)
T ss_pred             CCccCEEECCCCcc
Confidence            46899999999975

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=86.93  E-value=0.49  Score=41.85  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=10.4

Q ss_pred             ccccccccccccCccCCeEeCCCCC
Q 039136          105 VSFLNMSLLFHPFEELQRLDLSDKL  129 (130)
Q Consensus       105 ~G~ip~~l~~~~l~~L~~LdLs~N~  129 (130)
                      +|.+|..+  ..++.|++||+++|+
T Consensus       560 ~~~~p~~l--~~l~~L~~l~ls~N~  582 (968)
T PLN00113        560 SGEIPKNL--GNVESLVQVNISHNH  582 (968)
T ss_pred             cccCChhH--hcCcccCEEeccCCc
Confidence            34444444  444444444444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=80.69  E-value=0.29  Score=36.13  Aligned_cols=22  Identities=18%  Similarity=0.211  Sum_probs=14.4

Q ss_pred             cccccccccccCccCCeEeCCCCC
Q 039136          106 SFLNMSLLFHPFEELQRLDLSDKL  129 (130)
Q Consensus       106 G~ip~~l~~~~l~~L~~LdLs~N~  129 (130)
                      -.+|.++  +.+++|+.|+++-|.
T Consensus        69 e~lp~~i--ssl~klr~lnvgmnr   90 (264)
T KOG0617|consen   69 EELPTSI--SSLPKLRILNVGMNR   90 (264)
T ss_pred             hhcChhh--hhchhhhheecchhh
Confidence            4566666  667777777766654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	130
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-07

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.9 bits (133), Expect = 5e-10
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 25/104 (24%)

Query: 24  ACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCNDWEGVKCNATTLRVT 83
             +  +   L+  K           D  +L  W      + + C  ++GV C     +VT
Sbjct: 8   QSLYREIHQLISFKDVLP-------DKNLLPDWSS----NKNPCT-FDGVTCRDD--KVT 53

Query: 84  QLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSD 127
            + L+             + G S ++ SLL      L+ L LS+
Sbjct: 54  SIDLS---------SKPLNVGFSAVSSSLL--SLTGLESLFLSN 86

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 14/66 (21%)

Query: 25 CVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCC-NDWEGVKCNATT--LR 81
          C    + ALL+IK           +   LSSW      ++DCC   W GV C+  T   R
Sbjct: 3  CNPQDKQALLQIKKDLG-------NPTTLSSWLP----TTDCCNRTWLGVLCDTDTQTYR 51

Query: 82 VTQLSL 87
          V  L L
Sbjct: 52 VNNLDL 57

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.98
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.22
3e6j_A	229	Variable lymphocyte receptor diversity region; var	96.91
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.54
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	96.46
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	96.36
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	96.24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	96.13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	95.78
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	95.43
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	95.17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.16
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	95.13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	95.07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	95.03
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	94.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	94.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	94.71
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	94.57
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	94.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	94.48
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	94.23
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	93.94
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	93.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	93.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	93.64
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	93.46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	93.41
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	93.39
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	93.31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	93.13
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	92.97
3e6j_A	229	Variable lymphocyte receptor diversity region; var	92.79
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	92.71
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	92.67
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	92.51
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	92.41
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	92.22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	92.21
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	92.19
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	92.07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	92.05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	92.02
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	92.01
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	91.93
3m19_A	251	Variable lymphocyte receptor A diversity region; a	91.78
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	91.51
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	91.4
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	91.07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	90.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	90.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	90.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	90.83
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	90.76
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	90.67
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	90.61
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	90.61
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	90.59
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	90.5
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	90.31
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	90.31
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	90.25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	89.98
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	89.89
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	89.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	89.84
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	89.74
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	89.62
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	89.46
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	89.41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	89.26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	89.15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	89.13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	88.8
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	88.74
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	88.74
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	88.68
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	88.6
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	88.57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	88.55
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	88.51
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	88.48
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	88.47
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	88.39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	88.38
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	88.28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	88.06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	87.99
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	87.85
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	87.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	87.7
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	87.57
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	87.5
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	87.4
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	87.34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	87.22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	87.21
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	86.69
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	86.53
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	86.37
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	86.24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	86.13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	85.95
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	85.47
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	85.44
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	85.0
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	84.74
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	84.72
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	84.63
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	84.25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	83.58
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	83.46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	82.58
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	82.44
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	82.06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	81.68
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	81.53
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	80.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	80.74
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	80.18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	80.05

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.16  E-value=2.9e-11  Score=101.80  Aligned_cols=90  Identities=19%  Similarity=0.283  Sum_probs=65.9

Q ss_pred             CCCCCHHHHHHHHHHHHhcccccCCCCCCccCCCCCCCCCCCCCCCCCCceEEecCCCCceEEEecCCCCCcccCCC---
Q 039136           22 YKACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCNDWEGVKCNATTLRVTQLSLNQKTKINYSDY---   98 (130)
Q Consensus        22 ~~~~~~~~~~aL~~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~~~C~~W~GV~C~~~~~rV~~L~L~~~~~~~l~~~---   98 (130)
                      +....+.|+.||++||+.+.    ++.   .+.+|..  +  .+||. |.||.|+  .++|++|+|++.+   ++|.   
T Consensus         6 ~~~~~~~~~~all~~k~~~~----~~~---~l~~W~~--~--~~~C~-w~gv~C~--~~~v~~L~L~~~~---l~g~~~~   68 (768)
T 3rgz_A            6 PSQSLYREIHQLISFKDVLP----DKN---LLPDWSS--N--KNPCT-FDGVTCR--DDKVTSIDLSSKP---LNVGFSA   68 (768)
T ss_dssp             --CCHHHHHHHHHHHHTTCS----CTT---SSTTCCT--T--SCGGG-STTEEEE--TTEEEEEECTTSC---CCEEHHH
T ss_pred             cccCCHHHHHHHHHHHhhCC----Ccc---cccCCCC--C--CCCcC-CcceEEC--CCcEEEEECCCCC---cCCccCc
Confidence            34446779999999999986    664   5789975  3  68999 9999998  4899999999988   7541   


Q ss_pred             -----------C-CCccccccc--ccccccccCccCCeEeCCCCCC
Q 039136           99 -----------N-SYSYGVSFL--NMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        99 -----------~-~~~~~~G~i--p~~l~~~~l~~L~~LdLs~N~l  130 (130)
                                 . ......|.+  |..+  +.+++|++|||++|.+
T Consensus        69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~--~~l~~L~~L~Ls~n~l  112 (768)
T 3rgz_A           69 VSSSLLSLTGLESLFLSNSHINGSVSGF--KCSASLTSLDLSRNSL  112 (768)
T ss_dssp             HHHHTTTCTTCCEEECTTSCEEECCCCC--CCCTTCCEEECCSSEE
T ss_pred             cChhHhccCcccccCCcCCCcCCCchhh--ccCCCCCEEECCCCcC
Confidence                       0 000122333  3677  8899999999998864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.14  E-value=9.4e-11  Score=89.01  Aligned_cols=91  Identities=31%  Similarity=0.497  Sum_probs=67.1

Q ss_pred             CCCHHHHHHHHHHHHhcccccCCCCCCccCCCCCCCCCCCCCCCC-CCceEEecCCC--CceEEEecCCCCCcccCC--C
Q 039136           24 ACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCN-DWEGVKCNATT--LRVTQLSLNQKTKINYSD--Y   98 (130)
Q Consensus        24 ~~~~~~~~aL~~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~~~C~-~W~GV~C~~~~--~rV~~L~L~~~~~~~l~~--~   98 (130)
                      .|.+.|+.+|++||+.+.    ++.   .+.+|...    .+||. .|.||.|+...  ++|++|++.+++   +++  .
T Consensus         2 ~c~~~~~~aL~~~k~~~~----~~~---~l~~W~~~----~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~---l~~~~~   67 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLG----NPT---TLSSWLPT----TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN---LPKPYP   67 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT----CCG---GGTTCCTT----SCTTTTCSTTEEECCSSSCCCEEEEEEECCC---CSSCEE
T ss_pred             CCCHHHHHHHHHHHHhcC----Ccc---cccCCCCC----CCCCcCCCcceEeCCCCCCceEEEEECCCCC---ccCCcc
Confidence            588899999999999986    553   57889762    57774 39999998644  799999999998   754  1


Q ss_pred             -----------C----C-CcccccccccccccccCccCCeEeCCCCCC
Q 039136           99 -----------N----S-YSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        99 -----------~----~-~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                                 .    . ++.+.|.+|..+  +++++|++|+|++|++
T Consensus        68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l  113 (313)
T 1ogq_A           68 IPSSLANLPYLNFLYIGGINNLVGPIPPAI--AKLTQLHYLYITHTNV  113 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGG--GGCTTCSEEEEEEECC
T ss_pred             cChhHhCCCCCCeeeCCCCCcccccCChhH--hcCCCCCEEECcCCee
Confidence                       0    1 133556777777  7777777777777654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.98  E-value=6.5e-10  Score=91.90  Aligned_cols=81  Identities=23%  Similarity=0.145  Sum_probs=64.3

Q ss_pred             CCHHHHHHHHHHHHhcccccCCCCCC------ccCCCCCCCCCCCCCCCCCC---ceEEecCCCCceEEEecCCCCCccc
Q 039136           25 CVETKRIALLEIKSFFISASDVGFDD------EILSSWFDDDGMSSDCCNDW---EGVKCNATTLRVTQLSLNQKTKINY   95 (130)
Q Consensus        25 ~~~~~~~aL~~~k~~l~~~~~~~~~~------~~l~~W~~~~~~~~~~C~~W---~GV~C~~~~~rV~~L~L~~~~~~~l   95 (130)
                      ....|+.||.+++..+.    ++.-.      ....+|+.  +  .+||. |   .||.|+.. +||++|+|.+++   +
T Consensus        27 ~~~~d~~aL~~~~~~~~----~~~w~~~~~~~~~~~~W~~--~--~~~c~-w~~~~GV~C~~~-~~V~~L~L~~~~---l   93 (636)
T 4eco_A           27 EYIKDYLALKEIWDALN----GKNWSQQGFGTQPGANWNF--N--KELDM-WGAQPGVSLNSN-GRVTGLSLEGFG---A   93 (636)
T ss_dssp             HHHHHHHHHHHHHHHTT----GGGCCCCC------CCCCC--S--SCGGG-TTCCTTEEECTT-CCEEEEECTTSC---C
T ss_pred             hHHHHHHHHHHHHHHcC----CCCcccCCcCCccCCCCCC--C--CCccc-ccCCCCeEEcCC-CCEEEEEecCcc---c
Confidence            33568999999999875    22100      01236876  2  68999 9   99999864 899999999999   7


Q ss_pred             CCCCCCcccccccccccccccCccCCeEeCCCCC
Q 039136           96 SDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKL  129 (130)
Q Consensus        96 ~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~  129 (130)
                               +|.+|+++  ++|++|++|||++|.
T Consensus        94 ---------~g~lp~~l--~~L~~L~~L~Ls~N~  116 (636)
T 4eco_A           94 ---------SGRVPDAI--GQLTELEVLALGSHG  116 (636)
T ss_dssp             ---------EEEECGGG--GGCTTCCEEESCCGG
T ss_pred             ---------CCcCChHH--hcCccceEEECcCCc
Confidence                     69999999  999999999999995

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.91  E-value=1.6e-09  Score=93.27  Aligned_cols=79  Identities=24%  Similarity=0.216  Sum_probs=62.8

Q ss_pred             CCCHHHHHHHHHHHHhcccccCCCCCCccCCCCCCCCC-CCCCC--CCCC------------ceEEecCCCCceEEEecC
Q 039136           24 ACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDG-MSSDC--CNDW------------EGVKCNATTLRVTQLSLN   88 (130)
Q Consensus        24 ~~~~~~~~aL~~~k~~l~~~~~~~~~~~~l~~W~~~~~-~~~~~--C~~W------------~GV~C~~~~~rV~~L~L~   88 (130)
                      .+...|+.||++||..+.    ++       +|+..++ ...+|  |. |            .||.|+. .+||++|+|.
T Consensus       265 ~~~~~d~~ALl~~k~~l~----~~-------~W~~~~~~~~~~~~~C~-W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls  331 (876)
T 4ecn_A          265 AEYIKDYKALKAIWEALD----GK-------NWRYYSGTINNTIHSLN-WNFNKELDMWGDQPGVDLDN-NGRVTGLSLA  331 (876)
T ss_dssp             CHHHHHHHHHHHHHHHTT----GG-------GCCCCCSSCSSCCCCCS-CCCSSCGGGTTCCTTEEECT-TSCEEEEECT
T ss_pred             ccchHHHHHHHHHHHHcC----CC-------CCCcCCCcccccCCccc-cccccccccccCcCceEecC-CCCEEEEECc
Confidence            345679999999999985    32       5765210 00245  99 9            9999986 5899999999


Q ss_pred             CCCCcccCCCCCCcccccccccccccccCccCCeEeC-CCCC
Q 039136           89 QKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDL-SDKL  129 (130)
Q Consensus        89 ~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdL-s~N~  129 (130)
                      +++   +         +|.+|+++  ++|++|++||| ++|.
T Consensus       332 ~~~---L---------~G~ip~~l--~~L~~L~~LdLss~N~  359 (876)
T 4ecn_A          332 GFG---A---------KGRVPDAI--GQLTELKVLSFGTHSE  359 (876)
T ss_dssp             TTC---C---------EEEECGGG--GGCTTCCEEESCCTTH
T ss_pred             cCC---C---------CCcCchHH--hccccceEeeeccccc
Confidence            999   7         69999999  99999999999 7774

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.22  E-value=1.5e-07  Score=71.85  Aligned_cols=92  Identities=14%  Similarity=0.133  Sum_probs=60.8

Q ss_pred             CCCHHHHHHHHHHHHhcccccCCCCCCccCCCCC---CCCCCCCCCCCCCceEEecC--------CCCceEEEecCCCCC
Q 039136           24 ACVETKRIALLEIKSFFISASDVGFDDEILSSWF---DDDGMSSDCCNDWEGVKCNA--------TTLRVTQLSLNQKTK   92 (130)
Q Consensus        24 ~~~~~~~~aL~~~k~~l~~~~~~~~~~~~l~~W~---~~~~~~~~~C~~W~GV~C~~--------~~~rV~~L~L~~~~~   92 (130)
                      ....+++.+|.+||..+.   .++.+  ....|.   .. .  .++|. |.|+.|+.        ...+|+.|++.+++ 
T Consensus        23 ~~~~~~~~aLl~~k~~~~---~~~~~--~~~~w~~~~~~-~--~~~~~-~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~-   92 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYN---ADRNR--WHSAWRQANSN-N--PQIET-RTGRALKATADLLEDATQPGRVALELRSVP-   92 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHH---HCCTT--HHHHHHHHTTT-C--TTSCC-SHHHHHHHHHHHHHHHTSTTCCEEEEESSC-
T ss_pred             ccCchHHHHHHHHHHhcc---CCchh--hhhhhcccccc-c--ccccc-cCCcchhhhHHHHhcccccceeEEEccCCC-
Confidence            344578899999999874   14433  566784   21 2  57899 99999952        24689999999888 


Q ss_pred             cccCCCC--------------CCcccccccccccccccCccCCeEeCCCCCC
Q 039136           93 INYSDYN--------------SYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        93 ~~l~~~~--------------~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                        ++...              .++.++ .+|..+  +.+++|++|||++|++
T Consensus        93 --l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~--~~l~~L~~L~Ls~n~l  139 (328)
T 4fcg_A           93 --LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM--QQFAGLETLTLARNPL  139 (328)
T ss_dssp             --CSSCCSCGGGGTTCSEEEEESSCCC-CCCSCG--GGGTTCSEEEEESCCC
T ss_pred             --chhcChhhhhCCCCCEEECCCCCcc-chhHHH--hccCCCCEEECCCCcc
Confidence              53210              112233 667666  7777777777777764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=96.91  E-value=0.00088  Score=48.14  Aligned_cols=61  Identities=18%  Similarity=0.305  Sum_probs=38.6

Q ss_pred             CCCCCCCceEEecCC---------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCcc
Q 039136           64 SDCCNDWEGVKCNAT---------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEE  119 (130)
Q Consensus        64 ~~~C~~W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~  119 (130)
                      ...|. |.+|.|...         ...+..|++.++.   +++..               .++.+ ..+|+.. |..+++
T Consensus        16 ~~~Cs-~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~-~~~l~~   89 (229)
T 3e6j_A           16 QCSCS-GTTVDCRSKRHASVPAGIPTNAQILYLHDNQ---ITKLEPGVFDSLINLKELYLGSNQL-GALPVGV-FDSLTQ   89 (229)
T ss_dssp             TCEEE-TTEEECTTSCCSSCCSCCCTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTT-TTTCTT
T ss_pred             CCEEe-CCEeEccCCCcCccCCCCCCCCCEEEcCCCc---cCccCHHHhhCccCCcEEECCCCCC-CCcChhh-cccCCC
Confidence            57899 999999752         1346778888887   64321               11112 3444432 367788


Q ss_pred             CCeEeCCCCCC
Q 039136          120 LQRLDLSDKLV  130 (130)
Q Consensus       120 L~~LdLs~N~l  130 (130)
                      |++|||++|++
T Consensus        90 L~~L~Ls~N~l  100 (229)
T 3e6j_A           90 LTVLDLGTNQL  100 (229)
T ss_dssp             CCEEECCSSCC
T ss_pred             cCEEECCCCcC
Confidence            88888887764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.54  E-value=0.0029  Score=47.64  Aligned_cols=59  Identities=19%  Similarity=0.155  Sum_probs=39.4

Q ss_pred             CCCCCceEEecCC-----------CCceEEEecCC-CCCcccCCC---------------CCCcccccccccccccccCc
Q 039136           66 CCNDWEGVKCNAT-----------TLRVTQLSLNQ-KTKINYSDY---------------NSYSYGVSFLNMSLLFHPFE  118 (130)
Q Consensus        66 ~C~~W~GV~C~~~-----------~~rV~~L~L~~-~~~~~l~~~---------------~~~~~~~G~ip~~l~~~~l~  118 (130)
                      .|. |..|.|...           ..++..|+|.+ +.   +++.               -.++.+++..|..+  ..|+
T Consensus         7 ~C~-~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~---l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~   80 (347)
T 2ifg_A            7 PHG-SSGLRCTRDGALDSLHHLPGAENLTELYIENQQH---LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF--HFTP   80 (347)
T ss_dssp             CSS-SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSS---CCEECGGGSCSCCCCSEEECCSSCCCEECTTGG--GSCS
T ss_pred             ccc-CCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCC---CCCcChhHhccccCCCEEECCCCccceeCHHHh--cCCc
Confidence            377 888888653           12377888885 66   4331               02333666666666  8888


Q ss_pred             cCCeEeCCCCCC
Q 039136          119 ELQRLDLSDKLV  130 (130)
Q Consensus       119 ~L~~LdLs~N~l  130 (130)
                      +|++|||++|+|
T Consensus        81 ~L~~L~l~~N~l   92 (347)
T 2ifg_A           81 RLSRLNLSFNAL   92 (347)
T ss_dssp             CCCEEECCSSCC
T ss_pred             CCCEEeCCCCcc
Confidence            888888888875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=96.46  E-value=0.0027  Score=44.45  Aligned_cols=60  Identities=20%  Similarity=0.265  Sum_probs=36.6

Q ss_pred             CCCCCCceEEecCC---------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccC
Q 039136           65 DCCNDWEGVKCNAT---------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEEL  120 (130)
Q Consensus        65 ~~C~~W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L  120 (130)
                      ..|. |.++.|...         ..+++.|++.++.   +++..               .++.++ .+|+.. |..+++|
T Consensus         5 C~C~-~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~-~~~l~~L   78 (208)
T 2o6s_A            5 CSCS-GTTVECYSQGRTSVPTGIPAQTTYLDLETNS---LKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGV-FNKLTSL   78 (208)
T ss_dssp             CEEE-TTEEECCSSCCSSCCSCCCTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTT-TTTCTTC
T ss_pred             CEEC-CCEEEecCCCccCCCCCCCCCCcEEEcCCCc---cCcCChhhhcccccCcEEECCCCccC-ccChhh-cCCCCCc
Confidence            4577 999999652         1257788888877   54310               111233 334332 2677888


Q ss_pred             CeEeCCCCCC
Q 039136          121 QRLDLSDKLV  130 (130)
Q Consensus       121 ~~LdLs~N~l  130 (130)
                      ++|+|++|++
T Consensus        79 ~~L~Ls~n~l   88 (208)
T 2o6s_A           79 TYLNLSTNQL   88 (208)
T ss_dssp             CEEECCSSCC
T ss_pred             CEEECCCCcC
Confidence            8888887764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=96.36  E-value=0.0034  Score=42.85  Aligned_cols=60  Identities=18%  Similarity=0.260  Sum_probs=35.0

Q ss_pred             CCCCCCceEEecCC---------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccC
Q 039136           65 DCCNDWEGVKCNAT---------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEEL  120 (130)
Q Consensus        65 ~~C~~W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L  120 (130)
                      ..|. |.++.|...         ...++.|++.++.   +++..               .++.+++..+..+  ..+++|
T Consensus         5 C~C~-~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L   78 (177)
T 2o6r_A            5 CSCS-GTEIRCNSKGLTSVPTGIPSSATRLELESNK---LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF--DKLTKL   78 (177)
T ss_dssp             CEEE-TTEEECCSSCCSSCCTTCCTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--TTCTTC
T ss_pred             CEeC-CCEEEecCCCCccCCCCCCCCCcEEEeCCCc---ccEeCHHHhcCcccccEEECCCCcceEeChhHc--cCCCcc
Confidence            3467 999998642         1356778888777   53310               1122332222334  677778


Q ss_pred             CeEeCCCCCC
Q 039136          121 QRLDLSDKLV  130 (130)
Q Consensus       121 ~~LdLs~N~l  130 (130)
                      ++|+|++|++
T Consensus        79 ~~L~l~~N~l   88 (177)
T 2o6r_A           79 TILYLHENKL   88 (177)
T ss_dssp             CEEECCSSCC
T ss_pred             CEEECCCCCc
Confidence            8888877764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.28  E-value=0.0039  Score=42.74  Aligned_cols=58  Identities=19%  Similarity=0.343  Sum_probs=32.3

Q ss_pred             CCCCceEEecCC---------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCCe
Q 039136           67 CNDWEGVKCNAT---------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQR  122 (130)
Q Consensus        67 C~~W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~~  122 (130)
                      |. |..+.|...         ...+..|+|.++.   +++..               .++.++ .+|+.. |..+++|++
T Consensus         9 C~-~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~---i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~-f~~l~~L~~   82 (170)
T 3g39_A            9 CS-GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQ---ITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGV-FDKLTQLTQ   82 (170)
T ss_dssp             EE-TTEEECTTSCCSSCCSCCCTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTT-TTTCTTCCE
T ss_pred             cC-CCEEEeCCCCcCccCccCCCCCcEEEcCCCc---CCccChhhhcCcccCCEEECCCCCcC-ccChhh-ccCCCCCCE
Confidence            55 777777541         1346677777777   54320               112233 333332 267777777


Q ss_pred             EeCCCCCC
Q 039136          123 LDLSDKLV  130 (130)
Q Consensus       123 LdLs~N~l  130 (130)
                      |+|++|+|
T Consensus        83 L~L~~N~l   90 (170)
T 3g39_A           83 LSLNDNQL   90 (170)
T ss_dssp             EECCSSCC
T ss_pred             EECCCCcc
Confidence            77777764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=96.24  E-value=0.0043  Score=45.83  Aligned_cols=50  Identities=24%  Similarity=0.434  Sum_probs=30.4

Q ss_pred             CCCCCCceEEecCC---------CCceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCC
Q 039136           65 DCCNDWEGVKCNAT---------TLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKL  129 (130)
Q Consensus        65 ~~C~~W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~  129 (130)
                      ..|. |.++.|...         ...++.|++.++.   ++          .+|... |.++++|++|+|++|+
T Consensus         5 C~C~-~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~---l~----------~i~~~~-~~~l~~L~~L~L~~n~   63 (306)
T 2z66_A            5 CSCS-GTEIRCNSKGLTSVPTGIPSSATRLELESNK---LQ----------SLPHGV-FDKLTQLTKLSLSSNG   63 (306)
T ss_dssp             CEEE-TTEEECCSSCCSSCCSCCCTTCCEEECCSSC---CC----------CCCTTT-TTTCTTCSEEECCSSC
T ss_pred             CeeC-CCEEEcCCCCcccCCCCCCCCCCEEECCCCc---cC----------ccCHhH-hhccccCCEEECCCCc
Confidence            3478 999999752         1357788888877   52          344332 2455555555555554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=96.13  E-value=0.0047  Score=49.08  Aligned_cols=58  Identities=24%  Similarity=0.350  Sum_probs=36.1

Q ss_pred             CCCCCceEEecCC-----------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCcc
Q 039136           66 CCNDWEGVKCNAT-----------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEE  119 (130)
Q Consensus        66 ~C~~W~GV~C~~~-----------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~  119 (130)
                      .|. |.|+ |+..           ..+++.|+++++.   +++..               ..+.+++..|..+  +.+++
T Consensus         3 ~C~-~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~   75 (549)
T 2z81_A            3 SCD-ASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNK---ITYIGHGDLRACANLQVLILKSSRINTIEGDAF--YSLGS   75 (549)
T ss_dssp             EEC-TTSE-EECTTSCCSSCCSCCCTTCCEEECCSSC---CCEECSSTTSSCTTCCEEECTTSCCCEECTTTT--TTCTT
T ss_pred             cCC-CCce-EECCCCccccccccCCCCccEEECcCCc---cCccChhhhhcCCcccEEECCCCCcCccChhhc--ccccc
Confidence            477 8887 7632           1357888888877   54210               1122445555566  77888


Q ss_pred             CCeEeCCCCCC
Q 039136          120 LQRLDLSDKLV  130 (130)
Q Consensus       120 L~~LdLs~N~l  130 (130)
                      |++|||++|++
T Consensus        76 L~~L~Ls~n~l   86 (549)
T 2z81_A           76 LEHLDLSDNHL   86 (549)
T ss_dssp             CCEEECTTSCC
T ss_pred             CCEEECCCCcc
Confidence            88888888764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=95.78  E-value=0.0052  Score=44.83  Aligned_cols=15  Identities=20%  Similarity=0.339  Sum_probs=8.4

Q ss_pred             ccCccCCeEeCCCCC
Q 039136          115 HPFEELQRLDLSDKL  129 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~  129 (130)
                      ..+++|++|+|++|.
T Consensus        82 ~~l~~L~~L~l~~n~   96 (270)
T 2o6q_A           82 KELKNLETLWVTDNK   96 (270)
T ss_dssp             SSCTTCCEEECCSSC
T ss_pred             cCCCCCCEEECCCCc
Confidence            455555555555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=95.43  E-value=0.015  Score=40.54  Aligned_cols=25  Identities=24%  Similarity=0.151  Sum_probs=16.2

Q ss_pred             cccccccccccccCccCCeEeCCCCCC
Q 039136          104 GVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      +++..+..+  ..+++|++|+|++|++
T Consensus        66 i~~i~~~~f--~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           66 ISTLSNQSF--SNMTQLLTLILSYNRL   90 (193)
T ss_dssp             CCCCCTTTT--TTCTTCCEEECCSSCC
T ss_pred             CCEeCHhHc--cCCCCCCEEECCCCcc
Confidence            344334455  7778888888887764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=95.17  E-value=0.021  Score=40.59  Aligned_cols=59  Identities=19%  Similarity=0.229  Sum_probs=38.2

Q ss_pred             CCCCCceEEecCC---------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCC
Q 039136           66 CCNDWEGVKCNAT---------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQ  121 (130)
Q Consensus        66 ~C~~W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~  121 (130)
                      .|. |..+.|...         ...++.|++.++.   +++..               .++.+++..|..+  ..+++|+
T Consensus        10 ~C~-~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~---i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~   83 (220)
T 2v9t_B           10 TCS-NNIVDCRGKGLTEIPTNLPETITEIRLEQNT---IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF--QGLRSLN   83 (220)
T ss_dssp             EEE-TTEEECTTSCCSSCCSSCCTTCCEEECCSSC---CCEECTTSSTTCTTCCEEECCSSCCCEECTTTT--TTCSSCC
T ss_pred             EEC-CCEEEcCCCCcCcCCCccCcCCCEEECCCCc---CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh--hCCcCCC
Confidence            366 888888642         1257788888877   53210               1222455556666  8888888


Q ss_pred             eEeCCCCCC
Q 039136          122 RLDLSDKLV  130 (130)
Q Consensus       122 ~LdLs~N~l  130 (130)
                      +|+|++|++
T Consensus        84 ~L~Ls~N~l   92 (220)
T 2v9t_B           84 SLVLYGNKI   92 (220)
T ss_dssp             EEECCSSCC
T ss_pred             EEECCCCcC
Confidence            888888875

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.16  E-value=0.015  Score=43.75  Aligned_cols=22  Identities=27%  Similarity=0.253  Sum_probs=15.9

Q ss_pred             ccccccccccCccCCeEeCCCCCC
Q 039136          107 FLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       107 ~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .+|+.+ |..++ |++|+|++|.|
T Consensus        94 ~~~~~~-~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           94 SLSWKT-VQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             CCCSTT-TCSCC-CCEEECCSSCC
T ss_pred             eeCHHH-cccCC-ceEEEeeCCCc
Confidence            456554 35555 99999999975

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=95.13  E-value=0.015  Score=39.92  Aligned_cols=16  Identities=31%  Similarity=0.582  Sum_probs=11.6

Q ss_pred             ccCccCCeEeCCCCCC
Q 039136          115 HPFEELQRLDLSDKLV  130 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~l  130 (130)
                      ..+++|++|||++|+|
T Consensus        78 ~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           78 DKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             TTCTTCCEEECCSSCC
T ss_pred             CCcchhhEEECCCCcc
Confidence            6777777777777764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=95.07  E-value=0.015  Score=48.74  Aligned_cols=25  Identities=20%  Similarity=0.145  Sum_probs=16.2

Q ss_pred             cccccccccccccCccCCeEeCCCCCC
Q 039136          104 GVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      ++|.||.++  +++++|++||||+|++
T Consensus       668 l~g~ip~~l--~~L~~L~~LdLs~N~l  692 (768)
T 3rgz_A          668 ISGSIPDEV--GDLRGLNILDLSSNKL  692 (768)
T ss_dssp             CCSCCCGGG--GGCTTCCEEECCSSCC
T ss_pred             cCCCCChHH--hCCCCCCEEECCCCcc
Confidence            566666666  6666666666666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=95.03  E-value=0.011  Score=44.90  Aligned_cols=49  Identities=16%  Similarity=0.372  Sum_probs=36.1

Q ss_pred             CCCCceEEecCC---------CCceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136           67 CNDWEGVKCNAT---------TLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        67 C~~W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      |. +..|.|...         ...+++|+|.++.   +          ..||+.. |.+|++|++|||++|++
T Consensus         9 C~-~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~---i----------~~i~~~~-f~~l~~L~~L~Ls~N~i   66 (350)
T 4ay9_X            9 CS-NRVFLCQESKVTEIPSDLPRNAIELRFVLTK---L----------RVIQKGA-FSGFGDLEKIEISQNDV   66 (350)
T ss_dssp             EE-TTEEEEESTTCCSCCTTCCTTCSEEEEESCC---C----------SEECTTS-STTCTTCCEEEEECCTT
T ss_pred             ee-CCEEEecCCCCCccCcCcCCCCCEEEccCCc---C----------CCcCHHH-HcCCCCCCEEECcCCCC
Confidence            77 888999642         1246778888887   6          3677643 38999999999999974

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=94.92  E-value=0.023  Score=39.39  Aligned_cols=15  Identities=27%  Similarity=0.403  Sum_probs=8.4

Q ss_pred             ccCccCCeEeCCCCC
Q 039136          115 HPFEELQRLDLSDKL  129 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~  129 (130)
                      ..+++|++|||++|+
T Consensus        99 ~~l~~L~~L~L~~N~  113 (192)
T 1w8a_A           99 LGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             cCCCCCCEEECCCCc
Confidence            555555555555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=94.92  E-value=0.025  Score=42.62  Aligned_cols=60  Identities=23%  Similarity=0.341  Sum_probs=36.2

Q ss_pred             CCCCCCCceEEecCC-----------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccC
Q 039136           64 SDCCNDWEGVKCNAT-----------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPF  117 (130)
Q Consensus        64 ~~~C~~W~GV~C~~~-----------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l  117 (130)
                      ..+|. |.|+ |+..           ...++.|++.++.   +++..               ..+.+++..|..+  .++
T Consensus        27 ~~~C~-~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l   99 (353)
T 2z80_A           27 SLSCD-RNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNR---ITYISNSDLQRCVNLQALVLTSNGINTIEEDSF--SSL   99 (353)
T ss_dssp             CCEEC-TTSE-EECCSTTCSSCCTTCCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTSCCCEECTTTT--TTC
T ss_pred             CCCCC-CCeE-eeCCCCCcccccccccccCcEEECCCCc---CcccCHHHhccCCCCCEEECCCCccCccCHhhc--CCC
Confidence            45677 8876 6421           1257788888877   53210               1122444445556  778


Q ss_pred             ccCCeEeCCCCCC
Q 039136          118 EELQRLDLSDKLV  130 (130)
Q Consensus       118 ~~L~~LdLs~N~l  130 (130)
                      ++|++|||++|++
T Consensus       100 ~~L~~L~Ls~n~l  112 (353)
T 2z80_A          100 GSLEHLDLSYNYL  112 (353)
T ss_dssp             TTCCEEECCSSCC
T ss_pred             CCCCEEECCCCcC
Confidence            8888888888764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=94.71  E-value=0.018  Score=41.48  Aligned_cols=25  Identities=16%  Similarity=0.177  Sum_probs=15.5

Q ss_pred             cccccccccccccCccCCeEeCCCCCC
Q 039136          104 GVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      +++..|..+  ..+++|++|+|++|++
T Consensus        71 l~~~~~~~~--~~l~~L~~L~L~~n~l   95 (251)
T 3m19_A           71 LQTLSAGVF--DDLTELGTLGLANNQL   95 (251)
T ss_dssp             CCCCCTTTT--TTCTTCCEEECTTSCC
T ss_pred             CCccCHhHh--ccCCcCCEEECCCCcc
Confidence            344444445  6777777777777764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=94.57  E-value=0.033  Score=43.10  Aligned_cols=46  Identities=13%  Similarity=0.127  Sum_probs=29.4

Q ss_pred             CceEEEecCCCCCcccCCCC---------------CCccccccccc-ccccccCccCCeEeCCCCCC
Q 039136           80 LRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNM-SLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        80 ~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~-~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .+++.|+++++.   +++..               ..+...+.+++ .+  ..+++|++|||++|++
T Consensus        30 ~~l~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~--~~l~~L~~L~Ls~n~l   91 (455)
T 3v47_A           30 AHVNYVDLSLNS---IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF--RGLSSLIILKLDYNQF   91 (455)
T ss_dssp             TTCCEEECCSSC---CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTT--TTCTTCCEEECTTCTT
T ss_pred             CccCEEEecCCc---cCcCChhHhccCccccEEECcCCcccceECcccc--cccccCCEEeCCCCcc
Confidence            357888888887   54310               11223456654 45  7888888888888864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=94.55  E-value=0.03  Score=38.45  Aligned_cols=22  Identities=9%  Similarity=0.116  Sum_probs=16.0

Q ss_pred             ccccc-cccccCccCCeEeCCCCCC
Q 039136          107 FLNMS-LLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       107 ~ip~~-l~~~~l~~L~~LdLs~N~l  130 (130)
                      .+|+. +  ..+++|++|+|++|.+
T Consensus        95 ~l~~~~~--~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           95 SIPRGAF--DNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCCTTTT--TTCTTCSEEECCSSCB
T ss_pred             eeCHHHh--ccccCCCEEEeCCCCc
Confidence            34444 5  7888888888888864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=94.48  E-value=0.031  Score=36.76  Aligned_cols=35  Identities=29%  Similarity=0.342  Sum_probs=25.8

Q ss_pred             CceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136           80 LRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .++..+++.++.   ++         +.  ..+  +.+++|++|+|++|.+
T Consensus        42 ~~L~~L~l~~n~---l~---------~~--~~~--~~l~~L~~L~Ls~n~i   76 (149)
T 2je0_A           42 EELEFLSTINVG---LT---------SI--ANL--PKLNKLKKLELSDNRV   76 (149)
T ss_dssp             TTCCEEECTTSC---CC---------CC--TTC--CCCTTCCEEECCSSCC
T ss_pred             CCCcEEECcCCC---CC---------Cc--hhh--hcCCCCCEEECCCCcc
Confidence            567777777777   62         33  556  7888999999998875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=94.23  E-value=0.041  Score=38.09  Aligned_cols=25  Identities=16%  Similarity=0.187  Sum_probs=19.7

Q ss_pred             cccccccccccccCccCCeEeCCCCCC
Q 039136          104 GVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      +++.+|..+  ..+++|++|+|++|.|
T Consensus       114 l~~~~~~~~--~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A          114 ISCVMPGSF--EHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCEECTTSS--TTCTTCCEEECTTCCB
T ss_pred             CCeeCHHHh--hcCCCCCEEEeCCCCc
Confidence            566667777  8888888888888864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=93.94  E-value=0.043  Score=37.36  Aligned_cols=25  Identities=12%  Similarity=-0.000  Sum_probs=18.9

Q ss_pred             cccccccccccccCccCCeEeCCCCCC
Q 039136          104 GVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      +++..+..+  ..+++|++|+|++|.+
T Consensus        90 l~~~~~~~~--~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           90 LKSIPRGAF--DNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CCCCCTTTT--TTCTTCCEEECCSSCB
T ss_pred             cCEeCHHHh--cCCCCCCEEEeCCCCC
Confidence            344334456  8999999999999974

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=93.73  E-value=0.034  Score=37.33  Aligned_cols=19  Identities=26%  Similarity=0.527  Sum_probs=13.4

Q ss_pred             cccccccCccCCeEeCCCCCC
Q 039136          110 MSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       110 ~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      ..+  ..+++|++|+|++|++
T Consensus        65 ~~~--~~l~~L~~L~Ls~N~l   83 (168)
T 2ell_A           65 SNL--PKLPKLKKLELSENRI   83 (168)
T ss_dssp             SSC--CCCSSCCEEEEESCCC
T ss_pred             hhh--ccCCCCCEEECcCCcC
Confidence            455  6777777777777764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=93.68  E-value=0.054  Score=38.36  Aligned_cols=23  Identities=35%  Similarity=0.277  Sum_probs=18.7

Q ss_pred             ccccccccccCccCCeEeCCCCCC
Q 039136          107 FLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       107 ~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .+|+.+ |..+++|++|+|++|++
T Consensus        94 ~l~~~~-f~~l~~L~~L~L~~N~l  116 (220)
T 2v9t_B           94 ELPKSL-FEGLFSLQLLLLNANKI  116 (220)
T ss_dssp             CCCTTT-TTTCTTCCEEECCSSCC
T ss_pred             ccCHhH-ccCCCCCCEEECCCCCC
Confidence            566654 48899999999999975

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=93.64  E-value=0.06  Score=37.44  Aligned_cols=25  Identities=12%  Similarity=0.097  Sum_probs=18.3

Q ss_pred             cccccccccccccCccCCeEeCCCCCC
Q 039136          104 GVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      +++..|..+  ..+++|++|+|++|++
T Consensus        90 l~~i~~~~f--~~l~~L~~L~L~~N~l  114 (193)
T 2wfh_A           90 LRCIPPRTF--DGLKSLRLLSLHGNDI  114 (193)
T ss_dssp             CCBCCTTTT--TTCTTCCEEECCSSCC
T ss_pred             cCEeCHHHh--CCCCCCCEEECCCCCC
Confidence            444444556  8889999999998875

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=93.46  E-value=0.067  Score=37.89  Aligned_cols=15  Identities=20%  Similarity=0.228  Sum_probs=7.0

Q ss_pred             ccCccCCeEeCCCCC
Q 039136          115 HPFEELQRLDLSDKL  129 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~  129 (130)
                      ..+++|++|+|++|+
T Consensus       126 ~~l~~L~~L~L~~N~  140 (220)
T 2v70_A          126 IGLSSVRLLSLYDNQ  140 (220)
T ss_dssp             TTCTTCSEEECTTSC
T ss_pred             CCCccCCEEECCCCc
Confidence            444444444444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=93.41  E-value=0.036  Score=41.30  Aligned_cols=25  Identities=20%  Similarity=0.111  Sum_probs=20.4

Q ss_pred             cccccccccccccCccCCeEeCCCCCC
Q 039136          104 GVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      ++|.+|..+  ..+++|++|||++|++
T Consensus       256 l~~~~p~~l--~~l~~L~~L~Ls~N~l  280 (313)
T 1ogq_A          256 IYGTLPQGL--TQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             CEECCCGGG--GGCTTCCEEECCSSEE
T ss_pred             ccCcCChHH--hcCcCCCEEECcCCcc
Confidence            467888888  8888899999988864

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=93.39  E-value=0.043  Score=40.96  Aligned_cols=37  Identities=16%  Similarity=0.179  Sum_probs=27.4

Q ss_pred             CceEEEecCCCCCcccCCCCCCccccc--ccccccccccCccCCeEeCCCCCC
Q 039136           80 LRVTQLSLNQKTKINYSDYNSYSYGVS--FLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G--~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      ..+..|+|+++.   ++         +  .+|..+  ..+++|+.|||++|+|
T Consensus       170 ~~L~~L~Ls~N~---l~---------~l~~l~~~~--~~l~~L~~L~Ls~N~i  208 (267)
T 3rw6_A          170 PELLSLNLSNNR---LY---------RLDDMSSIV--QKAPNLKILNLSGNEL  208 (267)
T ss_dssp             TTCCEEECTTSC---CC---------CCGGGTTHH--HHSTTCCEEECTTSCC
T ss_pred             CCCCEEECCCCC---CC---------CCccchhHH--hhCCCCCEEECCCCcc
Confidence            468899999998   74         4  455555  6778888888888765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.31  E-value=0.11  Score=41.26  Aligned_cols=56  Identities=13%  Similarity=0.116  Sum_probs=33.4

Q ss_pred             CceEEecCCCCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCCeEeCCCCCC
Q 039136           70 WEGVKCNATTLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        70 W~GV~C~~~~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      +.++.|.. ...+..|++.++.   +++..               .++.+++.+|..+ +..+++|++|+|++|.+
T Consensus       111 l~~~~~~~-l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          111 ISRVSCSR-GQGKKNIYLANNK---ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             CCCEEECC-CSSCEEEECCSSC---CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECTTSCC
T ss_pred             CCCCCccc-cCCCCEEECCCCC---CCCCCchhhcCCCCCCEEECCCCCCCCcChHHH-hhhCCcccEEecCCCcc
Confidence            55555643 3567778887777   54320               1223556666665 12677788888877764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=93.13  E-value=0.091  Score=39.12  Aligned_cols=58  Identities=21%  Similarity=0.348  Sum_probs=37.0

Q ss_pred             CCCCceEEecCC---------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCCe
Q 039136           67 CNDWEGVKCNAT---------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQR  122 (130)
Q Consensus        67 C~~W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~~  122 (130)
                      |. |..+.|...         ...++.|++.++.   +++..               ..+.+++..|..+  +.+++|++
T Consensus        33 c~-l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~  106 (332)
T 2ft3_A           33 CH-LRVVQCSDLGLKAVPKEISPDTTLLDLQNND---ISELRKDDFKGLQHLYALVLVNNKISKIHEKAF--SPLRKLQK  106 (332)
T ss_dssp             EE-TTEEECCSSCCSSCCSCCCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCCEECGGGS--TTCTTCCE
T ss_pred             cc-CCEEECCCCCccccCCCCCCCCeEEECCCCc---CCccCHhHhhCCCCCcEEECCCCccCccCHhHh--hCcCCCCE
Confidence            67 899998642         1257788888777   53210               1122444556666  78888888


Q ss_pred             EeCCCCCC
Q 039136          123 LDLSDKLV  130 (130)
Q Consensus       123 LdLs~N~l  130 (130)
                      |+|++|++
T Consensus       107 L~L~~n~l  114 (332)
T 2ft3_A          107 LYISKNHL  114 (332)
T ss_dssp             EECCSSCC
T ss_pred             EECCCCcC
Confidence            88888764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=92.97  E-value=0.039  Score=36.28  Aligned_cols=18  Identities=33%  Similarity=0.385  Sum_probs=11.8

Q ss_pred             cccccccCccCCeEeCCCCC
Q 039136          110 MSLLFHPFEELQRLDLSDKL  129 (130)
Q Consensus       110 ~~l~~~~l~~L~~LdLs~N~  129 (130)
                      ..+  ..+++|++|++++|.
T Consensus       107 ~~~--~~l~~L~~L~l~~N~  124 (149)
T 2je0_A          107 EPL--KKLENLKSLDLFNCE  124 (149)
T ss_dssp             GGG--GGCTTCCEEECTTCG
T ss_pred             HHH--hhCCCCCEEeCcCCc
Confidence            455  666777777777665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=92.79  E-value=0.087  Score=37.46  Aligned_cols=22  Identities=18%  Similarity=0.262  Sum_probs=13.6

Q ss_pred             ccccccccccCccCCeEeCCCCCC
Q 039136          107 FLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       107 ~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .+|..+  ..+++|++|+|++|++
T Consensus       126 ~lp~~~--~~l~~L~~L~L~~N~l  147 (229)
T 3e6j_A          126 ELPRGI--ERLTHLTHLALDQNQL  147 (229)
T ss_dssp             SCCTTG--GGCTTCSEEECCSSCC
T ss_pred             ccCccc--ccCCCCCEEECCCCcC
Confidence            555555  5666666666666653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=92.71  E-value=0.099  Score=35.34  Aligned_cols=15  Identities=20%  Similarity=0.244  Sum_probs=9.1

Q ss_pred             ccCccCCeEeCCCCC
Q 039136          115 HPFEELQRLDLSDKL  129 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~  129 (130)
                      ..+++|++|+|++|.
T Consensus       121 ~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          121 DRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             cCCcccCEEEecCCC
Confidence            456666666666664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=92.67  E-value=0.095  Score=37.07  Aligned_cols=24  Identities=17%  Similarity=0.210  Sum_probs=16.9

Q ss_pred             ccccccccccccCccCCeEeCCCCCC
Q 039136          105 VSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       105 ~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      ++..|..+  ..+++|++|+|++|++
T Consensus        94 ~~~~~~~~--~~l~~L~~L~Ls~N~l  117 (220)
T 2v70_A           94 ENVQHKMF--KGLESLKTLMLRSNRI  117 (220)
T ss_dssp             CCCCGGGG--TTCSSCCEEECTTSCC
T ss_pred             CccCHhHh--cCCcCCCEEECCCCcC
Confidence            44444455  7888888888888865

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=92.51  E-value=0.13  Score=38.19  Aligned_cols=59  Identities=19%  Similarity=0.276  Sum_probs=38.0

Q ss_pred             CCCCCceEEecCC---------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCC
Q 039136           66 CCNDWEGVKCNAT---------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQ  121 (130)
Q Consensus        66 ~C~~W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~  121 (130)
                      .|. |..+.|...         ...++.+++.++.   +++..               .++.+++..|..+  +.+++|+
T Consensus        30 ~c~-l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~  103 (330)
T 1xku_A           30 QCH-LRVVQCSDLGLEKVPKDLPPDTALLDLQNNK---ITEIKDGDFKNLKNLHTLILINNKISKISPGAF--APLVKLE  103 (330)
T ss_dssp             EEE-TTEEECTTSCCCSCCCSCCTTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT--TTCTTCC
T ss_pred             cCC-CeEEEecCCCccccCccCCCCCeEEECCCCc---CCEeChhhhccCCCCCEEECCCCcCCeeCHHHh--cCCCCCC
Confidence            356 888888641         1356778888877   54320               1222445556667  7888888


Q ss_pred             eEeCCCCCC
Q 039136          122 RLDLSDKLV  130 (130)
Q Consensus       122 ~LdLs~N~l  130 (130)
                      +|+|++|++
T Consensus       104 ~L~Ls~n~l  112 (330)
T 1xku_A          104 RLYLSKNQL  112 (330)
T ss_dssp             EEECCSSCC
T ss_pred             EEECCCCcC
Confidence            888888864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=92.41  E-value=0.098  Score=41.69  Aligned_cols=16  Identities=31%  Similarity=0.297  Sum_probs=9.9

Q ss_pred             ccCccCCeEeCCCCCC
Q 039136          115 HPFEELQRLDLSDKLV  130 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~l  130 (130)
                      ..+++|++|||++|++
T Consensus       539 ~~l~~L~~L~Ls~N~l  554 (635)
T 4g8a_A          539 KCLNSLQVLDYSLNHI  554 (635)
T ss_dssp             TTCTTCCEEECTTSCC
T ss_pred             hCCCCCCEEECCCCcC
Confidence            5666666666666653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=92.22  E-value=0.076  Score=36.03  Aligned_cols=15  Identities=13%  Similarity=0.111  Sum_probs=8.1

Q ss_pred             ccCccCCeEeCCCCC
Q 039136          115 HPFEELQRLDLSDKL  129 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~  129 (130)
                      ..+++|++|++++|.
T Consensus       110 ~~l~~L~~L~l~~N~  124 (176)
T 1a9n_A          110 ASLKSLTYLCILRNP  124 (176)
T ss_dssp             GGCTTCCEEECCSSG
T ss_pred             hcCCCCCEEEecCCC
Confidence            455555555555553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=92.21  E-value=0.12  Score=38.85  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=18.1

Q ss_pred             cccccccccccccCccCCeEeCCCCCC
Q 039136          104 GVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      ..+.+|..+  +.+++|++|||++|++
T Consensus       265 ~~~~~p~~~--~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          265 NLLTLPLDI--HRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             TCCBCCTTG--GGCTTCCEEECTTCTT
T ss_pred             chhhcchhh--hcCCCCCEEeCCCCCc
Confidence            356777777  7778888888877753

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=92.19  E-value=0.12  Score=34.15  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=28.4

Q ss_pred             ceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136           81 RVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        81 rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .++.|+|+++.   +          -.+|... |..+++|++|+|++|.+
T Consensus        32 ~l~~L~Ls~N~---l----------~~l~~~~-f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNN---L----------TALPPGL-LDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSC---C----------SSCCTTT-GGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCc---C----------CccChhh-hhhccccCEEEecCCCe
Confidence            47788888888   7          3566654 48899999999999964

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=92.07  E-value=0.11  Score=41.38  Aligned_cols=45  Identities=13%  Similarity=0.119  Sum_probs=27.4

Q ss_pred             ceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCCeEeCCCCCC
Q 039136           81 RVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        81 rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .++.|+|+.+.   +++..               ..+.+++..|..+  .+|++|++|||++|++
T Consensus        53 ~~~~LdLs~N~---i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f--~~L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           53 STKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY--QSLSHLSTLILTGNPI  112 (635)
T ss_dssp             TCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEEECTTCCC
T ss_pred             CCCEEEeeCCC---CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHh--cCCCCCCEEEccCCcC
Confidence            57889999888   64321               1111333333345  7788888888888764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=92.05  E-value=0.1  Score=36.01  Aligned_cols=15  Identities=20%  Similarity=0.304  Sum_probs=7.7

Q ss_pred             ccCccCCeEeCCCCC
Q 039136          115 HPFEELQRLDLSDKL  129 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~  129 (130)
                      +.+++|++|+|++|.
T Consensus       133 ~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A          133 NTLPKVNSIDLSYNG  147 (197)
T ss_dssp             TTCSSCCEEECCSCT
T ss_pred             hhCCCCCEEEccCCC
Confidence            455555555555543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=92.02  E-value=0.17  Score=39.35  Aligned_cols=56  Identities=14%  Similarity=0.156  Sum_probs=33.0

Q ss_pred             CceEEecCC---------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCCeEeC
Q 039136           70 WEGVKCNAT---------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQRLDL  125 (130)
Q Consensus        70 W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~~LdL  125 (130)
                      |..+.|...         ...++.|+|.++.   +++..               ..+.+++..|..+  ..+++|++|+|
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L  130 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENN---IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF--NGLASLNTLEL  130 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEEC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCc---CceECHHHcCCCCCCCEEECCCCccCCcChhhc--cCcccCCEEEC
Confidence            567777542         1357788888877   54310               1122344444555  77777777777


Q ss_pred             CCCCC
Q 039136          126 SDKLV  130 (130)
Q Consensus       126 s~N~l  130 (130)
                      ++|++
T Consensus       131 ~~n~l  135 (452)
T 3zyi_A          131 FDNWL  135 (452)
T ss_dssp             CSSCC
T ss_pred             CCCcC
Confidence            77764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=92.01  E-value=0.16  Score=40.74  Aligned_cols=46  Identities=13%  Similarity=0.100  Sum_probs=29.2

Q ss_pred             CceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCCeEeCCCCCC
Q 039136           80 LRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        80 ~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .+++.|+++++.   +++..               .++.+++..|..+  +++++|++|||++|.+
T Consensus        32 ~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~--~~l~~L~~L~Ls~n~l   92 (606)
T 3vq2_A           32 SSTKNIDLSFNP---LKILKSYSFSNFSELQWLDLSRCEIETIEDKAW--HGLHHLSNLILTGNPI   92 (606)
T ss_dssp             TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEEECTTCCC
T ss_pred             CCcCEEECCCCC---cCEeChhhccCCccCcEEeCCCCcccccCHHHh--hchhhcCEeECCCCcc
Confidence            457788888877   54310               1122444455566  7888888888888864

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=91.93  E-value=0.023  Score=46.70  Aligned_cols=25  Identities=16%  Similarity=0.126  Sum_probs=19.1

Q ss_pred             CCCC-----CCCceE-EecCCCCceEEEecCCCC
Q 039136           64 SDCC-----NDWEGV-KCNATTLRVTQLSLNQKT   91 (130)
Q Consensus        64 ~~~C-----~~W~GV-~C~~~~~rV~~L~L~~~~   91 (130)
                      ..+|     . |.|+ .|..  .+++.|++.+++
T Consensus        40 ~~~~~~~~~~-~~~l~~C~~--~~L~~L~Ls~n~   70 (571)
T 3cvr_A           40 ALPGENRNEA-VSLLKECLI--NQFSELQLNRLN   70 (571)
T ss_dssp             CCTTCCHHHH-HHHHHHHHH--TTCSEEECCSSC
T ss_pred             CCccccccch-hhhcccccc--CCccEEEeCCCC
Confidence            4667     5 8898 6753  478899999888

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=91.78  E-value=0.14  Score=36.64  Aligned_cols=24  Identities=17%  Similarity=0.192  Sum_probs=17.3

Q ss_pred             ccccccccccccCccCCeEeCCCCCC
Q 039136          105 VSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       105 ~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      ++..+..+  ..+++|++|+|++|++
T Consensus        96 ~~~~~~~~--~~l~~L~~L~L~~N~l  119 (251)
T 3m19_A           96 ASLPLGVF--DHLTQLDKLYLGGNQL  119 (251)
T ss_dssp             CCCCTTTT--TTCTTCCEEECCSSCC
T ss_pred             cccChhHh--cccCCCCEEEcCCCcC
Confidence            43333445  7899999999999875

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=91.51  E-value=0.06  Score=36.09  Aligned_cols=15  Identities=33%  Similarity=0.321  Sum_probs=9.8

Q ss_pred             ccCccCCeEeCCCCC
Q 039136          115 HPFEELQRLDLSDKL  129 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~  129 (130)
                      ..+++|++|++++|.
T Consensus       117 ~~l~~L~~L~l~~N~  131 (168)
T 2ell_A          117 KKLECLKSLDLFNCE  131 (168)
T ss_dssp             SSCSCCCEEECCSSG
T ss_pred             hcCCCCCEEEeeCCc
Confidence            566666666666664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=91.40  E-value=0.14  Score=37.89  Aligned_cols=35  Identities=31%  Similarity=0.381  Sum_probs=20.5

Q ss_pred             ceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCC
Q 039136           81 RVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKL  129 (130)
Q Consensus        81 rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~  129 (130)
                      ++..|++.++.   +         ++..|..+  +.+++|++|||++|+
T Consensus       146 ~L~~L~Ls~n~---l---------~~~~~~~~--~~l~~L~~L~Ls~N~  180 (310)
T 4glp_A          146 GLKVLSIAQAH---S---------PAFSCEQV--RAFPALTSLDLSDNP  180 (310)
T ss_dssp             CCCEEEEECCS---S---------CCCCTTSC--CCCTTCCEEECCSCT
T ss_pred             CCCEEEeeCCC---c---------chhhHHHh--ccCCCCCEEECCCCC
Confidence            45566666665   4         34444445  666666666666665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=91.07  E-value=0.15  Score=40.12  Aligned_cols=36  Identities=19%  Similarity=0.182  Sum_probs=25.2

Q ss_pred             ceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136           81 RVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        81 rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      ++..|+++++.   +         ++..|..+  +.+++|++|||++|++
T Consensus        46 ~L~~L~Ls~n~---l---------~~~~~~~~--~~l~~L~~L~Ls~N~l   81 (520)
T 2z7x_B           46 KLRILIISHNR---I---------QYLDISVF--KFNQELEYLDLSHNKL   81 (520)
T ss_dssp             TCCEEECCSSC---C---------CEEEGGGG--TTCTTCCEEECCSSCC
T ss_pred             cccEEecCCCc---c---------CCcChHHh--hcccCCCEEecCCCce
Confidence            45555555555   4         46666677  8888888888888875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=90.97  E-value=0.2  Score=34.66  Aligned_cols=16  Identities=19%  Similarity=0.341  Sum_probs=10.6

Q ss_pred             ccCccCCeEeCCCCCC
Q 039136          115 HPFEELQRLDLSDKLV  130 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~l  130 (130)
                      ..+++|++|+|++|++
T Consensus       121 ~~l~~L~~L~l~~N~l  136 (208)
T 2o6s_A          121 DKLTQLKDLRLYQNQL  136 (208)
T ss_dssp             TTCTTCCEEECCSSCC
T ss_pred             ccCCcCCEEECCCCcc
Confidence            5666777777776653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=90.92  E-value=0.19  Score=37.23  Aligned_cols=20  Identities=20%  Similarity=0.273  Sum_probs=15.8

Q ss_pred             ccccccccccCccCCeEeCCCCCC
Q 039136          107 FLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       107 ~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .+|..+  .  ++|++|++++|.+
T Consensus       114 ~l~~~~--~--~~L~~L~l~~n~l  133 (330)
T 1xku_A          114 ELPEKM--P--KTLQELRVHENEI  133 (330)
T ss_dssp             BCCSSC--C--TTCCEEECCSSCC
T ss_pred             ccChhh--c--ccccEEECCCCcc
Confidence            567666  3  7999999999975

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=90.84  E-value=0.2  Score=36.13  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=17.8

Q ss_pred             ccccccccccCccCCeEeCCCCCC
Q 039136          107 FLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       107 ~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .+|..+  +.+++|++|+|++|++
T Consensus       140 ~l~~~~--~~l~~L~~L~Ls~N~l  161 (276)
T 2z62_A          140 KLPEYF--SNLTNLEHLDLSSNKI  161 (276)
T ss_dssp             CCCGGG--GGCTTCCEEECCSSCC
T ss_pred             cCchhh--ccCCCCCEEECCCCCC
Confidence            467777  8889999999998864

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=90.83  E-value=0.18  Score=38.18  Aligned_cols=16  Identities=38%  Similarity=0.540  Sum_probs=9.2

Q ss_pred             ccCccCCeEeCCCCCC
Q 039136          115 HPFEELQRLDLSDKLV  130 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~l  130 (130)
                      ..+++|++|||++|+|
T Consensus        85 ~~l~~L~~L~Ls~N~l  100 (361)
T 2xot_A           85 VPVPNLRYLDLSSNHL  100 (361)
T ss_dssp             TTCTTCCEEECCSSCC
T ss_pred             cCCCCCCEEECCCCcC
Confidence            5556666666665543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.76  E-value=0.18  Score=40.11  Aligned_cols=15  Identities=27%  Similarity=0.552  Sum_probs=8.8

Q ss_pred             ccCccCCeEeCCCCC
Q 039136          115 HPFEELQRLDLSDKL  129 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~  129 (130)
                      +.+++|++|||++|.
T Consensus        77 ~~l~~L~~L~Ls~N~   91 (487)
T 3oja_A           77 ESLSTLRTLDLNNNY   91 (487)
T ss_dssp             TTCTTCCEEECCSSE
T ss_pred             ccCCCCCEEEecCCc
Confidence            555666666666554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=90.67  E-value=0.29  Score=38.14  Aligned_cols=56  Identities=14%  Similarity=0.153  Sum_probs=33.8

Q ss_pred             CceEEecCC---------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCCeEeC
Q 039136           70 WEGVKCNAT---------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQRLDL  125 (130)
Q Consensus        70 W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~~LdL  125 (130)
                      |..|.|...         ...+..|++.++.   +++..               ..+.+++..|..+  .++++|++|+|
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~L   87 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNR---IKTLNQDEFASFPHLEELELNENIVSAVEPGAF--NNLFNLRTLGL   87 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSC---CCEECTTTTTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEEC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCc---cceECHhHccCCCCCCEEECCCCccCEeChhhh--hCCccCCEEEC
Confidence            567777541         1246677777776   53310               1122445556666  78888888888


Q ss_pred             CCCCC
Q 039136          126 SDKLV  130 (130)
Q Consensus       126 s~N~l  130 (130)
                      ++|++
T Consensus        88 ~~n~l   92 (477)
T 2id5_A           88 RSNRL   92 (477)
T ss_dssp             CSSCC
T ss_pred             CCCcC
Confidence            88764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=90.61  E-value=0.17  Score=34.23  Aligned_cols=37  Identities=19%  Similarity=0.262  Sum_probs=24.2

Q ss_pred             CceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136           80 LRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .++..++++++.   +         + .+|+.+ |..+++|++|+|++|++
T Consensus        64 ~~L~~L~Ls~N~---l---------~-~~~~~~-~~~l~~L~~L~L~~N~i  100 (176)
T 1a9n_A           64 RRLKTLLVNNNR---I---------C-RIGEGL-DQALPDLTELILTNNSL  100 (176)
T ss_dssp             SSCCEEECCSSC---C---------C-EECSCH-HHHCTTCCEEECCSCCC
T ss_pred             CCCCEEECCCCc---c---------c-ccCcch-hhcCCCCCEEECCCCcC
Confidence            356677777776   5         2 345443 36778888888888764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=90.61  E-value=0.17  Score=37.45  Aligned_cols=22  Identities=36%  Similarity=0.477  Sum_probs=12.8

Q ss_pred             cccccccccccCccCCeEeCCCCC
Q 039136          106 SFLNMSLLFHPFEELQRLDLSDKL  129 (130)
Q Consensus       106 G~ip~~l~~~~l~~L~~LdLs~N~  129 (130)
                      +..|..+  +.+++|++|||++|+
T Consensus       163 ~~~~~~~--~~l~~L~~L~Ls~N~  184 (312)
T 1wwl_A          163 NFSCEQV--RVFPALSTLDLSDNP  184 (312)
T ss_dssp             CCCTTTC--CCCSSCCEEECCSCT
T ss_pred             cchHHHh--ccCCCCCEEECCCCC
Confidence            3333455  666666666666665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=90.59  E-value=0.21  Score=37.14  Aligned_cols=20  Identities=20%  Similarity=0.258  Sum_probs=16.1

Q ss_pred             ccccccccccCccCCeEeCCCCCC
Q 039136          107 FLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       107 ~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .+|..+  .  ++|++|++++|++
T Consensus       116 ~l~~~~--~--~~L~~L~l~~n~i  135 (332)
T 2ft3_A          116 EIPPNL--P--SSLVELRIHDNRI  135 (332)
T ss_dssp             SCCSSC--C--TTCCEEECCSSCC
T ss_pred             ccCccc--c--ccCCEEECCCCcc
Confidence            677776  3  8999999999975

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=90.50  E-value=0.16  Score=41.66  Aligned_cols=36  Identities=14%  Similarity=0.169  Sum_probs=25.7

Q ss_pred             CceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCC
Q 039136           80 LRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKL  129 (130)
Q Consensus        80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~  129 (130)
                      .++..|++.++.   +         .|.+|..+  +++++|++|||++|+
T Consensus       249 ~~L~~L~L~~n~---l---------~~~~p~~l--~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          249 KDLTDVEVYNCP---N---------LTKLPTFL--KALPEMQLINVACNR  284 (636)
T ss_dssp             TTCCEEEEECCT---T---------CSSCCTTT--TTCSSCCEEECTTCT
T ss_pred             CCCCEEEecCCc---C---------CccChHHH--hcCCCCCEEECcCCC
Confidence            356777777777   5         47777776  777777777777775

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=90.31  E-value=0.23  Score=36.03  Aligned_cols=24  Identities=13%  Similarity=0.072  Sum_probs=13.2

Q ss_pred             ccccccccccccCccCCeEeCCCCCC
Q 039136          105 VSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       105 ~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      ++..|..+  ..+++|++|||++|++
T Consensus       190 ~~~~~~~~--~~l~~L~~L~l~~n~l  213 (285)
T 1ozn_A          190 AHVHPHAF--RDLGRLMTLYLFANNL  213 (285)
T ss_dssp             CEECTTTT--TTCTTCCEEECCSSCC
T ss_pred             cccCHhHc--cCcccccEeeCCCCcC
Confidence            34445555  5566666666666543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=90.31  E-value=0.2  Score=40.77  Aligned_cols=20  Identities=20%  Similarity=0.338  Sum_probs=13.1

Q ss_pred             cccccccccCccCCeEeCCCCCC
Q 039136          108 LNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       108 ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      +| .+  +.+++|++|+|++|+|
T Consensus       501 lp-~l--~~l~~L~~L~Ls~N~l  520 (567)
T 1dce_A          501 VD-GV--ANLPRLQELLLCNNRL  520 (567)
T ss_dssp             CG-GG--TTCSSCCEEECCSSCC
T ss_pred             Cc-cc--CCCCCCcEEECCCCCC
Confidence            45 55  6677777777777654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=90.25  E-value=0.22  Score=39.78  Aligned_cols=24  Identities=21%  Similarity=0.110  Sum_probs=17.9

Q ss_pred             ccccccccccccCccCCeEeCCCCCC
Q 039136          105 VSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       105 ~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      ++..|..+  +.+++|++|||++|++
T Consensus        89 ~~~~~~~~--~~l~~L~~L~Ls~N~l  112 (562)
T 3a79_B           89 RSLDFHVF--LFNQDLEYLDVSHNRL  112 (562)
T ss_dssp             CEECTTTT--TTCTTCCEEECTTSCC
T ss_pred             CcCCHHHh--CCCCCCCEEECCCCcC
Confidence            45556666  7888888888888865

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=89.98  E-value=0.14  Score=38.06  Aligned_cols=15  Identities=27%  Similarity=0.552  Sum_probs=11.3

Q ss_pred             ccCccCCeEeCCCCC
Q 039136          115 HPFEELQRLDLSDKL  129 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~  129 (130)
                      ..+++|++|||++|+
T Consensus        77 ~~l~~L~~L~Ls~n~   91 (317)
T 3o53_A           77 ESLSTLRTLDLNNNY   91 (317)
T ss_dssp             TTCTTCCEEECCSSE
T ss_pred             hhcCCCCEEECcCCc
Confidence            677777777777775

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=89.89  E-value=0.25  Score=37.02  Aligned_cols=22  Identities=27%  Similarity=0.329  Sum_probs=18.0

Q ss_pred             ccccc-cccccCccCCeEeCCCCCC
Q 039136          107 FLNMS-LLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       107 ~ip~~-l~~~~l~~L~~LdLs~N~l  130 (130)
                      .+|+. +  ..+++|++|+|++|++
T Consensus       114 ~~~~~~~--~~l~~L~~L~L~~n~l  136 (353)
T 2z80_A          114 NLSSSWF--KPLSSLTFLNLLGNPY  136 (353)
T ss_dssp             SCCHHHH--TTCTTCSEEECTTCCC
T ss_pred             cCCHhHh--CCCccCCEEECCCCCC
Confidence            45554 6  8999999999999975

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=89.87  E-value=0.26  Score=36.05  Aligned_cols=15  Identities=33%  Similarity=0.248  Sum_probs=7.6

Q ss_pred             ccCccCCeEeCCCCC
Q 039136          115 HPFEELQRLDLSDKL  129 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~  129 (130)
                      ..+++|++|||++|+
T Consensus       220 ~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          220 KCLNSLQVLDYSLNH  234 (306)
T ss_dssp             TTCTTCCEEECTTSC
T ss_pred             cCcccCCEeECCCCC
Confidence            445555555555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=89.84  E-value=0.24  Score=38.10  Aligned_cols=23  Identities=17%  Similarity=0.209  Sum_probs=12.1

Q ss_pred             ccccccccccccCccCCeEeCCCCC
Q 039136          105 VSFLNMSLLFHPFEELQRLDLSDKL  129 (130)
Q Consensus       105 ~G~ip~~l~~~~l~~L~~LdLs~N~  129 (130)
                      ++..|..+  ..+++|++|||++|+
T Consensus       360 ~~~~~~~~--~~l~~L~~L~L~~N~  382 (455)
T 3v47_A          360 RALGDQSF--LGLPNLKELALDTNQ  382 (455)
T ss_dssp             CEECTTTT--TTCTTCCEEECCSSC
T ss_pred             cccChhhc--cccccccEEECCCCc
Confidence            34444444  555555555555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=89.74  E-value=0.19  Score=42.11  Aligned_cols=45  Identities=13%  Similarity=0.099  Sum_probs=28.2

Q ss_pred             CceEEEecCCCCCcccCCC-------------C-CCcccccccccccccccCccCCeEeCCCCCC
Q 039136           80 LRVTQLSLNQKTKINYSDY-------------N-SYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        80 ~rV~~L~L~~~~~~~l~~~-------------~-~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      ..+..|+|+++.   ++..             . .++.+ +.||..+  +.|++|++|+|++|.|
T Consensus       270 ~~L~~L~Ls~N~---l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~--~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          270 SNLRVLDLSHNR---LTSLPAELGSCFQLKYFYFFDNMV-TTLPWEF--GNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             TTCCEEECTTSC---CSSCCSSGGGGTTCSEEECCSSCC-CCCCSST--TSCTTCCCEECTTSCC
T ss_pred             CCCCEEeCcCCc---CCccChhhcCCCCCCEEECCCCCC-CccChhh--hcCCCccEEeCCCCcc
Confidence            357788888877   5321             0 11212 3677776  7777888888877764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=89.62  E-value=0.23  Score=41.62  Aligned_cols=22  Identities=23%  Similarity=0.208  Sum_probs=13.4

Q ss_pred             ccccccccccCccCCeEeCCCCCC
Q 039136          107 FLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       107 ~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .+|..+  +.|++|++|+|++|.|
T Consensus       284 ~lp~~~--~~l~~L~~L~L~~N~l  305 (727)
T 4b8c_D          284 SLPAEL--GSCFQLKYFYFFDNMV  305 (727)
T ss_dssp             SCCSSG--GGGTTCSEEECCSSCC
T ss_pred             ccChhh--cCCCCCCEEECCCCCC
Confidence            556565  6666666666666653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=89.46  E-value=0.31  Score=35.11  Aligned_cols=23  Identities=13%  Similarity=0.221  Sum_probs=15.8

Q ss_pred             cccccccccccCccCCeEeCCCCCC
Q 039136          106 SFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       106 G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      +..+..+  ..+++|++|+|++|.+
T Consensus        66 ~~~~~~~--~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           66 TIEDGAY--QSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EECTTTT--TTCTTCCEEECTTCCC
T ss_pred             ccCHHHc--cCCcCCCEEECCCCcc
Confidence            3333455  7788888888888864

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=89.41  E-value=0.55  Score=34.48  Aligned_cols=16  Identities=31%  Similarity=0.337  Sum_probs=11.9

Q ss_pred             ccCccCCeEeCCCCCC
Q 039136          115 HPFEELQRLDLSDKLV  130 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~l  130 (130)
                      ..+++|++|+|++|++
T Consensus       121 ~~l~~L~~L~L~~N~l  136 (290)
T 1p9a_G          121 RGLGELQELYLKGNEL  136 (290)
T ss_dssp             TTCTTCCEEECTTSCC
T ss_pred             cCCCCCCEEECCCCCC
Confidence            7777777777777764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=89.26  E-value=0.28  Score=38.73  Aligned_cols=25  Identities=20%  Similarity=0.182  Sum_probs=20.1

Q ss_pred             cccccccccccccCccCCeEeCCCCCC
Q 039136          104 GVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      +++..|..+  +.+++|++|||++|++
T Consensus        86 l~~~~~~~~--~~l~~L~~L~Ls~n~l  110 (549)
T 2z81_A           86 LSSLSSSWF--GPLSSLKYLNLMGNPY  110 (549)
T ss_dssp             CCSCCHHHH--TTCTTCCEEECTTCCC
T ss_pred             cCccCHHHh--ccCCCCcEEECCCCcc
Confidence            455555567  9999999999999975

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=89.15  E-value=0.36  Score=37.93  Aligned_cols=21  Identities=24%  Similarity=0.295  Sum_probs=11.3

Q ss_pred             ccccccccccCccCCeEeCCCCC
Q 039136          107 FLNMSLLFHPFEELQRLDLSDKL  129 (130)
Q Consensus       107 ~ip~~l~~~~l~~L~~LdLs~N~  129 (130)
                      .+|..+  +.+++|++|||++|+
T Consensus       365 ~~~~~~--~~l~~L~~L~Ls~N~  385 (520)
T 2z7x_B          365 KIAEMT--TQMKSLQQLDISQNS  385 (520)
T ss_dssp             HHHHHH--TTCTTCCEEECCSSC
T ss_pred             cchHHH--hhCCCCCEEECCCCc
Confidence            334444  555566666665554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=89.13  E-value=0.28  Score=39.26  Aligned_cols=25  Identities=16%  Similarity=0.042  Sum_probs=16.3

Q ss_pred             cccccccccccccCccCCeEeCCCCCC
Q 039136          104 GVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      +++.+|..+  +.+++|++|||++|++
T Consensus       509 l~~~~~~~~--~~l~~L~~L~l~~N~l  533 (606)
T 3vq2_A          509 LLFLDSSHY--NQLYSLSTLDCSFNRI  533 (606)
T ss_dssp             CSCEEGGGT--TTCTTCCEEECTTSCC
T ss_pred             CCCcCHHHc--cCCCcCCEEECCCCcC
Confidence            445556666  6677777777777754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=88.80  E-value=0.24  Score=34.07  Aligned_cols=15  Identities=27%  Similarity=0.337  Sum_probs=7.2

Q ss_pred             ccCccCCeEeCCCCC
Q 039136          115 HPFEELQRLDLSDKL  129 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~  129 (130)
                      +.+++|++|+|++|+
T Consensus       109 ~~l~~L~~L~Ls~n~  123 (197)
T 4ezg_A          109 SGLTSLTLLDISHSA  123 (197)
T ss_dssp             TTCTTCCEEECCSSB
T ss_pred             cCCCCCCEEEecCCc
Confidence            444444444444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=88.74  E-value=0.36  Score=34.92  Aligned_cols=15  Identities=33%  Similarity=0.408  Sum_probs=7.0

Q ss_pred             ccCccCCeEeCCCCC
Q 039136          115 HPFEELQRLDLSDKL  129 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~  129 (130)
                      +.+++|++|++++|+
T Consensus       154 ~~l~~L~~L~l~~n~  168 (272)
T 3rfs_A          154 DKLTNLTELDLSYNQ  168 (272)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             ccCccCCEEECCCCC
Confidence            444444444444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=88.74  E-value=0.36  Score=34.91  Aligned_cols=16  Identities=19%  Similarity=0.366  Sum_probs=10.5

Q ss_pred             ccCccCCeEeCCCCCC
Q 039136          115 HPFEELQRLDLSDKLV  130 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~l  130 (130)
                      +.+++|++|+|++|++
T Consensus       130 ~~l~~L~~L~L~~n~l  145 (272)
T 3rfs_A          130 DKLTNLTYLNLAHNQL  145 (272)
T ss_dssp             TTCTTCCEEECCSSCC
T ss_pred             ccCCCCCEEECCCCcc
Confidence            6666677777766653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=88.68  E-value=0.36  Score=35.50  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=16.6

Q ss_pred             ccccccccccCccCCeEeCCCCCC
Q 039136          107 FLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       107 ~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .+|+.. |..+++|+.|+|++|++
T Consensus       138 ~~~~~~-~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G          138 TLPPGL-LTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             CCCTTT-TTTCTTCCEEECTTSCC
T ss_pred             ccChhh-cccccCCCEEECCCCcC
Confidence            344443 37888999999998875

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=88.60  E-value=0.23  Score=36.63  Aligned_cols=24  Identities=25%  Similarity=0.112  Sum_probs=13.4

Q ss_pred             ccccccccccccC---ccCCeEeCCCCCC
Q 039136          105 VSFLNMSLLFHPF---EELQRLDLSDKLV  130 (130)
Q Consensus       105 ~G~ip~~l~~~~l---~~L~~LdLs~N~l  130 (130)
                      ++.+|+.+  ..+   ++|++|+|++|++
T Consensus       237 ~~~~p~~~--~~~~~~~~L~~L~Ls~N~l  263 (310)
T 4glp_A          237 RATVNPSA--PRCMWSSALNSLNLSFAGL  263 (310)
T ss_dssp             CCCCCSCC--SSCCCCTTCCCEECCSSCC
T ss_pred             CccchhhH--HhccCcCcCCEEECCCCCC
Confidence            44445554  444   4666666666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=88.57  E-value=0.37  Score=34.84  Aligned_cols=15  Identities=20%  Similarity=0.193  Sum_probs=8.6

Q ss_pred             ccCccCCeEeCCCCC
Q 039136          115 HPFEELQRLDLSDKL  129 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~  129 (130)
                      ..+++|++|+|++|+
T Consensus       150 ~~l~~L~~L~l~~n~  164 (285)
T 1ozn_A          150 RDLGNLTHLFLHGNR  164 (285)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             ccCCCccEEECCCCc
Confidence            555555555555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=88.55  E-value=0.35  Score=38.73  Aligned_cols=45  Identities=9%  Similarity=0.031  Sum_probs=27.1

Q ss_pred             ceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCCeEeCCCCCC
Q 039136           81 RVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        81 rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .++.++++++.   +++..               ..+.+++..|..+  +++++|++|||++|++
T Consensus        34 ~l~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n~l   93 (606)
T 3t6q_A           34 STECLEFSFNV---LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTF--QSQHRLDTLVLTANPL   93 (606)
T ss_dssp             TCCEEECTTCC---CSEECTTTSTTCTTCSEEECTTCCCCEECTTTT--TTCTTCCEEECTTCCC
T ss_pred             cCcEEEccCCc---cCcCChhHhccCccceEEECCCCccceeChhhc--cCccccCeeeCCCCcc
Confidence            56777887776   53210               1112345555666  7777888888877764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=88.51  E-value=0.42  Score=35.93  Aligned_cols=25  Identities=24%  Similarity=0.242  Sum_probs=20.8

Q ss_pred             ccccccccccccCccCCeEeCCCCCC
Q 039136          105 VSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       105 ~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      -+.||+.. |..+++|++|||++|+|
T Consensus       190 l~~i~~~~-f~~l~~L~~LdLs~N~l  214 (350)
T 4ay9_X          190 LEELPNDV-FHGASGPVILDISRTRI  214 (350)
T ss_dssp             CCCCCTTT-TTTEECCSEEECTTSCC
T ss_pred             ccCCCHHH-hccCcccchhhcCCCCc
Confidence            46788764 58999999999999985

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=88.48  E-value=0.46  Score=33.49  Aligned_cols=11  Identities=18%  Similarity=0.202  Sum_probs=8.3

Q ss_pred             ceEEEecCCCC
Q 039136           81 RVTQLSLNQKT   91 (130)
Q Consensus        81 rV~~L~L~~~~   91 (130)
                      .++.+++.++.
T Consensus        32 ~l~~L~l~~n~   42 (239)
T 2xwt_C           32 STQTLKLIETH   42 (239)
T ss_dssp             TCCEEEEESCC
T ss_pred             cccEEEEeCCc
Confidence            57778887777

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=88.47  E-value=0.42  Score=38.15  Aligned_cols=21  Identities=19%  Similarity=0.287  Sum_probs=12.5

Q ss_pred             cccccccccCccCCeEeCCCCCC
Q 039136          108 LNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       108 ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      +|..+  ..+++|++|||++|++
T Consensus       395 ~~~~~--~~l~~L~~L~l~~N~l  415 (562)
T 3a79_B          395 VALMT--KNMSSLETLDVSLNSL  415 (562)
T ss_dssp             HHHTT--TTCTTCCEEECTTSCC
T ss_pred             chhhh--cCCCCCCEEECCCCcC
Confidence            33445  6666666666666653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=88.39  E-value=0.38  Score=36.35  Aligned_cols=15  Identities=33%  Similarity=0.443  Sum_probs=7.9

Q ss_pred             ccCccCCeEeCCCCC
Q 039136          115 HPFEELQRLDLSDKL  129 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~  129 (130)
                      ..+++|++|+|++|+
T Consensus       133 ~~l~~L~~L~L~~N~  147 (361)
T 2xot_A          133 EDMAQLQKLYLSQNQ  147 (361)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             CCcccCCEEECCCCc
Confidence            455555555555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=88.38  E-value=0.35  Score=37.59  Aligned_cols=23  Identities=22%  Similarity=0.609  Sum_probs=18.1

Q ss_pred             ccccccccccCccCCeEeCCCCCC
Q 039136          107 FLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       107 ~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .+|+.. |.++++|++|||++|++
T Consensus        94 ~~~~~~-~~~l~~L~~L~Ls~n~i  116 (477)
T 2id5_A           94 LIPLGV-FTGLSNLTKLDISENKI  116 (477)
T ss_dssp             SCCTTS-STTCTTCCEEECTTSCC
T ss_pred             ccCccc-ccCCCCCCEEECCCCcc
Confidence            455543 38999999999999975

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=88.28  E-value=0.78  Score=33.86  Aligned_cols=15  Identities=20%  Similarity=0.445  Sum_probs=9.3

Q ss_pred             cCccCCeEeCCCCCC
Q 039136          116 PFEELQRLDLSDKLV  130 (130)
Q Consensus       116 ~l~~L~~LdLs~N~l  130 (130)
                      .+++|++|+|++|++
T Consensus       167 ~l~~L~~L~L~~N~l  181 (317)
T 3o53_A          167 SSDTLEHLNLQYNFI  181 (317)
T ss_dssp             GTTTCCEEECTTSCC
T ss_pred             ccCcCCEEECCCCcC
Confidence            466666666666653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=88.06  E-value=0.38  Score=37.36  Aligned_cols=22  Identities=14%  Similarity=0.255  Sum_probs=17.8

Q ss_pred             cccc-ccccccCccCCeEeCCCCCC
Q 039136          107 FLNM-SLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       107 ~ip~-~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .+|+ .+  ..+++|++|+|++|++
T Consensus       137 ~~~~~~~--~~l~~L~~L~L~~N~l  159 (452)
T 3zyi_A          137 VIPSGAF--EYLSKLRELWLRNNPI  159 (452)
T ss_dssp             BCCTTTS--SSCTTCCEEECCSCCC
T ss_pred             ccChhhh--cccCCCCEEECCCCCc
Confidence            4444 45  8899999999999975

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=87.99  E-value=0.29  Score=39.91  Aligned_cols=46  Identities=11%  Similarity=0.024  Sum_probs=32.7

Q ss_pred             CceEEEecCCCCCcccCCCC-------------CCccccccc-ccccccccCccCCeEeCCCCCC
Q 039136           80 LRVTQLSLNQKTKINYSDYN-------------SYSYGVSFL-NMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        80 ~rV~~L~L~~~~~~~l~~~~-------------~~~~~~G~i-p~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .++..|+|+++.   +++..             .++.+++.+ |..+  +.+++|+.|+|++|.|
T Consensus       486 ~~L~~L~Ls~N~---l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l--~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          486 RCLEVLQASDNA---LENVDGVANLPRLQELLLCNNRLQQSAAIQPL--VSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             TTCCEEECCSSC---CCCCGGGTTCSSCCEEECCSSCCCSSSTTGGG--GGCTTCCEEECTTSGG
T ss_pred             CCCCEEECCCCC---CCCCcccCCCCCCcEEECCCCCCCCCCCcHHH--hcCCCCCEEEecCCcC
Confidence            356777777776   54421             223356665 8888  9999999999999975

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=87.85  E-value=0.55  Score=38.19  Aligned_cols=46  Identities=13%  Similarity=0.140  Sum_probs=27.5

Q ss_pred             CceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCCeEeCCCCCC
Q 039136           80 LRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        80 ~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .+++.|+++++.   +++..               .++.+++..|..+  +++++|++|||++|++
T Consensus        25 ~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l   85 (680)
T 1ziw_A           25 TNITVLNLTHNQ---LRRLPAANFTRYSQLTSLDVGFNTISKLEPELC--QKLPMLKVLNLQHNEL   85 (680)
T ss_dssp             TTCSEEECCSSC---CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHH--HHCTTCCEEECCSSCC
T ss_pred             CCCcEEECCCCC---CCCcCHHHHhCCCcCcEEECCCCccCccCHHHH--hcccCcCEEECCCCcc
Confidence            357777777776   53310               1122345555556  7777788888777754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=87.80  E-value=0.45  Score=34.28  Aligned_cols=15  Identities=20%  Similarity=0.335  Sum_probs=7.7

Q ss_pred             ccCccCCeEeCCCCC
Q 039136          115 HPFEELQRLDLSDKL  129 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~  129 (130)
                      ..+++|++|+|++|+
T Consensus       154 ~~l~~L~~L~L~~n~  168 (270)
T 2o6q_A          154 DKLTSLKELRLYNNQ  168 (270)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             cCCcccceeEecCCc
Confidence            445555555555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=87.70  E-value=0.42  Score=34.61  Aligned_cols=35  Identities=20%  Similarity=0.365  Sum_probs=22.4

Q ss_pred             CceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136           80 LRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      ..+..|++.++.   ++         + +|+ +  ..+++|++|+|++|++
T Consensus        63 ~~L~~L~L~~N~---i~---------~-~~~-l--~~l~~L~~L~L~~N~l   97 (263)
T 1xeu_A           63 TNLKELHLSHNQ---IS---------D-LSP-L--KDLTKLEELSVNRNRL   97 (263)
T ss_dssp             TTCCEEECCSSC---CC---------C-CGG-G--TTCSSCCEEECCSSCC
T ss_pred             CCCCEEECCCCc---cC---------C-Chh-h--ccCCCCCEEECCCCcc
Confidence            357777777777   52         2 333 5  6777777777777754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=87.57  E-value=0.32  Score=41.07  Aligned_cols=54  Identities=15%  Similarity=0.141  Sum_probs=34.3

Q ss_pred             CceEEecCCCCceEEEecCCCCCcccCCCC---------------CCcccccccc-cccccccCccCCeEeCCCCCC
Q 039136           70 WEGVKCNATTLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLN-MSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        70 W~GV~C~~~~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip-~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      |..|.+ . ..+++.|+|+.+.   +++..               ..+...+.++ ..+  +++++|++|+|++|.+
T Consensus        16 L~~vP~-l-p~~l~~LdLs~N~---i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f--~~L~~L~~L~Ls~N~l   85 (844)
T 3j0a_A           16 LTQVPQ-V-LNTTERLLLSFNY---IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF--RNLPNLRILDLGSSKI   85 (844)
T ss_dssp             SSCCCS-S-CTTCCEEEEESCC---CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTT--SSCTTCCEEECTTCCC
T ss_pred             CCCCCC-C-CCCcCEEECCCCc---CCccChhHCcccccCeEEeCCCCCCccccCHHHh--cCCCCCCEEECCCCcC
Confidence            666665 2 3567788887776   54310               1111346664 456  8899999999998875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=87.50  E-value=0.4  Score=36.33  Aligned_cols=24  Identities=17%  Similarity=0.307  Sum_probs=14.1

Q ss_pred             ccccccccccccCccCCeEeCCCCCC
Q 039136          105 VSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       105 ~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      ++..|..+  ..+++|++|+|++|++
T Consensus       261 ~~~~~~~~--~~l~~L~~L~L~~n~l  284 (390)
T 3o6n_A          261 EKIMYHPF--VKMQRLERLYISNNRL  284 (390)
T ss_dssp             CEEESGGG--TTCSSCCEEECCSSCC
T ss_pred             CCcChhHc--cccccCCEEECCCCcC
Confidence            44445555  6666666666666653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=87.40  E-value=0.46  Score=36.77  Aligned_cols=16  Identities=13%  Similarity=0.343  Sum_probs=9.7

Q ss_pred             ccCccCCeEeCCCCCC
Q 039136          115 HPFEELQRLDLSDKLV  130 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~l  130 (130)
                      ..+++|++|||++|++
T Consensus       252 ~~l~~L~~L~L~~N~l  267 (440)
T 3zyj_A          252 DNLQSLVEINLAHNNL  267 (440)
T ss_dssp             TTCTTCCEEECTTSCC
T ss_pred             cCCCCCCEEECCCCCC
Confidence            5566666666666653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=87.34  E-value=0.47  Score=35.94  Aligned_cols=15  Identities=27%  Similarity=0.377  Sum_probs=7.9

Q ss_pred             ccCccCCeEeCCCCC
Q 039136          115 HPFEELQRLDLSDKL  129 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~  129 (130)
                      ..+++|++|++++|.
T Consensus       138 ~~l~~L~~L~L~~n~  152 (390)
T 3o6n_A          138 HNTPKLTTLSMSNNN  152 (390)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             cCCCCCcEEECCCCc
Confidence            445555555555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=87.22  E-value=0.34  Score=41.74  Aligned_cols=36  Identities=22%  Similarity=0.187  Sum_probs=25.5

Q ss_pred             CceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCC
Q 039136           80 LRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKL  129 (130)
Q Consensus        80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~  129 (130)
                      .++..|+|.++.   +         .|.+|..+  ++|++|++|+|++|+
T Consensus       491 ~~L~~L~Ls~N~---l---------~~~iP~~l--~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          491 KDLTDVELYNCP---N---------MTQLPDFL--YDLPELQSLNIACNR  526 (876)
T ss_dssp             TTCCEEEEESCT---T---------CCSCCGGG--GGCSSCCEEECTTCT
T ss_pred             CCCCEEECcCCC---C---------CccChHHH--hCCCCCCEEECcCCC
Confidence            356777777776   5         57777777  777777777777775

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=87.21  E-value=0.47  Score=37.96  Aligned_cols=24  Identities=17%  Similarity=0.274  Sum_probs=14.9

Q ss_pred             ccccccccccccCccCCeEeCCCCCC
Q 039136          105 VSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       105 ~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      ++..|..+  +.+++|++|||++|++
T Consensus       489 ~~~~~~~~--~~l~~L~~L~Ls~N~l  512 (606)
T 3t6q_A          489 SSIDQHAF--TSLKMMNHVDLSHNRL  512 (606)
T ss_dssp             CEECTTTT--TTCTTCCEEECCSSCC
T ss_pred             CccChhhh--ccccCCCEEECCCCcc
Confidence            44555555  6677777777776654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=86.69  E-value=0.79  Score=32.21  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=16.6

Q ss_pred             ccccccccccC-ccCCeEeCCCCCC
Q 039136          107 FLNMSLLFHPF-EELQRLDLSDKLV  130 (130)
Q Consensus       107 ~ip~~l~~~~l-~~L~~LdLs~N~l  130 (130)
                      .+|+.. |..+ ++|++||+++|++
T Consensus       194 ~i~~~~-~~~l~~~L~~L~l~~N~l  217 (239)
T 2xwt_C          194 VIDKDA-FGGVYSGPSLLDVSQTSV  217 (239)
T ss_dssp             EECTTT-TTTCSBCCSEEECTTCCC
T ss_pred             cCCHHH-hhccccCCcEEECCCCcc
Confidence            444432 3788 8999999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=86.53  E-value=0.48  Score=38.31  Aligned_cols=25  Identities=16%  Similarity=0.236  Sum_probs=16.1

Q ss_pred             cccccccccccccCccCCeEeCCCCCC
Q 039136          104 GVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      +++.+|..+  +.+++|++|+|++|.+
T Consensus       266 l~~~~~~~~--~~l~~L~~L~Ls~N~l  290 (597)
T 3oja_B          266 LEKIMYHPF--VKMQRLERLYISNNRL  290 (597)
T ss_dssp             CCEEESGGG--TTCSSCCEEECTTSCC
T ss_pred             cCCCCHHHh--cCccCCCEEECCCCCC
Confidence            455556666  6677777777776654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=86.37  E-value=0.53  Score=37.15  Aligned_cols=15  Identities=20%  Similarity=0.244  Sum_probs=6.8

Q ss_pred             ccCccCCeEeCCCCC
Q 039136          115 HPFEELQRLDLSDKL  129 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~  129 (130)
                      .++++|++|++++|.
T Consensus       515 ~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          515 DRLTSLQKIWLHTNP  529 (570)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             hcccCCcEEEecCCc
Confidence            444444444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=86.24  E-value=0.55  Score=34.60  Aligned_cols=19  Identities=11%  Similarity=0.123  Sum_probs=15.1

Q ss_pred             ccccccccCccCCeEeCCCCCC
Q 039136          109 NMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       109 p~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      |. +  ..+++|++|+|++|.+
T Consensus       290 p~-~--~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          290 PS-P--DELPQVGNLSLKGNPF  308 (312)
T ss_dssp             CC-T--TTSCEEEEEECTTCTT
T ss_pred             hh-H--hhCCCCCEEeccCCCC
Confidence            44 6  7888888888888875

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=86.13  E-value=0.6  Score=36.87  Aligned_cols=24  Identities=13%  Similarity=0.191  Sum_probs=17.1

Q ss_pred             ccccccccccccCccCCeEeCCCCCC
Q 039136          105 VSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       105 ~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      ++..|..+  +++++|++|+|++|++
T Consensus        65 ~~i~~~~~--~~l~~L~~L~L~~n~l   88 (570)
T 2z63_A           65 QTIEDGAY--QSLSHLSTLILTGNPI   88 (570)
T ss_dssp             CEECTTTT--TTCTTCCEEECTTCCC
T ss_pred             CccCcccc--cCchhCCEEeCcCCcC
Confidence            34444456  7888888888888864

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=85.95  E-value=0.61  Score=36.06  Aligned_cols=45  Identities=16%  Similarity=0.071  Sum_probs=28.3

Q ss_pred             ceEEEecCCCCCcccCCCC-------------CCcccccccccccccccCccCCeEeCCCCCC
Q 039136           81 RVTQLSLNQKTKINYSDYN-------------SYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        81 rV~~L~L~~~~~~~l~~~~-------------~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .+..|++.++.   ++...             .++.+++..|..+  ..+++|++|+|++|++
T Consensus       186 ~L~~L~L~~n~---l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l  243 (440)
T 3zyj_A          186 NLRYLNLAMCN---LREIPNLTPLIKLDELDLSGNHLSAIRPGSF--QGLMHLQKLWMIQSQI  243 (440)
T ss_dssp             SCCEEECTTSC---CSSCCCCTTCSSCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTCCC
T ss_pred             ccCeecCCCCc---CccccccCCCcccCEEECCCCccCccChhhh--ccCccCCEEECCCCce
Confidence            46667777766   43310             1222455556666  7888888888888864

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=85.47  E-value=0.59  Score=33.82  Aligned_cols=35  Identities=20%  Similarity=0.297  Sum_probs=28.4

Q ss_pred             CceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136           80 LRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .++..+++.+++   +          ..+| .+  ..+++|++|+|++|++
T Consensus        41 ~~L~~L~l~~n~---i----------~~l~-~l--~~l~~L~~L~L~~N~i   75 (263)
T 1xeu_A           41 SGVQNFNGDNSN---I----------QSLA-GM--QFFTNLKELHLSHNQI   75 (263)
T ss_dssp             TTCSEEECTTSC---C----------CCCT-TG--GGCTTCCEEECCSSCC
T ss_pred             CcCcEEECcCCC---c----------ccch-HH--hhCCCCCEEECCCCcc
Confidence            457888898888   7          3455 56  8999999999999975

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=85.44  E-value=0.66  Score=37.49  Aligned_cols=15  Identities=20%  Similarity=0.022  Sum_probs=8.1

Q ss_pred             ccCccCCeEeCCCCC
Q 039136          115 HPFEELQRLDLSDKL  129 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~  129 (130)
                      +.+++|++|+|++|.
T Consensus       120 ~~l~~L~~L~L~~n~  134 (597)
T 3oja_B          120 QNVPLLTVLVLERND  134 (597)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             cCCCCCCEEEeeCCC
Confidence            555555555555554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=85.00  E-value=0.39  Score=35.58  Aligned_cols=15  Identities=27%  Similarity=0.204  Sum_probs=7.5

Q ss_pred             ccCccCCeEeCCCCC
Q 039136          115 HPFEELQRLDLSDKL  129 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~  129 (130)
                      +.+++|++|++++|.
T Consensus       308 ~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          308 GGLTNLTTLFLSQNH  322 (347)
T ss_dssp             HTCTTCSEEECCSSS
T ss_pred             hccccCCEEEccCCc
Confidence            445555555555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=84.74  E-value=0.058  Score=37.35  Aligned_cols=34  Identities=26%  Similarity=0.426  Sum_probs=24.1

Q ss_pred             ceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136           81 RVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        81 rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .+..|+++++.   +         ++ +| .+  ..+++|++|+|++|.+
T Consensus        49 ~L~~L~ls~n~---l---------~~-l~-~~--~~l~~L~~L~l~~n~l   82 (198)
T 1ds9_A           49 ACKHLALSTNN---I---------EK-IS-SL--SGMENLRILSLGRNLI   82 (198)
T ss_dssp             TCSEEECSEEE---E---------SC-CC-CH--HHHTTCCEEEEEEEEE
T ss_pred             CCCEEECCCCC---C---------cc-cc-cc--ccCCCCCEEECCCCCc
Confidence            56677777766   5         23 66 66  7888888888887753

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=84.72  E-value=0.74  Score=33.99  Aligned_cols=16  Identities=19%  Similarity=0.457  Sum_probs=10.7

Q ss_pred             ccCccCCeEeCCCCCC
Q 039136          115 HPFEELQRLDLSDKLV  130 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~l  130 (130)
                      ..+++|++|+|++|++
T Consensus       104 ~~l~~L~~L~l~~n~l  119 (308)
T 1h6u_A          104 AGLQSIKTLDLTSTQI  119 (308)
T ss_dssp             TTCTTCCEEECTTSCC
T ss_pred             cCCCCCCEEECCCCCC
Confidence            6667777777776653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=84.63  E-value=0.66  Score=39.17  Aligned_cols=25  Identities=24%  Similarity=0.295  Sum_probs=14.7

Q ss_pred             cccccccc--cccccCccCCeEeCCCCCC
Q 039136          104 GVSFLNMS--LLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       104 ~~G~ip~~--l~~~~l~~L~~LdLs~N~l  130 (130)
                      +++.+|..  +  +++++|++|||++|++
T Consensus       109 l~~~~~~~~~~--~~L~~L~~L~Ls~N~l  135 (844)
T 3j0a_A          109 LSDAVLKDGYF--RNLKALTRLDLSKNQI  135 (844)
T ss_dssp             CSSCCSTTCCC--SSCSSCCEEEEESCCC
T ss_pred             CCcccccCccc--cccCCCCEEECCCCcc
Confidence            34444443  4  6677777777776653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=84.25  E-value=0.78  Score=37.53  Aligned_cols=22  Identities=9%  Similarity=0.161  Sum_probs=19.4

Q ss_pred             ccccccccccCccCCeEeCCCCCC
Q 039136          107 FLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       107 ~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .||..+  ..+++|++|+|++|.|
T Consensus       221 ~lp~~l--~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          221 HIPENI--LSLDPTCTIILEDNPL  242 (571)
T ss_dssp             CCCGGG--GGSCTTEEEECCSSSC
T ss_pred             ecCHHH--hcCCCCCEEEeeCCcC
Confidence            688888  7899999999999975

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=83.58  E-value=0.86  Score=37.61  Aligned_cols=22  Identities=18%  Similarity=0.135  Sum_probs=19.6

Q ss_pred             ccccccccccCccCCeEeCCCCCC
Q 039136          107 FLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       107 ~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .+|..+  ..+++|+.|+|++|.+
T Consensus       275 ~lp~~l--~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          275 RLPESL--IHLSSETTVNLEGNPL  296 (622)
T ss_dssp             SCCGGG--GGSCTTCEEECCSCCC
T ss_pred             cCCHHH--hhccccCEEEecCCCC
Confidence            778888  8999999999999975

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=83.46  E-value=0.88  Score=33.34  Aligned_cols=16  Identities=19%  Similarity=0.380  Sum_probs=11.4

Q ss_pred             ccCccCCeEeCCCCCC
Q 039136          115 HPFEELQRLDLSDKLV  130 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~l  130 (130)
                      ..+++|++|+|++|++
T Consensus       109 ~~l~~L~~L~L~~n~i  124 (291)
T 1h6t_A          109 KDLKKLKSLSLEHNGI  124 (291)
T ss_dssp             TTCTTCCEEECTTSCC
T ss_pred             ccCCCCCEEECCCCcC
Confidence            6777777777777754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=82.58  E-value=0.6  Score=37.93  Aligned_cols=22  Identities=18%  Similarity=0.182  Sum_probs=18.2

Q ss_pred             cccc-ccccccCccCCeEeCCCCCC
Q 039136          107 FLNM-SLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       107 ~ip~-~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .+|+ .+  +.+++|++|+|++|++
T Consensus        87 ~l~~~~~--~~l~~L~~L~L~~n~l  109 (680)
T 1ziw_A           87 QLSDKTF--AFCTNLTELHLMSNSI  109 (680)
T ss_dssp             CCCTTTT--TTCTTCSEEECCSSCC
T ss_pred             ccChhhh--ccCCCCCEEECCCCcc
Confidence            4555 56  8999999999999975

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=82.44  E-value=1  Score=35.39  Aligned_cols=23  Identities=17%  Similarity=0.154  Sum_probs=18.2

Q ss_pred             cccccccccccccCccCCeEeCCCCCC
Q 039136          104 GVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      +++ +| ++  +++++|++|++++|++
T Consensus       143 l~~-lp-~~--~~l~~L~~L~l~~N~l  165 (454)
T 1jl5_A          143 LEK-LP-EL--QNSSFLKIIDVDNNSL  165 (454)
T ss_dssp             CSS-CC-CC--TTCTTCCEEECCSSCC
T ss_pred             CCC-Cc-cc--CCCCCCCEEECCCCcC
Confidence            344 77 57  8999999999999875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=82.06  E-value=0.6  Score=35.34  Aligned_cols=22  Identities=36%  Similarity=0.561  Sum_probs=11.7

Q ss_pred             cccccccccccCccCCeEeCCCCC
Q 039136          106 SFLNMSLLFHPFEELQRLDLSDKL  129 (130)
Q Consensus       106 G~ip~~l~~~~l~~L~~LdLs~N~  129 (130)
                      +.+|..+  ..+++|++|+|++|.
T Consensus       234 ~~l~~~l--~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          234 SALAIAL--KSWPNLRELGLNDCL  255 (386)
T ss_dssp             HHHHHHG--GGCTTCCEEECTTCC
T ss_pred             HHHHHHH--ccCCCcCEEECCCCC
Confidence            3444444  555555555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=81.68  E-value=1.1  Score=32.85  Aligned_cols=16  Identities=31%  Similarity=0.368  Sum_probs=10.8

Q ss_pred             ccCccCCeEeCCCCCC
Q 039136          115 HPFEELQRLDLSDKLV  130 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~l  130 (130)
                      ..+++|++|+|++|.+
T Consensus       175 ~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          175 AGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             TTCTTCCEEECCSSCC
T ss_pred             cCCCccCEEECCCCcC
Confidence            6667777777776654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=81.53  E-value=0.48  Score=37.25  Aligned_cols=22  Identities=14%  Similarity=0.265  Sum_probs=5.9

Q ss_pred             ccccccccccC-------------ccCCeEeCCCCCC
Q 039136          107 FLNMSLLFHPF-------------EELQRLDLSDKLV  130 (130)
Q Consensus       107 ~ip~~l~~~~l-------------~~L~~LdLs~N~l  130 (130)
                      .+|..+  +.|             ++|++||+++|++
T Consensus       374 ~ip~~l--~~L~~n~~~~~i~~~~~~L~~L~ls~N~l  408 (454)
T 1jl5_A          374 DIPESV--EDLRMNSHLAEVPELPQNLKQLHVETNPL  408 (454)
T ss_dssp             CCCTTC--CEEECCC----------------------
T ss_pred             CChHHH--HhhhhcccccccccccCcCCEEECCCCcC
Confidence            566666  666             6788888888764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=80.97  E-value=0.58  Score=35.39  Aligned_cols=39  Identities=15%  Similarity=0.193  Sum_probs=22.8

Q ss_pred             CceEEEecCCCCCcccCCCCCCccccc--ccccccccccCccCCeEeCCCCCC
Q 039136           80 LRVTQLSLNQKTKINYSDYNSYSYGVS--FLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G--~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .++..|+|+++.   +++       .|  .+|..+  ..+++|++|+|++|.+
T Consensus        94 ~~L~~L~Ls~n~---l~~-------~~~~~l~~~l--~~~~~L~~L~L~~n~l  134 (386)
T 2ca6_A           94 PKLHTVRLSDNA---FGP-------TAQEPLIDFL--SKHTPLEHLYLHNNGL  134 (386)
T ss_dssp             TTCCEEECCSCC---CCT-------TTHHHHHHHH--HHCTTCCEEECCSSCC
T ss_pred             CcccEEECCCCc---CCH-------HHHHHHHHHH--HhCCCCCEEECcCCCC
Confidence            456677777766   531       01  355555  6666666666666653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=80.74  E-value=0.95  Score=33.45  Aligned_cols=23  Identities=9%  Similarity=0.286  Sum_probs=16.9

Q ss_pred             cccccccccccccCccCCeEeCCCCCC
Q 039136          104 GVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      +++..|  +  ..+++|++||+++|.+
T Consensus       323 l~~~~~--~--~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          323 ITDIRP--L--ASLSKMDSADFANQVI  345 (347)
T ss_dssp             CCCCGG--G--GGCTTCSEESSSCC--
T ss_pred             cccccC--h--hhhhccceeehhhhcc
Confidence            345444  6  8899999999999975

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=80.18  E-value=0.68  Score=34.03  Aligned_cols=22  Identities=27%  Similarity=0.200  Sum_probs=11.8

Q ss_pred             ccccccccccccCccCCeEeCCCC
Q 039136          105 VSFLNMSLLFHPFEELQRLDLSDK  128 (130)
Q Consensus       105 ~G~ip~~l~~~~l~~L~~LdLs~N  128 (130)
                      ++.++..+  +.+++|++|+|++|
T Consensus       131 ~~~~~~~l--~~~~~L~~L~L~~~  152 (336)
T 2ast_B          131 SDPIVNTL--AKNSNLVRLNLSGC  152 (336)
T ss_dssp             CHHHHHHH--TTCTTCSEEECTTC
T ss_pred             CHHHHHHH--hcCCCCCEEECCCC
Confidence            34444444  55556666666555

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=80.05  E-value=1.4  Score=34.61  Aligned_cols=16  Identities=13%  Similarity=0.069  Sum_probs=12.2

Q ss_pred             ccCccCCeEeCCCCCC
Q 039136          115 HPFEELQRLDLSDKLV  130 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~l  130 (130)
                      +.+++|++|||++|++
T Consensus        82 ~~l~~L~~L~Ls~N~l   97 (457)
T 3bz5_A           82 SQNTNLTYLACDSNKL   97 (457)
T ss_dssp             TTCTTCSEEECCSSCC
T ss_pred             ccCCCCCEEECcCCCC
Confidence            7778888888887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	130
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-07

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.7 bits (104), Expect = 6e-07
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 14/67 (20%)

Query: 25 CVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCND-WEGVKCNATT--LR 81
          C    + ALL+IK           +   LSSW      ++DCCN  W GV C+  T   R
Sbjct: 3  CNPQDKQALLQIKKDLG-------NPTTLSSWLP----TTDCCNRTWLGVLCDTDTQTYR 51

Query: 82 VTQLSLN 88
          V  L L+
Sbjct: 52 VNNLDLS 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.51
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	96.5
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	95.81
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	95.33
d2ifga3	156	High affinity nerve growth factor receptor, N-term	94.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	94.58
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	93.68
d2ifga3	156	High affinity nerve growth factor receptor, N-term	93.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	93.46
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	93.39
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	91.61
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	91.33
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	91.16
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	89.3
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	88.72
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	88.37
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	87.61
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	87.6
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	85.83
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	84.24
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	84.21
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	83.35
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	83.2
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	80.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	80.24

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.51  E-value=1.3e-14  Score=107.93  Aligned_cols=91  Identities=31%  Similarity=0.493  Sum_probs=70.6

Q ss_pred             CCCHHHHHHHHHHHHhcccccCCCCCCccCCCCCCCCCCCCCCCC-CCceEEecCC--CCceEEEecCCCCCcccCCC--
Q 039136           24 ACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCN-DWEGVKCNAT--TLRVTQLSLNQKTKINYSDY--   98 (130)
Q Consensus        24 ~~~~~~~~aL~~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~~~C~-~W~GV~C~~~--~~rV~~L~L~~~~~~~l~~~--   98 (130)
                      -|.++|++||++||+.+.    ++.   .+.+|..  +  .+||. .|.||+|+..  ..||++|+|.+++   ++|.  
T Consensus         2 ~c~~~e~~aLl~~k~~~~----~~~---~l~sW~~--~--~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~---l~g~~~   67 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLG----NPT---TLSSWLP--T--TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN---LPKPYP   67 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT----CCG---GGTTCCT--T--SCTTTTCSTTEEECCSSSCCCEEEEEEECCC---CSSCEE
T ss_pred             CCCHHHHHHHHHHHHHCC----CCC---cCCCCCC--C--CCCCCCcCCCeEEeCCCCcEEEEEEECCCCC---CCCCCC
Confidence            488999999999999986    653   5889976  3  68994 2999999863  3489999999988   6541  


Q ss_pred             -----------C-----CCcccccccccccccccCccCCeEeCCCCCC
Q 039136           99 -----------N-----SYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        99 -----------~-----~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                                 +     .++.++|.+|+++  ++|++|++|||++|++
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i--~~L~~L~~L~Ls~N~l  113 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVGPIPPAI--AKLTQLHYLYITHTNV  113 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGG--GGCTTCSEEEEEEECC
T ss_pred             CChHHhcCcccccccccccccccccccccc--ccccccchhhhccccc
Confidence                       0     1244677888888  8888888888888764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=96.50  E-value=0.00051  Score=49.41  Aligned_cols=25  Identities=20%  Similarity=0.111  Sum_probs=22.0

Q ss_pred             cccccccccccccCccCCeEeCCCCCC
Q 039136          104 GVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      ++|.+|..+  ++|++|++|||++|+|
T Consensus       256 l~g~iP~~l--~~L~~L~~L~Ls~N~l  280 (313)
T d1ogqa_         256 IYGTLPQGL--TQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             CEECCCGGG--GGCTTCCEEECCSSEE
T ss_pred             ecccCChHH--hCCCCCCEEECcCCcc
Confidence            478999998  8999999999999964

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.81  E-value=0.0042  Score=41.65  Aligned_cols=59  Identities=19%  Similarity=0.283  Sum_probs=36.0

Q ss_pred             CCCCCceEEecCC---------CCceEEEecCCCCCcccCC-CC---------------CCcccccccccccccccCccC
Q 039136           66 CCNDWEGVKCNAT---------TLRVTQLSLNQKTKINYSD-YN---------------SYSYGVSFLNMSLLFHPFEEL  120 (130)
Q Consensus        66 ~C~~W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~-~~---------------~~~~~~G~ip~~l~~~~l~~L  120 (130)
                      .|. |..|.|...         ...++.|+|+++.   ++. ..               .++.+.+..+..+  ..+++|
T Consensus         7 ~C~-~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~---i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~--~~~~~L   80 (192)
T d1w8aa_           7 HCE-GTTVDCTGRGLKEIPRDIPLHTTELLLNDNE---LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF--EGASHI   80 (192)
T ss_dssp             EEE-TTEEECTTSCCSSCCSCCCTTCSEEECCSCC---CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT--TTCTTC
T ss_pred             EEc-CCEEEEeCCCcCccCCCCCCCCCEEEeCCCC---CcccccccccCCCceEeeeecccccccccccccc--cccccc
Confidence            466 888888642         1257788888887   642 10               1222344444455  677788


Q ss_pred             CeEeCCCCCC
Q 039136          121 QRLDLSDKLV  130 (130)
Q Consensus       121 ~~LdLs~N~l  130 (130)
                      ++|+|++|++
T Consensus        81 ~~L~Ls~N~l   90 (192)
T d1w8aa_          81 QELQLGENKI   90 (192)
T ss_dssp             CEEECCSCCC
T ss_pred             ceeeeccccc
Confidence            8888887764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.33  E-value=0.0065  Score=38.28  Aligned_cols=11  Identities=36%  Similarity=0.489  Sum_probs=7.0

Q ss_pred             ceEEEecCCCC
Q 039136           81 RVTQLSLNQKT   91 (130)
Q Consensus        81 rV~~L~L~~~~   91 (130)
                      .++.++++++.
T Consensus        21 ~L~~L~ls~N~   31 (124)
T d1dcea3          21 LVTHLDLSHNR   31 (124)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEECCCCc
Confidence            45666666666

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.025  Score=36.72  Aligned_cols=16  Identities=38%  Similarity=0.378  Sum_probs=13.1

Q ss_pred             ccCccCCeEeCCCCCC
Q 039136          115 HPFEELQRLDLSDKLV  130 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~l  130 (130)
                      ..+++|++|||++|+|
T Consensus        77 ~~l~~L~~L~Ls~N~l   92 (156)
T d2ifga3          77 HFTPRLSRLNLSFNAL   92 (156)
T ss_dssp             GSCSCCCEEECCSSCC
T ss_pred             cccccccceeccCCCC
Confidence            7888888888888875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.58  E-value=0.013  Score=39.02  Aligned_cols=16  Identities=25%  Similarity=0.443  Sum_probs=11.1

Q ss_pred             ccCccCCeEeCCCCCC
Q 039136          115 HPFEELQRLDLSDKLV  130 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~l  130 (130)
                      .++++|++|+|++|+|
T Consensus        99 ~~l~~L~~L~L~~N~l  114 (192)
T d1w8aa_          99 LGLHQLKTLNLYDNQI  114 (192)
T ss_dssp             TTCTTCCEEECCSSCC
T ss_pred             hCCCcccccccCCccc
Confidence            6677777777777764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.68  E-value=0.024  Score=39.98  Aligned_cols=22  Identities=14%  Similarity=0.075  Sum_probs=18.1

Q ss_pred             ccccccccccCccCCeEeCCCCCC
Q 039136          107 FLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       107 ~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .+|..+  ..+++|++|+|++|++
T Consensus       233 ~lp~~l--~~l~~L~~L~Ls~N~i  254 (305)
T d1xkua_         233 KVPGGL--ADHKYIQVVYLHNNNI  254 (305)
T ss_dssp             SCCTTT--TTCSSCCEEECCSSCC
T ss_pred             cccccc--ccccCCCEEECCCCcc
Confidence            577777  8889999999998875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.53  E-value=0.03  Score=36.39  Aligned_cols=15  Identities=20%  Similarity=0.259  Sum_probs=7.2

Q ss_pred             ccCccCCeEeCCCCC
Q 039136          115 HPFEELQRLDLSDKL  129 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~  129 (130)
                      ..+++|+.|+|++|+
T Consensus        53 ~~l~~L~~L~Ls~N~   67 (156)
T d2ifga3          53 RGLGELRNLTIVKSG   67 (156)
T ss_dssp             CSCCCCSEEECCSSC
T ss_pred             ccccccCcceeeccc
Confidence            444444444444444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.46  E-value=0.039  Score=36.00  Aligned_cols=16  Identities=13%  Similarity=0.237  Sum_probs=12.6

Q ss_pred             ccCccCCeEeCCCCCC
Q 039136          115 HPFEELQRLDLSDKLV  130 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~l  130 (130)
                      ..+++|++|++++|++
T Consensus        60 ~~l~~L~~L~ls~N~i   75 (162)
T d1a9na_          60 PLLRRLKTLLVNNNRI   75 (162)
T ss_dssp             CCCSSCCEEECCSSCC
T ss_pred             ccCcchhhhhcccccc
Confidence            6778888888888864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.39  E-value=0.037  Score=38.92  Aligned_cols=59  Identities=19%  Similarity=0.276  Sum_probs=35.7

Q ss_pred             CCCCCceEEecCC---------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCC
Q 039136           66 CCNDWEGVKCNAT---------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQ  121 (130)
Q Consensus        66 ~C~~W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~  121 (130)
                      -|. |.+|.|+..         ...++.|+++++.   ++...               ..+-.....|..+  .++++|+
T Consensus         9 ~c~-~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~---i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f--~~l~~L~   82 (305)
T d1xkua_           9 QCH-LRVVQCSDLGLEKVPKDLPPDTALLDLQNNK---ITEIKDGDFKNLKNLHTLILINNKISKISPGAF--APLVKLE   82 (305)
T ss_dssp             EEE-TTEEECTTSCCCSCCCSCCTTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT--TTCTTCC
T ss_pred             Eec-CCEEEecCCCCCccCCCCCCCCCEEECcCCc---CCCcChhHhhccccccccccccccccccchhhh--hCCCccC
Confidence            377 999999741         1347788888887   53210               0111222224445  7788888


Q ss_pred             eEeCCCCCC
Q 039136          122 RLDLSDKLV  130 (130)
Q Consensus       122 ~LdLs~N~l  130 (130)
                      +|++++|++
T Consensus        83 ~L~l~~n~l   91 (305)
T d1xkua_          83 RLYLSKNQL   91 (305)
T ss_dssp             EEECCSSCC
T ss_pred             EecccCCcc
Confidence            888888764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.61  E-value=0.073  Score=36.89  Aligned_cols=15  Identities=27%  Similarity=0.366  Sum_probs=7.4

Q ss_pred             ccCccCCeEeCCCCC
Q 039136          115 HPFEELQRLDLSDKL  129 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~  129 (130)
                      ..+++|++|||++|+
T Consensus       169 ~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         169 NGLENLDTLLLQENS  183 (266)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             ccccccceeecccCC
Confidence            444555555555544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.33  E-value=0.061  Score=36.36  Aligned_cols=48  Identities=15%  Similarity=0.358  Sum_probs=32.5

Q ss_pred             CCCCceEEecCC---------CCceEEEecCCCCCcccCCCCCCccccccccc-ccccccCccCCeEeCCCCCC
Q 039136           67 CNDWEGVKCNAT---------TLRVTQLSLNQKTKINYSDYNSYSYGVSFLNM-SLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        67 C~~W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~-~l~~~~l~~L~~LdLs~N~l  130 (130)
                      |. ...|.|...         ...++.|++.++.   +          ..+|. .+  .++++|++||+++|.+
T Consensus         8 C~-~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~---i----------~~l~~~~f--~~l~~L~~L~ls~n~~   65 (242)
T d1xwdc1           8 CS-NRVFLCQESKVTEIPSDLPRNAIELRFVLTK---L----------RVIQKGAF--SGFGDLEKIEISQNDV   65 (242)
T ss_dssp             EC-SSEEEEESCSCSSCCSCSCSCCSEEEEESCC---C----------CEECTTTT--TTCTTCCEEEEESCTT
T ss_pred             Cc-CCEEEEeCCCCCCcCCCCCCCCCEEECcCCc---C----------CccChhHh--hccchhhhhhhccccc
Confidence            55 677888531         1246677777777   5          35555 45  7889999999988863

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.16  E-value=0.076  Score=36.81  Aligned_cols=11  Identities=27%  Similarity=0.311  Sum_probs=7.5

Q ss_pred             ceEEEecCCCC
Q 039136           81 RVTQLSLNQKT   91 (130)
Q Consensus        81 rV~~L~L~~~~   91 (130)
                      .++.|+|+++.
T Consensus        32 ~l~~L~Ls~N~   42 (266)
T d1p9ag_          32 DTTILHLSENL   42 (266)
T ss_dssp             TCCEEECTTSC
T ss_pred             CCCEEECcCCc
Confidence            46677777776

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.30  E-value=0.17  Score=31.32  Aligned_cols=16  Identities=19%  Similarity=0.185  Sum_probs=11.9

Q ss_pred             ccCccCCeEeCCCCCC
Q 039136          115 HPFEELQRLDLSDKLV  130 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~l  130 (130)
                      ..+++|++||+++|.+
T Consensus        87 ~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          87 VSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             GGCTTCCEEECTTSGG
T ss_pred             cCCCCCCEEECCCCcC
Confidence            6777788888877753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.72  E-value=0.11  Score=33.64  Aligned_cols=15  Identities=13%  Similarity=0.111  Sum_probs=8.2

Q ss_pred             ccCccCCeEeCCCCC
Q 039136          115 HPFEELQRLDLSDKL  129 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~  129 (130)
                      ..+++|++|++++|.
T Consensus       109 ~~l~~L~~L~l~~N~  123 (162)
T d1a9na_         109 ASLKSLTYLCILRNP  123 (162)
T ss_dssp             GGCTTCCEEECCSSG
T ss_pred             ccccccchhhcCCCc
Confidence            455555555555553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.37  E-value=0.055  Score=35.16  Aligned_cols=39  Identities=15%  Similarity=0.189  Sum_probs=25.8

Q ss_pred             CceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136           80 LRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      ..+..|+|+++.   ++.       -..++..+  ..+++|++|||++|.+
T Consensus        65 ~~L~~L~Ls~N~---i~~-------l~~~~~~~--~~l~~L~~L~Ls~N~i  103 (162)
T d1koha1          65 PELLSLNLSNNR---LYR-------LDDMSSIV--QKAPNLKILNLSGNEL  103 (162)
T ss_dssp             TTCCCCCCCSSC---CCC-------CSGGGTHH--HHSTTCCCCCCTTSCC
T ss_pred             CCCCEeeCCCcc---ccC-------CchhHHHH--hhCCcccccccccCcc
Confidence            357778888887   631       11233344  6788888888888874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=87.61  E-value=0.2  Score=33.53  Aligned_cols=16  Identities=13%  Similarity=0.320  Sum_probs=13.1

Q ss_pred             ccCccCCeEeCCCCCC
Q 039136          115 HPFEELQRLDLSDKLV  130 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~l  130 (130)
                      +.+++|++|+|++|++
T Consensus       192 ~~l~~L~~L~Ls~N~l  207 (227)
T d1h6ua2         192 ASLPNLIEVHLKNNQI  207 (227)
T ss_dssp             GGCTTCCEEECTTSCC
T ss_pred             cCCCCCCEEECcCCcC
Confidence            7788888888888864

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.60  E-value=0.23  Score=34.40  Aligned_cols=25  Identities=12%  Similarity=0.025  Sum_probs=16.6

Q ss_pred             cccccccccccccCccCCeEeCCCCCC
Q 039136          104 GVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      +++..|..+  ..+++|++||+++|++
T Consensus       189 l~~i~~~~f--~~l~~L~~L~l~~N~i  213 (284)
T d1ozna_         189 VAHVHPHAF--RDLGRLMTLYLFANNL  213 (284)
T ss_dssp             CCEECTTTT--TTCTTCCEEECCSSCC
T ss_pred             ccccChhHh--hhhhhccccccccccc
Confidence            445455555  7777777777777764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=85.83  E-value=0.29  Score=34.65  Aligned_cols=16  Identities=6%  Similarity=0.198  Sum_probs=10.8

Q ss_pred             ccCccCCeEeCCCCCC
Q 039136          115 HPFEELQRLDLSDKLV  130 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~l  130 (130)
                      ..+++|++||+++|++
T Consensus       348 ~~l~~L~~L~l~~N~l  363 (384)
T d2omza2         348 ANLTNINWLSAGHNQI  363 (384)
T ss_dssp             GGCTTCCEEECCSSCC
T ss_pred             cCCCCCCEEECCCCcC
Confidence            6667777777776654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.24  E-value=0.35  Score=33.36  Aligned_cols=34  Identities=15%  Similarity=0.182  Sum_probs=26.2

Q ss_pred             eEEEecCCCCCcccCCCCCCccccccccc-ccccccCccCCeEeCCCCCC
Q 039136           82 VTQLSLNQKTKINYSDYNSYSYGVSFLNM-SLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        82 V~~L~L~~~~~~~l~~~~~~~~~~G~ip~-~l~~~~l~~L~~LdLs~N~l  130 (130)
                      ++.|+|+++.   +         + .+|+ .+  .+++.|++||+++|++
T Consensus        34 ~~~L~Ls~N~---i---------~-~i~~~~f--~~l~~L~~L~ls~n~l   68 (284)
T d1ozna_          34 SQRIFLHGNR---I---------S-HVPAASF--RACRNLTILWLHSNVL   68 (284)
T ss_dssp             CSEEECTTSC---C---------C-EECTTTT--TTCTTCCEEECCSSCC
T ss_pred             CCEEECcCCc---C---------C-CCCHHHh--hccccccccccccccc
Confidence            5677888777   6         3 4554 56  8999999999999875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=84.21  E-value=0.4  Score=31.46  Aligned_cols=16  Identities=6%  Similarity=0.252  Sum_probs=13.1

Q ss_pred             ccCccCCeEeCCCCCC
Q 039136          115 HPFEELQRLDLSDKLV  130 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~l  130 (130)
                      +.+++|++|++++|.+
T Consensus        81 ~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          81 KNLTKLVDILMNNNQI   96 (199)
T ss_dssp             TTCTTCCEEECCSSCC
T ss_pred             cCCccccccccccccc
Confidence            7888888998888763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=83.35  E-value=0.41  Score=33.75  Aligned_cols=34  Identities=12%  Similarity=0.365  Sum_probs=21.4

Q ss_pred             ceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136           81 RVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus        81 rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .+..|+++++.   ++         + +| .+  +++++|++|++++|++
T Consensus        67 nL~~L~Ls~N~---l~---------~-l~-~l--~~L~~L~~L~L~~n~i  100 (384)
T d2omza2          67 NLTQINFSNNQ---LT---------D-IT-PL--KNLTKLVDILMNNNQI  100 (384)
T ss_dssp             TCCEEECCSSC---CC---------C-CG-GG--TTCTTCCEEECCSSCC
T ss_pred             CCCEEeCcCCc---CC---------C-Cc-cc--cCCccccccccccccc
Confidence            46677777776   53         2 33 25  6777777777777754

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.20  E-value=0.66  Score=30.82  Aligned_cols=23  Identities=26%  Similarity=0.234  Sum_probs=18.9

Q ss_pred             ccccccccccCccCCeEeCCCCCC
Q 039136          107 FLNMSLLFHPFEELQRLDLSDKLV  130 (130)
Q Consensus       107 ~ip~~l~~~~l~~L~~LdLs~N~l  130 (130)
                      .+|+.. |..+++|++|||++|.+
T Consensus       191 ~l~~~~-f~~l~~L~~L~Ls~N~l  213 (242)
T d1xwdc1         191 ELPNDV-FHGASGPVILDISRTRI  213 (242)
T ss_dssp             CCCTTT-TTTSCCCSEEECTTSCC
T ss_pred             cccHHH-hcCCCCCCEEECCCCcC
Confidence            577654 48899999999999975

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=80.74  E-value=0.57  Score=30.97  Aligned_cols=16  Identities=31%  Similarity=0.368  Sum_probs=12.5

Q ss_pred             ccCccCCeEeCCCCCC
Q 039136          115 HPFEELQRLDLSDKLV  130 (130)
Q Consensus       115 ~~l~~L~~LdLs~N~l  130 (130)
                      .++++|+.|||++|++
T Consensus       175 ~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         175 AGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             TTCTTCCEEECCSSCC
T ss_pred             cCCCCCCEEECCCCCC
Confidence            6788888888888764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=80.24  E-value=0.56  Score=32.40  Aligned_cols=12  Identities=8%  Similarity=0.080  Sum_probs=7.7

Q ss_pred             CceEEEecCCCC
Q 039136           80 LRVTQLSLNQKT   91 (130)
Q Consensus        80 ~rV~~L~L~~~~   91 (130)
                      ..++.|+++.+.
T Consensus        58 ~~L~~L~Ls~N~   69 (353)
T d1jl5a_          58 PHLESLVASCNS   69 (353)
T ss_dssp             TTCSEEECCSSC
T ss_pred             CCCCEEECCCCC
Confidence            456667776666