Citrus Sinensis ID: 039218

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
GYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVETTDMKGLKKIEDNH
Secondary Structure (PSIPRED)
ccccccccEEEEcccccEEEEEEccccEEEEEEEEEccccccccEEEEEEccccccccccccccccEEEEEcccccccEEEEccccccccccEEEEEEccccccccEEEEEEEEEEEEEcccccccccEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEccccccEEEEEEEccccEEEEEEEEEccccccccEEEEEEcccccccccHccccccEEEEEccccccccEEcEEEEEEEcEEEEEEEEEcccccccEEEEEEEEEEEcccccccHHHcccccccc
Coil and Loop (DISEMBL)
gyredeglylesdadeqlliylpftQVVKLHSIVvkgpeeegpktvklfsnrehmgfsnvndfppsdtavltpdnlkgkpVVLKFVKFQNVRSLTIFiednqsdsevtKVNKIALFGTTVETTDMKGlkkiednh
Flexible Loop (DISEMBL)
gyredeglylesDADEQLLIYLPFTQVVKLHSIvvkgpeeegpKTVKLFSNREHMgfsnvndfppsDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIfiednqsdsevtkvnkialfgttvettdmkglkkiednh
Low Complexity Region (SEG)
GYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVETTDMKGLKKIEDNH
Disordered region (IsUnstruct)
*************ADEQLLIYLPFTQVVKLHSIVVK********************************AVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVE**************
Disordered Region (DISOPRED)
**R**EGLYLESDADEQLLIYLPFTQVVKLHSIVVKG**EEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVETT************
Disordered Region (DISEMBL)
********YLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVETTDMKGLKKIEDNH
Disordered Region (DISPRO)
*****EGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTV***************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
GYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVETTDMKGLKKIEDNH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
Q9SQZ9	176	PITH domain-containing pr	yes	no	0.992	0.761	0.850	3e-62
O43396	289	Thioredoxin-like protein	yes	no	0.911	0.425	0.428	9e-21
Q920J4	289	Thioredoxin-like protein	yes	no	0.911	0.425	0.420	2e-20
Q8CDN6	289	Thioredoxin-like protein	yes	no	0.911	0.425	0.420	2e-20
Q9USR1	290	Thioredoxin-like protein	yes	no	0.977	0.455	0.384	2e-19
Q9VK68	211	PITH domain-containing pr	no	no	0.874	0.559	0.338	6e-10
Q6NYX8	210	PITH domain-containing pr	no	no	0.874	0.561	0.347	9e-10
Q9GZP4	211	PITH domain-containing pr	no	no	0.866	0.554	0.35	6e-09
Q9P7A1	207	PITH domain-containing pr	no	no	0.866	0.565	0.327	1e-08
Q8BWR2	211	PITH domain-containing pr	no	no	0.866	0.554	0.333	1e-08

>sp|Q9SQZ9|PITH1_ARATH PITH domain-containing protein At3g04780 OS=Arabidopsis thaliana GN=At3g04780 PE=1 SV=2

 Score =  236 bits (602), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 114/134 (85%), Positives = 123/134 (91%)

Query: 1   GYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNV 60
           GYREDEGL LESDADEQLLIY+PF QV+KLHS  +KGPEEEGPKTVK FSN+EHM FSNV
Sbjct: 43  GYREDEGLNLESDADEQLLIYIPFNQVIKLHSFAIKGPEEEGPKTVKFFSNKEHMCFSNV 102

Query: 61  NDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTV 120
           NDFPPSDTA LT +NLKGKPVVLK+VKFQNVRSLTIFIE NQS SEVTKV KIAL+G+TV
Sbjct: 103 NDFPPSDTAELTEENLKGKPVVLKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGSTV 162

Query: 121 ETTDMKGLKKIEDN 134
           ETTDMKGLKKIED+
Sbjct: 163 ETTDMKGLKKIEDH 176

Arabidopsis thaliana (taxid: 3702)

>sp|O43396|TXNL1_HUMAN Thioredoxin-like protein 1 OS=Homo sapiens GN=TXNL1 PE=1 SV=3

 Score = 98.6 bits (244), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 79/126 (62%), Gaps = 3/126 (2%)

Query: 9   YLESDADEQLLIYLPFTQVVKLHSIVVKGPEE-EGPKTVKLFSN-REHMGFSNVNDFPPS 66
           +LESD DEQLLI + F Q VKL+S+  +GP+  +GPK VK+F N    M F       P+
Sbjct: 156 FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPT 215

Query: 67  DTAVLTPDNLKGKPVV-LKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVETTDM 125
               LT D++K   +V L++VKFQNV S+TIF++ NQ + E T+++     GT V+ T+M
Sbjct: 216 QALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPVQATNM 275

Query: 126 KGLKKI 131
              K++
Sbjct: 276 NDFKRV 281

Homo sapiens (taxid: 9606)

>sp|Q920J4|TXNL1_RAT Thioredoxin-like protein 1 OS=Rattus norvegicus GN=Txnl1 PE=1 SV=3

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/126 (42%), Positives = 79/126 (62%), Gaps = 3/126 (2%)

Query: 9   YLESDADEQLLIYLPFTQVVKLHSIVVKGPEE-EGPKTVKLFSN-REHMGFSNVNDFPPS 66
           +LESD DEQLLI + F Q VKL+S+  +GP+  +GPK VK+F N    M F       P+
Sbjct: 156 FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPT 215

Query: 67  DTAVLTPDNLKGKPVV-LKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVETTDM 125
               LT D++K   +V L++VKFQNV S+T+F++ NQ + E T+++     GT V+ T+M
Sbjct: 216 QALELTEDDIKEDGIVPLRYVKFQNVNSVTLFVQSNQGEEETTRISYFTFIGTPVQATNM 275

Query: 126 KGLKKI 131
              K++
Sbjct: 276 NDFKRV 281

Rattus norvegicus (taxid: 10116)

>sp|Q8CDN6|TXNL1_MOUSE Thioredoxin-like protein 1 OS=Mus musculus GN=Txnl1 PE=1 SV=3

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/126 (42%), Positives = 79/126 (62%), Gaps = 3/126 (2%)

Query: 9   YLESDADEQLLIYLPFTQVVKLHSIVVKGPEE-EGPKTVKLFSN-REHMGFSNVNDFPPS 66
           +LESD DEQLLI + F Q VKL+S+  +GP+  +GPK VK+F N    M F       P+
Sbjct: 156 FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPT 215

Query: 67  DTAVLTPDNLKGKPVV-LKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVETTDM 125
               LT D++K   +V L++VKFQNV S+T+F++ NQ + E T+++     GT V+ T+M
Sbjct: 216 QALELTEDDIKEDGIVPLRYVKFQNVNSVTLFVQSNQGEEETTRISYFTFIGTPVQATNM 275

Query: 126 KGLKKI 131
              K++
Sbjct: 276 NDFKRV 281

Mus musculus (taxid: 10090)

>sp|Q9USR1|TXL1_SCHPO Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=txl1 PE=4 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 6/138 (4%)

Query: 1   GYREDEGLYLESDADEQLLIYLPFTQVVKLHSIV---VKGPEEEGPKTVKLFSNR-EHMG 56
            +  +   +LESD DEQL+IY+PF +VVK+HSI    VKG     PKT+KL+ N+  ++ 
Sbjct: 152 AFNSNPSSFLESDVDEQLMIYIPFLEVVKVHSIAITPVKGETSSAPKTIKLYINQPNNLS 211

Query: 57  FSNVNDFPPSDTA--VLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIA 114
           F +   F P+     ++   + +   + L+FVKFQ V SL IFI  N  + E TK++++ 
Sbjct: 212 FEDAESFTPTQVIEDIVYEQDDQPTIIPLRFVKFQRVNSLVIFIYSNVGEEETTKISRLE 271

Query: 115 LFGTTVETTDMKGLKKIE 132
           LFG  V  +    L+K+E
Sbjct: 272 LFGEPVGDSSKGKLQKVE 289

Has a role in cellular detoxification of alkyl hydroperoxide.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9VK68|PITH1_DROME PITH domain-containing protein CG6153 OS=Drosophila melanogaster GN=CG6153 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 3   REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEG-PKTVKLFSNREHMGFSNVN 61
           R+D   Y+ESDADE+LL  +PFT  +KL  I++ G  ++  P  VK+F NR  M F +  
Sbjct: 61  RQDLSKYVESDADEELLFNIPFTGNIKLKGIIISGANDDSHPNMVKIFKNRPRMTFDDAR 120

Query: 62  DFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVE 121
             P  +   LT D         K V F +V  L+++   N  + ++T++  I L G   E
Sbjct: 121 AKPDQEFQ-LTRDARGEIEYSPKVVTFSSVHHLSLYFPSNFGE-DITRIYYIGLRGEFTE 178

Query: 122 T 122
            
Sbjct: 179 A 179

Drosophila melanogaster (taxid: 7227)

>sp|Q6NYX8|PITH1_DANRE PITH domain-containing protein 1 OS=Danio rerio GN=pithd1 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 3   REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEG-PKTVKLFSNREHMGFSNVN 61
           R D   ++ESDADE+LL  +PFT  VKL  I++ G ++E  P  ++LF N   M F + +
Sbjct: 60  RTDRNKFVESDADEELLFNIPFTGSVKLKGIIISGEDDESHPAEIRLFKNIPQMSFDDTS 119

Query: 62  DFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVE 121
              P     L  D         K  +F NV  L+I +  N   +E T+V  I L G   E
Sbjct: 120 R-EPEQAFRLNRDPRAELEYPTKIARFSNVEHLSIHVSRNFG-AESTRVYYIGLRGEYTE 177

Query: 122 T 122
            
Sbjct: 178 A 178

Danio rerio (taxid: 7955)

>sp|Q9GZP4|PITH1_HUMAN PITH domain-containing protein 1 OS=Homo sapiens GN=PITHD1 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEG-PKTVKLFSNREHMGFSNVN 61
           R D   ++ESDADE+LL  +PFT  VKL  I++ G +++  P  ++L+ N   M F +  
Sbjct: 61  RTDRSKFVESDADEELLFNIPFTGNVKLKGIIIMGEDDDSHPSEMRLYKNIPQMSFDDT- 119

Query: 62  DFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVE 121
           +  P  T  L  D         K  +F NV  L+I I  N   ++ TKV  I L G   E
Sbjct: 120 EREPDQTFSLNRDLTGELEYATKISRFSNVYHLSIHISKNFG-ADTTKVFYIGLRGEWTE 178

Homo sapiens (taxid: 9606)

>sp|Q9P7A1|PITH1_SCHPO PITH domain-containing protein P35G2.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP35G2.02 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 5/122 (4%)

Query: 3   REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVK-GPEEEGPKTVKLFSNREHMGFSNVN 61
           R D+   +ESDAD+QLL  +PF     L SI+V+  P E  P +  LF NR  + F  + 
Sbjct: 54  RYDDTDIVESDADDQLLFQVPFAGAATLKSILVRIFPNETAPHSFSLFPNRTDLDFDTIG 113

Query: 62  DFPPSDTAVLTPDNLKGKPVVLKFVK---FQNVRSLTIFIEDNQSDSEVTKVNKIALFGT 118
           D   ++T    P   +G  +    VK   +QN+++L IF   +    + T++  I L G+
Sbjct: 114 DVQATETFEF-PLTFEGSHIFEFPVKTRLYQNLQNLNIFFTKSDGSDDPTQIAYIGLRGS 172

Query: 119 TV 120
            V
Sbjct: 173 FV 174

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8BWR2|PITH1_MOUSE PITH domain-containing protein 1 OS=Mus musculus GN=Pithd1 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEG-PKTVKLFSNREHMGFSNVN 61
           R D   ++ESDADE+LL  +PFT  VKL  +++ G +++  P  ++L+ N   M F +  
Sbjct: 61  RTDRSKFVESDADEELLFNIPFTGNVKLKGVIIMGEDDDSHPSEMRLYKNIPQMSFDDT- 119

Query: 62  DFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVE 121
           +  P  T  L  D         K  +F NV  L+I I  N   ++ TK+  I L G   E
Sbjct: 120 EREPEQTFSLNRDITGELEYATKISRFSNVYHLSIHISKNFG-ADTTKIFYIGLRGEWTE 178

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
224123396	176	predicted protein [Populus trichocarpa]	0.992	0.761	0.880	2e-63
225451301	176	PREDICTED: PITH domain-containing protei	0.992	0.761	0.850	3e-63
255542318	176	conserved hypothetical protein [Ricinus	0.992	0.761	0.843	5e-62
224131294	176	predicted protein [Populus trichocarpa]	0.992	0.761	0.843	4e-61
297833176	176	hypothetical protein ARALYDRAFT_477747 [	0.992	0.761	0.858	5e-61
388513427	176	unknown [Lotus japonicus]	0.992	0.761	0.828	1e-60
388508178	177	unknown [Medicago truncatula]	0.992	0.757	0.820	2e-60
18397007	176	uncharacterized protein [Arabidopsis tha	0.992	0.761	0.850	3e-60
351722016	176	uncharacterized protein LOC100305857 [Gl	0.992	0.761	0.835	1e-59
449482968	185	PREDICTED: PITH domain-containing protei	0.970	0.708	0.778	2e-54

>gi|224123396|ref|XP_002319068.1| predicted protein [Populus trichocarpa] gi|222857444|gb|EEE94991.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 118/134 (88%), Positives = 128/134 (95%)

Query: 1   GYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNV 60
           GYRED+GL LESDADEQLLIY+PF QVVKLHSI +KGPEEEGPKTVKLFSN+EHMGFSNV
Sbjct: 43  GYREDDGLNLESDADEQLLIYVPFNQVVKLHSIAIKGPEEEGPKTVKLFSNKEHMGFSNV 102

Query: 61  NDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTV 120
           ND+PPSDT VL+PD LKGKPVVLK+VKFQNVRSLTIFIEDNQSDSE+TKV+KIALFGTTV
Sbjct: 103 NDYPPSDTIVLSPDTLKGKPVVLKYVKFQNVRSLTIFIEDNQSDSEITKVHKIALFGTTV 162

Query: 121 ETTDMKGLKKIEDN 134
           ETTDMK LKKIED+
Sbjct: 163 ETTDMKSLKKIEDH 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451301|ref|XP_002278320.1| PREDICTED: PITH domain-containing protein At3g04780 [Vitis vinifera] gi|298204881|emb|CBI34188.3| unnamed protein product [Vitis vinifera]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 114/134 (85%), Positives = 127/134 (94%)

Query: 1   GYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNV 60
           GYRED+GL+LESDADEQLLIY+PFTQV+KLHSI +KGPEEEGPKTVKLFSN+EHMGFSNV
Sbjct: 43  GYREDDGLHLESDADEQLLIYIPFTQVIKLHSIAIKGPEEEGPKTVKLFSNKEHMGFSNV 102

Query: 61  NDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTV 120
           NDFPPSDT  L+ DNLKGKP+VLK+VKFQNVRSLTIFIEDNQS SE+TKV KI L+G+TV
Sbjct: 103 NDFPPSDTVALSSDNLKGKPIVLKYVKFQNVRSLTIFIEDNQSGSEITKVQKIVLYGSTV 162

Query: 121 ETTDMKGLKKIEDN 134
           ETTDMKGLKKIED+
Sbjct: 163 ETTDMKGLKKIEDH 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542318|ref|XP_002512222.1| conserved hypothetical protein [Ricinus communis] gi|223548183|gb|EEF49674.1| conserved hypothetical protein [Ricinus communis]

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 113/134 (84%), Positives = 127/134 (94%)

Query: 1   GYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNV 60
           GYRED+GL LESDADEQLLIY+PFTQV+KLHSIV+KGPEEEGPKTVKLFSN+EHMGFSNV
Sbjct: 43  GYREDDGLNLESDADEQLLIYIPFTQVIKLHSIVIKGPEEEGPKTVKLFSNKEHMGFSNV 102

Query: 61  NDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTV 120
           NDFPPSDT +L+PD L+GKPVVLK+VKFQNVRSLTIFIEDN + S++TKV K ALFGTTV
Sbjct: 103 NDFPPSDTVILSPDTLQGKPVVLKYVKFQNVRSLTIFIEDNHTGSDITKVQKFALFGTTV 162

Query: 121 ETTDMKGLKKIEDN 134
           ETTDMKGLKK+ED+
Sbjct: 163 ETTDMKGLKKVEDH 176

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131294|ref|XP_002328503.1| predicted protein [Populus trichocarpa] gi|222838218|gb|EEE76583.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (609), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 113/134 (84%), Positives = 126/134 (94%)

Query: 1   GYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNV 60
           GYRED+GL LESDADEQLLI++PF QV+KLHSI +KGPEE+GPKTVKLFSN+EHMGFSNV
Sbjct: 43  GYREDDGLNLESDADEQLLIHIPFNQVIKLHSIAIKGPEEDGPKTVKLFSNKEHMGFSNV 102

Query: 61  NDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTV 120
           ND+PPSDT VL+PD LKGKPVVLK+VKFQNVRSLTIFI+DNQ DSE+TKV KIALFGTTV
Sbjct: 103 NDYPPSDTVVLSPDTLKGKPVVLKYVKFQNVRSLTIFIKDNQLDSEITKVQKIALFGTTV 162

Query: 121 ETTDMKGLKKIEDN 134
           ETTDMK LKKIED+
Sbjct: 163 ETTDMKSLKKIEDH 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833176|ref|XP_002884470.1| hypothetical protein ARALYDRAFT_477747 [Arabidopsis lyrata subsp. lyrata] gi|297330310|gb|EFH60729.1| hypothetical protein ARALYDRAFT_477747 [Arabidopsis lyrata subsp. lyrata]

 Score =  238 bits (608), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 115/134 (85%), Positives = 124/134 (92%)

Query: 1   GYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNV 60
           GYREDEGL LESDADEQLLIY+PF QV+KLHS  +KGPEEEGPKTVK FSN+EHM FSNV
Sbjct: 43  GYREDEGLNLESDADEQLLIYIPFNQVIKLHSFAIKGPEEEGPKTVKFFSNKEHMCFSNV 102

Query: 61  NDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTV 120
           NDFPPSDTA LT +NLKGKPVVLK+VKFQNVRSLTIFIEDNQS SEVTKV KIAL+G+TV
Sbjct: 103 NDFPPSDTAELTEENLKGKPVVLKYVKFQNVRSLTIFIEDNQSGSEVTKVQKIALYGSTV 162

Query: 121 ETTDMKGLKKIEDN 134
           ETTDMKGLKKIED+
Sbjct: 163 ETTDMKGLKKIEDH 176

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513427|gb|AFK44775.1| unknown [Lotus japonicus]

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/134 (82%), Positives = 127/134 (94%)

Query: 1   GYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNV 60
           GYRED+GL+LESDADEQLL+Y+PFTQV+KL +I++KGPEEEGPKTVKLFSN+EHMGFSNV
Sbjct: 43  GYREDDGLHLESDADEQLLLYIPFTQVIKLSAILIKGPEEEGPKTVKLFSNKEHMGFSNV 102

Query: 61  NDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTV 120
           NDFPPSD A L+PDNLKGKPV LK+VKFQNVRSLTIFIEDNQ+ SE+TKV KI L+GTTV
Sbjct: 103 NDFPPSDVADLSPDNLKGKPVPLKYVKFQNVRSLTIFIEDNQTGSEITKVQKITLYGTTV 162

Query: 121 ETTDMKGLKKIEDN 134
           ETTDMKGLKK+ED+
Sbjct: 163 ETTDMKGLKKVEDH 176

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508178|gb|AFK42155.1| unknown [Medicago truncatula]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 110/134 (82%), Positives = 128/134 (95%)

Query: 1   GYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNV 60
           GYRED+GL+LESDADEQLL+Y+PFTQV+KL+S+  KGPE+EGPKTVKLFSN+EHMGFSNV
Sbjct: 44  GYREDDGLHLESDADEQLLLYIPFTQVIKLYSVAFKGPEDEGPKTVKLFSNKEHMGFSNV 103

Query: 61  NDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTV 120
           ND+PPSDT VL+P+NLKGKPV+LK+VKFQNVRSLTIFIEDNQ+DSE+TKV KI L G+TV
Sbjct: 104 NDYPPSDTLVLSPENLKGKPVLLKYVKFQNVRSLTIFIEDNQTDSEITKVQKIMLIGSTV 163

Query: 121 ETTDMKGLKKIEDN 134
           ETTDMKGLKKIED+
Sbjct: 164 ETTDMKGLKKIEDH 177

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397007|ref|NP_566238.1| uncharacterized protein [Arabidopsis thaliana] gi|85701293|sp|Q9SQZ9.2|PITH1_ARATH RecName: Full=PITH domain-containing protein At3g04780 gi|16648681|gb|AAL25533.1| AT3g04780/F7O18_27 [Arabidopsis thaliana] gi|20147247|gb|AAM10337.1| AT3g04780/F7O18_27 [Arabidopsis thaliana] gi|21593799|gb|AAM65766.1| unknown [Arabidopsis thaliana] gi|332640614|gb|AEE74135.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 114/134 (85%), Positives = 123/134 (91%)

Query: 1   GYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNV 60
           GYREDEGL LESDADEQLLIY+PF QV+KLHS  +KGPEEEGPKTVK FSN+EHM FSNV
Sbjct: 43  GYREDEGLNLESDADEQLLIYIPFNQVIKLHSFAIKGPEEEGPKTVKFFSNKEHMCFSNV 102

Query: 61  NDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTV 120
           NDFPPSDTA LT +NLKGKPVVLK+VKFQNVRSLTIFIE NQS SEVTKV KIAL+G+TV
Sbjct: 103 NDFPPSDTAELTEENLKGKPVVLKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGSTV 162

Query: 121 ETTDMKGLKKIEDN 134
           ETTDMKGLKKIED+
Sbjct: 163 ETTDMKGLKKIEDH 176

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722016|ref|NP_001237741.1| uncharacterized protein LOC100305857 [Glycine max] gi|255626791|gb|ACU13740.1| unknown [Glycine max]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 112/134 (83%), Positives = 126/134 (94%)

Query: 1   GYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNV 60
           GYRED+GL+LESDADEQLL+Y+PFTQVVKL+S V+KGPEEEGPKTVKLFSN+EHMGFSNV
Sbjct: 43  GYREDDGLHLESDADEQLLLYIPFTQVVKLYSFVIKGPEEEGPKTVKLFSNKEHMGFSNV 102

Query: 61  NDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTV 120
           NDFPPSD A L+ +NLKGKPV+LK+VKFQNVRSLTIFIE+NQS SE+TKV KI L GTTV
Sbjct: 103 NDFPPSDVANLSEENLKGKPVLLKYVKFQNVRSLTIFIENNQSGSEITKVQKIVLHGTTV 162

Query: 121 ETTDMKGLKKIEDN 134
           ETTDMKGLKKIED+
Sbjct: 163 ETTDMKGLKKIEDH 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449482968|ref|XP_004156457.1| PREDICTED: PITH domain-containing protein At3g04780-like [Cucumis sativus]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/131 (77%), Positives = 120/131 (91%)

Query: 3   REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNVND 62
           R+++ L LESDADEQLLIY+PF QVVKLHS+V+KGPEEEGP+TVKLFSN+E+MGF NVND
Sbjct: 54  RDNDSLLLESDADEQLLIYIPFNQVVKLHSLVIKGPEEEGPRTVKLFSNKENMGFGNVND 113

Query: 63  FPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVET 122
           +PPSDT VL+P+NL GK  V+K+VKFQNVRSLTIFIEDNQS ++ TK+ KIAL+GTTVET
Sbjct: 114 YPPSDTIVLSPENLTGKSEVVKYVKFQNVRSLTIFIEDNQSGTDTTKIQKIALYGTTVET 173

Query: 123 TDMKGLKKIED 133
           TDMKGLKKIED
Sbjct: 174 TDMKGLKKIED 184

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
TAIR|locus:2084883	176	AT3G04780 [Arabidopsis thalian	0.992	0.761	0.850	2.2e-57
UNIPROTKB|E1BZS8	289	TXNL1 "Uncharacterized protein	0.948	0.442	0.416	1.4e-23
UNIPROTKB|G3V1K0	166	TXNL1 "Thioredoxin-like 1, iso	0.948	0.771	0.424	1.6e-22
UNIPROTKB|K7ER96	281	TXNL1 "Thioredoxin-like protei	0.948	0.455	0.424	1.6e-22
UNIPROTKB|O43396	289	TXNL1 "Thioredoxin-like protei	0.948	0.442	0.424	1.6e-22
UNIPROTKB|F1MLV3	289	TXNL1 "Uncharacterized protein	0.911	0.425	0.428	2.1e-22
UNIPROTKB|E2R5M7	289	TXNL1 "Uncharacterized protein	0.911	0.425	0.428	2.1e-22
UNIPROTKB|F1S1X9	289	TXNL1 "Uncharacterized protein	0.911	0.425	0.428	2.1e-22
MGI|MGI:1860078	289	Txnl1 "thioredoxin-like 1" [Mu	0.948	0.442	0.416	2.6e-22
RGD|621717	289	Txnl1 "thioredoxin-like 1" [Ra	0.911	0.425	0.420	3.4e-22

TAIR|locus:2084883 AT3G04780 [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 114/134 (85%), Positives = 123/134 (91%)

Query:     1 GYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNV 60
             GYREDEGL LESDADEQLLIY+PF QV+KLHS  +KGPEEEGPKTVK FSN+EHM FSNV
Sbjct:    43 GYREDEGLNLESDADEQLLIYIPFNQVIKLHSFAIKGPEEEGPKTVKFFSNKEHMCFSNV 102

Query:    61 NDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTV 120
             NDFPPSDTA LT +NLKGKPVVLK+VKFQNVRSLTIFIE NQS SEVTKV KIAL+G+TV
Sbjct:   103 NDFPPSDTAELTEENLKGKPVVLKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGSTV 162

Query:   121 ETTDMKGLKKIEDN 134
             ETTDMKGLKKIED+
Sbjct:   163 ETTDMKGLKKIEDH 176

GO:0005737 "cytoplasm" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|E1BZS8 TXNL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 55/132 (41%), Positives = 83/132 (62%)

Query:     3 REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEE-EGPKTVKLFSNREH-MGFSNV 60
             R+D   YLESD DEQLLI + F+Q VKL+S+ ++GP+  +GPK +K+F N    M F   
Sbjct:   151 RKDS-TYLESDCDEQLLITVAFSQPVKLYSMKLQGPDNGQGPKYIKIFINLPRSMDFEEA 209

Query:    61 NDFPPSDTAVLTPDNLKGKPVV-LKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTT 119
                 P+    LTPD++K   ++ L++VKFQNV S+T+F++ N  D E T++      GT 
Sbjct:   210 ERSEPTQALELTPDDIKEDGIIQLRYVKFQNVNSVTLFVQSNHGDEETTRITYFTFIGTP 269

Query:   120 VETTDMKGLKKI 131
             V+ T+M   K++
Sbjct:   270 VQATNMNDFKRV 281

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|G3V1K0 TXNL1 "Thioredoxin-like 1, isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 56/132 (42%), Positives = 82/132 (62%)

Query:     3 REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEE-EGPKTVKLFSNREH-MGFSNV 60
             R+D   +LESD DEQLLI + F Q VKL+S+  +GP+  +GPK VK+F N    M F   
Sbjct:    28 RKDT-TFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEA 86

Query:    61 NDFPPSDTAVLTPDNLKGKPVV-LKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTT 119
                 P+    LT D++K   +V L++VKFQNV S+TIF++ NQ + E T+++     GT 
Sbjct:    87 ERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTP 146

Query:   120 VETTDMKGLKKI 131
             V+ T+M   K++
Sbjct:   147 VQATNMNDFKRV 158

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|K7ER96 TXNL1 "Thioredoxin-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 56/132 (42%), Positives = 82/132 (62%)

Query:     3 REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEE-EGPKTVKLFSNREH-MGFSNV 60
             R+D   +LESD DEQLLI + F Q VKL+S+  +GP+  +GPK VK+F N    M F   
Sbjct:   147 RKDT-TFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEA 205

Query:    61 NDFPPSDTAVLTPDNLKGKPVV-LKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTT 119
                 P+    LT D++K   +V L++VKFQNV S+TIF++ NQ + E T+++     GT 
Sbjct:   206 ERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTP 265

Query:   120 VETTDMKGLKKI 131
             V+ T+M   K++
Sbjct:   266 VQATNMNDFKRV 277

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|O43396 TXNL1 "Thioredoxin-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 56/132 (42%), Positives = 82/132 (62%)

Query:     3 REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEE-EGPKTVKLFSNREH-MGFSNV 60
             R+D   +LESD DEQLLI + F Q VKL+S+  +GP+  +GPK VK+F N    M F   
Sbjct:   151 RKDT-TFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEA 209

Query:    61 NDFPPSDTAVLTPDNLKGKPVV-LKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTT 119
                 P+    LT D++K   +V L++VKFQNV S+TIF++ NQ + E T+++     GT 
Sbjct:   210 ERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTP 269

Query:   120 VETTDMKGLKKI 131
             V+ T+M   K++
Sbjct:   270 VQATNMNDFKRV 281

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015036 "disulfide oxidoreductase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1MLV3 TXNL1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 54/126 (42%), Positives = 79/126 (62%)

Query:     9 YLESDADEQLLIYLPFTQVVKLHSIVVKGPEE-EGPKTVKLFSNREH-MGFSNVNDFPPS 66
             +LESD DEQLLI + F Q VKL+S+  +GP+  +GPK VK+F N    M F       P+
Sbjct:   156 FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPT 215

Query:    67 DTAVLTPDNLKGKPVV-LKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVETTDM 125
                 LT D++K   +V L++VKFQNV S+TIF++ NQ + E T+++     GT V+ T+M
Sbjct:   216 QALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPVQATNM 275

Query:   126 KGLKKI 131
                K++
Sbjct:   276 NDFKRV 281

GO:0005737 "cytoplasm" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

UNIPROTKB|E2R5M7 TXNL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 54/126 (42%), Positives = 79/126 (62%)

Query:     9 YLESDADEQLLIYLPFTQVVKLHSIVVKGPEE-EGPKTVKLFSNREH-MGFSNVNDFPPS 66
             +LESD DEQLLI + F Q VKL+S+  +GP+  +GPK VK+F N    M F       P+
Sbjct:   156 FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPT 215

Query:    67 DTAVLTPDNLKGKPVV-LKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVETTDM 125
                 LT D++K   +V L++VKFQNV S+TIF++ NQ + E T+++     GT V+ T+M
Sbjct:   216 QALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPVQATNM 275

Query:   126 KGLKKI 131
                K++
Sbjct:   276 NDFKRV 281

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

UNIPROTKB|F1S1X9 TXNL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 54/126 (42%), Positives = 79/126 (62%)

Query:     9 YLESDADEQLLIYLPFTQVVKLHSIVVKGPEE-EGPKTVKLFSNREH-MGFSNVNDFPPS 66
             +LESD DEQLLI + F Q VKL+S+  +GP+  +GPK VK+F N    M F       P+
Sbjct:   156 FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPT 215

Query:    67 DTAVLTPDNLKGKPVV-LKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVETTDM 125
                 LT D++K   +V L++VKFQNV S+TIF++ NQ + E T+++     GT V+ T+M
Sbjct:   216 QALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPVQATNM 275

Query:   126 KGLKKI 131
                K++
Sbjct:   276 NDFKRV 281

GO:0005737 "cytoplasm" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

MGI|MGI:1860078 Txnl1 "thioredoxin-like 1" [Mus musculus (taxid:10090)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 55/132 (41%), Positives = 82/132 (62%)

Query:     3 REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEE-EGPKTVKLFSNREH-MGFSNV 60
             R+D   +LESD DEQLLI + F Q VKL+S+  +GP+  +GPK VK+F N    M F   
Sbjct:   151 RKDMS-FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEA 209

Query:    61 NDFPPSDTAVLTPDNLKGKPVV-LKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTT 119
                 P+    LT D++K   +V L++VKFQNV S+T+F++ NQ + E T+++     GT 
Sbjct:   210 ERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTLFVQSNQGEEETTRISYFTFIGTP 269

Query:   120 VETTDMKGLKKI 131
             V+ T+M   K++
Sbjct:   270 VQATNMNDFKRV 281

GO:0000502 "proteasome complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0015036 "disulfide oxidoreductase activity" evidence=ISO

GO:0022900 "electron transport chain" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO

RGD|621717 Txnl1 "thioredoxin-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 53/126 (42%), Positives = 79/126 (62%)

Query:     9 YLESDADEQLLIYLPFTQVVKLHSIVVKGPEE-EGPKTVKLFSNREH-MGFSNVNDFPPS 66
             +LESD DEQLLI + F Q VKL+S+  +GP+  +GPK VK+F N    M F       P+
Sbjct:   156 FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPT 215

Query:    67 DTAVLTPDNLKGKPVV-LKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVETTDM 125
                 LT D++K   +V L++VKFQNV S+T+F++ NQ + E T+++     GT V+ T+M
Sbjct:   216 QALELTEDDIKEDGIVPLRYVKFQNVNSVTLFVQSNQGEEETTRISYFTFIGTPVQATNM 275

Query:   126 KGLKKI 131
                K++
Sbjct:   276 NDFKRV 281

GO:0000502 "proteasome complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0015036 "disulfide oxidoreductase activity" evidence=ISO

GO:0022900 "electron transport chain" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SQZ9	PITH1_ARATH	No assigned EC number	0.8507	0.9925	0.7613	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	135
pfam06201	151	pfam06201, PITH, PITH domain	8e-52

>gnl|CDD|218936 pfam06201, PITH, PITH domain

 Score =  160 bits (407), Expect = 8e-52
 Identities = 59/119 (49%), Positives = 79/119 (66%), Gaps = 2/119 (1%)

Query: 3   REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEE-GPKTVKLFSNREHMGFSNVN 61
           R D   YLESDADEQLLI +PFTQ VKLHSI+++G +++  PKT+KLF N  ++ F +  
Sbjct: 33  RLDPEPYLESDADEQLLINIPFTQPVKLHSILIRGLDDDSAPKTIKLFINPPNLDFDDAE 92

Query: 62  DFPPSDTAVLTPDNLKG-KPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTT 119
           D  P+ T  L+  + +G     LK+VKFQNV SLTIF EDN  + E T+++ I L G  
Sbjct: 93  DLTPTQTLELSESDDEGGVEYPLKYVKFQNVNSLTIFFEDNFGEDETTRIDYIGLRGEP 151

This family was formerly known as DUF1000. The full-length, Txnl1, protein which is a probable component of the 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome. PITH derives from proteasome-interacting thioredoxin domain. Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
PF06201	152	PITH: PITH domain; InterPro: IPR010400 The full-le	100.0
KOG1730	206	consensus Thioredoxin-like protein [Posttranslatio	100.0
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	100.0
PF07738	135	Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: I	97.39
cd08667	131	APC10-ZZEF1 APC10/DOC1-like domain of uncharacteri	96.94
cd08366	139	APC10 APC10 subunit of the anaphase-promoting comp	96.68
cd08666	134	APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a H	95.99
cd08159	129	APC10-like APC10-like DOC1 domains in E3 ubiquitin	95.87
PF03256	193	APC10: Anaphase-promoting complex, subunit 10 (APC	95.32
cd08365	131	APC10-like1 APC10-like DOC1 domains of E3 ubiquiti	95.29
KOG2687	414	consensus Spindle pole body protein, contains UNC-	94.64
KOG3437	184	consensus Anaphase-promoting complex (APC), subuni	94.58
cd08665	131	APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit	94.36
cd08664	152	APC10-HERC2 APC10-like DOC1 domain present in HERC	92.43
COG5156	189	DOC1 Anaphase-promoting complex (APC), subunit 10	91.01

>PF06201 PITH: PITH domain; InterPro: IPR010400 The full-length, Txnl1, protein which is a probable component of the 32 kDa 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome

Probab=100.00  E-value=2.8e-47  Score=289.51  Aligned_cols=116  Identities=53%  Similarity=0.807  Sum_probs=87.8

Q ss_pred             ccCCCceeecCCCcceEEEecccCceeEEEEEEeCC--CCCCceEEEEeec-CCCCCccCCCCCCCceEEEecC-CCCCC
Q 039218            3 REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGP--EEEGPKTVKLFSN-REHMGFSNVNDFPPSDTAVLTP-DNLKG   78 (135)
Q Consensus         3 R~d~~~~l~SD~D~QLii~IpF~~~Vkl~sI~i~~~--~~~~P~~iKlf~N-~~~ldFd~~~~~~p~Q~~~l~~-~~~~~   78 (135)
                      |.|. .+|+||+|+||||||||+++||||||+|+++  ++++|++||||+| +++|||++|++.+|+|+++|++ +..+.
T Consensus        33 r~d~-~~l~SD~D~QLii~IpF~~~Vkl~si~i~~~~~~~~~P~~iKlf~N~~~~ldF~~~~~~~p~q~~~l~~~~~~~~  111 (152)
T PF06201_consen   33 RLDP-PFLESDADEQLIIHIPFTQPVKLHSIIIKGPPDDDSAPKTIKLFINQRPNLDFDDAESIKPTQELELTEEDSDGG  111 (152)
T ss_dssp             TTS----EE-SS-SSEEEEEEEEEEEEEEEEEEE---STTTSEEEEEEEES-SS---CCHHCCS--SCEEE--TTTCCCT
T ss_pred             ccCc-cccccCCCceeEEEEccCCceEEEEEEEEeccCCCCCCeEEEEEECCCCCcCccccccCCCCceEEcCccccCCc
Confidence            5565 8999999999999999999999999999995  6799999999999 8889999999999999999997 44478


Q ss_pred             eEEEccccccccccEEEEEEeCCCCCCceEEEEEEEEEeEe
Q 039218           79 KPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTT  119 (135)
Q Consensus        79 ~~~~Lr~~KFqnV~sLtif~~~n~~g~~~T~I~~I~l~G~~  119 (135)
                      .+|+||++|||||++|||||++|+|+++.|+|+||||+|++
T Consensus       112 ~~~~Lk~~KFqnV~sLtif~~~n~g~~~~T~I~~i~l~G~~  152 (152)
T PF06201_consen  112 VEYPLKFVKFQNVNSLTIFFEDNQGGDDVTRIYYIGLRGEF  152 (152)
T ss_dssp             --EE--TTT-TTEEEEEEEEEEETT--SS-EESEEEEEEE-
T ss_pred             eEeeeeeeccCCccEEEEEEeCCcCCCccEEEEEEEEEeeC
Confidence            99999999999999999999999977999999999999985

PITH derives from proteasome-interacting thioredoxin domain which this entry represents [].; PDB: 1XOY_A 1WWY_A.

>KOG1730 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.7e-41  Score=260.58  Aligned_cols=117  Identities=39%  Similarity=0.585  Sum_probs=112.6

Q ss_pred             ccCCCceeecCCCcceEEEecccCceeEEEEEEeC-CCCCCceEEEEeecCCCCCccCCCCCCCceEEEecCCCCCCeEE
Q 039218            3 REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKG-PEEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPV   81 (135)
Q Consensus         3 R~d~~~~l~SD~D~QLii~IpF~~~Vkl~sI~i~~-~~~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~~~~~~~~~~   81 (135)
                      |.|.+.++|||+|+|||++|||++.|||++|+|.+ |++++|..|+||+||+.|||||++. +|+|++.|+.+..+..+|
T Consensus        56 R~d~se~vESDaD~eLLfniPFtg~vkLkgI~I~g~~d~shP~~~rlFkNR~~m~FdD~~~-~~dqef~lt~d~~g~iey  134 (206)
T KOG1730|consen   56 RTDRSEYVESDADEELLFNIPFTGNVKLKGISIMGEPDGSHPSKMRLFKNREQMDFDDAEA-EPDQEFSLTRDLTGEIEY  134 (206)
T ss_pred             hcchhhhhhccCCceeEEeccccCceeEEEEEEEeCCCCCCchheEeecCCccCCcchhhc-CcceecceecccCceEEe
Confidence            88999999999999999999999999999999999 7889999999999999999999988 889999999887789999


Q ss_pred             EccccccccccEEEEEEeCCCCCCceEEEEEEEEEeEecc
Q 039218           82 VLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVE  121 (135)
Q Consensus        82 ~Lr~~KFqnV~sLtif~~~n~~g~~~T~I~~I~l~G~~~~  121 (135)
                      |+|.+|||||.+|+|||+.|+ |+|.|+|+||||||+..+
T Consensus       135 ~~K~s~f~nv~nLsi~f~~nf-G~D~TqI~YIGlRGeft~  173 (206)
T KOG1730|consen  135 PTKISKFQNVHNLSIHFPKNF-GEDTTQIYYIGLRGEFTE  173 (206)
T ss_pred             ccceeeeccceeEEEEecccc-CCCcceEEEEEecceeee
Confidence            999999999999999999999 799999999999999877

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.3e-38  Score=255.17  Aligned_cols=129  Identities=50%  Similarity=0.817  Sum_probs=122.6

Q ss_pred             CCceeecCCCcceEEEecccCceeEEEEEEeCC-CCCCceEEEEeecCCC-CCccCCCCCCCceEEEecCCCCCCeEEEc
Q 039218            6 EGLYLESDADEQLLIYLPFTQVVKLHSIVVKGP-EEEGPKTVKLFSNREH-MGFSNVNDFPPSDTAVLTPDNLKGKPVVL   83 (135)
Q Consensus         6 ~~~~l~SD~D~QLii~IpF~~~Vkl~sI~i~~~-~~~~P~~iKlf~N~~~-ldFd~~~~~~p~Q~~~l~~~~~~~~~~~L   83 (135)
                      .+.+++||+||||||.|||+++||+|||.|++| .+.+|+.+|||+|+|. |||+++++.+|+|.++|.+....+..++|
T Consensus       153 ~ss~lesD~DeQl~isi~fnq~vk~hS~a~k~p~~~~~Pk~vkifin~pr~~~F~~a~~f~ptQ~lel~e~~~~~~~V~l  232 (288)
T KOG0908|consen  153 FSSNLESDCDEQLIISIPFNQAVKVHSIAIKGPANPLGPKTVKIFINQPRTMDFENAESFEPTQLLELTELDLQGLPVPL  232 (288)
T ss_pred             cccceecccccceEEEeeccCccceeeeecCCCCCCCCCeeEEEEecCccccCcccccccCcccccchhhhhccCceEEe
Confidence            346899999999999999999999999999998 7899999999999985 99999999999999999987777899999


Q ss_pred             cccccccccEEEEEEeCCCCCCceEEEEEEEEEeEeccccCCCCceecccC
Q 039218           84 KFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVETTDMKGLKKIEDN  134 (135)
Q Consensus        84 r~~KFqnV~sLtif~~~n~~g~~~T~I~~I~l~G~~~~~t~m~~l~k~~~~  134 (135)
                      |++|||||++|+||+++|+||++.|||.|++++|++.++++|+++|+++.+
T Consensus       233 ryvkfqnV~sv~iFiq~n~gg~evtri~~~~~~GsPv~~t~m~~~krv~~k  283 (288)
T KOG0908|consen  233 RYVKFQNVNSVQIFIQSNQGGEEVTRISKLGLFGSPVPTTNMNDFKRVEGK  283 (288)
T ss_pred             eeeeEEEeeEEEEEEecCCCCcccceeeeeeeccccCCCCCCCcceecccc
Confidence            999999999999999999999999999999999999999999999998764

>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development

Probab=97.39  E-value=0.0035  Score=45.81  Aligned_cols=93  Identities=16%  Similarity=0.215  Sum_probs=57.4

Q ss_pred             CcceEEEecccCceeEEEEEEeC--C----CCCCceEEEEeecCCCC--------CccCCCCCCCceEEEecCCCCCCeE
Q 039218           15 DEQLLIYLPFTQVVKLHSIVVKG--P----EEEGPKTVKLFSNREHM--------GFSNVNDFPPSDTAVLTPDNLKGKP   80 (135)
Q Consensus        15 D~QLii~IpF~~~Vkl~sI~i~~--~----~~~~P~~iKlf~N~~~l--------dFd~~~~~~p~Q~~~l~~~~~~~~~   80 (135)
                      +..--+-|-|.+++.+.+|.|.-  .    -.+|||.+.||.-...-        .|.=..+..+.|+|.|.....    
T Consensus        29 g~~~~~~I~L~~~I~v~~v~i~h~~~~~~~~sSapk~f~V~g~~~~~~~~~~~LG~f~y~~~~~~~QtF~l~~~~~----  104 (135)
T PF07738_consen   29 GSKGWLTIELSEPIYVTSVTIEHVEKSIAPFSSAPKDFEVWGSVDYPDEEWVLLGEFEYDSDGNSIQTFPLPRPPR----  104 (135)
T ss_dssp             TT-EEEEEEEEEEEEEEEEEEE---GGGSG-TTSB-EEEEEEESSSSTS--EEEEEEE--TTS-SEEEEE-SS--S----
T ss_pred             CCceEEEEEcCCcEEEEEEEEEEeccccCCcCCCCcEEEEEEEecccccceeeeceEEEcCCcCccEeeeeccCch----
Confidence            44445667788999999999986  2    45999999999765432        344223335678888754321    


Q ss_pred             EEccccccccccEEEEEEeCCCCCCceEEEEEEEEEeEe
Q 039218           81 VVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTT  119 (135)
Q Consensus        81 ~~Lr~~KFqnV~sLtif~~~n~~g~~~T~I~~I~l~G~~  119 (135)
                              +-++.|-|-|.+|+|..+-|-||++.+.|+.
T Consensus       105 --------~~~~~i~l~i~sN~G~~~ytclyr~rVhG~~  135 (135)
T PF07738_consen  105 --------QPVRYIKLRILSNHGNEEYTCLYRFRVHGES  135 (135)
T ss_dssp             ----------EEEEEEEE--BSS-SSEEEE-EEEEEEE-
T ss_pred             --------hcCcEEEEEEEcCCCCCceEEEEEEEEEeeC
Confidence                    1566777889999965669999999999973

The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.

>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs

Probab=96.94  E-value=0.017  Score=43.33  Aligned_cols=103  Identities=17%  Similarity=0.168  Sum_probs=72.7

Q ss_pred             CceeecCCCc-ceEEEecccCceeEEEEEEeC-C-C-CCCceEEEEeecCCCCCccCCCCCCCceEEEecCCCCCCeEEE
Q 039218            7 GLYLESDADE-QLLIYLPFTQVVKLHSIVVKG-P-E-EEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPVV   82 (135)
Q Consensus         7 ~~~l~SD~D~-QLii~IpF~~~Vkl~sI~i~~-~-~-~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~~~~~~~~~~~   82 (135)
                      +.|=|||.-+ .=.|++-|..-|-|+.|.|.. + + ...|+.|.+++=.   +|+++.   ...++++.+...|-..++
T Consensus        25 ~TYWQSDG~q~pH~I~i~f~~~v~i~~l~i~v~~~DeSYtPs~I~I~~G~---~~~dL~---e~~~v~l~~~~~Gwv~l~   98 (131)
T cd08667          25 STYWQSDGSARSHWIRLKMKPDVVLRHLSIAVAATDQSYMPQQVTVSVGR---SASSLQ---EVRDVHIPSNVTGYVTLL   98 (131)
T ss_pred             CccCccCCCCCCeEEEEEecCCeEEEEEEEEEcCCCCCcCCcEEEEEecC---CHhhhe---eeEEEEcCCCCceeEEEE
Confidence            4688999753 568899999999999998876 4 3 3899999999832   233333   345566642222223333


Q ss_pred             ccccccccccEEEEEEeCCCCCCceEEEEEEEEEe
Q 039218           83 LKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFG  117 (135)
Q Consensus        83 Lr~~KFqnV~sLtif~~~n~~g~~~T~I~~I~l~G  117 (135)
                      ..  .-....-|.|.|..|+.++--|+|.-|.++|
T Consensus        99 ~~--~~~~~~~iqI~I~~nhqnG~DthIRgiki~G  131 (131)
T cd08667          99 EN--ANISYLVVQINIKRCHSDGCDTRIHGLKTIG  131 (131)
T ss_pred             cC--CceEEEEEEEEeHHhccCCccceeeEEEEcC
Confidence            32  2255667899999998888889999999987

This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.

>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination

Probab=96.68  E-value=0.033  Score=41.95  Aligned_cols=106  Identities=19%  Similarity=0.198  Sum_probs=78.9

Q ss_pred             CCCceeecCCCcceEEEecccCceeEEEEEEeC-C---CCCCceEEEEeecCCCCCccCCCCCCCceEEEecCCCCCCeE
Q 039218            5 DEGLYLESDADEQLLIYLPFTQVVKLHSIVVKG-P---EEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKP   80 (135)
Q Consensus         5 d~~~~l~SD~D~QLii~IpF~~~Vkl~sI~i~~-~---~~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~~~~~~~~~   80 (135)
                      +.+.|=|||.-..=.|+|-|...|.|+.|.|.- .   +...|+.|.+++=..   +.   ++....++++.+ ..|-.-
T Consensus        27 ~~~TyWQSDg~qPH~I~i~f~k~~~i~~l~i~vd~~~DeSYtP~~I~v~~G~~---~~---dl~e~~~v~l~~-p~Gwv~   99 (139)
T cd08366          27 SLDTYWQSDGPQPHLINIQFSKKTDISAVALYLDYKLDESYTPSKISIRAGTS---PH---DLQEVRTVELEE-PNGWVH   99 (139)
T ss_pred             CCCccCCCCCCCCEEEEEEecCCcEEEEEEEEEccCCCCCCCCEEEEEEEECC---cC---chhheEEEEcCC-CCEEEE
Confidence            344578999777778999999999999998876 2   338999999998643   22   233355666643 234466


Q ss_pred             EEccc---cccccccEEEEEEeCCCCCCceEEEEEEEEEe
Q 039218           81 VVLKF---VKFQNVRSLTIFIEDNQSDSEVTKVNKIALFG  117 (135)
Q Consensus        81 ~~Lr~---~KFqnV~sLtif~~~n~~g~~~T~I~~I~l~G  117 (135)
                      ++|.-   -+...+.-|.|-|..|+.++--|+|..|.++|
T Consensus       100 i~l~~~~~~~~~~~~~iqi~I~~nh~nG~DthiR~iki~g  139 (139)
T cd08366         100 IPLEDNRDGKPLRTFFLQIAILSNHQNGRDTHIRQIKVYG  139 (139)
T ss_pred             EEccCCCCCCeeEEEEEEEEEecccCCCCCcceeeeEecC
Confidence            66654   35677788999999999878889999999887

This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the

>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination

Probab=95.99  E-value=0.2  Score=37.86  Aligned_cols=102  Identities=15%  Similarity=0.220  Sum_probs=71.5

Q ss_pred             CCceeecCCCc-ceEEEecccCceeEEEEEEeC-C--CCCCceEEEEeecCCCCCccCCCCCCCceEEEecCCCCCCeEE
Q 039218            6 EGLYLESDADE-QLLIYLPFTQVVKLHSIVVKG-P--EEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPV   81 (135)
Q Consensus         6 ~~~~l~SD~D~-QLii~IpF~~~Vkl~sI~i~~-~--~~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~~~~~~~~~~   81 (135)
                      .+.|=|||.-. +=.|+|-|..-|.|+.|.|.- +  +...|++|.++.=.    |++   ++...++++.+...+-+.+
T Consensus        29 ~~tyWQSdG~qgpH~I~l~f~~~v~i~~l~i~v~~~DeSYtP~~I~V~~G~----~~d---L~ei~~V~i~~~~~g~V~i  101 (134)
T cd08666          29 PDTYWESDGSQGQHWIRLHMKKGTIIKKLLLTVDATDDNYMPKRVAVYGGE----GDN---LKKLNDVSIDETLIGDVCI  101 (134)
T ss_pred             CCccEecCCCCCCeEEEEEECCCcEeeEEEEEecCCCCCcCCcEEEEEecC----ccC---hhheEEEEeCCCCCCeEEE
Confidence            34688999766 799999999999999999987 3  33899999999865    333   3345566665422222333


Q ss_pred             EccccccccccEEEEEEeCCCCCCceEEEEEEEEE
Q 039218           82 VLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALF  116 (135)
Q Consensus        82 ~Lr~~KFqnV~sLtif~~~n~~g~~~T~I~~I~l~  116 (135)
                       |+..+ ....-|.|.|.+|+.++--|+|..|.++
T Consensus       102 -l~~~~-~~~~~iqI~I~~nhqnG~DthIRgiKI~  134 (134)
T cd08666         102 -LEDMT-THLPVIEIRIKECKDEGIDVRIRGIKIK  134 (134)
T ss_pred             -ecCCc-eEeEEEEEEeHHhccCCccceeeEEEeC
Confidence             32221 1223589999999878888999998763

This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i

>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination

Probab=95.87  E-value=0.17  Score=37.86  Aligned_cols=102  Identities=18%  Similarity=0.144  Sum_probs=71.7

Q ss_pred             CCceeecCC-CcceEEEecccCceeEEEEEEeC-C--CCCCceEEEEeecCCCCCccCCCCCCCceEEEecCCCCCCeEE
Q 039218            6 EGLYLESDA-DEQLLIYLPFTQVVKLHSIVVKG-P--EEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPV   81 (135)
Q Consensus         6 ~~~~l~SD~-D~QLii~IpF~~~Vkl~sI~i~~-~--~~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~~~~~~~~~~   81 (135)
                      .+.|=+||. -++..|.+-|...|.|+.|.|.- +  +...|++|.+++=.   +|+++.   ...++++.+. .|  -+
T Consensus        24 ~~tyWQSdG~qphh~i~l~f~k~v~i~~l~i~~~~~DeSYtP~~I~V~~G~---~~~dL~---e~~~v~l~~p-~G--wv   94 (129)
T cd08159          24 YDTYWQSDGSQGSHWIRLFMKKDVLIRVLAIFVDMADSSYMPSLVVVYGGH---SPSDLR---ELKDVNIRPS-NG--WV   94 (129)
T ss_pred             CCccCCCCCCCCCEEEEEEEcCCcEEEEEEEEecCCCCCcCCcEEEEEecC---CHHHhh---eeEEEEecCC-Cc--eE
Confidence            456789984 44578999999999999999987 3  33899999999853   344443   3455666432 22  22


Q ss_pred             EccccccccccEEEEEEeCCCCCCceEEEEEEEEE
Q 039218           82 VLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALF  116 (135)
Q Consensus        82 ~Lr~~KFqnV~sLtif~~~n~~g~~~T~I~~I~l~  116 (135)
                      .|..-......-|.|.|..|+.++--|+|.-|.++
T Consensus        95 ~i~~~~~~~~~~iqI~I~~nhqnG~DthiRgikI~  129 (129)
T cd08159          95 ALLEDDTLKCPYIEIRIKRCRSDGIDTRIRGLRLL  129 (129)
T ss_pred             EEEcCCcEEEEEEEEEEHHhccCCccceeeEEEeC
Confidence            33222244567799999999878888999988764

This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f

>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase

Probab=95.32  E-value=0.12  Score=40.96  Aligned_cols=109  Identities=17%  Similarity=0.155  Sum_probs=71.3

Q ss_pred             CCceeecCCCcceEEEecccCceeEEEEEEeC-C---CCCCceEEEEeecCCCCCccCCCCCCCceEEEecCCCCCCeEE
Q 039218            6 EGLYLESDADEQLLIYLPFTQVVKLHSIVVKG-P---EEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPV   81 (135)
Q Consensus         6 ~~~~l~SD~D~QLii~IpF~~~Vkl~sI~i~~-~---~~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~~~~~~~~~~   81 (135)
                      .+.|=|||.-.-=.|+|-|..-|.|+.|.|-- .   +...|+.|.+++=..   +.++   ....++++.+ ..|-..+
T Consensus        56 ~~TyWQSDG~qpH~I~i~f~k~v~I~~l~iyvd~~~DeSYtPs~I~V~aG~~---~~dl---~e~~~v~l~~-p~GWv~i  128 (193)
T PF03256_consen   56 TETYWQSDGSQPHWITIQFHKRVIISSLSIYVDYKQDESYTPSKISVRAGNS---PHDL---QEVKTVELEE-PNGWVHI  128 (193)
T ss_dssp             TT--EE--SSSSEEEEEEEEEEEEE-EEEEEEEHHHHGGGSEEEEEEEEESS---TTT----EEEEEEEECC--EEEEEE
T ss_pred             hhHhhccCCCCCEEEEEEEcCCcEEEEEEEEEccCcCCCCCceEEEEEEeCC---cCce---EEEEEEEecC-CCccEEE
Confidence            45678998877789999999999999999865 2   448999999998532   2222   2245566643 2233666


Q ss_pred             Ecc--ccccccccEEEEEEeCCCCCCceEEEEEEEEEeEecc
Q 039218           82 VLK--FVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVE  121 (135)
Q Consensus        82 ~Lr--~~KFqnV~sLtif~~~n~~g~~~T~I~~I~l~G~~~~  121 (135)
                      +|.  ..++=.+..|.|.|..|+.++--|+|..|.++|-...
T Consensus       129 ~l~~~~~~~~r~~~iqI~I~~nhq~G~DthiR~iki~gp~~~  170 (193)
T PF03256_consen  129 PLLDNRGNPLRCFFIQIAILSNHQNGKDTHIRGIKIYGPRPS  170 (193)
T ss_dssp             E-BSTTTSBEEEEEEEEEEEEECCC-SS-EESEEEEEEE---
T ss_pred             EeCCCCCCcEEEEEEEEEEEecccCCCCCceeeEEEECCCCc
Confidence            665  3355566789999999987777899999999997665

The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.

>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination

Probab=95.29  E-value=0.45  Score=35.69  Aligned_cols=102  Identities=19%  Similarity=0.180  Sum_probs=69.1

Q ss_pred             CCceeecCCCc-ceEEEecccCceeEEEEEEeC-C--CCCCceEEEEeecCCCCCccCCCCCCCceEEEecCCCCCCeEE
Q 039218            6 EGLYLESDADE-QLLIYLPFTQVVKLHSIVVKG-P--EEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPV   81 (135)
Q Consensus         6 ~~~~l~SD~D~-QLii~IpF~~~Vkl~sI~i~~-~--~~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~~~~~~~~~~   81 (135)
                      .+.|=|||.-. +=.|+|-|..-|.|++|.|.. +  +...|++|.+++=..   |+++..   --++++.+...|  -+
T Consensus        25 ~~tyWQSDG~q~pH~I~i~f~k~v~i~~l~l~vd~~DeSYtP~~I~V~~G~~---~~dL~e---~~~v~v~~~~~g--~v   96 (131)
T cd08365          25 TSTYWQSDGSQGSHWIRLKMKPDVLVRHLSLAVDATDSSYMPQRVVVAGGRS---ASNLQE---LRDVNIPPSVTG--YV   96 (131)
T ss_pred             CCceEccCCCCCCEEEEEEEcCCcEEEEEEEEecCCCCCCCCcEEEEEecCC---HHHhee---EEEEEccCCCce--eE
Confidence            45688999655 589999999999999999987 3  348999999998642   444332   344444422111  11


Q ss_pred             EccccccccccEEEEEEeCCCCCCceEEEEEEEE
Q 039218           82 VLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIAL  115 (135)
Q Consensus        82 ~Lr~~KFqnV~sLtif~~~n~~g~~~T~I~~I~l  115 (135)
                      +|---.-....-|.|.|..|+.++--|+|.-|.+
T Consensus        97 ~ll~~~~~~~~~iqI~I~~nhqnG~DthiRgikI  130 (131)
T cd08365          97 TLLEDATISQPYIEIRIKRCRSDGIDTRIHGLRI  130 (131)
T ss_pred             EEccCCceeeEEEEEEEHHHccCCccceeeEEEe
Confidence            1111111234778999999987888899998876

This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te

>KOG2687 consensus Spindle pole body protein, contains UNC-84 domain [Cell cycle control, cell division, chromosome partitioning]

Probab=94.64  E-value=0.58  Score=41.27  Aligned_cols=93  Identities=14%  Similarity=0.327  Sum_probs=63.2

Q ss_pred             CcceEEEecccCceeEEEEEEeC------CC---CCCceEEEEeecCC---C----C---CccCCCCCCCceEEEecCCC
Q 039218           15 DEQLLIYLPFTQVVKLHSIVVKG------PE---EEGPKTVKLFSNRE---H----M---GFSNVNDFPPSDTAVLTPDN   75 (135)
Q Consensus        15 D~QLii~IpF~~~Vkl~sI~i~~------~~---~~~P~~iKlf~N~~---~----l---dFd~~~~~~p~Q~~~l~~~~   75 (135)
                      +.|==+.|-+-..|-+.+|.+.-      |+   .+|||...+|.=.+   .    |   -||  .+..+.|+|.+..+ 
T Consensus       301 Gsrg~v~V~La~~Iip~avTleHv~~sVspd~~~sSAPKdf~V~g~~~~~~~~~~LLG~ftYD--~d~~~~QtF~~q~~-  377 (414)
T KOG2687|consen  301 GSRGYVTVRLARFIIPSAVTLEHVPKSVSPDGNISSAPKDFDVFGSTQDCTEEEVLLGEFTYD--LDGSPIQTFSLQHD-  377 (414)
T ss_pred             CCceEEEEEecceEEeeeeeeecccceecCCCCcCcCCcceEEEeecccCCcCceeeEEEEEC--CCCCcceEEeccCC-
Confidence            34445667778889999998854      22   37999999997655   0    1   233  22366677776422 


Q ss_pred             CCCeEEEccccccccccEEEEEEeCCCCCCceEEEEEEEEEeEecc
Q 039218           76 LKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVE  121 (135)
Q Consensus        76 ~~~~~~~Lr~~KFqnV~sLtif~~~n~~g~~~T~I~~I~l~G~~~~  121 (135)
                                 -+.-++++-|=|.+|||....|-||++.+.|++..
T Consensus       378 -----------~~~~~~~V~l~~~SN~G~p~fTCiYR~RVhG~~~~  412 (414)
T KOG2687|consen  378 -----------TSAPFKTVELRFNSNHGHPKFTCIYRFRVHGRPVD  412 (414)
T ss_pred             -----------CccccceEEEEEecCCCCCCceEEEEEEEcCccCC
Confidence                       12334556677899995555999999999998654

>KOG3437 consensus Anaphase-promoting complex (APC), subunit 10 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.58  E-value=0.5  Score=37.41  Aligned_cols=106  Identities=22%  Similarity=0.315  Sum_probs=79.5

Q ss_pred             ceeecCCCcceEEEecccCceeEEEEEEeCC----CCCCceEEEEeecCCCCCccCCCCCCCceEEEec-CCCCCCeEEE
Q 039218            8 LYLESDADEQLLIYLPFTQVVKLHSIVVKGP----EEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLT-PDNLKGKPVV   82 (135)
Q Consensus         8 ~~l~SD~D~QLii~IpF~~~Vkl~sI~i~~~----~~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~-~~~~~~~~~~   82 (135)
                      .|-+||.-.=-.|+|-|..-|+|..+.|-..    ...+|.+|||+.   .-+|.|+..   .|..++. +..|  +-+|
T Consensus        49 tyWqSdG~~PH~i~I~F~K~~~I~~v~if~~f~~DeSYtPs~i~I~~---G~g~~dl~~---~~~~el~ep~GW--v~lp  120 (184)
T KOG3437|consen   49 TYWQSDGSQPHLINIQFHKRVDIQYVVIFLDFKQDESYTPSKIKIRA---GNGFNDLWE---IQSVELVEPKGW--VHLP  120 (184)
T ss_pred             HheecCCCCCeEEEEEEEeEEEEEEEEEEEEEecccccCceeEEEEe---cCChhheee---eeEEEEecCCce--EEEe
Confidence            4667887776788999999999999999772    448999999876   356777665   6777775 3333  4444


Q ss_pred             cc--ccccccccEEEEEEeCCCCCCceEEEEEEEEEeEecc
Q 039218           83 LK--FVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVE  121 (135)
Q Consensus        83 Lr--~~KFqnV~sLtif~~~n~~g~~~T~I~~I~l~G~~~~  121 (135)
                      +.  ..+=-.|..|.|-|..|+..+.-|.+-.|.+++-..+
T Consensus       121 ~~d~~~~~lr~~~iqi~i~~NHq~GkDthvR~iri~~p~~e  161 (184)
T KOG3437|consen  121 VLDNDDKPLRCFMIQIAILSNHQNGKDTHVRHIRIYAPSIE  161 (184)
T ss_pred             eccCCCCceEEEEEEEEeecccccCccceeEEEEEeccccc
Confidence            32  3455567889999999987677799999999998554

>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination

Probab=94.36  E-value=0.95  Score=34.01  Aligned_cols=102  Identities=18%  Similarity=0.257  Sum_probs=70.1

Q ss_pred             CceeecCCCc-ceEEEecccCceeEEEEEEeC-C-C-CCCceEEEEeecCCCCCccCCCCCCCceEEEecCCCCCCeEEE
Q 039218            7 GLYLESDADE-QLLIYLPFTQVVKLHSIVVKG-P-E-EEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPVV   82 (135)
Q Consensus         7 ~~~l~SD~D~-QLii~IpF~~~Vkl~sI~i~~-~-~-~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~~~~~~~~~~~   82 (135)
                      +.|=|||.-+ .=.|+|-|..-|.|+.|.|.. + + ...|++|.+.+=..   |.++.  +...+.++.+. .+ -...
T Consensus        25 ~tyWQSdG~q~pH~I~i~f~k~v~I~~l~i~v~~~DeSYtPs~I~V~~G~~---~~dL~--~e~~~V~~~~~-~g-~v~l   97 (131)
T cd08665          25 KTYWESNGSTGSHYINIHMHRGVVIRQLYMLVASEDSSYMPARVVVLGGDS---PSCIT--TELNAVNVSPT-AS-RVVL   97 (131)
T ss_pred             CceEccCCCCCCeEEEEEECCCcEEEEEEEEecCCCCCcCCeeEEEEecCC---HHHhh--heeEEEEccCC-cc-eEEE
Confidence            4688999864 789999999999999999987 4 3 38999999987532   33332  12334444331 11 1112


Q ss_pred             cccc-ccccccEEEEEEeCCCCCCceEEEEEEEEEe
Q 039218           83 LKFV-KFQNVRSLTIFIEDNQSDSEVTKVNKIALFG  117 (135)
Q Consensus        83 Lr~~-KFqnV~sLtif~~~n~~g~~~T~I~~I~l~G  117 (135)
                      |.-+ .|-  .-|.|.|.+|+.++--|+|..|.++|
T Consensus        98 l~~~~~~~--~~iqI~I~~nhqnG~DthIRgikI~G  131 (131)
T cd08665          98 LENMTRFW--PIIQIRIKRCQQGGIDTRVRGLEILG  131 (131)
T ss_pred             cccCcccc--eEEEEEEhhhcccCccceeeEEEecC
Confidence            3221 111  46899999999888889999999987

This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui

>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2)

Probab=92.43  E-value=3.2  Score=32.01  Aligned_cols=101  Identities=18%  Similarity=0.271  Sum_probs=70.5

Q ss_pred             cCCCceeecCCCc-ceEEEecccCceeEEEEEEeC-C--CCCCceEEEEeecCCCCCccCCCCCCCceEEEecCCCCCCe
Q 039218            4 EDEGLYLESDADE-QLLIYLPFTQVVKLHSIVVKG-P--EEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGK   79 (135)
Q Consensus         4 ~d~~~~l~SD~D~-QLii~IpF~~~Vkl~sI~i~~-~--~~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~~~~~~~~   79 (135)
                      .+.+.|=+||.-+ +=.|++-|..-|-|+++.|.. +  +...|++|.+++=   -+|+++   +...++++.+..   .
T Consensus        45 D~~~TYWQSdG~q~~HwI~l~~~~~v~I~~L~i~vd~~DeSY~Ps~I~V~~G---~~~~~L---~el~~V~i~~~~---~  115 (152)
T cd08664          45 DGSGSYWQSSGSQGKHWIRLELHPDVLIHSLKIIVDPADSSYMPSLVVVSGG---DSLNSL---KELKTINVNATD---T  115 (152)
T ss_pred             CCCCCeeccCCCCCceEEEEEECCCcEEEEEEEEecCCCCCcCCceEEEEec---CChhhh---heeEEEEcCCCC---c
Confidence            3445688998655 689999999999999999987 4  3389999999875   345554   334455554322   1


Q ss_pred             EEEc--cccccccccEEEEEEeCCCCCCceEEEEEEEE
Q 039218           80 PVVL--KFVKFQNVRSLTIFIEDNQSDSEVTKVNKIAL  115 (135)
Q Consensus        80 ~~~L--r~~KFqnV~sLtif~~~n~~g~~~T~I~~I~l  115 (135)
                      .+.|  ....|  ..-|.|.|..|+.++--|+|.-|.+
T Consensus       116 ~v~Ll~~~~~~--~~~IqI~I~~ch~~GiDt~IrglkI  151 (152)
T cd08664         116 LVTLLQDVKEY--YRYIEIAIKQCRNNGIDCKIHGLNI  151 (152)
T ss_pred             eEEeccCCCee--eEEEEEEhHhhhhCCCcceeeEEEe
Confidence            2222  22223  2578899999988888899998875

This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other develo

>COG5156 DOC1 Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]

Probab=91.01  E-value=1.2  Score=34.97  Aligned_cols=104  Identities=15%  Similarity=0.257  Sum_probs=73.0

Q ss_pred             ceeecCCCcceEEEecccCceeEEEEEEeC----CCCCCceEEEEeecCCCCCccCCCCCCCceEEEecCCCCCCeEEEc
Q 039218            8 LYLESDADEQLLIYLPFTQVVKLHSIVVKG----PEEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPVVL   83 (135)
Q Consensus         8 ~~l~SD~D~QLii~IpF~~~Vkl~sI~i~~----~~~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~~~~~~~~~~~L   83 (135)
                      .|-+||.-.--=|+|-|..-+.|+++.+--    .+..+|+.|++++   .+.|+|++..+..|..+  ++.    -+.|
T Consensus        53 tyWqsDg~qPH~i~I~F~kr~~I~~v~lfls~t~DeSYtPs~i~v~a---G~~~~D~r~~~~vev~e--p~G----wv~l  123 (189)
T COG5156          53 TYWQSDGVQPHSIQISFDKRRYIQSVQLFLSFTQDESYTPSKIGVRA---GLTREDVREISSVEVVE--PEG----WVTL  123 (189)
T ss_pred             hhhccCCCCCceEEEEEeEEEeeeeehhhhhhhcccccCcceeEEec---cCChhhheeEEEEEEEc--CCc----eEEE
Confidence            467898777778999998888888877754    2458999999987   47788888755444333  222    2445


Q ss_pred             cccccc-----cccEEEEEEeCCCCCCceEEEEEEEEEeEec
Q 039218           84 KFVKFQ-----NVRSLTIFIEDNQSDSEVTKVNKIALFGTTV  120 (135)
Q Consensus        84 r~~KFq-----nV~sLtif~~~n~~g~~~T~I~~I~l~G~~~  120 (135)
                      +++.|-     .|.-+-+.|..|...+.-|.+-.|.++-.+.
T Consensus       124 ~v~d~~~d~LL~c~~I~v~i~~NHq~GKDsHvR~ikiy~ps~  165 (189)
T COG5156         124 SVADKREDDLLKCIYILVVINSNHQEGKDSHVRHIKIYEPST  165 (189)
T ss_pred             EecccCcCCceeEEEEEEEEecCcccCcccceeeEEEeccCC
Confidence            666552     2566777888887666668888888876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	135
1xoy_A	161	Solution Structure Of At3g04780.1, An Arabidopsis O		4e-55
1wwy_A	171	Solution Structure Of The Duf1000 Domain Of A Thior		3e-21

>pdb|1XOY|A Chain A, Solution Structure Of At3g04780.1, An Arabidopsis Ortholog Of The C-Terminal Domain Of Human Thioredoxin-Like Protein Length = 161

Iteration: 1
 Score =  209 bits (532), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 100/119 (84%), Positives = 108/119 (90%)
Query: 1   GYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNV 60
           GYREDEGL LESDADEQLLIY+PF QV+KLHS  +KGPEEEGPKTVK FSN+EHM FSNV
Sbjct: 43  GYREDEGLNLESDADEQLLIYIPFNQVIKLHSFAIKGPEEEGPKTVKFFSNKEHMCFSNV 102
Query: 61  NDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTT 119
           NDFPPSDTA LT +NLKGKPVVLK+VKFQNVRSLTIFIE NQS SEVTKV KIAL+G+T
Sbjct: 103 NDFPPSDTAELTEENLKGKPVVLKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGST 161

>pdb|1WWY|A Chain A, Solution Structure Of The Duf1000 Domain Of A Thioredoxin-Li 1 Length = 171

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/124 (43%), Positives = 77/124 (62%), Gaps = 3/124 (2%)
Query: 9   YLESDADEQLLIYLPFTQVVKLHSIVVKGPEE-EGPKTVKLFSNR-EHMGFSNVNDFPPS 66
           +LESD DEQLLI + F Q VKL+S+  +GP+  +GPK VK+F N    M F       P+
Sbjct: 42  FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPT 101
Query: 67  DTAVLTPDNLKGKPVV-LKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVETTDM 125
               LT D++K   +V L++VKFQNV S+TIF++ NQ + E T+++     GT V+ T+M
Sbjct: 102 QALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPVQATNM 161
Query: 126 KGLK 129
              K
Sbjct: 162 NDFK 165

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	135
1xoy_A	161	Hypothetical protein AT3G04780.1; structural genom	2e-53
1wwy_A	171	Thioredoxin-like protein 1; structural genomics, h	5e-49

>1xoy_A Hypothetical protein AT3G04780.1; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: b.18.1.26 Length = 161

 Score =  164 bits (417), Expect = 2e-53
 Identities = 100/119 (84%), Positives = 108/119 (90%)

Query: 1   GYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNV 60
           GYREDEGL LESDADEQLLIY+PF QV+KLHS  +KGPEEEGPKTVK FSN+EHM FSNV
Sbjct: 43  GYREDEGLNLESDADEQLLIYIPFNQVIKLHSFAIKGPEEEGPKTVKFFSNKEHMCFSNV 102

Query: 61  NDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTT 119
           NDFPPSDTA LT +NLKGKPVVLK+VKFQNVRSLTIFIE NQS SEVTKV KIAL+G+T
Sbjct: 103 NDFPPSDTAELTEENLKGKPVVLKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGST 161

>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical protein, regulatory protei apoptosis, cancer; NMR {Homo sapiens} Length = 171

 Score =  153 bits (389), Expect = 5e-49
 Identities = 54/133 (40%), Positives = 77/133 (57%), Gaps = 3/133 (2%)

Query: 4   EDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEE-GPKTVKLFSNR-EHMGFSNVN 61
             +  +LESD DEQLLI + F Q VKL+S+  +GP+   GPK VK+F N    M F    
Sbjct: 37  RKDTTFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAE 96

Query: 62  DFPPSDTAVLTPDNLKGKPVV-LKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTV 120
              P+    LT D++K   +V L++VKFQNV S+TIF++ NQ + E T+++     GT V
Sbjct: 97  RSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPV 156

Query: 121 ETTDMKGLKKIED 133
           + T+M   K    
Sbjct: 157 QATNMNDFKSGPS 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	135
1wwy_A	171	Thioredoxin-like protein 1; structural genomics, h	100.0
1xoy_A	161	Hypothetical protein AT3G04780.1; structural genom	100.0
4dxt_A	198	SUN domain-containing protein 2; beta-sandwich, LI	96.65
1jhj_A	171	APC10; beta sandwich, jellyroll, cell cycle; 1.60A	95.68
1gqp_A	221	DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome,	94.91
2yc2_A	139	IFT25, intraflagellar transport protein 25; transp	88.72
1tvg_A	153	LOC51668 protein; cell cycle, structural genomics,	81.2

>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical protein, regulatory protei apoptosis, cancer; NMR {Homo sapiens}

Probab=100.00  E-value=5.4e-53  Score=325.70  Aligned_cols=130  Identities=41%  Similarity=0.638  Sum_probs=121.4

Q ss_pred             ccC-CCceeecCCCcceEEEecccCceeEEEEEEeCC-CCCCceEEEEeecC-CCCCccCCCCCCCceEEEecCCCC-CC
Q 039218            3 RED-EGLYLESDADEQLLIYLPFTQVVKLHSIVVKGP-EEEGPKTVKLFSNR-EHMGFSNVNDFPPSDTAVLTPDNL-KG   78 (135)
Q Consensus         3 R~d-~~~~l~SD~D~QLii~IpF~~~Vkl~sI~i~~~-~~~~P~~iKlf~N~-~~ldFd~~~~~~p~Q~~~l~~~~~-~~   78 (135)
                      |++ ...+|+||+||||||||||+++||||||+|+++ ++++|++||||+|+ ++||||+|++.+|+|+|+|+++++ ++
T Consensus        35 ~l~~~~~~leSD~DeQLli~IPFt~~VKl~Si~i~~~~~~~~Pk~iKlf~N~~~~ldFd~a~~~~p~Q~~eL~~~~~~~g  114 (171)
T 1wwy_A           35 CLRKDTTFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKED  114 (171)
T ss_dssp             TSSSSSCCBCCSSCSCCEEEEEEEEEEEEEEEEECCCSSSCCBCEEEEEESCSSCCCTTHHHHSCCSSCEECCTTTSSTT
T ss_pred             hhccCCCcCcCCCCceEEEEeecCCcEEEEEEEEECCCCCCCCcEEEEeecCCCCcChhhhccCCCceEEEcCCcccCCC
Confidence            344 457999999999999999999999999999996 56999999999999 689999999999999999998876 56


Q ss_pred             eEEEccccccccccEEEEEEeCCCCCCceEEEEEEEEEeEeccccCCCCceecc
Q 039218           79 KPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVETTDMKGLKKIE  132 (135)
Q Consensus        79 ~~~~Lr~~KFqnV~sLtif~~~n~~g~~~T~I~~I~l~G~~~~~t~m~~l~k~~  132 (135)
                      .+||||+||||||+||||||++||+|+|+|+|+||+|+|+++++|||++|||+.
T Consensus       115 ~~~~Lr~vkFqnV~sLtlf~~~n~~g~e~T~I~~I~l~Ge~~~~~~m~~~k~~~  168 (171)
T 1wwy_A          115 GIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPVQATNMNDFKSGP  168 (171)
T ss_dssp             CCEECCTTTCTTEEEEEEEECCBTTCCSSCCBCCEEEEEEESSCCSCCCCCCCC
T ss_pred             cEEEccceEEcccCEEEEEEecCCCCCccEEEEEEEEEeEecCcccHHHcccCC
Confidence            799999999999999999999999888999999999999999999999999985

>1xoy_A Hypothetical protein AT3G04780.1; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: b.18.1.26

Probab=100.00  E-value=3.1e-50  Score=307.65  Aligned_cols=118  Identities=84%  Similarity=1.235  Sum_probs=111.8

Q ss_pred             cccCCCceeecCCCcceEEEecccCceeEEEEEEeCCCCCCceEEEEeecCCCCCccCCCCCCCceEEEecCCCCCCeEE
Q 039218            2 YREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPV   81 (135)
Q Consensus         2 ~R~d~~~~l~SD~D~QLii~IpF~~~Vkl~sI~i~~~~~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~~~~~~~~~~   81 (135)
                      +|.++..+++||+||||||||||+++||||||+|+++++++|++||||+|||+|||++|++.+|+|+|+|+++++++.+|
T Consensus        44 ~r~~~~~~leSD~DeQLli~IPFt~~VKl~Si~i~~~~~~~Pk~iKlf~N~~~ldFd~a~~~~p~Q~~el~~~~~~g~~~  123 (161)
T 1xoy_A           44 YREDEGLNLESDADEQLLIYIPFNQVIKLHSFAIKGPEEEGPKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKGKPV  123 (161)
T ss_dssp             SCCTTTCCEECSSCSSEEEEEEEEEEECEEEEEEECCTTTSEEEEEEEESCSCCCHHHHTTSCCSEEECCCTTGGGTCCE
T ss_pred             hhccCCccCcCCCCceEEEEeecCCcEEEEEEEEECCCCCCCcEEEEeeCCCCCChhhhccCCCceEEECCCCcCCCcEE
Confidence            68888899999999999999999999999999999975599999999999999999999999999999999886555899


Q ss_pred             EccccccccccEEEEEEeCCCCCCceEEEEEEEEEeEe
Q 039218           82 VLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTT  119 (135)
Q Consensus        82 ~Lr~~KFqnV~sLtif~~~n~~g~~~T~I~~I~l~G~~  119 (135)
                      |||++|||||+||||||++||+|+|+|+|+||+|+|++
T Consensus       124 ~lr~vkFqnV~sLtlf~~~n~~g~e~T~I~~I~l~G~~  161 (161)
T 1xoy_A          124 VLKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGST  161 (161)
T ss_dssp             ECCTTTCSCEEEEEEEEEEETTCCSCCEESEEEEEECC
T ss_pred             eccceeEcccCEEEEEEecCCCCCccEEEEEEEEEecC
Confidence            99999999999999999999988899999999999985

>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex, structural protein; 2.22A {Homo sapiens} PDB: 3unp_A 4dxr_A* 4dxs_A* 4fi9_A

Probab=96.65  E-value=0.03  Score=43.22  Aligned_cols=90  Identities=16%  Similarity=0.283  Sum_probs=62.7

Q ss_pred             EEEecccCceeEEEEEEeC-C-----C---CCCceEEEEeecCCCC--------CccCCCCCCCceEEEecCCCCCCeEE
Q 039218           19 LIYLPFTQVVKLHSIVVKG-P-----E---EEGPKTVKLFSNREHM--------GFSNVNDFPPSDTAVLTPDNLKGKPV   81 (135)
Q Consensus        19 ii~IpF~~~Vkl~sI~i~~-~-----~---~~~P~~iKlf~N~~~l--------dFd~~~~~~p~Q~~~l~~~~~~~~~~   81 (135)
                      -+-|-+..++.+.+|.|-- +     +   ++|||.+.||.-...-        .|.=-.+..+.|+|.|....      
T Consensus        91 ~l~I~Ls~~I~~~~VtieHi~~~~sp~~~~~SAPKdf~V~g~~~~~~~~~~~Lg~f~Y~~~~~~~QtF~l~~~~------  164 (198)
T 4dxt_A           91 FAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAPT------  164 (198)
T ss_dssp             EEEEEEEEEEEEEEEEEECCCGGGSGGGCCTTSBCEEEEEEESSSSCCCCEEEEEEECCTTSCSEEEEECSSCC------
T ss_pred             eeeeecCCeEEEEEEEEEcCchhcccccCcCCCCcEEEEEEEcCCCCCCcEEEEEEEECCCCCcceEEEeCCCC------
Confidence            3456777999999999965 2     1   3899999999875421        11110112366777774321      


Q ss_pred             EccccccccccEEEEEEeCCCCCCceEEEEEEEEEeEec
Q 039218           82 VLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTV  120 (135)
Q Consensus        82 ~Lr~~KFqnV~sLtif~~~n~~g~~~T~I~~I~l~G~~~  120 (135)
                            =.-++.+.|-|.+|||..+.|-||++.+.|++.
T Consensus       165 ------~~~~~~V~l~i~SN~G~~~~TClYr~RVhG~~~  197 (198)
T 4dxt_A          165 ------MATYQVVELRILTNWGHPEYTCIYRFRVHGEPA  197 (198)
T ss_dssp             ------SCCEEEEEEEECCBSSCSSEEEECEEEEEEECC
T ss_pred             ------CcceeEEEEEEECCCCCCCcEEEEEEEEcCEeC
Confidence                  124678888999999666899999999999974

>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9

Probab=95.68  E-value=0.044  Score=41.59  Aligned_cols=108  Identities=16%  Similarity=0.185  Sum_probs=76.4

Q ss_pred             CCceeecCCCcceEEEecccCceeEEEEEEeC-C---CCCCceEEEEeecCCCCCccCCCCCCCceEEEecCCCCCCeEE
Q 039218            6 EGLYLESDADEQLLIYLPFTQVVKLHSIVVKG-P---EEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPV   81 (135)
Q Consensus         6 ~~~~l~SD~D~QLii~IpF~~~Vkl~sI~i~~-~---~~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~~~~~~~~~~   81 (135)
                      .+.|-+||.-..=.|.|-|...|.|+.|.|.. +   +...|+.|.+++=..   +.++   ....++++.+ ..|-..+
T Consensus        49 ~~TyWqSdg~qpH~I~i~f~k~v~i~~l~i~vd~~~DeSYtPs~I~v~aG~~---~~dL---~ei~~v~l~~-p~Gwv~i  121 (171)
T 1jhj_A           49 LETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNN---FHNL---QEIRQLELVE-PSGWIHV  121 (171)
T ss_dssp             TTCCEECCSSSSEEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEESS---TTSC---EEEEEEECSS-CEEEEEE
T ss_pred             CCeeEccCCCCCeEEEEEECCCceEEEEEEEECCCCCCCCCcEEEEEEEeCC---cccc---eeEEEEEccC-CCEEEEE
Confidence            44688999777778999999999999999977 2   348999999997533   3333   2245566643 2333556


Q ss_pred             Ecccc--ccccccEEEEEEeCCCCCCceEEEEEEEEEeEec
Q 039218           82 VLKFV--KFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTV  120 (135)
Q Consensus        82 ~Lr~~--KFqnV~sLtif~~~n~~g~~~T~I~~I~l~G~~~  120 (135)
                      +++-.  +-..+.-|.|.|..|+.++--|+|..|.++|...
T Consensus       122 ~l~~~~~~~~~~~~IQI~I~~nhqnG~DthIR~ikI~G~~~  162 (171)
T 1jhj_A          122 PLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVE  162 (171)
T ss_dssp             ECBCTTSSBEEEEEEEEEEEEEGGGCSSCEECEEEEEEEC-
T ss_pred             EeccCCCCceeEEEEEEEEeccCCCCCccEEEEEEEEecCC
Confidence            65321  2334458999999998666669999999999843

>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination, E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A {Saccharomyces cerevisiae} SCOP: b.18.1.9

Probab=94.91  E-value=0.055  Score=42.78  Aligned_cols=108  Identities=12%  Similarity=0.134  Sum_probs=74.9

Q ss_pred             CceeecCCCcceEEEecccCceeEEEEEEeC-C---CCCCceEEEEeecCCCCCccCCCCCCCceEEEecCCCCCCeEEE
Q 039218            7 GLYLESDADEQLLIYLPFTQVVKLHSIVVKG-P---EEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPVV   82 (135)
Q Consensus         7 ~~~l~SD~D~QLii~IpF~~~Vkl~sI~i~~-~---~~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~~~~~~~~~~~   82 (135)
                      +.|-|||.-.-=.|+|-|...|.|+.|.|-- .   +...|+.|.+.+=..   +.++.   ...++++.+ ..|-+.++
T Consensus        81 ~TyWQSDG~qPH~ItI~f~k~v~I~~L~iyvD~~~DeSYtPs~I~V~aG~~---~~dL~---e~~~v~l~~-p~GWv~i~  153 (221)
T 1gqp_A           81 DTFWQSDGGQPHQLDIMFSKRMDICVMAIFFSMIADESYAPSLVKVYAGHS---PSDAR---FYKMLEVRN-VNGWVALR  153 (221)
T ss_dssp             TCCEECCSSSSEEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEESS---TTTCE---EEEEEEEEE-CEEEEEEC
T ss_pred             cceeccCCCCCeEEEEEEcCCceEEEEEEEECCCCCCCCCCEEEEEEEeCC---cCcce---EEEEEEecC-CCEEEEEE
Confidence            4688999888889999999999999999977 2   348999999988633   22222   234555542 22224455


Q ss_pred             cccc----ccccccEEEEEEeCCCCCCceEEEEEEEEEeEecc
Q 039218           83 LKFV----KFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTTVE  121 (135)
Q Consensus        83 Lr~~----KFqnV~sLtif~~~n~~g~~~T~I~~I~l~G~~~~  121 (135)
                      |.-.    .+..+.-|.|.|..|+.++--|+|..|.++|-..+
T Consensus       154 l~d~~~~~~~l~~~~IQI~I~~nhqnGrDThIRqIkI~Gp~~~  196 (221)
T 1gqp_A          154 FLDNREDDQLLKCQFIRLLFPVNHENGKDTHLRGIRLYVPSNE  196 (221)
T ss_dssp             CC--------EEEEEEEEEEEEESTTCSSCEESCEEEEEEC--
T ss_pred             ccCCCCCCCeeEEEEEEEEEeeccCCCCccEEEEEEEEccCCc
Confidence            4321    24455689999999987777799999999998543

>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A

Probab=88.72  E-value=1.1  Score=31.79  Aligned_cols=84  Identities=12%  Similarity=0.214  Sum_probs=53.4

Q ss_pred             EEecccCceeEEEEEEeCCCCCCceEEEEeecCCC--CCccCCCCCCCceEEEecCCC--CCCeEEEccccccccccEEE
Q 039218           20 IYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREH--MGFSNVNDFPPSDTAVLTPDN--LKGKPVVLKFVKFQNVRSLT   95 (135)
Q Consensus        20 i~IpF~~~Vkl~sI~i~~~~~~~P~~iKlf~N~~~--ldFd~~~~~~p~Q~~~l~~~~--~~~~~~~Lr~~KFqnV~sLt   95 (135)
                      |-|-|.++++|..|.|..   ..++.+.+++...+  -+|..+.      +.++.+..  .....++++..    ++-|-
T Consensus        51 i~I~~~~~~~is~~~i~~---~~~k~~~ie~s~~~~p~~w~~i~------~~~f~~~~~~~q~~~f~~~~~----a~~lr  117 (139)
T 2yc2_A           51 FVLRLESCIRVSKITTLS---LNVRKLAVEKCDQDKPDQFEKVF------EVELANRGDRLQTEVHQVNIR----AKYLK  117 (139)
T ss_dssp             EEEEEEEEEEEEEEEEEE---ESEEEEEEEEECSSSCCCCEEEE------EEECCCC--CCEEEEEEEEEE----EEEEE
T ss_pred             EEEECCCceEEEEEEEEe---cCCcEEEEEEecCCCCCceEEEE------EEEeecCCCCceEEEccCCCc----EEEEE
Confidence            346678999999999984   24899999987654  4665542      12222111  00122332221    55688


Q ss_pred             EEEeCCCCCCceEEEEEEEEEeE
Q 039218           96 IFIEDNQSDSEVTKVNKIALFGT  118 (135)
Q Consensus        96 if~~~n~~g~~~T~I~~I~l~G~  118 (135)
                      |.|.++++ . -+.||.|.+.|+
T Consensus       118 l~i~s~~d-~-f~~iy~~~v~G~  138 (139)
T 2yc2_A          118 FILLQGHG-E-FATVNRVSVVGG  138 (139)
T ss_dssp             EEEEEESS-S-CCEEEEEEEEEC
T ss_pred             EEEEeccC-c-eEEEEEEEEEec
Confidence            88888883 3 699999999996

>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A

Probab=81.20  E-value=13  Score=26.88  Aligned_cols=97  Identities=15%  Similarity=0.167  Sum_probs=57.2

Q ss_pred             eeecCCCcceEEEecccCceeEEEEEEeCCCCCCceEEEEeecCCCC--CccCCCCCCCceEEEecCCCCCCeEEEcccc
Q 039218            9 YLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHM--GFSNVNDFPPSDTAVLTPDNLKGKPVVLKFV   86 (135)
Q Consensus         9 ~l~SD~D~QLii~IpF~~~Vkl~sI~i~~~~~~~P~~iKlf~N~~~l--dFd~~~~~~p~Q~~~l~~~~~~~~~~~Lr~~   86 (135)
                      |......+|- |-|-|.++++|..|.|..   ..++.++|++...+-  +|..+.      +.++.... +.    ++..
T Consensus        49 W~t~g~~Pq~-i~Idf~k~~~is~~~i~~---~~vk~~~ie~s~d~~p~~w~~i~------e~ef~~~~-n~----~Q~~  113 (153)
T 1tvg_A           49 WTTTGMFPQE-FIICFHKHVRIERLVIQS---YFVQTLKIEKSTSKEPVDFEQWI------EKDLVHTE-GQ----LQNE  113 (153)
T ss_dssp             EECCSCSSEE-EEEEEEEEEEEEEEEEEE---ESEEEEEEEEECSSSSCCCEEEE------EEECCCCT-TC----CEEE
T ss_pred             EECCCCCCcE-EEEECCCceEEEEEEEEe---cCCEEEEEEEECCCCCcceEEeE------EEEecCCC-Cc----EEEE
Confidence            4432344542 345667999999999984   248889998775443  554431      12222111 00    1111


Q ss_pred             ccc---cccEEEEEEeCCCCCCceEEEEEEEEEeEeccc
Q 039218           87 KFQ---NVRSLTIFIEDNQSDSEVTKVNKIALFGTTVET  122 (135)
Q Consensus        87 KFq---nV~sLtif~~~n~~g~~~T~I~~I~l~G~~~~~  122 (135)
                      +|+   .++-|-|-|.++.  +.-.+||.|.+.|+....
T Consensus       114 ~~~~~~~a~~lRl~i~s~~--d~fv~Iy~l~v~G~~~~~  150 (153)
T 1tvg_A          114 EIVAHGSATYLRFIIVSAF--DHFASVHSVSAEGTVVSN  150 (153)
T ss_dssp             EECCCEEEEEEEEEEEEES--SSCCEEEEEEEEEEEEC-
T ss_pred             EcCCCceeEEEEEEEEccc--ccEEEEEEEEEEEEEccc
Confidence            122   3566777888777  335999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	135
d1xoya_	161	b.18.1.26 (A:) Hypothetical protein AT3g04780/F7O1	1e-54

>d1xoya_ b.18.1.26 (A:) Hypothetical protein AT3g04780/F7O18_27 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 161

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Hypothetical protein AT3g04780/F7O18 27
domain: Hypothetical protein AT3g04780/F7O18 27
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  166 bits (422), Expect = 1e-54
 Identities = 100/119 (84%), Positives = 108/119 (90%)

Query: 1   GYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNV 60
           GYREDEGL LESDADEQLLIY+PF QV+KLHS  +KGPEEEGPKTVK FSN+EHM FSNV
Sbjct: 43  GYREDEGLNLESDADEQLLIYIPFNQVIKLHSFAIKGPEEEGPKTVKFFSNKEHMCFSNV 102

Query: 61  NDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTT 119
           NDFPPSDTA LT +NLKGKPVVLK+VKFQNVRSLTIFIE NQS SEVTKV KIAL+G+T
Sbjct: 103 NDFPPSDTAELTEENLKGKPVVLKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGST 161

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	135
d1xoya_	161	Hypothetical protein AT3g04780/F7O18_27 {Thale cre	100.0
d1jhja_	161	APC10/DOC1 subunit of the anaphase-promoting compl	94.71
d1gqpa_	194	APC10/DOC1 subunit of the anaphase-promoting compl	92.93
d1w8oa2	142	Sialidase, C-terminal domain {Micromonospora virid	90.58

>d1xoya_ b.18.1.26 (A:) Hypothetical protein AT3g04780/F7O18_27 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Hypothetical protein AT3g04780/F7O18 27
domain: Hypothetical protein AT3g04780/F7O18 27
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=5.7e-50  Score=304.40  Aligned_cols=119  Identities=84%  Similarity=1.243  Sum_probs=114.6

Q ss_pred             CcccCCCceeecCCCcceEEEecccCceeEEEEEEeCCCCCCceEEEEeecCCCCCccCCCCCCCceEEEecCCCCCCeE
Q 039218            1 GYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKP   80 (135)
Q Consensus         1 ~~R~d~~~~l~SD~D~QLii~IpF~~~Vkl~sI~i~~~~~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~~~~~~~~~   80 (135)
                      +.|.+...+|+||+|+||||||||+++||||||+|+++++++|++||||+|+|+|||++|++.+|+|+++|.++++++.+
T Consensus        43 ~~r~~~~~~l~SD~D~QLii~IpF~~~Vkl~si~i~~~~~~~Pk~iklf~N~~~idF~~a~~~~p~q~iel~~~~~~~~~  122 (161)
T d1xoya_          43 GYREDEGLNLESDADEQLLIYIPFNQVIKLHSFAIKGPEEEGPKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKGKP  122 (161)
T ss_dssp             TSCCTTTCCEECSSCSSEEEEEEEEEEECEEEEEEECCTTTSEEEEEEEESCSCCCHHHHTTSCCSEEECCCTTGGGTCC
T ss_pred             ccccCCCceEecCCChheEEEeecCCceEEEEEEEeCCCCCCCcEEEEEeCCCcCCcchhhhCCccceEEeCCccCCceE
Confidence            46889999999999999999999999999999999999889999999999999999999999999999999998888899


Q ss_pred             EEccccccccccEEEEEEeCCCCCCceEEEEEEEEEeEe
Q 039218           81 VVLKFVKFQNVRSLTIFIEDNQSDSEVTKVNKIALFGTT  119 (135)
Q Consensus        81 ~~Lr~~KFqnV~sLtif~~~n~~g~~~T~I~~I~l~G~~  119 (135)
                      |+||++|||||++|||||++|++|+|.|+|+||+|+|++
T Consensus       123 ~~L~~~kFqnV~sLtif~~~N~~g~e~T~I~~I~l~Ges  161 (161)
T d1xoya_         123 VVLKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGST  161 (161)
T ss_dssp             EECCTTTCSCEEEEEEEEEEETTCCSCCEESEEEEEECC
T ss_pred             EeecceeeccccEEEEEEeCCCCCCceEEEEEEEEEecC
Confidence            999999999999999999999988899999999999984

>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: APC10/DOC1 subunit of the anaphase-promoting complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.044  Score=38.46  Aligned_cols=105  Identities=13%  Similarity=0.183  Sum_probs=68.6

Q ss_pred             CCceeecCCCcceEEEecccCceeEEEEEEeC--C--CCCCceEEEEeecCCCCCccCCCCCCCceEEEecCCCCCCeEE
Q 039218            6 EGLYLESDADEQLLIYLPFTQVVKLHSIVVKG--P--EEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPV   81 (135)
Q Consensus         6 ~~~~l~SD~D~QLii~IpF~~~Vkl~sI~i~~--~--~~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~~~~~~~~~~   81 (135)
                      ...+=+|+....--|.|-|..++.|.+|.|.-  .  ....|+.++||.-...=+|..+      .+.++.. ..+....
T Consensus        49 ~~T~W~S~~~~ph~I~idl~~~~~i~~i~i~~~~~~d~s~~p~~~~i~~s~d~~~w~~v------~~~~~~~-~~g~~~~  121 (161)
T d1jhja_          49 LETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEI------RQLELVE-PSGWIHV  121 (161)
T ss_dssp             TTCCEECCSSSSEEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEESSTTSCEEE------EEEECSS-CEEEEEE
T ss_pred             CCceeecCCCCCEEEEEEcCCCeEEEEEEEEecCCCCcCCCcEEEEEEEcCCcCCceeE------EEEEecC-CCCceEE
Confidence            34455787665567999999999999999864  2  3478999999995433333332      2233321 1123455


Q ss_pred             Eccccccccc--cEEEEEEeCCCCCCceEEEEEEEEEe
Q 039218           82 VLKFVKFQNV--RSLTIFIEDNQSDSEVTKVNKIALFG  117 (135)
Q Consensus        82 ~Lr~~KFqnV--~sLtif~~~n~~g~~~T~I~~I~l~G  117 (135)
                      ++....|..+  .-|-|-|.+|+.++.-|+|..|.++|
T Consensus       122 ~~~~~~~~~~~~ryiri~i~~n~~~G~D~~Ir~i~V~G  159 (161)
T d1jhja_         122 PLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYT  159 (161)
T ss_dssp             ECBCTTSSBEEEEEEEEEEEEEGGGCSSCEECEEEEEE
T ss_pred             EeeccCCCcEEEEEEEEEEeecccCCcccEEEEEEEEe
Confidence            5665556555  34667777776455558999999999

>d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: APC10/DOC1 subunit of the anaphase-promoting complex
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.93  E-value=0.047  Score=39.96  Aligned_cols=105  Identities=10%  Similarity=0.130  Sum_probs=64.5

Q ss_pred             CceeecCCCcceEEEecccCceeEEEEEEeCC----CCCCceEEEEeecCCCCCccCCCCCCCceEEEecCCCCCCeEEE
Q 039218            7 GLYLESDADEQLLIYLPFTQVVKLHSIVVKGP----EEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPVV   82 (135)
Q Consensus         7 ~~~l~SD~D~QLii~IpF~~~Vkl~sI~i~~~----~~~~P~~iKlf~N~~~ldFd~~~~~~p~Q~~~l~~~~~~~~~~~   82 (135)
                      +.+=+|+.-..=-|.|-|..++.|++|.|.-.    ....|+.+++++-...-++.++.      +.++.+ ..|...++
T Consensus        81 ~T~W~S~~~~ph~i~idl~~~~~i~~i~i~~~~~~d~sy~p~~~~i~~s~d~~~w~~v~------t~~~~~-~~Gwv~i~  153 (194)
T d1gqpa_          81 DTFWQSDGGQPHQLDIMFSKRMDICVMAIFFSMIADESYAPSLVKVYAGHSPSDARFYK------MLEVRN-VNGWVALR  153 (194)
T ss_dssp             TCCEECCSSSSEEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEESSTTTCEEEE------EEEEEE-CEEEEEEC
T ss_pred             cceeccCCCCCEEEEEECCCCcEEEEEEEEecccccccCCceEEEEEEeCCcCCceEEE------EEEecC-CCceEEEE
Confidence            34556764334478899999999999988542    34789999999864433444332      222221 11123333


Q ss_pred             cc--cc--ccccccEEEEEEeCCCCCCceEEEEEEEEEeE
Q 039218           83 LK--FV--KFQNVRSLTIFIEDNQSDSEVTKVNKIALFGT  118 (135)
Q Consensus        83 Lr--~~--KFqnV~sLtif~~~n~~g~~~T~I~~I~l~G~  118 (135)
                      +.  ..  +--++.-|-|.|..|+..+.-|+|..|.++|-
T Consensus       154 l~~~~~~~~pv~aryIri~i~~nhqnGkDt~IR~irv~Gp  193 (194)
T d1gqpa_         154 FLDNREDDQLLKCQFIRLLFPVNHENGKDTHLRGIRLYVP  193 (194)
T ss_dssp             CC--------EEEEEEEEEEEEESTTCSSCEESCEEEEEE
T ss_pred             cccCcccCCeEEEEEEEEEEEecccCCcccEEEeeEEeCC
Confidence            31  11  22244567788888865555689999999995

>d1w8oa2 b.18.1.1 (A:506-647) Sialidase, C-terminal domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Galactose-binding domain
domain: Sialidase, C-terminal domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=90.58  E-value=1.3  Score=28.38  Aligned_cols=87  Identities=9%  Similarity=0.154  Sum_probs=51.9

Q ss_pred             ceEEEecccCceeEEEEEEeCC---CCCCceEEEEeecCCCCCccCC------CCCCCceEEEecCCCCCCeEEEccccc
Q 039218           17 QLLIYLPFTQVVKLHSIVVKGP---EEEGPKTVKLFSNREHMGFSNV------NDFPPSDTAVLTPDNLKGKPVVLKFVK   87 (135)
Q Consensus        17 QLii~IpF~~~Vkl~sI~i~~~---~~~~P~~iKlf~N~~~ldFd~~------~~~~p~Q~~~l~~~~~~~~~~~Lr~~K   87 (135)
                      -.-|.|-|.+++.|.+|.|...   ....|+.++|+.-...-.+..+      ......+.+.+.       ....|++|
T Consensus        46 ~~wi~idl~~~~~v~~i~i~~~~~~~~~~~~~~~i~~S~dg~~w~~~~~~~~~~~~~~~~~~~~~-------~~~aryvR  118 (142)
T d1w8oa2          46 PHRISLDLGGTHTISGLQYTRRQNSANEQVADYEIYTSLNGTTWDGPVASGRFTTSLAPQRAVFP-------ARDARYIR  118 (142)
T ss_dssp             CEEEEEEEEEEEEEEEEEEEECSSCSTTCBCEEEEEEESSSSSCEEEEEEEECCSCSSCEEEEEE-------EEEEEEEE
T ss_pred             cEEEEEECCCeEEeeEEEEECccccCcCCceeEEEEEecCCCceEEEEEeeecCCCCceEEEecC-------ceEEEEEE
Confidence            3357888999999999999752   3356999999995333322221      111122222221       11223333


Q ss_pred             cccccEEEEEEeCCCCCCceEEEEEEEEEeE
Q 039218           88 FQNVRSLTIFIEDNQSDSEVTKVNKIALFGT  118 (135)
Q Consensus        88 FqnV~sLtif~~~n~~g~~~T~I~~I~l~G~  118 (135)
                              |-+.++.++.....|.-|.|+|+
T Consensus       119 --------l~~~~~~~~~~~~~i~Ei~v~G~  141 (142)
T d1w8oa2         119 --------LVALSEQTGHKYAAVAELEVEGQ  141 (142)
T ss_dssp             --------EEECCBTTSCSCCEEEEEEEEEC
T ss_pred             --------EEEEecCCCCceEEEEEEEEEEE
Confidence                    44555664555689999999996