Citrus Sinensis ID: 039226

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
MEQVHKHVANPQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSEMENEPAECSSLFVESMKWMQSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDKCFN
Secondary Structure (PSIPRED)
cccccccccccccEEEcccccccccccccEEEcccccccHHHHHHcccccccccccccEEEEccccccHHHHccccccEEEccccccccccEEccccccccccEEccEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEHHHHHHHHEcccccccccccccccHHHccccccccccccccccEEEccHHHHHHHHccccccEEEccccccEEcEEEccccEcccccEEcccEEEcHccHccccc
Coil and Loop (DISEMBL)
meqvhkhvanpqaiyrcKKCRRLVAseenivpheqgkgeqcfkrkkrsemenepaeCSSLFVESMKWMQSVQEGfvgeklqcmgckarlgsfnwaglqcscgawatpafqlhksrldkcfn
Flexible Loop (DISEMBL)
meqvhkhvanpqaiyrckKCRRLVASeenivpheqgkgeqcfkrkkrsemenePAECSSLFVESMKWMQSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDKCFN
Low Complexity Region (SEG)
MEQVHKHVANPQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSEMENEPAECSSLFVESMKWMQSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDKCFN
Disordered region (IsUnstruct)
***********QAIYRCKKCRRLVA*********************************SLFVESMKWMQSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHK********
Disordered Region (DISOPRED)
***************RCKKCRRLVASEENIV*************************CSSLFVESMKWMQSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDKC**
Disordered Region (DISEMBL)
MEQVHKHVANPQAIYRCKKCRRLVASEENIVPH************************SSLFVESMKWMQSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDKCFN
Disordered Region (DISPRO)
********ANPQAIYRCKKCRRLVASEENIVPH**********************ECSSLFVESMKWMQSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLD**FN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQVHKHVANPQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSEMENEPAECSSLFVESMKWMQSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDKCFN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
Q9UNI6	340	Dual specificity protein	yes	no	0.884	0.314	0.450	5e-23
Q9D0T2	339	Dual specificity protein	yes	no	0.867	0.309	0.431	8e-23
Q9JIM4	339	Dual specificity protein	yes	no	0.876	0.312	0.427	1e-22
Q54T76	394	Probable dual specificity	yes	no	0.859	0.263	0.347	4e-15
Q02256	364	Tyrosine-protein phosphat	yes	no	0.851	0.282	0.353	2e-14
O13632	330	Tyrosine-protein phosphat	yes	no	0.752	0.275	0.359	3e-13

>sp|Q9UNI6|DUS12_HUMAN Dual specificity protein phosphatase 12 OS=Homo sapiens GN=DUSP12 PE=1 SV=1

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/111 (45%), Positives = 71/111 (63%), Gaps = 4/111 (3%)

Query: 12  QAIYRCKKCRRLVASEENIVPHEQGKGEQCF--KRKKRSEM--ENEPAECSSLFVESMKW 67
           + +Y+C+KCRR +    +I+ H +G G   F  KR   S M      A+C+S F+E ++W
Sbjct: 216 EVLYKCRKCRRSLFRSSSILDHREGSGPIAFAHKRMTPSSMLTTGRQAQCTSYFIEPVQW 275

Query: 68  MQSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDK 118
           M+S   G +  +L C  C A+LGSFNW G QCSCG W TPAFQ+HK+R+D+
Sbjct: 276 MESALLGVMDGQLLCPKCSAKLGSFNWYGEQCSCGRWITPAFQIHKNRVDE 326

Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 4EC: 8

>sp|Q9D0T2|DUS12_MOUSE Dual specificity protein phosphatase 12 OS=Mus musculus GN=Dusp12 PE=2 SV=1

 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 4/109 (3%)

Query: 14  IYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSE----MENEPAECSSLFVESMKWMQ 69
           +Y+C+KCRR +    +I+ H +G G   F  K+ +          A+C+S F+E ++WM+
Sbjct: 217 LYKCRKCRRSLFRHSSILGHSEGSGPIAFAHKRTAPSSVLTTGSQAQCTSYFIEPVQWME 276

Query: 70  SVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDK 118
           S   G +  +L C  C A+LGSFNW G QCSCG W TPAFQ+HK+R+D+
Sbjct: 277 STLLGVMDGQLLCPKCSAKLGSFNWYGEQCSCGRWITPAFQIHKNRVDE 325

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|Q9JIM4|DUS12_RAT Dual specificity protein phosphatase 12 OS=Rattus norvegicus GN=Dusp12 PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 68/110 (61%), Gaps = 4/110 (3%)

Query: 14  IYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSE----MENEPAECSSLFVESMKWMQ 69
           +Y+C+KCRR +    +I+ H +G G   F  K+            A+C+S F+E ++WM+
Sbjct: 217 LYKCRKCRRSLFRRSSILDHSEGSGPVAFAHKRTGLSSVLTTGNQAQCTSYFIEPVQWME 276

Query: 70  SVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDKC 119
           S   G +  +L C  C A+LGSFNW G QCSCG W TPAFQ+HK+R+D+ 
Sbjct: 277 SALLGVMDGQLLCPKCSAKLGSFNWYGEQCSCGRWITPAFQIHKNRVDEV 326

Seems to dephosphorylate glucokinase.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|Q54T76|DUSP4_DICDI Probable dual specificity protein phosphatase DDB_G0281963 OS=Dictyostelium discoideum GN=DDB_G0281963 PE=3 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 68/118 (57%), Gaps = 14/118 (11%)

Query: 15  YRCKKCRRLVASEENIVPHEQGKGEQCFKRKKR-------------SEMENE-PAECSSL 60
           Y C+KC + +  + +I+ HEQG+G+  FK  KR              ++E++    C+S 
Sbjct: 272 YSCRKCSKDLFLDFDILDHEQGQGQTSFKWNKRDNTTCNKSVGANGEQIEDQNKVICTSY 331

Query: 61  FVESMKWMQSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDK 118
           F+  +++  S     +  KL C  C  +LGS++W+G QCSCGAW  P+FQ+ K+R+D+
Sbjct: 332 FISEIEFSLSQTYSGMEGKLFCPSCNEKLGSWSWSGEQCSCGAWIAPSFQIPKTRVDE 389

Has a dual specificity toward Ser/Thr and Tyr-containing proteins.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|Q02256|PVH1_YEAST Tyrosine-protein phosphatase YVH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YVH1 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 10/113 (8%)

Query: 16  RCKKCRRLVASEENIVPHEQGKGEQC----FKRKKRS----EMENEPAECSSLFVESMKW 67
           RCKKCR  +A   + + H+    E       KR   S    +++   A CS  F+E +KW
Sbjct: 231 RCKKCRTKLALSTSFIAHDPPSKESSEGHFIKRAANSHRIIDIQESQANCSHFFIEPLKW 290

Query: 68  MQSVQEGF--VGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDK 118
           MQ   +G   +  K  C GC +++G +NW G +CSCG W  PA  L  S++D+
Sbjct: 291 MQPELQGKQELEGKFSCPGCSSKVGGYNWKGSRCSCGKWVIPAIHLQTSKVDQ 343

May be directly involved in signal transduction and/or cell cycle regulation. It is necessary for maintaining growth rate or spore germination. Could show both activity toward tyrosine-protein phosphate as well as with serine-protein phosphate.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|O13632|PVH1_SCHPO Tyrosine-protein phosphatase yvh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=yvh1 PE=3 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 12/103 (11%)

Query: 16  RCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSEMENEPAECSSLFVESMKWMQ-SVQEG 74
           RCKKCR ++AS + +V HE  K E  +   +          C+  F+E ++WMQ  ++ G
Sbjct: 233 RCKKCRFVLASSDYLVSHE-PKDENNYSHTR----------CTHYFLEPIRWMQPELELG 281

Query: 75  FVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLD 117
            +  +  C  C +++GS+ W GLQCSC  W  PA  + +SR+D
Sbjct: 282 NLEGRFDCPKCNSKIGSYKWQGLQCSCLQWVCPALSILQSRVD 324

May be directly involved in signal transduction and/or cell cycle regulation. It is necessary for maintaining growth rate or spore germination. Could show both activity toward tyrosine-protein phosphate as well as with serine-protein phosphate.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
297745307	216	unnamed protein product [Vitis vinifera]	0.900	0.504	0.756	2e-44
255585423	145	conserved hypothetical protein [Ricinus	0.925	0.772	0.739	3e-44
225454258	137	PREDICTED: dual specificity protein phos	0.900	0.795	0.756	6e-44
388492020	129	unknown [Lotus japonicus]	0.917	0.860	0.739	4e-43
147777648	137	hypothetical protein VITISV_019152 [Viti	0.900	0.795	0.747	1e-42
358249200	130	uncharacterized protein LOC100788597 [Gl	0.925	0.861	0.715	1e-41
449509039	129	PREDICTED: dual specificity protein phos	0.909	0.852	0.684	6e-41
449462651	129	PREDICTED: dual specificity protein phos	0.909	0.852	0.675	1e-40
356527352	130	PREDICTED: dual specificity protein phos	0.966	0.9	0.669	5e-40
224079099	145	predicted protein [Populus trichocarpa]	0.900	0.751	0.700	7e-40

>gi|297745307|emb|CBI40387.3| unnamed protein product [Vitis vinifera]

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/111 (75%), Positives = 98/111 (88%), Gaps = 2/111 (1%)

Query: 11  PQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSE--MENEPAECSSLFVESMKWM 68
           PQ IYRCK+CRR+VA++ENIVPHE+G+GE+CFK +KRS    E EP+ECSS+FVE MKWM
Sbjct: 104 PQVIYRCKRCRRIVAAQENIVPHERGQGEKCFKWRKRSGDLTEKEPSECSSIFVEPMKWM 163

Query: 69  QSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDKC 119
           Q+V EG V EKLQCMGCKARLGSFNWAG+QCSCGAW  PAFQLHK+RLD+C
Sbjct: 164 QAVHEGHVEEKLQCMGCKARLGSFNWAGMQCSCGAWVNPAFQLHKNRLDEC 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585423|ref|XP_002533406.1| conserved hypothetical protein [Ricinus communis] gi|223526751|gb|EEF28979.1| conserved hypothetical protein [Ricinus communis]

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/119 (73%), Positives = 99/119 (83%), Gaps = 7/119 (5%)

Query: 9   ANPQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRS--EMENEPAECSSLFVESMK 66
           + PQ IYRCKKCRR+VAS ENIV HE+GKGE+CFK K+RS    + EPAECSS+FVE MK
Sbjct: 26  SKPQVIYRCKKCRRIVASVENIVLHERGKGEECFKWKRRSGDPQDKEPAECSSIFVEPMK 85

Query: 67  WMQSVQEGFVGE-----KLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDKCF 120
           WMQ+V EGFVGE     KLQC+GCKARLGSFNWAG+QC+CG W  PAFQLHKSRLDKCF
Sbjct: 86  WMQTVHEGFVGEGSVGEKLQCLGCKARLGSFNWAGMQCNCGTWVNPAFQLHKSRLDKCF 144

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454258|ref|XP_002275023.1| PREDICTED: dual specificity protein phosphatase 12 [Vitis vinifera]

 Score =  181 bits (458), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 84/111 (75%), Positives = 98/111 (88%), Gaps = 2/111 (1%)

Query: 11  PQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSE--MENEPAECSSLFVESMKWM 68
           PQ IYRCK+CRR+VA++ENIVPHE+G+GE+CFK +KRS    E EP+ECSS+FVE MKWM
Sbjct: 25  PQVIYRCKRCRRIVAAQENIVPHERGQGEKCFKWRKRSGDLTEKEPSECSSIFVEPMKWM 84

Query: 69  QSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDKC 119
           Q+V EG V EKLQCMGCKARLGSFNWAG+QCSCGAW  PAFQLHK+RLD+C
Sbjct: 85  QAVHEGHVEEKLQCMGCKARLGSFNWAGMQCSCGAWVNPAFQLHKNRLDEC 135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492020|gb|AFK34076.1| unknown [Lotus japonicus]

 Score =  178 bits (451), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/115 (73%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 9   ANPQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRS----EMENEPAECSSLFVES 64
           A PQ +YRCKKCRR+VASEE +VPHE+GKGE  FK +KRS    E+E +PAEC+S+FVE 
Sbjct: 13  AKPQLLYRCKKCRRIVASEETMVPHERGKGESSFKWQKRSNEPWEVEKQPAECTSVFVEP 72

Query: 65  MKWMQSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDKC 119
           MKWMQ+VQEG V EKL CMGC ARLGSFNWAG+QCSCGAW  PAFQLHKSRLD+C
Sbjct: 73  MKWMQAVQEGHVEEKLLCMGCNARLGSFNWAGMQCSCGAWVNPAFQLHKSRLDEC 127

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777648|emb|CAN78203.1| hypothetical protein VITISV_019152 [Vitis vinifera]

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 83/111 (74%), Positives = 96/111 (86%), Gaps = 2/111 (1%)

Query: 11  PQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSE--MENEPAECSSLFVESMKWM 68
           PQ IYRCK CRR+VA++ENIVPHE+G+GE+CFK +KRS    E E +ECSS+FVE MKWM
Sbjct: 25  PQVIYRCKXCRRIVAAQENIVPHERGQGEKCFKWRKRSGDLTEKEXSECSSIFVEPMKWM 84

Query: 69  QSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDKC 119
           Q+V EG V EKLQCMGCKARLGSFNWAG+QCSCGAW  PAFQLHK+RLD+C
Sbjct: 85  QAVHEGHVEEKLQCMGCKARLGSFNWAGMQCSCGAWVNPAFQLHKNRLDEC 135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249200|ref|NP_001240265.1| uncharacterized protein LOC100788597 [Glycine max] gi|255645211|gb|ACU23103.1| unknown [Glycine max]

 Score =  173 bits (438), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 83/116 (71%), Positives = 93/116 (80%), Gaps = 4/116 (3%)

Query: 8   VANPQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRS----EMENEPAECSSLFVE 63
              PQ IYRCKKCRR+VASEENIV HE+GKGE  FK KKRS    EME +  +C+S+FVE
Sbjct: 13  TTKPQLIYRCKKCRRIVASEENIVSHERGKGESSFKWKKRSSESWEMEKQSVDCTSVFVE 72

Query: 64  SMKWMQSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDKC 119
            MKWMQ+VQEG V EKL CMGC ARLG FNWAG+QCSCGAW  PAFQLHKS+LD+C
Sbjct: 73  PMKWMQAVQEGHVEEKLLCMGCNARLGYFNWAGMQCSCGAWVNPAFQLHKSKLDEC 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449509039|ref|XP_004163476.1| PREDICTED: dual specificity protein phosphatase 12-like [Cucumis sativus]

 Score =  171 bits (433), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 78/114 (68%), Positives = 96/114 (84%), Gaps = 4/114 (3%)

Query: 11  PQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSE----MENEPAECSSLFVESMK 66
           PQ +YRCKKCRR+VA++E+I+ HE+GKGE CFK  KRS     +EN+PA+C+S+FVE MK
Sbjct: 15  PQVMYRCKKCRRIVATQESIITHERGKGESCFKWNKRSGNSQGIENKPADCTSIFVEPMK 74

Query: 67  WMQSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDKCF 120
           WM+++QEG V EKL C+GCKARLGSFNWAG+QCSCGAW  PAFQLHK RLD+C 
Sbjct: 75  WMETLQEGHVEEKLVCIGCKARLGSFNWAGMQCSCGAWVNPAFQLHKGRLDECL 128

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462651|ref|XP_004149054.1| PREDICTED: dual specificity protein phosphatase 12-like [Cucumis sativus]

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 96/114 (84%), Gaps = 4/114 (3%)

Query: 11  PQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSE----MENEPAECSSLFVESMK 66
           PQ +YRCKKCRR+VA++E+I+ HE+GKGE CFK  KRS     +EN+PA+C+S+FVE MK
Sbjct: 15  PQVMYRCKKCRRIVATQESIITHERGKGESCFKWNKRSGNSQGIENKPADCTSIFVEPMK 74

Query: 67  WMQSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDKCF 120
           WM+++Q+G V EKL C+GCKARLGSFNWAG+QCSCGAW  PAFQLHK RLD+C 
Sbjct: 75  WMETLQDGHVEEKLVCIGCKARLGSFNWAGMQCSCGAWVNPAFQLHKGRLDECL 128

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527352|ref|XP_003532275.1| PREDICTED: dual specificity protein phosphatase 12-like [Glycine max]

 Score =  167 bits (424), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 81/121 (66%), Positives = 91/121 (75%), Gaps = 4/121 (3%)

Query: 3   QVHKHVANPQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRS----EMENEPAECS 58
           Q       PQ IYRCKKCRR+VAS ENIV HE GKGE  FK KKRS    E E +  +C+
Sbjct: 8   QTETTTKPPQLIYRCKKCRRIVASVENIVSHEHGKGESSFKWKKRSSQSWETEKQSVDCT 67

Query: 59  SLFVESMKWMQSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDK 118
           S+FVE MKWMQ+V EG V +KL CMGC ARLG+FNWAG+QCSCGAW  PAFQLHKSRLD+
Sbjct: 68  SVFVEPMKWMQAVHEGHVEDKLLCMGCNARLGNFNWAGMQCSCGAWVNPAFQLHKSRLDE 127

Query: 119 C 119
           C
Sbjct: 128 C 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079099|ref|XP_002305748.1| predicted protein [Populus trichocarpa] gi|222848712|gb|EEE86259.1| predicted protein [Populus trichocarpa]

 Score =  167 bits (423), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 82/117 (70%), Positives = 94/117 (80%), Gaps = 8/117 (6%)

Query: 11  PQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRS--EMEN-EPAECSSLFVESMKW 67
           P  IYRCK+CRR+VASEENIVPHE+GKGEQCFK  K+S    EN EP ECSS+FVE MKW
Sbjct: 27  PPVIYRCKRCRRIVASEENIVPHERGKGEQCFKWNKKSVDSCENQEPPECSSIFVEPMKW 86

Query: 68  MQS-----VQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDKC 119
           M +     +  GFVGEKLQCMGCKARLGSFNWAG+QC+CG W  PAF LHK++LD+C
Sbjct: 87  MLTGKYTLLISGFVGEKLQCMGCKARLGSFNWAGMQCNCGTWINPAFLLHKNKLDEC 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
TAIR|locus:505006495	142	AT4G18593 "AT4G18593" [Arabido	0.950	0.809	0.646	7.5e-41
UNIPROTKB|Q6K546	193	OSJNBa0009N02.2 "Dual specific	0.909	0.569	0.527	8.5e-33
UNIPROTKB|Q2RAU9	356	Os11g0136800 "Os11g0136800 pro	0.876	0.297	0.532	3e-30
UNIPROTKB|Q2QY35	356	LOC_Os12g03990 "Os12g0133700 p	0.876	0.297	0.522	4.9e-30
ZFIN|ZDB-GENE-050626-91	305	dusp12 "dual specificity phosp	0.892	0.354	0.451	2.2e-25
UNIPROTKB|Q9UNI6	340	DUSP12 "Dual specificity prote	0.884	0.314	0.450	3.3e-24
UNIPROTKB|F1N842	316	DUSP12 "Uncharacterized protei	0.900	0.344	0.424	1.1e-23
UNIPROTKB|F1MW70	345	DUSP12 "Uncharacterized protei	0.867	0.304	0.449	1.1e-23
MGI|MGI:1890614	339	Dusp12 "dual specificity phosp	0.867	0.309	0.431	1.4e-23
RGD|68375	339	Dusp12 "dual specificity phosp	0.867	0.309	0.440	1.4e-23

TAIR|locus:505006495 AT4G18593 "AT4G18593" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 75/116 (64%), Positives = 91/116 (78%)

Query:     4 VHKHVANPQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSEMENEPAECSSLFVE 63
             + + +  PQ +YRCKKCRR+VA EENIVPHE GKGE+CF  KKRS   +E  +CSS+FVE
Sbjct:    16 LQESLPKPQVMYRCKKCRRIVAIEENIVPHEPGKGEECFAWKKRSG-NSEQVQCSSIFVE 74

Query:    64 SMKWMQSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDKC 119
              MKWMQ++ +G V EKL C GC  RLG FNWAG+QCSCGAW  PAFQL+KSR+D+C
Sbjct:    75 PMKWMQTIHDGMVEEKLLCFGCNGRLGYFNWAGMQCSCGAWVNPAFQLNKSRIDEC 130

GO:0000188 "inactivation of MAPK activity" evidence=IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006470 "protein dephosphorylation" evidence=IBA

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=IBA

GO:0033549 "MAP kinase phosphatase activity" evidence=IBA

GO:0043405 "regulation of MAP kinase activity" evidence=IBA

UNIPROTKB|Q6K546 OSJNBa0009N02.2 "Dual specificity phosphatase-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 58/110 (52%), Positives = 81/110 (73%)

Query:    10 NPQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSEMENEPAECSSLFVESMKWMQ 69
             +P   YRCK+CR LVA+E  +V H+ G+GE+CF  +K+  ++ +  EC+ LFVE +KWMQ
Sbjct:    82 DPGTTYRCKRCRTLVATEGYVVTHKVGRGEKCFATRKKYHVDEKEPECTCLFVEPLKWMQ 141

Query:    70 SVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDKC 119
              V EG++  K+ C  C +RLG F+WAG+QCSCGAW  PAFQL KS++D+C
Sbjct:   142 PVVEGYISGKIACRKCNSRLGQFHWAGMQCSCGAWVNPAFQLVKSKIDQC 191

GO:0000188 "inactivation of MAPK activity" evidence=IBA

GO:0006470 "protein dephosphorylation" evidence=IBA

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=IBA

GO:0033549 "MAP kinase phosphatase activity" evidence=IBA

GO:0043405 "regulation of MAP kinase activity" evidence=IBA

UNIPROTKB|Q2RAU9 Os11g0136800 "Os11g0136800 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 58/109 (53%), Positives = 80/109 (73%)

Query:    12 QAIYRCKKCRRLVASEENIVPHEQGKGEQCFK--RKKRSEME-NEPAECSSLFVESMKWM 68
             Q  YRCKKCRR+VA + N+V H  G+GE CF+   K++ E   ++  +CSSLFVE +KWM
Sbjct:   244 QTAYRCKKCRRIVAVQGNVVSHTPGEGESCFQWQNKRKGERSYSKEQDCSSLFVEPLKWM 303

Query:    69 QSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLD 117
               V++G +  KL C+ C ARLG FNW+G+QC+CG+W TPAFQ+ KS++D
Sbjct:   304 TPVEDGALEGKLSCIHCGARLGYFNWSGIQCNCGSWITPAFQISKSKVD 352

GO:0000188 "inactivation of MAPK activity" evidence=IBA

GO:0006470 "protein dephosphorylation" evidence=IBA

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=IBA

GO:0033549 "MAP kinase phosphatase activity" evidence=IBA

GO:0043405 "regulation of MAP kinase activity" evidence=IBA

UNIPROTKB|Q2QY35 LOC_Os12g03990 "Os12g0133700 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 57/109 (52%), Positives = 80/109 (73%)

Query:    12 QAIYRCKKCRRLVASEENIVPHEQGKGEQCFK--RKKRSEME-NEPAECSSLFVESMKWM 68
             Q  YRCKKCRR++A + N+V H  G+GE CF+   K++ E   ++  +CSSLFVE +KWM
Sbjct:   244 QPAYRCKKCRRIIAVQGNVVSHTPGEGESCFQWQNKRKGERSYSKEQDCSSLFVEPLKWM 303

Query:    69 QSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLD 117
               V++G +  KL C+ C ARLG FNW+G+QC+CG+W TPAFQ+ KS++D
Sbjct:   304 TPVEDGALEGKLSCIHCGARLGYFNWSGIQCNCGSWITPAFQISKSKVD 352

GO:0000188 "inactivation of MAPK activity" evidence=IBA

GO:0006470 "protein dephosphorylation" evidence=IBA

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=IBA

GO:0033549 "MAP kinase phosphatase activity" evidence=IBA

GO:0043405 "regulation of MAP kinase activity" evidence=IBA

ZFIN|ZDB-GENE-050626-91 dusp12 "dual specificity phosphatase 12" [Danio rerio (taxid:7955)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 51/113 (45%), Positives = 72/113 (63%)

Query:    10 NPQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKR----SEMENEPAECSSLFVESM 65
             N +A+YRC+KCRR +    +I+ H  G G   F  KK     S  E+E  +C+S F+E +
Sbjct:   184 NAEAVYRCRKCRRTLFRHSSILSHSVGSGASAFSHKKTRIVSSSAEDE-TQCTSYFIEPV 242

Query:    66 KWMQSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDK 118
             +WM+    G +  +L C  C ++LGSFNW G QCSCG W TPAFQ+HK+R+D+
Sbjct:   243 QWMEQALLGVMDGQLLCPKCSSKLGSFNWYGEQCSCGRWVTPAFQMHKNRVDE 295

GO:0016791 "phosphatase activity" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA;IBA

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=IEA;IBA

GO:0016311 "dephosphorylation" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0033133 "positive regulation of glucokinase activity" evidence=IBA

GO:0007254 "JNK cascade" evidence=IRD

GO:0005737 "cytoplasm" evidence=IBA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|Q9UNI6 DUSP12 "Dual specificity protein phosphatase 12" [Homo sapiens (taxid:9606)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 50/111 (45%), Positives = 71/111 (63%)

Query:    12 QAIYRCKKCRRLVASEENIVPHEQGKGEQCF--KRKKRSEM--ENEPAECSSLFVESMKW 67
             + +Y+C+KCRR +    +I+ H +G G   F  KR   S M      A+C+S F+E ++W
Sbjct:   216 EVLYKCRKCRRSLFRSSSILDHREGSGPIAFAHKRMTPSSMLTTGRQAQCTSYFIEPVQW 275

Query:    68 MQSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDK 118
             M+S   G +  +L C  C A+LGSFNW G QCSCG W TPAFQ+HK+R+D+
Sbjct:   276 MESALLGVMDGQLLCPKCSAKLGSFNWYGEQCSCGRWITPAFQIHKNRVDE 326

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0019900 "kinase binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IBA

GO:0006470 "protein dephosphorylation" evidence=IBA

GO:0007254 "JNK cascade" evidence=IRD

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=IBA

GO:0033133 "positive regulation of glucokinase activity" evidence=IBA

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0035335 "peptidyl-tyrosine dephosphorylation" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|F1N842 DUSP12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 48/113 (42%), Positives = 71/113 (62%)

Query:    10 NPQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSEMEN----EPAECSSLFVESM 65
             N + +YRC+KCRR +    +I+ H +G G   F  K+ +E  +     P +C+S F+E +
Sbjct:   190 NTEVLYRCRKCRRALFRSSSILSHVEGSGPTAFAHKRITESTHLRGSGPDKCTSYFIEPV 249

Query:    66 KWMQSVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDK 118
             +WM+    G    +L C  C ++LGSF+W G QCSCG W TPAFQ+HKSR+D+
Sbjct:   250 QWMEPALLGVTEGQLLCPKCTSKLGSFSWWGEQCSCGHWVTPAFQIHKSRVDE 302

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1MW70 DUSP12 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 49/109 (44%), Positives = 69/109 (63%)

Query:    14 IYRCKKCRRLVASEENIVPHEQGKGEQCF--KRKKRSEM--ENEPAECSSLFVESMKWMQ 69
             +Y+C+KCRR +    +++ H +G G   F  KR   S M      A+C+S F+E ++WM+
Sbjct:   218 LYKCRKCRRSLFRSSSVLDHNEGSGPIAFAHKRMTASPMLSAGSQAQCTSYFIEPVQWME 277

Query:    70 SVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDK 118
             S   G +  +L C  C A+LGSFNW G QCSCG W  PAFQ+HKSR+D+
Sbjct:   278 STLLGVMDGQLLCPKCNAKLGSFNWYGEQCSCGRWIAPAFQIHKSRVDE 326

GO:0005634 "nucleus" evidence=IEA

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

MGI|MGI:1890614 Dusp12 "dual specificity phosphatase 12" [Mus musculus (taxid:10090)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 47/109 (43%), Positives = 69/109 (63%)

Query:    14 IYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSEME----NEPAECSSLFVESMKWMQ 69
             +Y+C+KCRR +    +I+ H +G G   F  K+ +          A+C+S F+E ++WM+
Sbjct:   217 LYKCRKCRRSLFRHSSILGHSEGSGPIAFAHKRTAPSSVLTTGSQAQCTSYFIEPVQWME 276

Query:    70 SVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDK 118
             S   G +  +L C  C A+LGSFNW G QCSCG W TPAFQ+HK+R+D+
Sbjct:   277 STLLGVMDGQLLCPKCSAKLGSFNWYGEQCSCGRWITPAFQIHKNRVDE 325

GO:0004721 "phosphoprotein phosphatase activity" evidence=ISO

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;IBA

GO:0006470 "protein dephosphorylation" evidence=ISO;IBA

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=ISS;IDA

GO:0016311 "dephosphorylation" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016791 "phosphatase activity" evidence=IEA

GO:0019900 "kinase binding" evidence=ISO

GO:0033133 "positive regulation of glucokinase activity" evidence=ISO;IBA

GO:0046872 "metal ion binding" evidence=IEA

RGD|68375 Dusp12 "dual specificity phosphatase 12" [Rattus norvegicus (taxid:10116)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 48/109 (44%), Positives = 70/109 (64%)

Query:    14 IYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKR--SEM--ENEPAECSSLFVESMKWMQ 69
             +Y+C+KCRR +    +I+ H +G G   F  K+   S +      A+C+S F+E ++WM+
Sbjct:   217 LYKCRKCRRSLFRRSSILDHSEGSGPVAFAHKRTGLSSVLTTGNQAQCTSYFIEPVQWME 276

Query:    70 SVQEGFVGEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLDK 118
             S   G +  +L C  C A+LGSFNW G QCSCG W TPAFQ+HK+R+D+
Sbjct:   277 SALLGVMDGQLLCPKCSAKLGSFNWYGEQCSCGRWITPAFQIHKNRVDE 325

GO:0004721 "phosphoprotein phosphatase activity" evidence=IDA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0006470 "protein dephosphorylation" evidence=IEA;IDA

GO:0007254 "JNK cascade" evidence=IRD

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=IEA;ISO;IBA

GO:0016311 "dephosphorylation" evidence=ISO

GO:0019900 "kinase binding" evidence=IPI

GO:0033133 "positive regulation of glucokinase activity" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
PF03226	96	Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis	95.87
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	87.87
PF09814	354	HECT_2: HECT-like Ubiquitin-conjugating enzyme (E2	85.83
smart00714	67	LITAF Possible membrane-associated motif in LPS-in	85.09
PF10601	73	zf-LITAF-like: LITAF-like zinc ribbon domain; Inte	82.29
PF01641	124	SelR: SelR domain; InterPro: IPR002579 Peptide met	81.51
PF10122	51	Mu-like_Com: Mu-like prophage protein Com; InterPr	81.27

>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes

Probab=95.87  E-value=0.0084  Score=40.51  Aligned_cols=21  Identities=29%  Similarity=0.960  Sum_probs=19.2

Q ss_pred             eEecccccccccCCCCeee-CC
Q 039226           14 IYRCKKCRRLVASEENIVP-HE   34 (121)
Q Consensus        14 ~yrCrKCR~~Lf~~~~ii~-H~   34 (121)
                      .|.|++|+..|+.+.+|+. |.
T Consensus         2 vf~C~~C~t~l~ds~~lvs~~g   23 (96)
T PF03226_consen    2 VFQCKNCKTILADSNELVSFHG   23 (96)
T ss_pred             EEECCCCCCCcCCHHHheecCC
Confidence            6999999999999999999 53

The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=87.87  E-value=0.22  Score=25.77  Aligned_cols=8  Identities=38%  Similarity=1.061  Sum_probs=5.0

Q ss_pred             CCCCCCcc
Q 039226           82 CMGCKARL   89 (121)
Q Consensus        82 CPkC~~kL   89 (121)
                      ||+|+++|
T Consensus         2 Cp~CG~~~    9 (23)
T PF13240_consen    2 CPNCGAEI    9 (23)
T ss_pred             CcccCCCC
Confidence            66666665

>PF09814 HECT_2: HECT-like Ubiquitin-conjugating enzyme (E2)-binding; InterPro: IPR019193 This entry consists of E3 ubiquitin-protein ligases which accept ubiquitin from specific E2 ubiquitin-conjugating enzymes, and transfer it to substrates, generally promoting their degradation by the proteasome []

Probab=85.83  E-value=1.1  Score=36.24  Aligned_cols=30  Identities=23%  Similarity=0.513  Sum_probs=21.6

Q ss_pred             ceeEECCCCCCccceeeeecccCCCCCeeeceEEEecCCcc
Q 039226           77 GEKLQCMGCKARLGSFNWAGLQCSCGAWATPAFQLHKSRLD  117 (121)
Q Consensus        77 ~GKL~CPkC~~kLG~f~w~G~qCsCG~wv~Paf~l~kskVD  117 (121)
                      +..+.|.+|++-||.           ..-.-++.|+|..|.
T Consensus       191 ~~~v~C~~C~~~LG~-----------~~~~~~~rL~K~~l~  220 (354)
T PF09814_consen  191 ERIVRCKRCSSQLGE-----------KFSDNTVRLYKWALS  220 (354)
T ss_pred             CcEEEeCCCCceeCC-----------CccCCeEEEEeeeEE
Confidence            468999999999997           222346677766665

>smart00714 LITAF Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins

Probab=85.09  E-value=0.47  Score=30.01  Aligned_cols=19  Identities=37%  Similarity=0.716  Sum_probs=15.9

Q ss_pred             ccceeEECCCCCCccceee
Q 039226           75 FVGEKLQCMGCKARLGSFN   93 (121)
Q Consensus        75 ~~~GKL~CPkC~~kLG~f~   93 (121)
                      -.+..-+||+|++.||.|+
T Consensus        48 ~kd~~H~Cp~C~~~lg~~~   66 (67)
T smart00714       48 FKDVNHYCPNCGAFLGTYN   66 (67)
T ss_pred             ccCccEECCCCCCEeEEec
Confidence            3456789999999999985

>PF10601 zf-LITAF-like: LITAF-like zinc ribbon domain; InterPro: IPR006629 Members of this family display a conserved zinc ribbon structure [] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues

Probab=82.29  E-value=0.8  Score=29.38  Aligned_cols=67  Identities=16%  Similarity=0.202  Sum_probs=35.8

Q ss_pred             CCCeeEecccccccccCCCCeeeCCCCCcchhhhhhccccCCCCCCCCceeEe---cccchhhhhhccccceeEECCCCC
Q 039226           10 NPQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSEMENEPAECSSLFV---ESMKWMQSVQEGFVGEKLQCMGCK   86 (121)
Q Consensus        10 ~~~~~yrCrKCR~~Lf~~~~ii~H~~~~~~~~~~~~~~~~~~~~~~~C~~~Fi---ep~~Wm~~~~~~~~~GKL~CPkC~   86 (121)
                      +.+....|..|+...-+   .++|.++.....              .+-.+|+   =|.-|+--..+.-.+-.-+||+|+
T Consensus         3 ~~p~~~~CP~C~~~~~T---~v~~~~g~~t~~--------------~~~~l~~~~~~~~~~iP~~~~~~kd~~H~Cp~C~   65 (73)
T PF10601_consen    3 PEPVRIYCPYCQQQVQT---RVEYKSGTMTYI--------------CAALLCLFGCWPCCCIPFCCDSCKDVYHYCPNCG   65 (73)
T ss_pred             CCceeeECCCCCCEEEE---EEEEEeChHHHH--------------HHHHHHHHHHHHHhhHhhccccccCceEECCCCC
Confidence            35667889999886632   345555432110              0111111   122222222222334568999999


Q ss_pred             Cccceee
Q 039226           87 ARLGSFN   93 (121)
Q Consensus        87 ~kLG~f~   93 (121)
                      +.||.|.
T Consensus        66 ~~lg~~~   72 (73)
T PF10601_consen   66 AFLGTYK   72 (73)
T ss_pred             CEeEEEe
Confidence            9999885

Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS). The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [].

>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=81.51  E-value=1.7  Score=31.42  Aligned_cols=66  Identities=23%  Similarity=0.461  Sum_probs=37.0

Q ss_pred             CCCeeEecccccccccCCCCeeeCCCCCcchhhhhhccccCCCCCCCCceeEecccch--hhhhh---ccccceeEECCC
Q 039226           10 NPQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSEMENEPAECSSLFVESMKW--MQSVQ---EGFVGEKLQCMG   84 (121)
Q Consensus        10 ~~~~~yrCrKCR~~Lf~~~~ii~H~~~~~~~~~~~~~~~~~~~~~~~C~~~Fiep~~W--m~~~~---~~~~~GKL~CPk   84 (121)
                      ...-.|.|..|...||.+++=...  +.|=.+                   |-+|++-  +....   -+..---+.|.+
T Consensus        33 ~~~G~Y~C~~Cg~pLF~S~~Kf~S--g~GWPS-------------------F~~~i~~~~v~~~~D~s~g~~R~Ev~C~~   91 (124)
T PF01641_consen   33 KEEGIYVCAVCGTPLFSSDTKFDS--GCGWPS-------------------FWQPIPGDAVKEREDFSHGMVRTEVRCAR   91 (124)
T ss_dssp             TSSEEEEETTTS-EEEEGGGEETS--SSSSSE-------------------ESSCSSTTSEEEEEEECTSSEEEEEEETT
T ss_pred             CCCEEEEcCCCCCccccCcccccC--CcCCcc-------------------ccCcCChHHEEEeccccCCceEEEEEecC
Confidence            356799999999999988743321  111111                   2222211  11110   122334689999


Q ss_pred             CCCccceeeeec
Q 039226           85 CKARLGSFNWAG   96 (121)
Q Consensus        85 C~~kLG~f~w~G   96 (121)
                      |++.||.-=-.|
T Consensus        92 Cg~HLGHVF~DG  103 (124)
T PF01641_consen   92 CGSHLGHVFDDG  103 (124)
T ss_dssp             TCCEEEEEESTS
T ss_pred             CCCccccEeCCC
Confidence            999999754455

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....

>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ]

Probab=81.27  E-value=0.57  Score=29.00  Aligned_cols=17  Identities=29%  Similarity=0.751  Sum_probs=14.4

Q ss_pred             eEecccccccccCCCCe
Q 039226           14 IYRCKKCRRLVASEENI   30 (121)
Q Consensus        14 ~yrCrKCR~~Lf~~~~i   30 (121)
                      .+||+.|.+.||...++
T Consensus         4 eiRC~~CnklLa~~g~~   20 (51)
T PF10122_consen    4 EIRCGHCNKLLAKAGEV   20 (51)
T ss_pred             ceeccchhHHHhhhcCc
Confidence            68999999999996544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
2lo3_A	44	SAGA-associated factor 73; zinc-finger, deubiquiti	88.85
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	86.67
2qfd_A	145	Probable ATP-dependent RNA helicase DDX58; zinc fi	82.12

>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}

Probab=88.85  E-value=0.13  Score=29.93  Aligned_cols=30  Identities=33%  Similarity=0.596  Sum_probs=22.8

Q ss_pred             ccccCCCCCCeeEe-cccccccccCCCCeeeC
Q 039226            3 QVHKHVANPQAIYR-CKKCRRLVASEENIVPH   33 (121)
Q Consensus         3 ~~~~~~~~~~~~yr-CrKCR~~Lf~~~~ii~H   33 (121)
                      ++.+..-++++.|| |..|.+.++.+. |+.|
T Consensus         5 ~ii~~ple~~~~YRvC~~CgkPi~lsA-IvdH   35 (44)
T 2lo3_A            5 QLIEDPLDKPIQYRVCEKCGKPLALTA-IVDH   35 (44)
T ss_dssp             CCCCCCCCCCCCEEECTTTCCEEETTT-HHHH
T ss_pred             chhhcccCccccchhhcccCCcchHHH-HHHH
Confidence            34555556788999 999999998764 6666

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}

Probab=86.67  E-value=0.76  Score=31.38  Aligned_cols=29  Identities=24%  Similarity=0.386  Sum_probs=21.8

Q ss_pred             CcccccCCCCCCeeEecccccccccCCCCee
Q 039226            1 MEQVHKHVANPQAIYRCKKCRRLVASEENIV   31 (121)
Q Consensus         1 ~~~~~~~~~~~~~~yrCrKCR~~Lf~~~~ii   31 (121)
                      ||...+  ....-.|.|..|...||.+++=.
T Consensus         2 ~e~y~~--~~~~G~Y~C~~Cg~pLF~S~~KF   30 (105)
T 3mao_A            2 MEVFQN--HFEPGVYVCAKCGYELFSSRSKY   30 (105)
T ss_dssp             CCCCTT--CCCSEEEEETTTCCEEEEGGGEE
T ss_pred             cccccC--CCCCEEEEcCCCCCccccCCccc
Confidence            555554  34567999999999999987543

>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A

Probab=82.12  E-value=0.73  Score=33.13  Aligned_cols=80  Identities=14%  Similarity=0.181  Sum_probs=44.8

Q ss_pred             CCCCeeEecccccccccCCCCeeeCCCCCcchhhhhhccccCCCCCCCCceeEec-ccchhhh-hhccccceeEECC--C
Q 039226            9 ANPQAIYRCKKCRRLVASEENIVPHEQGKGEQCFKRKKRSEMENEPAECSSLFVE-SMKWMQS-VQEGFVGEKLQCM--G   84 (121)
Q Consensus         9 ~~~~~~yrCrKCR~~Lf~~~~ii~H~~~~~~~~~~~~~~~~~~~~~~~C~~~Fie-p~~Wm~~-~~~~~~~GKL~CP--k   84 (121)
                      +++...+.||||-..+.+++||-..+...-.+.            .++=..+|+. |.. +.. ..+=+..|+|.|-  +
T Consensus        22 ~~~~v~llCrkC~~~~C~g~DIrvie~~HhV~v------------~p~F~~~y~v~~~~-~~k~f~d~~~~g~I~C~~~~   88 (145)
T 2qfd_A           22 DKENKKLLCRKCKALACYTADVRVIEECHYTVL------------GDAFKECFVSRPHP-KPKQFSSFEKRAKIFCARQN   88 (145)
T ss_dssp             -CCCCEEEETTTCCEEEEGGGEEEETTTEEEEC------------STTGGGTEEEEECS-SCCCCSSEEEEEEEEECSTT
T ss_pred             CccceEEEccCCCeeEEcccceeEecCCcEEec------------CcCceeeEEEcCCc-ccchhhceeCCceEEeCCcc
Confidence            346678999999999999999955432110000            0011123432 111 111 1111368999997  8


Q ss_pred             CCCccceeee-ecccCCC
Q 039226           85 CKARLGSFNW-AGLQCSC  101 (121)
Q Consensus        85 C~~kLG~f~w-~G~qCsC  101 (121)
                      |+...|..-= .|.+.+|
T Consensus        89 Cg~~WG~~m~yk~~~lP~  106 (145)
T 2qfd_A           89 CSHDWGIHVKYKTFEIPV  106 (145)
T ss_dssp             TCCEEEEEEEETTEEEEE
T ss_pred             cCcchhceEEEccccCce
Confidence            9999997654 3544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	121
d1rqga3	35	Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyro	90.55
d1pfva3	35	Methionyl-tRNA synthetase (MetRS), Zn-domain {Esch	90.52
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	88.62
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	83.64

>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain
family: Methionyl-tRNA synthetase (MetRS), Zn-domain
domain: Methionyl-tRNA synthetase (MetRS), Zn-domain
species: Pyrococcus abyssi [TaxId: 29292]

Probab=90.55  E-value=0.06  Score=28.71  Aligned_cols=24  Identities=42%  Similarity=0.696  Sum_probs=19.0

Q ss_pred             ECCCCCCccceeeeecccC-CCCCeeece
Q 039226           81 QCMGCKARLGSFNWAGLQC-SCGAWATPA  108 (121)
Q Consensus        81 ~CPkC~~kLG~f~w~G~qC-sCG~wv~Pa  108 (121)
                      .||+|++.=.    .|-|| .||+.+.|.
T Consensus         4 ~CP~C~~~~a----~GDqCe~CG~~~~p~   28 (35)
T d1rqga3           4 TCPYCGAEDQ----KGDQCEVCGRPLTPE   28 (35)
T ss_dssp             BCSSSCCSCC----CTTTCSSSCCCCCTT
T ss_pred             ECCCCCCCcc----cCcchhhcCCccCHH
Confidence            4999987642    68999 599998875

>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain
family: Methionyl-tRNA synthetase (MetRS), Zn-domain
domain: Methionyl-tRNA synthetase (MetRS), Zn-domain
species: Escherichia coli [TaxId: 562]

Probab=90.52  E-value=0.079  Score=28.23  Aligned_cols=25  Identities=36%  Similarity=0.639  Sum_probs=19.8

Q ss_pred             EECCCCCCccceeeeecccC-CCCCeeece
Q 039226           80 LQCMGCKARLGSFNWAGLQC-SCGAWATPA  108 (121)
Q Consensus        80 L~CPkC~~kLG~f~w~G~qC-sCG~wv~Pa  108 (121)
                      =.||+|++.=    =.|-|| .||+...|.
T Consensus         3 G~CP~C~~~~----a~GDqCe~CG~~~~p~   28 (35)
T d1pfva3           3 GTCPKCKSPD----QYGDNCEVCGATYSPT   28 (35)
T ss_dssp             EECTTTCCSS----EETTBCTTTCCBCCGG
T ss_pred             eECCCCCCcc----cccccHHHcCCcCCHH
Confidence            3699998763    369999 599998885

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.62  E-value=0.009  Score=30.07  Aligned_cols=21  Identities=33%  Similarity=0.790  Sum_probs=19.1

Q ss_pred             EecccccccccCCCCeeeCCC
Q 039226           15 YRCKKCRRLVASEENIVPHEQ   35 (121)
Q Consensus        15 yrCrKCR~~Lf~~~~ii~H~~   35 (121)
                      |.|-||.+..|..+++++|+.
T Consensus         2 f~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           2 FECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHH
T ss_pred             CccccchhhhhhHhHHHHHHH
Confidence            679999999999999999964

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.64  E-value=0.17  Score=32.07  Aligned_cols=34  Identities=29%  Similarity=0.501  Sum_probs=25.7

Q ss_pred             CCCceeEec--ccchhhhhhccccceeEECCCCCCccce
Q 039226           55 AECSSLFVE--SMKWMQSVQEGFVGEKLQCMGCKARLGS   91 (121)
Q Consensus        55 ~~C~~~Fie--p~~Wm~~~~~~~~~GKL~CPkC~~kLG~   91 (121)
                      ..|.++|=.  -.+||..   ....|++.||-|.+.+|.
T Consensus        59 ~~CgH~FH~~Ci~~Wl~~---~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          59 TKCSHAFHLLCLLAMYCN---GNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SSSCCEECHHHHHHHHHH---TCCSSCCBCTTTCCBSSS
T ss_pred             CCCCChhhHHHHHHHHHh---cCcCCCCccccccchhcc
Confidence            469998843  5689986   235678999999998864